Recent research on the hydrodynamics of the Sacramento - San Joaquin River Delta and north San Francisco Bay

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Burau, J.R.; Monismith, S.G.; Stacey, M.T.; Oltmann, R.N.; Lacy, J.R.; Schoellhamer, D.H.

1999-01-01

This article presents an overview of recent findings from hydrodynamic research on circulation and mixing in the Sacramento-San Joaquin Delta (Delta) (Figure 1) and North San Francisco Bay (North Bay) (Figure 2). For the purposes of this article, North Bay includes San Pablo Bay, Carquinez Strait, and Suisun Bay. The findings presented are those gained from field studies carried out by the U.S. Geological Survey (USGS), as part of the Interagency Ecological Program (IEP), and Stanford University beginning about 1993. The premise behind these studies was that a basic understanding of circulation and mixing patterns in the Bay and Delta is an essential part of understanding how biota and water quality are affected by natural hydrologic variability, water appropriation, and development activities. Data collected for the field studies described in this article have significantly improved our understanding of Bay and Delta hydrodynamics. Measured flows ,in the Delta have provided valuable information on how water moves through the Delta's network of channels and how export pumping affects flows. Studies of the shallows and shallow-channel exchange processes conducted in Honker Bay have shown that the water residence time in Honker Bay is much shorter than previously reported (on the order of hours to several tidal cycles instead ofweeks). Suisun Bay studies have provided data on hydrodynamic transport and accumulation mechanisms that operate primarily in the channels. The Suisun Bay studies have caused us to revise our understanding of residual circulation in the channels of North Bay and of "entrapment" mechanisms in the low salinity zone. Finally, detailed tidal and residual (tidally averaged) time-scale studies of the mechanisms that control gravitational circulation in the estuary show that density-driven transport in the channels is governed by turbulence time-scale (seconds) interactions between the mean flow and stratification. The hydrodynamic research

Facilitating Adaptive Management in California’s Sacramento–San Joaquin Delta

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John A. Wiens

2017-07-01

Full Text Available https://doi.org/10.15447/sfews.2017v15iss2art3Uncertainties in understanding ecosystems increase the risk that management will fail to achieve desired results. Adaptive management is a structured, iterative application of science-based knowledge to reduce uncertainties and build flexibility into decision-making. However, adaptive management is more easily planned than implemented, and it is only beginning to be applied in the California’s Sacramento–San Joaquin Delta. We draw from two assessments of adaptive management in the Delta and examples of its use elsewhere to suggest how the process can be facilitated. Although a highly structured adaptive-management process may not always be needed, several elements are essential. Adaptive management should begin by clearly identifying the problem, goals, and objectives; recognizing uncertainties; identifying decision points and alternative approaches; recognizing when adjustments are needed and having the flexibility to make them; and considering societal and political constraints. Model complexity should be matched to that of the system and management needs; experiments can help unravel causal relationships. Monitoring, analyses, and syntheses require comprehensive data-management systems. More frequent and organized communications among scientists, managers, stakeholders, and decision-makers are necessary. We propose the establishment of an “Adaptive Management Team” to coordinate efforts across the management spectrum of the Delta and to provide guidance and link individual projects to shared approaches and experiences. Reliable long-term support will be needed to assess results of management actions, adjust approaches where improvement is likely, and strive toward the legislated goals of enhancing the Delta ecosystem while also providing reliable water supplies to much of California, and doing both these things in a manner that protects values of the Delta as a place where people live and

Land subsidence along the Delta-Mendota Canal in the northern part of the San Joaquin Valley, California, 2003-10

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Sneed, Michelle; Brandt, Justin; Solt, Mike

2013-01-01

Extensive groundwater withdrawal from the unconsolidated deposits in the San Joaquin Valley caused widespread aquifer-system compaction and resultant land subsidence from 1926 to 1970—locally exceeding 8.5 meters. The importation of surface water beginning in the early 1950s through the Delta-Mendota Canal and in the early 1970s through the California Aqueduct resulted in decreased pumping, initiation of water-level recovery, and a reduced rate of compaction in some areas of the San Joaquin Valley. However, drought conditions during 1976–77 and 1987–92, and drought conditions and regulatory reductions in surface-water deliveries during 2007–10, decreased surface-water availability, causing pumping to increase, water levels to decline, and renewed compaction. Land subsidence from this compaction has reduced freeboard and flow capacity of the Delta-Mendota Canal, the California Aqueduct, and other canals that deliver irrigation water and transport floodwater. The U.S. Geological Survey, in cooperation with the U.S. Bureau of Reclamation and the San Luis and Delta-Mendota Water Authority, assessed land subsidence in the vicinity of the Delta-Mendota Canal as part of an effort to minimize future subsidence-related damages to the canal. The location, magnitude, and stress regime of land-surface deformation during 2003–10 were determined by using extensometer, Global Positioning System (GPS), Interferometric Synthetic Aperture Radar (InSAR), spirit leveling, and groundwater-level data. Comparison of continuous GPS, shallow extensometer, and groundwater-level data, combined with results from a one-dimensional model, indicated the vast majority of the compaction took place beneath the Corcoran Clay, the primary regional confining unit. Land-surface deformation measurements indicated that much of the northern portion of the Delta-Mendota Canal (Clifton Court Forebay to Check 14) was fairly stable or minimally subsiding on an annual basis; some areas showed

Factors influencing the biogeochemistry of sedimentary carbon and phosphorus in the Sacramento-San Joaquin Delta

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Nilsen, E.B.; Delaney, M.L.

2005-01-01

This study characterizes organic carbon (Corganic) and phosphorus (P) geochemistry in surface sediments of the Sacramento-San Joaquin Delta, California. Sediment cores were collected from five sites on a sample transect from the edge of the San Francisco Bay eastward to the freshwater Consumnes River. The top 8 cm of each core were analyzed (in 1-cm intervals) for Corganic, four P fractions, and redox-sensitive trace metals (uranium and manganese). Sedimentary Corganic concentrations and Corganic:P ratios decreased, while reactive P concentrations increased moving inland in the Delta. The fraction of total P represented by organic P increased inland, while that of authigenic P was higher bayward than inland reflecting increased diagenetic alteration of organic matter toward the bayward end of the transect. The redox indicator metals are consistent with decreasing sedimentary suboxia inland. The distribution of P fractions and C:P ratios reflect the presence of relatively labile organic matter in upstream surface sediments. Sediment C and P geochemistry is influenced by site-specific particulate organic matter sources, the sorptive power of the sedimentary material present, physical forcing, and early diagenetic transformations presumably driven by Corganic oxidation. ?? 2005 Estuarine Research Federation.

Investigating Particle Transport and Fate in the Sacramento–San Joaquin Delta Using a Particle-Tracking Model

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Wim J. Kimmerer

2008-02-01

Full Text Available Movements of pelagic organisms in the tidal freshwater regions of estuaries are sensitive to the movements of water. In the Sacramento-San Joaquin Delta—the tidal freshwater reach of the San Francisco Estuary—such movements are key to losses of fish and other organisms to entrainment in large water-export facilities. We used the Delta Simulation Model-2 hydrodynamic model and its particle tracking model to examine the principal determinants of entrainment losses to the export facilities and how movement of fish through the Delta may be influenced by flow. We modeled 936 scenarios for 74 different conditions of flow, diversions, tides, and removable barriers to address seven questions regarding hydrodynamics and entrainment risk in the Delta. Tide had relatively small effects on fate and residence time of particles. Release location and hydrology interacted to control particle fate and residence time. The ratio of flow into the export facilities to freshwater flow into the Delta (export:inflow or EI ratio was a useful predictor of entrainment probability if the model were allowed to run long enough to resolve particles’ ultimate fate. Agricultural diversions within the Delta increased total entrainment losses and altered local movement patterns. Removable barriers in channels of the southern Delta and gates in the Delta Cross Channel in the northern Delta had minor effects on particles released in the rivers above these channels. A simulation of losses of larval delta smelt showed substantial cumulative losses depending on both inflow and export flow. A simulation mimicking mark–recapture experiments on Chinook salmon smolts suggested that both inflow and export flow may be important factors determining survival of salmon in the upper estuary. To the extent that fish behave passively, this model is probably suitable for describing Delta-wide movement, but it is less suitable for smaller scales or alternative configurations of the Delta.

Economic Costs and Adaptations for Alternative Regulations of California's Sacramento–San Joaquin Delta

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Stacy K. Tanaka

2011-07-01

Full Text Available Stacy K. Tanaka, Christina R. Connell–Buck, Kaveh Madani, Josue Medellín-Azuara, Jay R. Lund, and Ellen Hanakdoi: http://dx.doi.org/10.15447/sfews.2014v9iss2art4Water exports from California’s Sacramento–San Joaquin Delta are an environmental concern because they reduce net outflows of fresh water from the Delta, and can entrain fish and disrupt flows within the Delta. If exports were no longer pumped from within the Delta, the regulatory issue becomes one of maintaining appropriate flows into and out of the Delta. This paper presents the results of two sets of hydro-economic optimization modeling runs, which were developed to represent a range of modified Delta operations and their economic and operational effects on California’s water supply system. The first set of runs represents decreasing export capacity from the Delta. The second set increases minimum net Delta outflow (MNDO requirements. The hydro-economic model seeks the least–cost statewide water management scheme for water supply, including a wide range of resources and water management options. Results show that reducing exports or increasing MNDO requirements increase annual average statewide water scarcity, scarcity costs, and operating costs (from greater use of desalination, wastewater recycling, water treatment, and pumping. Effects of reduced exports are especially concentrated in agricultural communities in the southern Central Valley because of their loss of access to overall water supply exports and their ability to transfer remaining water to southern California. Increased outflow requirements increase water scarcity and associated costs throughout California. For an equivalent amount of average Delta outflows, statewide costs increase more rapidly when exports alone are reduced than when minimum outflow requirements are increased and effects are more widely distributed statewide.

Levee Seepage Detection in the Sacramento-San Joaquin Delta Using Polarimetric SAR

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An, K.; Jones, C. E.; Bekaert, D. P.

2017-12-01

The Sacramento-San Joaquin Delta's extensive levee system protects over 2,800 km2 of reclaimed lands and serves as the main irrigation and domestic water supply for the state of California. However, ongoing subsidence and disaster threats from floods and earthquakes make the Delta levee system highly vulnerable, endangering water supplies for 23 million California residents and 2.5 million acres of agricultural land. Levee failure in the Delta can cause saltwater intrusion from San Francisco Bay, reducing water quality and curtailing water exports to residents, commercial users, and farmers. To protect the Delta levee system, it is essential to search for signs of seepage in which water is piping through or beneath levees, which can be associated with deformation of the levees themselves. Until now, in-situ monitoring has largely been applied, however, this is a time-consuming and expensive approach. We use data acquired with NASA's UAVSAR (Uninhabited Aerial Vehicle Synthetic Aperture Radar) airborne radar instrument to identify and characterize levee seepages and associated land subsidence through advanced remote sensing technologies. The high spatial resolution of UAVSAR can help to direct surveys to areas that are likely to be experiencing damage. UAVSAR is an L-band airborne sensor with high signal-to-noise ratio, repeat flight track accuracy, and spatial resolution of 7x7 m2 (for multi-looked products) that is necessary for detailed levee monitoring. The adaptability of radar instruments in their ability to see through smoke, haze, and clouds during the day or night, is especially relevant during disaster events, when cloud cover or lack of solar illumination inhibits traditional visual surveys of damage. We demonstrate the advantages of combining polarimetric radar imagery with geographic information systems (GIS) datasets in locating seepage features along critical levee infrastructure in the Delta for 2009-2016. The ability to efficiently locate potential

Site Response and Basin Waves in the Sacramento–San Joaquin Delta, California

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Fletcher, Jon Peter B.; Boatwright, John

2013-01-01

The Sacramento–San Joaquin Delta is an inland delta at the western extent of the Central Valley. Levees were built around swampy islands starting after the Civil War to reclaim these lands for farming. Various studies show that these levees could fail in concert from shaking from a major local or regional earthquake resulting in salty water from the San Francisco Bay contaminating the water in the Delta. We installed seismographs around the Delta and on levees to assess the contribution of site response to the seismic hazard of the levees. Cone penetrometer testing shows that the upper 10 s of meters of soil in the Delta have shear‐wave velocities of about 200  m/s, which would give a strong site response. Seismographs were sited following two strategies: pairs of stations to compare the response of the levees to nearby sites, and a more regional deployment in the Delta. Site response was determined in two different ways: a traditional spectral ratio (TSR) approach of S waves using station BDM of the Berkeley Digital Seismic Net as a reference site, and using SH/SV ratios of noise (or Nakamura’s method). Both estimates usually agree in spectral character for stations whose response is dominated by a resonant peak, but the most obvious peaks in the SH/SV ratios usually are about two‐thirds as large as the main peaks in the TSRs. Levee sites typically have large narrow resonances in the site response function compared to sites in the farmland of the Delta. These resonances, at a frequency of about 1–3 Hz, have amplitudes of about 15 with TSR and 10–12 with Nakamura’s method. Sites on farmland in the Delta also have amplifications, but these are typically broader and not as resonant in appearance. Late (slow) Rayleigh waves were recorded at stations in the Delta, have a dominant period of about one second, and are highly monochromatic. Results from a three‐station array at the Holland Marina suggest that they have a phase velocity of about

Recent Advances in Understanding Flow Dynamics and Transport of Water-Quality Constituents in the Sacramento–San Joaquin River Delta

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David H. Schoellhamer

2016-12-01

Full Text Available doi: https://doi.org/10.15447/sfews.2016v14iss4art1This paper, part of the collection of research comprising the State of Bay–Delta Science 2016, describes advances during the past decade in understanding flow dynamics and how water-quality constituents move within California’s Sacramento–San Joaquin River Delta (Delta. Water-quality constituents include salinity, heat, oxygen, nutrients, contaminants, organic particles, and inorganic particles. These constituents are affected by water diversions and other human manipulations of flow, and they greatly affect the quantity and quality of benthic, pelagic, and intertidal habitat in the Delta. The Pacific Ocean, the Central Valley watershed, human intervention, the atmosphere, and internal biogeochemical processes are all drivers of flow and transport in the Delta. These drivers provide a conceptual framework for presenting recent findings. The tremendous expansion of acoustic and optical instruments deployed in the Delta over the past decade has greatly improved our understanding of how tidal variability affects flow and transport. Sediment is increasingly viewed as a diminishing resource needed to sustain pelagic habitat and tidal marsh, especially as sea level rises. Connections among the watershed, Delta, and San Francisco Bay that have been quantified recently highlight that a landscape view of this system is needed, rather than consideration of each region in isolation. We discuss interactions of multiple drivers and information gaps.

Challenges Facing the Sacramento–San Joaquin Delta: Complex, Chaotic, or Simply Cantankerous?

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Samuel N. Luoma

2015-09-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2015v13iss3art7Freshwater is a scarce and precious resource in California; its overall value is being made clear by the current severe drought. The Sacramento–San Joaquin Delta is a critical node in a complex water supply system that extends throughout much of the western U.S. wherein demand is exceeding supply. The Delta also underpins a major component of the U.S. economy, helps feed a substantial part of the country, is a unique and valuable ecological resource, and is a place with a rich cultural heritage. Sustaining the Delta is a problem that manifests itself in many dimensions including the physical structure of the Delta, the conflicting demands for water, changing water quality, rapidly evolving ecological character, and high institutional complexity. The problems of the California Delta are increasingly complex, sometimes chaotic, and always contentious. There is general agreement that current management will sustain neither the Delta ecosystem nor high-quality water exports, as required under the Delta Reform Act, so there is a renewed urgency to address all dimensions of the problem aggressively. Sustainable management of the Delta ecosystem and California’s highly variable water supply, in the face of global climate change, will require bold political decisions that include adjustments to the infrastructure but give equal emphasis to chronic overuse and misuse of water, promote enhanced efficiency of water use, and facilitate new initiatives for ecosystem recovery. This new approach will need to be underpinned by collaborative science that supports ongoing evaluation and re-adjustment of actions. Problems like the Delta are formally “wicked" problems that cannot be “solved” in the traditional sense, but they can be managed with appropriate knowledge and flexible institutions. Where possible, it is advisable to approach major actions incrementally, with an eye toward avoiding

An introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

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Kraus, Tamara E.C.; Bergamaschi, Brian A.; Downing, Bryan D.

2017-07-11

Executive SummaryThis report is the first in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). This first report provides an introduction to the reasons for and fundamental concepts behind collecting HF measurements, and describes the benefits associated with a real-time, continuous, HF, multi-parameter water quality monitoring station network that is co-located with flow stations. It then provides examples of how HF nutrient measurements have improved our understating of nutrient sources and cycling in aquatic systems worldwide, followed by specific examples from the Delta. These examples describe the ways in which HF instrumentation may be used for both fixed-station and spatial assessments. The overall intent of this document is to describe how HF measurements currently (2017) are being used in the Delta to examine the relationship between nutrient concentrations, nutrient cycling, and aquatic habitat conditions.The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the northern Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first, at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event (for example, storms, reservoir releases, phytoplankton blooms) timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. This multi-scale, high variability affects calculation of fluxes and loads, indicating that HF

Losses of Sacramento River Chinook Salmon and Delta Smelt to Entrainment in Water Diversions in the Sacramento–San Joaquin Delta

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Wim J. Kimmerer

2008-06-01

Full Text Available Pumping at the water export facilities in the southern Sacramento-San Joaquin Delta kills fish at and near the associated fish-salvage facilities. Correlative analyses of salvage counts with population indices have failed to provide quantitative estimates of the magnitude of this mortality. I estimated the proportional losses of Sacramento River Chinook salmon (Oncorhynchus tshawytscha and delta smelt (Hypomesus transpacificus to place these losses in a population context. The estimate for salmon was based on recoveries of tagged smolts released in the upper Sacramento River basin, and recovered at the fish-salvage facilities in the south Delta and in a trawling program in the western Delta. The proportion of fish salvaged increased with export flow, with a mean value around 10% at the highest export flows recorded. Mortality was around 10% if pre-salvage losses were about 80%, but this value is nearly unconstrained. Losses of adult delta smelt in winter and young delta smelt in spring were estimated from salvage data (adults corrected for estimated pre-salvage survival, or from trawl data in the southern Delta (young. These losses were divided by population size and accumulated over the respective seasons. Losses of adult delta smelt were 1–50% (median 15% although the highest value may have been biased upward. Daily losses of larvae and juveniles were 0–8%, and seasonal losses accumulated were 0–25% (median 13%. The effect of these losses on population abundance was obscured by subsequent 50-fold variability in survival from summer to fall.

Tomographic Rayleigh wave group velocities in the Central Valley, California, centered on the Sacramento/San Joaquin Delta

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Fletcher, Jon B.; Erdem, Jemile; Seats, Kevin; Lawrence, Jesse

2016-04-01

If shaking from a local or regional earthquake in the San Francisco Bay region were to rupture levees in the Sacramento/San Joaquin Delta, then brackish water from San Francisco Bay would contaminate the water in the Delta: the source of freshwater for about half of California. As a prelude to a full shear-wave velocity model that can be used in computer simulations and further seismic hazard analysis, we report on the use of ambient noise tomography to build a fundamental mode, Rayleigh wave group velocity model for the region around the Sacramento/San Joaquin Delta in the western Central Valley, California. Recordings from the vertical component of about 31 stations were processed to compute the spatial distribution of Rayleigh wave group velocities. Complex coherency between pairs of stations was stacked over 8 months to more than a year. Dispersion curves were determined from 4 to about 18 s. We calculated average group velocities for each period and inverted for deviations from the average for a matrix of cells that covered the study area. Smoothing using the first difference is applied. Cells of the model were about 5.6 km in either dimension. Checkerboard tests of resolution, which are dependent on station density, suggest that the resolving ability of the array is reasonably good within the middle of the array with resolution between 0.2 and 0.4°. Overall, low velocities in the middle of each image reflect the deeper sedimentary syncline in the Central Valley. In detail, the model shows several centers of low velocity that may be associated with gross geologic features such as faulting along the western margin of the Central Valley, oil and gas reservoirs, and large crosscutting features like the Stockton arch. At shorter periods around 5.5 s, the model's western boundary between low and high velocities closely follows regional fault geometry and the edge of a residual isostatic gravity low. In the eastern part of the valley, the boundaries of the low

Tomographic Rayleigh-wave group velocities in the Central Valley, California centered on the Sacramento/San Joaquin Delta

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Fletcher, Jon Peter B.; Erdem, Jemile; Seats, Kevin; Lawrence, Jesse

2016-01-01

If shaking from a local or regional earthquake in the San Francisco Bay region were to rupture levees in the Sacramento/San Joaquin Delta then brackish water from San Francisco Bay would contaminate the water in the Delta: the source of fresh water for about half of California. As a prelude to a full shear-wave velocity model that can be used in computer simulations and further seismic hazard analysis, we report on the use of ambient noise tomography to build a fundamental-mode, Rayleigh-wave group velocity model for the region around the Sacramento/San Joaquin Delta in the western Central Valley, California. Recordings from the vertical component of about 31 stations were processed to compute the spatial distribution of Rayleigh wave group velocities. Complex coherency between pairs of stations were stacked over 8 months to more than a year. Dispersion curves were determined from 4 to about 18 seconds. We calculated average group velocities for each period and inverted for deviations from the average for a matrix of cells that covered the study area. Smoothing using the first difference is applied. Cells of the model were about 5.6 km in either dimension. Checkerboard tests of resolution, which is dependent on station density, suggest that the resolving ability of the array is reasonably good within the middle of the array with resolution between 0.2 and 0.4 degrees. Overall, low velocities in the middle of each image reflect the deeper sedimentary syncline in the Central Valley. In detail, the model shows several centers of low velocity that may be associated with gross geologic features such as faulting along the western margin of the Central Valley, oil and gas reservoirs, and large cross cutting features like the Stockton arch. At shorter periods around 5.5s, the model’s western boundary between low and high velocities closely follows regional fault geometry and the edge of a residual isostatic gravity low. In the eastern part of the valley, the boundaries

Innovation in monitoring: The U.S. Geological Survey Sacramento–San Joaquin River Delta, California, flow-station network

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Burau, Jon; Ruhl, Cathy; Work, Paul A.

2016-01-29

The U.S. Geological Survey (USGS) installed the first gage to measure the flow of water into California’s Sacramento–San Joaquin River Delta from the Sacramento River in the late 1800s. Today, a network of 35 hydro-acoustic meters measure flow throughout the delta. This region is a critical part of California’s freshwater supply and conveyance system. With the data provided by this flow-station network—sampled every 15 minutes and updated to the web every hour—state and federal water managers make daily decisions about how much freshwater can be pumped for human use, at which locations, and when. Fish and wildlife scientists, working with water managers, also use this information to protect fish species affected by pumping and loss of habitat. The data are also used to help determine the success or failure of efforts to restore ecosystem processes in what has been called the “most managed and highly altered” watershed in the country.

PEAT ACCRETION HISTORIES DURING THE PAST 6000 YEARS IN MARSHES OF THE SACRAMENTO - SAN JOAQUIN DELTA, CALIFORNIA, USA

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Drexler, J Z; de Fontaine, C S; Brown, T A

2009-07-20

Peat cores were collected in 4 remnant marsh islands and 4 drained, farmed islands throughout the Sacramento - San Joaquin Delta of California in order to characterize the peat accretion history of this region. Radiocarbon age determination of marsh macrofossils at both marsh and farmed islands showed that marshes in the central and western Delta started forming between 6030 and 6790 cal yr BP. Age-depth models for three marshes were constructed using cubic smooth spline regression models. The resulting spline fit models were used to estimate peat accretion histories for the marshes. Estimated accretion rates range from 0.03 to 0.49 cm yr{sup -1} for the marsh sites. The highest accretion rates are at Browns Island, a marsh at the confluence of the Sacramento and San Joaquin rivers. Porosity was examined in the peat core from Franks Wetland, one of the remnant marsh sites. Porosity was greater than 90% and changed little with depth indicating that autocompaction was not an important process in the peat column. The mean contribution of organic matter to soil volume at the marsh sites ranges from 6.15 to 9.25% with little variability. In contrast, the mean contribution of inorganic matter to soil volume ranges from 1.40 to 8.45% with much greater variability, especially in sites situated in main channels. These results suggest that marshes in the Delta can be viewed as largely autochthonous vs. allochthonous in character. Autochthonous sites are largely removed from watershed processes, such as sediment deposition and scour, and are dominated by organic production. Allochthonous sites have greater fluctuations in accretion rates due to the variability of inorganic inputs from the watershed. A comparison of estimated vertical accretion rates with 20th century rates of global sea-level rise shows that currently marshes are maintaining their positions in the tidal frame, yet this offers little assurance of sustainability under scenarios of increased sea-level rise in

Levee Vertical Land Motion Changes in the Sacramento-San Joaquin Delta

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Telling, J. W.; Brooks, B. A.; Glennie, C. L.; Ericksen, T. L.; Knowles, N.

2017-12-01

The Sacramento-San Joaquin Delta is home to numerous islands that provide economically and agriculturally important land. However, the island interiors are sinking and most sit below sea level, making the levee roads that surround the islands vital for their continued health and productivity. Airborne LiDAR (Light Detection and Ranging) data over the islands was collected in 2007 by the California Department of Water Resources and mobile LiDAR data was collected along the levee roads on Bacon, Bouldin, Jersey, and Brannan-Andrus Islands in 2015 and 2016 by the USGS. These datasets provide high resolution topographic models with 8 year separation that can be used to examine topographic change along the levees. A cross-section of each dataset was output along the approximate centerline of the levee road, so that profiles of the 2007 and 2015/2016 LiDAR observations could be compared. Regions of levee road subsidence and of levee road construction and reinforcement on the order of 0-3 centimeters per year were evident in locations around the islands. There is a high degree of spatial variability of these rates even for individual islands. These results were compared to the levee road maps published by the CA Delta Stewardship Council and it was found that the regions of reinforcement and subsidence did not always align between the published maps and the LiDAR data. Additionally, the levee road heights and rates of change, in regions of road subsidence, were compared to sea level rise projections to evaluate the risk that rising sea level may pose to the islands in the future.

Erratum dated 2014 June 25: Fate and Transport of Three Pharmaceuticals in the Sacramento-San Joaquin Delta

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Minta M. Schaefer

2013-06-01

Full Text Available Pharmaceuticals and personal care products (PPCPs are found in surface waters worldwide. Wastewater treatment plant effluent is a major source of these contaminants. The Sacramento–San Joaquin Delta (Delta is a unique aquatic ecosystem, a source of drinking water for over 25 million Californians, and a primary source of water for Central Valley agriculture. The sharp decline of four pelagic fish species in the Delta in the last decade is just one of several indicators that the ecosystem is severely impaired. Several wastewater treatment plants (WWTPs discharge into the Delta, directly or through tributaries. The presence of PPCPs in the Delta has received very little attention relative to the immense effort underway to rehabilitate the ecosystem. This study determined concentrations of PPCPs in the Sacramento River in the vicinity of the Sacramento Regional Wastewater Treatment Plant using passive sampler monitoring. These data were used to estimate loads of three of the detected pharmaceuticals (carbamazepine, fluoxetine, and trimethoprim from nine other WWTPs that discharge to the Delta. The 2-D, finite element, Resource Management Associates (RMA Delta Model was then applied to determine the distribution that might result from these discharges. The model was run for the 2006, 2007, and 2009 water years. Results indicate that it is feasible that WWTP discharges could result in chronic presence of these pharmaceuticals at low ng L-1 levels at all 45 model output locations and, therefore, aquatic organisms within the Delta may be continually exposed to these contaminants.

Dispersion Mechanisms of a Tidal River Junction in the Sacramento–San Joaquin Delta, California

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Karla T. Gleichauf

2014-12-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2014v12iss4art1In branching channel networks, such as in the Sacramento–San Joaquin River Delta, junction flow dynamics contribute to dispersion of ecologically important entities such as fish, pollutants, nutrients, salt, sediment, and phytoplankton. Flow transport through a junction largely arises from velocity phasing in the form of divergent flow between junction channels for a portion of the tidal cycle. Field observations in the Georgiana Slough junction, which is composed of the North and South Mokelumne rivers, Georgiana Slough, and the Mokelumne River, show that flow phasing differences between these rivers arise from operational, riverine, and tidal forcing. A combination of Acoustic Doppler Current Profile (ADCP boat transecting and moored ADCPs over a spring–neap tidal cycle (May to  June 2012 monitored the variability of spatial and temporal velocity, respectively. Two complementary drifter studies enabled assessment of local transport through the junction to identify small-scale intrajunction dynamics. We supplemented field results with numerical simulations using the SUNTANS model to demonstrate the importance of phasing offsets for junction transport and dispersion. Different phasing of inflows to the junction resulted in scalar patchiness that is characteristic of MacVean and Stacey’s (2011 advective tidal trapping. Furthermore, we observed small-scale junction flow features including a recirculation zone and shear layer, which play an important role in intra-junction mixing over time scales shorter than the tidal cycle (i.e., super-tidal time scales. The study period spanned open- and closed-gate operations at the Delta Cross Channel. Synthesis of field observations and modeling efforts suggest that management operations related to the Delta Cross Channel can strongly affect transport in the Delta by modifying the relative contributions of tidal and riverine flows, thereby

Geological literature on the San Joaquin Valley of California

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Maher, J.C.; Trollman, W.M.; Denman, J.M.

1973-01-01

The following list of references includes most of the geological literature on the San Joaquin Valley and vicinity in central California (see figure 1) published prior to January 1, 1973. The San Joaquin Valley comprises all or parts of 11 counties -- Alameda, Calaveras, Contra Costa, Fresno, Kern, Kings, Madera, Merced, San Joaquin, Stanislaus, and Tulare (figure 2). As a matter of convenient geographical classification the boundaries of the report area have been drawn along county lines, and to include San Benito and Santa Clara Counties on the west and Mariposa and Tuolumne Counties on the east. Therefore, this list of geological literature includes some publications on the Diablo and Temblor Ranges on the west, the Tehachapi Mountains and Mojave Desert on the south, and the Sierra Nevada Foothills and Mountains on the east.

A compilation of U.S. Geological Survey pesticide concentration data for water and sediment in the Sacramento–San Joaquin Delta region: 1990–2010

Science.gov (United States)

Orlando, James L.

2013-01-01

Beginning around 2000, abundance indices of four pelagic fishes (delta smelt, striped bass, longfin smelt, and threadfin shad) within the San Francisco Bay and Sacramento–San Joaquin Delta began to decline sharply (Sommer and others, 2007). These declines collectively became known as the pelagic organism decline (POD). No single cause has been linked to this decline, and current theories suggest that combinations of multiple stressors are likely to blame. Contaminants (including current-use pesticides) are one potential stressor being investigated for its role in the POD (Anderson, 2007). Pesticide concentration data collected by the U.S. Geological Survey (USGS) at multiple sites in the delta region over the past two decades are critical to understanding the potential effects of current-use pesticides on species of concern as well as the overall health of the delta ecosystem. In April 2010, a compilation of contaminant data for the delta region was published by the State Water Resources Control Board (Johnson and others, 2010). Pesticide occurrence was the major focus of this report, which concluded that “there was insufficient high quality data available to make conclusions about the potential role of specific contaminants in the POD.” The report cited multiple sources; however, data collected by the USGS were not included in the publication even though these data met all criteria listed for inclusion in the report. What follows is a summary of publicly available USGS data for pesticide concentrations in surface water and sediments within the Sacramento–San Joaquin Delta region from the years 1990 through 2010. Data were retrieved though the USGS National Water Information System (NWIS) database, a publicly available online-data repository (U.S. Geological Survey, 1998), and from published USGS reports (also available online at http://pubs.er.usgs.gov/). The majority of the data were collected in support of two long term USGS monitoring programs�

Riparian Habitat - San Joaquin River

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California Natural Resource Agency — The immediate focus of this study is to identify, describe and map the extent and diversity of riparian habitats found along the main stem of the San Joaquin River,...

Determining Water Quality Trends in the Sacramento-San Joaquin Delta Watershed in the Face of Climate Change

Science.gov (United States)

Kynett, K.; Azimi-Gaylon, S.; Doidic, C.

2014-12-01

The Sacramento-San Joaquin Delta and Suisun Marsh (Delta) is the largest estuary on the West Coast of the Americas and is a resource of local, State, and national significance. The Delta is simultaneously the most critical component of California's water supply, a primary focus of the state's ecological conservation measures, and a vital resource deeply imperiled by degraded water quality. Delta waterbodies are identified as impaired by salinity, excess nutrients, low dissolved oxygen, pathogens, pesticides, heavy metals, and other contaminants. Climate change is expected to exacerbate the impacts of existing stressors in the Delta and magnify the challenges of managing this natural resource. A clear understanding of the current state of the watershed is needed to better inform scientists, decision makers, and the public about potential impacts from climate change. The Delta Watershed Initiative Network (Delta WIN) leverages the ecological benefits of healthy watersheds, and enhances, expands and creates opportunities for greater watershed health by coordinating with agencies, established programs, and local organizations. At this critical junction, Delta WIN is coordinating data integration and analysis to develop better understanding of the existing and emerging water quality concerns. As first steps, Delta WIN is integrating existing water quality data, analyzing trends, and monitoring to fill data gaps and to evaluate indicators of climate change impacts. Available data will be used for trend analysis; Delta WIN will continue to monitor where data is incomplete and new questions arise. Understanding how climate change conditions may affect water quality will be used to inform efforts to build resilience and maintain water quality levels which sustain aquatic life and human needs. Assessments of historical and new data will aid in recognition of potential climate change impacts and in initiating implementation of best management practices in collaboration with

Effect of tides, river flow, and gate operations on entrainment of juvenile salmon into the interior Sacramento–San Joaquin River Delta

Science.gov (United States)

Perry, Russell W.; Brandes, Patricia L.; Burau, Jon R.; Sandstrom, Philip T.; Skalski, John R.

2015-01-01

Juvenile Chinook Salmon Oncorhynchus tshawytscha emigrating from natal tributaries of the Sacramento River, California, must negotiate the Sacramento-San Joaquin River Delta (hereafter, the Delta), a complex network of natural and man-made channels linking the Sacramento River with San Francisco Bay. Fish that enter the interior and southern Delta—the region to the south of the Sacramento River where water pumping stations are located—survive at a lower rate than fish that use alternative migration routes. Consequently, total survival decreases as the fraction of the population entering the interior Delta increases, thus spurring management actions to reduce the proportion of fish that are entrained into the interior Delta. To better inform management actions, we modeled entrainment probability as a function of hydrodynamic variables. We fitted alternative entrainment models to telemetry data that identified when tagged fish in the Sacramento River entered two river channels leading to the interior Delta (Georgiana Slough and the gated Delta Cross Channel). We found that the probability of entrainment into the interior Delta through both channels depended strongly on the river flow and tidal stage at the time of fish arrival at the river junction. Fish that arrived during ebb tides had a low entrainment probability, whereas fish that arrived during flood tides (i.e., when the river's flow was reversed) had a high probability of entering the interior Delta. We coupled our entrainment model with a flow simulation model to evaluate the effect of nighttime closures of the Delta Cross Channel gates on the daily probability of fish entrainment into the interior Delta. Relative to 24-h gate closures, nighttime closures increased daily entrainment probability by 3 percentage points on average if fish arrived at the river junction uniformly throughout the day and by only 1.3 percentage points if 85% of fish arrived at night. We illustrate how our model can be used to

delta-vision

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California Natural Resource Agency — Delta Vision is intended to identify a strategy for managing the Sacramento-San Joaquin Delta as a sustainable ecosystem that would continue to support environmental...

Quaternary geology of Alameda County, and parts of Contra Costa, Santa Clara, San Mateo, San Francisco, Stanislaus, and San Joaquin counties, California: a digital database

Science.gov (United States)

Helley, E.J.; Graymer, R.W.

1997-01-01

Alameda County is located at the northern end of the Diablo Range of Central California. It is bounded on the north by the south flank of Mount Diablo, one of the highest peaks in the Bay Area, reaching an elevation of 1173 meters (3,849 ft). San Francisco Bay forms the western boundary, the San Joaquin Valley borders it on the east and an arbitrary line from the Bay into the Diablo Range forms the southern boundary. Alameda is one of the nine Bay Area counties tributary to San Francisco Bay. Most of the country is mountainous with steep rugged topography. Alameda County is covered by twenty-eight 7.5' topographic Quadrangles which are shown on the index map. The Quaternary deposits in Alameda County comprise three distinct depositional environments. One, forming a transgressive sequence of alluvial fan and fan-delta facies, is mapped in the western one-third of the county. The second, forming only alluvial fan facies, is mapped in the Livermore Valley and San Joaquin Valley in the eastern part of the county. The third, forming a combination of Eolian dune and estuarine facies, is restricted to the Alameda Island area in the northwestern corner of the county.

Timber resource statistics for the San Joaquin and southern resource areas of California.

Science.gov (United States)

Karen L. Waddell; Patricia M. Bassett

1997-01-01

This report is a summary of timber resource statistics for the San Joaquin and Southern Resource Areas of California, which include Alpine, Amador, Calaveras, Fresno, Imperial, Inyo, Kern, Kings, Los Angeles, Madera, Mariposa, Merced, Mono, Orange, Riverside, San Bernardino, San Diego, San Joaquin, Stanislaus, Tulare, and Tuolumne Counties. Data were collected as part...

Distribution and Habitat Associations of California Black Rail (Laterallus jamaicensis cortuniculus in the Sacramento–San Joaquin Delta

Directory of Open Access Journals (Sweden)

Danika C. Tsao

2015-12-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2015v13iss4art4Past studies documenting the distribution and status of state “Threatened" California black rail (Laterallus jamaicensis coturniculus; hereafter black rail have largely omitted the Sacramento—San Joaquin Delta (hereafter Delta. During March to May of 2009–2011, we conducted call–playback surveys to assess the status of the species within a wide range of wetland habitats of the central Delta region. We detected black rails at 21 of 107 discrete wetland sites, primarily on in-channel islands with dense cover. To better understand the habitat and land cover characteristics, we developed a model of habitat suitability from these occurrence data and a fine-scale vegetation and land use dataset using MaxEnt. We also evaluated differences in the size of wetlands at sites where black rails were detected versus where they were not. Through surveys and quantitative modeling, we found black rail presence differed from other regions within California and Arizona, in that it was positively associated with tall (1 to 5 m emergent vegetation interspersed with riparian shrubs. Specific plants correlated with black rail presence included emergent wetland (Bolboschoenus acutus, B. californicus, B. acutus, Typha angustifolia, T. latifolia, Phragmites australis and riparian (Salix exigua, S. lasiolepis, Rosa californica, Rubus discolor, Cornus sericea species. Median patch size was significantly larger and perimeter-to-area ratios were significantly lower at wetland sites where black rails were found. These results provide a preliminary characterization of black rail habitat in the Delta region and highlight the need for better understanding of this listed species’ population size and habitat use in the region, in light of anticipated climate change effects and proposed large-scale restoration in the Delta.

Historic, Recent, and Future Subsidence, Sacramento-San Joaquin Delta, California, USA

Directory of Open Access Journals (Sweden)

Steven J Deverel

2010-08-01

Full Text Available To estimate and understand recent subsidence, we collected elevation and soils data on Bacon and Sherman islands in 2006 at locations of previous elevation measurements. Measured subsidence rates on Sherman Island from 1988 to 2006 averaged 1.23 cm/year (0.5 in/yr and ranged from 0.7 to 1.7 cm/year (0.3 to 0.7 in/year. Subsidence rates on Bacon Island from 1978 to 2006 averaged 2.2 cm/year (0.9 in/yr and ranged from 1.5 to 3.7 cm/year (0.6 to 1.5 in/yr. Changing land-management practices and decreasing soil organic matter content have resulted in decreasing subsidence rates. On Sherman Island, rates from 1988 to 2006 were about 35% of 1910 to 1988 rates. For Bacon Island, rates from 1978 to 2006 were about 40% less than the 1926-1958 rates. To help understand causes and estimate future subsidence, we developed a subsidence model, SUBCALC, that simulates oxidation and carbon losses, consolidation, wind erosion, and burning and changing soil organic matter content. SUBCALC results agreed well with measured land-surface elevation changes. We predicted elevation decreases from 2007 to 2050 will range from a few centimeters to over 1.3 m (4.3 ft. The largest elevation declines will occur in the central Sacramento-San Joaquin Delta. From 2007 to 2050, the most probable estimated increase in volume below sea level is 349,956,000 million cubic meters (281,300 acre-feet. Consequences of this continuing subsidence include increased drainage loads of water quality constituents of concern, seepage onto islands, and decreased arability.

76 FR 45212 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-07-28

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... proposing to approve San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) Rule 3170... the environment. San Joaquin Valley Unified Air Pollution Control District SJVUAPCD is an extreme...

Bathymetric survey and digital elevation model of Little Holland Tract, Sacramento-San Joaquin Delta, California

Science.gov (United States)

Snyder, Alexander G.; Lacy, Jessica R.; Stevens, Andrew W.; Carlson, Emily M.

2016-06-10

The U.S. Geological Survey conducted a bathymetric survey in Little Holland Tract, a flooded agricultural tract, in the northern Sacramento-San Joaquin Delta (the “Delta”) during the summer of 2015. The new bathymetric data were combined with existing data to generate a digital elevation model (DEM) at 1-meter resolution. Little Holland Tract (LHT) was historically diked off for agricultural uses and has been tidally inundated since an accidental levee breach in 1983. Shallow tidal regions such as LHT have the potential to improve habitat quality in the Delta. The DEM of LHT was developed to support ongoing studies of habitat quality in the area and to provide a baseline for evaluating future geomorphic change. The new data comprise 138,407 linear meters of real-time-kinematic (RTK) Global Positioning System (GPS) elevation data, including both bathymetric data collected from personal watercraft and topographic elevations collected on foot at low tide. A benchmark (LHT15_b1) was established for geodetic control of the survey. Data quality was evaluated both by comparing results among surveying platforms, which showed systematic offsets of 1.6 centimeters (cm) or less, and by error propagation, which yielded a mean vertical uncertainty of 6.7 cm. Based on the DEM and time-series measurements of water depth, the mean tidal prism of LHT was determined to be 2,826,000 cubic meters. The bathymetric data and DEM are available at http://dx.doi.org/10.5066/F7RX9954. 

GPS-seismograms reveal amplified shaking in California's San Joaquin Delta region

Science.gov (United States)

Johanson, I. A.

2014-12-01

The March 10, 2014, the Mw6.8 Ferndale earthquake occurred off the coast of Northern California, near the Mendocino Triple Junction. Aftershocks suggest a northeast striking fault plane for the strike-slip earthquake, oriented such that the California coast is roughly perpendicular to the rupture plane. Consequently, large amplitude Love waves were observed at seismic stations and continuous GPS stations throughout Northern California. While GPS is less sensitive then broadband instruments, in Northern California their station density is much higher, potentially providing valuable detail. A total of 269 GPS stations that have high-rate (1 sps) data available were used to generate GPS-seismograms. These include stations from the Bay Area Regional Deformation (BARD) network, the Plate Boundary Observatory (PBO, operated by UNAVCO), and the USGS, Menlo Park. The Track software package was used to generate relative displacements between pairs of stations, determined using Delaunay triangulation. This network-based approach allows for higher precision than absolute positioning, because common noise sources, in particular atmospheric noise, are cancelled out. A simple least-squares network adjustment with a stable centroid constraint is performed to transform the mesh of relative motions into absolute motions at individual GPS stations. This approach to generating GPS-seismograms is validated by the good agreement between time series records at 16 BARD stations that are co-located with broadband seismometers from the Berkeley Digital Seismic Network (BDSN). While the distribution of peak dynamic displacements is dominated in long periods by the radiation pattern, at shorter periods other patterns become visible. In particular, stations in the San Joaquin Delta (SJD) region show higher peak dynamic displacements than those in surrounding areas, as well as longer duration shaking. SJD stations also have higher dynamic displacements on the radial component than surrounding

Organic Carbon and Disinfection Byproduct Precursor Loads from a Constructed, Non-Tidal Wetland in California's Sacramento–San Joaquin Delta

Directory of Open Access Journals (Sweden)

Jacob A. Fleck

2007-05-01

Full Text Available Wetland restoration on peat islands in the Sacramento-San Joaquin Delta will change the quality of island drainage waters entering the Delta, a primary source of drinking water in California. Peat island drainage waters contain high concentrations of dissolved and particulate organic carbon (DOC and POC and organic precursors to drinking water disinfection byproducts, such as trihalomethanes (THMs. We quantified the net loads of DOC, POC, and THM-precursors from a constructed subsidence mitigation wetland on Twitchell Island in the Delta to determine the change in drainage water quality that may be caused by conversion of agricultural land on peat islands to permanently flooded, non-tidal wetlands. Creation of permanently flooded wetlands halts oxidative loss of the peat soils and thereby may mitigate the extensive land-surface subsidence of the islands that threatens levee stability in the Delta. Net loads from the wetland were dominated by DOC flushed from the oxidized shallow peat soil layer by seepage flow out of the wetland. The permanently flooded conditions in the overlying wetland resulted in a gradual evolution to anaerobic conditions in the shallow soil layer and a concomitant decrease in the flow could be minimized by reducing the hydraulic gradient between the wetland and the adjacent drainage ditch. Estimates of net loads from the wetland assuming efflux of surface water only were comparable in magnitude to net loads from nearby agricultural fields, but the wetland and agricultural net loads had opposite seasonal variations. Wetland surface water net loads of DOC, POC, and THM-precursors were lower during the winter months when the greatest amounts of water are available for diversion from the Delta to drinking water reservoirs.

Isotopic Evidence of Nitrate Sources and its Relationship to Algae in the San Joaquin River, California

Science.gov (United States)

Silva, S. R.; Kendall, C.; Young, M. B.; Stringfellow, W. T.; Borglin, S. E.; Kratzer, C. R.; Dahlgren, R. A.; Schmidt, C.; Rollog, M. E.

2007-12-01

Many competing demands have been placed on the San Joaquin River including deep water shipping, use as agricultural and drinking water, transport of agricultural and urban runoff, and recreation. These long-established demands limit the management options and increase the importance of understanding the river dynamics. The relationships among sources of water, nitrate, and algae in the San Joaquin River must be understood before management decisions can be made to optimize aquatic health. Isotopic analyses of water samples collected along the San Joaquin River in 2005-2007 have proven useful in assessing these relationships: sources of nitrate, the productivity of the San Joaquin River, and the relationship between nitrate and algae in the river. The San Joaquin River receives water locally from wetlands and agricultural return flow, and from three relatively large tributaries whose headwaters are in the Sierra Nevada. The lowest nitrate concentrations occur during periods of high flow when the proportion of water from the Sierra Nevada is relatively large, reflecting the effect of dilution from the big tributaries and indicating that a large fraction of the nitrate is of local origin. Nitrogen isotopes of nitrate in the San Joaquin River are relatively high (averaging about 12 per mil), suggesting a significant source from animal waste or sewage and/or the effects of denitrification. The d15N of nitrate varies inversely with concentration, indicating that these high isotopic values are also a local product. The d15N values of nitrate from most of the local tributaries is lower than that in the San Joaquin suggesting that nitrate from these tributaries does not account for a significant fraction of nitrate in the river. The source of the non-tributary nitrate must be either small unmeasured surface inputs or groundwater. To investigate whether groundwater might be a significant source of nitrate to the San Joaquin River, groundwater samples are being collected

78 FR 53113 - Approval and Promulgation of Implementation Plans; California; San Joaquin Valley; Contingency...

Science.gov (United States)

2013-08-28

...] Approval and Promulgation of Implementation Plans; California; San Joaquin Valley; Contingency Measures for... California to address Clean Air Act nonattainment area contingency measure requirements for the 1997 annual... Air Act Requirements for Contingency Measures III. Review of the Submitted San Joaquin Valley PM 2.5...

Using remote sensing to monitor past changes and assess future scenarios for the Sacramento-San Joaquin River Delta waterways, California USA

Science.gov (United States)

Santos, Maria J.; Hestir, Erin; Khanna, Shruti; Ustin, Susan L.

2017-04-01

Historically, deltas have been extensively affected both by natural processes and human intervention. Thus, understanding drivers, predicting impacts and optimizing solutions to delta problems requires a holistic approach spanning many sectors, disciplines and fields of expertise. Deltas are ideal model systems to understand the effects of the interaction between social and ecological domains, as they face unprecedented disturbances and threats to their biological and ecological sustainability. The challenge for deltas is to meet the goals of supporting biodiversity and ecosystem processes while also provisioning fresh water resources for human use. We provide an overview of the last 150 years of the Sacramento-San Joaquin River delta, where we illustrate the parallel process of an increase in disturbances, by particularly zooming in on the current cascading effects of invasive species on geophysical and biological processes. Using remote sensing data coupled with in situ measurements of water quality, turbidity, and species presence we show how the spread and persistence of aquatic invasive species affects sedimentation processes and ecosystem functioning. Our results show that the interactions between the biological and physical conditions in the Delta affect the trajectory of dominance by native and invasive aquatic plant species. Trends in growth and community characteristics associated with predicted impacts of climate change (sea level rise, warmer temperatures, changes in the hydrograph with high winter and low summer outflows) do not provide simple predictions. Individually, the impact of specific environmental changes on the biological components can be predicted, however it is the complex interactions of biological communities with the suite of physical changes that make predictions uncertain. Systematic monitoring is critical to provide the data needed to document and understand change of these delta systems, and to identify successful adaptation

San Joaquin Valley Aerosol Health Effects Research Center (SAHERC)

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Federal Laboratory Consortium — At the San Joaquin Valley Aerosol Health Effects Center, located at the University of California-Davis, researchers will investigate the properties of particles that...

Subsidence Reversal in a Re-established Wetland in the Sacramento-San Joaquin Delta, California, USA

Directory of Open Access Journals (Sweden)

Robin L. Miller

2008-10-01

Full Text Available The stability of levees in the Sacramento-San Joaquin Delta is threatened by continued subsidence of Delta peat islands. Up to 6 meters of land-surface elevation has been lost in the 150 years since Delta marshes were leveed and drained, primarily from oxidation of peat soils. Flooding subsided peat islands halts peat oxidation by creating anoxic soils, but net accumulation of new material in restored wetlands is required to recover land-surface elevations. We investigated the subsidence reversal potential of two 3 hectare, permanently flooded, impounded wetlands re-established on a deeply subsided field on Twitchell Island. The shallower wetland (design water depth 25 cm was almost completely colonized by dense emergent marsh vegetation within two years; whereas, the deeper wetland (design water depth 55 cm which developed spatially variable depths as a result of heterogeneous colonization by emergent vegetation, still had some areas remaining as open water after nine years. Changes in land-surface elevation were quantified using repeated sedimentation-erosion table measurements. New material accumulating in the wetlands was sampled by coring. Land-surface elevations increased by an average of 4 cm/yr in both wetlands from 1997 to 2006; however, the rates at different sites in the wetlands ranged from -0.5 to +9.2 cm/yr. Open water areas of the deeper wetland without emergent vegetation had the lowest rates of land-surface elevation gain. The greatest rates occurred in areas of the deeper wetland most isolated from the river water inlets, with dense stands of emergent marsh vegetation (tules and cattails. Vegetated areas of the deeper wetland in the transition zones between open water and mature emergent stands had intermediate rates of land-surface gain, as did the entire shallower wetland. These results suggest that the dominant component contributing to land-surface elevation gain in these wetlands was accumulation of organic matter, rather

Delta Vegetation and Land Use [ds292

Data.gov (United States)

California Natural Resource Agency — Vegetation and land use are mapped for the approximately 725,000 acres constituting the Legal Delta portion of the Sacramento and San Joaquin River Delta area....

76 FR 5276 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-01-31

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the... protection, Air pollution control, Incorporation by reference, Intergovernmental relations, Nitrogen dioxide...

76 FR 37044 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-06-24

... premature mortality, aggravation of respiratory and cardiovascular disease, decreased lung function... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of...

Examining Dimethyl Sulfide Emissions in California's San Joaquin Valley

Science.gov (United States)

Huber, D.; Hughes, S.; Blake, D. R.

2017-12-01

Dimethyl Sulfide (DMS) is a sulfur-containing compound that leads to the formation of aerosols which can lead to the formation of haze and fog. Whole air samples were collected on board the NASA C-23 Sherpa aircraft during the 2017 Student Airborne Research Program (SARP) over dairies and agricultural fields in the San Joaquin Valley. Analysis of the samples indicate average DMS concentrations of 23 ± 9 pptv, with a maximum concentration of 49 pptv. When compared with DMS concentrations from previous SARP missions (2009-2016), 2017 by far had the highest frequency of elevated DMS in this region. For this study, agricultural productivity of this region was analyzed to determine whether land use could be contributing to the elevated DMS. Top down and bottom up analysis of agriculture and dairies were used to determine emission rates of DMS in the San Joaquin Valley. Correlations to methane and ethanol were used to determine that DMS emissions were strongly linked to dairies, and resulted in R2 values of 0.61 and 0.43, respectively. These values indicate a strong correlation between dairies and DMS emissions. Combined with NOAA HySPLIT back trajectory data and analysis of ground air samples, results suggest that the contribution of dairies to annual DMS emissions in the San Joaquin Valley exceeds those from corn and alfalfa production.

76 FR 47076 - Revision to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-08-04

... California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District AGENCY... the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California...)(2)). List of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control...

76 FR 52623 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-08-23

... respiratory and cardiovascular disease, decreased lung function, visibility impairment, and damage to... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of...

75 FR 28509 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2010-05-21

..., aggravation of respiratory and cardiovascular disease, decreased lung function, visibility impairment, and... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of...

76 FR 56706 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-09-14

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of... of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control, Intergovernmental...

Designing a high-frequency nutrient and biogeochemical monitoring network for the Sacramento–San Joaquin Delta, northern California

Science.gov (United States)

Bergamaschi, Brian A.; Downing, Bryan D.; Kraus, Tamara E.C.; Pellerin, Brian A.

2017-07-11

Executive SummaryThis report is the third in a series of three reports that provide information about how high-frequency (HF) nutrient monitoring may be used to assess nutrient inputs and dynamics in the Sacramento–San Joaquin Delta, California (Delta). The purpose of this report is to provide the background, principles, and considerations for designing an HF nutrient-monitoring network for the Delta to address high-priority, nutrient-management questions. The report starts with discussion of the high-priority management questions to be addressed, continues through discussion of the questions and considerations that place demands and constraints on network design, discusses the principles applicable to network design, and concludes with the presentation of three example nutrient-monitoring network designs for the Delta. For three example network designs, we assess how they would address high-priority questions that have been identified by the Delta Regional Monitoring Program (Delta Regional Monitoring Program Technical Advisory Committee, 2015).This report, along with the other two reports of this series (Kraus and others, 2017; Downing and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series (Kraus and others, 2017) provides an introduction to the reasons for and fundamental concepts behind using HF monitoring measurements, including a brief summary of nutrient status and trends in the Delta and an extensive literature review showing how and where other research and monitoring programs have used HF monitoring to improve our understanding of nutrient cycling. The report covers the various technologies available for HF nutrient monitoring and presents the different ways HF monitoring instrumentation may be used for both fixed station and spatial

Erosion characteristics and horizontal variability for small erosion depths in the Sacramento-San Joaquin River Delta, California, USA

Science.gov (United States)

Schoellhamer, David H.; Manning, Andrew J.; Work, Paul A.

2017-01-01

Erodibility of cohesive sediment in the Sacramento-San Joaquin River Delta (Delta) was investigated with an erosion microcosm. Erosion depths in the Delta and in the microcosm were estimated to be about one floc diameter over a range of shear stresses and times comparable to half of a typical tidal cycle. Using the conventional assumption of horizontally homogeneous bed sediment, data from 27 of 34 microcosm experiments indicate that the erosion rate coefficient increased as eroded mass increased, contrary to theory. We believe that small erosion depths, erosion rate coefficient deviation from theory, and visual observation of horizontally varying biota and texture at the sediment surface indicate that erosion cannot solely be a function of depth but must also vary horizontally. We test this hypothesis by developing a simple numerical model that includes horizontal heterogeneity, use it to develop an artificial time series of suspended-sediment concentration (SSC) in an erosion microcosm, then analyze that time series assuming horizontal homogeneity. A shear vane was used to estimate that the horizontal standard deviation of critical shear stress was about 30% of the mean value at a site in the Delta. The numerical model of the erosion microcosm included a normal distribution of initial critical shear stress, a linear increase in critical shear stress with eroded mass, an exponential decrease of erosion rate coefficient with eroded mass, and a stepped increase in applied shear stress. The maximum SSC for each step increased gradually, thus confounding identification of a single well-defined critical shear stress as encountered with the empirical data. Analysis of the artificial SSC time series with the assumption of a homogeneous bed reproduced the original profile of critical shear stress, but the erosion rate coefficient increased with eroded mass, similar to the empirical data. Thus, the numerical experiment confirms the small-depth erosion hypothesis. A linear

75 FR 1715 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2010-01-13

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVAPCD) portion of the...)(2)). List of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control...

76 FR 69135 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-11-08

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the... of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control, Incorporation by...

Identifying sources of dissolved organic carbon in agriculturally dominated rivers using radiocarbon age dating: Sacramento-San Joaquin River Basin, California

Science.gov (United States)

Sickman, James O.; DiGiorgio, Carol L.; Davisson, M. Lee; Lucero, Delores M.; Bergamaschi, Brian A.

2010-01-01

We used radiocarbon measurements of dissolved organic carbon (DOC) to resolve sources of riverine carbon within agriculturally dominated landscapes in California. During 2003 and 2004, average Δ14C for DOC was −254‰ in agricultural drains in the Sacramento–San Joaquin Delta, −218‰ in the San Joaquin River, −175‰ in the California State Water Project and −152‰ in the Sacramento River. The age of bulk DOC transiting the rivers of California’s Central Valley is the oldest reported for large rivers and suggests wide-spread loss of soil organic matter caused by agriculture and urbanization. Using DAX 8 adsorbent, we isolated and measured 14C concentrations in hydrophobic acid fractions (HPOA); river samples showed evidence of bomb-pulse carbon with average Δ14C of 91 and 76‰ for the San Joaquin and Sacramento Rivers, respectively, with older HPOA, −204‰, observed in agricultural drains. An operationally defined non-HPOA fraction of DOC was observed in the San Joaquin River with seasonally computed Δ14C values of between −275 and −687‰; the source of this aged material was hypothesized to be physically protected organic-matter in high clay-content soils and agrochemicals (i.e., radiocarbon-dead material) applied to farmlands. Mixing models suggest that the Sacramento River contributes about 50% of the DOC load in the California State Water Project, and agricultural drains contribute approximately one-third of the load. In contrast to studies showing stabilization of soil carbon pools within one or two decades following land conversion, sustained loss of soil organic matter, occurring many decades after the initial agricultural-land conversion, was observed in California’s Central Valley.

The effect of submerged aquatic vegetation expansion on a declining turbidity trend in the Sacramento-San Joaquin River Delta

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Hestir, E.L.; Schoellhamer, David H.; Jonathan Greenberg,; Morgan-King, Tara L.; Ustin, S.L.

2016-01-01

Submerged aquatic vegetation (SAV) has well-documented effects on water clarity. SAV beds can slow water movement and reduce bed shear stress, promoting sedimentation and reducing suspension. However, estuaries have multiple controls on turbidity that make it difficult to determine the effect of SAV on water clarity. In this study, we investigated the effect of primarily invasive SAV expansion on a concomitant decline in turbidity in the Sacramento-San Joaquin River Delta. The objective of this study was to separate the effects of decreasing sediment supply from the watershed from increasing SAV cover to determine the effect of SAV on the declining turbidity trend. SAV cover was determined by airborne hyperspectral remote sensing and turbidity data from long-term monitoring records. The turbidity trends were corrected for the declining sediment supply using suspended-sediment concentration data from a station immediately upstream of the Delta. We found a significant negative trend in turbidity from 1975 to 2008, and when we removed the sediment supply signal from the trend it was still significant and negative, indicating that a factor other than sediment supply was responsible for part of the turbidity decline. Turbidity monitoring stations with high rates of SAV expansion had steeper and more significant turbidity trends than those with low SAV cover. Our findings suggest that SAV is an important (but not sole) factor in the turbidity decline, and we estimate that 21–70 % of the total declining turbidity trend is due to SAV expansion.

77 FR 214 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-01-04

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approval of revisions to the San Joaquin Valley Air Pollution Control District (SJVUAPCD) portion of the... used by the California Air Resources Board and air districts for evaluating air pollution control...

76 FR 56134 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-09-12

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of... preempt Tribal law. List of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control...

75 FR 60623 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2010-10-01

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approval and limited disapproval of revisions to the San Joaquin Valley Unified Air Pollution Control... 30, 2008) \\2\\; and Ventura County Air Pollution Control District (VCAPCD) Rule 74.15 (as amended...

75 FR 57862 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2010-09-23

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the... section 307(b)(2)). List of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control...

Riders on the storm: selective tidal movements facilitate the spawning migration of threatened delta smelt in the San Francisco Estuary

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Bennett, W.A.; Burau, Jon R.

2015-01-01

Migration strategies in estuarine fishes typically include behavioral adaptations for reducing energetic costs and mortality during travel to optimize reproductive success. The influence of tidal currents and water turbidity on individual movement behavior were investigated during the spawning migration of the threatened delta smelt, Hypomesus transpacificus, in the northern San Francisco Estuary, California, USA. Water current velocities and turbidity levels were measured concurrently with delta smelt occurrence at sites in the lower Sacramento River and San Joaquin River as turbidity increased due to first-flush winter rainstorms in January and December 2010. The presence/absence of fish at the shoal-channel interface and near the shoreline was quantified hourly over complete tidal cycles. Delta smelt were caught consistently at the shoal-channel interface during flood tides and near the shoreline during ebb tides in the turbid Sacramento River, but were rare in the clearer San Joaquin River. The apparent selective tidal movements by delta smelt would facilitate either maintaining position or moving upriver on flood tides, and minimizing advection down-estuary on ebb tides. These movements also may reflect responses to lateral gradients in water turbidity created by temporal lags in tidal velocities between the near-shore and mid-channel habitats. This migration strategy can minimize the energy spent swimming against strong river and tidal currents, as well as predation risks by remaining in turbid water. Selection pressure on individuals to remain in turbid water may underlie population-level observations suggesting that turbidity is a key habitat feature and cue initiating the delta smelt spawning migration.

76 FR 56132 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-09-12

... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of... did the State submit? B. Are there other versions of this rule? C. What is the purpose of the...

Design and implementation of an emergency environmental responsesystem to protect migrating salmon in the lower San Joaquin River,California

Energy Technology Data Exchange (ETDEWEB)

Quinn, Nigel W.T.; Jacobs, Karl C.

2006-01-30

In the past decade tens of millions of dollars have beenspent by water resource agencies in California to restore the nativesalmon fishery in the San Joaquin River and its major tributaries. Anexcavated deep water ship channel (DWSC), through which the river runs onits way to the Bay/Delta and Pacific Ocean, experiences episodes of lowdissolved oxygen which acts as a barrier to anadromous fish migration anda threat to the long-term survival of the salmon run. An emergencyresponse management system is under development to forecast theseepisodes of low dissolved oxygen and to deploy measures that will raisedissolved oxygen concentrations to prevent damage to the fisheryresource. The emergency response management system has been designed tointeract with a real-time water quality monitoring network and is servedby a comprehensive data management and forecasting model toolbox. TheBay/Delta and Tributaries (BDAT) Cooperative Data Management System is adistributed, web accessible database that contains terabytes ofinformation on all aspects of the ecology of the Bay/Delta and upperwatersheds. The complexity of the problem dictates data integration froma variety of monitoring programs. A unique data templating system hasbeen constructed to serve the needs of cooperating scientists who wish toshare their data and to simplify and streamline data uploading into themaster database. In this paper we demonstrate the utility of such asystem in providing decision support for management of the San JoaquinRiver fishery. We discuss how the system might be expanded to havefurther utility in coping with other emergencies and threats to watersupply system serving California's costal communities.

Chemical analyses for selected wells in San Joaquin County and part of Contra Costa County, California

Science.gov (United States)

Keeter, Gail L.

1980-01-01

The study area of this report includes the eastern valley area of Contra Costa County and all of San Joaquin County, an area of approximately 1,600 square miles in the northern part of the San Joaquin Valley, Calif. Between December 1977 and December 1978, 1,489 wells were selectively canvassed. During May and June in 1978 and 1979, water samples were collected for chemical analysis from 321 of these wells. Field determinations of alkalinity, conductance, pH, and temperature were made, and individual constituents were analyzed. This report is the fourth in a series of baseline data reports on wells in the Sacramento and San Joaquin Valleys. (USGS)

Climate change and other stressors change modeled population size and hybridization potential for San Joaquin kit fox

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The San Joaquin kit fox was once widely distributed across the southern San Joaquin Valley, but agriculture and development have replaced much of the endangered subspecies’ habitat. We modeled impacts of climate change, land-use change, and rodenticide exposure on kit fox p...

76 FR 56116 - Interim Final Determination To Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-09-12

... Determination To Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution Control District AGENCY... on a proposed approval of revisions to the San Joaquin Valley Unified Air Pollution Control District... Part 52 Environmental protection, Air pollution control, Incorporation by reference, Intergovernmental...

76 FR 56114 - Interim Final Determination to Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-09-12

... Determination to Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution Control District AGENCY... on a proposed approval of revisions to the San Joaquin Valley Unified Air Pollution Control District... Part 52 Environmental protection, Air pollution control, Incorporation by reference, Intergovernmental...

Civilizing the Conversation? Using Surveys to Inform Water Management and Science in the Sacramento-San Joaquin Delta

Science.gov (United States)

Hanak, E.; Phillips Chappelle, C.

2013-12-01

Improving ecosystem outcomes in California's Sacramento-San Joaquin Delta is a complex, high-stakes water resource management challenge. The Delta is a major hub for water supply conveyance and a valued ecological resource. Yet long-term declines in native fish populations have resulted in severe legal constraints on water exports and fueled growing public debates about the roles and responsibilities of flow modification and other sources of ecosystem stress. Meanwhile, scientific uncertainty, and the inability of the scientific community to effectively communicate what *is* known, has frustrated policymakers and encouraged 'combat science' - the commissioning and use of competing scientific opinions in the courtroom. This paper summarizes results from a study designed to inform the policy process through the use of confidential surveys of scientific researchers (those publishing in peer-reviewed journals, n=122) and engaged stakeholders and policymakers (n=240). The surveys, conducted in mid-2012, sought respondents' views on the sources of ecosystem stress and priority ecosystem management actions. The scientist survey is an example of the growing use of expert elicitation to address gaps in the scientific literature, particularly where there is uncertainty about priorities for decisionmaking (e.g., Cvitanovic et al. 2013, J. of Env. Mgmt; McDaniels et al. 2012, Risk Analysis). The stakeholder survey is a useful complement, enabling the identification of areas of consensus and divergence among stakeholder groups and between these groups and scientific experts. The results suggest such surveys are a promising tool for addressing complex water management problems. We found surprisingly high agreement among scientists on the relative roles of stressors and the most promising management actions; they emphasized restoring more natural processes through habitat and flow actions within the watershed, consistent with 'reconciliation ecology' approaches (Rosenzweig 2003

76 FR 59254 - Interim Final Determination To Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-09-26

... Determination To Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution Control District AGENCY... on a proposed approval of revisions to the San Joaquin Valley Unified Air Pollution Control District...)(2)). List of Subjects in 40 CFR Part 52 Environmental protection, Air pollution control...

Mercury in the mix: An in situ mesocosm approach to assess relative contributions of mercury sources to methylmercury production and bioaccumulation in the Sacramento-San Joaquin Delta

Science.gov (United States)

Fleck, J.; Krabbenhoft, D. P.; Kraus, T. E. C.; Ackerman, J.; Stumpner, E. B.; DeWild, J.; Marvin-DiPasquale, M. C.; Tate, M.; Ogorek, J.

2014-12-01

Mercury (Hg) contamination is considered one of the greatest threats to the Sacramento-San Joaquin Delta and the San Francisco Estuary ecosystems. This threat is driven by the transformation of Hg, deposited in the Delta from erosion of upstream historic mining debris and atmospheric deposition, by native bacteria into the more toxic and biologically available form, methylmercury (MeHg), in the wetlands and sediment of the Delta. To effectively manage this threat, a quantitative understanding of the relative contribution of the different Hg sources to MeHg formation is needed. Mass balance estimates indicate as much as 99% of the Hg entering the Delta arrives via tributary inputs. Of the tributary Hg load, approximately 90% is adsorbed to suspended particles from tributary discharge and 10% is in the dissolved fraction, potentially of atmospheric origin. In comparison, the remaining 1-2% of the Hg entering the Delta arrives through direct atmospheric deposition (wet and dry). The relative importance of these sources to MeHg production within the Delta is not linearly related to the mass inputs because atmospherically-derived Hg is believed to be more reactive than sediment-bound Hg with respect to MeHg formation. We conducted an in situ mesocosm dosing experiment where different Hg sources to the Delta (direct atmospheric, dissolved riverine and suspended sediment) were "labeled" with different stable Hg isotopes and added to mesocosms within four different wetlands. Mercury isotopes added with the streambed sediments were equilibrated in sealed containers for six months; while the Hg isotopes associated with the precipitation and river water were equilibrated for 24 hours prior to use. After adding the isotopes, we sampled the water column, overlying air, bottom sediments and fish (Gambusia) at time intervals up to 30 days. Preliminary results from this experiment suggest that aqueous Hg sources (Hg introduced with precipitation and filtered river water) are 10

A millennial-scale record of Pb and Hg contamination in peatlands of the Sacramento-San Joaquin Delta of California, USA

Science.gov (United States)

Drexler, Judith; Alpers, Charles N.; Neymark, Leonid; Paces, James B.; Taylor, Howard E.; Fuller, Christopher C.

2016-01-01

In this paper, we provide the first record of millennial patterns of Pb and Hg concentrations on the west coast of the United States. Peat cores were collected from two micro-tidal marshes in the Sacramento-San Joaquin Delta of California. Core samples were analyzed for Pb, Hg, and Ti concentrations and dated using radiocarbon, 210Pb, and 137Cs. Pre-anthropogenic concentrations of Pb and Hg in peat ranged from 0.60 to 13.0 µg g-1and from 6.9 to 71 ng g-1, respectively. For much of the past 6000+ years, the Delta was free from anthropogenic pollution, however, beginning in ~1425 CE, Hg and Pb concentrations, Pb/Ti ratios, Pb enrichment factors (EFs), and HgEFs all increased. Pb isotope compositions of the peat suggest that this uptick was likely caused by smelting activities originating in Asia. The next increases in Pb and Hg contamination occurred during the California Gold Rush (beginning ~1850 CE), when concentrations reached their highest levels (74 µg g-1 Pb, 990 ng g-1 Hg; PbEF = 12 and HgEF = 28). Lead concentrations increased again beginning in the ~1920s with the incorporation of Pb additives in gasoline. The phase-out of lead additives in the late 1980s was reflected in Pb isotope ratios and reductions in Pb concentrations in the surface layers of the peat. The rise and fall of Hg contamination was also tracked by the peat archive, with the highest Hg concentrations occurring just before 1963 CE and then decreasing during the post-1963 period. Overall, the results show that the Delta was a pristine region for most of its ~6700-year existence; however, since ~1425 CE, it has received Pb and Hg contamination from both global and regional sources.

A millennial-scale record of Pb and Hg contamination in peatlands of the Sacramento-San Joaquin Delta of California, USA.

Science.gov (United States)

Drexler, Judith Z; Alpers, Charles N; Neymark, Leonid A; Paces, James B; Taylor, Howard E; Fuller, Christopher C

2016-05-01

In this paper, we provide the first record of millennial patterns of Pb and Hg concentrations on the west coast of the United States. Peat cores were collected from two micro-tidal marshes in the Sacramento-San Joaquin Delta of California. Core samples were analyzed for Pb, Hg, and Ti concentrations and dated using radiocarbon and (210)Pb. Pre-anthropogenic concentrations of Pb and Hg in peat ranged from 0.60 to 13.0μgg(-1)and from 6.9 to 71ngg(-1), respectively. For much of the past 6000+ years, the Delta was free from anthropogenic pollution, however, beginning in ~1425CE, Hg and Pb concentrations, Pb/Ti ratios, Pb enrichment factors (EFs), and HgEFs all increased. Pb isotope compositions of the peat suggest that this uptick was likely caused by smelting activities originating in Asia. The next increases in Pb and Hg contamination occurred during the California Gold Rush (beginning ~1850CE), when concentrations reached their highest levels (74μgg(-1) Pb, 990ngg(-1) Hg; PbEF=12 and HgEF=28). Lead concentrations increased again beginning in the ~1920s with the incorporation of Pb additives in gasoline. The phase-out of lead additives in the late 1980s was reflected in changes in Pb isotope ratios and reductions in Pb concentrations in the surface layers of the peat. The rise and subsequent fall of Hg contamination was also tracked by the peat archive, with the highest Hg concentrations occurring just before 1963CE and then decreasing during the post-1963 period. Overall, the results show that the Delta was a pristine region for most of its ~6700-year existence; however, since ~1425CE, it has received Pb and Hg contamination from both global and regional sources. Published by Elsevier B.V.

Estimating juvenile Chinook salmon (Oncorhynchus tshawytscha) abundance from beach seine data collected in the Sacramento–San Joaquin Delta and San Francisco Bay, California

Science.gov (United States)

Perry, Russell W.; Kirsch, Joseph E.; Hendrix, A. Noble

2016-06-17

Resource managers rely on abundance or density metrics derived from beach seine surveys to make vital decisions that affect fish population dynamics and assemblage structure. However, abundance and density metrics may be biased by imperfect capture and lack of geographic closure during sampling. Currently, there is considerable uncertainty about the capture efficiency of juvenile Chinook salmon (Oncorhynchus tshawytscha) by beach seines. Heterogeneity in capture can occur through unrealistic assumptions of closure and from variation in the probability of capture caused by environmental conditions. We evaluated the assumptions of closure and the influence of environmental conditions on capture efficiency and abundance estimates of Chinook salmon from beach seining within the Sacramento–San Joaquin Delta and the San Francisco Bay. Beach seine capture efficiency was measured using a stratified random sampling design combined with open and closed replicate depletion sampling. A total of 56 samples were collected during the spring of 2014. To assess variability in capture probability and the absolute abundance of juvenile Chinook salmon, beach seine capture efficiency data were fitted to the paired depletion design using modified N-mixture models. These models allowed us to explicitly test the closure assumption and estimate environmental effects on the probability of capture. We determined that our updated method allowing for lack of closure between depletion samples drastically outperformed traditional data analysis that assumes closure among replicate samples. The best-fit model (lowest-valued Akaike Information Criterion model) included the probability of fish being available for capture (relaxed closure assumption), capture probability modeled as a function of water velocity and percent coverage of fine sediment, and abundance modeled as a function of sample area, temperature, and water velocity. Given that beach seining is a ubiquitous sampling technique for

Resource intensification and osteoarthritis patterns: changes in activity in the prehistoric Sacramento-San Joaquin Delta region.

Science.gov (United States)

Cheverko, Colleen M; Bartelink, Eric J

2017-10-01

Ethnohistoric accounts and archaeological research from Central California document a shift from the use of lower-cost, high-ranked resources (e.g., large game) toward the greater use of higher-cost, low-ranked resources (e.g., acorns and small seeds) during the Late Holocene (4500-200 BP). The subsistence transition from higher consumption of large game toward an increased reliance on acorns was likely associated with increases in levels of logistical mobility and physical activity. This study predicts that mobility and overall workload patterns changed during this transition to accommodate new food procurement strategies and incorporate new dietary resources during the Late Holocene in Central California. Osteoarthritis prevalence was scored in the shoulder, elbow, hip, and knee of adult individuals (n = 256) from seven archaeological sites in the Sacramento-San Joaquin Delta region. Comparisons were made between osteoarthritis prevalence, sex, age-at-death, and time period using ANCOVAs. The results of this study indicate significant increases in osteoarthritis prevalence in the hip of adult males and females during the Late Period (1200-200 BP), even after correcting for the cumulative effects of age. No differences were observed between the sexes or between time periods for the shoulder, elbow, and knee joints. The temporal increase in hip osteoarthritis supports the hypothesis that there was an increasing need for greater logistical mobility over time to procure key resources away from the village sites. Additionally, the lack of sex differences in osteoarthritis prevalence may suggest that females and males likely performed similar levels of activity during these periods. © 2017 Wiley Periodicals, Inc.

Effect of Climate Extremes, Seasonal Change, and Agronomic Practices on Measured Evapotranspiration and CO2 Exchange in Sacramento-San Joaquin River Delta Alfalfa Fields

Science.gov (United States)

Clay, J.; Kent, E. R.; Leinfelder-Miles, M.; Paw U, K. T.; Little, C.; Lambert, J. J.

2017-12-01

Evapotranspiration and CO2 exchange was measured in five alfalfa fields in the Sacramento-San Joaquin River Delta region from 2016 to 2017 using eddy covariance and surface renewal methods. Seasonal changes of evapotranspiration and CO2 fluxes were compared between 2016, a drought year, and 2017, a high rainfall year. Additionally, changes in evapotranspiration and CO2 flux were investigated across various agronomic considerations, such as irrigation methods (border-check flood and sub-surface), stand life, and herbicide programs. Components of the energy balance, including net radiation, latent heat, ground heat flux, and sensible heat, were evaluated considering correlations to wind speed measured by three sonic anemometers, irrigation frequency, and crop cutting cycle. Comparisons between two different types of radiometers were also carried out. Under drought conditions, we observed higher amounts of evapotranspiration in a field having a stand life of less than two years of age compared to older stands, and in a sub-surface irrigated field compared to flood irrigated fields.

Multi-year coupled biogeochemical and biophysical impacts of restoring drained agricultural peatlands to wetlands across the Sacramento-San Joaquin Delta, California, USA.

Science.gov (United States)

Hemes, K. S.; Eichelmann, E.; Chamberlain, S.; Knox, S. H.; Oikawa, P.; Sturtevant, C.; Verfaillie, J. G.; Baldocchi, D. D.

2017-12-01

Globally, delta ecosystems are critical for human livelihoods, but are at increasingly greater risk of degradation. The Sacramento-San Joaquin River Delta (`Delta') has been subsiding dramatically, losing close to 100 Tg of carbon since the mid 19th century due in large part to agriculture-induced oxidation of the peat soils through drainage and cultivation. Efforts to re-wet the peat soils through wetland restoration are attractive as climate mitigation activities. While flooded wetland systems have the potential to sequester significant amounts of carbon as photosynthesis outpaces aerobic respiration, the highly-reduced conditions can result in significant methane emissions. This study will utilize three years (2014-2016) of continuous, gap-filled, CO2 and CH4 flux data from a mesonetwork of seven eddy covariance towers in the Delta to compute GHG budgets for the restored wetlands and agricultural baseline sites measured. Along with biogeochemical impacts of wetland restoration, biophysical impacts such as changes in reflectance, energy partitioning, and surface roughness, can have significant local to regional impacts on air temperature and heat fluxes. We hypothesize that despite flooded wetlands reducing albedo, wetland land cover will cool the near-surface air temperature due to increased net radiation being preferentially partitioned into latent heat flux and rougher canopy conditions allowing for more turbulent mixing with the atmosphere. This study will investigate the seasonal and diurnal patterns of turbulent energy fluxes and the surface properties that drive them. With nascent policy mechanisms set to compensate landowners and farmers for low emission land use practices beyond reforestation, it is essential that policy mechanisms take into consideration how the biophysical impacts of land use change could drive local to regional-scale climatic perturbations, enhancing or attenuating the biogeochemical impacts.

Processes Affecting Agricultural Drainwater Quality and Organic Carbon Loads in California's Sacramento–San Joaquin Delta

Directory of Open Access Journals (Sweden)

Steven J. Deverel

2007-05-01

Full Text Available From 2000 to 2003 we quantified drain flow, drain-and ground-water chemistry and hydrogeologic conditions on Twitchell Island in the Sacramento-San Joaquin Delta. The primary objective was to quantify processes affecting organic carbon concentrations and loads in agricultural drainage water. We collected physical and chemical data in southern and northern areas: TN and TS, respectively. Corn grew in both areas during the spring and summer. The peat soils in the TN area are more decomposed than those in the TS area. Results elucidate processes affecting drain flow and concentrations under varying hydrologic conditions. During May through November, groundwater flows from the permanently saturated zone to drainage ditches, and the resulting average drainage-water quality and dissolved organic carbon (DOC concentration was similar to the groundwater; the median DOC loads in the TN and TS study areas ranged from 9 to 27 g C/ha-day. The major ion chemistry and stable isotope data confirmed that groundwater was the primary source of drainflow. In contrast, during December through April the drainwater is supplied from the shallow, variably saturated soil-zone. The DOC concentrations, major-ion chemistry, and stable isotope data indicate that the shallow-zone water is partially evaporated and oxidized. Higher flows and DOC concentrations during these months result in higher median DOC loads, which ranged from 84 to 280 g C/ha-day. During December through April, increasing groundwater levels in the shallow peat layers and mobilization of organic carbon result in high drain flow and increased trihalomethane precursor concentrations and loads. On a per mass DOC basis, drain water collected during high flow periods is less likely to form THMs than during low flow periods. However, the high flows and subsequent high concentrations contribute to substantially higher trihalomethane precursor and DOC loads.

Implications for sustainability of a changing agricultural mosaic in the Sacramento-San Joaquin Delta, California, USA

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Lucero, C. E.; Deverel, S. J.; Jacobs, P.; Kelsey, R.

2015-12-01

Transformed from the largest wetland system on the west coast of the United States to agriculture, the Sacramento-San Joaquin Delta is an extreme teaching example of anthropogenic threats to sustainability. For over 6,000 years, over 280,000 ha of intertidal freshwater marsh accreted due to seal level rise and sediment deposition. Farming of organic soils since 1850 resulted in land subsidence caused primarily by oxidation. Over 2 billion cubic meters of soil were lost resulting in elevations on Delta islands ranging from -1 to -8 m and increased risk of levee failures and water supply disruption. Alteration of water flows and habitat caused dramatic declines in aquatic species. A cycle in which oxidation of organic soils leads to deepening of drainage ditches to maintain an aerated root zone which in turn results in sustained oxidation and subsidence is perpetuated by the momentum of the status quo despite evidence that agricultural practices are increasingly unsustainable. Flooding of the soils breaks the oxidation/subsidence cycle. We assessed alternate land uses and the carbon market as a potential impetus for change. Using the peer-reviewed and locally calibrated SUBCALC model, we estimated net global warming potential for a range of scenarios for a representative island, from status quo to incorporating significant proportions of subsidence-mitigating land use. We analyzed economic implications by determining profit losses or gains when a simulated GHG offset market is available for wetlands using a regional agricultural production and economic optimization model, We estimated baseline GHG emissions at about 60,000 tons CO2-e per year. In contrast, modeled implementation of rice and wetlands resulted in substantial emissions reductions to the island being a net GHG sink. Subsidence would be arrested or reversed where these land uses are implemented. Results of economic modeling reveal that conversion to wetlands can have significant negative farm financial

Synthesis of data from high-frequency nutrient and associated biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

Science.gov (United States)

Downing, Bryan D.; Bergamaschi, Brian A.; Kraus, Tamara E.C.

2017-07-11

Executive SummaryThis report is the second in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). The purpose of this report is to synthesize the data available from a nutrient and water-quality HF (about every 15 minutes) monitoring network operated by the U.S. Geological Survey in the northern Delta. In this report, we describe the network and focus on the purpose of each station. We then present and discuss the available data, at various timescales—first at the monthly, seasonal, and inter-annual timescales, and second, for comparison, at the tidal and event timescales. As expected, we determined that there is substantial variability in nitrate-N concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. Resolving this variability is made possible by the HF data, with the largest variability caused by storms, tides, and diel biological processes. Given this large temporal variability, calculations of cumulative nutrient fluxes (for example, daily, monthly, or annual loads) is difficult without HF data. For example, in the Cache Slough, calculation of the annual load without the tidal variability resulted in a 30 percent underestimation of the true annual load value. We conclude that HF measurements are important for accurate determination of fluxes and loads in tidal environments, but, more importantly, provide important insights into processes and rates of nutrient cycling.This report, along with the other two reports of this series (Bergamaschi and others, 2017; Kraus, Bergamaschi, and others, 2017), was drafted in cooperation with the Delta Regional Monitoring Program to help scientists, managers, and planners understand how HF data improve our understanding of nutrient sources and sinks, drivers, and effects in the Delta. The first report in the series

Selenium and other elements in freshwater fishes from the irrigated San Joaquin Valley, California

Science.gov (United States)

Saiki, M.K.; Jennings, M.R.; May, T.W.

1992-01-01

Arsenic (As), chromium (Cr), mercury (Hg), and selenium (Se) were measured in composite whole-body samples of five fishes — bluegill (Lepomis macrochirus), common carp (Cyprinus carpio), mosquitofish (Gambusia affinis), largemouth bass (Micropterus salmoides), and Sacramento blackfish (Orthodon microlepidotus) — from the San Joaquin River system to determine if concentrations were elevated from exposure to agricultural subsurface (tile) drainage. Except for Cr, the concentrations of these elements in fishes from one or more sites were elevated; however, only Se approached concentrations that may adversely affect survival, growth, or reproduction in warm water fishes. Moreover, only Se among the four measured elements exhibited a geographic (spatial) pattern that coincided with known inflows of tile drainage to the San Joaquin River and its tributaries. Historical data from the Grassland Water District (Grasslands; a region exposed to concentrated tile drainage) suggested that concentrations of Se in fishes were at maximum during or shortly after 1984 and have been slightly lower since then. The recent decline of Se concentrations in fishes from the Grasslands could be temporary if additional acreages of irrigated lands in this portion of the San Joaquin Valley must be tile-drained to protect agricultural crops from rising groundwater tables.

Assessment of interim flow water-quality data of the San Joaquin River restoration program and implications for fishes, California, 2009-11

Science.gov (United States)

Wulff, Marissa L.; Brown, Larry R.

2015-01-01

After more than 50 years of extensive water diversion for urban and agriculture use, a major settlement was reached among the U.S. Departments of the Interior and Commerce, the Natural Resources Defense Council, and the Friant Water Users Authority in an effort to restore the San Joaquin River. The settlement received Federal court approval in October 2006 and established the San Joaquin River Restoration Program, a multi-agency collaboration between State and Federal agencies to restore and maintain fish populations, including Chinook salmon, in the main stem of the river between Friant Dam and the confluence with the Merced River. This is to be done while avoiding or minimizing adverse water supply effects to all of the Friant Division contractors that could result from restoration flows required by the settlement. The settlement stipulates that water- and sediment-quality data be collected to help assess the restoration goals. This report summarizes and evaluates water-quality data collected in the main stem of the San Joaquin River between Friant Dam and the Merced River by the U.S. Bureau of Reclamation for the San Joaquin River Restoration Program during 2009-11. This summary and assessment consider sampling frequency for adequate characterization of variability, sampling locations for sufficient characterization of the San Joaquin River Restoration Program restoration reach, sampling methods for appropriate media (water and sediment), and constituent reporting limits. After reviewing the water- and sediment-quality results for the San Joaquin River Restoration Program, several suggestions were made to the Fisheries Management Work Group, a division of the San Joaquin River Restoration Program that focuses solely on the reintroduction strategies and health of salmon and other native fishes in the river. Water-quality results for lead and total organic carbon exceeded the Surface Water Ambient Monitoring Program Basin Plan Objectives for the San Joaquin Basin

Winters-Domengine Total Petroleum System—Northern Nonassociated Gas Assessment Unit of the San Joaquin Basin Province: Chapter 21 in Petroleum systems and geologic assessment of oil and gas in the San Joaquin Basin Province, California

Science.gov (United States)

Hosford Scheirer, Allegra; Magoon, Leslie B.

2008-01-01

The Northern Nonassociated Gas Assessment Unit (AU) of the Winters-Domengine Total Petroleum System of the San Joaquin Basin Province consists of all nonassociated gas accumulations in Cretaceous, Eocene, and Miocene sandstones located north of township 15 South in the San Joaquin Valley. The northern San Joaquin Valley forms a northwest-southeast trending asymmetrical trough. It is filled with an alternating sequence of Cretaceous-aged sands and shales deposited on Franciscan Complex, ophiolitic, and Sierran basement. Eocene-aged strata unconformably overlie the thick Cretaceous section, and in turn are overlain unconformably by nonmarine Pliocene-Miocene sediments. Nonassociated gas accumulations have been discovered in the sands of the Panoche, Moreno, Kreyenhagen, andDomengine Formations and in the nonmarine Zilch formation of Loken (1959) (hereafter referred to as Zilch formation). Most hydrocarbon accumulations occur in low-relief, northwest-southeast trending anticlines formed chiefly by differential compaction of sediment and by northeast southwest directed compression during the Paleogene (Bartow, 1991) and in stratigraphic traps formed by pinch out of submarine fan sands against slope shales. To date, 176 billion cubic feet (BCF) of nonassociated recoverable gas has been found in fields within the assessment unit (table 21.1). A small amount of biogenic gas forms near the surface of the AU. Map boundaries of the assessment unit are shown in figures 21.1 and 21.2; in plan view, this assessment unit is identical to the Northern Area Nonassociated Gas play 1007 considered by the U.S. Geological Survey (USGS) in its 1995 National Assessment (Beyer, 1996). The AU is bounded on the east by the mapped limits of Cretaceous sandstone reservoir rocks and on the west by the east flank of the Diablo Range. The southern limit of the AU is the southernmost occurrence of nonassociated thermogenic-gas accumulations. The northern limit of the AU corresponds to the

Concept Paper for Real-Time Temperature and Water QualityManagement for San Joaquin River Riparian Habitat Restoration

Energy Technology Data Exchange (ETDEWEB)

Quinn, Nigel W.T.

2004-12-20

The San Joaquin River Riparian Habitat Restoration Program (SJRRP) has recognized the potential importance of real-time monitoring and management to the success of the San Joaquin River (SJR) restoration endeavor. The first step to realizing making real-time management a reality on the middle San Joaquin River between Friant Dam and the Merced River will be the installation and operation of a network of permanent telemetered gauging stations that will allow optimization of reservoir releases made specifically for fish water temperature management. Given the limited reservoir storage volume available to the SJJRP, this functionality will allow the development of an adaptive management program, similar in concept to the VAMP though with different objectives. The virtue of this approach is that as management of the middle SJR becomes more routine, additional sensors can be added to the sensor network, initially deployed, to continue to improve conditions for anadromous fish.

Proposed Strategy for San Joaquin River Basin Water Quality Monitoring and Assessment

Science.gov (United States)

A Proposed Strategy for San Joaquin River Basin Water Quality Monitoring and Assessment was published in 2010, and a Strawman Proposal was developed in 2012 by the Coalition for Urban/Rural Environmental Stewardship, California Water Resources Board, EPA.

Mapping Evapotranspiration in the Sacramento San Joaquin Delta using simulated ECOSTRESS Thermal Data: Validation and Inter-comparison

Science.gov (United States)

Wong, A.; Jin, Y.; He, R.; Hulley, G.; Fisher, J.; Lee, C. M.; Rivera, G.; Hook, S. J.; Medellin-Azuara, J.; Kent, E. R.; Paw U, K. T.; Gao, F.; Lund, J. R.

2017-12-01

Irrigation accounts for 80% of human freshwater consumption, and most of it return to the atmosphere through evapotranspiration (ET). In California, where our water resources are limited and heavily utilized, the need for a cost-effective, timely, and consistent spatial estimate of crop ET, from the farm to watershed level, is becoming increasingly important. The ECOsystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS), to be launched in mid-2018, will provide the most detailed and accurate temperature measurements ever acquired from space and thus unique opportunities for estimating ET at the farm scale. We simulated the ECOSTRESS thermal data at a 70 m resolution using VIIRS thermal observations and ASTER emissivity data in the Sacramento-San Joaquin Delta region for the 2016 water year. Three remote sensing based ET methods were then applied to estimate ET using simulated ECOSTRESS data and optical data from Landsat and VIIRS, including Priestley-Taylor approaches developed by the Jet Propulsion Laboratory (PT-JPL) and by UC Davis (PT-UCD), and the Mapping Evapotranspiration at high Resolution with Internalized Calibration (METRIC) model. We compared these three sets of ET estimates with field measurements at sixteen sites over five crop types (Alfalfa, Corn, Pasture, Tomato, and Beardless Wheat). Good agreement was found between satellite-based estimates and field measurements. Our results demonstrate that thermal data from the upcoming ECOSTRESS mission will reduce the uncertainty in ET estimates. A continuous monitoring of the dynamics and spatial heterogeneity of consumptive water use at a field scale will help prepare and inform to adaptively manage water, canopy, and planting density to maximize yield with least amount of water.

Groundwater quality in the western San Joaquin Valley, California

Science.gov (United States)

Fram, Miranda S.

2017-06-09

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. The Western San Joaquin Valley is one of the study units being evaluated. 

Paleohydrogeology of the San Joaquin basin, California

Science.gov (United States)

Wilson, A.M.; Garven, G.; Boles, J.R.

1999-01-01

Mass transport can have a significant effect on chemical diagenetic processes in sedimentary basins. This paper presents results from the first part of a study that was designed to explore the role of an evolving hydrodynamic system in driving mass transport and chemical diagenesis, using the San Joaquin basin of California as a field area. We use coupled hydrogeologic models to establish the paleohydrogeology, thermal history, and behavior of nonreactive solutes in the basin. These models rely on extensive geological information and account for variable-density fluid flow, heat transport, solute transport, tectonic uplift, sediment compaction, and clay dehydration. In our numerical simulations, tectonic uplift and ocean regression led to large-scale changes in fluid flow and composition by strengthening topography-driven fluid flow and allowing deep influx of fresh ground water in the San Joaquin basin. Sediment compaction due to rapid deposition created moderate overpressures, leading to upward flow from depth. The unusual distribution of salinity in the basin reflects influx of fresh ground water to depths of as much as 2 km and dilution of saline fluids by dehydration reactions at depths greater than ???2.5 km. Simulations projecting the future salinity of the basin show marine salinities persisting for more than 10 m.y. after ocean regression. Results also show a change from topography-to compaction-driven flow in the Stevens Sandstone at ca. 5 Ma that coincides with an observed change in the diagenetic sequence. Results of this investigation provide a framework for future hydrologic research exploring the link between fluid flow and diagenesis.

High Frequency Monitoring of Isotopic Signatures Elucidates Potential Effects of Restoring Floodplain Habitat in the Sacramento-San Joaquin Delta, California, USA

Science.gov (United States)

Nakamoto, B. J.; Fogel, M. L.; Jeffres, C.; Viers, J. H.

2017-12-01

Increasing the quality and quantity of habitat for native species in the Sacramento-San Joaquin Delta is a high priority for California water managers. The McCormack-Williamson Tract (MWT) is a subsided island (38.253° N -121.284° W) situated at the confluence of the Cosumnes and Mokelumne rivers, near the inland extent of tidal influence. MWT experienced unexpected levee failure on February 11, 2017, during the wettest year of record for the Mokelumne-Cosumnes river system, which provided a unique opportunity to examine the potential trajectory of future restoration actions within the Delta. We carried out high frequency sampling (n=32, 13% of days) of suspended particulate organic matter (SPOM) and waters in the Mokelumne and Cosumnes river systems, including nearby sloughs, and the post-failure, flooded interior of MWT. Carbon (δ13C) and nitrogen (δ15N) isotopes in SPOM and δ2H and δ18O of waters were analyzed and in situ water quality data were collected in tandem, thus contextualizing isotopic data. Sampling was confined to an 8 km2 region surrounding MWT (6.7 km2 interior). This unintentional flooding provided a natural before-after-control-impact experiment to study the effect that sudden inundation of a Delta island can have on food web development and ecosystem function. Source waters were isotopically distinct (p0.9), providing a semi-conservative tracer of mixing. The δ13C values of SPOM varied between -37.3 and -23.9‰ and were significantly more negative on the flooded island by 1.2‰ (porganic carbon concomitant with accelerated ecosystem metabolism. Concurrently, δ15N values varied between 1.0 and 12.4‰ and were not significantly different between riverine and flooded island sites. Our data indicate that this river system is highly dynamic over short periods of flood inundation (13 weeks) with new freshwater habitats exhibiting higher productivity than their riverine counterparts and could therefore increase autochthonous subsidies to

Determination of bench-mark elevations at Bethel Island and vicinity, Contra Costa and San Joaquin counties, California, 1987

Science.gov (United States)

Blodgett, J.C.; Ikehara, M.E.; McCaffrey, William F.

1988-01-01

Elevations of 49 bench marks in the southwestern part of the Sacramento-San Joaquin River Delta were determined during October and November 1987. A total of 58 miles of level lines were run in the vicinity of Bethel Island and the community of Discovery Bay. The datum of these surveys is based on a National Geodetic Survey bench mark T934 situated on bedrock 10.5 mi east of Mount Diablo and near Marsh Creek Reservoir. The accuracy of these levels, based on National Geodetic Survey standards, was of first, second, and third order, depending on the various segments surveyed. Several bench marks were noted as possibly being stable, but most show evidence of instability. (USGS)

Vertebrate fauna of the San Joaquin Experimental Range, California: a checklist

Science.gov (United States)

Thomas F. Newman; Don A. Duncan

1973-01-01

This report updates an earlier checklist, published in 1955, of vertebrate fauna found on the San Joaquin Experimental Range, in Madera County, California. Nineteen new species have been recorded since 1955. This report records the occurrences of seven fish, eight amphibians, 19 reptiles, 38 mammals, and 149 buds. References to research on individual species are...

A millennial-scale record of Pb and Hg contamination in peatlands of the Sacramento–San Joaquin Delta of California, USA

International Nuclear Information System (INIS)

Drexler, Judith Z.; Alpers, Charles N.; Neymark, Leonid A.; Paces, James B.; Taylor, Howard E.; Fuller, Christopher C.

2016-01-01

In this paper, we provide the first record of millennial patterns of Pb and Hg concentrations on the west coast of the United States. Peat cores were collected from two micro-tidal marshes in the Sacramento–San Joaquin Delta of California. Core samples were analyzed for Pb, Hg, and Ti concentrations and dated using radiocarbon and "2"1"0Pb. Pre-anthropogenic concentrations of Pb and Hg in peat ranged from 0.60 to 13.0 μg g"−"1and from 6.9 to 71 ng g"−"1, respectively. For much of the past 6000 + years, the Delta was free from anthropogenic pollution, however, beginning in ~ 1425 CE, Hg and Pb concentrations, Pb/Ti ratios, Pb enrichment factors (EFs), and HgEFs all increased. Pb isotope compositions of the peat suggest that this uptick was likely caused by smelting activities originating in Asia. The next increases in Pb and Hg contamination occurred during the California Gold Rush (beginning ~ 1850 CE), when concentrations reached their highest levels (74 μg g"−"1 Pb, 990 ng g"−"1 Hg; PbEF = 12 and HgEF = 28). Lead concentrations increased again beginning in the ~ 1920s with the incorporation of Pb additives in gasoline. The phase-out of lead additives in the late 1980s was reflected in changes in Pb isotope ratios and reductions in Pb concentrations in the surface layers of the peat. The rise and subsequent fall of Hg contamination was also tracked by the peat archive, with the highest Hg concentrations occurring just before 1963 CE and then decreasing during the post-1963 period. Overall, the results show that the Delta was a pristine region for most of its ~ 6700-year existence; however, since ~ 1425 CE, it has received Pb and Hg contamination from both global and regional sources. - Highlights: • Micro-tidal peats were used to trace Pb and Hg contamination through the millennia. • Anthropogenic Pb and Hg were first evident in California in ~ 1425 CE. • Pb isotopes suggest early contamination may be from ore smelting in China. • Pb (74 μg g

A millennial-scale record of Pb and Hg contamination in peatlands of the Sacramento–San Joaquin Delta of California, USA

Energy Technology Data Exchange (ETDEWEB)

Drexler, Judith Z., E-mail: jdrexler@usgs.gov [U.S. Geological Survey, California Water Science Center, 6000 J Street, Placer Hall, Sacramento, CA 95819-6129 (United States); Alpers, Charles N., E-mail: cnalpers@usgs.gov [U.S. Geological Survey, California Water Science Center, 6000 J Street, Placer Hall, Sacramento, CA 95819-6129 (United States); Neymark, Leonid A., E-mail: lneymark@usgs.gov [U.S. Geological Survey, Box 25046, MS963, Denver Federal Center, Denver, CO 80225 (United States); Paces, James B., E-mail: jbpaces@usgs.gov [U.S. Geological Survey, Box 25046, MS963, Denver Federal Center, Denver, CO 80225 (United States); Taylor, Howard E., E-mail: hetaylor@usgs.gov [U.S. Geological Survey, 3215 Marine Street, Suite E-127, Boulder, CO 80303 (United States); Fuller, Christopher C., E-mail: ccfuller@usgs.gov [U.S. Geological Survey, 345 Middlefield Road, MS465, Menlo Park, CA 94025 (United States)

2016-05-01

In this paper, we provide the first record of millennial patterns of Pb and Hg concentrations on the west coast of the United States. Peat cores were collected from two micro-tidal marshes in the Sacramento–San Joaquin Delta of California. Core samples were analyzed for Pb, Hg, and Ti concentrations and dated using radiocarbon and {sup 210}Pb. Pre-anthropogenic concentrations of Pb and Hg in peat ranged from 0.60 to 13.0 μg g{sup −1}and from 6.9 to 71 ng g{sup −1}, respectively. For much of the past 6000 + years, the Delta was free from anthropogenic pollution, however, beginning in ~ 1425 CE, Hg and Pb concentrations, Pb/Ti ratios, Pb enrichment factors (EFs), and HgEFs all increased. Pb isotope compositions of the peat suggest that this uptick was likely caused by smelting activities originating in Asia. The next increases in Pb and Hg contamination occurred during the California Gold Rush (beginning ~ 1850 CE), when concentrations reached their highest levels (74 μg g{sup −1} Pb, 990 ng g{sup −1} Hg; PbEF = 12 and HgEF = 28). Lead concentrations increased again beginning in the ~ 1920s with the incorporation of Pb additives in gasoline. The phase-out of lead additives in the late 1980s was reflected in changes in Pb isotope ratios and reductions in Pb concentrations in the surface layers of the peat. The rise and subsequent fall of Hg contamination was also tracked by the peat archive, with the highest Hg concentrations occurring just before 1963 CE and then decreasing during the post-1963 period. Overall, the results show that the Delta was a pristine region for most of its ~ 6700-year existence; however, since ~ 1425 CE, it has received Pb and Hg contamination from both global and regional sources. - Highlights: • Micro-tidal peats were used to trace Pb and Hg contamination through the millennia. • Anthropogenic Pb and Hg were first evident in California in ~ 1425 CE. • Pb isotopes suggest early contamination may be from ore smelting in China

Plant community, primary productivity, and environmental conditions following wetland re-establishment in the Sacramento-San Joaquin Delta, California

Science.gov (United States)

Miller, R.L.; Fujii, R.

2010-01-01

Wetland restoration can mitigate aerobic decomposition of subsided organic soils, as well as re-establish conditions favorable for carbon storage. Rates of carbon storage result from the balance of inputs and losses, both of which are affected by wetland hydrology. We followed the effect of water depth (25 and 55 cm) on the plant community, primary production, and changes in two re-established wetlands in the Sacramento San-Joaquin River Delta, California for 9 years after flooding to determine how relatively small differences in water depth affect carbon storage rates over time. To estimate annual carbon inputs, plant species cover, standing above- and below-ground plant biomass, and annual biomass turnover rates were measured, and allometric biomass models for Schoenoplectus (Scirpus) acutus and Typha spp., the emergent marsh dominants, were developed. As the wetlands developed, environmental factors, including water temperature, depth, and pH were measured. Emergent marsh vegetation colonized the shallow wetland more rapidly than the deeper wetland. This is important to potential carbon storage because emergent marsh vegetation is more productive, and less labile, than submerged and floating vegetation. Primary production of emergent marsh vegetation ranged from 1.3 to 3.2 kg of carbon per square meter annually; and, mid-season standing live biomass represented about half of the annual primary production. Changes in species composition occurred in both submerged and emergent plant communities as the wetlands matured. Water depth, temperature, and pH were lower in areas with emergent marsh vegetation compared to submerged vegetation, all of which, in turn, can affect carbon cycling and storage rates. ?? Springer Science+Business Media B.V. 2009.

Trends in nutrient concentrations, loads, and yields in streams in the Sacramento, San Joaquin, and Santa Ana Basins, California, 1975-2004

Science.gov (United States)

Kratzer, Charles R.; Kent, Robert; Seleh, Dina K.; Knifong, Donna L.; Dileanis, Peter D.; Orlando, James L.

2011-01-01

A comprehensive database was assembled for the Sacramento, San Joaquin, and Santa Ana Basins in California on nutrient concentrations, flows, and point and nonpoint sources of nutrients for 1975-2004. Most of the data on nutrient concentrations (nitrate, ammonia, total nitrogen, orthophosphate, and total phosphorus) were from the U.S. Geological Survey's National Water Information System database (35.2 percent), the California Department of Water Resources (21.9 percent), the University of California at Davis (21.6 percent), and the U.S. Environmental Protection Agency's STOrage and RETrieval database (20.0 percent). Point-source discharges accounted for less than 1 percent of river flows in the Sacramento and San Joaquin Rivers, but accounted for close to 80 percent of the nonstorm flow in the Santa Ana River. Point sources accounted for 4 and 7 percent of the total nitrogen and total phosphorus loads, respectively, in the Sacramento River at Freeport for 1985-2004. Point sources accounted for 8 and 17 percent of the total nitrogen and total phosphorus loads, respectively, in the San Joaquin River near Vernalis for 1985-2004. The volume of wastewater discharged into the Santa Ana River increased almost three-fold over the study period. However, due to improvements in wastewater treatment, the total nitrogen load to the Santa Ana River from point sources in 2004 was approximately the same as in 1975 and the total phosphorus load in 2004 was less than in 1975. Nonpoint sources of nutrients estimated in this study included atmospheric deposition, fertilizer application, manure production, and tile drainage. The estimated dry deposition of nitrogen exceeded wet deposition in the Sacramento and San Joaquin Valleys and in the basin area of the Santa Ana Basin, with ratios of dry to wet deposition of 1.7, 2.8, and 9.8, respectively. Fertilizer application increased appreciably from 1987 to 2004 in all three California basins, although manure production increased in the

Physical characteristics of the lower San Joaquin River, California, in relation to white sturgeon spawning habitat, 2011–14

Science.gov (United States)

Marineau, Mathieu D.; Wright, Scott A.; Whealdon-Haught, Daniel R.; Kinzel, Paul J.

2017-07-19

The U.S. Fish and Wildlife Service confirmed that white sturgeon (Acipenser transmontanus) recently spawned in the lower San Joaquin River, California. Decreases in the San Francisco Bay estuary white sturgeon population have led to an increased effort to understand their migration behavior and habitat preferences. The preferred spawning habitat of other white sturgeon (for example, those in the Columbia and Klamath Rivers) is thought to be areas that have high water velocity, deep pools, and coarse bed material. Coarse bed material (pebbles and cobbles), in particular, is important for the survival of white sturgeon eggs and larvae. Knowledge of the physical characteristics of the lower San Joaquin River can be used to preserve sturgeon spawning habitat and lead to management decisions that could help increase the San Francisco Bay estuary white sturgeon population.Between 2011 and 2014, the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, assessed selected reaches and tributaries of the lower river in relation to sturgeon spawning habitat by (1) describing selected spawning reaches in terms of habitat-related physical characteristics (such as water depth and velocity, channel slope, and bed material) of the lower San Joaquin River between its confluences with the Stanislaus and Merced Rivers, (2) describing variations in these physical characteristics during wet and dry years, and (3) identifying potential reasons for these variations.The lower San Joaquin River was divided into five study reaches. Although data were collected from all study reaches, three subreaches where the USFWS collected viable eggs at multiple sites in 2011–12 from Orestimba Creek to Sturgeon Bend were of special interest. Water depth and velocity were measured using two different approaches—channel cross sections and longitudinal profiles—and data were collected using an acoustic Doppler current profiler.During the first year of data collection (water

78 FR 13643 - Intent To Prepare a Draft Environmental Impact Statement for the Proposed Delta Wetlands Project...

Science.gov (United States)

2013-02-28

... DEPARTMENT OF DEFENSE Department of the Army, Corps of Engineers Intent To Prepare a Draft Environmental Impact Statement for the Proposed Delta Wetlands Project in San Joaquin and Contra Costa Counties... Joaquin County and Holland Tract and Webb Tract are located in Contra Costa County. A wetland delineation...

Distribution and movements of female northern pintails radiotagged in San Joaquin Valley, California

Science.gov (United States)

Fleskes, Joseph P.; Jarvis, Robert L.; Gilmer, David S.

2002-01-01

To improve understanding of northern pintail (Anas acuta) distribution in central California (CCA), we radiotagged 191 Hatch-Year (HY) and 228 After-Hatch-Year (AHY) female northern pintails during late August-early October, 1991-1993, in the San Joaquin Valley (SJV) and studied their movements through March each year. Nearly all (94.3%) wintered in CCA, but 5.7% went to southern California, Mexico, or unknown areas; all that went south left before hunting season. Of the 395 radiotagged pintails that wintered in CCA, 83% flew from the SJV north to other CCA areas (i.e., Sacramento Valley [SACV], Sacramento-San Joaquin River Delta [Delta], Suisun Marsh, San Francisco Bay) during September-January; most went during December. Movements coincid- ed with start of hunting seasons and were related to pintail age, mass, capture location, study year, and weather. Among pintails with less than average mass, AHY individuals tended to leave the SJV earlier than HY individuals. Weekly distribution was similar among capture locations and years but a greater percentage of pintails radiotagged in Tulare Basin (south part of SJV) were known to have (10.3% vs. 0.9%) or probably (13.8% vs. 4.6%) wintered south of CCA than pintails radiotagged in northern SJV areas (i.e., Grassland Ecological Area [EA] and Mendota Wildlife Area [WA]). Also, a greater percentage of SJV pintails went to other CCA areas before hunting season in the drought year of 1991-1992 than later years (10% vs. 3-5%). The percent of radiotagged pintails from Grass- land EA known to have gone south of CCA also was greater during 1991-1992 than later years (2% vs. 0%), but both the known (19% vs. 4%) and probable (23% vs. 12%) percent from Tulare Basin that went south was greatest during 1993-1994, when availability of flooded fields there was lowest. The probability of pintails leaving the SJV was 57% (95% CI = 8-127%) greater on days with than without rain, and more movements per bird out of SJV occurred in years

Agricultural peatland restoration: effects of land-use change on greenhouse gas (CO2 and CH4) fluxes in the Sacramento-San Joaquin Delta.

Science.gov (United States)

Knox, Sara Helen; Sturtevant, Cove; Matthes, Jaclyn Hatala; Koteen, Laurie; Verfaillie, Joseph; Baldocchi, Dennis

2015-02-01

Agricultural drainage of organic soils has resulted in vast soil subsidence and contributed to increased atmospheric carbon dioxide (CO2) concentrations. The Sacramento-San Joaquin Delta in California was drained over a century ago for agriculture and human settlement and has since experienced subsidence rates that are among the highest in the world. It is recognized that drained agriculture in the Delta is unsustainable in the long-term, and to help reverse subsidence and capture carbon (C) there is an interest in restoring drained agricultural land-use types to flooded conditions. However, flooding may increase methane (CH4) emissions. We conducted a full year of simultaneous eddy covariance measurements at two conventional drained agricultural peatlands (a pasture and a corn field) and three flooded land-use types (a rice paddy and two restored wetlands) to assess the impact of drained to flooded land-use change on CO2 and CH4 fluxes in the Delta. We found that the drained sites were net C and greenhouse gas (GHG) sources, releasing up to 341 g C m(-2) yr(-1) as CO2 and 11.4 g C m(-2) yr(-1) as CH4. Conversely, the restored wetlands were net sinks of atmospheric CO2, sequestering up to 397 g C m(-2) yr(-1). However, they were large sources of CH4, with emissions ranging from 39 to 53 g C m(-2) yr(-1). In terms of the full GHG budget, the restored wetlands could be either GHG sources or sinks. Although the rice paddy was a small atmospheric CO2 sink, when considering harvest and CH4 emissions, it acted as both a C and GHG source. Annual photosynthesis was similar between sites, but flooding at the restored sites inhibited ecosystem respiration, making them net CO2 sinks. This study suggests that converting drained agricultural peat soils to flooded land-use types can help reduce or reverse soil subsidence and reduce GHG emissions. © 2014 John Wiley & Sons Ltd.

78 FR 39597 - Safety Zone; Hilton Fourth of July Fireworks, San Joaquin River, Venice Island, CA

Science.gov (United States)

2013-07-02

... Zone; Hilton Fourth of July Fireworks, San Joaquin River, Venice Island, CA AGENCY: Coast Guard, DHS... the Hilton Fourth of July Fireworks in the Captain of the Port, San Francisco area of responsibility...'' W (NAD83) for the Hilton Fourth of July Fireworks in 33 CFR 165.1191, Table 1, Item number 17. This...

A Place to Call Home: A Synthesis of Delta Smelt Habitat in the Upper San Francisco Estuary

Directory of Open Access Journals (Sweden)

Ted Sommer

2013-06-01

Full Text Available We used a combination of published literature and field survey data to synthesize the available information about habitat use by delta smelt Hypomesus transpacificus, a declining native species in the San Francisco Estuary. Delta smelt habitat ranges from San Pablo and Suisun bays to their freshwater tributaries, including the Sacramento and San Joaquin rivers. In recent years, substantial numbers of delta smelt have colonized habitat in Liberty Island, a north Delta area that flooded in 1997. The species has a more upstream distribution during spawning as opposed to juvenile rearing periods. Post-larvae and juveniles tend to have a more downstream distribution during wetter years. Delta smelt are most common in low-salinity habitat (<6 psu with high turbidities (>12 NTU and moderate temperatures (7 °C to 25 °C. They do not appear to have strong substrate preferences, but sandy shoals are important for spawning in other osmerids. The evidence to date suggests that they generally require at least some tidal flow in their habitats. Delta smelt also occur in a wide range of channel sizes, although they seem to be rarer in small channels (<15 m wide. Nonetheless, there is some evidence that open water adjacent to habitats with long water-residence times (e.g. tidal marsh, shoal, low-order channels may be favorable. Other desirable features of delta smelt habitat include high calanoid copepod densities and low levels of submerged aquatic vegetation (SAV and the toxic algae Microcystis. Although enough is known to plan for large-scale pilot habitat projects, these efforts are vulnerable to several factors, most notably climate change, which will change salinity regimes and increase the occurrence of lethal temperatures. We recommend restoration of multiple geographical regions and habitats coupled with extensive monitoring and adaptive management. An overall emphasis on ecosystem processes rather than specific habitat features is also likely to be

Is it restoration or reconciliation? California's experience restoring the Sacramento - San Joaquin River Delta provides lessons learned and pathways forward to sustain critical ecosystem functions and services in a highly managed riverine delta.

Science.gov (United States)

Viers, J. H.; Kelsey, R.

2014-12-01

Reconciling the needs of nature and people in California's Sacramento - San Joaquin River Delta represents one of the most critical ecosystem management imperatives in western North America. Over 150 years the Delta has been managed for near-term human benefits and in the process 95% of riverine and deltaic wetlands have been lost throughout the region. Despite extensive land conversion and alteration of hydrological and physical processes, the Delta remains important habitat for migratory birds and is home to over 60% of California's native fish species. It is also the waterwheel for the state's vast water distribution network and is maintained by a system of constructed levees that are at risk from catastrophic failure due to sea level rise, floods, and/or seismic activity. Such a collapse would have dire consequences for > 25M humans and world's 10th largest economy that depend on its freshwater. Thus, the ultimate cost of this ecosystem alteration and simplification is a riverscape that is no longer reliable for nature or people. For 30 years, attempts to 'restore' Delta ecosystems and improve reliability have met with mixed results. For example, reconnection of floodplains to floodwaters has resulted in improved ecological health for native fishes and recharge to localized aquifers. Uncoordinated releases of discharges below dams, however, have resulted in diminished water quality and populations of indicator species. Attempts to create wildlife friendly farms have been countered by an increase in perennial agriculture and commensurate increases in irrigation water demand. From these lessons learned, we demonstrate three key components of a reconciled Delta that will be necessary in the future: 1) full restoration of critical habitats, reconnecting land and water to rebuild ecosystem function; 2) landscape redesign, incorporating natural and engineered infrastructure to create a biologically diverse, resilient landscape to support both agriculture and natural

Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management

Directory of Open Access Journals (Sweden)

A. Peter Klimley

2015-12-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2015v13iss4art1The goal of a day-long symposium on March 3, 2015, Sturgeon in the Sacramento–San Joaquin Watershed: New Insights to Support Conservation and Management, was to present new information about the physiology, behavior, and ecology of the green (Acipenser medirostris and white sturgeon (Acipenser transmontanus to help guide enhanced management and conservation efforts within the Sacramento–San Joaquin watershed. This symposium identified current unknowns and highlighted new electronic tracking technologies and physiological techniques to address these knowledge gaps. A number of presentations, each reviewing ongoing research on the two species, was followed by a round-table discussion, in which each of the participants was asked to share recom-mendations for future research on sturgeon in the watershed. This article presents an in-depth review of the scientific information presented at the sympo-sium with a summary of recommendations for future research.

Connecting Past to Present and Watersheds to Ocean: Modeling 165 Years of Incremental Changes to Flows into the San Francisco Bay Delta System

Science.gov (United States)

MacVean, L. J.; Thompson, S. E.; Huttom, P. H.; Sivapalan, M.

2016-02-01

California's Sacramento-San Joaquin Delta sits at the intersection of vast agricultural and population centers, and supplies fresh water for the diverse and often competing needs of ecosystems, farmers, and millions of Californians. Managing and allocating this resource is a complex feat of economics, politics, and engineering, made increasingly contentious by the ongoing drought. The objective of this research is to augment the scientific foundation of management decisions by addressing the question of how flows into the Delta have evolved in response to human intervention since 1850. In particular, quantifying the dynamic components of water usage through vegetative uptake and evapotranspiration, groundwater recharge, flood conveyance, and water exports at incremental levels of development is a key ambition. This approach emphasizes the built environment, which is subject to the local regulatory framework, rather than climate change, which is generally considered immovable without united global effort. This work encompasses the creation of a hydrologic model representing the watersheds of the San Francisco Bay-Delta system, and quantifies the impacts of changes in land use and the gradual construction of levees, reservoirs, and diversion infrastructure. The model is run using the same climatological forcing at each level of development, thus elucidating the effects of local anthropogenic activity on the Delta and the inflows to the San Francisco Bay estuary. Our results provide a timeline of change, giving decision-makers a scientifically established baseline to aid in the sustainable management of the Bay-Delta system.

A Note on the Effect of Wind Waves on Vertical Mixing in Franks Tract, Sacramento–San Joaquin Delta, California

Directory of Open Access Journals (Sweden)

Nicole L. Jones

2008-06-01

Full Text Available A one-dimensional numerical model that simulates the effects of whitecapping waves was used to investigate the importance of whitecapping waves to vertical mixing at a 3-meter-deep site in Franks Tract in the Sacramento-San Joaquin Delta over an 11-day period. Locally-generated waves of mean period approximately 2 s were generated under strong wind conditions; significant wave heights ranged from 0 to 0.3 m. A surface turbulent kinetic energy flux was used to model whitecapping waves during periods when wind speeds > 5 m s-1 (62% of observations. The surface was modeled as a wind stress log-layer for the remaining 38% of the observations. The model results demonstrated that under moderate wind conditions (5–8 m s-1 at 10 m above water level, and hence moderate wave heights, whitecapping waves provided the dominant source of turbulent kinetic energy to only the top 10% of the water column. Under stronger wind (> 8 m s-1, and hence larger wave conditions, whitecapping waves provided the dominant source of turbulent kinetic energy over a larger portion of the water column; however, this region extended to the bottom half of the water column for only 7% of the observation period. The model results indicated that phytoplankton concentrations close to the bed were unlikely to be affected by the whitecapping of waves, and that the formation of concentration boundary layers due to benthic grazing was unlikely to be disrupted by whitecapping waves. Furthermore, vertical mixing of suspended sediment was unlikely to be affected by whitecapping waves under the conditions experienced during the 11-day experiment. Instead, the bed stress provided by tidal currents was the dominant source of turbulent kinetic energy over the bottom half of the water column for the majority of the 11-day period.

Executive Summary -- assessment of undiscovered oil and gas resources of the San Joaquin Basin Province of California, 2003: Chapter 1 in Petroleum systems and geologic assessment of oil and gas in the San Joaquin Basin Province, California

Science.gov (United States)

Gautier, Donald L.; Scheirer, Allegra Hosford; Tennyson, Marilyn E.; Peters, Kenneth E.; Magoon, Leslie B.; Lillis, Paul G.; Charpentier, Ronald R.; Cook, Troy A.; French, Christopher D.; Klett, Timothy R.; Pollastro, Richard M.; Schenk, Christopher J.

2007-01-01

In 2003, the U.S. Geological Survey (USGS) completed an assessment of the oil and gas resource potential of the San Joaquin Basin Province of California (fig. 1.1). The assessment is based on the geologic elements of each Total Petroleum System defined in the province, including hydrocarbon source rocks (source-rock type and maturation and hydrocarbon generation and migration), reservoir rocks (sequence stratigraphy and petrophysical properties), and hydrocarbon traps (trap formation and timing). Using this geologic framework, the USGS defined five total petroleum systems and ten assessment units within these systems. Undiscovered oil and gas resources were quantitatively estimated for the ten assessment units (table 1.1). In addition, the potential was estimated for further growth of reserves in existing oil fields of the San Joaquin Basin.

Watershed-Scale Modeling of Land-Use and Altered Environment Impacts on Aquatic Weed Growth in the Delta

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Bubenheim, David; Potter, Christopher; Zhang, Minghua

2016-01-01

The California Sacramento-San Joaquin River Delta is the hub for California's water supply, conveying water from Northern to Southern California agriculture and communities while supporting important ecosystem services, agriculture, and communities in the Delta. Changes in climate, long-term drought, and water quality have all been suspected as playing role in the dramatic expansion of invasive aquatic plants and their impact on ecosystems of the San Francisco Bay / California Delta complex. NASA Ames Research Center, USDA-Agricultural Research Service, the State of California, UC Davis, and local governments have partnered under a USDA sponsored project (DRAAWP) to develop science-based, adaptive-management strategies for invasive aquatic plants in Sacramento-San Joaquin Delta. Critical to developing management strategies is to understand how the Delta is affected by both the magnitude of fluctuations in land-use and climate / drought induced altered environments and how the plants respond to these altered environments. We utilize the Soil Water Assessment Tool (SWAT), a watershed-scale model developed to quantify the impact of land management practices in large and complex watersheds on water quality, as the backbone for a customized Delta model - Delta-SWAT. The model uses land-use, soils, elevation, and hydrologic routing to characterize pesticide and nutrient transport from the Sacramento and San Joaquin rivers watersheds and loading into the Delta. Land-use within the Delta, as well as water extraction to supply those functions, and the resulting return of water to Delta waterways are included in Delta-SWAT. Hydrologic transport within the Delta has required significant attention to address the lack of elevation driven transport processes. Delta-SWAT water quality trend estimates are compared with water quality monitoring conducted throughout the Delta. Aquatic plant response to water quality and other environmental factors is carried out using a customized

Characterizing Drought Impacted Soils in the San Joaquin Valley of California Using Remote Sensing

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Wahab, L. M.; Miller, D.; Roberts, D. A.

2017-12-01

California's San Joaquin Valley is an extremely agriculturally productive region of the country, and understanding the state of soils in this region is an important factor in maintaining this high productivity. In this study, we quantified changing soil cover during the drought and analyzed spatial changes in salinity, organic matter, and moisture using unique soil spectral characteristics. We used data from the Airborne Visible / Infrared Imaging Spectrometer (AVIRIS) from Hyperspectral Infrared Imager (HyspIRI) campaign flights in 2013 and 2014 over the San Joaquin Valley. A mixture model was applied to both images that identified non- photosynthetic vegetation, green vegetation, and soil cover fractions through image endmembers of each of these three classes. We optimized the spectral library used to identify these classes with Iterative Endmember Selection (IES), and the images were unmixed using Multiple Endmember Spectral Mixture Analysis (MESMA). Maps of soil electrical conductivity, organic matter, soil saturated moisture, and field moisture were generated for the San Joaquin Valley based on indices developed by Ben-Dor et al. [2002]. Representative polygons were chosen to quantify changes between years. Maps of spectrally distinct soils were also generated for 2013 and 2014, in order to determine the spatial distribution of these soil types as well as their temporal dynamics between years. We estimated that soil cover increased by 16% from 2013-2014. Six spectrally distinct soil types were identified for the region, and it was determined that the distribution of these soil types was not constant for most areas between 2013 and 2014. Changes in soil pH, electrical conductivity, and soil moisture were strongly tied in the region between 2013 and 2014.

Detritus fuels ecosystem metabolism but not metazoan food webs in San Francisco estuary's freshwater delta

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Sobczak, W.V.; Cloern, J.E.; Jassby, A.D.; Cole, B.E.; Schraga, T.S.; Arnsberg, A.

2005-01-01

Detritus from terrestrial ecosystems is the major source of organic matter in many streams, rivers, and estuaries, yet the role of detritus in supporting pelagic food webs is debated. We examined the importance of detritus to secondary productivity in the Sacramento and San Joaquin River Delta (California, United States), a large complex of tidal freshwater habitats. The Delta ecosystem has low primary productivity but large detrital inputs, so we hypothesized that detritus is the primary energy source fueling production in pelagic food webs. We assessed the sources, quantity, composition, and bioavailability of organic matter among a diversity of habitats (e.g., marsh sloughs, floodplains, tidal lakes, and deep river channels) over two years to test this hypothesis. Our results support the emerging principle that detritus dominates riverine and estuarine organic matter supply and supports the majority of ecosystem metabolism. Yet in contrast to prevailing ideas, we found that detritus was weakly coupled to the Delta's pelagic food web. Results from independent approaches showed that phytoplankton production was the dominant source of organic matter for the Delta's pelagic food web, even though primary production accounts for a small fraction of the Delta's organic matter supply. If these results are general, they suggest that the value of organic matter to higher trophic levels, including species targeted by programs of ecosystem restoration, is a function of phytoplankton production. ?? 2005 Estuarine Research Federation.

Concentrations and loads of suspended sediment-associated pesticides in the San Joaquin River, California and tributaries during storm events

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Hladik, M.L.; Domagalski, Joseph L.; Kuivila, K.M.

2009-01-01

Current-use pesticides associated with suspended sediments were measured in the San Joaquin River, California and its tributaries during two storm events in 2008. Nineteen pesticides were detected: eight herbicides, nine insecticides, one fungicide and one insecticide synergist. Concentrations for the herbicides (0.1 to 3000 ng/g; median of 6.1 ng/g) were generally greater than those for the insecticides (0.2 to 51 ng/g; median of 1.5 ng/g). Concentrations in the tributaries were usually greater than in the mainstem San Joaquin River and the west side tributaries were higher than the east side tributaries. Estimated instantaneous loads ranged from 1.3 to 320 g/day for herbicides and 0.03 to 53 g/day for insecticides. The greatest instantaneous loads came from the Merced River on the east side. Instantaneous loads were greater for the first storm of 2008 than the second storm in the tributaries while the instantaneous loads within the San Joaquin River were greater during the second storm. Pesticide detections generally reflected pesticide application, but other factors such as physical-chemical properties and timing of application were also important to pesticide loads.

Influence of anthropogenic alterations on geomorphic response to climate variations and change in San Francisco Bay-Delta and watershed

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Florsheim, J.L.; Dettinger, M.D.

2004-01-01

Global warming and attendant sea-level rise may soon impact geomorphic processes in the Sacramento-San Joaquin River and San Francisco Bay Delta systems. During the past two centuries, dramatic anthropogenic changes in sediment supply and pervasive structural controls on rivers and floodplains have altered geomorphic responses to floods throughout a zone that extends upstream from tidally influenced areas to dams that regulate flow. Current geomorphic responses to floods differ from natural responses due to historical actions that concentrated the pre-disturbance multiple-channel and flood-basin system into single channels isolated by levees from increasingly developed floodplains and flood bypass channels, altered flow and sediment regimes, and caused subsidence of leveed Delta Islands. A review of historic and current geomorphic responses to floods illustrates the dominance of structural controls on geomorphic changes in the lowland part of the Sacramento-San Joaquin system. Current climate-change projections for CA suggest that the total volume of snowmelt runoff that may be shifted from spring and added to winter flows is roughly 5 maf/yr, similar to the volume currently available for flood storage in Sierra Nevadan reservoirs. Changes in timing of reservoir releases to accommodate these changes could add to either the magnitude or duration of winter flood peaks, each causing different geomorphic responses. Increased wintertime flows that accompany already large floods could increase overbank flood extent, erosion, and sedimentation, or alternatively increase the depth and strength of confined flows and increase the risk of levee failures. Runoff released from reservoirs as a relatively constant addition to winter baseflow would increase the duration of bankfull or possibly "levee-full" flows. This scenario could lead to bank and levee failure through increased saturation and seepage erosion. Projected sea level rise of 1-2 m would compound vulnerability of

Occurrence and distribution of dissolved pesticides in the San Joaquin River basin, California

Science.gov (United States)

Panshin, Sandra Yvonne; Dubrovsky, Neil M.; Gronberg, JoAnn M.; Domagalski, Joseph L.

1998-01-01

The effects of pesticide application, hydrology, and chemical and physical properties on the occurrence of pesticides in surface water in the San Joaquin River Basin, California, were examined. The study of pesticide occurrence in the highly agricultural San Joaquin?Tulare Basins is part of the National Water-Quality Assessment Program of the U.S. Geological Survey. One hundred forty-three water samples were collected throughout 1993 from sites on the San Joaquin River and three of its tributaries: Orestimba Creek, Salt Slough, and the Merced River. Of the 83 pesticides selected for analysis in this study, 49 different compounds were detected in samples from the four sites and ranged in concentration from less than the detection limit to 20 micrograms per liter. All but one sample contained at least one pesticide, and more than 50 percent of the samples contained seven or more pesticides. Six compounds were detected in more than 50 percent of the samples: four herbicides (dacthal, EPTC, metolachlor, and simazine) and two insecticides (chlorpyrifos and diazinon). None of the measured concentrations exceeded U.S. Environmental Protection Agency drinking water criteria, and many of the measured concentrations were very low. The concentrations of seven pesticides exceeded criteria for the protection of freshwater aquatic life: azinphos-methyl, carbaryl, chlorpyrifos, diazinon, diuron, malathion, and trifluralin. Overall, some criteria for protection of aquatic life were exceeded in a total of 97 samples. Factors affecting the spatial patterns of occurrence of the pesticides in the different subbasins included the pattern of application and hydrology. Seventy percent of pesticides with known application were detected. Overall, 40 different pesticides were detected in Orestimba Creek, 33 in Salt Slough, and 26 in the Merced River. Samples from the Merced River had a relatively low number of detections, despite the high number (35) of pesticides applied, owing to the

76 FR 38340 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-06-30

... also harm human health and the environment by causing, among other things, premature mortality, aggravation of respiratory and cardiovascular disease, visibility impairment, and damage to vegetation and... the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District...

Thermal history of rocks in southern San Joaquin Valley, California: evidence from fission-track analysis

Science.gov (United States)

Naeser, N.D.; Naeser, C.W.; McCulloh, T.H.

1990-01-01

Fission-track analysis has been used to study the thermal and depositional history of the subsurface Tertiary sedimentary rocks on both sides of the active White Wolf reverse fault in the southern San Joaquin Valley. The distinctly different thermal histories of the rocks in the two structural blocks are clearly reflected in the apatite fission-track data, which suggest that rocks in the rapidly subsiding basin northwest of the fault have been near their present temperature for only about 1 m.y. compared with about 10 m.y. for rocks southeast of the fault. These estimates of heating time agree with previous estimates for these rocks. Zircon fission-track data indicate that the Tertiary sediments were derived from parent rocks of more than one age. However, from at least the Eocene to late Miocene or Pliocene, the major sediment source was rocks related to the youngest Sierra Nevada Mesozoic intrusive complexes, which are presently exposed east and south of the southern San Joaquin Valley. -from Authors

Real-time management of water quality in the San Joaquin River Basin, California.

Energy Technology Data Exchange (ETDEWEB)

Quinn, N.W.T.; Karkoski, J.

1997-09-01

In the San Joaquin River Basin, California, a realtime water quality forecasting model was developed to help improve the management of saline agricultural and wetland drainage to meet water quality objectives. Predicted salt loads from the water quality forecasting model, SJRIODAY, were consistently within +- 11 percent of actual, within +- 14 percent for seven-day forecasts, and with in +- 26 percent for 14-day forecasts for the 16-month trial period. When the 48 days dominated by rainfall/runoff events were eliminated from the data set, the error bar decreased to +- 9 percent for the model and +- 11 percent and +- 17 percent for the seven-day and 14-day forecasts, respectively. Constraints on the use of the model for salinity management on the San Joaquin River include the number of entities that control or influence water quality and the lack of a centralized authority to direct their activities. The lack of real-time monitoring sensors for other primary constituents of concern, such as selenium and boron, limits the application of the model to salinity at the present time. A case study describes wetland drainage releases scheduled to coincide with high river flows and significant river assimilative capacity for salt loads.

Benthic Ammonia Oxidizers Differ in Community Structure and Biogeochemical Potential Across a Riverine Delta

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Julian eDamashek

2015-01-01

Full Text Available Nitrogen pollution in coastal zones is a widespread issue, particularly in ecosystems with urban or agricultural watersheds. California’s Sacramento-San Joaquin Delta, at the landward reaches of San Francisco Bay, is highly impacted by both agricultural runoff and sewage effluent, leading to chronically high nutrient loadings. In particular, the massive discharge of ammonium into the Sacramento River has altered this ecosystem by increasing ammonium concentrations and thus changing the stoichiometry of inorganic nitrogen stocks, with potential effects throughout the food web. To date, however, there has been little research examining N biogeochemistry or N-cycling microbial communities in this system. We report the first data on benthic ammonia-oxidizing microbial communities and potential nitrification rates for the Sacramento-San Joaquin Delta, focusing on the functional gene amoA (encoding the α-subunit of ammonia monooxygenase. There were stark regional differences in ammonia-oxidizing communities, with ammonia-oxidizing bacteria (AOB outnumbering ammonia-oxidizing archaea (AOA only in the ammonium-rich Sacramento River. High potential nitrification rates in the Sacramento River suggested these communities may be capable of oxidizing significant amounts of ammonium, compared to the San Joaquin River and the upper reaches of San Francisco Bay. Gene diversity also showed regional patterns, as well as phylogenetically unique ammonia oxidizers in the Sacramento River. The community structure and biogeochemical function of benthic ammonia oxidizers appears related to nutrient loadings. Unraveling the microbial ecology and biogeochemistry of N cycling pathways is a critical step toward understanding how such ecosystems respond to the changing environmental conditions wrought by human development and climate change.

76 FR 35167 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-06-16

... ENVIRONMENTAL PROTECTION AGENCY 40 CFR Part 52 [EPA-R09-OAR-2011-0312; FRL-9319-8] Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District... Subjects in 40 CFR Part 52 Environmental protection, Air pollution control, Intergovernmental relations...

Social Disparities in Drinking Water Quality in California's San Joaquin Valley

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Ray, I.; Balazs, C.; Hubbard, A.; Morello-Frosch, R.

2011-12-01

Social Disparities in Drinking Water Quality in California's San Joaquin Valley Carolina Balazs, Rachel Morello-Frosch, Alan Hubbard and Isha Ray Little attention has been given to research on social disparities and environmental justice in access to safe drinking water in the USA. We examine the relationship between nitrate and arsenic concentrations in community water systems (CWS) and the ethnic and socioeconomic characteristics of their customers. We hypothesized that systems in the San Joaquin Valley that serve a higher proportion of minority (especially Latino) residents, and/or lower socioeconomic status (proxied by rates of home ownership) residents, have higher nitrate levels and higher arsenic levels. We used water quality monitoring datasets (1999-2001) to estimate nitrate as well as arsenic levels in CWS, and source location and Census block group data to estimate customer demographics. We found that percent Latino was associated with a .04 mg NO3/L increase in a CWS' estimated nitrate ion concentration (95% CI, -.08, .16) and rate of home ownership was associated with a .16 mg NO3/L decrease (95% CI, -.32, .002). We also found that each percent increase in home ownership rate was associated with a .30 ug As/L decrease in arsenic concentrations (pcompliance burdens in accordance with EPA standards fell most heavily on socio-economically disadvantaged communities. Selected References Cory DC, Rahman T. 2009. Environmental justice and enforcement of the safe drinking water act: The arizona arsenic experience. Ecological Economics 68: 1825-1837. Krieger N, Williams DR, Moss NE. 1997. Measuring social class in us public health research: Concepts, methodologies, and guidelines. Annual Review of Public Health 18(341-378). Moore E, Matalon E, Balazs C, Clary J, Firestone L, De Anda S, Guzman, M. 2011. The human costs of nitrate-contaminated drinking water in the San Joaquin Valley. Oakland, CA: Pacific Institute. Morello-Frosch R, Pastor M, Sadd J. 2001

76 FR 69895 - Approval and Promulgation of Implementation Plans; California; 2008 San Joaquin Valley PM2.5

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2011-11-09

... Board, 1001 I Street, Sacramento, California 95812 San Joaquin Valley Air Pollution Control District.../reasonably available control technology demonstration, reasonable further progress demonstration, attainment... 5, 2015 and approving commitments to measures and reductions by the SJV Unified Air Pollution...

In the San Joaquin Valley, hardly a sprinkle

International Nuclear Information System (INIS)

Holson, L.M.

1993-01-01

California has declared its six-year drought over, but in the San Joaquin Valley, center of the state's $18.5 billion agriculture industry, it lives on. The two weeks of strong rain this winter that swelled reservoirs and piled snow on the mountains is only trickling toward the region's nearly 20,000 farms. Federal water officials are under heavy pressure from the Environmental Protection Agency, which wants to improve water quality, and are worried about the plight of endangered fish in the Sacramento River. So, on March 12 they announced they will send farmers only 40% of the water allotments they got before the drought. The rest is being held against possible shortages. For the once-green valley, another year without water has brought many farmers perilously close to extinction

Long-term impacts due to sediment supply changes towards the San Francisco Bay-Delta system

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Achete, F.; Van der Wegen, M. V.; Jaffe, B. E.

2012-12-01

The Sacramento-San Joaquin Delta and Watershed is the main source of fresh water and sediment to San Francisco Bay. Mid 19th century hydraulic mining in the catchment caused an excessive supply of sediment. After mining activities stopped, in the first part of the 20th century several hydraulic structures were built deviating fresh water and trapping sediment upstream. The main purpose of most of these structures is water storage for irrigation and/or water supply Wright and Schoellhamer (2004) show that from 1957 to 2001 the sediment load carried to San Francisco Bay has decreased by about one half. The lack of sediments may lead to a different erosion/deposition pattern in the Bay-Delta system causing problems like mud flat erosion, shift in navigation channel, land subsidence and changing habitat for endemic species. The objective of this work is to identify and quantify morphological shifts in the Bay-Delta system due to variation in fresh water and sediment supply. In this study, we couple the Delta and Bay in a unique model network (the Delta-Bay model). This coupling allows tracking of sediment from Sacramento via the Delta and Bay and through the Golden Gate, making it possible to identify erosion and deposition areas. The numerical model applied is an unstructured, process-based model (D-Flow Flexible Mesh developed by Deltares). It simulates the hydrodynamics and morphodynamics of the area on a detailed, 64000-node mesh (10-200m mesh length scale) on a timescale of minutes. The morphological impact is assessed for multiple scenarios with different input of sediment and fresh water. A statistical analysis is performed to account for uncertainty of model parameters and climate change impacts. The fresh water discharge already has a strong natural seasonal and inter-annual variation. The human impact by foreseen different water pumping strategies due to the peripheral canal will be considered. Jaffe et al. (2007) has shown that substantial morphological

Modeling tidal freshwater marsh sustainability in the Sacramento-San Joaquin Delta under a broad suite of potential future scenarios

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Swanson, Kathleen M.; Drexler, Judith Z.; Fuller, Christopher C.; Schoellhamer, David H.

2015-01-01

In this paper, we report on the adaptation and application of a one-dimensional marsh surface elevation model, the Wetland Accretion Rate Model of Ecosystem Resilience (WARMER), to explore the conditions that lead to sustainable tidal freshwater marshes in the Sacramento–San Joaquin Delta. We defined marsh accretion parameters to encapsulate the range of observed values over historic and modern time-scales based on measurements from four marshes in high and low energy fluvial environments as well as possible future trends in sediment supply and mean sea level. A sensitivity analysis of 450 simulations was conducted encompassing a range of eScholarship provides open access, scholarly publishing services to the University of California and delivers a dynamic research platform to scholars worldwide. porosity values, initial elevations, organic and inorganic matter accumulation rates, and sea-level rise rates. For the range of inputs considered, the magnitude of SLR over the next century was the primary driver of marsh surface elevation change. Sediment supply was the secondary control. More than 84% of the scenarios resulted in sustainable marshes with 88 cm of SLR by 2100, but only 32% and 11% of the scenarios resulted in surviving marshes when SLR was increased to 133 cm and 179 cm, respectively. Marshes situated in high-energy zones were marginally more resilient than those in low-energy zones because of their higher inorganic sediment supply. Overall, the results from this modeling exercise suggest that marshes at the upstream reaches of the Delta—where SLR may be attenuated—and high energy marshes along major channels with high inorganic sediment accumulation rates will be more resilient to global SLR in excess of 88 cm over the next century than their downstream and low-energy counterparts. However, considerable uncertainties exist in the projected rates of sea-level rise and sediment avail-ability. In addition, more research is needed to constrain future

Subsidence, Sea Level Rise, and Seismicity in the Sacramento–San Joaquin Delta

Directory of Open Access Journals (Sweden)

Jeffrey Mount

2005-03-01

Full Text Available Anthropogenic accommodation space, or that space in the Delta that lies below sea level and is filled neither with sediment nor water, serves as a useful measure of the regional consequences of Delta subsidence and sea level rise. Microbial oxidation and compaction of organic-rich soils due to farming activity is the primary cause of Delta subsidence. During the period 1900-2000, subsidence created approximately 2.5 billion cubic meters of anthropogenic accommodation space in the Delta. From 2000-2050, subsidence rates will slow due to depletion of organic material and better land use practices. However, by 2050 the Delta will contain more than 3 billion cubic meters of anthropogenic accommodation space due to continued subsidence and sea level rise. An Accommodation Space Index, which relates subaqueous accommodation space to anthropogenic accommodation space, provides an indicator of past and projected Delta conditions. While subsidence and sea level rise create increasing anthropogenic accommodation space in the Delta, they also lead to a regional increase in the forces that can cause levee failure. Although these forces take many forms, a Levee Force Index can be calculated that is a proxy for the cumulative forces acting on levees. The Levee Force Index increases significantly over the next 50 years demonstrating regional increases in the potential for island flooding. Based on continuing increases in the Levee Force Index and the Accommodation Space Index, and limited support for Delta levee upgrades, there will be a tendency for increases in and impacts of island flooding, with escalating costs for repairs. Additionally, there is a two-in-three chance that 100-year recurrence interval floods or earthquakes will cause catastrophic flooding and significant change in the Delta by 2050. Currently, the California Bay-Delta Authority has no overarching policy that addresses the consequences of, and potential responses to, gradual or abrupt

Population Structure of Xylella fastidiosa Associated with Almond Leaf Scorch Disease in the San Joaquin Valley of California.

Science.gov (United States)

Lin, Hong; Islam, Md Sajedul; Cabrera-La Rosa, Juan C; Civerolo, Edwin L; Groves, Russell L

2015-06-01

Xylella fastidiosa causes disease in many commercial crops, including almond leaf scorch (ALS) disease in susceptible almond (Prunus dulcis). In this study, genetic diversity and population structure of X. fastidiosa associated with ALS disease were evaluated. Isolates obtained from two almond orchards in Fresno and Kern County in the San Joaquin Valley of California were analyzed for two successive years. Multilocus simple-sequence repeat (SSR) analysis revealed two major genetic clusters that were associated with two host cultivars, 'Sonora' and 'Nonpareil', respectively, regardless of the year of study or location of the orchard. These relationships suggest that host cultivar selection and adaptation are major driving forces shaping ALS X. fastidiosa population structure in the San Joaquin Valley. This finding will provide insight into understanding pathogen adaptation and host selection in the context of ALS disease dynamics.

Use of ground-water reservoirs for storage of surface water in the San Joaquin Valley, California

Science.gov (United States)

Davis, G.H.; Lofgren, B.E.; Mack, Seymour

1964-01-01

The San Joaquin Valley includes roughly the southern two-thirds of the Central Valley of California, extending 250 miles from Stockton on the north to Grapevine at the foot of the Tehachapi Mountains. The valley floor ranges in width from 25 miles near Bakersfield to about 55 miles near Visalia; it has a surface area of about 10,000 square miles. More than one-quarter of all the ground water pumped for irrigation in the United States is used in this highly productive valley. Withdrawal of ground water from storage by heavy pumping not only provides a needed irrigation water supply, but it also lowers the ground-water level and makes storage space available in which to conserve excess water during periods of heavy runoff. A storage capacity estimated to be 93 million acre-feet to a depth of 200 feet is available in this ground-water reservoir. This is about nine times the combined capacity of the existing and proposed surface-water reservoirs in the San Joaquin Valley under the California Water Plan. The landforms of the San Joaquin Valley include dissected uplands, low plains and fans, river flood plains and channels, and overflow lands and lake bottoms. Below the land surface, unconsolidated sediments derived from the surrounding mountain highlands extend downward for hundreds of feet. These unconsolidated deposits, consisting chiefly of alluvial deposits, but including some widespread lacustrine sediments, are the principal source of ground water in the valley. Ground water occurs under confined and unconfined conditions in the San Joaquin Valley. In much of the western, central, and southeastern parts of the valley, three distinct ground-water reservoirs are present. In downward succession these are 1) a body of unconfined and semiconfined fresh water in alluvial deposits of Recent, Pleistocene, and possibly later Pliocene age, overlying the Corcoran clay member of the Tulare formation; 2) a body of fresh water confined beneath the Corcoran clay member, which

Factors affecting marsh vegetation at the Liberty Island Conservation Bank in the Cache Slough region of the Sacramento–San Joaquin Delta, California

Science.gov (United States)

Orlando, James L.; Drexler, Judith Z.

2017-07-07

The Liberty Island Conservation Bank (LICB) is a tidal freshwater marsh restored for the purpose of mitigating adverse effects on sensitive fish populations elsewhere in the region. The LICB was completed in 2012 and is in the northern Cache Slough region of the Sacramento–San Joaquin Delta. The wetland vegetation at the LICB is stunted and yellow-green in color (chlorotic) compared to nearby wetlands. A study was done to investigate three potential causes of the stunted and chlorotic vegetation: (1) improper grading of the marsh plain, (2) pesticide contamination from agricultural and urban inputs upstream from the site, (3) nitrogen-deficient soil, or some combination of these. Water samples were collected from channels at five sites, and soil samples were collected from four wetlands, including the LICB, during the summer of 2015. Real-time kinematic global positioning system (RTK-GPS) elevation surveys were completed at the LICB and north Little Holland Tract, a closely situated natural marsh that has similar hydrodynamics as the LICB, but contains healthy marsh vegetation.The results showed no significant differences in carbon or nitrogen content in the surface soils or in pesticides in water among the sites. The elevation survey indicated that the mean elevation of the LICB was about 26 centimeters higher than that of the north Little Holland Tract marsh. Because marsh plain elevation largely determines the hydroperiod of a marsh, these results indicated that the LICB has a hydroperiod that differs from that of neighboring north Little Holland Tract marsh. This difference in hydroperiod contributed to the lower stature and decreased vigor of wetland vegetation at the LICB. Although the LICB cannot be regraded without great expense, it could be possible to reduce the sharp angle of the marsh edge to facilitate deeper and more frequent tidal flooding along the marsh periphery. Establishing optimal elevations for restored wetlands is necessary for obtaining

Re-establishing marshes can return carbon sink functions to a current carbon source in the Sacramento-San Joaquin Delta of California, USA

Science.gov (United States)

Miller, Robin L.; Fujii, Roger; Schmidt, Paul E.

2011-01-01

The Sacramento-San Joaquin Delta in California was an historic, vast inland freshwater wetland, where organic soils almost 20 meters deep formed over the last several millennia as the land surface elevation of marshes kept pace with sea level rise. A system of levees and pumps were installed in the late 1800s and early 1900s to drain the land for agricultural use. Since then, land surface has subsided more than 7 meters below sea level in some areas as organic soils have been lost to aerobic decomposition. As land surface elevations decrease, costs for levee maintenance and repair increase, as do the risks of flooding. Wetland restoration can be a way to mitigate subsidence by re-creating the environment in which the organic soils developed. A preliminary study of the effect of hydrologic regime on carbon cycling conducted on Twitchell Island during the mid-1990s showed that continuous, shallow flooding allowing for the growth of emergent marsh vegetation re-created a wetland environment where carbon preservation occurred. Under these conditions annual plant biomass carbon inputs were high, and microbial decomposition was reduced. Based on this preliminary study, the U.S. Geological Survey re-established permanently flooded wetlands in fall 1997, with shallow water depths of 25 and 55 centimeters, to investigate the potential to reverse subsidence of delta islands by preserving and accumulating organic substrates over time. Ten years after flooding, elevation gains from organic matter accumulation in areas of emergent marsh vegetation ranged from almost 30 to 60 centimeters, with average annual carbon storage rates approximating 1 kg/m2, while areas without emergent vegetation cover showed no significant change in elevation. Differences in accretion rates within areas of emergent marsh vegetation appeared to result from temporal and spatial variability in hydrologic factors and decomposition rates in the wetlands rather than variability in primary production

Phytoplankton Regulation in a Eutrophic Tidal River (San Joaquin River, California

Directory of Open Access Journals (Sweden)

Alan D. Jassby

2005-03-01

Full Text Available As in many U.S. estuaries, the tidal San Joaquin River exhibits elevated organic matter production that interferes with beneficial uses of the river, including fish spawning and migration. High phytoplankton biomass in the tidal river is consequently a focus of management strategies. An unusually long and comprehensive monitoring dataset enabled identification of the determinants of phytoplankton biomass. Phytoplankton carrying capacity may be set by nitrogen or phosphorus during extreme drought years but, in most years, growth rate is light-limited. The size of the annual phytoplankton bloom depends primarily on river discharge during late spring and early summer, which determines the cumulative light exposure in transit downstream. The biomass-discharge relationship has shifted over the years, for reasons as yet unknown. Water diversions from the tidal San Joaquin River also affect residence time during passage downstream and may have resulted in more than a doubling of peak concentration in some years. Dam construction and accompanying changes in storage-and-release patterns from upstream reservoirs have caused a long-term decrease in the frequency of large blooms since the early 1980s, but projected climate change favors a future increase. Only large decreases in nonpoint nutrient sources will limit phytoplankton biomass reliably. Growth rate and concentration could increase if nonpoint source management decreases mineral suspensoid load but does not decrease nutrient load sufficiently. Small changes in water storage and release patterns due to dam operation have a major influence on peak phytoplankton biomass, and offer a near-term approach for management of nuisance algal blooms.

Greenhouse gas emissions and carbon sequestration potential in restored freshwater marshes in the Sacramento San-Joaquin Delta, California

Science.gov (United States)

Knox, S. H.; Sturtevant, C. S.; Oikawa, P. Y.; Matthes, J. H.; Dronova, I.; Anderson, F. E.; Verfaillie, J. G.; Baldocchi, D. D.

2015-12-01

Wetlands can be effective carbon sinks due to limited decomposition rates in anaerobic soil. As such there is a growing interest in the use of restored wetlands as biological carbon sequestration projects for greenhouse gas (GHG) emission reduction programs. However, using wetlands to offset emissions requires accurate accounting of both carbon dioxide (CO2) and methane (CH4) exchange since wetlands are also sources of CH4. To date few studies have quantified CO2 and CH4 exchange from restored wetlands or assessed how these fluxes vary during ecosystem development. In this study, we report on multiple years of eddy covariance measurements of CO2 and CH4 fluxes from two restored freshwater marshes of differing ages (one restored in 1997 and the other in 2010) in the Sacramento-San Joaquin Delta, CA. Measurements at the younger restored wetland started in October 2010 and began in April 2011 at the older site. The younger restored wetland showed considerable year-to-year variability in the first 4 years following restoration, with CO2 uptake ranging from 12 to 420 g C-CO2 m-2 yr-1. Net CO2 uptake at the older wetland was overall greater than at the younger site, ranging from 292 to 585 g C-CO2 m-2 yr-1. Methane emissions were on average higher at the younger wetland (46 g C-CH4 m-2 yr-1) relative to the older one (33 g C-CH4 m-2 yr-1). In terms of the GHG budgets (assuming a global warming potential of 34), the younger wetland was consistently a GHG source, emitting on average 1439 g CO2 eq m-2 yr-1, while the older wetland was a GHG sink in two of the years of measurement (sequestering 651 and 780 g CO2 eq m-2 yr-1 in 2012 and 2013, respectively) and a source of 750 g CO2 eq m-2 yr-1 in 2014. This study highlights how dynamic CO2 and CH4 fluxes are in the first years following wetland restoration and suggests that restored wetlands have the potential to act as GHG sinks but this may depend on time since restoration.

Dissolved Pesticide Concentrations Detected in Storm-Water Runoff at Selected Sites in the San Joaquin River Basin, California, 2000-2001

National Research Council Canada - National Science Library

Orlando, James L; Kuivila, Kathryn M; Whitehead, Andrew

2003-01-01

...) and the University of California Davis Bodega Marine Laboratory (BML) water samples were collected at three sites within the San Joaquin River Basin of California and analyzed for dissolved pesticides...

The State of Bay–Delta Science 2016: An Introduction

Directory of Open Access Journals (Sweden)

Michael Healey

2016-07-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2016v14iss2art5The State of Bay–Delta Science 2016 (SBDS is a collection of papers that summarizes the scientific understanding of the Sacramento–San Joaquin Delta, emphasizing progress made during the past decade.It builds on the first SBDS edition (Healey et al. 2008. Paper topics for this edition address the most relevant scientific issues in the Delta identified by senior scientists and managers. The topical papers cover issues ranging from contaminants in the Delta to levee stability, and from Delta food webs to recent discoveries about salmon migration. These papers are written for a scientific audience. Two additional papers, one describing the challenges of managing water and ecosystems in the Delta and another that discusses policy implications of the recent scientific findings, are written for a general audience. The papers will be published in at least two issues of San Francisco Estuary and Watershed Science and will be available as a set electronically.

Subsidence due to Excessive Groundwater Withdrawal in the San Joaquin Valley, California

Science.gov (United States)

Corbett, F.; Harter, T.; Sneed, M.

2011-12-01

Francis Corbett1, Thomas Harter1 and Michelle Sneed2 1Department of Land Air and Water Resources, University of California, Davis. 2U.S. Geological Survey Western Remote Sensing and Visualization Center, Sacramento. Abstract: Groundwater development within the Central Valley of California began approximately a century ago. Water was needed to supplement limited surface water supplies for the burgeoning population and agricultural industries, especially within the arid but fertile San Joaquin Valley. Groundwater levels have recovered only partially during wet years from drought-induced lows creating long-term groundwater storage overdraft. Surface water deliveries from Federal and State sources led to a partial alleviation of these pressure head declines from the late 1960s. However, in recent decades, surface water deliveries have declined owing to increasing environmental pressures, whilst water demands have remained steady. Today, a large portion of the San Joaquin Valley population, and especially agriculture, rely upon groundwater. Groundwater levels are again rapidly declining except in wet years. There is significant concern that subsidence due to groundwater withdrawal, first observed at a large scale in the middle 20th century, will resume as groundwater resources continue to be depleted. Previous subsidence has led to problems such as infrastructure damage and flooding. To provide a support tool for groundwater management on a naval air station in the southern San Joaquin Valley (Tulare Lake Basin), a one-dimensional MODFLOW subsidence model covering the period 1925 to 2010 was developed incorporating extensive reconstruction of historical subsidence and water level data from various sources. The stratigraphy used for model input was interpreted from geophysical logs and well completion reports. Gaining good quality data proved problematic, and often values needed to be estimated. In part, this was due to the historical lack of awareness/understanding of

77 FR 745 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-01-06

... ENVIRONMENTAL PROTECTION AGENCY 40 CFR Part 52 [EPA-R09-OAR-2011-0547; FRL-9480-1] Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) Correction In rule document 2011-33660 appearing on pages 214-217 in the issue of Wednesday, January 4, 2012, make the following corrections...

Understanding Particulate Matter Dynamics in the San Joaquin Valley during DISCOVER-AQ, 2013

Science.gov (United States)

Prabhakar, G.; Zhang, X.; Kim, H.; Parworth, C.; Pusede, S. E.; Wooldridge, P. J.; Cohen, R. C.; Zhang, Q.; Cappa, C. D.

2015-12-01

Air quality in the California San Joaquin Valley (SJV) during winter continues to be the worst in the state, failing EPA's 24-hour standard for particulate matter. Despite our improved understanding of the sources of particulate matter (PM) in the valley, air-quality models are unable to predict PM concentrations accurately. We aim to characterize periods of high particulate matter concentrations in the San Joaquin Valley based on ground and airborne measurements of aerosols and gaseous pollutants, during the DISCOVER-AQ campaign, 2013. A highly instrumented aircraft flew across the SJV making three transects in a repeatable pattern, with vertical spirals over select locations. The aircraft measurements were complemented by ground measurements at these locations, with extensive chemically-speciated measurements at a ground "supersite" at Fresno. Hence, the campaign provided a comprehensive three-dimensional view of the particulate and gaseous pollutants around the valley. The vertical profiles over the different sites indicate significant variability in the concentrations and vertical distribution of PM around the valley, which are most likely driven by differences in the combined effects of emissions, chemistry and boundary layer dynamics at each site. The observations suggest that nighttime PM is dominated by surface emissions of PM from residential fuel combustion, while early morning PM is strongly influenced by mixing of low-level, above-surface, nitrate-rich layers formed from dark chemistry overnight to the surface.

Analysis of the Causes of a Decline in the San Joaquin Kit Fox Population on the Elk Hills, Naval Petroleum Reserve #1, California

Science.gov (United States)

EPA is announcing the availability of the final report, Analysis of the Causes of a Decline in the San Joaquin Kit Fox Population on the Elk Hills, Naval Petroleum Reserve #1, California. This report describes a causal assessment of the decline in the abundance of San Joaq...

Isotopic and Chemical Analysis of Nitrate Sources and Cycling in the San Joaquin River Near Stockton, California

Science.gov (United States)

Silva, S. R.; Kendall, C.; Bemis, B.; Wankel, S.; Bergamaschi, B.; Kratzer, C.; Dileanis, P.; Erickson, D.; Avery, E.; Paxton, K.

2002-12-01

Fish migration through the deep-water channel in the San Joaquin River at Stockton, California is inhibited by low oxygen concentrations during the summer months. The cause for this condition appears to be stagnation and decomposition of algae with attendant oxygen consumption. Algae growth in the San Joaquin River is promoted by nutrients entering the river mainly in the form of nitrate. Possible significant sources of nitrate include soil, fertilizer from agriculture, manure from dairy operations, and N derived from municipal sewage. A 2000 CALFED pilot study investigated the sources and cycling of nitrate at four sites along the San Joaquin River upstream of Stockton using the carbon and nitrogen isotopes of total dissolved and particulate organic matter, together with hydrological measurements and various concentration data, including chlorophyll-a. The nitrate source, its relationship to phytoplankton, and the effect of the nitrate source and cycling on the N isotopic composition of dissolved and particulate organic matter were the primary concerns of the study. The d15N values of dissolved organic nitrogen (DON) were used as a proxy for nitrate d15N because nitrate comprised about 90% of DON. Chlorophyll-a and C:N ratios indicated that the particulate organic matter (POM) consisted largely of plankton and therefore the d15N of POM was used as a proxy for the d15N of plankton. A tentative interpretation of the pilot study was that nitrate was a major nutrient for the plankton and the nitrate was of anthropogenic origin, possibly sewage or animal waste. To test these assumptions and interpretations, we are currently analyzing a set of samples collected in 2001. In addition to the previous sample types, a subset of samples will be measured directly for nitrate d15N to assess the validity of using d15N of DON as a proxy for nitrate.

75 FR 71145 - San Joaquin River Restoration Program: Reach 4B, Eastside Bypass, and Mariposa Bypass Channel and...

Science.gov (United States)

2010-11-22

..., Eastside Bypass, and Mariposa Bypass Channel and Structural Improvements Project, Merced County, CA AGENCY... on the effects of the proposed Reach 4B, Eastside Bypass, and Mariposa Bypass Channel and Structural... Mariposa Bypass with the San Joaquin River (generally referred to as Reach 4B1). The improvements will...

Proposed Approval of California Air Plan Revision; San Joaquin Valley Unified Air Pollution Control District; Reasonably Available Control Technology Demonstration

Science.gov (United States)

EPA isproposing to approve revisions to the SJVUAPCD portion of the California SIP applying to the San Joaquin Valley of California concerning demonstration regarding RACT requirements for the 2008 8-hour ozone National Ambient Air Quality Standard (NAAQS)

77 FR 66548 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-11-06

...EPA is approving revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California State Implementation Plan (SIP). This action was proposed in the Federal Register on April 26, 2012 and concerns oxides of nitrogen (NOX) from solid fuel fired boilers. We are approving a local rule that regulates these emission sources under the Clean Air Act (CAA or the Act).

Data release for persistence of historical population structure in an endangered species despite near-complete biome conversion in California’s San Joaquin Desert

Data.gov (United States)

Department of the Interior — The recency of large-scale land conversion in California’s San Joaquin Desert raises the probability that the region’s numerous endemic species still retain genetic...

75 FR 24408 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2010-05-05

...EPA is finalizing approval of revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVAPCD) portion of the California State Implementation Plan (SIP). These revisions were proposed in the Federal Register on January 22, 2010 and concern oxides of nitrogen (NOx) emissions from residential water heaters. We are approving a local rule that regulates this emission source under the Clean Air Act as amended in 1990 (CAA or the Act).

Groundwater quality in the Madera and Chowchilla subbasins of the San Joaquin Valley, California

Science.gov (United States)

Shelton, Jennifer L.; Fram, Miranda S.; Belitz, Kenneth

2013-01-01

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s untreated groundwater quality and increases public access to groundwater-quality information. The Madera and Chowchilla subbasins of the San Joaquin Valley constitute one of the study units being evaluated. The Madera-Chowchilla study unit is about 860 square miles and consists of the Madera and Chowchilla groundwater subbasins of the San Joaquin Valley Basin (California Department of Water Resources, 2003; Shelton and others, 2009). The study unit has hot, dry summers and cool, moist winters. Average annual rainfall ranges from 11 to 15 inches, most of which occurs between November and February. The main surface-water features in the study unit are the San Joaquin, Fresno, and Chowchilla Rivers, and the Madera and Chowchilla canals. Land use in the study unit is about 69 percent (%) agricultural, 28% natural (mainly grasslands), and 3% urban. The primary crops are orchards and vineyards. The largest urban area is the city of Madera. The primary aquifer system is defined as those parts of the aquifer corresponding to the perforated intervals of wells listed in the California Department of Public Health (CDPH) database. In the Madera-Chowchilla study unit, these wells typically are drilled to depths between 200 and 800 feet, consist of a solid casing from land surface to a depth of about 140 to 400 feet, and are perforated below the solid casing. Water quality in the primary aquifer system may differ from that in the shallower and deeper parts of the aquifer system. The primary aquifer system in the study unit consists of Quaternary-age alluvial-fan and fluvial deposits that were formed by the rivers draining the Sierra Nevada. Sediments consist of gravels, sands

Technical Analysis of In-Valley Drainage Management Strategies for the Western San Joaquin Valley, California

Science.gov (United States)

Presser, Theresa S.; Schwarzbach, Steven E.

2008-01-01

The western San Joaquin Valley is one of the most productive farming areas in the United States, but salt-buildup in soils and shallow groundwater aquifers threatens this area?s productivity. Elevated selenium concentrations in soils and groundwater complicate drainage management and salt disposal. In this document, we evaluate constraints on drainage management and implications of various approaches to management considered in: *the San Luis Drainage Feature Re-Evaluation (SLDFRE) Environmental Impact Statement (EIS) (about 5,000 pages of documentation, including supporting technical reports and appendices); *recent conceptual plans put forward by the San Luis Unit (SLU) contractors (i.e., the SLU Plans) (about 6 pages of documentation); *approaches recommended by the San Joaquin Valley Drainage Program (SJVDP) (1990a); and *other U.S. Geological Survey (USGS) models and analysis relevant to the western San Joaquin Valley. The alternatives developed in the SLDFRE EIS and other recently proposed drainage plans (refer to appendix A for details) differ from the strategies proposed by the San Joaquin Valley Drainage Program (1990a). The Bureau of Reclamation (USBR) in March 2007 signed a record of decision for an in-valley disposal option that would retire 194,000 acres of land, build 1,900 acres of evaporation ponds, and develop a treatment system to remove salt and selenium from drainwater. The recently proposed SLU Plans emphasize pumping drainage to the surface, storing approximately 33% in agricultural water re-use areas, treating selenium through biotechnology, enhancing the evaporation of water to concentrate salt, and identifying ultimate storage facilities for the remaining approximately 67% of waste selenium and salt. The treatment sequence of reuse, reverse osmosis, selenium bio-treatment, and enhanced solar evaporation is unprecedented and untested at the scale needed to meet plan requirements. All drainage management strategies that have been proposed

Analysis of Salinity Intrusion in the San Francisco Bay-Delta Using a GA-Optimized Neural Net, and Application of the Model to Prediction in the Elkhorn Slough Habitat

Science.gov (United States)

Thompson, D. E.; Rajkumar, T.

2002-12-01

The San Francisco Bay Delta is a large hydrodynamic complex that incorporates the Sacramento and San Joaquin Estuaries, the Suisan Marsh, and the San Francisco Bay proper. Competition exists for the use of this extensive water system both from the fisheries industry, the agricultural industry, and from the marine and estuarine animal species within the Delta. As tidal fluctuations occur, more saline water pushes upstream allowing fish to migrate beyond the Suisan Marsh for breeding and habitat occupation. However, the agriculture industry does not want extensive salinity intrusion to impact water quality for human and plant consumption. The balance is regulated by pumping stations located along the estuaries and reservoirs whereby flushing of fresh water keeps the saline intrusion at bay. The pumping schedule is driven by data collected at various locations within the Bay Delta and by numerical models that predict the salinity intrusion as part of a larger model of the system. The Interagency Ecological Program (IEP) for the San Francisco Bay / Sacramento-San Joaquin Estuary collects, monitors, and archives the data, and the Department of Water Resources provides a numerical model simulation (DSM2) from which predictions are made that drive the pumping schedule. A problem with DSM2 is that the numerical simulation takes roughly 16 hours to complete a prediction. We have created a neural net, optimized with a genetic algorithm, that takes as input the archived data from multiple gauging stations and predicts stage, salinity, and flow at the Carquinez Straits (at the downstream end of the Suisan Marsh). This model seems to be robust in its predictions and operates much faster than the current numerical DSM2 model. Because the Bay-Delta is strongly tidally driven, we used both Principal Component Analysis and Fast Fourier Transforms to discover dominant features within the IEP data. We then filtered out the dominant tidal forcing to discover non-primary tidal effects

77 FR 24857 - Interim Final Determination To Stay and Defer Sanctions, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-04-26

...EPA is making an interim final determination to stay the imposition of offset sanctions and to defer the imposition of highway sanctions based on a proposed approval of revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California State Implementation Plan (SIP) published elsewhere in this Federal Register. The revisions concern SJVUAPCD Rule 4352, Solid Fuel Fired Boilers, Steam Generators and Process Heaters.

77 FR 35327 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-06-13

...EPA is proposing to approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California State Implementation Plan (SIP). These revisions concern volatile organic compound (VOC) emissions from the manufacture of polystyrene, polyethylene, and polypropylene products. We are approving a local rule that regulates these emission sources under the Clean Air Act (CAA or the Act). We are taking comments on this proposal and plan to follow with a final action.

Status and understanding of groundwater quality in the northern San Joaquin Basin, 2005

Science.gov (United States)

Bennett, George L.; Fram, Miranda S.; Belitz, Kenneth; Jurgens, Bryant C.

2010-01-01

Groundwater quality in the 2,079 square mile Northern San Joaquin Basin (Northern San Joaquin) study unit was investigated from December 2004 through February 2005 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Project was developed in response to the Groundwater Quality Monitoring Act of 2001 that was passed by the State of California and is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey and the Lawrence Livermore National Laboratory. The Northern San Joaquin study unit was the third study unit to be designed and sampled as part of the Priority Basin Project. Results of the study provide a spatially unbiased assessment of the quality of raw (untreated) groundwater, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 61 wells in parts of Alameda, Amador, Calaveras, Contra Costa, San Joaquin, and Stanislaus Counties; 51 of the wells were selected using a spatially distributed, randomized grid-based approach to provide statistical representation of the study area (grid wells), and 10 of the wells were sampled to increase spatial density and provide additional information for the evaluation of water chemistry in the study unit (understanding/flowpath wells). The primary aquifer systems (hereinafter, primary aquifers) assessed in this study are defined by the depth intervals of the wells in the California Department of Public Health database for each study unit. The quality of groundwater in shallow or deep water-bearing zones may differ from quality of groundwater in the primary aquifers; shallow groundwater may be more vulnerable to contamination from the surface. Two types of assessments were made: (1) status, assessment of the current quality of the groundwater resource; and (2) understanding, identification of the natural and human factors

75 FR 10690 - Revisions to the California State Implementation Plan, San Joaquin Valley Air Pollution Control...

Science.gov (United States)

2010-03-09

...EPA is finalizing approval of revisions to the San Joaquin Valley Air Pollution Control District (SJVAPCD) portion of the California State Implementation Plan (SIP). These revisions were proposed in the Federal Register on December 18, 2009 and concern reduction of animal matter and volatile organic compound (VOC) emissions from crude oil production, cutback asphalt, and petroleum solvent dry cleaning. We are approving local rules that regulate these emission sources under the Clean Air Act as amended in 1990 (CAA or the Act).

77 FR 24883 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-04-26

...EPA is proposing to approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California State Implementation Plan (SIP). These revisions concern oxides of nitrogen (NOX) from solid fuel fired boilers, steam generators and process heaters. We are approving a local rule that regulates these emission sources under the Clean Air Act as amended in 1990 (CAA or the Act). We are taking comments on this proposal and plan to follow with a final action.

77 FR 35329 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-06-13

...EPA is proposing to approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California State Implementation Plan (SIP). These revisions concern volatile organic compound (VOC) emissions from crude oil production sumps and refinery wastewater separators. We are approving local rules that regulate these emission sources under the Clean Air Act as amended in 1990 (CAA or the Act). We are taking comments on this proposal and plan to follow with a final action.

77 FR 66429 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2012-11-05

...EPA is proposing to approve revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVUAPCD) portion of the California State Implementation Plan (SIP). These revisions concern volatile organic compounds (VOC), carbon monoxide (CO), oxides of nitrogen (NOX), oxides of sulfur (SOX), and particulate matter (PM) emissions from glass melting furnaces. We are approving a local rule that regulates these emission sources under the Clean Air Act (CAA or the Act). We are taking comments on this proposal and plan to follow with a final action.

Effects of the proposed California WaterFix North Delta Diversion on survival of juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta, northern California

Science.gov (United States)

Perry, Russell W.; Pope, Adam C.

2018-05-11

The California Department of Water Resources and Bureau of Reclamation propose new water intake facilities on the Sacramento River in northern California that would convey some of the water for export to areas south of the Sacramento-San Joaquin River Delta (hereinafter referred to as the Delta) through tunnels rather than through the Delta. The collection of water intakes, tunnels, pumping facilities, associated structures, and proposed operations are collectively referred to as California WaterFix. The water intake facilities, hereinafter referred to as the North Delta Diversion (NDD), are proposed to be located on the Sacramento River downstream of the city of Sacramento and upstream of the first major river junction where Sutter Slough branches from the Sacramento River. The NDD can divert a maximum discharge of 9,000 cubic feet per second (ft3 /s) from the Sacramento River, which reduces the amount of Sacramento River inflow into the Delta. In this report, we conduct four analyses to investigate the effect of the NDD and its proposed operation on survival of juvenile Chinook salmon (Oncorhynchus tshawytscha). All analyses used the results of a Bayesian survival model that allowed us to simulate travel time, migration routing, and survival of juvenile Chinook salmon migrating through the Delta in response to NDD operations, which affected both inflows to the Delta and operation of the Delta Cross Channel (DCC). For the first analysis, we evaluated the effect of the NDD bypass rules on salmon survival. The NDD bypass rules are a set of operational rule curves designed to provide adaptive levels of fish protection by defining allowable diversion rates as a function of (1) Sacramento River discharge as measured at Freeport, and (2) time of year when endangered runs requiring the most protection are present. We determined that all bypass rule curves except constant low-level pumping (maximum diversion of 900 ft3 /s) could cause a sizeable decrease in survival by as

Groundwater quality in the shallow aquifers of the Madera–Chowchilla and Kings subbasins, San Joaquin Valley, California

Science.gov (United States)

Fram, Miranda S.; Shelton, Jennifer L.

2018-01-08

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Program’s Priority Basin Project assesses the quality of groundwater resources used for drinking-water supply and increases public access to groundwater-quality information. Many households and small communities in the Madera– Chowchilla and Kings subbasins of the San Joaquin Valley rely on private domestic wells for their drinking-water supplies.

75 FR 2796 - Revisions to the California State Implementation Plan, San Joaquin Valley Air Pollution Control...

Science.gov (United States)

2010-01-19

...EPA is finalizing approval of revisions to the San Joaquin Valley Air Pollution Control District portion of the California State Implementation Plan (SIP). These revisions were proposed in the Federal Register on June 16, 2009 and concern volatile organic compound (VOC) emissions from coating of metal parts, large appliances, metal furniture, motor vehicles, mobile equipment, cans, coils, organic solvent cleaning, and storage and disposal related to such operations. We are approving local rules that regulate these emission sources under the Clean Air Act as amended in 1990 (CAA or the Act).

76 FR 16696 - Revisions to the California State Implementation Plan, San Joaquin Valley Unified Air Pollution...

Science.gov (United States)

2011-03-25

...EPA is finalizing approval of revisions to the San Joaquin Valley Unified Air Pollution Control District (SJVAPCD) portion of the California State Implementation Plan (SIP). These revisions were proposed in the Federal Register on November 5, 2010 and concern oxides of nitrogen (NOX), carbon monoxide (CO), oxides of sulfur (SO2) and particulate matter emissions from boilers, steam generators and process heaters greater than 5.0 MMbtu/hour. We are approving a local rule that regulates these emission sources under the Clean Air Act as amended in 1990 (CAA or the Act).

Crecimiento y propiedades fisico-mecanicas de la madera de teca (Tectona grandis de 17 anos de edad en San Joaquin de Abangares, Costa Rica

Directory of Open Access Journals (Sweden)

Fernando Castro

2000-01-01

Full Text Available Growth and physical-mechanical properties of 17 years old teak (Tectona grandis growing in San Joaquin, Abangares, Costa Rica. The national and international market of forest products, from certifieddad. managment forests and plantations, is increasingly more demanding as to the standards and characteristics of high quality. The physicalmecanicas mechanical properties of the teak (Tectona grandis, growing in San Joaqufn de Abangares, Costa Rica, at 30 m and 100 16´ north latitude, are determined according to the ASTM standard Destudiadas 143-83. The physical properties of teak timber studied were: basic specific weight, radial, tangential and volumetric contractions, contraction ratio, dry and green density and point of fiber saturation. The mechanical properties studied were: static flexure, shear, hardness, parallel and perpendicular compression. Also included were comparisons with teak timber harvested in other places and latitudes, as well as other hardwood species. The coefficient of variation of the basic specific weight of the San Joaquin de Abangares teak (3.4% is half that of the Quepos teak (7% and almost one third of the average of 50 species (10%, which is an...

Sensitivity of agricultural runoff loads to rising levels of CO2 and climate change in the San Joaquin Valley watershed of California

International Nuclear Information System (INIS)

Ficklin, Darren L.; Luo Yuzhou; Luedeling, Eike; Gatzke, Sarah E.; Zhang Minghua

2010-01-01

The Soil and Water Assessment Tool (SWAT) was used to assess the impact of climate change on sediment, nitrate, phosphorus and pesticide (diazinon and chlorpyrifos) runoff in the San Joaquin watershed in California. This study used modeling techniques that include variations of CO 2 , temperature, and precipitation to quantify these responses. Precipitation had a greater impact on agricultural runoff compared to changes in either CO 2 concentration or temperature. Increase of precipitation by ±10% and ±20% generally changed agricultural runoff proportionally. Solely increasing CO 2 concentration resulted in an increase in nitrate, phosphorus, and chlorpyrifos yield by 4.2, 7.8, and 6.4%, respectively, and a decrease in sediment and diazinon yield by 6.3 and 5.3%, respectively, in comparison to the present-day reference scenario. Only increasing temperature reduced yields of all agricultural runoff components. The results suggest that agricultural runoff in the San Joaquin watershed is sensitive to precipitation, temperature, and CO 2 concentration changes. - Agricultural runoff is significantly affected by changes in precipitation, temperature, and atmospheric CO 2 concentration.

An Introduction to the San Francisco Estuary Tidal Wetlands Restoration Series

Directory of Open Access Journals (Sweden)

Larry R. Brown

2003-10-01

Full Text Available Restoration of tidal wetlands may provide an important tool for improving ecological health and water management for beneficial uses of the San Francisco Estuary (hereafter “Estuary”. Given the large losses of tidal wetlands from San Francisco Bay and the Sacramento-San Joaquin Delta in the last 150 years, it seems logical to assume that restoring tidal wetlands will have benefits for a variety of aquatic and terrestrial native species that have declined during the same time period. However, many other changes have also occurred in the Estuary concurrent with the declines of native species. Other factors that might be important in species declines include the effects of construction of upstream dams, large and small water diversions within the Sacramento-San Joaquin Delta, agricultural pesticides, trace elements from industrial and agricultural activities, and invasions of alien species. Discussions among researchers, managers, and stakeholders have identified a number of uncertainties regarding the potential benefits of tidal wetland restoration. The articles of the Tidal Wetlands Restoration Series address four major issues of concern. Stated as questions, these are: 1. Will tidal wetland restoration enhance populations of native fishes? 2. Will wetland restoration increase rates of methylation of mercury? 3. Will primary production and other ecological processes in restored tidal wetlands result in net export of organic carbon to adjacent habitats, resulting in enhancement of the food web? Will the carbon produced contribute to the formation of disinfection byproducts when disinfected for use as drinking water? 4. Will restored tidal wetlands provide long-term ecosystem benefits that can be sustained in response to ongoing physical processes, including sedimentation and hydrodynamics? Reducing the uncertainty surrounding these issues is of critical importance because tidal wetland restoration is assumed to be a critical tool for

Late Holocene forest dynamics, volcanism, and climate change at Whitewing Mountain and San Joaquin Ridge, Mono County, Sierra Nevada, CA, USA

Science.gov (United States)

Constance I. Millar; John C. King; Robert D. Westfall; Harry A. Alden; Diane L. Delany

2006-01-01

Deadwood tree stems scattered above treeline on tephra-covered slopes of Whitewing Mtn (3051 m) and San Joaquin Ridge (3122 m) show evidence of being killed in an eruption from adjacent Glass Creek Vent, Inyo Craters. Using tree-ring methods, we dated deadwood to AD 815-1350 and infer from death dates that the eruption occurred in late summer AD 1350. Based on wood...

Sensitivity of agricultural runoff loads to rising levels of CO{sub 2} and climate change in the San Joaquin Valley watershed of California

Energy Technology Data Exchange (ETDEWEB)

Ficklin, Darren L.; Luo Yuzhou; Luedeling, Eike; Gatzke, Sarah E. [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States); Zhang Minghua, E-mail: mhzhang@ucdavis.ed [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States)

2010-01-15

The Soil and Water Assessment Tool (SWAT) was used to assess the impact of climate change on sediment, nitrate, phosphorus and pesticide (diazinon and chlorpyrifos) runoff in the San Joaquin watershed in California. This study used modeling techniques that include variations of CO{sub 2}, temperature, and precipitation to quantify these responses. Precipitation had a greater impact on agricultural runoff compared to changes in either CO{sub 2} concentration or temperature. Increase of precipitation by +-10% and +-20% generally changed agricultural runoff proportionally. Solely increasing CO{sub 2} concentration resulted in an increase in nitrate, phosphorus, and chlorpyrifos yield by 4.2, 7.8, and 6.4%, respectively, and a decrease in sediment and diazinon yield by 6.3 and 5.3%, respectively, in comparison to the present-day reference scenario. Only increasing temperature reduced yields of all agricultural runoff components. The results suggest that agricultural runoff in the San Joaquin watershed is sensitive to precipitation, temperature, and CO{sub 2} concentration changes. - Agricultural runoff is significantly affected by changes in precipitation, temperature, and atmospheric CO{sub 2} concentration.

The Role of Tidal Marsh Restoration in Fish Management in the San Francisco Estuary

Directory of Open Access Journals (Sweden)

Bruce Herbold

2014-03-01

Full Text Available   Tidal marsh restoration is an important management issue in the San Francisco Estuary (estuary. Restoration of large areas of tidal marsh is ongoing or planned in the lower estuary (up to 6,000 ha, Callaway et al. 2011. Large areas are proposed for restoration in the upper estuary under the Endangered Species Act biological opinions (3,237 ha and the Bay Delta Conservation Plan (26,305 ha. In the lower estuary, tidal marsh has proven its value to a wide array of species that live within it (Palaima 2012. In the Sacramento–San Joaquin Delta (Delta, one important function ascribed to restoration of freshwater tidal marshes is that they make large contributions to the food web of fish in open waters (BDCP 2013. The Ecosystem Restoration Program ascribed a suite of ecological functions to tidal marsh restoration, including habitat and food web benefits to native fish (CDFW 2010. This background was the basis for a symposium, Tidal Marshes and Native Fishes in the Delta: Will Restoration Make a Difference? held at the University of California, Davis, on June 10, 2013. This paper summarizes conclusions the authors drew from the symposium. 

Striped bass (Morone saxatilis) monitoring techniques in the Sacramento--San Joaquin Estuary

International Nuclear Information System (INIS)

Stevens, D.E.

1977-01-01

Various methods have been used to monitor the striped bass population in the Sacramento--San Joaquin Estuary. Sampling in the spring with towed plankton nets has provided an adequate description of spawning time and area, but this sampling has not adequately measured egg standing crops and larva and post-larva mortality rates. Tow-net sampling effectively measures the abundance of young in midsummer. A midwater-trawl survey is satisfactory for measuring the abundance of young in the fall but not in the winter. Techniques have not been fully evaluated for monitoring one-year-old bass. Catch-per-unit-effort data from sportfishing party boats were useful for monitoring two-year-olds, until a change in angling regulations increased recruitment age. The Petersen method and indices developed from party-boat catches are the best methods for monitoring bass that are three years old and older. Long-term trends in catch can be monitored through postcard surveys and party-boat catches

Collaboration, Participation and Technology: The San Joaquin Valley Cumulative Health Impacts Project

Directory of Open Access Journals (Sweden)

Jonathan K. London

2011-11-01

Full Text Available Community-university partnerships have been shown to produce significant value for both sets of partners by providing reciprocal learning opportunities, (rebuilding bonds of trust, and creating unique venues to formulate and apply research that responds to community interests and informs collaborative solutions to community problems. For such partnerships to be mutually empowering, certain design characteristics are necessary. These include mutual respect for different modes and expressions of knowledge, capacity-building for all parties, and an environment that promotes honest and constructive dialogue about the inevitable tensions associated with the interplay of power/knowledge. This article explores an innovative case of community-university partnerships through participatory action research involving a coalition of environmental justice and health advocates, the San Joaquin Valley Cumulative Health Impacts Project, and researchers affiliated with the University of California, Davis. In particular, we examine how participatory GIS and community mapping can promote co-learning and interdependent science. Keywords Community-based participatory research, environmental justice, Public Participation Geographic Information System

Combined use of stable isotopes and hydrologic modeling to better understand nutrient sources and cycling in highly altered systems (Invited)

Science.gov (United States)

Young, M. B.; Kendall, C.; Guerin, M.; Stringfellow, W. T.; Silva, S. R.; Harter, T.; Parker, A.

2013-12-01

The Sacramento and San Joaquin Rivers provide the majority of freshwater for the San Francisco Bay Delta. Both rivers are important sources of drinking and irrigation water for California, and play critical roles in the health of California fisheries. Understanding the factors controlling water quality and primary productivity in these rivers and the Delta is essential for making sound economic and environmental water management decisions. However, these highly altered surface water systems present many challenges for water quality monitoring studies due to factors such as multiple potential nutrient and contaminant inputs, dynamic source water inputs, and changing flow regimes controlled by both natural and engineered conditions. The watersheds for both rivers contain areas of intensive agriculture along with many other land uses, and the Sacramento River receives significant amounts of treated wastewater from the large population around the City of Sacramento. We have used a multi-isotope approach combined with mass balance and hydrodynamic modeling in order to better understand the dominant nutrient sources for each of these rivers, and to track nutrient sources and cycling within the complex Delta region around the confluence of the rivers. High nitrate concentrations within the San Joaquin River fuel summer algal blooms, contributing to low dissolved oxygen conditions. High δ15N-NO3 values combined with the high nitrate concentrations suggest that animal manure is a significant source of nitrate to the San Joaquin River. In contrast, the Sacramento River has lower nitrate concentrations but elevated ammonium concentrations from wastewater discharge. Downstream nitrification of the ammonium can be clearly traced using δ15N-NH4. Flow conditions for these rivers and the Delta have strong seasonal and inter-annual variations, resulting in significant changes in nutrient delivery and cycling. Isotopic measurements and estimates of source water contributions

Assessing the sources and magnitude of diurnal nitrate variability in the San Joaquin River (California) with an in situ optical nitrate sensor and dual nitrate isotopes

Science.gov (United States)

Pellerin, Brian A.; Downing, Bryan D.; Kendall, Carol; Dahlgren, Randy A.; Kraus, Tamara E.C.; Saraceno, John Franco; Spencer, Robert G. M.; Bergamaschi, Brian A.

2009-01-01

1. We investigated diurnal nitrate (NO3−) concentration variability in the San Joaquin River using an in situ optical NO3− sensor and discrete sampling during a 5‐day summer period characterized by high algal productivity. Dual NO3− isotopes (δ15NNO3 and δ18ONO3) and dissolved oxygen isotopes (δ18ODO) were measured over 2 days to assess NO3− sources and biogeochemical controls over diurnal time‐scales.2. Concerted temporal patterns of dissolved oxygen (DO) concentrations and δ18ODOwere consistent with photosynthesis, respiration and atmospheric O2 exchange, providing evidence of diurnal biological processes independent of river discharge.3. Surface water NO3− concentrations varied by up to 22% over a single diurnal cycle and up to 31% over the 5‐day study, but did not reveal concerted diurnal patterns at a frequency comparable to DO concentrations. The decoupling of δ15NNO3 and δ18ONO3isotopes suggests that algal assimilation and denitrification are not major processes controlling diurnal NO3− variability in the San Joaquin River during the study. The lack of a clear explanation for NO3− variability likely reflects a combination of riverine biological processes and time‐varying physical transport of NO3− from upstream agricultural drains to the mainstem San Joaquin River.4. The application of an in situ optical NO3− sensor along with discrete samples provides a view into the fine temporal structure of hydrochemical data and may allow for greater accuracy in pollution assessment.

Sediment transport of streams tributary to San Francisco, San Pablo, and Suisun Bays, California, 1909-66

Science.gov (United States)

Porterfield, George

1980-01-01

A review of historical sedimentation data is presented, results of sediment-data collection for water years 1957-59 are summarized, and long-term sediment-discharge estimates from a preliminary report are updated. Comparison of results based on 3 years of data to those for the 10 water years, 1957-66, provides an indication of the adequacy of the data obtained during the short period to define the long-term relation between sediment transport and streamflow. During 1909-66, sediment was transported to the entire San Francisco Bay system at an average rate of 8.6 million cubic yards per year. The Sacramento and San Joaquin River basins provided about 83% of the sediment inflow to the system annually during 1957-66 and 86% during 1909-66. About 98% of this inflow was measured or estimated at sediment measuring sites. Measured sediment inflow directly to the bays comprised only about 40% of the total discharged by basins directly tributary to the bays. About 90% of the total sediment discharge to the delta and the bays in the San Francisco Bay system thus was determined on the basis of systematic measurements. (USGS)

Sediment budgets, transport, and depositional trends in a large tidal delta

Science.gov (United States)

Morgan, Tara; Wright, Scott A.

2016-01-01

The Sacramento-San Joaquin Delta is the largest delta on the west coast of the United States. It is formed where the confluence of California’s two largest rivers (the Sacramento and San Joaquin) meet the ocean tides and has a significant physical gradient from fluvial to tidal. It is a semidiurnal system (two high and two low tides per day). Today, the Delta is one of the most manipulated in the United States. Once composed of many shallow, meandering and braided dendritic channels and dead-end sloughs and wetlands, it is now a network of leveed canals moving clear water around subsided islands. It historically has supported a biologically diverse tidal wetland complex, of which only 3% remains today (Whipple et al., 2012). It has also witnessed a collapse in the native fish populations. The Delta provides critical habitat for native species, however the hydrology and water quality are complicated by manipulations and diversions to satisfy multiple statewide objectives. Today water managers face co-equal goals of water supply to Californians and maintenance of ecosystem health and function. The Delta is a hub for both a multi-hundred-million dollar agricultural industry and a massive north-to-south water delivery system, supplying the primary source of freshwater to Central Valley farmers and drinking water for two-thirds of California’s population. Large pump facilities support the water demand and draw water from the Delta, further altering circulation patterns and redirecting the net flow toward the export facilities (Monsen et al., 2007). Fluvial sedimentation, along with organic accumulation, creates and sustains the Delta landscape. Hydraulic mining for gold in the watershed during the late 1800s delivered an especially large sediment pulse to the Delta. More recently, from 1955 to the present, a significant sediment decline has been observed that is thought to have been caused mostly by the construction of water storage reservoirs that trap the upstream

Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert

Science.gov (United States)

Richmond, Jonathan Q.; Wood, Dustin A.; Westphal, Michael F.; Vandergast, Amy; Leache, Adam D.; Saslaw, Lawrence; Butterfield, H. Scott; Fisher, Robert N.

2017-01-01

Genomic responses to habitat conversion can be rapid, providing wildlife managers with time-limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near-complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive genetic data sets are lacking for nearly all species in the region. To fill this knowledge gap, we studied the rangewide population structure of the endangered blunt-nosed leopard lizard Gambelia sila, a San Joaquin Desert endemic, using restriction site-associated DNA (RAD), microsatellite and mtDNA data to test whether admixture patterns and estimates of effective migration surfaces (EEMS) can identify land areas with high population connectivity prior to the conversion of native xeric habitats. Clustering and phylogenetic analyses indicate a recent shared history between numerous isolated populations and EEMS reveals latent signals of corridors and barriers to gene flow over areas now replaced by agriculture and urbanization. Conflicting histories between the mtDNA and nuclear genomes are consistent with hybridization with the sister species G. wislizenii, raising important questions about where legal protection should end at the southern range limit of G. sila. Comparative analysis of different data sets also adds to a growing list of advantages in using RAD loci for genetic studies of rare species. We demonstrate how the results of this work can serve as an evolutionary guidance tool for managing endemic, arid-adapted taxa in one of the world's most compromised landscapes.

Evaluating a Radar-Based, Non Contact Streamflow Measurement System in the San Joaquin River at Vernalis, California

Science.gov (United States)

Cheng, Ralph T.; Gartner, Jeffrey W.; Mason, Jr., Robert R.; Costa, John E.; Plant, William J.; Spicer, Kurt R.; Haeni, F. Peter; Melcher, Nick B.; Keller, William C.; Hayes, Ken

2004-01-01

Accurate measurement of flow in the San Joaquin River at Vernalis, California, is vital to a wide range of Federal and State agencies, environmental interests, and water contractors. The U.S. Geological Survey uses a conventional stage-discharge rating technique to determine flows at Vernalis. Since the flood of January 1997, the channel has scoured and filled as much as 20 feet in some sections near the measurement site resulting in an unstable stage-discharge rating. In response to recent advances in measurement techniques and the need for more accurate measurement methods, the Geological Survey has undertaken a technology demonstration project to develop and deploy a radar-based streamflow measuring system on the bank of the San Joaquin River at Vernalis, California. The proposed flow-measurement system consists of a ground-penetrating radar system for mapping channel geometries, a microwave radar system for measuring surface velocities, and other necessary infrastructure. Cross-section information derived from ground penetrating radar provided depths similar to those measured by other instruments during the study. Likewise, surface-velocity patterns and magnitudes measured by the pulsed Doppler radar system are consistent with near surface current measurements derived from acoustic velocity instruments. Since the ratio of surface velocity to mean velocity falls to within a small range of theoretical value, using surface velocity as an index velocity to compute river discharge is feasable. Ultimately, the non-contact radar system may be used to make continuous, near-real-time flow measurements during high and medium flows. This report documents the data collected between April 14, 2002 and May 17, 2002 for the purposes of testing this radar based system. Further analyses of the data collected during this field effort will lead to further development and improvement of the system.

Electrical resistivity investigation of fluvial geomorphology to evaluate potential seepage conduits to agricultural lands along the San Joaquin River, Merced County, California, 2012–13

Science.gov (United States)

Groover, Krishangi D.; Burgess, Matthew K.; Howle, James F.; Phillips, Steven P.

2017-02-08

Increased flows in the San Joaquin River, part of the San Joaquin River Restoration Program, are designed to help restore fish populations. However, increased seepage losses could result from these higher restoration flows, which could exacerbate existing drainage problems in neighboring agricultural lands and potentially damage crops. Channel deposits of abandoned river meanders that are hydraulically connected to the river could act as seepage conduits, allowing rapid and widespread water-table rise during restoration flows. There is a need to identify the geometry and properties of these channel deposits to assess their role in potential increased seepage effects and to evaluate management alternatives for reducing seepage. Electrical and electromagnetic surface geophysical methods have provided a reliable proxy for lithology in studies of fluvial and hyporheic systems where a sufficient electrical contrast exists between deposits of differing grain size. In this study, direct-current (DC) resistivity was used to measure subsurface resistivity to identify channel deposits and to map their subsurface geometry. The efficacy of this method was assessed by using DC resistivity surveys collected along a reach of the San Joaquin River in Merced County, California, during the summers of 2012 and 2013, in conjunction with borings and associated measurements from a hydraulic profiling tool. Modeled DC resistivity data corresponded with data from cores, hand-auger samples, a hydraulic profiling tool, and aerial photographs, confirming that DC resistivity is effective for differentiating between silt and sand deposits in this setting. Modeled DC resistivity data provided detailed two-dimensional cross-sectional resistivity profiles to a depth of about 20 meters. The distribution of high-resistivity units in these profiles was used as a proxy for identifying areas of high hydraulic conductivity. These data were used subsequently to guide the location and depth of wells

Synthesis of studies in the fall low-salinity zone of the San Francisco Estuary, September-December 2011

Science.gov (United States)

Brown, Larry R.; Baxter, Randall; Castillo, Gonzalo; Conrad, Louise; Culberson, Steven; Erickson, Gregg; Feyrer, Frederick; Fong, Stephanie; Gehrts, Karen; Grimaldo, Lenny; Herbold, Bruce; Kirsch, Joseph; Mueller-Solger, Anke; Slater, Steven B.; Sommer, Ted; Souza, Kelly; Van Nieuwenhuyse, Erwin

2014-01-01

In fall 2011, a large-scale investigation (fall low-salinity habitat investigation) was implemented by the Bureau of Reclamation in cooperation with the Interagency Ecological Program to explore hypotheses about the ecological role of low-salinity habitat in the San Francisco Estuary—specifically, hypotheses about the importance of fall low-salinity habitat to the biology of delta smelt Hypomesus transpacificus, a species endemic to the San Francisco Estuary and listed as threatened or endangered under federal and state endangered species legislation. The Interagency Ecological Program is a consortium of 10 agencies that work together to develop a better understanding of the ecology of the Estuary and the effects of the State Water Project and Federal Central Valley Project operations on the physical, chemical, and biological conditions of the San Francisco Estuary. The fall low-salinity habitat investigation constitutes one of the actions stipulated in the Reasonable and Prudent Alternative issued with the 2008 Biological Opinion of the U.S. Fish and Wildlife Service, which called for adaptive management of fall Sacramento-San Joaquin Delta outflow following “wet” and “above normal” water years to alleviate jeopardy to delta smelt and adverse modification of delta smelt critical habitat. The basic hypothesis of the adaptive management of fall low-salinity habitat is that greater outflows move the low-salinity zone (salinity 1–6), an important component of delta smelt habitat, westward and that moving the low-salinity zone westward of its position in the fall of recent years will benefit delta smelt, although the specific mechanisms providing such benefit are uncertain. An adaptive management plan was prepared to guide implementation of the adaptive management of fall low-salinity habitat and to reduce uncertainty. This report has three major objectives:

Decision analysis framing study; in-valley drainage management strategies for the western San Joaquin Valley, California

Science.gov (United States)

Presser, Theresa S.; Jenni, Karen E.; Nieman, Timothy; Coleman, James

2010-01-01

Constraints on drainage management in the western San Joaquin Valley and implications of proposed approaches to management were recently evaluated by the U.S. Geological Survey (USGS). The USGS found that a significant amount of data for relevant technical issues was available and that a structured, analytical decision support tool could help optimize combinations of specific in-valley drainage management strategies, address uncertainties, and document underlying data analysis for future use. To follow-up on USGS's technical analysis and to help define a scientific basis for decisionmaking in implementing in-valley drainage management strategies, this report describes the first step (that is, a framing study) in a Decision Analysis process. In general, a Decision Analysis process includes four steps: (1) problem framing to establish the scope of the decision problem(s) and a set of fundamental objectives to evaluate potential solutions, (2) generation of strategies to address identified decision problem(s), (3) identification of uncertainties and their relationships, and (4) construction of a decision support model. Participation in such a systematic approach can help to promote consensus and to build a record of qualified supporting data for planning and implementation. In December 2008, a Decision Analysis framing study was initiated with a series of meetings designed to obtain preliminary input from key stakeholder groups on the scope of decisions relevant to drainage management that were of interest to them, and on the fundamental objectives each group considered relevant to those decisions. Two key findings of this framing study are: (1) participating stakeholders have many drainage management objectives in common; and (2) understanding the links between drainage management and water management is necessary both for sound science-based decisionmaking and for resolving stakeholder differences about the value of proposed drainage management solutions. Citing

40 CFR 180.1108 - Delta endotoxin of Bacillus thuringiensis variety San Diego encapsulated into killed Pseudomonas...

Science.gov (United States)

2010-07-01

... thuringiensis variety San Diego encapsulated into killed Pseudomonas fluorescens; exemption from the requirement... into killed Pseudomonas fluorescens; exemption from the requirement of a tolerance. The delta endotoxin of Bacillus thuringiensis variety San Diego encapsulated into killed Pseudomonas fluorescens is...

Mapping deep aquifer salinity trends in the southern San Joaquin Valley using borehole geophysical data constrained by chemical analyses

Science.gov (United States)

Gillespie, J.; Shimabukuro, D.; Stephens, M.; Chang, W. H.; Ball, L. B.; Everett, R.; Metzger, L.; Landon, M. K.

2016-12-01

The California State Water Resources Control Board and the California Division of Oil, Gas and Geothermal Resources are collaborating with the U.S. Geological Survey to map groundwater resources near oil fields and to assess potential interactions between oil and gas development and groundwater resources. Groundwater resources having salinity less than 10,000 mg/L total dissolved solids may be classified as Underground Sources of Drinking Water (USDW) and subject to protection under the federal Safe Drinking Water Act. In this study, we use information from oil well borehole geophysical logs, oilfield produced water and groundwater chemistry data, and three-dimensional geologic surfaces to map the spatial distribution of salinity in aquifers near oil fields. Salinity in the southern San Joaquin Valley is controlled primarily by depth and location. The base of protected waters occurs at very shallow depths, often 1,500 meters, in the eastern part of the San Joaquin Valley where higher runoff from the western slopes of the Sierra Nevada provide relatively abundant aquifer recharge. Stratigraphy acts as a secondary control on salinity within these broader areas. Formations deposited in non-marine environments are generally fresher than marine deposits. Layers isolated vertically between confining beds and cut off from recharge sources may be more saline than underlying aquifers that outcrop in upland areas on the edge of the valley with more direct connection to regional recharge areas. The role of faulting is more ambiguous. In some areas, abrupt changes in salinity may be fault controlled but, more commonly, the faults serve as traps separating oil-bearing strata that are exempt from USDW regulations, from water-bearing strata that are not exempt.

Persistence of historical population structure in an endangered species despite near-complete biome conversion in California's San Joaquin Desert.

Science.gov (United States)

Richmond, Jonathan Q; Wood, Dustin A; Westphal, Michael F; Vandergast, Amy G; Leaché, Adam D; Saslaw, Lawrence R; Butterfield, H Scott; Fisher, Robert N

2017-07-01

Genomic responses to habitat conversion can be rapid, providing wildlife managers with time-limited opportunities to enact recovery efforts that use population connectivity information that reflects predisturbance landscapes. Despite near-complete biome conversion, such opportunities may still exist for the endemic fauna and flora of California's San Joaquin Desert, but comprehensive genetic data sets are lacking for nearly all species in the region. To fill this knowledge gap, we studied the rangewide population structure of the endangered blunt-nosed leopard lizard Gambelia sila, a San Joaquin Desert endemic, using restriction site-associated DNA (RAD), microsatellite and mtDNA data to test whether admixture patterns and estimates of effective migration surfaces (EEMS) can identify land areas with high population connectivity prior to the conversion of native xeric habitats. Clustering and phylogenetic analyses indicate a recent shared history between numerous isolated populations and EEMS reveals latent signals of corridors and barriers to gene flow over areas now replaced by agriculture and urbanization. Conflicting histories between the mtDNA and nuclear genomes are consistent with hybridization with the sister species G. wislizenii, raising important questions about where legal protection should end at the southern range limit of G. sila. Comparative analysis of different data sets also adds to a growing list of advantages in using RAD loci for genetic studies of rare species. We demonstrate how the results of this work can serve as an evolutionary guidance tool for managing endemic, arid-adapted taxa in one of the world's most compromised landscapes. Published 2017. This article is a U.S. Government work and is in the public domain in the USA.

Remote Sensing and Modeling for Improving Operational Aquatic Plant Management

Science.gov (United States)

Bubenheim, Dave

2016-01-01

The California Sacramento-San Joaquin River Delta is the hub for California’s water supply, conveying water from Northern to Southern California agriculture and communities while supporting important ecosystem services, agriculture, and communities in the Delta. Changes in climate, long-term drought, water quality changes, and expansion of invasive aquatic plants threatens ecosystems, impedes ecosystem restoration, and is economically, environmentally, and sociologically detrimental to the San Francisco Bay/California Delta complex. NASA Ames Research Center and the USDA-ARS partnered with the State of California and local governments to develop science-based, adaptive-management strategies for the Sacramento-San Joaquin Delta. The project combines science, operations, and economics related to integrated management scenarios for aquatic weeds to help land and waterway managers make science-informed decisions regarding management and outcomes. The team provides a comprehensive understanding of agricultural and urban land use in the Delta and the major water sheds (San Joaquin/Sacramento) supplying the Delta and interaction with drought and climate impacts on the environment, water quality, and weed growth. The team recommends conservation and modified land-use practices and aids local Delta stakeholders in developing management strategies. New remote sensing tools have been developed to enhance ability to assess conditions, inform decision support tools, and monitor management practices. Science gaps in understanding how native and invasive plants respond to altered environmental conditions are being filled and provide critical biological response parameters for Delta-SWAT simulation modeling. Operational agencies such as the California Department of Boating and Waterways provide testing and act as initial adopter of decision support tools. Methods developed by the project can become routine land and water management tools in complex river delta systems.

Mercury Bioaccumulation in Fish in a Region Affected by Historic Gold Morning: The South Yuba River, Deer Creek, and Bear River Watersheds, California, 1999

National Research Council Canada - National Science Library

May, Jason T; Hothem, Roger L; Alpers, Charles N; Law, Matthew A

2000-01-01

Mercury that was used historically for gold recovery in mining areas of the Sierra Nevada continues to enter local and downstream water bodies, including the Sacramento-San Joaquin Delta and the San...

Diazinon and chlorpyrifos loads in precipitation and urban and agricultural storm runoff during January and February 2001 in the San Joaquin River basin, California

Science.gov (United States)

Zamora, Celia; Kratzer, Charles R.; Majewski, Michael S.; Knifong, Donna L.

2003-01-01

The application of diazinon and chlorpyrifos on dormant orchards in 2001 in the San Joaquin River Basin was 24 percent less and 3.2 times more than applications in 2000, respectively. A total of 16 sites were sampled during January and February 2001 storm events: 7 river sites, 8 precipitation sites, and 1 urban storm drain. The seven river sites were sampled weekly during nonstorm periods and more frequently during storm runoff from a total of four storms. The monitoring of storm runoff at a city storm drain in Modesto, California, occurred simultaneously with the collection of precipitation samples from eight sites during a January 2001 storm event. The highest concentrations of diazinon occurred during the storm periods for all 16 sites, and the highest concentrations of chlorpyrifos occurred during weekly nonstorm sampling for the river sites and during the January storm period for the urban storm drain and precipitation sites. A total of 60 samples (41 from river sites, 10 from precipitation sites, and 9 from the storm drain site) had diazinon concentrations greater than 0.08 ?g/L, the concentration being considered by the California Department of Fish and Game as its criterion maximum concentration for the protection of aquatic habitats. A total of 18 samples (2 from river sites, 9 from precipitation sites, and 7 from the storm drain site) exceeded the equivalent California Department of Fish and Game guideline of 0.02 ?g/L for chlorpyrifos. The total diazinon load in the San Joaquin River near Vernalis during January and February 2001 was 23.8 pounds active ingredient; of this amount, 16.9 pounds active ingredient were transported by four storms, 1.06 pounds active ingredient were transported by nonstorm events, and 5.82 pounds active ingredient were considered to be baseline loads. The total chlorpyrifos load in the San Joaquin River near Vernalis during January and February 2001 was 2.17 pounds active ingredient; of this amount, 0.702 pound active

A Tree-Ring Reconstruction of the Salinity Gradient in the Northern Estuary of San Francisco Bay

Directory of Open Access Journals (Sweden)

David W. Stahle

2011-04-01

Full Text Available Blue oak tree-ring chronologies correlate highly with winter–spring precipitation totals over California, with Sacramento and San Joaquin river stream flow, and with seasonal variations in the salinity gradient in San Francisco Bay. The convergence of fresh and saline currents can influence turbidity, sediment accumulation, and biological productivity in the estuary. Three selected blue oak chronologies were used to develop a 625-year-long reconstruction of the seasonal salinity gradient, or low salinity zone (LSZ, which provides a unique perspective on the interannual-to-decadal variability of this important estuarine habitat indicator. The reconstruction was calibrated with instrumental LSZ data for the winter–spring season, and explains 73% of the variance in the February–June position of the LSZ from 1956 to 2003. Because this calibration period post-dates the sweeping changes that have occurred to land cover, channel morphology, and natural streamflow regimes in California, the reconstruction provides an idealized estimate for how the LSZ might have fluctuated under the seasonal precipitation variations of the past 625 years, given the modern geometry and bathymetry of the estuary and land cover across the drainage basin. The February–June season integrates precipitation and runoff variability during the cool season, and does not extend into the late-summer dry season when LSZ extremes can negatively affect Sacramento–San Joaquin Delta (Delta agriculture and some aquatic organisms. However, there is such strong inter-seasonal persistence in the instrumental LSZ data that precipitation totals during the cool season can strongly pre-condition LSZ position in late summer. The 625-year-long reconstruction indicates strong interannual and decadal variability, the frequent recurrence of consecutive 2-year LSZ maxima and minima, large-scale ocean atmospheric forcing, and an interesting asymmetrical influence of warm El Ni

Sediment transport in the San Francisco Bay Coastal System: An overview

Science.gov (United States)

Barnard, Patrick L.; Schoellhamer, David H.; Jaffe, Bruce E.; Lester J. McKee,

2013-01-01

The papers in this special issue feature state-of-the-art approaches to understanding the physical processes related to sediment transport and geomorphology of complex coastal-estuarine systems. Here we focus on the San Francisco Bay Coastal System, extending from the lower San Joaquin-Sacramento Delta, through the Bay, and along the adjacent outer Pacific Coast. San Francisco Bay is an urbanized estuary that is impacted by numerous anthropogenic activities common to many large estuaries, including a mining legacy, channel dredging, aggregate mining, reservoirs, freshwater diversion, watershed modifications, urban run-off, ship traffic, exotic species introductions, land reclamation, and wetland restoration. The Golden Gate strait is the sole inlet connecting the Bay to the Pacific Ocean, and serves as the conduit for a tidal flow of ~ 8 x 109 m3/day, in addition to the transport of mud, sand, biogenic material, nutrients, and pollutants. Despite this physical, biological and chemical connection, resource management and prior research have often treated the Delta, Bay and adjacent ocean as separate entities, compartmentalized by artificial geographic or political boundaries. The body of work herein presents a comprehensive analysis of system-wide behavior, extending a rich heritage of sediment transport research that dates back to the groundbreaking hydraulic mining-impact research of G.K. Gilbert in the early 20th century.

Evolving the Evolving: Territory, Place and Rewilding in the California Delta

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Brett Milligan

2017-10-01

Full Text Available Current planning and legislation in California’s Sacramento-San Joaquin Delta call for the large-scale ecological restoration of aquatic and terrestrial habitats. These ecological mandates have emerged in response to the region’s infrastructural transformation and the Delta’s predominant use as the central logistical hub in the state’s vast water conveyance network. Restoration is an attempt to recover what was externalized by the logic and abstractions of this logistical infrastructure. However, based on findings from our research, which examined how people are using restored and naturalized landscapes in the Delta and how these landscapes are currently planned for, we argue that as mitigatory response, restoration planning continues some of the same spatial abstractions and inequities by failing to account for the Delta as an urbanized, cultural and unique place. In interpreting how these conditions have come to be, we give attention to a pluralistic landscape approach and a coevolutionary reading of planning, policy, science and landscapes to discuss the conservation challenges presented by “Delta as an Evolving Place”. We suggest that for rewilding efforts to be successful in the Delta, a range of proactive, opportunistic, grounded and participatory tactics will be required to shift towards a more socio-ecological approach.

Influence of EDTA on the electrochemical removal of mercury (II) in soil from San Joaquin, Queretaro, Mexico

Energy Technology Data Exchange (ETDEWEB)

Robles, I.; Serrano, T.; Perez, J. J.; Bustos, E. [Centro de Investigacion y Desarrollo Tecnologico en Electroquimica, S. C., Parque Tecnologico Queretaro, Sanfandila, Pedro Escobedo, 76703 Queretaro (Mexico); Hernandez, G.; Solis, S. [UNAM, Campus Juriquilla, Centro de Geociencias, Boulevard Juriquilla 3001, 76230 Queretaro (Mexico); Garcia, R. [UNAM, Centro de Ciencias de la Atmosfera, Ciudad Universitaria, 04510 Mexico D. F. (Mexico); Pi, T., E-mail: ebustos@cideteq.mx [UNAM, Instituto de Geologia, Ciudad Universitaria, 04510 Mexico D. F. (Mexico)

2014-07-01

The removal of mercury from soil and Ca-bentonite was performed using electrochemical treatment adding ethylendiamine-tetra acetic acid (EDTA) as a complexing agent to improve the electrochemical removal of Hg (II) in soil from San Joaquin, Queretaro, Mexico. During the electrokinetic treatment in the presence of 0.1 M EDTA, most of Hg (II) migrates toward the anode obtaining the highest removal efficiencies close to 70% in bentonite after 9 h. Using 0.1 M HCl only 65% efficiency was attained after 13 h in the cathodic side. EDTA formed a negatively charged stable complex that migrates to the cathode by the application of the electrokinetic treatment across Hg - EDTA synthesized complex. Finally, the predominant crystallographic structures of the samples were examined using X-ray diffraction. (Author)

Influence of EDTA on the electrochemical removal of mercury (II) in soil from San Joaquin, Queretaro, Mexico

International Nuclear Information System (INIS)

Robles, I.; Serrano, T.; Perez, J. J.; Bustos, E.; Hernandez, G.; Solis, S.; Garcia, R.; Pi, T.

2014-01-01

The removal of mercury from soil and Ca-bentonite was performed using electrochemical treatment adding ethylendiamine-tetra acetic acid (EDTA) as a complexing agent to improve the electrochemical removal of Hg (II) in soil from San Joaquin, Queretaro, Mexico. During the electrokinetic treatment in the presence of 0.1 M EDTA, most of Hg (II) migrates toward the anode obtaining the highest removal efficiencies close to 70% in bentonite after 9 h. Using 0.1 M HCl only 65% efficiency was attained after 13 h in the cathodic side. EDTA formed a negatively charged stable complex that migrates to the cathode by the application of the electrokinetic treatment across Hg - EDTA synthesized complex. Finally, the predominant crystallographic structures of the samples were examined using X-ray diffraction. (Author)

Groundwater quality in the shallow aquifers of the Tulare, Kaweah, and Tule Groundwater Basins and adjacent highlands areas, Southern San Joaquin Valley, California

Science.gov (United States)

Fram, Miranda S.

2017-01-18

Groundwater provides more than 40 percent of California’s drinking water. To protect this vital resource, the State of California created the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The Priority Basin Project of the GAMA Program provides a comprehensive assessment of the State’s groundwater quality and increases public access to groundwater-quality information. The shallow aquifers of the Tulare, Kaweah, and Tule groundwater basins and adjacent highlands areas of the southern San Joaquin Valley constitute one of the study units being evaluated.

Modeling the long-term fate of agricultural nitrate in groundwater in the San Joaquin Valley, California

Science.gov (United States)

Chapelle, Francis H.; Campbell, Bruce G.; Widdowson, Mark A.; Landon, Mathew K.

2013-01-01

Nitrate contamination of groundwater systems used for human water supplies is a major environmental problem in many parts of the world. Fertilizers containing a variety of reduced nitrogen compounds are commonly added to soils to increase agricultural yields. But the amount of nitrogen added during fertilization typically exceeds the amount of nitrogen taken up by crops. Oxidation of reduced nitrogen compounds present in residual fertilizers can produce substantial amounts of nitrate which can be transported to the underlying water table. Because nitrate concentrations exceeding 10 mg/L in drinking water can have a variety of deleterious effects for humans, agriculturally derived nitrate contamination of groundwater can be a serious public health issue. The Central Valley aquifer of California accounts for 13 percent of all the groundwater withdrawals in the United States. The Central Valley, which includes the San Joaquin Valley, is one of the most productive agricultural areas in the world and much of this groundwater is used for crop irrigation. However, rapid urbanization has led to increasing groundwater withdrawals for municipal public water supplies. That, in turn, has led to concern about how contaminants associated with agricultural practices will affect the chemical quality of groundwater in the San Joaquin Valley. Crop fertilization with various forms of nitrogen-containing compounds can greatly increase agricultural yields. However, leaching of nitrate from soils due to irrigation has led to substantial nitrate contamination of shallow groundwater. That shallow nitrate-contaminated groundwater has been moving deeper into the Central Valley aquifer since the 1960s. Denitrification can be an important process limiting the mobility of nitrate in groundwater systems. However, substantial denitrification requires adequate sources of electron donors in order to drive the process. In many cases, dissolved organic carbon (DOC) and particulate organic carbon

Turbidity and salinity affect feeding performance and physiological stress in the endangered delta smelt.

Science.gov (United States)

Hasenbein, Matthias; Komoroske, Lisa M; Connon, Richard E; Geist, Juergen; Fangue, Nann A

2013-10-01

Coastal estuaries are among the most heavily impacted ecosystems worldwide with many keystone fauna critically endangered. The delta smelt (Hypomesus transpacificus) is an endangered pelagic fish species endemic to the Sacramento-San Joaquin Estuary in northern California, and is considered as an indicator species for ecosystem health. This ecosystem is characterized by tidal and seasonal gradients in water parameters (e.g., salinity, temperature, and turbidity), but is also subject to altered water-flow regimes due to water extraction. In this study, we evaluated the effects of turbidity and salinity on feeding performance and the stress response of delta smelt because both of these parameters are influenced by water flows through the San Francisco Bay Delta (SFBD) and are known to be of critical importance to the completion of the delta smelt's life cycle. Juvenile delta smelt were exposed to a matrix of turbidities and salinities ranging from 5 to 250 nephelometric turbidity units (NTUs) and 0.2 to 15 parts per thousand (ppt), respectively, for 2 h. Best statistical models using Akaike's Information Criterion supported that increasing turbidities resulted in reduced feeding rates, especially at 250 NTU. In contrast, best explanatory models for gene transcription of sodium-potassium-ATPase (Na/K-ATPase)-an indicator of osmoregulatory stress, hypothalamic pro-opiomelanocortin-a precursor protein to adrenocorticotropic hormone (expressed in response to biological stress), and whole-body cortisol were affected by salinity alone. Only transcription of glutathione-S-transferase, a phase II detoxification enzyme that protects cells against reactive oxygen species, was affected by both salinity and turbidity. Taken together, these data suggest that turbidity is an important determinant of feeding, whereas salinity is an important abiotic factor influencing the cellular stress response in delta smelt. Our data support habitat association studies that have shown greater

Generation of hydrogen peroxide from San Joaquin Valley particles in a cell-free solution

Directory of Open Access Journals (Sweden)

H. Shen

2011-01-01

Full Text Available Epidemiological studies have shown a correlation between exposure to ambient particulate matter (PM and adverse health effects. One proposed mechanism of PM-mediated health effects is the generation of reactive oxygen species (ROS – e.g., superoxide (^•O₂⁻, hydrogen peroxide (HOOH, and hydroxyl radical (^•OH – followed by oxidative stress. There are very few quantitative, specific measures of individual ROS generated from PM, but this information would help to more quantitatively address the link between ROS and the health effects of PM. To address this gap, we quantified the generation of HOOH by PM collected at an urban (Fresno and rural (Westside site in the San Joaquin Valley (SJV of California during summer and winter from 2006 to 2009. HOOH was quantified by HPLC after extracting the PM in a cell-free, phosphate-buffered saline (PBS solution with or without 50 μM ascorbate (Asc. Our results show that the urban PM generally generates much more HOOH than the rural PM but that there is no apparent seasonal difference in HOOH generation. In nearly all of the samples the addition of a physiologically relevant concentration of Asc greatly enhances HOOH formation, but a few of the coarse PM samples were able to generate a considerable amount of HOOH in the absence of added Asc, indicating the presence of unknown reductants. Normalized by air volume, the fine PM (PM_2.5 generally makes more HOOH than the corresponding coarse PM (PM_cf, i.e., 2.5 to 10 μm, primarily because the mass concentration of PM_2.5 is much higher than that of PM_cf. However, normalized by PM mass, the coarse PM typically generates more HOOH than the fine PM. The amount of HOOH produced by SJV PM is reduced on average by (78 ± 15% when the transition metal chelator desferoxamine (DSF is added to the extraction solution, indicating that transition metals play a dominant role in HOOH

Formation of hydroxyl radical from San Joaquin Valley particles extracted in a cell-free surrogate lung fluid

Directory of Open Access Journals (Sweden)

H. Shen

2011-09-01

Full Text Available Previous studies have suggested that the adverse health effects from ambient particulate matter (PM are linked to the formation of reactive oxygen species (ROS by PM in cardiopulmonary tissues. While hydroxyl radical (^•OH is the most reactive of the ROS species, there are few quantitative studies of ^•OH generation from PM. Here we report on ^•OH formation from PM collected at an urban (Fresno and rural (Westside site in the San Joaquin Valley (SJV of California. We quantified ^•OH in PM extracts using a cell-free, phosphate-buffered saline (PBS solution with or without 50 μM ascorbate (Asc. The results show that generally the urban Fresno PM generates much more ^•OH than the rural Westside PM. The presence of Asc at a physiologically relevant concentration in the extraction solution greatly enhances ^•OH formation from all the samples. Fine PM (PM_2.5 generally makes more ^•OH than the corresponding coarse PM (PM_cf, i.e. with diameters of 2.5 to 10 μm normalized by air volume collected, while the coarse PM typically generates more ^•OH normalized by PM mass. ^•OH production by SJV PM is reduced on average by (97 ± 6 % when the transition metal chelator desferoxamine (DSF is added to the extraction solution, indicating a dominant role of transition metals. By measuring calibration curves of ^•OH generation from copper and iron, and quantifying copper and iron concentrations in our particle extracts, we find that PBS-soluble copper is primarily responsible for ^•OH production by the SJV PM, while iron often makes a significant contribution. Extrapolating our results to expected burdens of PM-derived ^•OH in human lung lining fluid suggests that typical daily PM exposures in the San Joaquin Valley are unlikely to result in a high amount of pulmonary ^•OH, although high

1995 Integrated Monitoring Study: Fog measurements in the Southern San Joaquin Valley - preliminary results

Energy Technology Data Exchange (ETDEWEB)

Collett, J. Jr.; Bator, A.; Sherman, D.E. [Colorado State Univ., Fort Collins, CO (United States)] [and others

1996-12-31

Fogs were sampled at three ground-based stations in the southern portion of California`s San Joaquin Valley as part of the winter component of the 1995 Integrated Monitoring Study (IMS95). The three sampling sites included two urban locations (Bakersfield and Fresno) and one rural location (near the Kern Wildlife Refuge). Both bulk and drop size-fractionated samples were collected at each site. Several fog events were sampled, with three periods of extensive fog coverage that included all three sampling sites. Results of preliminary data analysis are presented. Fog collected at the sites was generally quite basic. Most bulk fog samples had pH values above 6 reflecting strong inputs from ammonia. Occasional strong sulfur plumes at Bakersfield, however, tended to lower the fog pH. Aside from these periods, nitrate was generally present at much higher concentrations in the fog than sulfate. Decreases in fogwater loadings of major species over the course of one extended fog episode at Fresno suggest significant deposition was occurring to the surface, consistent with observations of substantial droplet fluxes to exposed surfaces during that period. 16 refs., 7 figs., 1 tab.

Agricultural pesticide use and adverse birth outcomes in the San Joaquin Valley of California.

Science.gov (United States)

Larsen, Ashley E; Gaines, Steven D; Deschênes, Olivier

2017-08-29

Virtually all agricultural communities worldwide are exposed to agricultural pesticides. Yet, the health consequences of such exposure are poorly understood, and the scientific literature remains ambiguous. Using individual birth and demographic characteristics for over 500 000 birth observations between 1997-2011 in the agriculturally dominated San Joaquin Valley, California, we statistically investigate if residential agricultural pesticide exposure during gestation, by trimester, and by toxicity influences birth weight, gestational length, or birth abnormalities. Overall, our analysis indicates that agricultural pesticide exposure increases adverse birth outcomes by 5-9%, but only among the population exposed to very high quantities of pesticides (e.g., top 5th percentile, i.e., ~4200 kg applied over gestation). Thus, policies and interventions targeting the extreme right tail of the pesticide distribution near human habitation could largely eliminate the adverse birth outcomes associated with agricultural pesticide exposure documented in this study.The health consequences of exposure to pesticides are uncertain and subject to much debate. Here, the effect of exposure during pregnancy is investigated in an agriculturally dominated residential area, showing that an increase in adverse birth outcomes is observed with very high levels of pesticide exposure.

Monitoring bacterial indicators of water quality in a tidally influenced delta: A Sisyphean pursuit.

Science.gov (United States)

Partyka, Melissa L; Bond, Ronald F; Chase, Jennifer A; Atwill, Edward R

2017-02-01

The Sacramento-San Joaquin Delta Estuary (Delta) is the confluence of two major watersheds draining the Western Sierra Nevada mountains into the Central Valley of California, ultimately terminating into San Francisco Bay. We sampled 88 sites once a month for two years (2006-2008) over 87 separate sampling events for a total of 1740 samples. Water samples were analyzed for fecal indicator bacteria (Escherichia coli, enterococci and fecal coliforms), and 53 other physiochemical, land use, and environmental characteristics. The purpose of the study was to create a baseline of microbial water quality in the Delta and to identify various factors (climatic, land use, tidal, etc.) that were associated with elevated concentrations of indicator bacteria. Fecal indicator bacteria generally had weak to modest relationships to environmental conditions; the strength and direction of which varied for each microbial indicator, drainage region, and across seasons. Measured and unmeasured, site-specific effects accounted for large portions of variance in model predictions (ρ=0.086 to 0.255), indicating that spatial autocorrelation was a major component of water quality outcomes. The effects of tidal cycling and lack of connectivity between waterways and surrounding landscapes likely contributed to the lack of association between local land uses and microbial outcomes, though weak associations may also be indicative of mismatched spatiotemporal scales. The complex nature of this system necessitates continued monitoring and regular updates to statistical models designed to predict microbial water quality. Copyright © 2016 Elsevier B.V. All rights reserved.

40 CFR 131.37 - California.

Science.gov (United States)

2010-07-01

... criteria are applicable to waters specified in the Water Quality Control Plan for Salinity for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary, adopted by the California State Water Resources Control... increased mortality and loss of habitat from increased water salinity; or for plants, significant reduction...

Log analysis in the shallow oil sands of the San Joaquin Valley, California

International Nuclear Information System (INIS)

Vohs, J.B.

1976-01-01

Many fields in the San Joaquin Valley of California produce oil from a depth of 2,500 ft or less. During the period of primary production in these fields, evaluation of potential pay intervals from logs was restricted to examination of ES logs and correlation. With the introduction of secondary and tertiary recovery techniques the need for more and better answers, more quickly available, became apparent. However, several log-analysis problems had to be resolved. Formation evaluation using well logs was complicated by the shaliness of the sand intervals, the low and variable salinity of the formation waters, and the presence of low-pressure-gas (depleted) zones in many of the shallow sands. Solutions to these problems have required more modern logging programs and interpretation techniques. Logs available for the evaluation of these sands are the dual induction-laterolog, the compensated formation density log, the compensated neutron log, and the microlaterolog or proximity log. With this suite of logs it is possible to determine the shale content, porosity, saturation in the flushed zone, and water saturation of the sand, and to locate the low-pressure-gas sands and depleted zones. In cases where freshwater and oil are interlayered, it is possible to tell which sands contain oil and which contain only water. Because a quick interpretation is required, wellsite techniques are called for. These will be described

Environmental and indoor study of Radon concentration in San Joaquin area, Queretaro, Mexico, first results

International Nuclear Information System (INIS)

Hinojo Alonso, N.A.; Kotsarenko, A.; Yutsis, V.; Hernandez Silva, G.; Perego, P.; Fazio, M.; Grimalsky, V.; Koshevaya, S.; Foglia, F.; Cortes Silva, A.; García Martínez, R.; Martínez Reyes, J.; Norini, G.; Groppelli, G.

2013-01-01

A highly contaminated zone with a maximum over 57,000 Bq/m 3 was discovered in a populated community “Agua de Venados” during the 2009–2011 soil Radon survey in San Joaquin, Queretaro State, Mexico. The indoor Radon monitoring accomplished in 2 different époques in a nearby 4 dwellings has shown an increased Radon hazard in 1 of the 4 buildings (about 300 Bq/m 3 ) during a rainy season and highly elevated indoor Radon levels (over 400 Bq/m 3 ) already in 3 buildings during a dry season. The averaged diurnal indoor Radon variations are in a correlation with the atmospheric pressure and the air humidity and are independent on the air temperature. The maximum indoor Radon hazard for dwellings is estimated for the morning interval 5–10 a.m. - Highlights: ► Emanative zone of 57,000 Bq/m 3 was found in area “Agua de Venados”. ► Indoor Radon level in a nearby dwellings elevates during a dry season. ► Maximum risk for residents was estimated during the daily interval 5–10 a.m

Land subsidence in the San Joaquin Valley, California, USA, 2007-14

Science.gov (United States)

Sneed, Michelle; Brandt, Justin

2015-01-01

Rapid land subsidence was recently measured using multiple methods in two areas of the San Joaquin Valley (SJV): between Merced and Fresno (El Nido), and between Fresno and Bakersfield (Pixley). Recent land-use changes and diminished surface-water availability have led to increased groundwater pumping, groundwater-level declines, and land subsidence. Differential land subsidence has reduced the flow capacity of water-conveyance systems in these areas, exacerbating flood hazards and affecting the delivery of irrigation water. Vertical land-surface changes during 2007–2014 were determined by using Interferometric Synthetic Aperture Radar (InSAR), Continuous Global Positioning System (CGPS), and extensometer data. Results of the InSAR analysis indicate that about 7600 km2 subsided 50–540 mm during 2008–2010; CGPS and extensometer data indicate that these rates continued or accelerated through December 2014. The maximum InSAR-measured rate of 270 mm yr−1 occurred in the El Nido area, and is among the largest rates ever measured in the SJV. In the Pixley area, the maximum InSAR-measured rate during 2008–2010 was 90 mm yr−1. Groundwater was an important part of the water supply in both areas, and pumping increased when land use changed or when surface water was less available. This increased pumping caused groundwater-level declines to near or below historical lows during the drought periods 2007–2009 and 2012–present. Long-term groundwater-level and land-subsidence monitoring in the SJV is critical for understanding the interconnection of land use, groundwater levels, and subsidence, and evaluating management strategies that help mitigate subsidence hazards to infrastructure while optimizing water supplies.

Factors motivating Latino college students to pursue STEM degrees on CSU campuses in the southern San Joaquin Valley

Science.gov (United States)

Ramirez, Gabriel

The purpose of this study was to determine what factors were motivating Latino/a students in the southern San Joaquin Valley to pursue STEM degrees and whether these factors were specific to the Latino/a culture. A 12-question survey was administered to STEM majors at California State University, Bakersfield and California State University, Fresno and interviews were conducted with those survey respondents who agreed to be part of the process. The results of the survey suggested that factors such as STEM subject matter, STEM career knowledge, the possibility of a high paying salary, high school STEM grades, and family influence were significant in motivating Latino/a students to pursue STEM degrees. The results of the Chi Square Test suggested the Latino/a students' responses about college STEM degree granting statistics, the possibility of a high salary, and the effects of setbacks were significantly different to those of their non-Latino/a counterparts.

Waterfowl - Cholera [ds107

Data.gov (United States)

California Department of Resources — This is a data set of the location and number of waterfowl carcasses observed during aerial surveys of the Sacramento-San Joaquin Delta by survey tract. It is...

Monitoring the Northern San Francisco Bay Water Quality with Landsat-8. Nicholas B. Tufillaroa , and Curtiss O. Davisa. aOregon State University, Corvallis, OR, 97331, USA, nbt@coas.oregonstate.edu

Science.gov (United States)

Davis, C. O.; Tufillaro, N.

2016-02-01

Landsat-8's high spatial resolution ( 30 nm nominal), improved signal-to-noise (12bit digitizer) and expanded band set open up new applications for coastal and in-land waters. We use a recent ocean color processor for Landsat-8 created by Vanhellemont and Ruddick (RSE, 2015)to examine changes in the Northern San Francisco Bay, in particular looking for possiblechanges due to the on-going California drought. For instance, a temporary drought barrier to prevent salt water intrusion was placed during May of 2015 at West False River in the Sacramento-San Joaquin Delta. Using the new Landsat-8 ocean color products, we illustrate how to monitor changes in macro algae and plants (Sago pondweed (native), Curly pondweed (non-native)) in regions directly effected,such as the Franks Track region. Product maps using panchromatic enhancement ( 15 m resolution) andscene based atmospheric correction allow a detailed synoptic look every 16 days during theSpring, Summer, and Fall of 2015. This work is part of a larger NASA funded project aimed atimproving the modeling and predictive capabilities of the biogeochemical state for the San Francisco Bay(Davis, PI: Impacts of Population Growth on the San Francisco Bay and Delta Ecosystem, 2014-2017).

Recreation Value of Water to Wetlands in the San Joaquin Valley: Linked Multinomial Logit and Count Data Trip Frequency Models

Science.gov (United States)

Creel, Michael; Loomis, John

1992-10-01

The recreational benefits from providing increased quantities of water to wildlife and fisheries habitats is estimated using linked multinomial logit site selection models and count data trip frequency models. The study encompasses waterfowl hunting, fishing and wildlife viewing at 14 recreational resources in the San Joaquin Valley, including the National Wildlife Refuges, the State Wildlife Management Areas, and six river destinations. The economic benefits of increasing water supplies to wildlife refuges were also examined by using the estimated models to predict changing patterns of site selection and overall participation due to increases in water allocations. Estimates of the dollar value per acre foot of water are calculated for increases in water to refuges. The resulting model is a flexible and useful tool for estimating the economic benefits of alternative water allocation policies for wildlife habitat and rivers.

Serologic survey for disease in endangered San Joaquin kit fox, Vulpes macrotis mutica, inhabiting the Elk Hills Naval Petroleum Reserve, Kern County, California

Energy Technology Data Exchange (ETDEWEB)

McCue, P.M.; O' Farrell, T.P.

1986-07-01

Serum from endangered San Joaquin kit foxes, Vulpes macrotis mutica, and sympatric wildlife inhabiting the Elk Hills Petroleum Reserve, Kern County, and Elkhorn Plain, San Luis Obispo County, California, was collected in 1981 to 1982 and 1984, and tested for antibodies against 10 infectious disease pathogens. Proportions of kit fox sera containing antibodies against diseases were: canine parvovirus, 100% in 1981 to 1982 and 67% in 1984; infectious canine hepatitis, 6% in 1981 to 1982 and 21% in 1984; canine distemper, 0 in 1981 to 1982 and 14% in 1984; tularemia, 8% in 1981 to 1982 and 31% in 1984; Brucella abortus, 8% in 1981 to 1982 and 3% in 1984; Brucella canis, 14% in 1981 to 1982 and 0 in 1984; toxoplasmosis, 6% in 1981 to 1982; coccidioidomycosis, 3% in 1981 to 1982; and plague and leptospirosis, 0 in 1981 to 1982. High population density, overlapping home ranges, ability to disperse great distances, and infestation by ectoparasites were cited as possible factors in the transmission and maintenance of these diseases in kit fox populations.

Integrating scientific knowledge into large-scale restoration programs: the CALFED Bay-Delta Program experience

Science.gov (United States)

Taylor, K.A.; Short, A.

2009-01-01

Integrating science into resource management activities is a goal of the CALFED Bay-Delta Program, a multi-agency effort to address water supply reliability, ecological condition, drinking water quality, and levees in the Sacramento-San Joaquin Delta of northern California. Under CALFED, many different strategies were used to integrate science, including interaction between the research and management communities, public dialogues about scientific work, and peer review. This paper explores ways science was (and was not) integrated into CALFED's management actions and decision systems through three narratives describing different patterns of scientific integration and application in CALFED. Though a collaborative process and certain organizational conditions may be necessary for developing new understandings of the system of interest, we find that those factors are not sufficient for translating that knowledge into management actions and decision systems. We suggest that the application of knowledge may be facilitated or hindered by (1) differences in the objectives, approaches, and cultures of scientists operating in the research community and those operating in the management community and (2) other factors external to the collaborative process and organization.

Anadromous salmonids in the Delta: New science 2006–2016

Science.gov (United States)

Perry, Russell W.; Buchanan, Rebecca A.; Brandes, Patricia L.; Burau, Jon R.; Israel, Joshua A

2016-01-01

As juvenile salmon enter the Sacramento–SanJoaquin River Delta (“the Delta”) they disperse among its complex channel network where they are subject to channel-specific processes that affect their rate of migration, vulnerability to predation, feeding success, growth rates, and ultimately, survival. In the decades before 2006, tools available to quantify growth, dispersal, and survival of juvenile salmon in this complex channel network were limited.Fortunately, thanks to technological advances such as acoustic telemetry and chemical and structural otolith analysis, much has been learned over the past decade about the role of the Delta in the life cycle of juvenile salmon. Here, we review new science between 2006and 2016 that sheds light on how different life stages and runs of juvenile salmon grow, move, and survive in the complex channel network of the Delta. One of the most important advances during the past decade has been the widespread adoption of acoustic telemetry techniques. Use of telemetry has shed light on how survival varies among alternative migration routes and the proportion of fish that use each migration route. Chemical and structural analysis of otoliths has provided insights about when juveniles left their natal river and provided evidence of extended rearing in the brackish or saltwater regions of the Delta. New advancements in genetics now allow individuals captured by trawls to be assigned to specific runs. Detailed information about movement and survival in the Delta has spurred development of agent-based models of juvenile salmon that are coupled to hydrodynamic models. Although much has been learned, knowledge gaps remain about how very small juvenile salmon (fry and parr) use the Delta. Understanding how all life stages of juvenile salmon grow, rear, and survive in the Delta is critical for devising management strategies that support a diversity of life history strategies.

Quantifying anthropogenic contributions to century-scale groundwater salinity changes, San Joaquin Valley, California, USA

Science.gov (United States)

Hansen, Jeffrey; Jurgens, Bryant; Fram, Miranda S.

2018-01-01

Total dissolved solids (TDS) concentrations in groundwater tapped for beneficial uses (drinking water, irrigation, freshwater industrial) have increased on average by about 100 mg/L over the last 100 years in the San Joaquin Valley, California (SJV). During this period land use in the SJV changed from natural vegetation and dryland agriculture to dominantly irrigated agriculture with growing urban areas. Century-scale salinity trends were evaluated by comparing TDS concentrations and major ion compositions of groundwater from wells sampled in 1910 (Historic) to data from wells sampled in 1993-2015 (Modern). TDS concentrations in subregions of the SJV, the southern (SSJV), western (WSJV), northeastern (NESJV), and southeastern (SESJV) were calculated using a cell-declustering method. TDS concentrations increased in all regions, with the greatest increases found in the SSJV and SESJV. Evaluation of the Modern data from the NESJV and SESJV found higher TDS concentrations in recently recharged (post-1950) groundwater from shallow (soil amendments combined. Bicarbonate showed the greatest increase among major ions, resulting from enhanced silicate weathering due to recharge of irrigation water enriched in CO2 during the growing season. The results of this study demonstrate that large anthropogenic changes to the hydrologic regime, like massive development of irrigated agriculture in semi-arid areas like the SJV, can cause large changes in groundwater quality on a regional scale.

Size, Composition, and Sources of Health Relevant Particulate Matter in the San Joaquin Valley

Science.gov (United States)

Ham, Walter Allan

Particulate Matter (PM) is an environment contaminant that has been associated with adverse health effects in epidemiological and toxicological studies. Atmospheric PM is made up of a diverse array of chemical species that are emitted from multiple sources across a range of aerodynamic diameters spanning several orders of magnitude. The focus of the present work was the characterization of ambient PM with aerodynamic diameters below 1.8 mum (PM1.8) in 6 size sub-fractions including PM0.1. Chemical species measured included organic carbon, elemental carbon, water soluble ions, trace metals, and organic molecular markers in urban and rural environments in the San Joaquin Valley. These measurements were used to determine differences in relative diurnal size distributions during a severe winter stagnation event, seasonal changes in PM size and composition, and the source origin of carbonaceous PM. This size-resolved information was used to calculate lung deposition patterns of health relevant PM species to evaluate seasonal differences in PM dose. By accurately calculating PM dose, researchers are able to more directly link ambient PM characterization data with biological endpoints. All of these results are used to support ongoing toxicological health effects studies. These types of analyses are important as this type of information may assist regulators with developing control strategies to reduce health effects caused by particulate air pollution.

Aircraft Observations of Nitrous Oxide (N2O) in the San Joaquin Valley of California

Science.gov (United States)

Muto, S.; Herrera, S.; Pusede, S.

2017-12-01

Agriculture is the largest source of anthropogenic nitrous oxide (N2O) in the U.S. While it is generally known which processes produce N2O, there is considerable uncertainty in controls over N2O emissions. Factors that determine N2O fluxes, such as soil properties and manure management, are highly variable in space and time, and, as a result, it has proven difficult to upscale chamber-derived soil flux measurements to regional spatial scales. Aircraft observations provide a regional picture of the N2O spatial distribution, but, because N2O is very long-lived, it is challenging to attribute measured concentrations of N2O to distinct local sources, especially over areas with complex and integrated land use. This study takes advantage of a novel aircraft N2O dataset collected onboard the low-flying, slow-moving NASA C-23 Sherpa in the San Joaquin Valley (SJV) of California, a region with a variety of N2O sources, including dairies, feedlots, fertilized cropland, and industrial facilities. With these measurements, we link observed N2O enhancements to specific sources at sub-inventory spatial scales. We compare our results with area-weighted emission profiles obtained by integrating detailed emission inventory data, agricultural statistics, and GIS source mapping.

Effects of lamellae size distributions from 40Ar/39Ar on sedimentary thermo-chronology in the San Joaquin Basin

International Nuclear Information System (INIS)

Jepsen, A.-M.; Lerche, I.; Thomsen, R.O.

1990-01-01

A model description is provided for the release of 40 Ar/ 39 Ar from detrital microclines which specifically includes the effects of grain size distributions, thus allowing smaller grains to release argon faster than the more retentive larger grains. The model also includes the effects of sedimentary thermal history after burial influencing the pre-depositional 40 Ar/ 30 Ar ratio. Application of the model to the measured age spectra from six depths in the Tejon Block and four in the Basin Block of the San Joaquin Basin demonstrates that the grain size distribution effect plays a major role in masking the extraction of thermal history information from the observed age spectra. In addition, the grain size effect is not systematic with depth, and other competing effects, such as isotopic fractionation of diffusion coefficients, multi-provenance depositional supply, and variable concentrations of 40 Ar and 39 K per microcline at burial deposition time, make the extraction of thermal history information even more difficult. (author)

Childhood asthma, air quality, and social suffering among Mexican Americans in California's San Joaquin Valley: "Nobody talks to us here".

Science.gov (United States)

Schwartz, Norah Anita; Pepper, David

2009-10-01

Nearly one in five Mexican American children residing in California's San Joaquin Valley (the Valley) in 2007 had an asthma attack at some point in their life. Numerous epidemiological studies have suggested that compared with other ethnic groups and Latino subgroups residing in the United States, Mexican origin children have the lowest rates of pediatric asthma. Ethnographic research conducted in central California, however, suggests otherwise. Known for its agricultural produce, extreme poverty, and poor air quality, the Valley is a magnet for the Mexican immigrant farm worker population. We conducted an exploratory ethnographic study to examine health disparities, social suffering, and childhood asthma in the Valley. Many Valley residents believe that their children's health concerns are being ignored. Open-ended interviews uncovered a largely rural community suffering not only from the effects of childhood asthma but the inability to have their experiences taken seriously.

Social disparities in nitrate-contaminated drinking water in California's San Joaquin Valley.

Science.gov (United States)

Balazs, Carolina; Morello-Frosch, Rachel; Hubbard, Alan; Ray, Isha

2011-09-01

Research on drinking water in the United States has rarely examined disproportionate exposures to contaminants faced by low-income and minority communities. This study analyzes the relationship between nitrate concentrations in community water systems (CWSs) and the racial/ethnic and socioeconomic characteristics of customers. We hypothesized that CWSs in California's San Joaquin Valley that serve a higher proportion of minority or residents of lower socioeconomic status have higher nitrate levels and that these disparities are greater among smaller drinking water systems. We used water quality monitoring data sets (1999-2001) to estimate nitrate levels in CWSs, and source location and census block group data to estimate customer demographics. Our linear regression model included 327 CWSs and reported robust standard errors clustered at the CWS level. Our adjusted model controlled for demographics and water system characteristics and stratified by CWS size. Percent Latino was associated with a 0.04-mg nitrate-ion (NO3)/L increase in a CWS's estimated NO3 concentration [95% confidence interval (CI), -0.08 to 0.16], and rate of home ownership was associated with a 0.16-mg NO3/L decrease (95% CI, -0.32 to 0.002). Among smaller systems, the percentage of Latinos and of homeownership was associated with an estimated increase of 0.44 mg NO3/L (95% CI, 0.03-0.84) and a decrease of 0.15 mg NO3/L (95% CI, -0.64 to 0.33), respectively. Our findings suggest that in smaller water systems, CWSs serving larger percentages of Latinos and renters receive drinking water with higher nitrate levels. This suggests an environmental inequity in drinking water quality.

Ozone Laminae and Their Entrainment Into a Valley Boundary Layer, as Observed From a Mountaintop Monitoring Station, Ozonesondes, and Aircraft Over California's San Joaquin Valley

Science.gov (United States)

Faloona, I. C.; Conley, S. A.; Caputi, D.; Trousdell, J.; Chiao, S.; Eiserloh, A. J., Jr.; Clark, J.; Iraci, L. T.; Yates, E. L.; Marrero, J. E.; Ryoo, J. M.; McNamara, M. E.

2016-12-01

The San Joaquin Valley of California is wide ( 75 km) and long ( 400 km), and is situated under strong atmospheric subsidence due, in part, to the proximity of the midlatitude anticyclone of the Pacific High. The capping effect of this subsidence is especially prominent during the warm season when ground level ozone is a serious air quality concern across the region. While relatively clean marine boundary layer air is primarily funneled into the valley below the strong subsidence inversion at significant gaps in the upwind Coast Range mountains, airflow aloft also spills over these barriers and mixes into the valley from above. Because this transmountain flow occurs under the influence of synoptic subsidence it tends to present discrete, laminar sheets of differing air composition above the valley boundary layer. Meanwhile, although the boundary layers tend to remain shallow due to the prevailing subsidence, orographic and anabatic venting of valley boundary layer air around the basin whips up a complex admixture of regional air masses into a "buffer layer" just above the boundary layer (zi) and below the lower free troposphere. We present scalar data of widely varying lifetimes including ozone, methane, NOx, and thermodynamic observations from upwind and within the San Joaquin Valley to better explain this layering and its subsequent erosion into the valley boundary layer via entrainment. Data collected at a mountaintop monitoring station on Chews Ridge in the Coast Range, by coastal ozonesondes, and aircraft are analyzed to document the dynamic layering processes around the complex terrain surrounding the valley. Particular emphasis will be made on observational methods whereby distal ozone can be distinguished from the regional ozone to better understand the influence of exogenous sources on air quality in the valley.

Dynamic modeling of organophosphate pesticide load in surface water in the northern San Joaquin Valley watershed of California

Energy Technology Data Exchange (ETDEWEB)

Luo Yuzhou [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States); Institute of Watershed Science and Environmental Ecology, Wenzhou Medical College, Wenzhou, 325000 (China); Zhang Xuyang [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States); Liu Xingmei [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States); Institute of Soil, Water and Environmental Science, Zhejiang University, Hangzhou 310029 (China); Ficklin, Darren [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States); Zhang Minghua [Department of Land, Air and Water Resources, University of California, Davis, CA 95616 (United States); Institute of Watershed Science and Environmental Ecology, Wenzhou Medical College, Wenzhou, 325000 (China)], E-mail: mhzhang@ucdavis.edu

2008-12-15

The hydrology, sediment, and pesticide transport components of the Soil and Water Assessment Tool (SWAT) were evaluated on the northern San Joaquin Valley watershed of California. The Nash-Sutcliffe coefficients for monthly stream flow and sediment load ranged from 0.49 to 0.99 over the watershed during the study period of 1992-2005. The calibrated SWAT model was applied to simulate fate and transport processes of two organophosphate pesticides of diazinon and chlorpyrifos at watershed scale. The model generated satisfactory predictions of dissolved pesticide loads relative to the monitoring data. The model also showed great success in capturing spatial patterns of dissolved diazinon and chlorpyrifos loads according to the soil properties and landscape morphology over the large agricultural watershed. This study indicated that curve number was the major factor influencing the hydrology while pesticide fate and transport were mainly affected by surface runoff and pesticide application and in the study area. - Major factors governing the instream loads of organophosphate pesticides are magnitude and timing of surface runoff and pesticide application.

Dynamic modeling of organophosphate pesticide load in surface water in the northern San Joaquin Valley watershed of California

International Nuclear Information System (INIS)

Luo Yuzhou; Zhang Xuyang; Liu Xingmei; Ficklin, Darren; Zhang Minghua

2008-01-01

The hydrology, sediment, and pesticide transport components of the Soil and Water Assessment Tool (SWAT) were evaluated on the northern San Joaquin Valley watershed of California. The Nash-Sutcliffe coefficients for monthly stream flow and sediment load ranged from 0.49 to 0.99 over the watershed during the study period of 1992-2005. The calibrated SWAT model was applied to simulate fate and transport processes of two organophosphate pesticides of diazinon and chlorpyrifos at watershed scale. The model generated satisfactory predictions of dissolved pesticide loads relative to the monitoring data. The model also showed great success in capturing spatial patterns of dissolved diazinon and chlorpyrifos loads according to the soil properties and landscape morphology over the large agricultural watershed. This study indicated that curve number was the major factor influencing the hydrology while pesticide fate and transport were mainly affected by surface runoff and pesticide application and in the study area. - Major factors governing the instream loads of organophosphate pesticides are magnitude and timing of surface runoff and pesticide application

78 FR 39315 - Notice of Availability of the Draft Environmental Impact Statement and Notice of Public Workshops...

Science.gov (United States)

2013-07-01

...The Bureau of Reclamation has made available for public review and comment the Draft Environmental Impact Statement (DEIS) for the Shasta Lake Water Resources Investigation (SLWRI). The purpose of the proposed action is to improve operational flexibility of the Sacramento-San Joaquin Delta watershed system by modifying the existing Shasta Dam and Reservoir to meet specified objectives. Primary objectives are to increase the survival of anadromous fish populations in the upper Sacramento River and increase water supply and water supply reliability. Secondary planning objectives are to: conserve, restore, and enhance ecosystem resources in the primary study area; reduce flood damage along the Sacramento River; develop additional hydropower generation capabilities; maintain and increase recreation opportunities; and maintain or improve water quality conditions in the Sacramento River downstream from Shasta Dam and in the Sacramento-San Joaquin Delta.

Delta smelt: Life history and decline of a once abundant species in the San Francisco Estuary

Science.gov (United States)

Moyle, Peter B.; Brown, Larry R.; Durand, John R; Hobbs, James A.

2016-01-01

This paper reviews what has been learned about Delta Smelt and its status since the publication of The State of Bay-Delta Science, 2008 (Healey et al. 2008). The Delta Smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain the population. As a listed species living in the central node of California’s water supply system, Delta Smelt has been the focus of a large research effort to understand causes of decline and identify ways to recover the species. Since 2008, a remarkable record of innovative research on Delta Smelt has been achieved, which is summarized here. Unfortunately, research has not prevented the smelt’s continued decline, which is the result of multiple, interacting factors. A major driver of decline is change to the Delta ecosystem from water exports, resulting in reduced outflows and high levels of entrainment in the large pumps of the South Delta. Invasions of alien species, encouraged by environmental change, have also played a contributing role in the decline. Severe drought effects have pushed Delta Smelt to record low levels in 2014–2015. The rapid decline of the species and failure of recovery efforts demonstrate an inability to manage the Delta for the “co-equal goals” of maintaining a healthy ecosystem and providing a reliable water supply for Californians. Diverse and substantial management actions are needed to preserve Delta Smelt.

Phenology of spotted wing drosophila in the San Joaquin Valley varies by season, crop and nearby vegetation

Directory of Open Access Journals (Sweden)

David R. Haviland

2016-01-01

Full Text Available The spotted wing drosophila, first detected in California in 2008, has become a major insect pest in caneberries and sweet cherries, causing commercial crop losses. Managing it is challenging because it has many other hosts, including riparian and backyard fruit plantings, and it increases rapidly, with generations overlapping one another. In our study we monitored trap captures in two parts of the San Joaquin Valley, within sweet cherry orchards and in nearby locations. Captures of adult flies showed two main periods of activity — spring and fall — and low captures in the winter (except for citrus and evergreen riparian areas and summer. On many occasions during the year, trap captures were higher outside of the cherry orchards than within them. Additionally, early in the season, when decisions about control programs are being made, the sex ratio of captured flies in cherries was strongly female-biased. The results suggest that during the weeks leading up to harvest growers should experiment by placing traps in different environments surrounding their orchards to determine SWD activity and potential pest pressure locally, and monitor for both male and female flies.

The ammonium nitrate particle equivalent of NOx emissions for wintertime conditions in Central California's San Joaquin Valley

International Nuclear Information System (INIS)

Stockwell, W.R.; Watson, J.G.; Robinson, N.F.; Sylte, W.W.

2000-01-01

A new method has been developed to assess the aerosol particle formation reactivity of nitrogen oxide (NO x ) emissions. The method involves using a photochemical box model with gas-phase photochemistry, aerosol production and deposition to calculate the ammonium nitrate particle equivalent of NO x emissions. The yields of ammonium nitrate particles used in the box model were determined from parametric simulations made with an equilibrium model that calculated the fraction of nitric acid that reacts to produce ammonium nitrate from the temperature, relative humidity and ammonium-to-nitrate ratios. For the wintertime conditions of emissions and meteorology in the San Joaquin Valley of central California, approximately 80% of the moles of nitric acid produced was found to be in the particulate nitrate phase and about 33% of the moles of emitted NO x was converted to particulate nitrate. The particle equivalent of NO x emissions was found to be on the order of 0.6 g of ammonium nitrate for each gram of NO x emitted (the mass of NO x calculated as NO 2 ). This estimate is in reasonable agreement with an analysis of field measurements made in central California. (author)

Climate change and the Delta

Science.gov (United States)

Dettinger, Michael; Anderson, Jamie; Anderson, Michael L.; Brown, Larry R.; Cayan, Daniel; Maurer, Edwin P.

2016-01-01

Anthropogenic climate change amounts to a rapidly approaching, “new” stressor in the Sacramento–San Joaquin Delta system. In response to California’s extreme natural hydroclimatic variability, complex water-management systems have been developed, even as the Delta’s natural ecosystems have been largely devastated. Climate change is projected to challenge these management and ecological systems in different ways that are characterized by different levels of uncertainty. For example, there is high certainty that climate will warm by about 2°C more (than late-20th-century averages) by mid-century and about 4°C by end of century, if greenhouse-gas emissions continue their current rates of acceleration. Future precipitation changes are much less certain, with as many climate models projecting wetter conditions as drier. However, the same projections agree that precipitation will be more intense when storms do arrive, even as more dry days will separate storms. Warmer temperatures will likely enhance evaporative demands and raise water temperatures. Consequently, climate change is projected to yield both more extreme flood risks and greater drought risks. Sea level rise (SLR) during the 20th century was about 22cm, and is projected to increase by at least 3-fold this century. SLR together with land subsidence threatens the Delta with greater vulnerabilities to inundation and salinity intrusion. Effects on the Delta ecosystem that are traceable to warming include SLR, reduced snowpack, earlier snowmelt and larger storm-driven streamflows, warmer and longer summers, warmer summer water temperatures, and water-quality changes. These changes and their uncertainties will challenge the operations of water projects and uses throughout the Delta’s watershed and delivery areas. Although the effects of climate change on Delta ecosystems may be profound, the end results are difficult to predict, except that native species will fare worse than invaders. Successful

1995 Integrated Monitoring Study: Fog measurements in the Northern San Joaquin Valley - preliminary results

Energy Technology Data Exchange (ETDEWEB)

Collett, J. Jr.; Bator, A.; Sherman, D.E. [Colorado State Univ., Fort Collins, CO (United States)] [and others

1996-12-31

Vertical gradients in fog chemistry and physics were measured from a 430 m television broadcast tower in the northern San Joaquin Valley near Walnut Grove, California. Fog was collected on the ground and at two elevations on the tower using Caltech Active Strand Cloudwater Collectors Version 2 (CASCC2). Work was conducted as part of the 1995 Integrated Monitoring Study (IMS95). Results will be used to evaluate the need to make measurements aloft in future regional studies of fog processing of atmospheric particles and for testing whether vertically resolved fog models provide realistic simulations of fog physics and chemistry above the ground. Two fog/low cloud events were sampled during the tower study. Preliminary results show concentrations of major species in the fogwater typically decreasing with altitude, while liquid water contents increase. Fogwater loadings of major species, the total amount of a species in the aqueous phase per unit air volume, were observed to increase with altitude. Major species concentrations were typically quite stable at a given elevation, while significant decreases were observed over time in liquid water content. Fogwater concentrations of soluble hydroperoxides were highest near the surface and increased with time after sunrise and were observed to coexist in the high pH fog with S(IV). Time lapse video footage of the top of the fog/cloud layer revealed a very dynamic interface, suggesting entrainment of material from the clear air into the fog/cloud may be significant. 12 refs., 7 figs.

Potential for Increased Mercury Accumulation in the Estuary Food Web

Directory of Open Access Journals (Sweden)

Jay A Davis

2003-10-01

Full Text Available Present concentrations of mercury in large portions of San Francisco Bay (Bay, the Sacramento-San Joaquin Delta (Delta, and the Sacramento and San Joaquin rivers are high enough to warrant concern for the health of humans and wildlife. Large scale tidal wetland restoration is currently under consideration as a means of increasing populations of fish species of concern. Tidal wetland restoration activities may lead to increased concentrations of mercury in the estuarine food web and exacerbate the existing mercury problem. This paper evaluates our present ability to predict the local and regional effects of restoration actions on mercury accumulation in aquatic food webs. A sport fish consumption advisory is in place for the Bay, and an advisory is under consideration for the Delta and lower Sacramento and San Joaquin rivers. Mercury concentrations in eggs of several water bird species from the Bay have exceeded the lowest observed effect level. A variety of mercury sources, largely related to historic mercury and gold mining, is present in the watershed and has created a spatially heterogeneous distribution of mercury in the Bay-Delta Estuary. Mercury exists in the environment in a variety of forms and has a complex biogeochemical cycle. The most hazardous form, methylmercury, is produced at a relatively high rate in wetlands and newly flooded aquatic habitats. It is likely that distinct spatial variation on multiple spatial scales exists in net methylmercury production in Bay-Delta tidal wetlands, including variation within each tidal wetland, among tidal wetlands in the same region, and among tidal wetlands in different regions. Understanding this spatial variation and its underlying causes will allow environmental managers to minimize the negative effects of mercury bioaccumulation as a result of restoration activities. Actions needed to reduce the uncertainty associated with this issue include a long term, multifaceted research effort, long

Inhabiting the Delta: A Landscape Approach to Transformative Socio-Ecological Restoration

Directory of Open Access Journals (Sweden)

Brett Milligan

2017-09-01

Full Text Available doi: https://doi.org/10.15447/sfews.2017v15iss3art3Current legislation and plans for the Sacramento–San Joaquin Delta (Delta call for large-scale restoration of aquatic and terrestrial habitats, which will require significant changes in waterways, land uses, and cultural patterns. These re-made landscapes will be subject to a variety of new human uses, which Delta planning and adaptive management literature has yet to adequately consider. Failing to account for human uses and evolving place values can lead to diminished performance and public support for Delta restoration efforts. Our empirical study examined restored and naturalized Delta landscapes using an integrative landscape approach that seeks to reconcile multiple goals and land-use agendas that span ecological, social, economic, and political domains. The research design consisted of six overlapping methods that included a planning, policy, and law review specific to the Delta; surveys and interviews with approximately 100 land managers, scientists, land-owners, law-enforcement personnel, agency representatives, and Delta residents; nine case studies of restored and naturalized delta landscapes; GIS mapping; and extensive field work. Findings derived from the synthesis of these methods show that human uses of the Delta’s re-wilded landscapes are diverse and pervasive. Given the infrastructural and urbanized context of the region, these environments are subject to multiple and sometimes conflicting uses, perceptions, and place values. Though these myriad uses cannot be fully predicted or controlled (nor should they be, findings showed that more proactive and inclusive planning for human uses can encourage or discourage particular uses while also building constituency, support, and active engagement in ecological restoration efforts. We conclude that reconciling human uses with ecological recovery in the Delta will require a more localized, multi-functional, and creative approach to

Recent scientific advances and their implications for sand management near San Francisco, California: the influences of the ebb tidal delta

Science.gov (United States)

Hanes, Daniel M.; Barnard, Patrick L.; Dallas, Kate; Elias, Edwin; Erikson, Li H.; Eshleman, Jodi; Hansen, Jeff; Hsu, Tian Jian; Shi, Fengyan

2011-01-01

Recent research in the San Francisco, California, U.S.A., coastal region has identified the importance of the ebb tidal delta to coastal processes. A process-based numerical model is found to qualitatively reproduce the equilibrium size and shape of the delta. The ebb tidal delta itself has been contracting over the past century, and the numerical model is applied to investigate the sensitivity of the delta to changes in forcing conditions. The large ebb tidal delta has a strong influence upon regional coastal processes. The prominent bathymetry of the ebb tidal delta protects some of the coast from extreme storm waves, but the delta also focuses wave energy toward the central and southern portions of Ocean Beach. Wave focusing likely contributes to a chronic erosion problem at the southern end of Ocean Beach. The ebb tidal delta in combination with non-linear waves provides a potential cross-shore sediment transport pathway that probably supplies sediment to Ocean Beach.

Sedimentological and Micropaleontological Characteristics of the 2015 Hurricane Joaquin Deposit and their Implications for Long-Term Records of Storms and Tsunamis Impacting the Caribbean

Science.gov (United States)

Kosciuch, T. J.; Pilarczyk, J.; Reinhardt, E. G.; Mauviel, A.; Aucoin, C. D.

2017-12-01

The uncertainty of extreme wave events in the Caribbean was highlighted in October 2015 when Hurricane Joaquin tracked through, or near, several islands (e.g., Bahamas, Haiti, Turks and Caicos) as a Category 4 storm. The short observational record of landfalling hurricanes is insufficient in preparing many of these islands for such a rare, intense storm. Examining the sediments deposited by recent landfalling hurricanes assists the understanding of the long-term spatial and temporal variations in storm frequency and intensity. However, the interpretation of prehistoric hurricane deposits in the Caribbean is complicated by the possibility of tsunami deposits (e.g., Puerto Rico Trench, 1755 Lisbon Tsunami), which are similar in composition and difficult to differentiate from storm sediments. To circumvent this problem, we describe the microfossil and sedimentary characteristics of a modern storm analogue, the Hurricane Joaquin deposit, from San Salvador Island in the Bahamas and use it as a basis for interpreting a series of 10 anomalous sand deposits found in a coastal pond. San Salvador is a small (160 km2) island in the Bahamas with a history of landfalling hurricanes and tsunamis. On 4 October 2015, Hurricane Joaquin came within 7 km of San Salvador, inundating most of its coastline and depositing two distinct layers: a sand layer and a boulder layer. The sand layer was 12 to 104 cm thick, extended 135 m inland, and consisted of fine to medium sand. The sand layer contained high abundances of foraminifera, including Homotrema rubra, a foraminifer that lives on the reef and is detached by large waves. The presence of well-preserved fragments of Homotrema within the Joaquin deposit suggests transport from the reef and rapid burial. The boulder layer included large clasts (30 to 200 cm in length) that were imbricated perpendicular to the shoreline and extended 135 m inland. The boulder layer was more laterally extensive (1020 m) than the sand layer (110 m). The

Water savings from reduced alfalfa cropping in California's Upper San Joaquin Valley

Science.gov (United States)

Singh, K. K.; Gray, J.

2017-12-01

Water and food and forage security are inextricably linked. In fact, 90% of global freshwater is consumed for food production. Food demand increases as populations grow and diets change, making water increasingly scarce. This tension is particularly acute, contentious, and popularly appreciated in California's Central Valley, which is one of the most important non-grain cropping areas in the United States. While the water-intensive production of tree nuts like almonds and pistachios has received the most popular attention, it is California's nation-leading alfalfa production that consumes the most water. Alfalfa, the "Queen of Forages" is the preferred feedstock for California's prodigious dairy industry. It is grown year-round, and single fields can be harvested more than four times a year; a practice which can require in excess of 1.5 m of irrigation water. Given the water scarcity in the region, the production of alfalfa is under increasing scrutiny with respect to long-term sustainability. However, the potential water savings associated with alternative crops, and various levels of alfalfa replacement have not been quantified. Here, we address that knowledge gap by simulating the ecohydrology of the Upper San Joaquin's cropping system under various scenarios of alfalfa crop replacement with crops of comparable economic value. Specifically, we use the SWAT model to evaluate the water savings that would be realized at 33%, 66%, and 100% alfalfa replacement with economically comparable, but more water efficient crops such as tomatoes. Our results provide an important quantification of the potential water savings under alternative cropping systems that, importantly, also addresses the economic concerns of farmers. Results like these provide critical guidance to farmers and land/water decision makers as they plan for a more sustainable and productive agricultural future.

Documentation of a groundwater flow model (SJRRPGW) for the San Joaquin River Restoration Program study area, California

Science.gov (United States)

Traum, Jonathan A.; Phillips, Steven P.; Bennett, George L.; Zamora, Celia; Metzger, Loren F.

2014-01-01

To better understand the potential effects of restoration flows on existing drainage problems, anticipated as a result of the San Joaquin River Restoration Program (SJRRP), the U.S. Geological Survey (USGS), in cooperation with the U.S. Bureau of Reclamation (Reclamation), developed a groundwater flow model (SJRRPGW) of the SJRRP study area that is within 5 miles of the San Joaquin River and adjacent bypass system from Friant Dam to the Merced River. The primary goal of the SJRRP is to reestablish the natural ecology of the river to a degree that restores salmon and other fish populations. Increased flows in the river, particularly during the spring salmon run, are a key component of the restoration effort. A potential consequence of these increased river flows is the exacerbation of existing irrigation drainage problems along a section of the river between Mendota and the confluence with the Merced River. Historically, this reach typically was underlain by a water table within 10 feet of the land surface, thus requiring careful irrigation management and (or) artificial drainage to maintain crop health. The SJRRPGW is designed to meet the short-term needs of the SJRRP; future versions of the model may incorporate potential enhancements, several of which are identified in this report. The SJRRPGW was constructed using the USGS groundwater flow model MODFLOW and was built on the framework of the USGS Central Valley Hydrologic Model (CVHM) within which the SJRRPGW model domain is embedded. The Farm Process (FMP2) was used to simulate the supply and demand components of irrigated agriculture. The Streamflow-Routing Package (SFR2) was used to simulate the streams and bypasses and their interaction with the aquifer system. The 1,300-square mile study area was subdivided into 0.25-mile by 0.25-mile cells. The sediment texture of the aquifer system, which was used to distribute hydraulic properties by model cell, was refined from that used in the CVHM to better represent

Physically Based Modeling of Delta Island Consumptive Use: Fabian Tract and Staten Island, California

Directory of Open Access Journals (Sweden)

Lucas J. Siegfried

2014-12-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2014v12iss4art2Water use estimation is central to managing most water problems. To better understand water use in California’s Sacramento–San Joaquin Delta, a collaborative, integrated approach was used to predict Delta island diversion, consumption, and return of water on a more detailed temporal and spatial resolution. Fabian Tract and Staten Island were selected for this pilot study based on available data and island accessibility. Historical diversion and return location data, water rights claims, LiDAR digital elevation model data, and Google Earth were used to predict island diversion and return locations, which were tested and improved through ground-truthing. Soil and land-use characteristics as well as weather data were incorporated with the Integrated Water Flow Model Demand Calculator to estimate water use and runoff returns from input agricultural lands. For modeling, the islands were divided into grid cells forming subregions, representing fields, levees, ditches, and roads. The subregions were joined hydrographically to form diversion and return watersheds related to return and diversion locations. Diversions and returns were limited by physical capacities. Differences between initial model and measured results point to the importance of seepage into deeply subsided islands. The capabilities of the models presented far exceeded current knowledge of agricultural practices within the Delta, demonstrating the need for more data collection to enable improvements upon current Delta Island Consumptive Use estimates.

Blood characteristics of San Joaquin kit fox (Vulpes velox macrotis) at Camp Roberts Army National Guard Training Site, California

Energy Technology Data Exchange (ETDEWEB)

Standley, W.G.; McCue, P.M.

1992-09-01

Hematology, serum chemistry, and prevalence of antibodies against selected, pathogens in a San Joaquin kit fox population (Vulpes velox macrotis) were investigated at Camp Roberts Army National Guard Training Site, California, in 1989 and 1990. Samples from 18 (10 female, 8 male) adult kit foxes were used to establish normal hematology and serum chemistry values for this population. Average values were all within the normal ranges reported for kit foxes in other locations. Three hematology parameters had significant differences between male and female values; males had higher total white blood cell and neutrophil counts, and lower lymphocyte counts. There were no significant differences between serum chemistry values from male and female foxes. Prevalence of antibodies was determined from serum samples from 47 (26 female, 21 male) adult kit foxes and eight (4 female, 4 male) juveniles. Antibodies were detected against five of the eight pathogens tested: canine parvovirus, Toxoplasma gondii Leptospira interrogans, canine distemper virus, and canine hepatitis virus. Antibodies were not detected against Brucella, canis, Coccidioides immitis, or Yersinia pestis.

Remote Sensing Soil Salinity Map for the San Joaquin Vally, California

Science.gov (United States)

Scudiero, E.; Skaggs, T. H.; Anderson, R. G.; Corwin, D. L.

2015-12-01

Soil salinization is a major natural hazard to worldwide agriculture. We present a remote imagery approach that maps salinity within a range (i.e., salinities less than 20 dS m-1, when measured as the electrical conductivity of the soil saturation extract), accuracy, and resolution most relevant to agriculture. A case study is presented for the western San Joaquin Valley (WSJV), California, USA (~870,000 ha of farmland) using multi-year Landsat 7 ETM+ canopy reflectance and the Canopy Response Salinity Index (CRSI). Highly detailed salinity maps for 22 fields (542 ha) established from apparent soil electrical conductivity directed sampling were used as ground-truth (sampled in 2013), totaling over 5000 pixels (30×30 m) with salinity values in the range of 0 to 35.2 dS m-1. Multi-year maximum values of CRSI were used to model soil salinity. In addition, soil type, elevation, meteorological data, and crop type were evaluated as covariates. The fitted model (R2=0.73) was validated: i) with a spatial k-folds (i.e., leave-one-field-out) cross-validation (R2=0.61), ii) versus salinity data from three independent fields (sampled in 2013 and 2014), and iii) by determining the accuracy of the qualitative classification of white crusted land as extremely-saline soils. The effect of land use change is evaluated over 2396 ha in the Broadview Water District from a comparison of salinity mapped in 1991 with salinity predicted in 2013 from the fitted model. From 1991 to 2013 salinity increased significantly over the selected study site, bringing attention to potential negative effects on soil quality of shifting from irrigated agriculture to fallow-land. This is cause for concern since over the 3 years of California's drought (2010-2013) the fallow land in the WSJV increased from 12.7% to 21.6%, due to drastic reduction in water allocations to farmers.

Agricultural Chemical Concentrations and Loads in Rivers Draining the Central Valley, California, to the San Francisco Bay-Delta Estuary: Before and During an Extended Drought

Science.gov (United States)

Domagalski, J. L.

2016-12-01

Drought or near drought conditions have occurred in California since 2012. Although some parts of the State received near normal precipitation in water year 2016, other locations were still below average. Extended drought can impact aquatic organisms in a variety of ways because of decreased flows and elevated water temperature. However, lower precipitation and availability of irrigation water may limit subsequent runoff, resulting in reduced concentrations and loads of certain environmental toxicants, such as pesticides and ammonia, thereby limiting their toxic effects. In this study, funded by the U.S. Geological Survey National Water Quality Program, the occurrence of 227 pesticides and degradation products, and nutrients was assessed before and during this current drought in the two largest rivers draining to the San Francisco Bay: the Sacramento and San Joaquin Rivers. The watersheds of both rivers include substantial agricultural and urban land use. Herbicides, insecticides, fungicides, and ammonia were detected throughout the study (2010 to 2016) and models of daily concentration using the seasonal wave model (rloadest) were formulated to assess the amount of time that concentrations may have exceeded benchmark levels known to be toxic to aquatic organisms. Frequently detected pesticides included the fungicide azoxystrobin, herbicides or their degradation products such as diuron, glyphosate, and metolachlor, and insecticides such as imidacloprid. Compounds that are transported primarily by surface runoff generally showed decreasing concentrations as the drought progressed, especially in the San Joaquin River. Compounds mainly transported by groundwater, as indicated by seasonal concentration profiles, had more stable concentrations in the rivers. Mass loads to the Bay all decreased, as expected, because of the lower river discharge. When compared to aquatic-life benchmarks, modeled concentrations indicated that individual compounds were not contributing to

Concentrations of chlorinated organic compounds in biota and bed sediment in streams of the San Joaquin Valley, California

Science.gov (United States)

Brown, L.R.

1997-01-01

Samples of resident biota and bed sediments were collected in 1992 from 18 sites on or near the floor of the San Joaquin Valley, California, for analysis of 33 organochlorine compounds. The sites were divided into five groups on the basis of physiographic region and land use. Ten compounds were detected in tissue, and 15 compounds were detected in bed sediment. The most frequently detected compound in both media was p,p'-DDE. Concentrations of ??DDT (sum of o,p'- and p, p' forms of DDD, DDE, and DDT) were statistically different among groups of sites for both tissue and sediment (Kruskal- Wallis, p TOC) normalized concentrations were significantly correlated with specific conductance and pH (p TOC in sediment. The results of this study did not indicate any clear advantage to using either bed sediment or tissues in studies of organochlorine chemicals in the environment. Some guidelines for protection of fish and wildlife were exceeded. Concentrations of organochlorine chemicals in biota, and perhaps sediment, have declined from concentrations measured in the 1970s and 1980s, but remain high compared to other regions of the United States.

Real-Time Water Quality Monitoring and Habitat Assessment in theSan Luis National Wildlife Refuge

Energy Technology Data Exchange (ETDEWEB)

Quinn, Nigel W.T.; Hanlon, Jeremy S.; Burns, Josephine R.; Stromayer, Karl A.K.; Jordan, Brandon M.; Ennis, Mike J.; Woolington,Dennis W.

2005-08-28

The project report describes a two year experiment to control wetland drainage to the San Joaquin River of California from the San Luis National Wildlife Refuge using a decision support system for real-time water quality management. This system required the installation and operation of one inlet and three drainage flow and water quality monitoring stations which allowed a simple mass balance model to be developed of the seasonally managed wetlands in the study area. Remote sensing methods were developed to document long-term trends in wetland moist soil vegetation and soil salinity in response to management options such as delaying the initiation of seasonal wetland drainage. These environmental management tools provide wetland managers with some of the tools necessary to improve salinity conditions in the San Joaquin River and improve compliance with State mandated salinity objectives without inflicting long-term harm on the wild fowl habitat resource.

SRTM Perspective View with Landsat Overlay: Mt. Pinos and San Joaquin Valley, California

Science.gov (United States)

2000-01-01

Ask any astronomer where the best stargazing site in Southern California is, and chances are they'll say Mt. Pinos. In this perspective view generated from SRTM elevation data the snow-capped peak is seen rising to an elevation of 2,692 meters (8,831 feet), in stark contrast to the flat agricultural fields of the San Joaquin valley seen in the foreground. Below the summit, but still well away from city lights, the Mt. Pinos parking lot at 2,468 meters (8,100 feet) is a popular viewing area for both amateur and professional astronomers and astro-photographers. For visualization purposes, topographic heights displayed in this image are exaggerated two times.The elevation data used in this image was acquired by SRTM aboard the Space Shuttle Endeavour, launched on February 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on Endeavour in 1994. SRTM was designed to collect three-dimensional measurements of Earth's land surface. To collect the 3-D SRTM data, engineers added a mast 60 meters (about 200 feet)long, installed additional C-band and X-band antennas, and improved tracking and navigation devices. The mission is a cooperative project between the NASA, the National Imagery and Mapping Agency (NIMA) of the U.S. Department of Defense, and the German and Italian space agencies. It is managed by NASA's Jet Propulsion Laboratory, Pasadena, Calif., for NASA's Earth Science Enterprise,Washington, D.C. JPL is a division of the California Institute of Technology in Pasadena.Distance to Horizon: 176 kilometers (109 miles) Location: 34.83 deg. North lat., 119.25 deg. West lon. View: Toward the Southwest Date Acquired: February 16, 2000 SRTM, December 14, 1984 Landsat

Social Disparities in Nitrate-Contaminated Drinking Water in California’s San Joaquin Valley

Science.gov (United States)

Morello-Frosch, Rachel; Hubbard, Alan; Ray, Isha

2011-01-01

Background: Research on drinking water in the United States has rarely examined disproportionate exposures to contaminants faced by low-income and minority communities. This study analyzes the relationship between nitrate concentrations in community water systems (CWSs) and the racial/ethnic and socioeconomic characteristics of customers. Objectives: We hypothesized that CWSs in California’s San Joaquin Valley that serve a higher proportion of minority or residents of lower socioeconomic status have higher nitrate levels and that these disparities are greater among smaller drinking water systems. Methods: We used water quality monitoring data sets (1999–2001) to estimate nitrate levels in CWSs, and source location and census block group data to estimate customer demographics. Our linear regression model included 327 CWSs and reported robust standard errors clustered at the CWS level. Our adjusted model controlled for demographics and water system characteristics and stratified by CWS size. Results: Percent Latino was associated with a 0.04-mg nitrate-ion (NO3)/L increase in a CWS’s estimated NO3 concentration [95% confidence interval (CI), –0.08 to 0.16], and rate of home ownership was associated with a 0.16-mg NO3/L decrease (95% CI, –0.32 to 0.002). Among smaller systems, the percentage of Latinos and of homeownership was associated with an estimated increase of 0.44 mg NO3/L (95% CI, 0.03–0.84) and a decrease of 0.15 mg NO3/L (95% CI, –0.64 to 0.33), respectively. Conclusions: Our findings suggest that in smaller water systems, CWSs serving larger percentages of Latinos and renters receive drinking water with higher nitrate levels. This suggests an environmental inequity in drinking water quality. PMID:21642046

Summary and Synthesis of Mercury Studies in the Cache Creek Watershed, California, 2000-01

Science.gov (United States)

Domagalski, Joseph L.; Slotton, Darell G.; Alpers, Charles N.; Suchanek, Thomas H.; Churchill, Ronald; Bloom, Nicolas; Ayers, Shaun M.; Clinkenbeard, John

2004-01-01

This report summarizes the principal findings of the Cache Creek, California, components of a project funded by the CALFED Bay?Delta Program entitled 'An Assessment of Ecological and Human Health Impacts of Mercury in the Bay?Delta Watershed.' A companion report summarizes the key findings of other components of the project based in the San Francisco Bay and the Delta of the Sacramento and San Joaquin Rivers. These summary documents present the more important findings of the various studies in a format intended for a wide audience. For more in-depth, scientific presentation and discussion of the research, a series of detailed technical reports of the integrated mercury studies is available at the following website: .

A new seamless, high-resolution digital elevation model of the San Francisco Bay-Delta Estuary, California

Science.gov (United States)

Fregoso, Theresa A.; Wang, Rueen-Fang; Ateljevich, Eli; Jaffe, Bruce E.

2017-06-14

Climate change, sea-level rise, and human development have contributed to the changing geomorphology of the San Francisco Bay - Delta (Bay-Delta) Estuary system. The need to predict scenarios of change led to the development of a new seamless, high-resolution digital elevation model (DEM) of the Bay – Delta that can be used by modelers attempting to understand potential future changes to the estuary system. This report details the three phases of the creation of this DEM. The first phase took a bathymetric-only DEM created in 2005 by the U.S. Geological Survey (USGS), refined it with additional data, and identified areas that would benefit from new surveys. The second phase began a USGS collaboration with the California Department of Water Resources (DWR) that updated a 2012 DWR seamless bathymetric/topographic DEM of the Bay-Delta with input from the USGS and modifications to fit the specific needs of USGS modelers. The third phase took the work from phase 2 and expanded the coverage area in the north to include the Yolo Bypass up to the Fremont Weir, the Sacramento River up to Knights Landing, and the American River up to the Nimbus Dam, and added back in the elevations for interior islands. The constant evolution of the Bay-Delta will require continuous updates to the DEM of the Delta, and there still are areas with older data that would benefit from modern surveys. As a result, DWR plans to continue updating the DEM.

Reproduction of the San Joaquin kit fox (Vulpes velox macrotis) on Camp Roberts Army National Guard Training Site, California

International Nuclear Information System (INIS)

Spencer, K.A.; Berry, W.H.; Standley, W.G.; O'Farrell, T.P.

1992-09-01

The reproduction of a San Joaquin kit fox population (Vulpes velox macrotis) was investigated at Camp Roberts Army National Guard Training Site, California, from November 1988 through September 1991. Of 38 vixens radiocollared prior to parturition, 12 (32%) were successful in raising pups from conception to the point where pups were observed above ground. No yearling vixens were known tb be reproductively active. The mean litter size during 1989 - 1991 was 3.0 (n = 21, SE = 0.28) and ranged from one to six pups. Both the proportion of vixens successfully raising pups and the mean litter size observed at Camp Roberts during this study were lower than those reported at other locations. Sex ratios of kit fox pups were male biased two of the three years, but did not differ statistically from 1:1 throughout the study. Whelping was estimated to occur between February 15 and March 5. Results of this study support previous reports that kit foxes are primarily monogamous, although one case of polygamy may have occurred. Both the proportion of dispersing radiocollared juveniles (26%) and the mean dispersal distance (5.9 km) of juveniles at Camp Roberts appeared low compared to other locations

Integrated risk assessment for the natomas basin (California) analysis of loss of life and emergency management for floods

NARCIS (Netherlands)

Jonkman, S.N.; Hiel, L.A.; Bea, R.G.; Foster, H.; Tsioulou, A.; Arroyo, P.; Stallard, T.; Harris, L.

2012-01-01

This article assesses the risk to life for the Natomas Basin, a low-lying, rapidly urbanizing region in the Sacramento-San Joaquin Delta in California. Using an empirical method, the loss of life is determined for a flood (high water), seismic, and sunny-day levee breach scenario. The analysis

Temporal trends in concentrations of DBCP and nitrate in groundwater in the eastern San Joaquin Valley, California, USA

Science.gov (United States)

Burow, K.R.; Dubrovsky, N.M.; Shelton, James L.

2007-01-01

Temporal monitoring of the pesticide 1,2-dibromo-3-chloropropane (DBCP) and nitrate and indicators of mean groundwater age were used to evaluate the transport and fate of agricultural chemicals in groundwater and to predict the long-term effects in the regional aquifer system in the eastern San Joaquin Valley, California. Twenty monitoring wells were installed on a transect along an approximate groundwater flow path. Concentrations of DBCP and nitrate in the wells were compared to concentrations in regional areal monitoring networks. DBCP persists at concentrations above the US Environmental Protection Agency's maximum contaminant level (MCL) at depths of nearly 40 m below the water table, more than 25 years after it was banned. Nitrate concentrations above the MCL reached depths of more than 20 m below the water table. Because of the intensive pumping and irrigation recharge, vertical flow paths are dominant. High concentrations (above MCLs) in the shallow part of the regional aquifer system will likely move deeper in the system, affecting both domestic and public-supply wells. The large fraction of old water (unaffected by agricultural chemicals) in deep monitoring wells suggests that it could take decades for concentrations to reach MCLs in deep, long-screened public-supply wells, however. ?? Springer-Verlag 2007.

Handbook of Techniques and Guides for the Study of the San Francisco Bay-Delta-Estuary Complex, Part 2. Key to the Phytoplankton Phyla and Genera.

Science.gov (United States)

Helrich, Jane

Project MER (Marine Ecology Research) is aimed at improving environmental education in the San Francisco Bay Area schools. This document is the second of a series of guides designed to help students and teachers gather data concerning the San Francisco Bay-Delta-Estuary Complex and to organize these data to make a contribution to the literature of…

78 FR 28807 - Endangered and Threatened Species; Take of Anadromous Fish

Science.gov (United States)

2013-05-16

.../modifications: (1) Are applied for in good faith; (2) would not operate to the disadvantage of the listed... June 30. As traps are operated, data will be collected on fish abundance, trap operational status, and...- San Joaquin Delta, California. The primary objectives to which ESA- listed salmonids and SDPS green...

Availability of high-magnitude streamflow for groundwater banking in the Central Valley, California

Science.gov (United States)

Kocis, Tiffany N.; Dahlke, Helen E.

2017-08-01

California’s climate is characterized by the largest precipitation and streamflow variability observed within the conterminous US This, combined with chronic groundwater overdraft of 0.6-3.5 km3 yr-1, creates the need to identify additional surface water sources available for groundwater recharge using methods such as agricultural groundwater banking, aquifer storage and recovery, and spreading basins. High-magnitude streamflow, i.e. flow above the 90th percentile, that exceeds environmental flow requirements and current surface water allocations under California water rights, could be a viable source of surface water for groundwater banking. Here, we present a comprehensive analysis of the magnitude, frequency, duration and timing of high-magnitude streamflow (HMF) for 93 stream gauges covering the Sacramento, San Joaquin and Tulare basins in California. The results show that in an average year with HMF approximately 3.2 km3 of high-magnitude flow is exported from the entire Central Valley to the Sacramento-San Joaquin Delta often at times when environmental flow requirements of the Delta and major rivers are exceeded. High-magnitude flow occurs, on average, during 7 and 4.7 out of 10 years in the Sacramento River and the San Joaquin-Tulare Basins, respectively, from just a few storm events (5-7 1-day peak events) lasting for 25-30 days between November and April. The results suggest that there is sufficient unmanaged surface water physically available to mitigate long-term groundwater overdraft in the Central Valley.

Landscape scale controls on the vascular plant component of dissolved organic carbon across a freshwater delta

Science.gov (United States)

Eckard, Robert S.; Hernes, Peter J.; Bergamaschi, Brian A.; Stepanauskas, Ramunas; Kendall, Carol

2007-01-01

Lignin phenol concentrations and compositions were determined on dissolved organic carbon (DOC) extracts (XAD resins) within the Sacramento-San Joaquin River Delta (the Delta), the tidal freshwater portion of the San Francisco Bay Estuary, located in central California, USA. Fourteen stations were sampled, including the following habitats and land-use types: wetland, riverine, channelized waterway, open water, and island drains. Stations were sampled approximately seasonally from December, 1999 through May, 2001. DOC concentrations ranged from 1.3 mg L-1 within the Sacramento River to 39.9 mg L-1 at the outfall from an island drain (median 3.0 mg L-1), while lignin concentrations ranged from 3.0 μL-1 within the Sacramento River to 111 μL-1 at the outfall from an island drain (median 11.6 μL-1). Both DOC and lignin concentrations varied significantly among habitat/land-use types and among sampling stations. Carbon-normalized lignin yields ranged from 0.07 mg (100 mg OC)-1 at an island drain to 0.84 mg (100 mg OC)-1 for a wetland (median 0.36 mg (100 mg OC)-1), and also varied significantly among habitat/land-use types. A simple mass balance model indicated that the Delta acted as a source of lignin during late autumn through spring (10-83% increase) and a sink for lignin during summer and autumn (13-39% decrease). Endmember mixing models using S:V and C:V signatures of landscape scale features indicated strong temporal variation in sources of DOC export from the Delta, with riverine source signatures responsible for 50% of DOC in summer and winter, wetland signatures responsible for 40% of DOC in summer, winter, and late autumn, and island drains responsible for 40% of exported DOC in late autumn. A significant negative correlation was observed between carbon-normalized lignin yields and DOC bioavailability in two of the 14 sampling stations. This study is, to our knowledge, the first to describe organic vascular plant DOC sources at the level of localized

Isohaline position as a habitat indicator for estuarine populations

Science.gov (United States)

Jassby, Alan D.; Kimmerer, W.J.; Monismith, Stephen G.; Armor, C.; Cloern, James E.; Powell, T.M.; Vedlinski, Timothy J.

1995-01-01

Populations of native and introduced aquatic organisms in the San Francisco Bay/Sacramento-San Joaquin Delta Estuary ("Bay/Delta") have undergone significant declines over the past two decades. Decreasedriver inflow due to drought and increased freshwater diversion have contributed to the decline of atleast some populations. Effective management of the estuary's biological resources requires a sensitive indicatorof the response to freshwater inflow that has ecological significance, can be measured accurately and easily,and could be used as a "policy" variable to set standards for managing freshwater inflow. Positioning of the2% (grams of salt per kilogram of seawater) bottom salinity value along the axis of the estuary was examinedfor this purpose.

Covariance of bacterioplankton composition and environmental variables in a temperate delta system

Science.gov (United States)

Stepanauskas, R.; Moran, M.A.; Bergamaschi, B.A.; Hollibaugh, J.T.

2003-01-01

We examined seasonal and spatial variation in bacterioplankton composition in the Sacramento-San Joaquin River Delta (CA) using terminal restriction fragment length polymorphism (T-RFLP) analysis. Cloned 16S rRNA genes from this system were used for putative identification of taxa dominating the T-RFLP profiles. Both cloning and T-RFLP analysis indicated that Actinobacteria, Verrucomicrobia, Cytophaga-Flavobacterium and Proteobacteria were the most abundant bacterioplankton groups in the Delta. Despite the broad variety of sampled habitats (deep water channels, lakes, marshes, agricultural drains, freshwater and brackish areas), and the spatial and temporal differences in hydrology, temperature and water chemistry among the sampling campaigns, T-RFLP electropherograms from all samples were similar, indicating that the same bacterioplankton phylotypes dominated in the various habitats of the Delta throughout the year. However, principal component analysis (PCA) and partial least-squares regression (PLS) of T-RFLP profiles revealed consistent grouping of samples on a seasonal, but not a spatial, basis. ??-Proteobacteria related to Ralstonia, Actinobacteria related to Microthrix, and ??-Proteobacteria identical to the environmental Clone LD12 had the highest relative abundance in summer/fall T-RFLP profiles and were associated with low river flow, high pH, and a number of optical and chemical characteristics of dissolved organic carbon (DOC) indicative of an increased proportion of phytoplankton-produced organic material as opposed to allochthonous, terrestrially derived organic material. On the other hand, Geobacter-related ??-Proteobacteria showed a relative increase in abundance in T-RFLP analysis during winter/spring, and probably were washed out from watershed soils or sediment. Various phylotypes associated with the same phylogenetic division, based on tentative identification of T-RFLP fragments, exhibited diverse seasonal patterns, suggesting that ecological

Timber resource statistics for the San Joaquin and southern California resource areas.

Science.gov (United States)

Bruce Hiserote; Joel Moen; Charles L. Bolsinger

1986-01-01

This report is one of five that provide timber resource statistics for 57 of the 58 counties in California (San Francisco is excluded). This report presents statistics from a 1982-84 inventory of the timber resources of Alpine, Amador, Calaveras, Fresno, Imperial, Inyo, Kern, Kings, Los Angeles, Madera, Mariposa, Merced, Mono, Orange, Riverside, San Bernardino, San...

Nature of uranium contamination in the agricultural drainage water evaporation ponds of the San Joaquin Valley, California, USA

International Nuclear Information System (INIS)

Duff, M.C.; Amrhein, C.; Bradford, G.

1997-01-01

Evaporation ponds used for agricultural subsurface drainage water disposal in the Tulare Lake Bed (TLB) of the San Joaquin Valley, California, USA have elevated levels of U. Waterfowl which inhabit and forage the ponds and surrounding areas are threatened by exposure to U. The ponds, which receive irrigation drainage waters and seasonal rain, are subject to wetting and drying periods. The periods result in the accumulation of decaying algae and other organic material in surface sediments. Sediment and waters in the ponds were sampled to determine what factors control U solubility and sediment U concentrations. Data from a 1990 study conducted by Chilcott et al. in 1989 on the TLB ponds were used to help identify what factors may control U solubility. Pond sediment U concentrations decreased abruptly with depth and surface sediment U concentrations were related to dissolved Ca:HCO 3 ratios. Pond algal U bioaccumulation was favored in waters with high Ca:HCO 3 ratios, which had lower pH values and carbonate alkalinities than waters with low CA:HCO 3 ratios. Ponds with high salinities and high carbonate alkalinities contained the highest aqueous U concentrations relative to other TLB ponds. Sediment total organic carbon (TOC) was correlated with sediment U concentrations, suggesting that U is bound to organic matter. The source of TOC is most likely from algae deposition. (author)

Anthropogenic Methane Emissions in California's San Joaquin Valley: Characterizing Large Point Source Emitters

Science.gov (United States)

Hopkins, F. M.; Duren, R. M.; Miller, C. E.; Aubrey, A. D.; Falk, M.; Holland, L.; Hook, S. J.; Hulley, G. C.; Johnson, W. R.; Kuai, L.; Kuwayama, T.; Lin, J. C.; Thorpe, A. K.; Worden, J. R.; Lauvaux, T.; Jeong, S.; Fischer, M. L.

2015-12-01

Methane is an important atmospheric pollutant that contributes to global warming and tropospheric ozone production. Methane mitigation could reduce near term climate change and improve air quality, but is hindered by a lack of knowledge of anthropogenic methane sources. Recent work has shown that methane emissions are not evenly distributed in space, or across emission sources, suggesting that a large fraction of anthropogenic methane comes from a few "super-emitters." We studied the distribution of super-emitters in California's southern San Joaquin Valley, where elevated levels of atmospheric CH4 have also been observed from space. Here, we define super-emitters as methane plumes that could be reliably detected (i.e., plume observed more than once in the same location) under varying wind conditions by airborne thermal infrared remote sensing. The detection limit for this technique was determined to be 4.5 kg CH4 h-1 by a controlled release experiment, corresponding to column methane enhancement at the point of emissions greater than 20% above local background levels. We surveyed a major oil production field, and an area with a high concentration of large dairies using a variety of airborne and ground-based measurements. Repeated airborne surveys (n=4) with the Hyperspectral Thermal Emission Spectrometer revealed 28 persistent methane plumes emanating from oil field infrastructure, including tanks, wells, and processing facilities. The likelihood that a given source type was a super-emitter varied from roughly 1/3 for processing facilities to 1/3000 for oil wells. 11 persistent plumes were detected in the dairy area, and all were associated with wet manure management. The majority (11/14) of manure lagoons in the study area were super-emitters. Comparing to a California methane emissions inventory for the surveyed areas, we estimate that super-emitters comprise a minimum of 9% of inventoried dairy emissions, and 13% of inventoried oil emissions in this region.

September-March survival of female northern pintails radiotagged in San Joaquin Valley, California

Science.gov (United States)

Fleskes, J.P.; Jarvis, R.L.; Gilmer, D.S.

2002-01-01

To improve understanding of pintail ecology, we radiotagged 191 hatch-year (HY) and 228 after-hatch-year (AHY) female northern pintails (Anas acuta) in the San Joaquin Valley (SJV), and studied their survival throughout central California, USA, during September-March, 1991-1994. We used adjusted Akaike Information Criterion (AICc) values to contrast known-fate models and examine variation in survival rates relative to year, interval, wintering region (AJV, other central California), pintail age, body mass at capture, capture date, capture area, and radio type. The best-fitting model included only interval x year and age x body mass; the next 2 best-fitting models also included wintering region and capture date. Hunting caused 83% of the mortalities we observed, and survival was consistently lower during hunting than nonhunting intervals. Nonhunting and hunting mortality during early winter was highest during the 1991-1992 drought year. Early-winter survival improved during the study along with habitat conditions in the Grassland Ecological Area (EA), where most radiotagged pintails spent early winter. Survival was more closely related to body mass at capture for HY than AHY pintails, even after accounting for the later arrival (based on capture date) of HY pintails, suggesting HY pintails are less adept at improving their condition. Thus, productivity estimates based on harvest age ratios may be biased if relative vulnerability of HY and AHY pintails is assumed to be constant because fall body condition of pintails may vary greatly among years. Cumulative winter survival was 75.6% (95% CI = 68.3% to 81.7%) for AHY and 65.4% (56.7% to 73.1%) for HY female pintails. Daily odds of survival in the cotton-agriculture landscape of the SJV were -21.3% (-40.3% to +3.7%) lower than in the rice-agriculture landscape of the Sacramento Valley (SACV) and other central California areas. Higher hunting mortality may be 1 reason pintails have declined more in SJV than in SACV.

Joaquin Inigo-Golfin (1965-2011)

CERN Multimedia

2011-01-01

It is with immense sadness that we learned that Joaquin INIGO-GOLFIN passed away last week; until the very end we hoped that he would win the battle he so heroically fought. Joaquin was a very special person who left no one indifferent. His professional skills, warmth and openness were matched with a sense of humor that made him a friend and colleague “à part”.   Joaquin joined CERN in August 1992 to work in the Cooling and Ventilation Group where he spent almost all his professional career covering many disciplines and responsibilities: operations, installation and design. He was also responsible for the introduction of new technologies to CV, such as Computer Aided Design, and for the evaluation and adoption of Computational Fluid Dynamics, particularly for the analysis of complex thermal systems. The remarkable results Joaquin achieved through his work and strong technical competence made him the natural candidate to lead the design section responsible for all th...

Effects of military-authorized activities on the San Joaquin kit fox (Vulpes velox macrotis) at Camp Roberts Army National Guard Training Site, California

Energy Technology Data Exchange (ETDEWEB)

Berry, W.H.; Standley, W.G.; O`Farrell, T.P.; Kato, T.T.

1992-10-01

The effects of military-authorized activities on San Joaquin kit fox (Vulpes velox macrotis) were investigated at Camp Roberts Army National Guard Training Site from 1988 to 1991. Military-authorized activities included military training exercises, facilities maintenance, new construction, controlled burning, livestock grazing, and public-access hunting. Positive effects of the military included habitat preservation, preactivity surveys, and natural resources management practices designed to conserve kit foxes and their habitat. Perceived negative effects such as entrapment in dens, shootings during military exercises, and accidental poisoning were not observed. Foxes were observed in areas being used simultaneously by military units. Authorized activities were known to have caused the deaths of three of 52 radiocollared foxes recovered dead: one became entangled in concertina wire, one was believed shot by a hunter, and one was struck by a vehicle. Entanglement in communication wire may have contributed to the death of another radiocollared fox that was killed by a predator. Approximately 10% of kit fox dens encountered showed evidence of vehicle traffic, but denning sites did not appear to be a limiting factor for kit foxes.

Data related uncertainty in near-surface vulnerability assessments for agrochemicals in the San Joaquin Valley.

Science.gov (United States)

Loague, Keith; Blanke, James S; Mills, Melissa B; Diaz-Diaz, Ricardo; Corwin, Dennis L

2012-01-01

Precious groundwater resources across the United States have been contaminated due to decades-long nonpoint-source applications of agricultural chemicals. Assessing the impact of past, ongoing, and future chemical applications for large-scale agriculture operations is timely for designing best-management practices to prevent subsurface pollution. Presented here are the results from a series of regional-scale vulnerability assessments for the San Joaquin Valley (SJV). Two relatively simple indices, the retardation and attenuation factors, are used to estimate near-surface vulnerabilities based on the chemical properties of 32 pesticides and the variability of both soil characteristics and recharge rates across the SJV. The uncertainties inherit to these assessments, derived from the uncertainties within the chemical and soil data bases, are estimated using first-order analyses. The results are used to screen and rank the chemicals based on mobility and leaching potential, without and with consideration of data-related uncertainties. Chemicals of historic high visibility in the SJV (e.g., atrazine, DBCP [dibromochloropropane], ethylene dibromide, and simazine) are ranked in the top half of those considered. Vulnerability maps generated for atrazine and DBCP, featured for their legacy status in the study area, clearly illustrate variations within and across the assessments. For example, the leaching potential is greater for DBCP than for atrazine, the leaching potential for DBCP is greater for the spatially variable recharge values than for the average recharge rate, and the leaching potentials for both DBCP and atrazine are greater for the annual recharge estimates than for the monthly recharge estimates. The data-related uncertainties identified in this study can be significant, targeting opportunities for improving future vulnerability assessments. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America

Air Pollution, Neighbourhood Socioeconomic Factors, and Neural Tube Defects in the San Joaquin Valley of California.

Science.gov (United States)

Padula, Amy M; Yang, Wei; Carmichael, Suzan L; Tager, Ira B; Lurmann, Frederick; Hammond, S Katharine; Shaw, Gary M

2015-11-01

Environmental pollutants and neighbourhood socioeconomic factors have been associated with neural tube defects, but the potential impact of interaction between ambient air pollution and neighbourhood socioeconomic factors on the risks of neural tube defects is not well understood. We used data from the California Center of the National Birth Defects Study and the Children's Health and Air Pollution Study to investigate whether associations between air pollutant exposure in early gestation and neural tube defects were modified by neighbourhood socioeconomic factors in the San Joaquin Valley of California, 1997-2006. There were 5 pollutant exposures, 3 outcomes, and 9 neighbourhood socioeconomic factors included for a total of 135 investigated associations. Estimates were adjusted for maternal race-ethnicity, education, and multivitamin use. We present below odds ratios (ORs) that exclude 1 and a chi-square test of homogeneity P-value of <0.05. We observed increased odds of spina bifida comparing the highest to lowest quartile of particulate matter <10 μm (PM10 ) among those living in a neighbourhood with: (i) median household income of less than $30 000 per year [OR 5.1, 95% confidence interval (CI) 1.7, 15.3]; (ii) more than 20% living below the federal poverty level (OR 2.6, 95% CI 1.1, 6.0); and (iii) more than 30% with less than or equal to a high school education (OR 3.2, 95% CI 1.4, 7.4). The ORs were not statistically significant among those higher socioeconomic status (SES) neighbourhoods. Our results demonstrate effect modification by neighbourhood socioeconomic factors in the association of particulate matter and neural tube defects in California. © 2015 John Wiley & Sons Ltd.

Ion exchange and trace element surface complexation reactions associated with applied recharge of low-TDS water in the San Joaquin Valley, California

International Nuclear Information System (INIS)

McNab, Walt W.; Singleton, Michael J.; Moran, Jean E.; Esser, Bradley K.

2009-01-01

Stable isotope data, a dissolved gas tracer study, groundwater age dating, and geochemical modeling were used to identify and characterize the effects of introducing low-TDS recharge water in a shallow aerobic aquifer affected by a managed aquifer recharge project in California's San Joaquin Valley. The data all consistently point to a substantial degree of mixing of recharge water from surface ponds with ambient groundwater in a number of nearby wells screened at depths above 60 m below ground surface. Groundwater age data indicate that the wells near the recharge ponds sample recently recharged water, as delineated by stable O and C isotope data as well as total dissolved solids, in addition to much older groundwater in various mixing proportions. Where the recharge water signature is present, the specific geochemical interactions between the recharge water and the aquifer material appear to include ion exchange reactions (comparative enrichment of affected groundwater with Na and K at the expense of Ca and Mg) and the desorption of oxyanion-forming trace elements (As, V, and Mo), possibly in response to the elevated pH of the recharge water

Real-Time Water Quality Monitoring and Habitat Assessment in the San Luis National Wildlife Refuge

OpenAIRE

Quinn, Nigel W.T.; Hanlon, Jeremy S.; Burns, Josephine R.; Stromayer, Karl A.K.; Jordan, Brandon M.; Ennis, Mike J.; Woolington, Dennis W.

2005-01-01

The project report describes a two year experiment to control wetland drainage to the San Joaquin River of California from the San Luis National Wildlife Refuge using a decision support system for real-time water quality management. This system required the installation and operation of one inlet and three drainage flow and water quality monitoring stations which allowed a simnple mass balance model to be developed of the seasonally managed wetlands in the study area. Remote sensing meth...

Mapping the Distribution and Biomass of Emergent Aquatic Plants in the Sacramento-San Joaquin River Delta of California Using Landsat Imagery Analysis

Science.gov (United States)

Potter, Christopher

2015-01-01

This study evaluated the cost-effective and timely use of Landsat imagery to map and monitor emergent aquatic plant biomass and to filter satellite image products for the most probable locations of water hyacinth coverage in the Delta based on field observations collected immediately after satellite image acquisition.

Landsat-based monitoring of crop water demand in the San Joaquin Valley

Science.gov (United States)

Johnson, L.; Trout, T.; Wang, D.; Melton, F. S.

2010-12-01

Fresh water resources are becoming increasingly scarce in California due to urbanization, environmental regulation, and groundwater depletion. The strain is projected to worsen under various climate change scenarios and is exacerbated by declining water delivery infrastructure. It is estimated that irrigated agriculture currently commands more than 70% of the state’s water supply, and many growers are striving to improve water use efficiency in order to help maintain the state’s rich agricultural heritage. Remote sensing technology offers the potential to monitor cropland evapotranspiration (ET) regionally, while making farm-based irrigation scheduling more practical, convenient, and possibly more accurate. Landsat5-TM imagery was used in this study to monitor basal crop evapotranspiration (ETcb), which is primarily related to plant transpiration, for several San Joaquin Valley fields throughout the 2008 growing season. A ground-based digital camera was used to measure fractional cover of 48 study fields planted to 18 different crop types (row crops, grains, orchard, and vineyard) of varying maturity over 12 dates coinciding with Landsat overpasses. Landsat L1T terrain-corrected images were atmospherically corrected to surface reflectance by an implementation of the Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS), then converted to normalized difference vegetation index (NDVI) on a per-pixel basis. A strong linear relationship between NDVI and fractional cover was observed (r2=0.96), and a resulting conversion equation was used to transform all imagery to fractional cover. Conversion equations previously developed by use of weighting lysimeters were then used to transform fractional cover to basal crop coefficient (Kcb; ratio of crop transpiration plus a small diffusive soil evaporation component to reference ET). Finally, measurements of grass reference ET (ETo) from the California Irrigation Management Information System were used to

Maps Suggest Transport and Source Processes of PM2.5 at 1 km x 1 km for the Whole San Joaquin Valley, Winter 2011 (Generalizations from DISCOVER-AQ)

Science.gov (United States)

Chatfield, R. B.

2016-12-01

We present interpreted data analysis using MAIAC (Multiangle implementation of Atmospheric Correction) retrievals and appropriate RAPid Update Cycle (RAP) meteorology to map respirable aerosol (PM2.5) for the period January and February, 2011. The San Joaquin Valley is one of the unhealthiest regions in the USA for PM2.5 and related morbidity. The methodology evaluated can be used for the entire moderate-resolution imaging spectrometer (MODIS, VIIRS) data record. Other difficult areas of the West: Riverside, CA, Salt Lake City, UT, and Doña Ana County, NM share similar difficulties and solutions. The maps of boundary layer depth for 11-16 hr local time from RAP allows us to interpret aerosol optical thickness as a concentration of particles in a nearly well-mixed box capped by clean air. That mixing is demonstrated by DISCOVER-AQ data and afternoon samples from the airborne measurements, P3B (on-board) and B200 (HSRL2 lidar). This data and the PM2.5 gathered at the deployment sites allowed us to estimate and then evaluate consistency and daily variation of the AOT to PM2.5 relationship. Mixed-effects modeling allowed a refinement of that relation from day to day; RAP mixed layers explained the success of previous mixed-effects modeling. Compositional, size-distribution, and MODIS angle-of-regard effects seem to describe the need for residual daily correction beyond ML depth. We report on an extension method to the entire San Joaquin Valley for all days with MODIS imagery using the permanent PM2.5 stations, evaluated for representativeness. Resulting map movies show distinct sources, particularly Interstate-5 (at 1km x 1km resolution) and the broader Bakersfield area. Accompanying winds suggest transport effects and variable pathways of pollution cleanout. Such estimates should allow morbidity/mortality studies. They should be also useful for actual model assimilations, where composition and sources are uncertain. We conclude with a description of new work to

The three-dimensional geologic model used for the 2003 National Oil and Gas Assessment of the San Joaquin Basin Province, California: Chapter 7 in Petroleum systems and geologic assessment of oil and gas in the San Joaquin Basin Province, California

Science.gov (United States)

Hosford Scheirer, Allegra

2013-01-01

We present a three-dimensional geologic model of the San Joaquin Basin (SJB) that may be the first compilation of subsurface data spanning the entire basin. The model volume spans 200 × 90 miles, oriented along the basin axis, and extends to ~11 miles depth, for a total of more than 1 million grid nodes. This model supported the 2003 U.S. Geological Survey assessment of future additions to reserves of oil and gas in the SJB. Data sources include well-top picks from more than 3,200 wildcat and production wells, published cross sections, regional seismic grids, and fault maps. The model consists of 15 chronostratigraphic horizons ranging from the Mesozoic crystalline basement to the topographic surface. Many of the model units are hydrocarbon reservoir rocks and three—the Cretaceous Moreno Formation, the Eocene Kreyenhagen Formation, and the Miocene Monterey Formation—are hydrocarbon source rocks. The White Wolf Fault near the southern end of the basin divides the map volume into 2 separate fault blocks. The construction of a three-dimensional model of the entire SJB encountered many challenges, including complex and inconsistent stratigraphic nomenclature, significant facies changes across and along the basin axis, time-transgressive formation tops, uncertain correlation of outcrops with their subsurface equivalents, and contradictory formation top data. Although some areas of the model are better resolved than others, the model facilitated the 2003 resource assessment in several ways, including forming the basis of a petroleum system model and allowing a precise definition of assessment unit volumes.

The Association of Ambient Air Pollution and Traffic Exposures With Selected Congenital Anomalies in the San Joaquin Valley of California

Science.gov (United States)

Padula, Amy M.; Tager, Ira B.; Carmichael, Suzan L.; Hammond, S. Katharine; Lurmann, Frederick; Shaw, Gary M.

2013-01-01

Congenital anomalies are a leading cause of infant mortality and are important contributors to subsequent morbidity. Studies suggest associations between environmental contaminants and some anomalies, although evidence is limited. We aimed to investigate whether ambient air pollutant and traffic exposures in early gestation contribute to the risk of selected congenital anomalies in the San Joaquin Valley of California, 1997–2006. Seven exposures and 5 outcomes were included for a total of 35 investigated associations. We observed increased odds of neural tube defects when comparing the highest with the lowest quartile of exposure for several pollutants after adjusting for maternal race/ethnicity, education, and multivitamin use. The adjusted odds ratio for neural tube defects among those with the highest carbon monoxide exposure was 1.9 (95% confidence interval: 1.1, 3.2) compared with those with the lowest exposure, and there was a monotonic exposure-response across quartiles. The highest quartile of nitrogen oxide exposure was associated with neural tube defects (adjusted odds ratio = 1.8, 95% confidence interval: 1.1, 2.8). The adjusted odds ratio for the highest quartile of nitrogen dioxide exposure was 1.7 (95% confidence interval: 1.1, 2.7). Ozone was associated with decreased odds of neural tube defects. Our results extend the limited body of evidence regarding air pollution exposure and adverse birth outcomes. PMID:23538941

Internal acid buffering in San Joaquin Valley fog drops and its influence on aerosol processing

Science.gov (United States)

Collett, Jeffrey L.; Hoag, Katherine J.; Rao, Xin; Pandis, Spyros N.

Although several chemical pathways exist for S(IV) oxidation in fogs and clouds, many are self-limiting: as sulfuric acid is produced and the drop pH declines, the rates of these pathways also decline. Some of the acid that is produced can be buffered by uptake of gaseous ammonia. Additional internal buffering can result from protonation of weak and strong bases present in solution. Acid titrations of high pH fog samples (median pH=6.49) collected in California's San Joaquin Valley reveal the presence of considerable internal acid buffering. In samples collected at a rural location, the observed internal buffering could be nearly accounted for based on concentrations of ammonia and bicarbonate present in solution. In samples collected in the cities of Fresno and Bakersfield, however, significant additional, unexplained buffering was present over a pH range extending from approximately four to seven. The additional buffering was found to be associated with dissolved compounds in the fogwater. It could not be accounted for by measured concentrations of low molecular weight ( C1- C3) carboxylic acids, S(IV), phosphate, or nitrophenols. The amount of unexplained buffering in individual fog samples was found to correlate strongly with the sum of sample acetate and formate concentrations, suggesting that unmeasured organic species may be important contributors. Simulation of a Bakersfield fog episode with and without the additional, unexplained buffering revealed a significant impact on the fog chemistry. When the additional buffering was included, the simulated fog pH remained 0.3-0.7 pH units higher and the amount of sulfate present after the fog evaporated was increased by 50%. Including the additional buffering in the model simulation did not affect fogwater nitrate concentrations and was found to slightly decrease ammonium concentrations. The magnitude of the buffering effect on aqueous sulfate production is sensitive to the amount of ozone present to oxidize S

Determination of pesticides associated with suspended sediments in the San Joaquin River, California, USA, using gas chromatography-ion trap mass spectrometry

Science.gov (United States)

Bergamaschi, B.A.; Baston, D.S.; Crepeau, K.L.; Kuivila, K.M.

1999-01-01

An analytical method useful for the quantification of a range of pesticides and pesticide degradation products associated with suspended sediments was developed by testing a variety of extraction and cleanup schemes. The final extraction and cleanup methods chosen for use are suitable for the quantification of the listed pesticides using gas chromatography-ion trap mass spectrometry and the removal of interfering coextractable organic material found in suspended sediments. Methylene chloride extraction followed by Florisil cleanup proved most effective for separation of coextractives from the pesticide analytes. Removal of elemental sulfur was accomplished with tetrabutylammonium hydrogen sulfite. The suitability of the method for the analysis of a variety of pesticides was evaluated, and the method detection limits (MDLs) were determined (0.1-6.0 ng/g dry weight of sediment) for 21 compounds. Recovery of pesticides dried onto natural sediments averaged 63%. Analysis of duplicate San Joaquin River suspended-sediment samples demonstrated the utility of the method for environmental samples with variability between replicate analyses lower than between environmental samples. Eight of 21 pesticides measured were observed at concentrations ranging from the MDL to more than 80 ng/g dry weight of sediment and exhibited significant temporal variability. Sediment-associated pesticides, therefore, may contribute to the transport of pesticides through aquatic systems and should be studied separately from dissolved pesticides.

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

Science.gov (United States)

Martyr-Koller, R.C.; Kernkamp, H.W.J.; Van Dam, Anne A.; Mick van der Wegen,; Lucas, Lisa; Knowles, N.; Jaffe, B.; Fregoso, T.A.

2017-01-01

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period.Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

Application of an unstructured 3D finite volume numerical model to flows and salinity dynamics in the San Francisco Bay-Delta

Science.gov (United States)

Martyr-Koller, R. C.; Kernkamp, H. W. J.; van Dam, A.; van der Wegen, M.; Lucas, L. V.; Knowles, N.; Jaffe, B.; Fregoso, T. A.

2017-06-01

A linked modeling approach has been undertaken to understand the impacts of climate and infrastructure on aquatic ecology and water quality in the San Francisco Bay-Delta region. The Delft3D Flexible Mesh modeling suite is used in this effort for its 3D hydrodynamics, salinity, temperature and sediment dynamics, phytoplankton and water-quality coupling infrastructure, and linkage to a habitat suitability model. The hydrodynamic model component of the suite is D-Flow FM, a new 3D unstructured finite-volume model based on the Delft3D model. In this paper, D-Flow FM is applied to the San Francisco Bay-Delta to investigate tidal, seasonal and annual dynamics of water levels, river flows and salinity under historical environmental and infrastructural conditions. The model is driven by historical winds, tides, ocean salinity, and river flows, and includes federal, state, and local freshwater withdrawals, and regional gate and barrier operations. The model is calibrated over a 9-month period, and subsequently validated for water levels, flows, and 3D salinity dynamics over a 2 year period. Model performance was quantified using several model assessment metrics and visualized through target diagrams. These metrics indicate that the model accurately estimated water levels, flows, and salinity over wide-ranging tidal and fluvial conditions, and the model can be used to investigate detailed circulation and salinity patterns throughout the Bay-Delta. The hydrodynamics produced through this effort will be used to drive affiliated sediment, phytoplankton, and contaminant hindcast efforts and habitat suitability assessments for fish and bivalves. The modeling framework applied here will serve as a baseline to ultimately shed light on potential ecosystem change over the current century.

Modeling a Sustainable Salt Tolerant Grass-Livestock Production System under Saline Conditions in the Western San Joaquin Valley of California

Directory of Open Access Journals (Sweden)

Stephen R. Kaffka

2013-09-01

Full Text Available Salinity and trace mineral accumulation threaten the sustainability of crop production in many semi-arid parts of the world, including California’s western San Joaquin Valley (WSJV. We used data from a multi-year field-scale trial in Kings County and related container trials to simulate a forage-grazing system under saline conditions. The model uses rainfall and irrigation water amounts, irrigation water quality, soil, plant, and atmospheric variables to predict Bermuda grass (Cynodon dactylon (L. Pers. growth, quality, and use by cattle. Simulations based on field measurements and a related container study indicate that although soil chemical composition is affected by irrigation water quality, irrigation timing and frequency can be used to mitigate salt and trace mineral accumulation. Bermuda grass yields of up to 12 Mg dry matter (DM·ha−1 were observed at the field site and predicted by the model. Forage yield and quality supports un-supplemented cattle stocking rates of 1.0 to 1.2 animal units (AU·ha−1. However, a balance must be achieved between stocking rate, desired average daily gain, accumulation of salts in the soil profile, and potential pollution of ground water from drainage and leaching. Using available weather data, crop-specific parameter values and field scale measurements of soil salinity and nitrogen levels, the model can be used by farmers growing forages on saline soils elsewhere, to sustain forage and livestock production under similarly marginal conditions.

Future impacts of distributed power generation on ambient ozone and particulate matter concentrations in the San Joaquin Valley of California.

Science.gov (United States)

Vutukuru, Satish; Carreras-Sospedra, Marc; Brouwer, Jacob; Dabdub, Donald

2011-12-01

Distributed power generation-electricity generation that is produced by many small stationary power generators distributed throughout an urban air basin-has the potential to supply a significant portion of electricity in future years. As a result, distributed generation may lead to increased pollutant emissions within an urban air basin, which could adversely affect air quality. However, the use of combined heating and power with distributed generation may reduce the energy consumption for space heating and air conditioning, resulting in a net decrease of pollutant and greenhouse gas emissions. This work used a systematic approach based on land-use geographical information system data to determine the spatial and temporal distribution of distributed generation emissions in the San Joaquin Valley Air Basin of California and simulated the potential air quality impacts using state-of-the-art three-dimensional computer models. The evaluation of the potential market penetration of distributed generation focuses on the year 2023. In general, the air quality impacts of distributed generation were found to be small due to the restrictive 2007 California Air Resources Board air emission standards applied to all distributed generation units and due to the use of combined heating and power. Results suggest that if distributed generation units were allowed to emit at the current Best Available Control Technology standards (which are less restrictive than the 2007 California Air Resources Board standards), air quality impacts of distributed generation could compromise compliance with the federal 8-hr average ozone standard in the region.

Variability of indicator values for ozone production sensitivity: a model study in Switzerland and San Joaquin Valley (California)

International Nuclear Information System (INIS)

Andreani-Aksoyoglu, S.; Keller, J.; Prevot, A.S.H.; Chenghsuan Lu; Chang, J.S.

2001-01-01

The threshold values of indicator species and ratios delineating the transition between NO x and VOC sensitivity of ozone formation are assumed to be universal by various investigators. However, our previous studies suggested that threshold values might vary according to the locations and conditions. In this study, threshold values derived from various model simulations at two different locations (the area of Switzerland by UAM Model and San Joaquin Valley of Central California by SAQM Model) are examined using a new approach for defining NO x and VOC sensitive regimes. Possible definitions for the distinction of NO x and VOC sensitive ozone production regimes are given. The dependence of the threshold values for indicators and indicator ratios such as NO y , O 3 /NO z , HCHO/NO y , and H 2 O 2 /HNO 3 on the definition of NO x and VOC sensitivity is discussed. Then the variations of threshold values under low emission conditions and in two different days are examined in both areas to check whether the models respond consistently to changes in environmental conditions. In both cases, threshold values are shifted similarly when emissions are reduced. Changes in the wind fields and aging of the photochemical oxidants seem to cause the day-to-day variation of the threshold values. O 3 /NO z and HCHO/NO y indicators are predicted to be unsatisfactory to separate the NO x and VOC sensitive regimes. Although NO y and H 2 O 2 /HNO 3 provide a good separation of the two regimes, threshold values are affected by changes in the environmental conditions studied in this work. (author)

A comprehensive analysis of high-magnitude streamflow and trends in the Central Valley, California

Science.gov (United States)

Kocis, T. N.; Dahlke, H. E.

2017-12-01

California's climate is characterized by the largest precipitation and streamflow variability observed within the conterminous US. This, combined with chronic groundwater overdraft of 0.6-3.5 km3 yr-1, creates the need to identify additional surface water sources available for groundwater recharge using methods such as agricultural groundwater banking, aquifer storage and recovery, and spreading basins. High-magnitude streamflow, i.e. flow above the 90th percentile, that exceeds environmental flow requirements and current surface water allocations under California water rights, could be a viable source of surface water for groundwater banking. Here, we present a comprehensive analysis of the magnitude, frequency, duration and timing of high-magnitude streamflow (HMF "metrics") over multiple time periods for 93 stream gauges covering the Sacramento, San Joaquin and Tulare basins in California. In addition, we present trend analyses conducted on the same dataset and all HMF metrics using generalized additive models, the Mann-Kendall trend test, and the Signal to Noise Ratio test. The results of the comprehensive analysis show, in short, that in an average year with HMF approximately 3.2 km3 of high-magnitude flow is exported from the entire Central Valley to the Sacramento-San Joaquin Delta, often at times when environmental flow requirements of the Delta and major rivers are exceeded. High-magnitude flow occurs, on average, during 7 and 4.7 out of 10 years in the Sacramento River and the San Joaquin-Tulare Basins, respectively, from just a few storm events (5-7 1-day peak events) lasting for a total of 25-30 days between November and April. Preliminary trend tests suggest that all HMF metrics show limited change over the last 50 years. As a whole, the results suggest that there is sufficient unmanaged surface water physically available to mitigate long-term groundwater overdraft in the Central Valley.

Using Science Skills to Understand Ecophysiology and Manage Resources

Science.gov (United States)

Bubenheim, David

2015-01-01

Presentation will be for a general audience and focus on plant science and ecosystem science in NASA. Examples from the projects involving the presenter will be used to illustrate. Specifically, the California Sacramento-San Joaquin River Delta project. This collaboration supports the goals of the Delta Plan in developing science-based, adaptive-management strategies. The mission is to improve reliability of water supply and restore a healthy Delta ecosystem while enhancing agriculture and recreation. NASA can contribute gap-filling science understanding of overall functions in the Delta ecosystem and assess and help develop management plans for specific issues. Airborne and satellite remote-sensing, ecosystem modeling, and biological studies provide underlying data needed by Delta stakeholders to assess and address water, ecosystem restoration, and environmental and economic impacts of potential actions in the Delta. The California Sacramento-San Joaquin River Delta, the hub for California's water supply, supports important ecosystem services for fisheries, supplies drinking water for millions, and distributes water from Northern California to agriculture and urban communities to the south; millions of people and businesses depend on Delta water. Decades of competing demands for Delta resources and year-to-year variability in precipitation has resulted in diminished overall health of the Delta. Declines in fish populations, threatened ecosystems, endangered species, invasive plants and animals, cuts in agricultural exports, and increased water conservation is the result. NASA and the USDA, building on previous collaborations, aide local Delta stakeholders in assessing and developing an invasive weed management approach. Aquatic, terrestrial, and riparian invasive weeds threaten aquatic and terrestrial ecosystem restoration efforts. Aquatic weeds are currently detrimental economically, environmentally, and sociologically in the Delta. They negatively impact the

Anthropogenic influences on shoreline and nearshore evolution in the San Francisco Bay coastal system

Science.gov (United States)

Dallas, K.L.; Barnard, P.L.

2011-01-01

Analysis of four historical bathymetric surveys over a 132-year period has revealed significant changes to the morphology of the San Francisco Bar, an ebb-tidal delta at the mouth of San Francisco Bay estuary. From 1873 to 2005 the San Francisco Bar vertically-eroded an average of 80 cm over a 125 km2 area, which equates to a total volume loss of 100 ± 52 million m3 of fine- to coarse-grained sand. Comparison of the surveys indicates the entire ebb-tidal delta contracted radially, with the crest moving landward an average of 1 km. Long-term erosion of the ebb-tidal delta is hypothesized to be due to a reduction in the tidal prism of San Francisco Bay and a decrease in coastal sediment supply, both as a result of anthropogenic activities. Prior research indicates that the tidal prism of the estuary was reduced by 9% from filling, diking, and sedimentation. Compilation of historical records dating back to 1900 reveals that a minimum of 200 million m3 of sediment has been permanently removed from the San Francisco Bay coastal system through dredging, aggregate mining, and borrow pit mining. Of this total, ~54 million m3 of sand-sized or coarser sediment was removed from central San Francisco Bay. With grain sizes comparable to the ebb-tidal delta, and its direct connection to the bay mouth, removal of sediments from central San Francisco Bay may limit the sand supply to the delta and open coast beaches. SWAN wave modeling illustrates that changes to the morphology of the San Francisco Bar have altered the alongshore wave energy distribution at adjacent Ocean Beach, and thus may be a significant factor in a persistent beach erosion ‘hot spot’ occurring in the area. Shoreline change analyses show that the sandy shoreline in the shadow of the ebb-tidal delta experienced long-term (1850s/1890s to 2002) and short-term (1960s/1980s to 2002) accretion while the adjacent sandy shoreline exposed to open-ocean waves experienced long-term and short-term erosion. Therefore

Identifying and classifying water hyacinth (Eichhornia crassipes) using the HyMap sensor

Science.gov (United States)

Rajapakse, Sepalika S.; Khanna, Shruti; Andrew, Margaret E.; Ustin, Susan L.; Lay, Mui

2006-08-01

In recent years, the impact of aquatic invasive species on biodiversity has become a major global concern. In the Sacramento-San Joaquin Delta region in the Central Valley of California, USA, dense infestations of the invasive aquatic emergent weed, water hyacinth (Eichhornia crassipes) interfere with ecosystem functioning. This silent invader constantly encroaches into waterways, eventually making them unusable by people and uninhabitable to aquatic fauna. Quantifying and mapping invasive plant species in aquatic ecosystems is important for efficient management and implementation of mitigation measures. This paper evaluates the ability of hyperspectral imagery, acquired using the HyMap sensor, for mapping water hyacinth in the Sacramento-San Joaquin Delta region. Classification was performed on sixty-four flightlines acquired over the study site using a decision tree which incorporated Spectral Angle Mapper (SAM) algorithm, absorption feature parameters in the spectral region between 0.4 and 2.5μm, and spectral endmembers. The total image dataset was 130GB. Spectral signatures of other emergent aquatic species like pennywort (Hydrocotyle ranunculoides) and water primrose (Ludwigia peploides) showed close similarity with the water hyacinth spectrum, however, the decision tree successfully discriminated water hyacinth from other emergent aquatic vegetation species. The classification algorithm showed high accuracy (κ value = 0.8) in discriminating water hyacinth.

Updates on Water Use of Pistachio Orchards Grown in the San Joaquin Valley of California on Saline Soils

Science.gov (United States)

Zaccaria, Daniele; Marino, Giulia; Whiting, Michael; Sanden, Blake; Ferguson, Louise; Lampinen, Bruce; Kent, Eric; Snyder, Richard; Grattan, Stephen; Little, Cayle

2017-04-01

Pistachio acreage is rapidly expanding in California thanks to its economic profitability and capacity to grow and produce in salt-affected soils. Our team at University of California is updating information on actual water use (ET) of mature pistachio orchards grown on saline soils under micro-irrigation methods. Actual Evapotranspiration (ETa) and Crop Coefficients (Ka) were determined for the 2015 and 2016 crop seasons on four pistachio orchards grown in the San Joaquin Valley (SJV) on grounds with increasing levels of soil-water salinity, using the residual of energy balance method with a combination of eddy covariance and surface renewal equipment. Tree canopy cover, light interception, and plant water status across the orchards were also measured and evaluated. Our preliminary results show that salinity strongly affects the tree water use, resulting in 10-30% less ET for medium to high salt-affected soils. Salinity also showed a strong effect on tree water status and light interception, as suggested by values of the Midday Stem Water Potential (ΨSWP) around 10 to 15-bar lower in salt-affected than in the control orchard, and by the intercepted Photosynthetic Active Radiation (PAR) decreasing from 75% in the control orchard to 25% in the severely salt affected grounds. The crop coefficient values we observed in this study are lower than those commonly used for irrigation scheduling in the SJV, suggesting that pistachio growers could better tailor irrigation management to the actual site-specific orchard conditions (e.g. canopy features and soil-water salinity) if they are provided updated information. Improved irrigation practices could likely lead to significant water savings and thus improve the resource-efficiency and competitiveness of pistachio production in the SJV. Keywords: Pistacia vera L., salinity, stem water potential, surface renewal, canopy cover.

Diet, Prey Selection, and Body Condition of Age-0 Delta Smelt, Hypomesus transpacificus, in the Upper San Francisco Estuary

Directory of Open Access Journals (Sweden)

Steven B. Slater

2014-09-01

Full Text Available Steven B. Slater and Randall D. Baxterdoi: http://dx.doi.org/10.15447/sfews.2014v12iss3art1The Delta Smelt, an endangered fish, has suffered a long-term decline in abundance, believed to result from, in part, to changes in the pelagic food web of the upper San Francisco Estuary. To investigate the current role of food as a factor in Delta Smelt well-being, we developed reference criteria for gut fullness and body condition based on allometric growth. We then examined monthly diet, prey selectivity, and gut fullness of larvae and juvenile Delta Smelt collected April through September in 2005 and 2006 for evidence of feeding difficulties leading to reduced body condition. Calanoid copepods Eurytemora affinis and Pseudodiaptomus forbesi remained major food items during spring and from early summer through fall, respectively. Other much larger copepods and macroinvertebrates contributed in lesser numbers to the diet of older juvenile fish from mid-summer through fall. In fall, juvenile Delta Smelt periodically relied heavily on very small prey and prey potentially associated with demersal habitat, suggesting typical pelagic food items were in short supply. We found a strong positive selection for E. affinis and P. forbesi, neutral to negative selection for evasive calanoid Sinocalanus doerrii, and neutral to negative selection for the small cyclopoid copepod Limnoithona tetraspina and copepod nauplii, which were consumed only when extremely numerous in the environment. Feeding incidence was significantly higher in 2006, but among successfully feeding fish we found no between year difference in gut fullness. However, we did detect differences in fullness across months in both years. We found no difference in body condition of Delta Smelt between years yet our sample sizes were low in September when Delta Smelt reverted to feeding on very small organisms and fullness declined, so the longer-term effect remains unknown. Our findings suggest that: Delta

Critical Assessment of the Delta Smelt Population in the San Francisco Estuary, California

Directory of Open Access Journals (Sweden)

William A Bennett

2005-09-01

Full Text Available The delta smelt (Hypomesus transpacificus is a small and relatively obscure fish that has recently risen to become a major focus of environmental concern in California. It was formally abundant in the low-salinity and freshwater habitats of the northeastern San Francisco Estuary, but is now listed as threatened under the Federal and California State Endangered Species Acts. In the decade following the listings scientific understanding has increased substantially, yet several key aspects of its biology and ecological relationships within the highly urbanized estuary remain uncertain. A key area of controversy centers on impacts to delta smelt associated with exporting large volumes of freshwater from the estuary to supply California’s significant agricultural and urban water demands. The lack of appropriate data, however, impedes efforts to resolve these issues and develop sound management and restoration alternatives. Delta smelt has an unusual life history strategy relative to many fishes. Some aspects of its biology are similar to other coastal fishes, particularly salmonids. Smelts in the genus, Hypomesus, occur throughout the Pacific Rim, have variable life history strategies, and are able to adapt rapidly to local environments. By comparison, delta smelt has a tiny geographic range being confined to a thin margin of low salinity habitat in the estuary. It primarily lives only a year, has relatively low fecundity, and pelagic larvae; life history attributes that are unusual when compared with many fishes worldwide. A small proportion of delta smelt lives two years. These individuals are relatively highly fecund but are so few in number that their reproductive contribution only may be of benefit to the population after years of extremely poor spawning success and survival. Provisioning of reproductive effort by these older fish may reflect a bet-hedging tactic to insure population persistence. Overall, the population persists by maximizing

Suspended sediment transport trough a large fluvial-tidal channel network

Science.gov (United States)

Wright, Scott A.; Morgan-King, Tara L.

2015-01-01

The confluence of the Sacramento and San Joaquin Rivers, CA, forms a large network of interconnected channels, referred to as the Sacramento-San Joaquin Delta (the Delta). The Delta comprises the transition zone from the fluvial influences of the upstream rivers and tidal influences of San Francisco Bay downstream. Formerly an extensive tidal marsh, the hydrodynamics and geomorphology of Delta have been substantially modified by humans to support agriculture, navigation, and water supply. These modifications, including construction of new channels, diking and draining of tidal wetlands, dredging of navigation channels, and the operation of large pumping facilities for distribution of freshwater from the Delta to other parts of the state, have had a dramatic impact on the physical and ecological processes within the Delta. To better understand the current physical processes, and their linkages to ecological processes, the USGS maintains an extensive network of flow, sediment, and water quality gages in the Delta. Flow gaging is accomplished through use of the index-velocity method, and sediment monitoring uses turbidity as a surrogate for suspended-sediment concentration. Herein, we present analyses of the transport and dispersal of suspended sediment through the complex network of channels in the Delta. The primary source of sediment to the Delta is the Sacramento River, which delivers pulses of sediment primarily during winter and spring runoff events. Upon reaching the Delta, the sediment pulses move through the fluvial-tidal transition while also encountering numerous channel junctions as the Sacramento River branches into several distributary channels. The monitoring network allows us to track these pulses through the network and document the dominant transport pathways for suspended sediment. Further, the flow gaging allows for an assessment of the relative effects of advection (the fluvial signal) and dispersion (from the tides) on the sediment pulses as they

Residential Agricultural Pesticide Exposures and Risk of Neural Tube Defects and Orofacial Clefts Among Offspring in the San Joaquin Valley of California

Science.gov (United States)

Yang, Wei; Carmichael, Suzan L.; Roberts, Eric M.; Kegley, Susan E.; Padula, Amy M.; English, Paul B.; Shaw, Gary M.

2014-01-01

We examined whether early gestational exposures to pesticides were associated with an increased risk of anencephaly, spina bifida, cleft lip with or without cleft palate (CLP), or cleft palate only. We used population-based data along with detailed information from maternal interviews. Exposure estimates were based on residential proximity to agricultural pesticide applications during early pregnancy. The study population derived from the San Joaquin Valley, California (1997–2006). Analyses included 73 cases with anencephaly, 123 with spina bifida, 277 with CLP, and 117 with cleft palate only in addition to 785 controls. A total of 38% of the subjects were exposed to 52 chemical groups and 257 specific chemicals. There were relatively few elevated odds ratios with 95% confidence intervals that excluded 1 after adjustment for relevant covariates. Those chemical groups included petroleum derivatives for anencephaly, hydroxybenzonitrile herbicides for spina bifida, and 2,6-dinitroaniline herbicides and dithiocarbamates-methyl isothiocyanate for CLP. The specific chemicals included 2,4-D dimethylamine salt, methomyl, imidacloprid, and α-(para-nonylphenyl)-ω-hydroxypoly(oxyethylene) phosphate ester for anencephaly; the herbicide bromoxynil octanoate for spina bifida; and trifluralin and maneb for CLP. Adjusted odds ratios ranged from 1.6 to 5.1. Given that such odds ratios might have arisen by chance because of the number of comparisons, our study showed a general lack of association between a range of agricultural pesticide exposures and risks of selected birth defects. PMID:24553680

Sensitivity and Uncertainty Analysis for Streamflow Prediction Using Different Objective Functions and Optimization Algorithms: San Joaquin California

Science.gov (United States)

Paul, M.; Negahban-Azar, M.

2017-12-01

The hydrologic models usually need to be calibrated against observed streamflow at the outlet of a particular drainage area through a careful model calibration. However, a large number of parameters are required to fit in the model due to their unavailability of the field measurement. Therefore, it is difficult to calibrate the model for a large number of potential uncertain model parameters. This even becomes more challenging if the model is for a large watershed with multiple land uses and various geophysical characteristics. Sensitivity analysis (SA) can be used as a tool to identify most sensitive model parameters which affect the calibrated model performance. There are many different calibration and uncertainty analysis algorithms which can be performed with different objective functions. By incorporating sensitive parameters in streamflow simulation, effects of the suitable algorithm in improving model performance can be demonstrated by the Soil and Water Assessment Tool (SWAT) modeling. In this study, the SWAT was applied in the San Joaquin Watershed in California covering 19704 km2 to calibrate the daily streamflow. Recently, sever water stress escalating due to intensified climate variability, prolonged drought and depleting groundwater for agricultural irrigation in this watershed. Therefore it is important to perform a proper uncertainty analysis given the uncertainties inherent in hydrologic modeling to predict the spatial and temporal variation of the hydrologic process to evaluate the impacts of different hydrologic variables. The purpose of this study was to evaluate the sensitivity and uncertainty of the calibrated parameters for predicting streamflow. To evaluate the sensitivity of the calibrated parameters three different optimization algorithms (Sequential Uncertainty Fitting- SUFI-2, Generalized Likelihood Uncertainty Estimation- GLUE and Parameter Solution- ParaSol) were used with four different objective functions (coefficient of determination

Evaluation of the potential for artificial ground-water recharge in eastern San Joaquin County, California; Phase 3

Science.gov (United States)

Hamlin, S.N.

1987-01-01

Infiltration tests were used to evaluate the potential of basin spreading surface water as a means of artificially recharging the aquifer system in eastern San Joaquin County, California. Two infiltration sites near Lockeford and Linden were selected on the basis of information collected during the first two phases of the study. Data from the infiltration tests indicate that the two sites are acceptable for recharge by the basin-spreading method. Infiltration rates ranged between 6.7 and 10.5 ft/day near Lockeford and between 2.6 and 11.2 ft/day near Linden. Interpretation of these data is limited by lack of information on the response of the saturated zone during testing and by the inherent difficulty in extrapolating the results of small-scale tests to larger long-term operations. Lithology is a major factor that controls infiltration rates at the test sites. The unsaturated zone is characterized by heterogeneous layers of coarse- and fine- grained materials. Clay layers of low hydraulic conductivity commonly form discontinuous lenses that may cause a transient perched water table to develop during recharge. Water level measurements from wells screened in the unsaturated zone indicate that the perched water table could reach the land surface after 2 and 5 months of recharge near Lockeford and Linden, respectively. These figures probably represent the minimum time necessary for saturation of the land. Another major factor that affects infiltration rates is the quality of the recharge water, particularly the suspended sediment content. The clogging action of suspended sediment may be minimized by: (1) pretreatment of recharge water in a settling pond, (2) adherence to a routine program of monitoring and maintenance, and (3) proper design of the recharge facility. Other factors that affect infiltration rates include basin excavation technique, basin shape, and maintenance procedures. Efficient operation of the recharge facility requires careful attention to the

The Maiestas of the 1162 Bible of San Isidoro de León in the Museo Arqueológico Nacional (Madrid

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Ana Hernández

2017-06-01

Full Text Available Joaquin Yarza has attributed a loose folio containing a full-page representation of the Maiestas in the MAN to the 1162 Bible of San Isidoro de León. A comparative analysis of both works and documentary evidence confirm this identification, thereby deepening our understanding of the works.

Ammonia and Methane Dairy Emission Plumes in the San Joaquin Valley of California from Individual Feedlot to Regional Scales

Science.gov (United States)

Miller, David J.; Sun, Kang; Pan, Da; Zondlo, Mark A.; Nowak, John B.; Liu, Zhen; Diskin, Glenn; Sachse, Glen; Beyersdorf, Andreas; Ferrare, Richard;

A Tidally Averaged Sediment-Transport Model for San Francisco Bay, California

Science.gov (United States)

Lionberger, Megan A.; Schoellhamer, David H.

2009-01-01

A tidally averaged sediment-transport model of San Francisco Bay was incorporated into a tidally averaged salinity box model previously developed and calibrated using salinity, a conservative tracer (Uncles and Peterson, 1995; Knowles, 1996). The Bay is represented in the model by 50 segments composed of two layers: one representing the channel (>5-meter depth) and the other the shallows (0- to 5-meter depth). Calculations are made using a daily time step and simulations can be made on the decadal time scale. The sediment-transport model includes an erosion-deposition algorithm, a bed-sediment algorithm, and sediment boundary conditions. Erosion and deposition of bed sediments are calculated explicitly, and suspended sediment is transported by implicitly solving the advection-dispersion equation. The bed-sediment model simulates the increase in bed strength with depth, owing to consolidation of fine sediments that make up San Francisco Bay mud. The model is calibrated to either net sedimentation calculated from bathymetric-change data or measured suspended-sediment concentration. Specified boundary conditions are the tributary fluxes of suspended sediment and suspended-sediment concentration in the Pacific Ocean. Results of model calibration and validation show that the model simulates the trends in suspended-sediment concentration associated with tidal fluctuations, residual velocity, and wind stress well, although the spring neap tidal suspended-sediment concentration variability was consistently underestimated. Model validation also showed poor simulation of seasonal sediment pulses from the Sacramento-San Joaquin River Delta at Point San Pablo because the pulses enter the Bay over only a few days and the fate of the pulses is determined by intra-tidal deposition and resuspension that are not included in this tidally averaged model. The model was calibrated to net-basin sedimentation to calculate budgets of sediment and sediment-associated contaminants. While

Microbial diversity in restored wetlands of San Francisco Bay

Energy Technology Data Exchange (ETDEWEB)

Theroux, Susanna [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; Hartman, Wyatt [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; He, Shaomei [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.; Univ. of Wisconsin, Madison, WI (United States); Tringe, Susannah [Lawrence Berkeley National Lab. (LBNL), Walnut Creek, CA (United States). Dept. of Energy Joint Genome Inst.

2013-12-09

Wetland ecosystems may serve as either a source or a sink for atmospheric carbon and greenhouse gases. This delicate carbon balance is influenced by the activity of belowground microbial communities that return carbon dioxide and methane to the atmosphere. Wetland restoration efforts in the San Francisco Bay-Delta region may help to reverse land subsidence and possibly increase carbon storage in soils. However, the effects of wetland restoration on microbial communities, which mediate soil metabolic activity and carbon cycling, are poorly studied. In an effort to better understand the underlying factors which shape the balance of carbon flux in wetland soils, we targeted the microbial communities in a suite of restored and historic wetlands in the San Francisco Bay-Delta region. Using DNA and RNA sequencing, coupled with greenhouse gas monitoring, we profiled the diversity and metabolic potential of the wetland soil microbial communities along biogeochemical and wetland age gradients. Our results show relationships among geochemical gradients, availability of electron acceptors, and microbial community composition. Our study provides the first genomic glimpse into microbial populations in natural and restored wetlands of the San Francisco Bay-Delta region and provides a valuable benchmark for future studies.

Simplified conversions between specific conductance and salinity units for use with data from monitoring stations

Science.gov (United States)

Schemel, Laurence E.

2001-01-01

The U.S. Geological Survey, Bureau of Reclamation, and the California Department of Water Resources maintain a large number of monitoring stations that record specific conductance, often referred to as “electrical conductivity,” in San Francisco Bay Estuary and the Sacramento-San Joaquin Delta. Specific conductance units that have been normalized to a standard temperature are useful in fresh waters, but conversion to salinity units has some considerable advantages in brackish waters of the estuary and Delta. For example, salinity is linearly related to the mixing ratio of freshwater and seawater, which is not the case for specific conductance, even when values are normalized to a standard temperature. The Practical Salinity Scale 1978 is based on specific conductance, temperature, and pressure measurements of seawater and freshwater mixtures (Lewis 1980 and references therein). Equations and data that define the scale make possible conversions between specific conductance and salinity values.

The effects of the pyrethroid insecticide, bifenthrin, on steroid hormone levels and gonadal development of steelhead (Oncorhynchus mykiss) under hypersaline conditions.

Science.gov (United States)

Forsgren, Kristy L; Riar, Navneet; Schlenk, Daniel

2013-06-01

The San Francisco Bay Estuary and Sacramento-San Joaquin Delta (Bay-Delta) is an important breeding and nursery ground for fish. Of particular interest are salmonids that migrate through fresh and saltwater areas polluted with various contaminants including bifenthrin, a widely used pyrethroid insecticide. Male steelhead (Oncorhynchus mykiss) exposed to bifenthrin (0.1 and 1.5μg/L) for two weeks had a lower gonadosomatic index (GSI) in freshwater but were not affected by concurrent bifenthrin exposure and saltwater acclimation. Plasma estradiol-17β (E2) levels and ovarian follicle diameter of fish exposed to bifenthrin (0.1 and 1.5μg/L) in freshwater significantly increased. Under hypersaline conditions, fish exposed to bifenthrin had significantly reduced E2 levels and smaller follicles, and unhealthy ovarian follicles were observed. Given the occurrence of bifenthrin in surface waters of the Bay Delta, understanding the impact of bifenthrin on wildlife is necessary for improving risk assessments of pyrethroids in this important ecosystem. Copyright © 2013 Elsevier Inc. All rights reserved.

Linking human impacts within an estuary to ebb-tidal delta evolution

Science.gov (United States)

Dallas, Kate L.; Barnard, Patrick L.

2009-01-01

San Francisco Bay, California, USA is among the most anthropogenically altered estuaries in the entire United States, but the impact on sediment transport to the coastal ocean has not been quantified. Analysis of four historic bathymetric surveys has revealed large changes to the morphology of the San Francisco Bar, an ebb-tidal delta at the mouth of the San Francisco Bay. From 1873 to 2005 the bar eroded an average of 80 cm, which equates to a total volume loss of 100 + 65 x 106 m3 of sediment. Comparison of the surveys indicates the entire ebb delta has contracted radially while its crest has moved landward an average of 1 km. Compilation of historic records reveals that 130 x 106 m3 of sediment has been permanently removed from the San Francisco Bay and adjacent coastal ocean. Constriction of the bar is hypothesized to be from a decrease in sediment supply from San Francisco Bay, a reduction in the tidal prism of the estuary, and/or a reduction in the input of hydraulic mining debris. Changes to the morphology of the San Francisco Bar have likely altered wave refraction and focusing patterns on adjacent beaches and may be a factor in persistent beach erosion occurring in the area.

40 CFR 81.305 - California.

Science.gov (United States)

2010-07-01

... Coast Air Basin X San Joaquin Valley Air Basin X Sacramento Valley Air Basin (SVAB): Sacramento County X... Sonoma County (S.F. Bay Area Air Basin portion) X Alameda County X Contra Costa County X San Francisco... San Bernardino County San Joaquin Valley Air Basin: Fresno County X Kern County X Kings County X...

Status and understanding of groundwater quality in the two southern San Joaquin Valley study units, 2005-2006 - California GAMA Priority Basin Project

Science.gov (United States)

Burton, Carmen A.; Shelton, Jennifer L.; Belitz, Kenneth

2012-01-01

Groundwater quality in the southern San Joaquin Valley was investigated from October 2005 through March 2006 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Project is conducted by the U.S. Geological Survey (USGS) in collaboration with the California State Water Resources Control Board and the Lawrence Livermore National Laboratory. There are two study units located in the southern San Joaquin Valley: the Southeast San Joaquin Valley (SESJ) study unit and the Kern County Subbasin (KERN) study unit. The GAMA Priority Basin Project in the SESJ and KERN study units was designed to provide a statistically unbiased, spatially distributed assessment of untreated groundwater quality within the primary aquifers. The status assessment is based on water-quality and ancillary data collected in 2005 and 2006 by the USGS from 130 wells on a spatially distributed grid, and water-quality data from the California Department of Public Health (CDPH) database. Data was collected from an additional 19 wells for the understanding assessment. The aquifer systems (hereinafter referred to as primary aquifers) were defined as that part of the aquifer corresponding to the perforation interval of wells listed in the CDPH database for the SESJ and KERN study units. The status assessment of groundwater quality used data from samples analyzed for anthropogenic constituents such as volatile organic compounds (VOCs) and pesticides, as well as naturally occurring inorganic constituents such as major ions and trace elements. The status assessment is intended to characterize the quality of untreated groundwater resources within the primary aquifers in the SESJ and KERN study units, not the quality of drinking water delivered to consumers. Although the status assessment applies to untreated groundwater, Federal and California regulatory and non-regulatory water-quality benchmarks that apply to drinking water are used

Controlled Environments Enable Adaptive Management in Aquatic Ecosystems Under Altered Environments

Science.gov (United States)

Bubenheim, David L.

2016-01-01

Ecosystems worldwide are impacted by altered environment conditions resulting from climate, drought, and land use changes. Gaps in the science knowledge base regarding plant community response to these novel and rapid changes limit both science understanding and management of ecosystems. We describe how CE Technologies have enabled the rapid supply of gap-filling science, development of ecosystem simulation models, and remote sensing assessment tools to provide science-informed, adaptive management methods in the impacted aquatic ecosystem of the California Sacramento-San Joaquin River Delta. The Delta is the hub for California's water, supplying Southern California agriculture and urban communities as well as the San Francisco Bay area. The changes in environmental conditions including temperature, light, and water quality and associated expansion of invasive aquatic plants negatively impact water distribution and ecology of the San Francisco Bay/Delta complex. CE technologies define changes in resource use efficiencies, photosynthetic productivity, evapotranspiration, phenology, reproductive strategies, and spectral reflectance modifications in native and invasive species in response to altered conditions. We will discuss how the CE technologies play an enabling role in filling knowledge gaps regarding plant response to altered environments, parameterization and validation of ecosystem models, development of satellite-based, remote sensing tools, and operational management strategies.

Trabajadores agrícolas en el valle de San Joaquín

Directory of Open Access Journals (Sweden)

Florencio Posadas Segura

2012-06-01

Full Text Available Agricultural workers are the backbone of the rural economy in California and the United States. More than 95 percent are Mexicans, especially in Michoa- can. An extensive fieldwork in the San Joaquin Valley, economic and demo- graphic indicators reveal that confirm the formation of various segments of employees: men and women, children, youth, adults and seniors, indigenous and non-indigenous residents and migrants, documented and undocumen- ted. This vast contingent reinforces the paradoxical trend toward increased production of agricultural wealth and the increasing poverty of authentic food producers.

California's Central Valley Groundwater Study: A Powerful New Tool to Assess Water Resources in California's Central Valley

Science.gov (United States)

Faunt, Claudia C.; Hanson, Randall T.; Belitz, Kenneth; Rogers, Laurel

2009-01-01

Competition for water resources is growing throughout California, particularly in the Central Valley. Since 1980, the Central Valley's population has nearly doubled to 3.8 million people. It is expected to increase to 6 million by 2020. Statewide population growth, anticipated reductions in Colorado River water deliveries, drought, and the ecological crisis in the Sacramento-San Joaquin Delta have created an intense demand for water. Tools and information can be used to help manage the Central Valley aquifer system, an important State and national resource.

Groundwater-quality data in the Western San Joaquin Valley study unit, 2010 - Results from the California GAMA Program

Science.gov (United States)

Mathany, Timothy M.; Landon, Matthew K.; Shelton, Jennifer L.; Belitz, Kenneth

2013-01-01

Groundwater quality in the approximately 2,170-square-mile Western San Joaquin Valley (WSJV) study unit was investigated by the U.S. Geological Survey (USGS) from March to July 2010, as part of the California State Water Resources Control Board (SWRCB) Groundwater Ambient Monitoring and Assessment (GAMA) Program's Priority Basin Project (PBP). The GAMA-PBP was developed in response to the California Groundwater Quality Monitoring Act of 2001 and is being conducted in collaboration with the SWRCB and Lawrence Livermore National Laboratory (LLNL). The WSJV study unit was the twenty-ninth study unit to be sampled as part of the GAMA-PBP. The GAMA Western San Joaquin Valley study was designed to provide a spatially unbiased assessment of untreated-groundwater quality in the primary aquifer system, and to facilitate statistically consistent comparisons of untreated groundwater quality throughout California. The primary aquifer system is defined as parts of aquifers corresponding to the perforation intervals of wells listed in the California Department of Public Health (CDPH) database for the WSJV study unit. Groundwater quality in the primary aquifer system may differ from the quality in the shallower or deeper water-bearing zones; shallow groundwater may be more vulnerable to surficial contamination. In the WSJV study unit, groundwater samples were collected from 58 wells in 2 study areas (Delta-Mendota subbasin and Westside subbasin) in Stanislaus, Merced, Madera, Fresno, and Kings Counties. Thirty-nine of the wells were selected by using a spatially distributed, randomized grid-based method to provide statistical representation of the study unit (grid wells), and 19 wells were selected to aid in the understanding of aquifer-system flow and related groundwater-quality issues (understanding wells). The groundwater samples were analyzed for organic constituents (volatile organic compounds [VOCs], low-level fumigants, and pesticides and pesticide degradates

Chemistry of uranium in evaporation pond sediment in the San Joaquin Valley, California, USA, using x-ray fluorescence and XANES techniques

International Nuclear Information System (INIS)

Duff, M.C.; Amrhein, C.; Bertsch, P.M.; Hunter, D.B.

1997-01-01

Evaporation ponds in the San Joaquin Valley (SJV), CA, used for the disposal of irrigation drainage waters, contain elevated levels of uranium. The ponds are filled periodically and support algae which upon evaporation become incorporated in the sediments as layers of decaying organic matter. This rich source of organic matter promotes reducing conditions in the sediments. Our research was conducted to characterize oxidation/reduction reactions that affect soluble and sediment U(IV)/U(VI) concentrations in the SJV ponds. Studies were done to (1) determine soluble U(Vl)/U(IV) in waters in contact with a pond sediment subjected to changes in redox status, (2) observe U solid oxidation state as a reducing pond sediment underwent (in vitro) oxidation, and (3) determine U solid oxidation state with respect to depth in pond surface sediment layers. Low pressure ion-exchange chromatography with an eluent of 0.125 M H 2 C 2 O 4 /0.25 M HNO 3 was used for the separation of U(IV) and U(VI) oxidation states in the drainage waters. Soluble U(VI) and U(IV) coexisted in sediment suspensions exposed to changes in redox potential (Eh) (-260 mV to +330 mV), and U(VI) was highly soluble in the oxidized, surface pond sediments. X-ray near edge absorption spectroscopy (XANES) showed that the U solid phases were 25% U(IV) and 75% U(VI) and probably a mixed solid [U 3 O 8(s) ] in highly reducing pond sediments. Sediment U(IV) increased slightly with depth in the surface pond sediment layers suggesting a gradual reduction of U(VI) to U(IV) with time. Under oxidized conditions, this mixed oxidation-state solid was highly soluble. 59 refs., 6 figs., 1 tab

Elements of an environmental decision support system for seasonal wetland salt management in a river basin subjected to water quality regulation

Energy Technology Data Exchange (ETDEWEB)

Quinn, N.W.T.

2009-06-01

Seasonally managed wetlands in the Grasslands Basin on the west-side of California's San Joaquin Valley provide food and shelter for migratory wildfowl during winter months and sport for waterfowl hunters during the annual duck season. Surface water supply to these wetlands contain salt which, when drained to the San Joaquin River during the annual drawdown period, can negatively impact water quality and cause concern to downstream agricultural riparian water diverters. Recent environmental regulation, limiting discharges salinity to the San Joaquin River and primarily targeting agricultural non-point sources, now also targets return flows from seasonally managed wetlands. Real-time water quality management has been advocated as a means of continuously matching salt loads discharged from agricultural, wetland and municipal operations to the assimilative capacity of the San Joaquin River. Past attempts to build environmental monitoring and decision support systems (EDSS's) to implement this concept have enjoyed limited success for reasons that are discussed in this paper. These reasons are discussed in the context of more general challenges facing the successful implementation of a comprehensive environmental monitoring, modelling and decision support system for the San Joaquin River Basin.

Assessing the solubility controls on vanadium in groundwater, northeastern San Joaquin Valley, CA

Science.gov (United States)

Wright, Michael T.; Stollenwerk, Kenneth G.; Belitz, Kenneth

2014-01-01

The solubility controls on vanadium (V) in groundwater were studied due to concerns over possible harmful health effects of ingesting V in drinking water. Vanadium concentrations in the northeastern San Joaquin Valley ranged from 25 μg/L) and lowest in samples collected from anoxic groundwater (70% 2VO4−. Adsorption/desorption reactions with mineral surfaces and associated oxide coatings were indicated as the primary solubility control of V5+ oxyanions in groundwater. Environmental data showed that V concentrations in oxic groundwater generally increased with increasing groundwater pH. However, data from adsorption isotherm experiments indicated that small variations in pH (7.4–8.2) were not likely as an important a factor as the inherent adsorption capacity of oxide assemblages coating the surface of mineral grains. In suboxic groundwater, accurate SM modeling was difficult since Eh measurements of source water were not measured in this study. Vanadium concentrations in suboxic groundwater decreased with increasing pH indicating that V may exist as an oxycationic species [e.g. V(OH)3+]. Vanadium may complex with dissolved inorganic and organic ligands under suboxic conditions, which could alter the adsorption behavior of V in groundwater. Speciation modeling did not predict the existence of V-inorganic ligand complexes and organic ligands were not collected as part of this study. More work is needed to determine processes governing V solubility under suboxic groundwater conditions. Under anoxic groundwater conditions, SM predicts that aqueous V exists as the uncharged V(OH)3 molecule. However, exceedingly low V concentrations show that V is sparingly soluble in anoxic conditions. Results indicated that V may be precipitating as V3+- or mixed V3+/Fe3+-oxides in anoxic groundwater, which is consistent with results of a previous study. The fact that V appears insoluble in anoxic (Fe reducing) redox conditions indicates that the behavior of V is different than

Regional and Large-Scale Climate Influences on Tree-Ring Reconstructed Null Zone Position in San Francisco Bay

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Stahle, D.; Griffin, D.; Cleaveland, M.; Fye, F.; Meko, D.; Cayan, D.; Dettinger, M.; Redmond, K.

2007-05-01

A new network of 36 moisture sensitive tree-ring chronologies has been developed in and near the drainage basins of the Sacramento and San Joaquin Rivers. The network is based entirely on blue oak (Quercus douglasii), which is a California endemic found from the lower forest border up into the mixed conifer zone in the Coast Ranges, Sierra Nevada, and Cascades. These blue oak tree-ring chronologies are highly correlated with winter-spring precipitation totals, Sacramento and San Joaquin streamflow, and with seasonal variations in salinity and null zone position in San Francisco Bay. Null zone is the non-tidal bottom water location where density-driven salinity and river-driven freshwater currents balance (zero flow). It is the area of highest turbidity, water residence time, sediment accumulation, and net primary productivity in the estuary. Null zone position is measured by the distance from the Golden Gate of the 2 per mil bottom water isohaline and is primarily controlled by discharge from the Sacramento and San Joaquin Rivers (and ultimately by winter-spring precipitation). The location of the null zone is an estuarine habitat indicator, a policy variable used for ecosystem management, and can have a major impact on biological resources in the San Francisco estuary. Precipitation-sensitive blue oak chronologies can be used to estimate null zone position based on the strong biogeophysical interaction among terrestrial, aquatic, and estuarine ecosystems, orchestrated by precipitation. The null zone reconstruction is 626-years long and provides a unique long term perspective on the interannual to decadal variability of this important estuarine habitat indicator. Consecutive two-year droughts (or longer) allow the null zone to shrink into the confined upper reaches of Suisun Bay, causing a dramatic reduction in phytoplankton production and favoring colonization of the estuary by marine biota. The reconstruction indicates an approximate 10 year recurrence interval

Control strategies for the reduction of airborne particulate nitrate in California's San Joaquin Valley

Science.gov (United States)

Kleeman, Michael J.; Ying, Qi; Kaduwela, Ajith

The effect of NO x, volatile organic compound (VOC), and NH 3 emissions control programs on the formation of particulate ammonium nitrate in the San Joaquin Valley (SJV) was examined under the typical winter conditions that existed on 4-6 January, 1996. The UCD/CIT photochemical transport model was used for this study so that the source origin of primary particulate matter and secondary particulate matter could be identified. When averaged across the entire SJV, the model results predict that 13-18% of the reactive nitrogen (NO y=NO x+reaction products of NO x) emitted from local sources within the SJV was converted to nitrate at the ground level. Each gram of NO x emitted locally within the SJV (expressed as NO 2) produced 0.23-0.31 g of particulate ammonium nitrate (NH 4NO 3), which is much smaller than the maximum theoretical yield of 1.7 g of NH 4NO 3 per gram of NO 2. The fraction of reactive nitrogen converted to nitrate varied strongly as a function of location. Urban regions with large amounts of fresh NO emissions converted little reactive nitrogen to nitrate, while remote areas had up to 70% conversion (equivalent to approximately 1.2 g of NH 4NO 3 per gram of NO 2). The use of a single spatially averaged ratio of NH 4NO 3/NO x as a predictor of how changes to NO x emissions would affect particulate nitrate concentrations would not be accurate at all locations in the SJV under the conditions studied. The largest local sources of particulate nitrate in the SJV were predicted to be diesel engines and catalyst equipped gasoline engines under the conditions experienced on 6 January, 1996. Together, these sources accounted for less than half of the ground-level nitrate aerosol in the SJV. The remaining fraction of the aerosol nitrate originated from reactive nitrogen originally released upwind of the SJV. The majority of this upwind reactive nitrogen was already transformed to nitrate by the time it entered the SJV. The effect of local emissions controls on

Fine-Scale Distributions of Zooplankton in the Northern San Francisco Estuary

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Wim Kimmerer

2016-10-01

Full Text Available doi: http://dx.doi.org/10.15447/sfews.2016v14iss3art2 We studied zooplankton distributions in the upper San Francisco Estuary at nested scales of tens to thousands of meters. The purposes of the study were to assess how well the Interagency Ecological Program (IEP zooplankton monitoring represents abundance, and to investigate the variability of plankton on scales similar to those of foraging by fish. Samples were taken at three sites in the western Sacramento–San Joaquin Delta. We took 18 sets of six samples each with a plankton net along transects from near shore to center channel, and six sets of ten samples in the vicinity of a drifter either in mid-channel or near shore. Sampling took place in June–July 2014 during neap and spring tides, ebb and flood, day and night (transects only. Analysis focused on three common copepod species. Transect samples showed little consistent variation along transects, except that Pseudodiaptomus forbesi was less abundant nearshore than offshore by day at Big Break, the most landward site. The ratio of adults to adults + copepodites was strongly and positively related to turbidity by day but not by night, indicating demersal behavior. Drifter samples showed a minimum standard deviation of log10 sample counts of about 0.1, indicating that about two-thirds of replicate abundance values were within 80 % to 125% of the mean. A measure of difference between plankton samples at pairs of sample points was unrelated to distance between sample points for drifter samples, weakly related along transects for Limnoithona spp. stages, and strongly related for P. forbesi mainly because of the along-transect gradients at Big Break. The IEP sampling program is representative of plankton abundance except for demersal organisms, which can be ten-fold more abundant by night than by day. Small planktivorous fish could forage in patches of up to ~25% higher abundance than the mean.

Riverine Nutrient Trends in the Sacramento and San Joaquin Basins, California: A Comparison to State and Regional Water Quality Policies

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Brandon Schlegel

2015-12-01

Full Text Available doi: http://dx.doi.org/1015447/sfews.2015v13iss4art2Non-point source (NPS contaminant control strategies were initiated in California in the late 1980s under the authority of the State Porter–Cologne Act and eventually for the development of total maximum daily load (TMDL plans, under the federal Clean Water Act. Most of the NPS TMDLs developed for California’s Central Valley (CV region were related to pesticides, but not nutrients. Efforts to reduce pesticide loads and concentrations began in earnest around 1990. The NPS control strategies either encouraged or mandated the use of management practices (MPs. Although TMDLs were largely developed for pesticides, the resultant MPs might have affected the runoff of other potential contaminants (such as nutrients. This study evaluates the effect of agricultural NPS control strategies implemented in California’s CV before and between 1990 and 2013, on nutrients, by comparing trends in surface-water concentrations and loads. In general, use of MPs was encouraged during a “voluntary” period (1990 to 2004 and mandated during an “enforcement” period (2004 to 2013. Nutrient concentrations, loads, and trends were estimated by using a recently developed Weighted Regressions on Time, Discharge, and Season (WRTDS model. Sufficient total phosphorus (TP, total nitrogen (TN, and nitrate (NO3 data were available to compare the voluntary and enforcement periods for twelve sites within the lower Sacramento and San Joaquin basins. Ammonia concentrations and fluxes were evaluated at a subset of these sites. For six of these sites, flow-normalized mean annual concentrations of TP or NO3 decreased at a faster rate during the enforcement period than during the voluntary period. Concentration changes during similar years and ranges of flow conditions suggest that MPs designed for pesticides may also have reduced nutrient loads. Results show that enforceable NPS policies, and accelerated MP implementation

Impacts of habitat loss, climate change and pesticide exposure on kit fox populations

Science.gov (United States)

Background / Question / Methods The San Joaquin kit fox is an endangered sub-species in decline due primarily to loss of habitat. This small, desert-adapted fox was once widely distributed across the floor of the southern San Joaquin Valley, but agriculture and development have ...

Conservation of Native Fishes of the San Francisco Estuary: Considerations for Artificial Propagation of Chinook Salmon, Delta Smelt, and Green Sturgeon

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Joshua A. Israel

2011-04-01

Full Text Available Many native fishes in the San Francisco Estuary and its watersheds have reached all-time low abundances. Some of these declining species (e.g., Chinook salmon Oncorhynchus tschawytscha have been under artificial propagation for decades. For others (e.g., delta smelt, Hypomesus transpacificus, and green sturgeon, Acipenser medirostris, this management option is just beginning to be discussed and implemented. Propagation strategies, in which organisms spend some portion of their lives in captivity, pose well-documented genetic and ecological threats to natural populations. Negative impacts of propagation have been documented for all Central Valley Chinook salmon runs, but limited efforts have been made to adapt hatchery operations to minimize the genetic and ecological threats caused by propagated fishes. A delta smelt propagation program is undergoing intensive design and review for operations and monitoring. However, if limiting factors facing this species in its estuarine habitat are not effectively addressed, captive propagation may not be a useful conservation approach, regardless of how carefully the propagation activity is designed or monitored. Scientifically defensible, ecologically based restoration programs that include monitoring and research aimed at quantifying natural population vital rates should be fully implemented before there is any attempt to supplement natural populations of delta smelt. Green sturgeon are also likely to face risks from artificial propagation if a large–scale program is implemented before this species’ limiting factors are better understood. In each of these cases, restoring habitats, and reducing loss from human actions, are likely to be the best strategy for rebuilding and supporting self–sustaining populations.

Nest-site habitat of cavity-nesting birds at the San Joaquin Experimental Range

Science.gov (United States)

Kathryn L. Purcell; Jared. Verner

2008-01-01

Detailed information about the nesting habitats of birds, including those needed for successful nesting, can provide a better understanding of the ecological factors that permit coexistence of different species and may aid in conservation efforts. From 1989 through 1994, we studied the nesting habitat of secondary cavity-nesting birds in oak woodlands at the San...

Wetland Flow and Salinity Budgets and Elements of a Decision Support System toward Implementation of Real-Time Seasonal Wetland Salinity Management

Energy Technology Data Exchange (ETDEWEB)

Quinn, N.W.T.; Ortega, R.; Rahilly, P.; Johnson, C.B.

2011-12-17

The project has provided science-based tools for the long-term management of salinity in drainage discharges from wetlands to the San Joaquin River. The results of the project are being used to develop best management practices (BMP) and a decision support system to assist wetland managers adjust the timing of salt loads delivered to the San Joaquin River during spring drawdown. Adaptive drainage management scheduling has the potential to improve environmental compliance with salinity objectives in the Lower San Joaquin River by reducing the frequency of violation of Vernalis salinity standards, especially in dry and critically dry years. The paired approach to project implementation whereby adaptively managed and traditional practices were monitored in a side-by-side fashion has provided a quantitative measure of the impacts of the project on the timing of salt loading to the San Joaquin River. The most significant accomplishments of the project has been the technology transfer to wetland biologists, ditch tenders and water managers within the Grasslands Ecological Area. This “learning by doing” has build local community capacity within the Grassland Water District and California Department of Fish and Game providing these institutions with new capability to assess and effectively manage salinity within their wetlands while simultaneously providing benefits to salinity management of the San Joaquin River.

Potential Effects of Organic Carbon Production on Ecosystems and Drinking Water Quality

Directory of Open Access Journals (Sweden)

Larry R. Brown

2003-10-01

Full Text Available Restoration of tidal wetlands in the Sacramento-San Joaquin Delta (Delta is an important component of the Ecosystem Restoration Program of the CALFED Bay-Delta Program (CALFED. CALFED is a collaborative effort among state and federal agencies to restore the ecological health and improve water management of the Delta and San Francisco Bay (Bay. Tidal wetland restoration is intended to provide valuable habitat for organisms and to improve ecosystem productivity through export of various forms of organic carbon, including both algae and plant detritus. However, the Delta also provides all or part of the drinking water for over 22 million Californians. In this context, increasing sources of organic carbon may be a problem because of the potential increase in the production of trihalomethanes and other disinfection by-products created during the process of water disinfection. This paper reviews the existing information about the roles of organic carbon in ecosystem function and drinking water quality in the Bay-Delta system, evaluates the potential for interaction, and considers major uncertainties and potential actions to reduce uncertainty. In the last 10 years, substantial progress has been made on the role of various forms of organic carbon in both ecosystem function and drinking water quality; however, interactions between the two have not been directly addressed. Several ongoing studies are beginning to address these interactions, and the results from these studies should reduce uncertainty and provide focus for further research.

Geophysical surveying in the Sacramento Delta for earthquake hazard assessment and measurement of peat thickness

Science.gov (United States)

Craig, M. S.; Kundariya, N.; Hayashi, K.; Srinivas, A.; Burnham, M.; Oikawa, P.

2017-12-01

Near surface geophysical surveys were conducted in the Sacramento-San Joaquin Delta for earthquake hazard assessment and to provide estimates of peat thickness for use in carbon models. Delta islands have experienced 3-8 meters of subsidence during the past century due to oxidation and compaction of peat. Projected sea level rise over the next century will contribute to an ongoing landward shift of the freshwater-saltwater interface, and increase the risk of flooding due to levee failure or overtopping. Seismic shear wave velocity (VS) was measured in the upper 30 meters to determine Uniform Building Code (UBC)/ National Earthquake Hazard Reduction Program (NEHRP) site class. Both seismic and ground penetrating radar (GPR) methods were employed to estimate peat thickness. Seismic surface wave surveys were conducted at eight sites on three islands and GPR surveys were conducted at two of the sites. Combined with sites surveyed in 2015, the new work brings the total number of sites surveyed in the Delta to twenty.Soil boreholes were made at several locations using a hand auger, and peat thickness ranged from 2.1 to 5.5 meters. Seismic surveys were conducted using the multichannel analysis of surface wave (MASW) method and the microtremor array method (MAM). On Bouldin Island, VS of the surficial peat layer was 32 m/s at a site with pure peat and 63 m/s at a site peat with higher clay and silt content. Velocities at these sites reached a similar value, about 125 m/s, at a depth of 10 m. GPR surveys were performed at two sites on Sherman Island using 100 MHz antennas, and indicated the base of the peat layer at a depth of about 4 meters, consistent with nearby auger holes.The results of this work include VS depth profiles and UBC/NEHRP site classifications. Seismic and GPR methods may be used in a complementary fashion to estimate peat thickness. The seismic surface wave method is a relatively robust method and more effective than GPR in many areas with high clay

An updated conceptual model of Delta Smelt biology: Our evolving understanding of an estuarine fish

Science.gov (United States)

Baxter, Randy; Brown, Larry R.; Castillo, Gonzalo; Conrad, Louise; Culberson, Steven D.; Dekar, Matthew P.; Dekar, Melissa; Feyrer, Frederick; Hunt, Thaddeus; Jones, Kristopher; Kirsch, Joseph; Mueller-Solger, Anke; Nobriga, Matthew; Slater, Steven B.; Sommer, Ted; Souza, Kelly; Erickson, Gregg; Fong, Stephanie; Gehrts, Karen; Grimaldo, Lenny; Herbold, Bruce

2015-01-01

The main purpose of this report is to provide an up-to-date assessment and conceptual model of factors affecting Delta Smelt (Hypomesus transpacificus) throughout its primarily annual life cycle and to demonstrate how this conceptual model can be used for scientific and management purposes. The Delta Smelt is a small estuarine fish that only occurs in the San Francisco Estuary. Once abundant, it is now rare and has been protected under the federal and California Endangered Species Acts since 1993. The Delta Smelt listing was related to a step decline in the early 1980s; however, population abundance decreased even further with the onset of the “pelagic organism decline” (POD) around 2002. A substantial, albeit short-lived, increase in abundance of all life stages in 2011 showed that the Delta Smelt population can still rebound when conditions are favorable for spawning, growth, and survival. In this report, we update previous conceptual models for Delta Smelt to reflect new data and information since the release of the last synthesis report about the POD by the Interagency Ecological Program for the San Francisco Estuary (IEP) in 2010. Specific objectives include:

Kesterson crisis: Sorting out the facts

International Nuclear Information System (INIS)

Benson, S.M.; Delamore, M.; Hoffman, S.

1990-07-01

The Kesterson Reservoir was planned as a regulating facility to control drainage water discharges into the San Joaquin-Scaramento River Delta from the ''San Luis Drain'' which was to dispose of salt-ladin agricultural water. Anticipated environmental impacts of the Kesterson operations focused almost exclusively on problems related to seepage and water-logging of nearby lands. Reuse of drainage water for wetlands focused on excessive salinity. Drainage water entered the reservoir in 1978. By 1983 elevated levels of selenium were found with selenium poisoning causing deformed embryos of water birds, adult bird mortality and their poor reproductive success. An estimated 9000 kg of selenium was delivered to Kesterson between 1981 to 1986. This paper details the chronology of the Kesterson crisis and environmental remediation. 20 refs., 1 fig

California Levee Risk, Now and in the Future:Identifying Research and Tool Development Needs

Energy Technology Data Exchange (ETDEWEB)

Newmark, R L; Hanemann, M; Farber, D

2006-11-28

The Center for Catastrophic Risk Management (CCRM) and the California Center for Environmental Law and Policy (CCELP) at UC Berkeley and the Lawrence Livermore National Laboratory (LLNL) joined together to cosponsor a workshop to define research requirements to mitigate the hazards facing the Sacramento-San Joaquin Delta Levee system. The Workshop was intended to provide a forum to (1) Report assessments of current vulnerabilities facing the levees, such as structural failure, seismic loading, flooding, terrorism; (2) Consider longer term challenges such as climate change, sea level rise; and (3) Define research requirements to fill gaps in knowledge and reduce uncertainties in hazard assessments.

Crustal structure of the coastal and marine San Francisco Bay region, California

Science.gov (United States)

Parsons, Tom

2002-01-01

As of the time of this writing, the San Francisco Bay region is home to about 6.8 million people, ranking fifth among population centers in the United States. Most of these people live on the coastal lands along San Francisco Bay, the Sacramento River delta, and the Pacific coast. The region straddles the tectonic boundary between the Pacific and North American Plates and is crossed by several strands of the San Andreas Fault system. These faults, which are stressed by about 4 cm of relative plate motion each year, pose an obvious seismic hazard.

Chlorinated hydrocarbon pesticides and polychlorinated biphenyls in sediment cores from San Francisco Bay

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Venkatesan, M.I.; De Leon, R. P.; VanGeen, A.; Luoma, S.N.

1999-01-01

Sediment cores of known chronology from Richardson and San Pablo Bays in San Francisco Bay, CA, were analyzed for a suite of chlorinated hydrocarbon pesticides and polychlorinated biphenyls to reconstruct a historic record of inputs. Total DDTs (DDT = 2,4'- and 4,4'-dichlorodiphenyltrichloroethane and the metabolites, 2,4'- and 4,4'-DDE, -DDD) range in concentration from 4-21 ng/g and constitute a major fraction (> 84%) of the total pesticides in the top 70 cm of Richardson Bay sediment. A subsurface maximum corresponds to a peak deposition date of 1969-1974. The first measurable DDT levels are found in sediment deposited in the late 1930's. The higher DDT inventory in the San Pablo relative to the Richardson Bay core probably reflects the greater proximity of San Pablo Bay to agricultural activities in the watershed of the Sacramento and San Joaquin rivers. Total polychlorinated biphenyls (PCBs) occur at comparable levels in the two Bays (inventories in San Pablo Bay are about a factor of four higher in the last four decades than in Richardson Bay, suggesting a distribution of inputs not as strongly weighed towards the upper reaches of the estuary as DDTs. The shallower subsurface maximum in PCBs compared to DDT in the San Pablo Bay core is consistent with the imposition of drastic source control measures four these constituents in 1970 and 1977 respectively. The observed decline in DDT and PCB levels towards the surface of both cores is consistent with a dramatic drop in the input of these pollutants once the effect of sediment resuspension and mixing is taken into account.

Heavy mineral analysis for assessing the provenance of sandy sediment in the San Francisco Bay Coastal System

Science.gov (United States)

Wong, Florence L.; Woodrow, Donald L.; McGann, Mary

2013-01-01

Heavy or high-specific gravity minerals make up a small but diagnostic component of sediment that is well suited for determining the provenance and distribution of sediment transported through estuarine and coastal systems worldwide. By this means, we see that surficial sand-sized sediment in the San Francisco Bay Coastal System comes primarily from the Sierra Nevada and associated terranes by way of the Sacramento and San Joaquin Rivers and is transported with little dilution through the San Francisco Bay and out the Golden Gate. Heavy minerals document a slight change from the strictly Sierran-Sacramento mineralogy at the confluence of the two rivers to a composition that includes minor amounts of chert and other Franciscan Complex components west of Carquinez Strait. Between Carquinez Strait and the San Francisco Bar, Sierran sediment is intermingled with Franciscan-modified Sierran sediment. The latter continues out the Gate and turns southward towards beaches of the San Francisco Peninsula. The Sierran sediment also fans out from the San Francisco Bar to merge with a Sierran province on the shelf in the Gulf of the Farallones. Beach-sand sized sediment from the Russian River is transported southward to Point Reyes where it spreads out to define a Franciscan sediment province on the shelf, but does not continue southward to contribute to the sediment in the Golden Gate area.

Factors Contributing to the Interrupted Decay of Hurricane Joaquin (2015) in a Moderate Vertical Wind Shear Environment

Science.gov (United States)

2017-06-01

11  C.  TCI MISSIONS INTO HURRICANE JOAQUIN ............................. 13  III.  DATA AND METHODOLOGY ...October (Figure 12) indicated that the convection in Joaquin had become more organized with an enshrouded eye and rainbands spiraling outward on the...mission. Note that the intensity of Joaquin was still 75 kt at 0600 UTC 6 October (Table 1). 25 III. DATA AND METHODOLOGY A. TCI FIELD PROGRAM

7 CFR 920.131 - Redistricting of kiwifruit districts.

Science.gov (United States)

2010-01-01

... include the counties of San Francisco, San Mateo, Santa Cruz, Contra Costa, Alameda, Santa Clara, Monterey, San Benito, San Joaquin, Calaveras, Alpine, Mono, Tuolumne, Stanislaus, Merced, Mariposa, Madera, and...

Evaluación del impacto socioeconómico de la Reserva de la Biosfera Alto Golfo de California y Delta del Río Colorado en la actividad pesquera ribereña de San Felipe, Baja California, México

OpenAIRE

Carlos Israel Vázquez León; José Luis Fermán Almada

2010-01-01

Desde 1993 las comunidades de Puerto Peñasco y Golfo de Santa Clara, Sonora, y San Felipe, Baja California, en México, están vinculadas por la Reserva de la Biosfera Alto Golfo de California y Delta del Río Colorado; creada para proteger varias especies endémicas, entre ellas al mamífero conocido como vaquita marina (Phocoenasinus) y la totoaba (Totoaba macdonaldii).Aquí se analiza el efecto socioeconómico que en la pesca de San Felipe tuvo en 1994 y 2002 la creación de la reserva; concebida ...

Shifting shoals and shattered rocks : How man has transformed the floor of west-central San Francisco Bay

Science.gov (United States)

Chin, John L.; Wong, Florence L.; Carlson, Paul R.

2004-01-01

San Francisco Bay, one of the world's finest natural harbors and a major center for maritime trade, is referred to as the 'Gateway to the Pacific Rim.' The bay is an urbanized estuary that is considered by many to be the major estuary in the United States most modified by man's activities. The population around the estuary has grown rapidly since the 1850's and now exceeds 7 million people. The San Francisco Bay area's economy ranks as one of the largest in the world, larger even than that of many countries. More than 10 million tourists are estimated to visit the bay region each year. The bay area's population and associated development have increasingly changed the estuary and its environment. San Francisco Bay and the contiguous Sacramento-San Joaquin Delta encompass roughly 1,600 square miles (4,100 km2) and are the outlet of a major watershed that drains more than 40 percent of the land area of the State of California. This watershed provides drinking water for 20 million people (two thirds of the State's population) and irrigates 4.5 million acres of farmland and ranchland. During the past several decades, much has been done to clean up the environment and waters of San Francisco Bay. Conservationist groups have even bought many areas on the margins of the bay with the intention of restoring them to a condition more like the natural marshes they once were. However, many of the major manmade changes to the bay's environment occurred so long ago that the nature of them has been forgotten. In addition, many changes continue to occur today, such as the introduction of exotic species and the loss of commercial and sport fisheries because of declining fish populations. The economy and population of the nine counties that surround the bay continue to grow and put increasing pressure on the bay, both direct and indirect. Therefore, there are mixed signals for the future health and welfare of San Francisco Bay. The San Francisco Bay estuary consists of three

7 CFR 920.12 - District.

Science.gov (United States)

2010-01-01

.... (e) District 5 shall include the counties of San Joaquin, Calaveras, Tuolumne, Merced, Stanislaus, Contra Costa, El Dorado, Amador, Sacramento, Alpine, San Francisco, Alameda, San Mateo, Santa Clara...

Mercury methylation, export and bioaccumulation in rice agriculture - model results from comparative and experimental studies in 3 regions of the California Delta, USA

Science.gov (United States)

Windham-Myers, L.; Fleck, J.; Eagles-Smith, C.; Ackerman, J.

2013-12-01

Seasonally flooded wetland ecosystems are often poised for mercury (Hg) methylation, thus becoming sources of methylmercury (MeHg) to in situ and downstream biota. The seasonal flooding associated with cultivation of rice (Oryza sativa) also generates MeHg, which may be stored in sediment or plants, bioaccumulated into fauna, degraded or exported, depending on hydrologic and seasonal conditions. While many U.S. waters are regulated for total Hg concentrations based on fish targets, California's Sacramento-San Joaquin Delta (Delta) will soon implement the first MeHg total maximum daily load (TMDL) control program. Since 2007, a conceptual model (DRERIP-MCM) and several ecosystem-level studies have been advanced to better understand the mechanisms behind Hg methylation, export and bioaccumulation within Delta wetlands, including rice agriculture. Three Delta rice-growing regions (Yolo Bypass, Cosumnes River, Central Delta) of varied soil characteristics, mining influences and hydrology, were monitored over full crop years to evaluate annual MeHg dynamics. In addition to fish tissue Hg accumulation, a broad suite of biogeochemical and hydrologic indices were assessed and compared between wetland types, seasons, and regions. In general, Delta rice fields were found to export MeHg during the post-harvest winter season, and promote MeHg uptake in fish and rice grain during the summer growing season. As described in a companion presentation (Eagles-Smith et al., this session), the experimental Cosumnes River study suggests that rice-derived dissolved organic carbon (DOC) fuels MeHg production and uptake into aquatic foodwebs. Explicit DRERIP-MCM linkages for the role of rice-DOC in MeHg production, export and bioaccumulation were verified across two summers (2011, 2012): rice biomass and root productivity influenced porewater DOC availability and microbial processes, which drove sediment MeHg production and flux to surface water, promoting MeHg bioaccumulation in fish

Delta smelt habitat in the San Francisco Estuary: A reply to Manly, Fullerton, Hendrix, and Burnham’s “Comments on Feyrer et al. Modeling the effects of future outflow on the abiotic habitat of an imperiled estuarine fish"

Science.gov (United States)

Feyrer, Frederick V.; Newman, Ken B.; Nobriga, Matthew; Sommer, Ted

2016-01-01

Manly et al. (2015) commented on the approach we (Feyrer et al. 2011) used to calculate an index of the abiotic habitat of delta smelt Hypomesus transpacificus. The delta smelt is an annual fish species endemic to the San Francisco Estuary (SFE) in California, USA. Conserving the delta smelt population while providing reliability to California’s water supply with water diverted from the SFE ecosystem is a major management and policy issue. Feyrer et al. (2011) evaluated historic and projected future abiotic habitat conditions for delta smelt. Manly et al. (2015) specifically commented regarding the following: (1) use of an independent abundance estimate, (2) spatial bias in the habitat index, and (3) application of the habitat index to future climate change projections. Here, we provide our reply to these three topics. While we agree that some of the concepts raised by Manly et al. (2015) have the potential to improve habitat assessments and their application to climate change scenarios as knowledge is gained, we note that the Feyrer et al. (2011) delta smelt habitat index is essentially identical to one reconstructed using Manly et al.’s (2015) preferred approach (their model 8), as shown here in Fig. 1.

Environmental Assessment for a Security Forces Armory/Combat Arms Facility

Science.gov (United States)

2005-03-21

tener), Contra Costa goldfields (Lasthenia conjugens), and the San Joaquin spearscale (Atriplex joaquiniana) – that are listed by the California Native...Plant Society as rare. The akali milkvetch and the San Joaquin spearscale are also listed as federal species of concern (Travis AFB, 2002a). The...following federally listed species have been identified at Travis AFB: • Contra Costa goldfields (Lasthenia conjugens), a federally endangered plant

75 FR 2517 - Notice of Intent To Prepare a Joint Environmental Impact Statement and Environmental Impact...

Science.gov (United States)

2010-01-15

...The action being taken is the preparation of a joint environmental impact statement/environmental impact report (EIS/EIR) for the Lower San Joaquin River Feasibility Study (LSJRFS). The EIS/EIR will be prepared in accordance with the National Environmental Policy Act (NEPA) and the California Environmental Quality Act (CEQA). The U.S. Army Corps of Engineers (USACE) will serve as lead agency for compliance with NEPA, and the San Joaquin Area Flood Control Agency (SJAFCA) will serve as lead agency for compliance with CEQA. The LSJRFS will evaluate alternatives, including a locally preferred plan, for providing flood damage reduction and ecosystem restoration along the lower (northern) portion of the San Joaquin River system in the Central Valley of California. The approximate area of the proposed action and analysis is identified in Figure 1.

Pleistocene Brawley and Ocotillo Formations: Evidence for initial strike-slip deformation along the San Felipe and San Jacinto fault zonez, Southern California

Science.gov (United States)

Kirby, S.M.; Janecke, S.U.; Dorsey, R.J.; Housen, B.A.; Langenheim, V.E.; McDougall, K.A.; Steeley, A.N.

2007-01-01

We examine the Pleistocene tectonic reorganization of the Pacific-North American plate boundary in the Salton Trough of southern California with an integrated approach that includes basin analysis, magnetostratigraphy, and geologic mapping of upper Pliocene to Pleistocene sedimentary rocks in the San Felipe Hills. These deposits preserve the earliest sedimentary record of movement on the San Felipe and San Jacinto fault zones that replaced and deactivated the late Cenozoic West Salton detachment fault. Sandstone and mudstone of the Brawley Formation accumulated between ???1.1 and ???0.6-0.5 Ma in a delta on the margin of an arid Pleistocene lake, which received sediment from alluvial fans of the Ocotillo Formation to the west-southwest. Our analysis indicates that the Ocotillo and Brawley formations prograded abruptly to the east-northeast across a former mud-dominated perennial lake (Borrego Formation) at ???1.1 Ma in response to initiation of the dextral-oblique San Felipe fault zone. The ???25-km-long San Felipe anticline initiated at about the same time and produced an intrabasinal basement-cored high within the San Felipe-Borrego basin that is recorded by progressive unconformities on its north and south limbs. A disconformity at the base of the Brawley Formation in the eastern San Felipe Hills probably records initiation and early blind slip at the southeast tip of the Clark strand of the San Jacinto fault zone. Our data are consistent with abrupt and nearly synchronous inception of the San Jacinto and San Felipe fault zones southwest of the southern San Andreas fault in the early Pleistocene during a pronounced southwestward broadening of the San Andreas fault zone. The current contractional geometry of the San Jacinto fault zone developed after ???0.5-0.6 Ma during a second, less significant change in structural style. ?? 2007 by The University of Chicago. All rights reserved.

75 FR 20608 - Notice of Re-Designation of the Service Delivery Area for the Cowlitz Indian Tribe

Science.gov (United States)

2010-04-20

... City (Public Law 88-358). \\5\\ Entire State of California, excluding counties of Alameda, Contra Costa..., Napa, San Benito, San Joaquin, San Luis Obispo, Santa Cruz, Solano, Stanislaus, and Ventura, is...

Suspended particulate matter flocculation in a natural tidal wetland located in the San Francisco Estuary

Science.gov (United States)

Saraceno, J.; Bergamaschi, B. A.; Wright, S. A.; Boss, E.; Downing, B. D.; Fleck, J.; Ganju, N. K.

2011-12-01

Suspended mineral and algal particles together comprise suspended particulate matter (SPM). The SPM size distribution influences the quantity and color of light penetration and the adsorption and transport of contaminants such as pesticides and metals. It is widely known that interaction with wetlands alters the size distribution and quality of particles through local primary production, differential settling and particle aggregation, however, our understanding of how tidal wetland processes affect SPM quantity and size spectra has been hampered by the difficulty of directly observing these parameters at tidal time scales. To evaluate how SPM concentration and size varied over tidal time scales and to better understand the relationship between organic matter and sediment characteristics, simultaneous measurements of dissolved organic matter, SPM concentration and organic content as well as in situ surrogates of particle concentration (turbidity, particulate attenuation, volume concentration) and particle size (laser diffraction) were carried out with measurements of current velocity (acoustic Doppler velocity meter) in the main channel of Brown's Island located in the western San Joaquin/Sacramento River Delta, CA. The study period coincided with high estuary sediment levels following a significant precipitation runoff event. In the Brown Island wetland, particle concentration and size dynamics were tied to variations in water level and velocity. Turbidity and attenuation covaried with the volume concentration of particles smaller than 33 um, which on average represented greater than 50% of particle population by volume. On average, these SPM concentration surrogates were three times higher in flood water than in ebb water; consistent with a loss of fine particles on the island. Following the highest flood tide, the decrease in fine particles was coincident with an increase in the concentration of particles larger than 130 um; a finding consistent with particle

Use of geochemical biomarkers in bottom sediment to track oil from a spill, San Francisco Bay, California

Science.gov (United States)

Hostettler, F.D.; Rapp, J.B.; Kvenvolden, K.A.

1992-01-01

In April 1988, approximately 1500 m3 of a San Joaquin Valley crude oil were accidentally released from a Shell Oil Co. refinery near Martinez, Californa. The oil flowed into Carquinez Strait and Suisun Bay in northern San Francisco Bay Sediment and oil samples were collected within a week and analysed for geochemical marker compounds in order to track the molecular signature of the oil spill in the bottom sediment. Identification of the spilled oil in the sediment was complicated by the degraded nature of the oil and the similarity of the remaining, chromatographically resolvable constituents to those already present in the sediments from anthropogenic petroleum contamination, pyrogenic sources, and urban drainage. Ratios of hopane and sterane biomarkers, and of polycyclic aromatic hydrocarbons and their alkylated derivatives best identified the oil impingement. They showed the oil impact at this early stage to be surficial only, and to be patchy even within an area of heavy oil exposure.

Riigi eelarvepoliitika peab olema neutraalne / Joaquin Almunia ; interv. Piret Reiljan

Index Scriptorium Estoniae

Almunia, Joaquin, 1948-

2008-01-01

Euroopa Komisjoni rahandusvoliniku Joaquin Almunia sõnul peaks Eesti vältima järeleandmisi eelarvepoliitikas, samuti tuleks prioriteediks seada investeeringud, mis toetavad majanduskasvu ning kasutada ära maksimaalselt Euroopa Liidu struktuurifonde

A decision support system for real-time management of dissolvedoxygen in the Stockton deep water ship channel

Energy Technology Data Exchange (ETDEWEB)

Quinn, N.W.T.; Chen, Carl W.; Stringfellow, William T.

2003-07-16

A decision support system(DSS)is under development to assistin the control and management of episodes of dissolved oxygen sag in aDeep Water Ship Channel (DWSC), located in Stockton, California. The DWSCwas formed by excavating the bed of the San Joaquin River in the 1950'sto allow navigation by ocean-going cargo ships to the Port of Stockton.The deepened channel has the effect of increasing hydraulic residencetime by a factor of ten. allowing accumulation of decaying algae andother oxygen demanding substances - which creates a barrier to themigration of anadromous fish. This problem, which manifests itself inlate summer and early autumn, is an impediment to a multimillion dollarhabitat restoration effort for the salmon fishery in the San JoaquinRiver basin (SJRB). A hydrodynamic and water quality model of the Deltaand San Joaquin River forms the basis of the DSS which will provideforecasts of dissolved oxygen sag in the DWSC and provide modelingsupport for management actions such as forced aeration to improvedissolved oxygen concentrations in the Ship Channel. A graphical userinterlace, currently used for displaying flow and salinity forecasts onthe San Joaquin River, is being adapted to allow the display of dissolvedoxygen forecasts and to encourage the formation of a stakeholder-ledentity or institution to adaptively manage the problem.

Are Wildlife Detector Dogs or People Better at Finding Desert Tortoises (Gopherus Agassizii)?

Science.gov (United States)

2008-02-01

Davenport, M.C. Smith, and J.E. Maldonado. 2003. Detection and accuracy rates of dogs trained to find scats of San Joaquin Kit Foxes (Vulpes macrotis...Herpetological Conservation and Biology 3(1):103-115. 114 Relative abundance of endangered San Joaquin Kit Foxes (Vulpes macrotis mutica) based on...trainer. She is also with the Contra Costa County (CA) Sheriff Office and oversees their bomb dog and search and rescue dog programs. JULIE YEE

Estimating Field Scale Crop Evapotranspiration using Landsat and MODIS Satellite Observations

Science.gov (United States)

Wong, A.; Jin, Y.; Snyder, R. L.; Daniele, Z.; Gao, F.

2016-12-01

Irrigation accounts for 80% of human freshwater consumption, and most of it return to the atmosphere through Evapotranspiration (ET). Given the challenges of already-stressed water resources and ground water regulation in California, a cost-effective, timely, and consistent spatial estimate of crop ET, from the farm to watershed level, is becoming increasingly important. The Priestley-Taylor (PT) approach, calibrated with field data and driven by satellite observations, shows great promise for accurate ET estimates across diverse ecosystems. We here aim to improve the robustness of the PT approach in agricultural lands, to enable growers and farm managers to tailor irrigation management based on in-field spatial variability and in-season variation. We optimized the PT coefficients for each crop type with available ET measurements from eddy covariance towers and/or surface renewal stations at six crop fields (Alfalfa, Almond, Citrus, Corn, Pistachio and Rice) in California. Good agreement was found between satellite-based estimates and field measurements of net radiation, with a RMSE of less than 36 W m-2. The crop type specific optimization performed well, with a RMSE of 30 W m-2 and a correlation of 0.81 for predicted daily latent heat flux. The calibrated algorithm was used to estimate ET at 30 m resolution over the Sacramento-San Joaquin Delta region for 2015 water year. It captures well the seasonal dynamics and spatial distribution of ET in Sacramento-San Joaquin Delta. A continuous monitoring of the dynamics and spatial heterogeneity of canopy and consumptive water use at a field scale, will help the growers to be well prepared and informed to adaptively manage water, canopy, and grove density to maximize the yield with the least amount of water.

Results of analyses of fur samples from the San Joaquin Kit Fox and associated soil and water samples from the Naval Petroleum Reserve No. 1, Tupman, California

Energy Technology Data Exchange (ETDEWEB)

Suter, G.W. II; Rosen, A.E.; Beauchamp, J.J. (Oak Ridge National Lab., TN (United States)); Kato, T.T. (EG and G Energy Measurements, Inc., Tupman, CA (United States))

1992-12-01

The purpose of this study was to determine whether analysis of the elemental content of fur from San Joaquin kit foxes (Vulpes macrotis mutica) and of water and soil from kit fox habitats could be used to make inferences concerning the cause of an observed decline in the kit fox population on Naval Petroleum Reserve No. 1 (NPR-1). Fur samples that had been collected previously from NPR-1, another oil field (NPR-2), and two sites with no oil development were subjected to neutron activation analysis. In addition, soil samples were collected from the home ranges of individual foxes from undisturbed portions of major soil types on NPR-1 and from wastewater samples were collected from tanks and sumps and subjected to neutron activation analysis. Most elemental concentrations in fur were highest at Camp Roberts and lowest on the undeveloped portions of NPR-I. Fur concentrations were intermediate on the developed oil fields but were correlated with percent disturbance and with number of wells on NPR-1 and NPR-2. The fact that most elements covaried across the range of sites suggests that some pervasive source such as soil was responsible. However, fur concentrations were not correlated with soft concentrations. The kit foxes on the developed portion of NPR-1 did not have concentrations of elements in fur relative to other sites that would account for the population decline in the early 1980s. The oil-related elements As, Ba, and V were elevated in fox fur from oil fields, but only As was sufficiently elevated to suggest a risk of toxicity in individual foxes. However, arsenic concentrations suggestive of sublethal toxicity were found in only 0.56% of foxes from developed oil fields, too few to account for a population decline.

Study of Movement and Seepage Along Levees Using DINSAR and the Airborne UAVSAR Instrument

Science.gov (United States)

Jones, Cathleen E.; Bawden, Gerald; Deverel, Steven; Dudas, Joel; Hensley, Scott

2012-01-01

We have studied the utility of high resolution SAR (synthetic aperture radar) for levee monitoring using UAVSAR (Uninhabited Aerial Vehicle Synthetic Aperture Radar) data collected along the dikes and levees in California's Sacramento-San Joaquin Delta and along the lower Mississippi River. Our study has focused on detecting and tracking changes that are indicative of potential problem spots, namely deformation of the levees, subsidence along the levee toe, and seepage through the levees, making use of polarimetric and interferometric SAR techniques. Here was present some results of those studies, which show that high resolution, low noise SAR imaging could supplement more traditional ground-based monitoring methods by providing early indicators of seepage and deformation.

Methylmercury cycling, bioaccumulation, and export from agricultural and non-agricultural wetlands in the Yolo Bypass

Science.gov (United States)

Windham-Myers, Lisamarie; Marvin-DiPasquale, Mark; Fleck, Jacob; Alpers, Charles N.; Ackerman, Joshua T.; Eagles-Smith, Collin A.; Stricker, Craig; Stephenson, Mark; Feliz, David; Gill, Gary; Bachand, Philip; Brice, Ann; Kulakow, Robin

2010-01-01

This 18-month field study addresses the seasonal and spatial patterns and processes controlling methylmercury (MeHg) production, bioaccumulation, and export from natural and agricultural wetlands of the Yolo Bypass Wildlife Area (YBWA). The data were collected in conjuntion with a Proposition 40 grant from the State Water Resources Control Board in support of the development of Best Management Practices (BMP's) for reducing MeHg loading from agricultural lands in the wetland-dominated Yolo Bypass to the Sacramento-San Joaquin River Delta. The four managemenr-based questions addressed in this study were: 1. Is there a different among agricultural and managfed wetland types in terms of Me Hg dynamic (production, degradation, bioaccumulation, or export)?

The fog of war: Why the environmental crusade for anadromous fish species in California could disarm the State’s local vector control districts in their war against mosquitoes

Directory of Open Access Journals (Sweden)

Stephen M. Siptroth

2011-12-01

Full Text Available In California, local mosquito and vector control districts have successfully controlled mosquito and vector-borne diseases by improving drainage patterns and applying pesticides. The Bay-Delta Conservation Plan, which is a proposed habitat conservation plan for the Sacramento-San Joaquin Bay-Delta estuary, proposes to add over 70,000 acres of habitat in the Delta to improve conditions for threatened and endangered aquatic and terrestrial species. This habitat could also be a suitable mosquito breeding habitat, which will be located in close proximity to urban and suburban communities. Wetland management practices and continued pesticide applications in the Delta could mitigate the effects of a new mosquito breeding habitat. Recent legal developments, however, require districts to obtain and comply with Clean Water Act permits, which restrict the application of pesticides in or near waters of the United States. Moreover, the U.S. Environmental Protection Agency has taken the first step in a rulemaking process that could further limit or prohibit the use of certain vector control pesticides in the Delta. In the near term and until less harmful methods for mosquito control are available, local vector control districts’ application of mosquito control pesticides should be exempt from Clean Water Act permit requirements.

San Joaquin River Up-Stream DO TMDL Project Task 4: MonitoringStudy Interim Task Report #3

Energy Technology Data Exchange (ETDEWEB)

Stringfellow, William; Borglin, Sharon; Dahlgren, Randy; Hanlon,Jeremy; Graham, Justin; Burks, Remie; Hutchinson, Kathleen

2007-03-30

The purpose of the Dissolved Oxygen Total Maximum Daily LoadProject (DO TMDLProject) is to provide a comprehensive understanding ofthe sources and fate of oxygen consuming materials in the San JoaquinRiver (SJR) watershed between Channel Point and Lander Avenue (upstreamSJR). When completed, this study will provide the stakeholders anunderstanding of the baseline conditions of the basin, provide input foran allocation decision, and provide the stakeholders with a tool formeasuring the impact of any waterquality management program that may beimplemented as part of the DO TMDL process. Previous studies haveidentified algal biomass as the most significant oxygen-demandingsubstance in the DO TMDL Project study-area between of Channel Point andLander Ave onthe SJR. Other oxygen-demanding substances found in theupstream SJR include ammonia and organic carbon from sources other thanalgae. The DO TMDL Project study-area contains municipalities, dairies,wetlands, cattle ranching, irrigated agriculture, and industries thatcould potentially contribute biochemical oxygen demand (BOD) to the SJR.This study is designed to discriminate between algal BOD and othersources of BOD throughout the entire upstream SJR watershed. Algalbiomass is not a conserved substance, but grows and decays in the SJR;hence, characterization of oxygen-demanding substances in the SJR isinherently complicated and requires an integrated effort of extensivemonitoring, scientific study, and modeling. In order to achieve projectobjectives, project activities were divided into a number of Tasks withspecific goals and objectives. In this report, we present the results ofmonitoring and research conducted under Task 4 of the DO TMDL Project.The major objective of Task 4 is to collect sufficient hydrologic (flow)and water quality (WQ) data to characterize the loading of algae, otheroxygen-demanding materials, and nutrients fromindividual tributaries andsub-watersheds of the upstream SJR between Mossdale and

Analysis of Satellite and Airborne Imagery for Detection of Water Hyacinth and Other Invasive Floating Macrophytes and Tracking of Aquatic Weed Control Efficacy

Science.gov (United States)

Potter, Christopher

2016-01-01

Waterways of the Sacramento San Joaquin Delta have recently become infested with invasive aquatic weeds such as floating water hyacinth (Eichhoria crassipes) and water primrose (Ludwigia peploides). These invasive plants cause many negative impacts, including, but not limited to: the blocking of waterways for commercial shipping and boating; clogging of irrigation screens, pumps and canals; and degradation of biological habitat through shading. Zhang et al. (1997, Ecological Applications, 7(3), 1039-1053) used NASA Landsat satellite imagery together with field calibration measurements to map physical and biological processes within marshlands of the San Francisco Bay. Live green biomass (LGB) and related variables were correlated with a simple vegetation index ratio of red and near infra-red bands from Landsat images. More recently, the percent (water area) cover of water hyacinth plotted against estimated LGB of emergent aquatic vegetation in the Delta from September 2014 Landsat imagery showed an 80 percent overall accuracy. For the past two years, we have partnered with the U. S. Department of Agriculture (USDA) and the Department of Plant Sciences, University of California at Davis to conduct new validation surveys of water hyacinth and water primrose coverage and LGB in Delta waterways. A plan is underway to transfer decision support tools developed at NASA's Ames Research Center based on Landsat satellite images to improve Delta-wide integrated management of floating aquatic weeds, while reducing chemical control costs. The main end-user for this application project will be the Division of Boating and Waterways (DBW) of the California Department of Parks and Recreation, who has the responsibility for chemical control of water hyacinth in the Delta.

Polycyclic hydrocarbon biomarkers confirm selective incorporation of petroleum in soil and kangaroo rat liver samples near an oil well blowout site in the western San Joaquin Valley, California

International Nuclear Information System (INIS)

Kaplan, I.; Lu, S.T.; Lee, R.P.; Warrick, G.

1996-01-01

Following an accidental oil well blow out at an oil field in the western part of the San Joaquin Valley, soil samples and specimens of Heermann's kangaroo rats (Dipodomys heermanni) were collected from two oil-impacted areas and one control area. Fingerprinting by GC-MS and quantitative evaluation of metabolized petroleum hydrocarbons was performed on oil, soil extracts, and rat livers. A liver from a domestically raised rabbit was used as an experimental control. The results show that there is no significant incorporation of PAHs or low molecular weight n-alkanes (C 13 --C 25 ) into the liver tissues. The C 25 --C 35 n-alkane range for all soil samples, kangaroo rat livers, and rabbit liver, is dominated by a high abundance of C 27 , C 29 , C 31 , and C 33 hydrocarbons typical of epicuticular plant waxes. In all liver tissue samples, squalene, the cholesterol precursor, is the dominant hydrocarbon. Although evidence is lacking for metabolism of PAHs and paraffinic petroleum hydrocarbons, very strong evidence is available for incorporation of a set of polycyclic hydrocarbons (biomarkers) belonging to the terpane, sterane, and monoaromatic and triaromatic sterane families, identified by ion monitoring at 191, 217, 253, and 231 m/z, respectively. Because these hydrocarbons are not known to exist in the biosphere, but are only synthesized during oil- and coal-forming processes, their presence in the liver samples constitutes proof for crude oil incorporation into tissues. This conclusion is further substantiated by the selective incorporation of only the 20S enantiomer of C 28 and C 29 steranes and aromatic steranes into the livers, with the exclusion of the 20R enantiomer. The results from the study conclusively demonstrate that polycyclic hydrocarbon biomarkers provide excellent indices for proof of petroleum exposure and metabolism in some terrestrial herbivores

Open Water Processes of the San Francisco Estuary: From Physical Forcing to Biological Responses

Directory of Open Access Journals (Sweden)

Wim Kimmerer

2004-02-01

final theme is the rather heterogeneous set of results from monitoring and research in the estuary. For example, some topics have been subjects of intense activity both in research and monitoring (e.g., physical dynamics of the upper estuary, phytoplankton blooms, while others have received little attention (e.g., microzooplankton. In addition, both research and monitoring have emphasized some regions of the estuary (e.g., the Sacramento-San Joaquin Delta over others (e.g., San Pablo Bay. In addition, ecological modeling and synthesis has emphasized lower trophic levels over higher. Opportunities for restoration in the open waters of the estuary are somewhat limited by the lack of scientific basis for restoration, and the difficulty in detecting ecosystem responses in the context of high natural variability.

Method of analysis and quality-assurance practices for determination of pesticides in water by solid-phase extraction and capillary-column gas chromatography/mass spectrometry at the U.S. Geological Survey California District Organic Chemistry Laboratory, 1996-99

Science.gov (United States)

Crepeau, Kathryn L.; Baker, Lucian M.; Kuivila, Kathryn

2000-01-01

A method of analysis and quality-assurance practices were developed to study the fate and transport of pesticides in the San Francisco Bay-Estuary by the U.S. Geological Survey. Water samples were filtered to remove suspended-particulate matter and pumped through C-8 solid-phase extraction cartridges to extract the pesticides. The cartridges were dried with carbon dioxide and the pesticides were eluted with three cartridge volumes of hexane:diethyl ether (1:1) solution. The eluants were analyzed using capillary-column gas chromatography/mass spectrometry in full-scan mode. Method detection limits for pesticides ranged from 0.002 to 0.025 microgram per liter for 1-liter samples. Recoveries ranged from 44 to 140 percent for 25 pesticides in samples of organic-free reagent water and Sacramento-San Joaquin Delta and Suisun Bay water fortified at 0.05 and 0.50 microgram per liter. The estimated holding time for pesticides after extraction on C-8 solid-phase extraction cartridges ranged from 10 to 257 days.

Results of Surveys for Special Status Reptiles at the Site 300 Facilities of Lawrence Livermore National Laboratory

Energy Technology Data Exchange (ETDEWEB)

Woollett, J J

2008-09-18

The purpose of this report is to present the results of a live-trapping and visual surveys for special status reptiles at the Site 300 Facilities of Lawrence Livermore National Laboratory (LLNL). The survey was conducted under the authority of the Federal recovery permit of Swaim Biological Consulting (PRT-815537) and a Memorandum of Understanding issued from the California Department of Fish and Game. Site 300 is located between Livermore and Tracy just north of Tesla road (Alameda County) and Corral Hollow Road (San Joaquin County) and straddles the Alameda and San Joaquin County line (Figures 1 and 2). It encompasses portions of the USGS 7.5 minute Midway and Tracy quadrangles (Figure 2). Focused surveys were conducted for four special status reptiles including the Alameda whipsnake (Masticophis lateralis euryxanthus), the San Joaquin Whipsnake (Masticophis Hagellum ruddock), the silvery legless lizard (Anniella pulchra pulchra), and the California horned lizard (Phrynosoma coronanum frontale).

1979-80 Financial Statistics for Current Cost of Education... Showing San Joaquin Delta College Position...

Science.gov (United States)

DeRicco, Lawrence A.

The costs of education per unit of Average Daily Attendance (ADA) are detailed in this two-part report for 70 California community college districts for the academic year 1979-80. Both Part I, which presents data excluding non-resident ADA, and Part II, which presents figures including non-resident ADA, begin with tables which rank order the…

77 FR 26578 - Draft Environmental Impact Statement/Environmental Impact Report and Notice of Public Meeting for...

Science.gov (United States)

2012-05-04

...The Bureau of Reclamation and the San Joaquin River Exchange Contractors Water Authority have made available for public review and comment the joint draft environmental impact statement/environmental impact report (Draft EIS/EIR) for the Water Transfer Program, 2014- 2038. The proposed new transfer program would provide for the transfer and/or exchange of up to 150,000 acre-feet of substitute water from the San Joaquin River Exchange Contractors Water Authority to several potential users over a 25-year timeframe (water service years 2014- 2038).

Characterization of reactants, reaction mechanisms, and reaction products in atmospheric water droplets: fog, cloud, dew, and rain water chemistry. Final report

Energy Technology Data Exchange (ETDEWEB)

Hoffmann, M.R.; Jacob, D.J.; Waldman, J.M.; Munger, J.W.; Flagan, R.C.

1985-04-01

Analyses of ground-based fogwater collected by inertial impaction in the Los Angeles basin, the San Gabriel Mountains, and the San Joaquin Valley revealed very high concentrations of NO3 SO4 S, NH4 , and other ions, often coupled with very high acidities. Fogs and strata in the Los Angeles basin typically had pH values ranging from 2 to 4. Acidities were not as high in the San Joaquin Valley, mostly because of scavenging by the fogs of ammonia from agricultural sources. Deposition of fogwater was observed to be an important pollutant sink during stagnation episodes in the San Joaquin Valley, and may also be an important source of acid input to surfaces in some areas. Kinetic experiments showed that H2O2 is important in the oxidation of S(IV) to S(VI) at low pH. Metal-catalyzed autoxidation could also be an important source of sulfate. However, the extreme acidities observed in fogs (below pH 3) require condensation on preexistent acidic nuclei and scavenging of gaseous nitric acid. Stabilization of S(IV) in the fog was observed, and this was attributed to the formation of S(IV)-aldehyde adducts.

Managing water to protect fish: A review of California's environmental water account, 2001-2005

Science.gov (United States)

Brown, L.R.; Kimmerer, W.; Brown, R.

2009-01-01

The Sacramento-San Joaquin Delta, the landward reach of the San Francisco Estuary, provides habitat for threatened delta smelt, endangered winter-run Chinook salmon, and other species of concern. It is also the location of huge freshwater diversion facilities that entrain large numbers of fish. Reducing the entrainment of listed fishes into these facilities has required curtailment of pumping, reducing the reliability of water deliveries. We reviewed the first 5 years (2001-2005) of the Environmental Water Account (EWA), a program instituted to resolve conflicts between protecting listed fishes and providing a reliable water supply. The EWA provided fishery agencies with control over 0.2-0.4 km3 of water to be used for fish protection at no cost to users of exported water, and fish agencies guaranteed no disruption of water supply for fish protection. The EWA was successful in reducing uncertainty in water supply; however, its contribution to the recovery of listed fishes was unclear. We estimated the effectiveness of the EWA to be modest, increasing the survival of winter-run Chinook salmon by 0-6% (dependent on prescreen mortality), adult delta smelt by 0-1%, and juvenile delta smelt by 2-4%. Allocating EWA water for a single life stage of one species could provide larger gains in survival. An optimally allocated EWA of equal size to the median of the first 5 years could increase abundance of juvenile delta smelt up to 7% in the springs of dry years. If the EWA is to become a long-term program, estimates of efficacy should be refined. If the program is to be held accountable for quantitative increases in fish populations, it will be necessary to integrate scientific, possibly experimental, approaches. ?? 2008 Springer Science+Business Media, LLC.

Evaluating Ambient Concentrations and Local Emissions of Greenhouse Gases (GHGs) in the San Francisco Bay Area of California Using a Comprehensive Fixed-site and Mobile Monitoring Network

Science.gov (United States)

Guha, A.; Bower, J. P.; Martien, P. T.; Randall, S.; Young, A.; Hilken, H.; Stevenson, E.

2015-12-01

The Bay Area Air Quality Management District (hence the Air District) is the greater San Francisco Bay metropolitan region's chief air quality regulatory agency. Aligning itself with Executive Order S-3-05, the Air District has set a goal to reduce the region's GHG emissions by 80% below 1990 levels by the year 2050. The Air District's 10-point Climate Action Work Program lays out the agency's priorities, actions and coordination with regional stakeholders. The Program has three core objectives: (1) to develop a technical and monitoring program to document the region's GHG sources and related emissions, (2) to implement a policy and rule-based approach to control and regulate GHG emissions, and finally, (3) to utilize local governance, incentives and partnerships to encourage GHG emissions reductions.As part of the technical program, the Air District has set up a long term, ambient GHG monitoring network at four sites. The first site is located north and upwind of the urban core at Bodega Bay by the Pacific Coast. It mostly receives clean marine inflow and serves as the regional background site. The other three sites are strategically located at regional exit points for Bay Area plumes that presumably contain GHG enhancements from local sources. These stations are at San Martin, located south of the San Jose metropolitan area; at Patterson Pass at the cross section with California's Central Valley; and at Bethel Island at the mouth of the Sacramento-San Joaquin Delta. At all sites, carbon dioxide (CO2) and methane (CH4) are being measured continuously, along with combustion tracer CO and other air pollutants. The GHG measurements are performed with high precision and fast laser instruments (Picarro Inc). In the longer term, the network will allow the Air District to monitor ambient concentrations of GHGs and thus evaluate the effectiveness of its policy, regulation and enforcement efforts. We present data from the sites in their first few months of operation and

Fogwater chemistry in an urban atmosphere

OpenAIRE

Munger, J. William; Jacob, Daniel J.; Waldman, Jed M.; Hoffmann, Michael R.

1983-01-01

Analyses of fogwater collected by inertial impaction in the Los Angeles basin and the San Joaquin Valley indicated unusually high concentrations of major and minor ions. The dominant ions measured were NO_3^−, SO_4^(2−), NH_4^+, and H^+. Nitrate exceeded sulfate on an equivalent basis by a factor of 2.5 in the central and coastal regions of the Los Angeles basin but was approximately equal in the eastern Los Angeles basin and the San Joaquin Valley. Maximum observed values for NH_4^+, NO_3^−,...

Characterization of Reactants Reaction Mechanisms and Reaction Products Leading to Extreme Acid Rain and Acid Aerosol Conditions in Southern California

OpenAIRE

Hoffmann, Michael R.; Morgan, J. J.; Jacob, D. J.; Munger, J. W.; Waldman, J. M.

1983-01-01

Analyses of fogwater collected by inertial impaction in the Los Angeles basin and the San Joaquin Valley indicated unusually high concentrations of major and minor ions. The dominant ions measured were NO_3^-, SO_4^(2-), NH_4^+ and H^+ Nitrate exceeded sulfate on an equivalent basis by a factor of 2.5 in the central and coastal regions of the Los Angeles basin, but was approximately equal in the eastern Los Angeles basin and the San Joaquin Valley. Maximum observed values for NH_4^+, NO_3^- a...

Bayesian Nitrate Source Apportionment to Individual Groundwater Wells in the Central Valley by use of Nitrogen, Oxygen, and Boron Isotopic Tracers

Science.gov (United States)

Lockhart, K.; Harter, T.; Grote, M.; Young, M. B.; Eppich, G.; Deinhart, A.; Wimpenny, J.; Yin, Q. Z.

2014-12-01

Groundwater quality is a concern in alluvial aquifers underlying agricultural areas worldwide, an example of which is the San Joaquin Valley, California. Nitrate from land applied fertilizers or from animal waste can leach to groundwater and contaminate drinking water resources. Dairy manure and synthetic fertilizers are the major sources of nitrate in groundwater in the San Joaquin Valley, however, septic waste can be a major source in some areas. As in other such regions around the world, the rural population in the San Joaquin Valley relies almost exclusively on shallow domestic wells (≤150 m deep), of which many have been affected by nitrate. Consumption of water containing nitrate above the drinking water limit has been linked to major health effects including low blood oxygen in infants and certain cancers. Knowledge of the proportion of each of the three main nitrate sources (manure, synthetic fertilizer, and septic waste) contributing to individual well nitrate can aid future regulatory decisions. Nitrogen, oxygen, and boron isotopes can be used as tracers to differentiate between the three main nitrate sources. Mixing models quantify the proportional contributions of sources to a mixture by using the concentration of conservative tracers within each source as a source signature. Deterministic mixing models are common, but do not allow for variability in the tracer source concentration or overlap of tracer concentrations between sources. Bayesian statistics used in conjunction with mixing models can incorporate variability in the source signature. We developed a Bayesian mixing model on a pilot network of 32 private domestic wells in the San Joaquin Valley for which nitrate as well as nitrogen, oxygen, and boron isotopes were measured. Probability distributions for nitrogen, oxygen, and boron isotope source signatures for manure, fertilizer, and septic waste were compiled from the literature and from a previous groundwater monitoring project on several

Real-Time Water Quality Management in the Grassland Water District

Energy Technology Data Exchange (ETDEWEB)

Quinn, Nigel W.T.; Hanna, W. Mark; Hanlon, Jeremy S.; Burns, Josphine R.; Taylor, Christophe M.; Marciochi, Don; Lower, Scott; Woodruff, Veronica; Wright, Diane; Poole, Tim

2004-12-10

The purpose of the research project was to advance the concept of real-time water quality management in the San Joaquin Basin by developing an application to drainage of seasonal wetlands in the Grassland Water District. Real-time water quality management is defined as the coordination of reservoir releases, return flows and river diversions to improve water quality conditions in the San Joaquin River and ensure compliance with State water quality objectives. Real-time water quality management is achieved through information exchange and cooperation between shakeholders who contribute or withdraw flow and salt load to or from the San Joaquin River. This project complements a larger scale project that was undertaken by members of the Water Quality Subcommittee of the San Joaquin River Management Program (SJRMP) and which produced forecasts of flow, salt load and San Joaquin River assimilative capacity between 1999 and 2003. These forecasts can help those entities exporting salt load to the River to develop salt load targets as a mechanism for improving compliance with salinity objectives. The mass balance model developed by this project is the decision support tool that helps to establish these salt load targets. A second important outcome of this project was the development and application of a methodology for assessing potential impacts of real-time wetland salinity management. Drawdown schedules are typically tied to weather conditions and are optimized in traditional practices to maximize food sources for over-wintering wildfowl as well as providing a biological control (through germination temperature) of undesirable weeds that compete with the more proteinaceous moist soil plants such as swamp timothy, watergrass and smartweed. This methodology combines high resolution remote sensing, ground-truthing vegetation surveys using established survey protocols and soil salinity mapping using rapid, automated electromagnetic sensor technology. This survey methodology

Hydrogeologic Assessment of the East Bear Creek Unit, San LuisNational Wildlife Refuge

Energy Technology Data Exchange (ETDEWEB)

Quinn, Nigel W.T.

2007-07-15

San Luis National Wildlife Refuge Complex to meetReclamation s obligations for Level 4 water supply under the CentralValley Project Improvement Act. Hydrogeological assessment of the EastBear Creek Unit of the San Luis National Wildlife Refuge was conductedusing a combination of field investigations and a survey of availableliterature from past US Geological Survey Reports and reports by localgeological consultants. Conservative safe yield estimates made using theavailable data show that the East Bear Creek Unit may have sufficientgroundwater resources in the shallow groundwater aquifer to meet aboutbetween 25 percent and 52 percent of its current Level II and between 17percent and 35 percent of its level IV water supply needs. The rate ofsurface and lateral recharge to the Unit and the design of the well fieldand the layout and capacity of pumped wells will decide both thepercentage of annual needs that the shallow aquifer can supply andwhether this yield is sustainable without affecting long-term aquiferquality. In order to further investigate the merits of pumping the nearsurface aquifer, which appears to have reasonable water quality for usewithin the East Bear Creek Unit -- monitoring of the potential sources ofaquifer recharge and the installation of a pilot shallow well would bewarranted. Simple monitoring stations could be installed both upstreamand downstream of both the San Joaquin River and Bear Creek and beinstrumented to measureriver stage, flow and electrical conductivity.Ideally this would be done in conjunction with a shallow pilot well,pumped to supply a portion of the Unit's needs for the wetland inundationperiod.

Coastal processes study at Ocean Beach, San Francisco, CA: summary of data collection 2004-2006

Science.gov (United States)

Barnard, Patrick L.; Eshleman, Jodi; Erikson, Li H.; Hanes, Daniel M.

2007-01-01

Ocean Beach in San Francisco, California, contains a persistent erosional section in the shadow of the San Francisco ebb tidal delta and south of Sloat Boulevard that threatens valuable public infrastructure as well as the safe recreational use of the beach. Coastal managers have been discussing potential mediation measures for over a decade, with little scientific research available to aid in decision making. The United States Geological Survey (USGS) initiated the Ocean Beach Coastal Processes Study in April 2004 to provide the scientific knowledge necessary for coastal managers to make informed management decisions. This study integrates a wide range of field data collection and numerical modeling techniques to document nearshore sediment transport processes at the mouth of San Francisco Bay, with emphasis on how these processes relate to erosion at Ocean Beach. The Ocean Beach Coastal Processes Study is the first comprehensive study of coastal processes at the mouth of San Francisco Bay.

Spatial and temporal trends of contaminants in eggs of wading birds from San Francisco Bay, California

Science.gov (United States)

Hothem, R.L.; Roster, D.L.; King, K.A.; Keldsen, T.J.; Marois, Katherine C.; Wainwright, S.E.

1995-01-01

Between 1989 and 1991, reproduction by black-crowned night-herons (Nycticorax nycticorax) and snowy egrets (Egretta thula) was studied at sites in San Francisco Bay. Eggs were collected from these and other bay sites and from South Wilbur Flood Area, a reference site in California's San Joaquin Valley. Eggs were analyzed for inorganic trace elements, organochlorine pesticides, and polychlorinated biphenyls (PCBs). Results were compared among sites and years and with results of previous studies. There was some evidence of impaired reproduction, but concentrations of contaminants were generally lower than threshold levels for such effects. Egg hatchability was generally good, with predation being the factor that most limited reproductive success. Mean PCB concentrations were generally higher in eggs from the south end of San Francisco Bay than from the north, but the only temporal change, an increase, was observed at Alcatraz Island. There were spatial differences for p,p'-DDE in night-heron eggs in 1990, but the highest mean concentration of DDE was in night-heron eggs from South Wilbur in 1991. Temporal declines in maximum concentrations of DDE in eggs were observed in the bay, but means did not change significantly over time, At Bair Island in the southern end of the bay, mean concentrations of mercury decreased while selenium increased in night-heron eggs over time, but there were no clear bay-wide spatial or temporal trends for either element.

Effects of smectite on the oil-expulsion efficiency of the Kreyenhagen Shale, San Joaquin Basin, California, based on hydrous-pyrolysis experiments

Science.gov (United States)

Lewan, Michael D.; Dolan, Michael P.; Curtis, John B.

2014-01-01

The amount of oil that maturing source rocks expel is expressed as their expulsion efficiency, which is usually stated in milligrams of expelled oil per gram of original total organic carbon (TOCO). Oil-expulsion efficiency can be determined by heating thermally immature source rocks in the presence of liquid water (i.e., hydrous pyrolysis) at temperatures between 350°C and 365°C for 72 hr. This pyrolysis method generates oil that is compositionally similar to natural crude oil and expels it by processes operative in the subsurface. Consequently, hydrous pyrolysis provides a means to determine oil-expulsion efficiencies and the rock properties that influence them. Smectite in source rocks has previously been considered to promote oil generation and expulsion and is the focus of this hydrous-pyrolysis study involving a representative sample of smectite-rich source rock from the Eocene Kreyenhagen Shale in the San Joaquin Basin of California. Smectite is the major clay mineral (31 wt. %) in this thermally immature sample, which contains 9.4 wt. % total organic carbon (TOC) comprised of type II kerogen. Compared to other immature source rocks that lack smectite as their major clay mineral, the expulsion efficiency of the Kreyenhagen Shale was significantly lower. The expulsion efficiency of the Kreyenhagen whole rock was reduced 88% compared to that of its isolated kerogen. This significant reduction is attributed to bitumen impregnating the smectite interlayers in addition to the rock matrix. Within the interlayers, much of the bitumen is converted to pyrobitumen through crosslinking instead of oil through thermal cracking. As a result, smectite does not promote oil generation but inhibits it. Bitumen impregnation of the rock matrix and smectite interlayers results in the rock pore system changing from water wet to bitumen wet. This change prevents potassium ion (K+) transfer and dissolution and precipitation reactions needed for the conversion of smectite to

Sources of high-chloride water and managed aquifer recharge in an alluvial aquifer in California, USA

Science.gov (United States)

O'Leary, David R.; Izbicki, John A.; Metzger, Loren F.

2015-11-01

As a result of pumping in excess of recharge, water levels in alluvial aquifers within the Eastern San Joaquin Groundwater Subbasin, 130 km east of San Francisco (California, USA), declined below sea level in the early 1950s and have remained so to the present. Chloride concentrations in some wells increased during that time and exceeded the US Environmental Protection Agency's secondary maximum contaminant level of 250 mg/L, resulting in removal of some wells from service. Sources of high-chloride water include irrigation return in 16 % of sampled wells and water from delta sediments and deeper groundwater in 50 % of sampled wells. Chloride concentrations resulting from irrigation return commonly did not exceed 100 mg/L, although nitrate concentrations were as high as 25 mg/L as nitrogen. Chloride concentrations ranged from less than 100-2,050 mg/L in wells affected by water from delta sediments and deeper groundwater. Sequential electromagnetic logs show movement of high-chloride water from delta sediments to pumping wells through permeable interconnected aquifer layers. δD and δ18O data show most groundwater originated as recharge along the front of the Sierra Nevada, but tritium and carbon-14 data suggest recharge rates in this area are low and have decreased over recent geologic time. Managed aquifer recharge at two sites show differences in water-level responses to recharge and in the physical movement of recharged water with depth related to subsurface geology. Well-bore flow logs also show rapid movement of water from recharge sites through permeable interconnected aquifer layers to pumping wells.

Sources of high-chloride water and managed aquifer recharge in an alluvial aquifer in California, USA

Science.gov (United States)

O'Leary, David; Izbicki, John A.; Metzger, Loren F.

2015-01-01

As a result of pumping in excess of recharge, water levels in alluvial aquifers within the Eastern San Joaquin Groundwater Subbasin, 130 km east of San Francisco (California, USA), declined below sea level in the early 1950s and have remained so to the present. Chloride concentrations in some wells increased during that time and exceeded the US Environmental Protection Agency’s secondary maximum contaminant level of 250 mg/L, resulting in removal of some wells from service. Sources of high-chloride water include irrigation return in 16 % of sampled wells and water from delta sediments and deeper groundwater in 50 % of sampled wells. Chloride concentrations resulting from irrigation return commonly did not exceed 100 mg/L, although nitrate concentrations were as high as 25 mg/L as nitrogen. Chloride concentrations ranged from less than 100–2,050 mg/L in wells affected by water from delta sediments and deeper groundwater. Sequential electromagnetic logs show movement of high-chloride water from delta sediments to pumping wells through permeable interconnected aquifer layers. δD and δ18O data show most groundwater originated as recharge along the front of the Sierra Nevada, but tritium and carbon-14 data suggest recharge rates in this area are low and have decreased over recent geologic time. Managed aquifer recharge at two sites show differences in water-level responses to recharge and in the physical movement of recharged water with depth related to subsurface geology. Well-bore flow logs also show rapid movement of water from recharge sites through permeable interconnected aquifer layers to pumping wells.

7 CFR 1412.47 - Planting flexibility.

Science.gov (United States)

2010-01-01

..., Imperial, Kern, Kings, Madera, Merced, Riverside, Sacramento, San Benito, San Joaquin, Santa Clara..., Henrico, Henry, Highland, Isle of Wight, James City, King and Queen, King George, King William, Lancaster..., persimmon, persian melon, pimentos, pineapple, pistachios, plantain, plumcots, plums, pomegranates, potatoes...

Passive remote sensing of large-scale methane emissions from Oil Fields in California's San Joaquin Valley and validation by airborne in-situ measurements - Results from COMEX

Science.gov (United States)

Gerilowski, Konstantin; Krautwurst, Sven; Thompson, David R.; Thorpe, Andrew K.; Kolyer, Richard W.; Jonsson, Haflidi; Krings, Thomas; Frankenberg, Christian; Horstjann, Markus; Leifer, Ira; Eastwood, Michael; Green, Robert O.; Vigil, Sam; Fladeland, Matthew; Schüttemeyer, Dirk; Burrows, John P.; Bovensmann, Heinrich

2016-04-01

The CO2 and MEthane EXperiment (COMEX) was a NASA and ESA funded campaign in support of the HyspIRI and CarbonSat mission definition activities. As a part of this effort, seven flights were performed between June 3 and September 4, 2014 with the Methane Airborne MAPper (MAMAP) remote sensing instrument (operated by the University of Bremen in cooperation with the German Research Centre for Geosciences - GFZ) over the Kern River, Kern Front, and Poso Creek Oil Fields located in California's San Joaquin Valley. MAMAP was installed for the flights aboard the Center for Interdisciplinary Remotely-Piloted Aircraft Studies (CIRPAS) Twin Otter aircraft, together with: a Picarro fast in-situ greenhouse gas (GHG) analyzer operated by the NASA Ames Research Center, ARC; a 5-hole turbulence probe; and an atmospheric measurement package operated by CIRPAS measuring aerosols, temperature, dew-point, and other atmospheric parameters. Three of the flights were accompanied by the Next Generation Airborne Visual InfraRed Imaging Spectrometer (AVIRIS-NG), operated by the Jet Propulsion Laboratory (JPL), California Institute of Technology, installed aboard a second Twin Otter aircraft. Large-scale, high-concentration CH4 plumes were detected by the MAMAP instrument over the fields and tracked over several kilometers. The spatial distribution of the MAMAP observed plumes was compared to high spatial resolution CH4 anomaly maps derived by AVIRIS-NG imaging spectroscopy data. Remote sensing data collected by MAMAP was used to infer CH4 emission rates and their distributions over the three fields. Aggregated emission estimates for the three fields were compared to aggregated emissions inferred by subsequent airborne in-situ validation measurements collected by the Picarro instrument. Comparison of remote sensing and in-situ flux estimates will be presented, demonstrating the ability of airborne remote sensing data to provide accurate emission estimates for concentrations above the

Evaluación del impacto socioeconómico de la Reserva de la Biosfera Alto Golfo de California y Delta del Río Colorado en la actividad pesquera ribereña de San Felipe, Baja California, México

Directory of Open Access Journals (Sweden)

Carlos Israel Vázquez León

2010-01-01

Full Text Available Desde 1993 las comunidades de Puerto Peñasco y Golfo de Santa Clara, Sonora, y San Felipe, Baja California, en México, están vinculadas por la Reserva de la Biosfera Alto Golfo de California y Delta del Río Colorado; creada para proteger varias especies endémicas, entre ellas al mamífero conocido como vaquita marina (Phocoenasinus y la totoaba (Totoaba macdonaldii.Aquí se analiza el efecto socioeconómico que en la pesca de San Felipe tuvo en 1994 y 2002 la creación de la reserva; concebida como un arreglo institucional de regulación pesquera, centrada en la protección ambiental y ecológica. La conclusión general es que deben incorporarse consideraciones socioeconómicas en el diseño de indicadores de eficiencia y evaluación para el éxito de la reserva territorial.

DELTAS: A new Global Delta Sustainability Initiative (Invited)

Science.gov (United States)

Foufoula-Georgiou, E.

2013-12-01

Deltas are economic and environmental hotspots, food baskets for many nations, home to a large part of the world population, and hosts of exceptional biodiversity and rich ecosystems. Deltas, being at the land-water interface, are international, regional, and local transport hubs, thus providing the basis for intense economic activities. Yet, deltas are deteriorating at an alarming rate as 'victims' of human actions (e.g. water and sediment reduction due to upstream basin development), climatic impacts (e.g. sea level rise and flooding from rivers and intense tropical storms), and local exploration (e.g. sand or aggregates, groundwater and hydrocarbon extraction). Although many efforts exist on individual deltas around the world, a comprehensive global delta sustainability initiative that promotes awareness, science integration, data and knowledge sharing, and development of decision support tools for an effective dialogue between scientists, managers and policy makers is lacking. Recently, the international scientific community proposed to establish the International Year of Deltas (IYD) to serve as the beginning of such a Global Delta Sustainability Initiative. The IYD was proposed as a year to: (1) increase awareness and attention to the value and vulnerability of deltas worldwide; (2) promote and enhance international and regional cooperation at the scientific, policy, and stakeholder level; and (3) serve as a launching pad for a 10-year committed effort to understand deltas as complex socio-ecological systems and ensure preparedness in protecting and restoring them in a rapidly changing environment. In this talk, the vision for such an international coordinated effort on delta sustainability will be presented as developed by a large number of international experts and recently funded through the Belmont Forum International Opportunities Fund. Participating countries include: U.S., France, Germany, U.K., India, Japan, Netherlands, Norway, Brazil, Bangladesh

Effects of the proposed California WaterFix North Delta Diversion on flow reversals and entrainment of juvenile Chinook salmon (Oncorhynchus tshawytscha) into Georgiana Slough and the Delta Cross Channel, northern California

Science.gov (United States)

Perry, Russell W.; Romine, Jason G.; Pope, Adam C.; Evans, Scott D.

2018-02-27

The California Department of Water Resources and Bureau of Reclamation propose new water intake facilities on the Sacramento River in northern California that would convey some of the water for export to areas south of the Sacramento-San Joaquin River Delta (hereinafter referred to as the Delta) through tunnels rather than through the Delta. The collection of water intakes, tunnels, pumping facilities, associated structures, and proposed operations are collectively referred to as California WaterFix. The water intake facilities, hereinafter referred to as the North Delta Diversion (NDD), are proposed to be located on the Sacramento River downstream of the city of Sacramento and upstream of the first major river junction where Sutter Slough branches from the Sacramento River. The NDD can divert a maximum discharge of 9,000 cubic feet per second (ft3/s) from the Sacramento River, which reduces the amount of Sacramento River inflow into the Delta.In this report, we conducted three analyses to investigate the effect of the NDD and its proposed operation on entrainment of juvenile Chinook salmon (Oncorhynchus tshawytscha) into Georgiana Slough and the Delta Cross Channel (DCC). Fish that enter the interior Delta (the network of channels to the south of the Sacramento River) through Georgiana Slough and the DCC survive at lower rates than fish that use other migration routes (Sacramento River, Sutter Slough, and Steamboat Slough). Therefore, fisheries managers were concerned about the extent to which operation of the NDD would increase the proportion of the population entering the interior Delta, which, all else being equal, would lower overall survival through the Delta by increasing the fraction of the population subject to lower survival rates. Operation of the NDD would reduce flow in the Sacramento River, which has the potential to increase the magnitude and duration of reverse flows of the Sacramento River downstream of Georgiana Slough.In the first analysis, we

Assessments at multiple levels of biological organization allow for an integrative determination of physiological tolerances to turbidity in an endangered fish species.

Science.gov (United States)

Hasenbein, Matthias; Fangue, Nann A; Geist, Juergen; Komoroske, Lisa M; Truong, Jennifer; McPherson, Rina; Connon, Richard E

2016-01-01

Turbidity can influence trophic levels by altering species composition and can potentially affect fish feeding strategies and predator-prey interactions. The estuarine turbidity maximum, described as an area of increased suspended particles, phytoplankton and zooplankton, generally represents a zone with higher turbidity and enhanced food sources important for successful feeding and growth in many fish species. The delta smelt (Hypomesus transpacificus) is an endangered, pelagic fish species endemic to the San Francisco Estuary and Sacramento-San Joaquin River Delta, USA, where it is associated with turbid waters. Turbidity is known to play an important role for the completion of the species' life cycle; however, turbidity ranges in the Delta are broad, and specific requirements for this fish species are still unknown. To evaluate turbidity requirements for early life stages, late-larval delta smelt were maintained at environmentally relevant turbidity levels ranging from 5 to 250 nephelometric turbidity units (NTU) for 24 h, after which a combination of physiological endpoints (molecular biomarkers and cortisol), behavioural indices (feeding) and whole-organism measures (survival) were determined. All endpoints delivered consistent results and identified turbidities between 25 and 80 NTU as preferential. Delta smelt survival rates were highest between 12 and 80 NTU and feeding rates were highest between 25 and 80 NTU. Cortisol levels indicated minimal stress between 35 and 80 NTU and were elevated at low turbidities (5, 12 and 25 NTU). Expression of stress-related genes indicated significant responses for gst, hsp70 and glut2 in high turbidities (250 NTU), and principal component analysis on all measured genes revealed a clustering of 25, 35, 50 and 80 NTU separating the medium-turbidity treatments from low- and high-turbidity treatments. Taken together, these data demonstrate that turbidity levels that are either too low or too high affect delta

Environmental Assessment: Target Upgrades on Leach Lake Tactical Range at the National Training Center, Fort Irwin, California

Science.gov (United States)

2006-06-01

base of the San Bernardino Moun- tains; in the southern San Joaquin Valley; and discontinuously in southern Nevada. Populations recorded in the...and migratory bird species. Approximately 120 species of birds pass through the study area during migration. Costa’s hummingbirds (Calypte costae

Understanding processes controlling sediment transports at the mouth of a highly energetic inlet system (San Francisco Bay, CA)

Science.gov (United States)

Elias, Edwin P.L.; Hansen, Jeff E.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

San Francisco Bay is one of the largest estuaries along the U.S. West Coast and is linked to the Pacific Ocean through the Golden Gate, a 100 m deep bedrock inlet. A coupled wave, flow and sediment transport model is used to quantify the sediment linkages between San Francisco Bay, the Golden Gate, and the adjacent open coast. Flow and sediment transport processes are investigated using an ensemble average of 24 climatologically derived wave cases and a 24.8 h representative tidal cycle. The model simulations show that within the inlet, flow and sediment transport is tidally dominated and driven by asymmetry of the ebb and flood tides. Peak ebb velocities exceed the peak flood velocities in the narrow Golden Gate channel as a result of flow convergence and acceleration. Persistent flow and sediment gyres at the headland tips are formed that limit sediment transfer from the ebb-tidal delta to the inlet and into the bay. The residual transport pattern in the inlet is dominated by a lateral segregation with a large ebb-dominant sediment transport (and flow) prevailing along the deeper north side of the Golden Gate channel, and smaller flood dominant transports along the shallow southern margin. The seaward edge of the ebb-tidal delta largely corresponds to the seaward extent of strong tidal flows. On the ebb-tidal delta, both waves and tidal forcing govern flow and sediment transport. Wave focusing by the ebb-tidal delta leads to strong patterns of sediment convergence and divergence along the adjacent Ocean Beach.

Literature Review of Unconsolidated Sediment in San Francisco Bay and Nearby Pacific Ocean Coast

Directory of Open Access Journals (Sweden)

Barry R. Keller

2009-09-01

Full Text Available A review of the geologic literature regarding sedimentation in the San Francisco Bay estuarine system shows that the main part of the bay occupies a structural tectonic depression that developed in Pleistocene time. Eastern parts, including San Pablo Bay and Suisun Bay, have had sedimentation throughout late Mesozoic and Tertiary. Carquinez Strait and the Golden Gate may represent antecedent stream erosion. Sedimentation has included estuarine, alluvial, and eolian deposition. The ages of estuarine deposition includes the modern high sea level stand and earlier Pleistocene interglacial periods. Sediment sources can be generally divided into the Coast Ranges, particularly the Franciscan Complex, and “Sierran.” Much of the estuarine system is floored by very fine sediment, with local areas of sand floor. Near the Golden Gate, sediment size decreases in both directions away from the deep channel. Bedforms include sand waves (submarine dunes, flat beds, and rock and boulders. These are interpreted in terms of dominant transport directions. Near the Golden Gate is an ebb-tidal delta on the outside (including San Francisco bar and a flood-tidal delta on the inside (parts of Central Bay. The large tidal prism causes strong tidal currents, which in the upper part of the estuary are normally much stronger than river currents, except during large floods. Cultural influences have altered conditions, including hydraulic mining debris, blasting of rocks, dredging of navigation channels, filling of the bay, and commercial sand mining. Many of these have served to decrease the tidal prism, correspondingly decreasing the strength of tidal currents.

Ground-Water Quality Data in the Southeast San Joaquin Valley, 2005-2006 - Results from the California GAMA Program

Science.gov (United States)

Burton, Carmen A.; Belitz, Kenneth

2008-01-01

Ground-water quality in the approximately 3,800 square-mile Southeast San Joaquin Valley study unit (SESJ) was investigated from October 2005 through February 2006 as part of the Priority Basin Assessment Project of Ground-Water Ambient Monitoring and Assessment (GAMA) Program. The GAMA Statewide Basin Assessment project was developed in response to the Ground-Water Quality Monitoring Act of 2001 and is being conducted by the California State Water Resources Control Board (SWRCB) in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory (LLNL). The SESJ study was designed to provide a spatially unbiased assessment of raw ground-water quality within SESJ, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 99 wells in Fresno, Tulare, and Kings Counties, 83 of which were selected using a spatially distributed, randomized grid-based method to provide statistical representation of the study area (grid wells), and 16 of which were sampled to evaluate changes in water chemistry along ground-water flow paths or across alluvial fans (understanding wells). The ground-water samples were analyzed for a large number of synthetic organic constituents (volatile organic compounds [VOCs], pesticides and pesticide degradates, and pharmaceutical compounds), constituents of special interest (perchlorate, N-nitrosodimethylamine, and 1,2,3-trichloropropane), naturally occurring inorganic constituents (nutrients, major and minor ions, and trace elements), radioactive constituents, and microbial indicators. Naturally occurring isotopes (tritium, and carbon-14, and stable isotopes of hydrogen, oxygen, nitrogen, and carbon), and dissolved noble gases also were measured to help identify the source and age of the sampled ground water. Quality-control samples (blanks, replicates, samples for matrix spikes) were collected at approximately 10 percent of the wells, and the results

Installation Development Environmental Assessment Travis Air Force Base, California

Science.gov (United States)

2007-11-01

species are: Name Status Lasthenia conjungens Federally listed as endangered Contra Costa Goldfields Gratiola heterosepala State-listed as...Contra Costa , Main, Napa, San Francisco, San Mateo, Santa Clara, and Sonoma counties. The portion of the county which includes Travis AFB is designated...kilometers) north to south, its northern half referred to as the Sacramento Valley and its southern half as the San Joaquin Valley. This area is

EDXRF Analysis of pigments of the Joaquin Sorolla Artistic Paintings

International Nuclear Information System (INIS)

Ferrero, Jose L.; Roldan Clodoaldo, David; Mario Alvarez, Juanes

1999-01-01

The study of the pictorial work of Joaquin Sorolla has not been carried out from the point of view of the scientific analysis. Analytical techniques give us objective information about materials and process used in artistic works of art. In this sense, the Archaeometry Unit of the Institute of Material Science of the Valencia University (ICMUV), has carried out the first analysis of pigments of the paintings of Sorolla by Energy Dispersive X-Ray Fluorescence(EDXRF)

Feasibility Study and Environmental Impact Statement, Oakland Inner Harbor, California, Deep-Draft Navigation.

Science.gov (United States)

1983-06-01

water habitat type exists at this location as this area is a corridor for anadromous species migrating to ind from the Sacramento-San Joaquin estuary...the Concord 15-minute, Quadrangle and the Oakland West, Richmond, and part of the San Quentin 7-1/2 rinute Quadrangles, Contra Costa and Alameda

How can climate change and engineered water conveyance affect sediment dynamics in the San Francisco Bay-Delta system?

Science.gov (United States)

Achete, Fernanda; Van der Wegen, Mick; Roelvink, Jan Adriaan; Jaffe, Bruce E.

2017-01-01

Suspended sediment concentration is an important estuarine health indicator. Estuarine ecosystems rely on the maintenance of habitat conditions, which are changing due to direct human impact and climate change. This study aims to evaluate the impact of climate change relative to engineering measures on estuarine fine sediment dynamics and sediment budgets. We use the highly engineered San Francisco Bay-Delta system as a case study. We apply a process-based modeling approach (Delft3D-FM) to assess the changes in hydrodynamics and sediment dynamics resulting from climate change and engineering scenarios. The scenarios consider a direct human impact (shift in water pumping location), climate change (sea level rise and suspended sediment concentration decrease), and abrupt disasters (island flooding, possibly as the results of an earthquake). Levee failure has the largest impact on the hydrodynamics of the system. Reduction in sediment input from the watershed has the greatest impact on turbidity levels, which are key to primary production and define habitat conditions for endemic species. Sea level rise leads to more sediment suspension and a net sediment export if little room for accommodation is left in the system due to continuous engineering works. Mitigation measures like levee reinforcement are effective for addressing direct human impacts, but less effective for a persistent, widespread, and increasing threat like sea level rise. Progressive adaptive mitigation measures to the changes in sediment and flow dynamics resulting from sea level rise may be a more effective strategy. Our approach shows that a validated process-based model is a useful tool to address long-term (decades to centuries) changes in sediment dynamics in highly engineered estuarine systems. In addition, our modeling approach provides a useful basis for long-term, process-based studies addressing ecosystem dynamics and health.

75 FR 39143 - Airworthiness Directives; Arrow Falcon Exporters, Inc. (previously Utah State University); AST...

Science.gov (United States)

2010-07-08

... (previously Precision Helicopters, LLC); Robinson Air Crane, Inc.; San Joaquin Helicopters (previously Hawkins... (Previously Hawkins & Powers Aviation); S.M. &T. Aircraft (Previously Us Helicopter Inc., UNC Helicopters, Inc...

75 FR 66123 - Endangered Species Recovery Permit Applications

Science.gov (United States)

2010-10-27

... enhancing their survival. Permit No. TE-24582A Applicant: Russell C. Croel, Folsom, California. The..., Contra Costa, Fresno, Glenn, Kings, Merced, Placer, Sacramento, San Joaquin, Shasta, Solano, Stanislaus...

San Andreas Fault in the Carrizo Plain

Science.gov (United States)

2000-01-01

The 1,200-kilometer (800-mile)San Andreas is the longest fault in California and one of the longest in North America. This perspective view of a portion of the fault was generated using data from the Shuttle Radar Topography Mission (SRTM), which flew on NASA's Space Shuttle last February, and an enhanced, true-color Landsat satellite image. The view shown looks southeast along the San Andreas where it cuts along the base of the mountains in the Temblor Range near Bakersfield. The fault is the distinctively linear feature to the right of the mountains. To the left of the range is a portion of the agriculturally rich San Joaquin Valley. In the background is the snow-capped peak of Mt. Pinos at an elevation of 2,692 meters (8,831 feet). The complex topography in the area is some of the most spectacular along the course of the fault. To the right of the fault is the famous Carrizo Plain. Dry conditions on the plain have helped preserve the surface trace of the fault, which is scrutinized by both amateur and professional geologists. In 1857, one of the largest earthquakes ever recorded in the United States occurred just north of the Carrizo Plain. With an estimated magnitude of 8.0, the quake severely shook buildings in Los Angeles, caused significant surface rupture along a 350-kilometer (220-mile) segment of the fault, and was felt as far away as Las Vegas, Nev. This portion of the San Andreas is an important area of study for seismologists. For visualization purposes, topographic heights displayed in this image are exaggerated two times.The elevation data used in this image was acquired by SRTM aboard the Space Shuttle Endeavour, launched on February 11, 2000. SRTM used the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on Endeavour in 1994. SRTM was designed to collect three-dimensional measurements of Earth's land surface. To collect the 3-D SRTM data, engineers added a mast 60

Suspended-sediment flux and retention in a backwater tidal slough complex near the landward boundary of an estuary

Science.gov (United States)

Morgan-King, Tara L.; Schoellhamer, David H.

2013-01-01

Backwater tidal sloughs are commonly found at the landward boundary of estuaries. The Cache Slough complex is a backwater tidal region within the Upper Sacramento–San Joaquin Delta that includes two features that are relevant for resource managers: (1) relatively high abundance of the endangered fish, delta smelt (Hypomesus transpacificus), which prefers turbid water and (2) a recently flooded shallow island, Liberty Island, that is a prototype for habitat restoration. We characterized the turbidity around Liberty Island by measuring suspended-sediment flux at four locations from July 2008 through December 2010. An estuarine turbidity maximum in the backwater Cache Slough complex is created by tidal asymmetry, a limited tidal excursion, and wind-wave resuspension. During the study, there was a net export of sediment, though sediment accumulates within the region from landward tidal transport during the dry season. Sediment is continually resuspended by both wind waves and flood tide currents. The suspended-sediment mass oscillates within the region until winter freshwater flow pulses flush it seaward. The hydrodynamic characteristics within the backwater region such as low freshwater flow during the dry season, flood tide dominance, and a limited tidal excursion favor sediment retention.

Influence of different organic fertilizers on quality parameters and the delta(15)N, delta(13)C, delta(2)H, delta(34)S, and delta(18)O values of orange fruit (Citrus sinensis L. Osbeck).

Science.gov (United States)

Rapisarda, Paolo; Camin, Federica; Fabroni, Simona; Perini, Matteo; Torrisi, Biagio; Intrigliolo, Francesco

2010-03-24

To investigate the influence of different types of fertilizers on quality parameters, N-containing compounds, and the delta(15)N, delta(13)C, delta(2)H, delta (34)S, and delta(18)O values of citrus fruit, a study was performed on the orange fruit cv. 'Valencia late' (Citrus sinensis L. Osbeck), which was harvested in four plots (three organic and one conventional) located on the same farm. The results demonstrated that different types of organic fertilizers containing the same amount of nitrogen did not effect important changes in orange fruit quality parameters. The levels of total N and N-containing compounds such as synephrine in fruit juice were not statistically different among the different treatments. The delta(15)N values of orange fruit grown under fertilizer derived from animal origin as well as from vegetable compost were statistically higher than those grown with mineral fertilizer. Therefore, delta(15)N values can be used as an indicator of citrus fertilization management (organic or conventional), because even when applied organic fertilizers are of different origins, the natural abundance of (15)N in organic citrus fruit remains higher than in conventional ones. These treatments also did not effect differences in the delta(13)C, delta(2)H, delta(34)S, and delta(18)O values of fruit.

Challenges, Approaches and Experiences from Asian Deltas and the Rhine-Meuse Delta : Regional Training Workshop on Delta Planning and Management

NARCIS (Netherlands)

Wosten, J.H.M.; Douven, W.; Long Phi, H.; Fida Abdullah Khan, M.

2013-01-01

River delta's, like the Mekong Delta (Vietnam), Ganges-Brahmaputra Delta (Bangladesh), Ayeyarwady Delta (Myanmar), Nile (Egypt) and Ciliwung Delta (Indonesia) are developing rapidly and are characterised by large-scale urbanisation and industrialization processes. They are facing serious planning

San Francisco folio, California, Tamalpais, San Francisco, Concord, San Mateo, and Haywards quadrangles

Science.gov (United States)

Lawson, Andrew Cowper

1914-01-01

The five sheets of the San Francisco folio the Tamalpais, Ban Francisco, Concord, Ban Mateo, and Haywards sheets map a territory lying between latitude 37° 30' and 38° and longitude 122° and 122° 45'. Large parts of four of these sheets cover the waters of the Bay of San Francisco or of the adjacent Pacific Ocean. (See fig. 1.) Within the area mapped are the cities of San Francisco, Oakland, Berkeley, Alameda, Ban Rafael, and San Mateo, and many smaller towns and villages. These cities, which have a population aggregating about 750,000, together form the largest and most important center of commercial and industrial activity on the west coast of the United States. The natural advantages afforded by a great harbor, where the railways from the east meet the ships from all ports of the world, have determined the site of a flourishing cosmopolitan, commercial city on the shores of San Francisco Bay. The bay is encircled by hilly and mountainous country diversified by fertile valley lands and divides the territory mapped into two rather contrasted parts, the western part being again divided by the Golden Gate. It will therefore be convenient to sketch the geographic features under four headings (1) the area east of San Francisco Bay; (2) the San Francisco Peninsula; (3) the Marin Peninsula; (4) San Francisco Bay. (See fig. 2.)

Groundwater quality in the Western San Joaquin Valley study unit, 2010: California GAMA Priority Basin Project

Science.gov (United States)

Fram, Miranda S.

2017-06-09

Water quality in groundwater resources used for public drinking-water supply in the Western San Joaquin Valley (WSJV) was investigated by the USGS in cooperation with the California State Water Resources Control Board (SWRCB) as part of its Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project. The WSJV includes two study areas: the Delta–Mendota and Westside subbasins of the San Joaquin Valley groundwater basin. Study objectives for the WSJV study unit included two assessment types: (1) a status assessment yielding quantitative estimates of the current (2010) status of groundwater quality in the groundwater resources used for public drinking water, and (2) an evaluation of natural and anthropogenic factors that could be affecting the groundwater quality. The assessments characterized the quality of untreated groundwater, not the quality of treated drinking water delivered to consumers by water distributors.The status assessment was based on data collected from 43 wells sampled by the U.S. Geological Survey for the GAMA Priority Basin Project (USGS-GAMA) in 2010 and data compiled in the SWRCB Division of Drinking Water (SWRCB-DDW) database for 74 additional public-supply wells sampled for regulatory compliance purposes between 2007 and 2010. To provide context, concentrations of constituents measured in groundwater were compared to U.S. Environmental Protection Agency (EPA) and SWRCB-DDW regulatory and non-regulatory benchmarks for drinking-water quality. The status assessment used a spatially weighted, grid-based method to estimate the proportion of the groundwater resources used for public drinking water that has concentrations for particular constituents or class of constituents approaching or above benchmark concentrations. This method provides statistically unbiased results at the study-area scale within the WSJV study unit, and permits comparison of the two study areas to other areas assessed by the GAMA Priority Basin Project

Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Southwest). Chinook Salmon.

Science.gov (United States)

1986-04-01

fin is moderately forked; America are distributed from the adipose is stout and prominent; a Sacramento-San Joaquin River system free- tipoed flesh...downstream. Joaquin Rivers to spawn in 1953-83 The completed nest forms an oval de - (data from Taylor 1974; Reavis 1983; pression with a mound of gravel...warmwater fish produc- of engineering requirements and bio- tion and costs . Calif. Dep. Fish logical criteria. U.S. Army Corps Game, Inland Fish

Delta Plaza kohvik = Delta Plaza cafe

Index Scriptorium Estoniae

2010-01-01

Tallinnas Pärnu mnt 141 asuva kohviku Delta Plaza sisekujundusest. Sisearhitektid Tiiu Truus ja Marja Viltrop (Stuudio Truus OÜ). Tiiu Truusi tähtsamate tööde loetelu. Büroohoone Delta Plaza arhitektid Marika Lõoke ja Jüri Okas (AB J. Okas & M. Lõoke)

7 CFR 917.14 - District.

Science.gov (United States)

2010-01-01

... District. (g) Contra Costa District includes and consists of Contra Costa County. (h) Santa Clara District... Ventura County. (l) Stockton District includes and consists of San Joaquin County, Amador County...

Growth laws for sub-delta crevasses in the Mississippi River Delta

Science.gov (United States)

Yocum, T. A.; Georgiou, I. Y.; Straub, K. M.

2017-12-01

River deltas are threatened by environmental change, including subsidence, global sea level rise, reduced sediment inputs and other local factors. In the Mississippi River Delta (MRD) these impacts are exemplified, and have led to proposed solutions to build land that include sediment diversions to reinitiate the delta cycle. Deltas were studied extensively using numerical models, theoretical and conceptual frameworks, empirical scaling relationships, laboratory models and field observations. But predicting the future of deltas relies on field observations where for most deltas data are still lacking. Moreover, empirical and theoretical scaling laws may be influenced by the data used to develop them, while laboratory deltas may be influenced by scaling issues. Anthropogenic crevasses in the MRD are large enough to overcome limitations of laboratory deltas, and small enough to allow for rapid channel and wetland development, providing an ideal setting to investigate delta development mechanics. Here we assessed growth laws of sub-delta crevasses (SDC) in the MRD, in two experimental laboratory deltas (LD - weakly and strongly cohesive) and compared them to river dominated deltas worldwide. Channel and delta geometry metrics for each system were obtained using geospatial tools, bathymetric datasets, sediment size, and hydrodynamic observations. Results show that SDC follow growth laws similar to large river dominated deltas, with the exception of some that exhibit anomalous behavior with respect to the frequency and distance to a bifurcation and the fraction of wetted delta shoreline (allometry metrics). Most SDC exhibit a systematic decrease of non-dimensional channel geometries with increased bifurcation order, indicating that channels are adjusting to decreased flow after bifurcations occur, and exhibit linear trends for land allometry and width-depth ratio, although geometries decrease more rapidly per bifurcation order. Measured distance to bifurcations in SDC

Does centennial morphodynamic evolution lead to higher channel efficiency in San Pablo Bay, California?

Science.gov (United States)

van der Wegen, M.; Jaffe, B.E.; Barnard, P.L.; Jaffee, B.E.; Schoellhamer, D.H.

2013-01-01

Measured bathymetries on 30 year interval over the past 150 years show that San Pablo Bay experienced periods of considerable deposition followed by periods of net erosion. However, the main channel in San Pablo Bay has continuously narrowed. The underlying mechanisms and consequences of this tidal channel evolution are not well understood. The central question of this study is whether tidal channels evolve towards a geometry that leads to more efficient hydraulic conveyance and sediment throughput. We applied a hydrodynamic process-based, numerical model (Delft3D), which was run on 5 San Pablo Bay bathymetries measured between 1856 and 1983. Model results shows increasing energy dissipation levels for lower water flows leading to an approximately 15% lower efficiency in 1983 compared to 1856. During the same period the relative seaward sediment throughput through the San Pablo Bay main channel increased by 10%. A probable explanation is that San Pablo Bay is still affected by the excessive historic sediment supply. Sea level rise and Delta surface water area variations over 150 years have limited effect on the model results. With expected lower sediment concentrations in the watershed and less impact of wind waves due to erosion of the shallow flats, it is possible that energy dissipations levels will decrease again in future decades. Our study suggests that the morphodynamic adaptation time scale to excessive variations in sediment supply to estuaries may be on the order of centuries.

Deformation characteristics of {delta} phase in the delta-processed Inconel 718 alloy

Energy Technology Data Exchange (ETDEWEB)

Zhang, H.Y., E-mail: haiyanzhang@imr.ac.cn [Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016 (China); Zhang, S.H., E-mail: shzhang@imr.ac.cn [Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016 (China); Cheng, M. [Institute of Metal Research, Chinese Academy of Sciences, Shenyang 110016 (China); Li, Z.X. [Beijing Institute of Aeronautica1 Materials, Beijing 100095 (China)

2010-01-15

The hot working characteristics of {delta} phase in the delta-processed Inconel 718 alloy during isothermal compression deformation at temperature of 950 deg. C and strain rate of 0.005 s{sup -1}, were studied by using optical microscope, scanning electron microscope and quantitative X-ray diffraction technique. The results showed that the dissolution of plate-like {delta} phase and the precipitation of spherical {delta} phase particles coexisted during the deformation, and the content of {delta} phase decreased from 7.05 wt.% to 5.14 wt.%. As a result of deformation breakage and dissolution breakage, the plate-like {delta} phase was spheroidized and transferred to spherical {delta} phase particles. In the center with largest strain, the plate-like {delta} phase disappeared and spherical {delta} phase appeared in the interior of grains and grain boundaries.

Climate Change, Public Health, and Policy: A California Case Study.

Science.gov (United States)

Ganesh, Chandrakala; Smith, Jason A

2018-04-01

Anthropogenic activity will bring immediate changes and disruptions to the global climate with accompanying health implications. Although policymakers and public health advocates are beginning to acknowledge the health implications of climate change, current policy approaches are lagging behind. We proposed that 4 key policy principles are critical to successful policymaking in this arena: mainstreaming, linking mitigation and adaptation policy, applying population perspectives, and coordination. We explored California's progress in addressing the public health challenges of climate change in the San Joaquin Valley as an example. We discussed issues of mental health and climate change, and used the San Joaquin Valley of California as an example to explore policy approaches to health issues and climate change. The California experience is instructive for other jurisdictions.

Climate Change, Public Health, and Policy: A California Case Study

Science.gov (United States)

Smith, Jason A.

2018-01-01

Anthropogenic activity will bring immediate changes and disruptions to the global climate with accompanying health implications. Although policymakers and public health advocates are beginning to acknowledge the health implications of climate change, current policy approaches are lagging behind. We proposed that 4 key policy principles are critical to successful policymaking in this arena: mainstreaming, linking mitigation and adaptation policy, applying population perspectives, and coordination. We explored California’s progress in addressing the public health challenges of climate change in the San Joaquin Valley as an example. We discussed issues of mental health and climate change, and used the San Joaquin Valley of California as an example to explore policy approaches to health issues and climate change. The California experience is instructive for other jurisdictions. PMID:29072936

Napa Earthquake impact on water systems

Science.gov (United States)

Wang, J.

2014-12-01

South Napa earthquake occurred in Napa, California on August 24 at 3am, local time, and the magnitude is 6.0. The earthquake was the largest in SF Bay Area since the 1989 Loma Prieta earthquake. Economic loss topped $ 1 billion. Wine makers cleaning up and estimated the damage on tourism. Around 15,000 cases of lovely cabernet were pouring into the garden at the Hess Collection. Earthquake potentially raise water pollution risks, could cause water crisis. CA suffered water shortage recent years, and it could be helpful on how to prevent underground/surface water pollution from earthquake. This research gives a clear view on drinking water system in CA, pollution on river systems, as well as estimation on earthquake impact on water supply. The Sacramento-San Joaquin River delta (close to Napa), is the center of the state's water distribution system, delivering fresh water to more than 25 million residents and 3 million acres of farmland. Delta water conveyed through a network of levees is crucial to Southern California. The drought has significantly curtailed water export, and salt water intrusion reduced fresh water outflows. Strong shaking from a nearby earthquake can cause saturated, loose, sandy soils liquefaction, and could potentially damage major delta levee systems near Napa. Napa earthquake is a wake-up call for Southern California. It could potentially damage freshwater supply system.

Delta antibody radioimmunoassay

Energy Technology Data Exchange (ETDEWEB)

Kselikova, M; Urbankova, J

1985-11-15

The principle and procedure are described of the radioimmunoassay of delta antibody (delta-Ab) using the ABBOTT ANTI-DELTA kit by Abbott Co. A description is given of the kit, the working procedure and the method of evaluation. The results are reported of the incidence of delta-Ab in sera of patients with viral hepatitis B, in haemophiliacs, carriers of the hepatitis B virus surface antigen (HBsAg) and blood donors. The presence was detected of delta-Ab in one HBsAg carrier. The necessity is emphasized of delta-Ab determinations in the blood of donors in view of the antibody transfer with blood and blood preparations.

A novel mouse PKC{delta} splice variant, PKC{delta}IX, inhibits etoposide-induced apoptosis

Energy Technology Data Exchange (ETDEWEB)

Kim, Jung D. [School of Biological Sciences, University of Ulsan, Ulsan (Korea, Republic of); Seo, Kwang W. [Department of Internal Medicines, Ulsan University Hospital and School of Medicine, University of Ulsan, Ulsan (Korea, Republic of); Lee, Eun A.; Quang, Nguyen N. [School of Biological Sciences, University of Ulsan, Ulsan (Korea, Republic of); Cho, Hong R. [Department of Surgery, Ulsan University Hospital and School of Medicine, University of Ulsan, Ulsan (Korea, Republic of); Biomedical Research Center, Ulsan University Hospital and School of Medicine, University of Ulsan, Ulsan (Korea, Republic of); Kwon, Byungsuk, E-mail: bskwon@mail.ulsan.as.kr [School of Biological Sciences, University of Ulsan, Ulsan (Korea, Republic of); Biomedical Research Center, Ulsan University Hospital and School of Medicine, University of Ulsan, Ulsan (Korea, Republic of)

2011-07-01

Highlights: {yields} A novel PKC{delta} isoform, named PKC{delta}IX, that lacks the C1 domain and the ATP-binding site is ubiquitously expressed. {yields} PKC{delta}IX inhibits etoposide-induced apoptosis. {yields} PKC{delta}IX may function as an endogenous dominant negative isoform for PKC{delta}. -- Abstract: Protein kinase C (PKC) {delta} plays an important role in cellular proliferation and apoptosis. The catalytic fragment of PKC{delta} generated by caspase-dependent cleavage is essential for the initiation of etoposide-induced apoptosis. In this study, we identified a novel mouse PKC{delta} isoform named PKC{delta}IX (Genebank Accession No. (HQ840432)). PKC{delta}IX is generated by alternative splicing and is ubiquitously expressed, as seen in its full-length PKC{delta}. PKC{delta}IX lacks the C1 domain, the caspase 3 cleavage site, and the ATP binding site but preserves an almost intact c-terminal catalytic domain and a nuclear localization signal (NLS). The structural characteristics of PKC{delta}IX provided a possibility that this PKC{delta} isozyme functions as a novel dominant-negative form for PKC{delta} due to its lack of the ATP-binding domain that is required for the kinase activity of PKC{delta}. Indeed, overexpression of PKC{delta}IX significantly inhibited etoposide-induced apoptosis in NIH3T3 cells. In addition, an in vitro kinase assay showed that recombinant PKC{delta}IX protein could competitively inhibit the kinase activity of PKC{delta}. We conclude that PKC{delta}IX can function as a natural dominant-negative inhibitor of PKC{delta}in vivo.

Delta Dynamics

DEFF Research Database (Denmark)

Bendixen, Mette

. The warming air temperature affects the soil temperature and permafrost thaws and destabilizes the material in the coastal zone. In Greenland, the warming temperature lowers the surface mass balance of the Greenland Ice Sheet and more material is transported to the coastal zone. The sea ice extent is thinning...... of a fjord and the second type is a wider fan-shaped open delta. Most deltas are directly coupled to the Greenland Ice Sheet or local icecaps and are highly influenced by the dynamics in the catchments. It is demonstrated how a modern changing climate directly affects delta dynamics, and that Greenlandic...... deltas are prograding, contrary to the global trend showing eroding Arctic coasts. Moreover, it is revealed that the increasing proglacial freshwater runoff, caused by a lowering of the surface mass balance of the Greenland Ice Sheet is the main determining agent in delta progradation. The final part...

The Potential of Tiger Prawn Fry from Delta Mahakam, East Kalimantan Indonesia

Directory of Open Access Journals (Sweden)

Bob Suroso

2013-10-01

Full Text Available Normal 0 false false false IN X-NONE X-NONE Most of the life cycle of tiger prawns were estuarine (Delta Mahakam. In the juvenile stage life in estuarine and the adult stage in marine. The research objective is to assess the potential of the tiger prawn fry catches in the Mahakam Delta, as a source of tiger prawn fry in the Mahakam Delta area farms. Research using interviews and descriptive analysis through monitoring with fishermen. The results showed that the fry tiger prawn from the Delta Mahakam there on the beaches or the edge of the sea where the water is shallow and slightly brackish, as in the Delta Mahakam. Fry can be captured by using rumpon. Tiger prawns fry from Delta Mahakam durability is relatively higher than fry from the hatchery. However, the number and continuity of fry very limited because it depends on the season. Abundance of fry is determined by the number of larvae produced in the wild and their survival is greatly influenced by the availability of food. /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Doi: 10.12777/ijse.6.1.43-46 [How to cite this article: Suroso, B., Hutabarat, J., and Afiati, N. (2013. The Potential of Tiger Prawn Fry from Delta Mahakam, East Kalimantan Indonesia, International Journal of Science and Engineering, 6(1,43-46. Doi: 10.12777/ijse.6.1.43-46

75 FR 38412 - Safety Zone; San Diego POPS Fireworks, San Diego, CA

Science.gov (United States)

2010-07-02

...-AA00 Safety Zone; San Diego POPS Fireworks, San Diego, CA AGENCY: Coast Guard, DHS. ACTION: Temporary... waters of San Diego Bay in support of the San Diego POPS Fireworks. This safety zone is necessary to... San Diego POPS Fireworks, which will include fireworks presentations conducted from a barge in San...

Holocene evolution of a wave-dominated fan-delta: Godavari delta, India

Science.gov (United States)

Saito, Y.; Nageswara Rao, K.; Nagakumar, K.; Demudu, G.; Rajawat, A.; Kubo, S.; Li, Z.

2013-12-01

The Godavari delta is one of the world's largest wave-dominated deltas. The Godavari River arises in the Western Ghats near the west coast of India and drains an area of about 3.1x10^5 km^2, flowing about 1465 km southeast across the Indian peninsula to the Bay of Bengal. The Godavari delta consists of a gentle seaward slope from its apex (12 m elevation) at Rajahmundry and a coastal beach-ridge plain over a distance of about 75 km and covers ~5200 km^2 as a delta plain. The river splits into two major distributary channels, the Gautami and the Vasishta, at a barrage constructed in the mid-1800s. The coastal environment of the deltaic coast is microtidal (~1 m mean tidal range) and wave-dominated (~1.5 m mean wave height in the June-September SW monsoon season, ~0.8 m in the NE monsoon season). Models of the Holocene evolution of the Godavari delta have changed from a zonal progradation model (e.g. Nageswara Rao & Sadakata, 1993) to a truncated cuspate delta model (Nageswara Rao et al., 2005, 2012). Twelve borehole cores (340 m total length), taken in the coastal delta plain during 2010-2013, yielded more than 100 C-14 dates. Sediment facies and C-14 dates from these and previous cores and remote-sensing data support a new delta evolution model. The Holocene coastal delta plain is divided into two parts by a set of linear beach ridges 12-14 km landward from the present shoreline in the central part of the delta. The location of the main depocenter (lobe) has shifted during the Holocene from 1) the center to 2) the west, 3) east, 4) center, 5) west, and 6) east. The linear beach ridges separate the first three from the last three stages. These lobe shifts are controlled by river channel shifts near the apex. Just as the current linear shoreline of the central part of the delta and the concave-up nearshore topography are the result of coastal erosion of a cuspate delta, the linear beach ridges indicate a former eroded shoreline. An unconformity within the deltaic

Spatiotemporal dynamics of carbon dioxide and methane fluxes from agricultural and restored wetlands in the California Delta

Science.gov (United States)

Hatala, Jaclyn Anne

The Sacramento-San Joaquin Delta in California was drained for agriculture and human settlement over a century ago, resulting in extreme rates of soil subsidence and release of CO2 to the atmosphere from peat oxidation. Because of this century-long ecosystem carbon imbalance where heterotrophic respiration exceeded net primary productivity, most of the land surface in the Delta is now up to 8 meters below sea level. To potentially reverse this trend of chronic carbon loss from Delta ecosystems, land managers have begun converting drained lands back to flooded ecosystems, but at the cost of increased production of CH4, a much more potent greenhouse gas than CO2. To evaluate the impacts of inundation on the biosphere-atmophere exchange of CO2 and CH4 in the Delta, I first measured and analyzed net fluxes of CO2 and CH4 for two continuous years with the eddy covariance technique in a drained peatland pasture and a recently re-flooded rice paddy. This analysis demonstrated that the drained pasture was a consistent large source of CO2 and small source of CH 4, whereas the rice paddy was a mild sink for CO2 and a mild source of CH4. However more importantly, this first analysis revealed nuanced complexities for measuring and interpreting patterns in CO2 and CH4 fluxes through time and space. CO2 and CH4 fluxes are inextricably linked in flooded ecosystems, as plant carbon serves as the primary substrate for the production of CH4 and wetland plants also provide the primary transport pathway of CH4 flux to the atmosphere. At the spatially homogeneous rice paddy during the summer growing season, I investigated rapid temporal coupling between CO2 and CH4 fluxes. Through wavelet Granger-causality analysis, I demonstrated that daily fluctuations in growing season gross ecosystem productivity (photosynthesis) exert a stronger control than temperature on the diurnal pattern in CH4 flux from rice. At a spatially heterogeneous restored wetland site, I analyzed the spatial coupling

75 FR 44942 - 2015 Resource Pool-Sierra Nevada Customer Service Region

Science.gov (United States)

2010-07-30

... California State University, Sacramento. 0.06140 2,052 Cawelo Water District 0.06140 2,052 Dry Creek...,052 South San Joaquin Irrigation District... 0.01400 468 Stockton, Port of 0.02421 809 Truckee Donner...

Longitudinal heterogeneity of flow and heat fluxes in a large lowland river: A study of the San Joaquin River, CA, USA during a large-scale flow experiment

Science.gov (United States)

Bray, E. N.; Dunne, T.; Dozier, J.

2011-12-01

Systematic downstream variation of channel characteristics, scaled by flow affects the transport and distribution of heat throughout a large river. As water moves through a river channel, streamflow and velocity may fluctuate by orders of magnitude primarily due to channel geometry, slope and resistance to flow, and the time scales of those fluctuations range from days to decades (Constantz et al., 1994; Lundquist and Cayan, 2002; McKerchar and Henderson, 2003). It is well understood that the heat budget of a river is primarily governed by surface exchanges, with the most significant surface flux coming from net shortwave radiation. The absorption of radiation at a given point in a river is determined by the wavelength-dependent index of refraction, expressed by the angle of refraction and the optical depth as a function of physical depth and the absorption coefficient (Dozier, 1980). Few studies consider the influence of hydrologic alteration to the optical properties governing net radiative heat transfer in a large lowland river, yet it is the most significant component of the heat budget and definitive to a river's thermal regime. We seek a physically based model without calibration to incorporate scale-dependent physical processes governing heat and flow dynamics in large rivers, how they change across the longitudinal profile, and how they change under different flow regimes. Longitudinal flow and heat flux analyses require synoptic flow time series from multiple sites along rivers, and few hydrometric networks meet this requirement (Larned et al, 2011). We model the energy budget in a regulated 240-km mainstem reach of the San Joaquin River California, USA equipped with multiple gaging stations from Friant Dam to its confluence with the Merced River during a large-scale flow experiment. We use detailed hydroclimatic observations distributed across the longitudinal gradient creating a non-replicable field experiment of heat fluxes across a range of flow regime

Anaerobic Transformation of Furfural by Methanococcus deltae (Delta)LH

Science.gov (United States)

Belay, N.; Boopathy, R.; Voskuilen, G.

1997-01-01

Methanococcus deltae (Delta)LH was grown on H(inf2)-CO(inf2) in the presence of various concentrations of furfural. Furfural at higher concentrations, namely, 20 and 25 mM, inhibited growth of this organism. At concentration of 5 and 10 mM, no inhibition of growth was observed. The other methanogens in this study were not inhibited by 10 mM furfural. Among the methanogens tested, M. deltae was capable of transforming furfural, whereas Methanobacterium thermoautotrophicum Marburg, Methanosarcina barkeri 227, Methanococcus thermolithotrophicus, and Methanobrevibacter ruminantium lacked this capability. One hundred percent removal of furfural was observed within 48 h of incubation in M. deltae cultures. The end product observed during furfural metabolism was furfuryl alcohol. An almost stoichiometric amount of furfuryl alcohol was produced by M. deltae. This transformation is likely to be of value in the detoxification of furfural and in its ultimate conversion to methane and CO(inf2) by anaerobic digestion. PMID:16535618

Wind-wave, and turbidity time-series data from Little Holland Tract (station HWC), Sacramento-San Joaquin Delta, California

Data.gov (United States)

Department of the Interior — Time series data of water surface elevation, wave height, and turbidity were collected in Little Holland Tract (LHT) beginning in December 2015 as part of “Wind-wave...

Growth laws for delta crevasses in the Mississippi River Delta: observations and modeling

Science.gov (United States)

Yocum, T. A.; Georgiou, I. Y.

2016-02-01

River deltas are accumulations of sedimentary deposits delivered by rivers via a network of distributary channels. Worldwide they are threatened by environmental changes, including subsidence, global sea level rise and a suite of other local factors. In the Mississippi River Delta (MRD) these impacts are exemplified, and have led to proposed solutions to build land that include sediment diversions, thereby reinitiating the delta cycle. While economically efficient, there are too few analogs of small deltas aside from laboratory studies, numerical modeling studies, theoretical approaches, and limited field driven observations. Anthropogenic crevasses in the modern delta are large enough to overcome limitations of laboratory deltas, and small enough to allow for "rapid" channel and wetland development, providing an ideal setting to investigate delta development mechanics. Crevasse metrics were obtained using a combination of geospatial tools, extracting key parameters (bifurcation length and width, channel order and depth) that were non-dimensionalized and compared to river-dominated delta networks previously studied. Analysis showed that most crevasses in the MRD appear to obey delta growth laws and delta allometry relationships, suggesting that crevasses do exhibit similar planform metrics to larger Deltas; the distance to mouth bar versus bifurcation order demonstrated to be a very reasonable first order estimate of delta-top footprint. However, some crevasses exhibited different growth metrics. To better understand the hydrodynamic and geomorphic controls governing crevasse evolution in the MRD, we assess delta dynamics via a suite of field observations and numerical modeling in both well-established and newly constructed crevasses. Our analysis suggests that delta development is affected by the relative influence of external (upstream and downstream) and internal controls on the hydrodynamic and sediment transport patterns in these systems.

Development and Testing of Physically-Based Methods for Filling Gaps in Remotely Sensed River Data: Annual Report Year 2

Science.gov (United States)

2012-09-30

near Deerlodge Park to support a USGS surface-water modeling study. Similar modeling projects on the San Joaquin and Sheboygan River were aided over...September 5-7, 2012, San Jose, Costa Rica, 8p. Nelson, J.M., McDonald, R.R., Kinzel, P.J., and Legleiter, C.J., 2011, Using computational models to...of the International Conference on Fluvial Hydraulics, September 5-7, 2012, San Jose, Costa Rica, 8p. *Nelson, J.M., McDonald, R.R., Kinzel, P.J

COMMD1 regulates the delta epithelial sodium channel ({delta}ENaC) through trafficking and ubiquitination

Energy Technology Data Exchange (ETDEWEB)

Chang, Tina; Ke, Ying; Ly, Kevin [Department of Physiology, University of Otago, P.O. Box 913, Dunedin 9054 (New Zealand); McDonald, Fiona J., E-mail: fiona.mcdonald@otago.ac.nz [Department of Physiology, University of Otago, P.O. Box 913, Dunedin 9054 (New Zealand)

2011-08-05

Highlights: {yields} The COMM domain of COMMD1 mediates binding to {delta}ENaC. {yields} COMMD1 reduces the cell surface population of {delta}ENaC. {yields} COMMD1 increases the population of {delta}ENaC-ubiquitin. {yields} Both endogenous and transfected {delta}ENaC localize with COMMD1 and transferrin suggesting they are located in early/recycling endosomes. -- Abstract: The delta subunit of the epithelial sodium channel ({delta}ENaC) is a member of the ENaC/degenerin family of ion channels. {delta}ENaC is distinct from the related {alpha}-, {beta}- and {gamma}ENaC subunits, known for their role in sodium homeostasis and blood pressure control, as {delta}ENaC is expressed in brain neurons and activated by external protons. COMMD1 (copper metabolism Murr1 domain 1) was previously found to associate with and downregulate {delta}ENaC activity. Here, we show that COMMD1 interacts with {delta}ENaC through its COMM domain. Co-expression of {delta}ENaC with COMMD1 significantly reduced {delta}ENaC surface expression, and led to an increase in {delta}ENaC ubiquitination. Immunocytochemical and confocal microscopy studies show that COMMD1 promoted localization of {delta}ENaC to the early/recycling endosomal pool where the two proteins were localized together. These results suggest that COMMD1 downregulates {delta}ENaC activity by reducing {delta}ENaC surface expression through promoting internalization of surface {delta}ENaC to an intracellular recycling pool, possibly via enhanced ubiquitination.

Future Deltas Utrecht University research focus area: towards sustainable management of sinking deltas

Science.gov (United States)

Stouthamer, E.; van Asselen, S.

2015-11-01

Deltas are increasingly under pressure from human impact and climate change. To deal with these pressures that threat future delta functioning, we need to understand interactions between physical, biological, chemical and social processes in deltas. This requires an integrated approach, in which knowledge on natural system functioning is combined with knowledge on spatial planning, land and water governance and legislative frameworks. In the research focus area Future Deltas of Utrecht University an interdisciplinary team from different research groups therefore works together. This allows developing integrated sustainable and resilient delta management strategies, which is urgently needed to prevent loss of vital delta services.

78 FR 19103 - Safety Zone; Spanish Navy School Ship San Sebastian El Cano Escort; Bahia de San Juan; San Juan, PR

Science.gov (United States)

2013-03-29

...-AA00 Safety Zone; Spanish Navy School Ship San Sebastian El Cano Escort; Bahia de San Juan; San Juan... temporary moving safety zone on the waters of Bahia de San Juan during the transit of the Spanish Navy... Channel entrance, and to protect the high ranking officials on board the Spanish Navy School Ship San...

Comparisons of Organic Carbon Analyzers and Related Importance to Water Quality Assessments

Directory of Open Access Journals (Sweden)

Murage Ngatia

2007-05-01

Full Text Available This study tested whether analyzers using different methods were equally capable of measuring organic carbon in diverse environmental water samples from California’s Sacramento/San Joaquin Delta and its watersheds. The study also evaluated whether the different instruments might provide differing organic carbon concentration measurements, which could in turn trigger (or not a regulatory requirement for enhanced coagulation at a water treatment plant. In Phase 1, samples were collected in eight monthly events at five stations associated with California’s State Water Project and analyzed using three high temperature combustion and three chemical oxidation instruments. Significant differences between instruments occurred in only 20% of the analyses. However, 80% of the observed differences were attributed to one combustion instrument that reported higher values compared to the other instruments. In Phase 2, four certified standards were analyzed with nine instruments. Results suggested that the main contributor of the observed differences was some instruments’ inability to remove inorganic carbon, an important step in the analytical process. There were no significant differences in the frequencies at which different instruments would have prescribed enhanced coagulation at a water treatment plant. We concluded that properly operating instruments using any of the standard methods were equally capable of analyzing the diverse concentration levels of organic carbon in the Delta.

Compact High Resolution SANS using very cold neutrons (VCN-SANS)

International Nuclear Information System (INIS)

Kennedy, S.; Yamada, M.; Iwashita, Y.; Geltenbort, P.; Bleuel, M.; Shimizu, H.

2011-01-01

SANS (Small Angle Neutron Scattering) is a popular method for elucidation of nano-scale structures. However science continually challenges SANS for higher performance, prompting exploration of ever-more exotic and expensive technologies. We propose a compact high resolution SANS, using very cold neutrons, magnetic focusing lens and a wide-angle spherical detector. This system will compete with modern 40 m pinhole SANS in one tenth of the length, matching minimum Q, Q-resolution and dynamic range. It will also probe dynamics using the MIEZE method. Our prototype lens (a rotating permanent-magnet sextupole), focuses a pulsed neutron beam over 3-5 nm wavelength and has measured SANS from micelles and polymer blends. (authors)

Remote sensing of California estuaries: Monitoring climate change and invasive species

Science.gov (United States)

Mulitsch, Melinda Jennifer

The spread of invasive species and climate change are among the most serious global environmental threats. The goal of this dissertation was to link inter-annual climate change and biological invasions at a landscape scale using novel remote sensing techniques applied to the San Francisco Bay/Sacramento- San Joaquin Delta Estuary. I evaluated the use of hyperspectral imagery for detecting invasive aquatic species in the Delta using 3 m HyMap hyperspectral imagery. The target invasive aquatics weeds were the emergent water hyacinth (Eichhornia crassipes) and the submerged Brazilian waterweed (Egeria densa). Data were analyzed using linear spectral mixture analysis (SMA). The results show the weeds were mapped with a classification accuracy of 90.6% compared to 2003 sample sites and 82.6% accuracy compared to 2004 sample sites. Brazilian waterweed locations were successfully mapped but the abundances were overestimated because we did not separate it from other submerged aquatic vegatation (SAV). I evaluated 3 m HyMap imagery, from 2004, for SAV species in the Delta, including: Brazilian waterweed ( Egeria densa), Eurasian watermilfoil (Myriophyllum spicatum ), curlyleaf pondweed (Potamogeton crispus), coontail (Ceratophyllum demersum), American pondweed (Potamogeton nodosus), fanwort (Cabomba caroliniana), and common elodea (Elodea canadensis). Data were analyzed using SMA with a classification accuracy of 84.4%. Spectral simulations of Brazilian waterweed and American pondweed show how spectral properties can change at different water depths and varying water quality. Finally I address the effect of inter-annual climate change on the estuary ecology in the San Francisco Bay by analyzing current (2002) and historical (1994-1996) Airborne Visible Infrared Imaging Spectrometer (AVIRIS) datasets to map salt marsh species distribution. The species in the estuary, Salicornia virginica, Spartinia foliosa, Scirpus robustus, and Distichlis spicata undergo dramatic changes in

Connectivity in river deltas

Science.gov (United States)

Passalacqua, P.; Hiatt, M. R.; Sendrowski, A.

2016-12-01

Deltas host approximately half a billion people and are rich in ecosystem diversity and economic resources. However, human-induced activities and climatic shifts are significantly impacting deltas around the world; anthropogenic disturbance, natural subsidence, and eustatic sea-level rise are major causes of threat to deltas and in many cases have compromised their safety and sustainability, putting at risk the people that live on them. In this presentation, I will introduce a framework called Delta Connectome for studying connectivity in river deltas based on different representations of a delta as a network. Here connectivity indicates both physical connectivity (how different portions of the system interact with each other) as well as conceptual (pathways of process coupling). I will explore several network representations and show how quantifying connectivity can advance our understanding of system functioning and can be used to inform coastal management and restoration. From connectivity considerations, the delta emerges as a leaky network that evolves over time and is characterized by continuous exchanges of fluxes of matter, energy, and information. I will discuss the implications of connectivity on delta functioning, land growth, and potential for nutrient removal.

Delta 2.0

DEFF Research Database (Denmark)

Skott, Jeppe; Skott, Charlotte Krog; Jess, Kristine

DELTA 2.0 er en ny og helt opdateret udgave af Delta, der i ti år været brugt i matematiklærernes grund-, efter- og videreuddannelse. DELTA 2.0 er seriens almene fagdidaktik. Der er også fagdidaktiske overvejelser i de øvrige bøger i serien, men de er knyttet til specifikt matematisk indhold. DELTA...... 2.0 behandler mere generelle matematikdidaktiske problemstillinger såsom læringsteoretiske overvejelser i forbindelse med matematik, centrale aspekter af det at undervise i matematik og digitale teknologier som værktøj til at støtte elevers faglige læring af matematik....

76 FR 45693 - Safety Zone; San Diego POPS Fireworks, San Diego, CA

Science.gov (United States)

2011-08-01

...-AA00 Safety Zone; San Diego POPS Fireworks, San Diego, CA AGENCY: Coast Guard, DHS. ACTION: Temporary... San Diego Bay in support of the San Diego POPS Fireworks. This safety zone is necessary to provide for... of the waterway during scheduled fireworks events. Persons and vessels will be prohibited from...

33 CFR 165.754 - Safety Zone: San Juan Harbor, San Juan, PR.

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Safety Zone: San Juan Harbor, San Juan, PR. 165.754 Section 165.754 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND... Zone: San Juan Harbor, San Juan, PR. (a) Regulated area. A moving safety zone is established in the...

Peat compaction in deltas : implications for Holocene delta evolution

NARCIS (Netherlands)

van Asselen, S.

2010-01-01

Many deltas contain substantial amounts of peat, which is the most compressible soil type. Therefore, peat compaction potentially leads to high amounts of subsidence in deltas. The main objective of this research was to quantify subsidence due to peat compaction in Holocene fluvial-deltaic settings

76 FR 9610 - Notice of Proposed Consent Decree Under the Clean Air Act

Science.gov (United States)

2011-02-18

... pollution control technology; undertake periodic equipment testing; and to submit required reports. The... resolves allegations by the Environmental Protection Agency and the San Joaquin Valley Unified Air Pollution Control District (``District''), asserted in a complaint filed together with the Consent Decree...

Mercury in birds of San Francisco Bay-Delta, California: trophic pathways, bioaccumulation, and ecotoxicological risk to avian reproduction

Science.gov (United States)

Ackerman, Joshua T.; Eagles-Smith, Collin A.; Heinz, Gary; De La Cruz, Susan E. W.; Takekawa, John Y.; Miles, A. Keith; Adelsbach, Terrence L.; Herzog, Mark P.; Bluso-Demers, Jill D.; Demers, Scott A.; Herring, Garth; Hoffman, David J.; Hartman, Christopher A.; Willacker, James J.; Suchanek, Thomas H.; Schwarzbach, Steven E.; Maurer, Thomas C.

2014-01-01

San Francisco Bay Estuary in northern California has a legacy of mercury contamination, which could reduce the health and reproductive success of waterbirds in the estuary. The goal of this study was to use an integrated field and laboratory approach to evaluate the risks of mercury exposure to birds in the estuary. We examined mercury bioaccumulation, and other contaminants of concern, in five waterbird species that depend heavily on San Francisco Bay Estuary for foraging and breeding habitat: American avocets (Recurvirostra americana), black-necked stilts (Himantopus mexicanus), Forster’s terns (Sterna forsteri), Caspian terns (Hydroprogne caspia), and surf scoters (Melanitta perspicillata). These species have different foraging habitats and diets that represent three distinct foraging guilds within the estuary’s food web. In this report, we provide an integrated synthesis of the primary findings from this study and results are synthesized from 54 peer-reviewed publications generated to date with other unpublished results.

Formation of conjugated delta8,delta10-double bonds by delta12-oleic-acid desaturase-related enzymes: biosynthetic origin of calendic acid.

Science.gov (United States)

Cahoon, E B; Ripp, K G; Hall, S E; Kinney, A J

2001-01-26

Divergent forms of the plant Delta(12)-oleic-acid desaturase (FAD2) have previously been shown to catalyze the formation of acetylenic bonds, epoxy groups, and conjugated Delta(11),Delta(13)-double bonds by modification of an existing Delta(12)-double bond in C(18) fatty acids. Here, we report a class of FAD2-related enzymes that modifies a Delta(9)-double bond to produce the conjugated trans-Delta(8),trans-Delta(10)-double bonds found in calendic acid (18:3Delta(8trans,10trans,12cis)), the major component of the seed oil of Calendula officinalis. Using an expressed sequence tag approach, cDNAs for two closely related FAD2-like enzymes, designated CoFADX-1 and CoFADX-2, were identified from a C. officinalis developing seed cDNA library. The deduced amino acid sequences of these polypeptides share 40-50% identity with those of other FAD2 and FAD2-related enzymes. Expression of either CoFADX-1 or CoFADX-2 in somatic soybean embryos resulted in the production of calendic acid. In embryos expressing CoFADX-2, calendic acid accumulated to as high as 22% (w/w) of the total fatty acids. In addition, expression of CoFADX-1 and CoFADX-2 in Saccharomyces cerevisiae was accompanied by calendic acid accumulation when induced cells were supplied exogenous linoleic acid (18:2Delta(9cis,12cis)). These results are thus consistent with a route of calendic acid synthesis involving modification of the Delta(9)-double bond of linoleic acid. Regiospecificity for Delta(9)-double bonds is unprecedented among FAD2-related enzymes and further expands the functional diversity found in this family of enzymes.

Environmental sensor networks and continuous data quality assurance to manage salinity within a highly regulated river basin

Energy Technology Data Exchange (ETDEWEB)

Quinn, N.W.T.; Ortega, R.; Holm, L.

2010-01-05

This paper describes a new approach to environmental decision support for salinity management in the San Joaquin Basin of California that focuses on web-based data sharing using YSI Econet technology and continuous data quality management using a novel software tool, Aquarius.

In situ volatiles from a single cultivar of Prunus dulcis and their relationship to navel orangeworm

Science.gov (United States)

Nonpareil almonds, Prunus dulcis, account for the largest percentage of almond varieties grown in the Central and San Joaquin valleys of California. Several studies have investigated the various non-volatile and volatile components of various plant parts; however, the volatile organic compound (VOC)...

An in situ, seasonal study of volatiles from a single cultivar of Prunus dulcis, and their relationship to navel orangeworm moth

Science.gov (United States)

Nonpareil almonds, Prunus dulcis, account for the largest percentage of almond varieties grown in the Central and San Joaquin valleys of California. Several studies have investigated the various non-volatile and volatile components of various plant parts; however, the volatile organic compound (VOC)...

Satellite mapping of crop water demand in California

Science.gov (United States)

Surface delivery of irrigation water in the San Joaquin Valley is becoming increasingly restricted due to urbanization and environmental regulation, and the strain is projected to worsen under most climate change scenarios. Remote sensing technology offers the potential to monitor crop evapotranspi...

1993 Annual Report: San Francisco estuary regional monitoring program for trace substances

Science.gov (United States)

Thompson, B.; Lacy, Jessica; Hardin, Dane; Grovhaug, Tom; Taberski, K.; Jassby, Alan D.; Cloern, James E.; Caffrey, J.; Cole, B.; Schoellhamer, David H.

1993-01-01

This first annual report of the San Francisco Estuary Regional Monitoring Program contains the results of monitoring measurements made in 1993. Measurements of conventional water quality parameters and trace contaminant concentrations were made at 16 stations throughout the Estuary three times during the year: the wet period (March), during declining Delta outflow (May), and during the dry period (September). Water toxicity tests were conducted at 8 of those stations. Measurements of sediment quality and contaminant concentrations were made at the same 16 stations during the wet and dry sampling periods. Sediment toxicity was measured at 8 of those stations. Transplanted, bagged bivalve bioaccumulation and condition was measured at 11 stations during the wet and dry sampling periods.

$\\delta$-Expansion at Finite Temperature

OpenAIRE

Ramos, Rudnei O.

1996-01-01

We apply the $\\delta$-expansion perturbation scheme to the $\\lambda \\phi^{4}$ self-interacting scalar field theory in 3+1 D at finite temperature. In the $\\delta$-expansion the interaction term is written as $\\lambda (\\phi^{2})^{ 1 + \\delta}$ and $\\delta$ is considered as the perturbation parameter. We compute within this perturbative approach the renormalized mass at finite temperature at a finite order in $\\delta$. The results are compared with the usual loop-expansion at finite temperature.

76 FR 39436 - Draft Environmental Impact Statement/Environmental Impact Report (EIS/EIR) and Notice of Scoping...

Science.gov (United States)

2011-07-06

...The Department of the Interior, Bureau of Reclamation (Reclamation) and the San Joaquin River Exchange Contractors Water Authority (Exchange Contractors) propose to prepare a joint EIS/EIR for a twenty-five year water transfer program (Program). The action would be to execute agreements for water transfers among Reclamation, Mid- Pacific Region; Central Valley Project (CVP) and State Water Project (SWP) contractors; and the Exchange Contractors for water service years 2014 to 2038. The Program would consist of the annual development and transfer of up to 150,000 acre-feet of substitute water (maximum of 100,000 acre-feet of conserved water and a maximum of 50,000 acre-feet from land fallowing) from the Exchange Contractors to other CVP contractors, to Reclamation's Refuge Water Supply Program (RWSP) for delivery to the San Joaquin Valley wetland habitat areas (wildlife refuges), and/or State Water Project (SWP) contractors.

Variation in leaf water delta D and delta 18O values during the evapotranspiration process

International Nuclear Information System (INIS)

Leopoldo, P.R.; Foloni, L.L.

1984-01-01

A theoretical model was developed to evaluate leaf water delta D and delta 18 O variation in relation to: leaf temperature, relative humidity converted to leaf temperature and delta D and delta 18 O values of atmospheric water vapour and soil water. (M.A.C.) [pt

Rise and Fall of one of World's largest deltas; the Mekong delta in Vietnam

Science.gov (United States)

Minderhoud, P. S. J.; Eslami Arab, S.; Pham, H. V.; Erkens, G.; van der Vegt, M.; Oude Essink, G.; Stouthamer, E.; Hoekstra, P.

2017-12-01

The Mekong delta is the third's largest delta in the world. It is home to almost 20 million people and an important region for the food security in South East Asia. As most deltas, the Mekong delta is the dynamic result of a balance of sediment supply, sea level rise and subsidence, hosting a system of fresh and salt water dynamics. Ongoing urbanization, industrialization and intensification of agricultural practices in the delta, during the past decades, resulted in growing domestic, agricultural and industrial demands, and have led to a dramatic increase of fresh water use. Since the year 2000, the amount of fresh groundwater extracted from the subsurface increased by 500%. This accelerated delta subsidence as the groundwater system compacts, with current sinking rates exceeding global sea level rise up to an order of magnitude. These high sinking rates have greatly altered the sediment budget of the delta and, with over 50% of the Mekong delta surface elevated less than 1 meter above sea level, greatly increase vulnerability to flooding and storm surges and ultimately, permanent inundation. Furthermore, as the increasingly larger extractions rapidly reduce the fresh groundwater reserves, groundwater salinization subsequently increases. On top of that, dry season low-flows by the Mekong river cause record salt water intrusion in the delta's estuarine system, creating major problems for rice irrigation. We present the work of three years research by the Dutch-Vietnamese `Rise and Fall' project on land subsidence and salinization in both groundwater and surface water in the Vietnamese Mekong delta.

Losing ground in mega-deltas: basin-scale response to existential threats to the Mekong Delta

Science.gov (United States)

Arias, M. E.; Kondolf, G. M.; Schmitt, R. J. P.; Carling, P. A.; Darby, S. E.; Bizzi, S.; Castelletti, A.; Cochrane, T. A.; Gibson, S.; Kummu, M.; Oeurng, C.; Rubin, Z.; Wild, T. B.

2017-12-01

The Mekong Delta is, in terms of the number of livelihoods it supports, its economic importance, and in its vulnerability to climate change and sinking lands, one of the world's critically threatened mega-deltas. Livelihoods depend on the mere existence of the delta, but also on ecosystem services provided by the delta's drainage basin spanning 795,000 km2 in six abutting countries. These ecosystem services include delivery of sand required to build delta land in the face of rising sea-levels and sediment bound nutrients, provision of spawning habitat for fish that are ultimately harvested in the delta, and hydrologic regulation driving the delta's unique flood-pulse regime. However, while the delta is mainly located in Vietnam, the basin of the Mekong River is shared among China, Myanmar, Laos, Thailand, Cambodia, and Vietnam. In the context of the region's dynamic growth, individual countries are pushing their own development agendas, which include extensive dam building, in-channel sand mining, construction of dykes and canals, and groundwater pumping, all of which contribute to subsidence and erosion of the Delta. Our synthesis of recent research indicates that most of the Mekong's delta land will likely fall below sea-level by 2100 as result of these drivers, exacerbating the impacts of global climatic changes. In this context, local infrastructural projects and changes in land- and water-management may temporarily mitigate some negative effects, but do not address the existential threat to the delta as a whole. To prevent, or at least substantially postpone, the drowning of the Mekong Delta requires identification of the key drivers and immediate concerted management actions on the basin-scale to change the trajectory of subsidence and sediment deficit. A specific challenge is to find the institutional arrangements in this transnational context that could support the needed management changes and equitably distribute costs and impacts. The Mekong Delta is

Shaken, Not Stirred: How Tidal Advection and Dispersion Mechanisms Rather Than Turbulent Mixing Impact the Movement and Fate of Aquatic Constituents and Fish in the California Central Valley

Science.gov (United States)

Sridharan, V. K.; Fong, D.; Monismith, S. G.; Jackson, D.; Russel, P.; Pope, A.; Danner, E.; Lindley, S. T.

2016-12-01

River deltas worldwide - home to nearly a billion people, thousands of species of flora and fauna, and economies worth trillions of dollars - have experienced massive ecosystem decline caused by urbanization, pollution, and water withdrawals. Habitat restoration in these systems is imperative not only for preserving endangered biomes, but also in sustaining human demand for freshwater and long term commercial viability. The sustainable management of heavily engineered, multi-use, branched tidal estuaries such as the Sacramento-San Joaquin Delta (henceforth, the Delta) requires utilizing physical transport and mixing process models. These inform us about the movement and fate of water quality constituents and aquatic organisms. This study identifies and quantifies the effects of various hydrodynamic mechanisms in the Delta across multiple spatio-temporal scales. A particle tracking model with accurate channel junction physics and an agent based model with realistic biological hypotheses of fish behavior were developed to study the movement and fate of tracers (surrogates for water quality constituents) and fish in the Delta. Simulations performed with these models were used to (1) determine the transport pathways through the Delta, (2) quantify the magnitude of transport and mixing processes along those pathways, and (3) describe the effects of physical stressors on fates of juvenile salmon. The Delta is largely dominated by large spatial scale advection by river flows, tidal pumping, and significantly increased dispersion through chaos due to the interaction of tidal flows with channel junctions. The movement and fate of simulated tracers and juvenile salmon are governed largely by the water diversion and pumping operations, transport pathways and chaotic tidal mixing mechanisms along those pathways. There is also a significant effect of predation on fish. These transport pathway and mechanistic dependencies indicate that restoration efforts which are harmonious

A Covered Cod-End and Tow-Path Evaluation of Midwater Trawl Gear Efficiency for Catching Delta Smelt (Hypomesus transpacificus

Directory of Open Access Journals (Sweden)

Lara Mitchell

2017-12-01

Full Text Available https://doi.org/10.15447/sfews.2017v15iss4art3For nearly 50 years, the California Department of Fish and Wildlife has used a midwater trawl to intensively monitor fish populations in the San Francisco Estuary during the fall, sampling over 100 locations each month. The data collected have been useful for calculating indices of fish abundance and for detecting and documenting the decline of the endangered fish species delta smelt (Hypomesus transpacificus. However, efforts to calculate estimates of absolute abundance have been hampered by the lack of information on gear efficiency, in particular questions about contact selectivity and the effect of tow method on catches. To answer these questions we conducted a study that used a covered cod end on a net towed either near the surface, referred to as a surface tow, or throughout the water column, referred to as an oblique tow. A contact selectivity model was fit to estimate the probability that a delta smelt that has come into contact with the net is retained in the cod end of the net conditional on its body length. Full retention of delta smelt was found to occur around 60 mm fork length. Delta smelt catch densities for the surface tows were an order of magnitude greater than densities in the oblique tows, suggesting a surface orientation at the sub-adult life stage. These results represent an important step in being able to calculate absolute abundance estimates of the delta smelt population size using decades’ worth of monitoring data.

Hepatitis delta genotypes in chronic delta infection in the northeast of Spain (Catalonia).

Science.gov (United States)

Cotrina, M; Buti, M; Jardi, R; Quer, J; Rodriguez, F; Pascual, C; Esteban, R; Guardia, J

1998-06-01

Based on genetic analysis of variants obtained around the world, three genotypes of the hepatitis delta virus have been defined. Hepatitis delta virus variants have been associated with different disease patterns and geographic distributions. To determine the prevalence of hepatitis delta virus genotypes in the northeast of Spain (Catalonia) and the correlation with transmission routes and clinical disease, we studied the nucleotide divergence of the consensus sequence of HDV RNA obtained from 33 patients with chronic delta hepatitis (24 were intravenous drug users and nine had no risk factors), and four patients with acute self-limited delta infection. Serum HDV RNA was amplified by the polymerase chain reaction technique and a fragment of 350 nucleotides (nt 910 to 1259) was directly sequenced. Genetic analysis of the nucleotide consensus sequence obtained showed a high degree of conservation among sequences (93% of mean). Comparison of these sequences with those derived from different geographic areas and pertaining to genotypes I, II and III, showed a mean sequence identity of 92% with genotype I, 73% with genotype II and 61% with genotype III. At the amino acid level (aa 115 to 214), the mean identity was 87% with genotype I, 63% with genotype II and 56% with genotype III. Conserved regions included the RNA editing domain, the carboxyl terminal 19 amino acids of the hepatitis delta antigen and the polyadenylation signal of the viral mRNA. Hepatitis delta virus isolates in the northeast of Spain are exclusively genotype I, independently of the transmission route and the type of infection. No hepatitis delta virus subgenotypes were found, suggesting that the origin of hepatitis delta virus infection in our geographical area is homogeneous.

Conservation Opportunities - San Joaquin Valley [ds422

Data.gov (United States)

California Natural Resource Agency — The California Departments of Fish and Game, Parks and Recreation, and Transportation (Caltrans) are collaborating to improve planning information for wildlife...

Invasive Plants - San Joaquin River [ds624

Data.gov (United States)

California Natural Resource Agency — The purpose of this work is to estimate the occurrence, distribution, approximate locations, and abundance of red sesbania (Sesbania punicea) and four other major...

Wildlife Linkages - San Joaquin Valley [ds417

Data.gov (United States)

California Natural Resource Agency — The California Departments of Fish and Game, Parks and Recreation, and Transportation (Caltrans) are collaborating to improve planning information for wildlife...

Specialty Reserves - San Joaquin Valley [ds418

Data.gov (United States)

California Natural Resource Agency — The California Departments of Fish and Game, Parks and Recreation, and Transportation (Caltrans) are collaborating to improve planning information for wildlife...

Wildlife Corridors - San Joaquin Valley [ds423

Data.gov (United States)

California Natural Resource Agency — The California Departments of Fish and Game, Parks and Recreation, and Transportation (Caltrans) are collaborating to improve planning information for wildlife...

Deltas on the move. Making deltas cope with the effects of climate change

International Nuclear Information System (INIS)

Reker, J.; Van Winden, A.; Braakhekke, W.; Vermaat, J.; Eleveld, M.; Janssen, R.; De Reus, N.; Omzigt, N.

2006-01-01