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Sample records for wannier function analysis

  1. Wannier function analysis of silicon-carbon alloys

    CERN Document Server

    Fitzhenry, P; Marks, N A; Cooper, N C; McKenzie, D R

    2003-01-01

    Maximally localized Wannier functions are the basis of a new technique for resolving ambiguous bonding issues for amorphous materials. Geometrical methods using the Wannier function representation provide an insightful chemical picture of local bonding and hybridization in disordered structures. Central to these methods is the notion of treating the Wannier function centres as a virtual atomic species with a well-defined degree of localization. Using Wannier function methods, we classify and quantify the types of bonding present in a sample of the ternary alloy hydrogenated amorphous silicon carbide, C sub 2 sub 2 Si sub 2 sub 2 H sub 2 sub 0. In addition to the bonding previously observed for this material, we see three-centre bonding and flipping bonds. We identify a cluster defect in our sample associated with these flipping bonds, and observe a temperature dependence of the bond flipping. This effect may be observable using temperature-dependent Raman spectroscopy.

  2. Partly occupied Wannier functions

    DEFF Research Database (Denmark)

    Thygesen, Kristian Sommer; Hansen, Lars Bruno; Jacobsen, Karsten Wedel

    2005-01-01

    We introduce a scheme for constructing partly occupied, maximally localized Wannier functions (WFs) for both molecular and periodic systems. Compared to the traditional occupied WFs the partly occupied WFs possess improved symmetry and localization properties achieved through a bonding-antibondin...

  3. Partly occupied Wannier functions: Construction and applications

    DEFF Research Database (Denmark)

    Thygesen, Kristian Sommer; Hansen, Lars Bruno; Jacobsen, Karsten Wedel

    2005-01-01

    We have developed a practical scheme to construct partly occupied, maximally localized Wannier functions (WFs) for a wide range of systems. We explain and demonstrate how the inclusion of selected unoccupied states in the definition of the WFs can improve both their localization and symmetry...

  4. Molecular transport calculations with Wannier Functions

    DEFF Research Database (Denmark)

    Thygesen, Kristian Sommer; Jacobsen, Karsten Wedel

    2005-01-01

    We present a scheme for calculating coherent electron transport in atomic-scale contacts. The method combines a formally exact Green's function formalism with a mean-field description of the electronic structure based on the Kohn-Sham scheme of density functional theory. We use an accurate plane-wave...

  5. On the construction of Wannier functions in topological insulators

    DEFF Research Database (Denmark)

    Cornean, Decebal Horia; Monaco, Domenico

    2017-01-01

    We investigate the possibility of constructing exponentially localized composite Wannier bases, or equivalently smooth periodic Bloch frames, for three-dimensional time-reversal symmetric topological insulators, both of bosonic and of fermionic type, so that the bases in question are also...... vanish, we provide an algorithm which constructs a “multi-step logarithm” that is employed to continuously deform the given family into a constant one, identically equal to the identity matrix. This algorithm leads to a constructive procedure to produce the composite Wannier bases mentioned above....

  6. Optimal Decay of Wannier functions in Chern and Quantum Hall Insulators

    Science.gov (United States)

    Monaco, Domenico; Panati, Gianluca; Pisante, Adriano; Teufel, Stefan

    2018-01-01

    We investigate the localization properties of independent electrons in a periodic background, possibly including a periodic magnetic field, as e. g. in Chern insulators and in quantum Hall systems. Since, generically, the spectrum of the Hamiltonian is absolutely continuous, localization is characterized by the decay, as {|x| → ∞} , of the composite (magnetic) Wannier functions associated to the Bloch bands below the Fermi energy, which is supposed to be in a spectral gap. We prove the validity of a localization dichotomy in the following sense: either there exist exponentially localized composite Wannier functions, and correspondingly the system is in a trivial topological phase with vanishing Hall conductivity, or the decay of any composite Wannier function is such that the expectation value of the squared position operator, or equivalently of the Marzari-Vanderbilt localization functional, is {+ ∞} . In the latter case, the Bloch bundle is topologically non-trivial, and one expects a non-zero Hall conductivity.

  7. Universal characterizing topological insulator and topological semi-metal with Wannier functions

    OpenAIRE

    Xiong, Ye; Tong, Peiqing

    2015-01-01

    The nontrivial evolution of Wannier functions (WF) for the occupied bands is a good starting point to understand topological insulator. By modifying the definition of WFs from the eigenstates of the projected position operator to those of the projected modular position operator, we are able to extend the usage of WFs to Weyl metal where the WFs in the old definition fails because of the lack of band gap at the Fermi energy. This extension helps us to universally understand topological insulat...

  8. First principles calculations for liquids and solids using maximally localized Wannier functions

    Science.gov (United States)

    Swartz, Charles W., VI

    The field of condensed matter computational physics has seen an explosion of applicability over the last 50+ years. Since the very first calculations with ENIAC and MANIAC the field has continued to pushed the boundaries of what is possible; from the first large-scale molecular dynamics simulation, to the implementation of Density Functional Theory and large scale Car-Parrinello molecular dynamics, to million-core turbulence calculations by Standford. These milestones represent not only technological advances but theoretical breakthroughs and algorithmic improvements as well. The work in this thesis was completed in the hopes of furthering such advancement, even by a small fraction. Here we will focus mainly on the calculation of electronic and structural properties of solids and liquids, where we shall implement a wide range of novel approaches that are both computational efficient and physically enlightening. To this end we routinely will work with maximally localized Wannier functions (MLWFs) which have recently seen a revival in mainstream scientific literature. MLWFs present us with interesting opportunity to calculate a localized orbital within the planewave formalism of atomistic simulations. Such a localization will prove to be invaluable in the construction of layer-based superlattice models, linear scaling hybrid functional schemes and model quasiparticle calculations. In the first application of MLWF we will look at modeling functional piezoelectricity in superlattices. Based on the locality principle of insulating superlattices, we apply the method of Wu et al to the piezoelectric strains of individual layers under iifixed displacement field. For a superlattice of arbitrary stacking sequence an accurate model is acquired for predicting piezoelectricity. By applying the model in the superlattices where ferroelectric and antiferrodistortive modes are in competition, functional piezoelectricity can be achieved. A strong nonlinear effect is observed and can

  9. Wannier-like functions and tight-binding parametrization for the manganese bands in CaMnO sub 3

    CERN Document Server

    Saha-Dasgupta, T

    2003-01-01

    We study the electronic band structure of CaMnO sub 3 , in order to understand the origin of the dispersion of the Mn(e sub g) bands, which is in contrast with the predicted dispersionless bands within the Anderson-Hasegawa double-exchange model with infinite Hund's-rule coupling. A downfolding technique within the newly developed muffin-tin orbital-based method is used to analyse the density-functional band structure obtained in the local spin density approximation. The finite Hund's coupling parameter in realistic situations allows the same-spin bands on the two manganese sublattices to mix producing a large dispersion. The calculated Wannier functions for the Mn(e sub g) bands also show large oxygen character at sites further away from nearest oxygen sites causing long-ranged Mn-Mn hopping processes.

  10. CONDENSED MATTER: ELECTRONIC STRUCTURE, ELECTRICAL, MAGNETIC, AND OPTICAL PROPERTIES Electronic Transport Calculations Using Maximally-Localized Wannier Functions

    Science.gov (United States)

    Wang, Neng-Ping

    2011-01-01

    I present a method to calculate the ballistic transport properties of atomic-scale structures under bias. The electronic structure of the system is calculated using the Kohn-Sham scheme of density functional theory (DFT). The DFT eigenvectors are then transformed into a set of maximally localized Wannier functions (MLWFs) [N. Marzari and D. Vanderbilt, Phys. Rev. B 56 (1997) 12847]. The MLWFs are used as a minimal basis set to obtain the Hamitonian matrices of the scattering region and the adjacent leads, which are needed for transport calculation using the nonequilibrium Green's function formalism. The coupling of the scattering region to the semi-infinite leads is described by the self-energies of the leads. Using the nonequilibrium Green's function method, one calculates self-consistently the charge distribution of the system under bias and evaluates the transmission and current through the system. To solve the Poisson equation within the scheme of MLWFs I introduce a computationally efficient method. The method is applied to a molecular hydrogen contact in two transition metal monatomic wires (Cu and Pt). It is found that for Pt the I-V characteristics is approximately linear dependence, however, for Cu the I-V characteristics manifests a linear dependence at low bias voltages and exhibits apparent nonlinearity at higher bias voltages. I have also calculated the transmission in the zero bias voltage limit for a single CO molecule adsorbed on Cu and Pt monatomic wires. While a chemical scissor effect occurs for the Cu monatomic wire with an adsorbed CO molecule, it is absent for the Pt monatomic wire due to the contribution of d-orbitals at the Fermi energy.

  11. Optical second harmonic generation from Wannier excitons

    DEFF Research Database (Denmark)

    Pedersen, Thomas Garm; Cornean, Horia

    2007-01-01

    , a simplified three-band Wannier exciton model of cubic semiconductors is applied and a closed form expression for the complex second harmonic response function including broadening is derived. Our calculated spectra are found to be in excellent agreement with the measured response near the band edge...

  12. Tuning effective interactions in high-Tc cuprates via apical oxygen atoms: New realization from the first-principles Wannier function approach

    Science.gov (United States)

    Yin, Weiguo; Ku, Wei

    2007-03-01

    Based on a novel first-principles Wannier function approach, the low-energy effective Hamiltonian for high-Tc cuprates is derived. The apical oxygen atoms are found to significantly modify the mobility and distribution of the Zhang-Rice singlets in the CuO2 plane, by tuning the effective hopping parameters t^' and t^'', and local chemical potential, μeff. Most remarkably, Veff, an additional effective repulsion (de- pairing) between neighboring doped holes, is found to be significantly tuned by a ``vacuum fluctuation'' mechanism inherited from the correlated multiband nature of the cuprates. Our results identify the apical oxygen states as the main material dependence of these systems and provide a microscopic avenue to the understanding of recent spectroscopic imaging STM data [K. McElroy et al., Science 309, 1048 (2005)].

  13. Wannier-Bloch approach to localization in high harmonics generation in solids

    CERN Document Server

    Osika, Edyta N; Ortmann, Lisa; Suárez, Noslen; Pérez-Hernández, Jose Antonio; Szafran, Bartłomiej; Ciappina, Marcelo F; Sols, Fernando; Landsman, Alexandra S; Lewenstein, Maciej

    2016-01-01

    Emission of high-order harmonics from solids provides a new avenue in attosecond science. On one hand, it allows to investigate fundamental processes of the non-linear response of electrons driven by a strong laser pulse in a periodic crystal lattice. On the other hand, it opens new paths toward efficient attosecond pulse generation, novel imaging of electronic wave functions, and enhancement of high-order harmonic generation (HHG) intensity. A key feature of HHG in a solid (as compared to the well-understood phenomena of HHG in an atomic gas) is the delocalization of the process, whereby an electron ionized from one site in the periodic lattice may recombine with any other. Here, we develop an analytic model, based on the localized Wannier wave functions in the valence band and delocalized Bloch functions in the conduction band. This Wannier-Bloch approach assesses the contributions of individual lattice sites to the HHG process, and hence addresses precisely the question of localization of harmonic emission...

  14. Wannier-Bloch Approach to Localization in High-Harmonics Generation in Solids

    Directory of Open Access Journals (Sweden)

    Edyta N. Osika

    2017-05-01

    Full Text Available Emission of high-order harmonics from solids provides a new avenue in attosecond science. On the one hand, it allows us to investigate fundamental processes of the nonlinear response of electrons driven by a strong laser pulse in a periodic crystal lattice. On the other hand, it opens new paths toward efficient attosecond pulse generation, novel imaging of electronic wave functions, and enhancement of high-order harmonic-generation (HHG intensity. A key feature of HHG in a solid (as compared to the well-understood phenomenon of HHG in an atomic gas is the delocalization of the process, whereby an electron ionized from one site in the periodic lattice may recombine in any other. Here, we develop an analytic model, based on the localized Wannier wave functions in the valence band and delocalized Bloch functions in the conduction band. This Wannier-Bloch approach assesses the contributions of individual lattice sites to the HHG process and hence precisely addresses the question of localization of harmonic emission in solids. We apply this model to investigate HHG in a ZnO crystal for two different orientations, corresponding to wider and narrower valence and conduction bands, respectively. Interestingly, for narrower bands, the HHG process shows significant localization, similar to harmonic generation in atoms. For all cases, the delocalized contributions to HHG emission are highest near the band-gap energy. Our results pave the way to controlling localized contributions to HHG in a solid crystal.

  15. Wannier-Mott Excitons in Nanoscale Molecular Ices

    Science.gov (United States)

    Chen, Y.-J.; Muñoz Caro, G. M.; Aparicio, S.; Jiménez-Escobar, A.; Lasne, J.; Rosu-Finsen, A.; McCoustra, M. R. S.; Cassidy, A. M.; Field, D.

    2017-10-01

    The absorption of light to create Wannier-Mott excitons is a fundamental feature dictating the optical and photovoltaic properties of low band gap, high permittivity semiconductors. Such excitons, with an electron-hole separation an order of magnitude greater than lattice dimensions, are largely limited to these semiconductors but here we find evidence of Wannier-Mott exciton formation in solid carbon monoxide (CO) with a band gap of >8 eV and a low electrical permittivity. This is established through the observation that a change of a few degrees K in deposition temperature can shift the electronic absorption spectra of solid CO by several hundred wave numbers, coupled with the recent discovery that deposition of CO leads to the spontaneous formation of electric fields within the film. These so-called spontelectric fields, here approaching 4 ×107 V m-1 , are strongly temperature dependent. We find that a simple electrostatic model reproduces the observed temperature dependent spectral shifts based on the Stark effect on a hole and electron residing several nm apart, identifying the presence of Wannier-Mott excitons. The spontelectric effect in CO simultaneously explains the long-standing enigma of the sensitivity of vacuum ultraviolet spectra to the deposition temperature.

  16. First-principles calculation of nonlinear optical responses by Wannier interpolation

    Science.gov (United States)

    Wang, Chong; Liu, Xiaoyu; Kang, Lei; Gu, Bing-Lin; Xu, Yong; Duan, Wenhui

    2017-09-01

    Various nonlinear optical (NLO) responses, like shift current and second harmonic generation (SHG), are revealed to be closely related to topological quantities involving the Berry connection and Berry curvature. First-principles prediction of NLO responses is of great importance to fundamental research and device design, but efficient computational methods are still lacking. The main challenge is that the calculations require a very dense k -point sampling that is computationally expensive and a proper treatment of the gauge problem for topological quantities. Here we present a Wannier interpolation method for first-principles calculation of NLO responses, which overcomes the challenge. This method interpolates physical quantities accurately for any desired k point with little computational cost and constructs a smooth gauge by the perturbation theory. To demonstrate the method, we study shift current of monolayer GeS and WS2 as well as SHG of bulk GaAs, getting good agreements with previous results. We show that the traditional sum rule method converges slowly with the number of bands, whereas the perturbation way does not. Moreover, our method is easily adapted to build tight-binding models for the following theoretical investigations. Last but not least, the method is compatible with most first-principles approaches, including density functional theory and beyond. With these advantages, Wannier interpolation is a promising method for first-principles studies of NLO phenomena.

  17. Functional analysis

    CERN Document Server

    Kesavan, S

    2009-01-01

    The material presented in this book is suited for a first course in Functional Analysis which can be followed by Masters students. While covering all the standard material expected of such a course, efforts have been made to illustrate the use of various theorems via examples taken from differential equations and the calculus of variations, either through brief sections or through exercises. In fact, this book will be particularly useful for students who would like to pursue a research career in the applications of mathematics. The book includes a chapter on weak and weak topologies and their applications to the notions of reflexivity, separability and uniform convexity. The chapter on the Lebesgue spaces also presents the theory of one of the simplest classes of Sobolev spaces. The book includes a chapter on compact operators and the spectral theory for compact self-adjoint operators on a Hilbert space. Each chapter has large collection of exercises at the end. These illustrate the results of the text, show ...

  18. Significance of decay mechanism into continuum in dynamical Wannier-Stark ladder

    Energy Technology Data Exchange (ETDEWEB)

    Nemoto, Yuya [Graduate School of Pure and Applied Sciences, University of Tsukuba, Tsukuba, 305-8573 (Japan); Maeshima, Nobuya; Hino, Ken-ichi [Faculty of Pure and Applied Sciences, University of Tsukuba, Tsukuba 305-8573, Japan and Center for computational Sciences, University of Tsukuba, Tsukuba 305-8577 (Japan)

    2013-12-04

    We examine the resonance structure of photodressed electron states of laser-driven Wannier-Stark ladder, namely, dynamic Wannier-Stark ladder, in terms of the excess density of states (DOS) closely related to a lifetime of the state of concern. It is revealed that the resonance structure in the strong laser-field region shows clear dependence on the ratio, η, of a Bloch-frequency to a laser frequency. As the laser strength increases, for η = 1, the excess DOS becomes involved with a lot of newly-growing resonance peaks. This result would be understood from the viewpoint of a Fano-like decay-mechanism caused by a multichannel continuum effect, in marked contrast to the cases of larger η’s; for η = 3, the excess DOS just is found to show a pronounced red-shift of a single dominant peak caused by a single-channel continuum effect.

  19. Functional Object Analysis

    DEFF Research Database (Denmark)

    Raket, Lars Lau

    We propose a direction it the field of statistics which we will call functional object analysis. This subfields considers the analysis of functional objects defined on continuous domains. In this setting we will focus on model-based statistics, with a particularly emphasis on mixed......-effect formulations, where the observed functional signal is assumed to consist of both fixed and random functional effects. This thesis takes the initial steps toward the development of likelihood-based methodology for functional objects. We first consider analysis of functional data defined on high...

  20. Functional data analysis

    CERN Document Server

    Ramsay, J O

    1997-01-01

    Scientists today collect samples of curves and other functional observations. This monograph presents many ideas and techniques for such data. Included are expressions in the functional domain of such classics as linear regression, principal components analysis, linear modelling, and canonical correlation analysis, as well as specifically functional techniques such as curve registration and principal differential analysis. Data arising in real applications are used throughout for both motivation and illustration, showing how functional approaches allow us to see new things, especially by exploiting the smoothness of the processes generating the data. The data sets exemplify the wide scope of functional data analysis; they are drwan from growth analysis, meterology, biomechanics, equine science, economics, and medicine. The book presents novel statistical technology while keeping the mathematical level widely accessible. It is designed to appeal to students, to applied data analysts, and to experienced researc...

  1. Fundamentals of functional analysis

    CERN Document Server

    Farenick, Douglas

    2016-01-01

    This book provides a unique path for graduate or advanced undergraduate students to begin studying the rich subject of functional analysis with fewer prerequisites than is normally required. The text begins with a self-contained and highly efficient introduction to topology and measure theory, which focuses on the essential notions required for the study of functional analysis, and which are often buried within full-length overviews of the subjects. This is particularly useful for those in applied mathematics, engineering, or physics who need to have a firm grasp of functional analysis, but not necessarily some of the more abstruse aspects of topology and measure theory normally encountered. The reader is assumed to only have knowledge of basic real analysis, complex analysis, and algebra. The latter part of the text provides an outstanding treatment of Banach space theory and operator theory, covering topics not usually found together in other books on functional analysis. Written in a clear, concise manner,...

  2. Ab initio calculations and analysis of chemical bonding in SrTiO3 and SrZrO3 cubic crystals

    Science.gov (United States)

    Evarestov, R. A.; Tupitsyn, I. I.; Bandura, A. V.; Alexandrov, V. E.

    The possibility of the different first-principles methods to describe the chemical bonding in SrTiO3 and SrZrO3 cubic crystals is investigated. The local properties of the electronic structure (atomic charges, bond orders, atomic delocalization indexes, and polarization fractions) were calculated with different methods: traditional Mulliken population analysis in LCAO calculations, two projection techniques in plane-wave (PW) calculations, population analysis based on Wannier-type atomic orbitals, and chemical bonding analysis based on the localized Wannier functions for occupied (valence band) LCAO states. All the techniques considered except the traditional Mulliken analysis demonstrate that the ionicity of chemical bonding in SrZrO3 is larger than in SrTiO3, in agreement with the Zr and Ti electronegativities relation and the relative bandgaps observed.

  3. Kramers-Wannier duality and worldline representation for the SU(2) principal chiral model

    Science.gov (United States)

    Gattringer, Christof; Göschl, Daniel; Marchis, Carlotta

    2018-03-01

    In this letter we explore different representations of the SU(2) principal chiral model on the lattice. We couple chemical potentials to two of the conserved charges to induce finite density. This leads to a complex action such that the conventional field representation cannot be used for a Monte Carlo simulation. Using the recently developed Abelian color flux approach we derive a new worldline representation where the partition sum has only real and positive weights, such that a Monte Carlo simulation is possible. In a second step we transform the model to new dual variables in the Kramers-Wannier (KW) sense, such that the constraints are automatically fulfilled, and we obtain a second representation free of the complex action problem. We implement exploratory Monte Carlo simulations for both, the worldline, as well as the KW-dual form, for cross-checking the two dualizations and a first assessment of their potential for dual simulations.

  4. Lectures on Functional Analysis

    CERN Document Server

    Kurepa, Svetozar; Kraljević, Hrvoje

    1987-01-01

    This volume consists of a long monographic paper by J. Hoffmann-Jorgensen and a number of shorter research papers and survey articles covering different aspects of functional analysis and its application to probability theory and differential equations.

  5. Applied functional analysis

    CERN Document Server

    Griffel, DH

    2002-01-01

    A stimulating introductory text, this volume examines many important applications of functional analysis to mechanics, fluid mechanics, diffusive growth, and approximation. Detailed enough to impart a thorough understanding, the text is also sufficiently straightforward for those unfamiliar with abstract analysis. Its four-part treatment begins with distribution theory and discussions of Green's functions. Essentially independent of the preceding material, the second and third parts deal with Banach spaces, Hilbert space, spectral theory, and variational techniques. The final part outlines the

  6. Applied functional analysis

    CERN Document Server

    Oden, J Tinsley

    2010-01-01

    The textbook is designed to drive a crash course for beginning graduate students majoring in something besides mathematics, introducing mathematical foundations that lead to classical results in functional analysis. More specifically, Oden and Demkowicz want to prepare students to learn the variational theory of partial differential equations, distributions, and Sobolev spaces and numerical analysis with an emphasis on finite element methods. The 1996 first edition has been used in a rather intensive two-semester course. -Book News, June 2010

  7. Notes on functional analysis

    CERN Document Server

    Bhatia, Rajendra

    2009-01-01

    These notes are a record of a one semester course on Functional Analysis given by the author to second year Master of Statistics students at the Indian Statistical Institute, New Delhi. Students taking this course have a strong background in real analysis, linear algebra, measure theory and probability, and the course proceeds rapidly from the definition of a normed linear space to the spectral theorem for bounded selfadjoint operators in a Hilbert space. The book is organised as twenty six lectures, each corresponding to a ninety minute class session. This may be helpful to teachers planning a course on this topic. Well prepared students can read it on their own.

  8. (Non-)Abelian Kramers-Wannier duality and topological field theory

    CERN Document Server

    Severa, Pavol

    2002-01-01

    We study a connection between duality and topological field theories. First, 2d Kramers-Wannier duality is formulated as a simple 3d topological claim (more or less Poincare duality), and a similar formulation is given for higher-dimensional cases. In this form they lead to simple TFTs with boundary coloured in two colours. The statistical models live on the boundary of these TFTs, as in the CS/WZW or AdS/CFT correspondence. Classical models (Poisson-Lie T-duality) suggest a non-abelian generalization in the 2dcase, with abelian groups replaced by quantum groups. Amazingly, the TFT formulation solves the problem without computation: quantum groups appear in pictures, independently of the classical motivation. Connection with Chern-Simons theory appears at the symplectic level, and also in the pictures of the Drinfeld double: Reshetikhin-Turaev invariants of links in 3-manifolds, computed from the double, are included in these TFTs. All this suggests nice phenomena in higher dimensions.

  9. Nonlinear functional analysis

    CERN Document Server

    Deimling, Klaus

    1985-01-01

    topics. However, only a modest preliminary knowledge is needed. In the first chapter, where we introduce an important topological concept, the so-called topological degree for continuous maps from subsets ofRn into Rn, you need not know anything about functional analysis. Starting with Chapter 2, where infinite dimensions first appear, one should be familiar with the essential step of consider­ ing a sequence or a function of some sort as a point in the corresponding vector space of all such sequences or functions, whenever this abstraction is worthwhile. One should also work out the things which are proved in § 7 and accept certain basic principles of linear functional analysis quoted there for easier references, until they are applied in later chapters. In other words, even the 'completely linear' sections which we have included for your convenience serve only as a vehicle for progress in nonlinearity. Another point that makes the text introductory is the use of an essentially uniform mathematical languag...

  10. Optimally localized Wannier functions for quasi one-dimensional nonperiodic insulators

    DEFF Research Database (Denmark)

    Cornean, Horia; Nenciu, A.; Nenciu, Gheorghe

    It is proved that for general, not necessarily periodic quasi one dimensional systems, the band position operator corresponding to an isolated part of the energy spectrum has discrete spectrum and its eigenfunctions have the same spatial localization as the corresponding spectral projection. As a...

  11. Optimally localized Wannier functions for quasi one-dimensional nonperiodic insulators

    DEFF Research Database (Denmark)

    Cornean, Horia; Nenciu, A.; Nenciu, Gheorghe

    2008-01-01

    It is proved that for general, not necessarily periodic, quasi one-dimensional systems the band position operator corresponding to an isolated part of the energy spectrum has discrete spectrum and its eigenfunctions have the same spatial localization as the corresponding spectral projection. As a...

  12. Function Point Analysis Depot

    Science.gov (United States)

    Muniz, R.; Martinez, El; Szafran, J.; Dalton, A.

    2011-01-01

    The Function Point Analysis (FPA) Depot is a web application originally designed by one of the NE-C3 branch's engineers, Jamie Szafran, and created specifically for the Software Development team of the Launch Control Systems (LCS) project. The application consists of evaluating the work of each developer to be able to get a real estimate of the hours that is going to be assigned to a specific task of development. The Architect Team had made design change requests for the depot to change the schema of the application's information; that information, changed in the database, needed to be changed in the graphical user interface (GUI) (written in Ruby on Rails (RoR and the web service/server side in Java to match the database changes. These changes were made by two interns from NE-C, Ricardo Muniz from NE-C3, who made all the schema changes for the GUI in RoR and Edwin Martinez, from NE-C2, who made all the changes in the Java side.

  13. Strange functions in real analysis

    CERN Document Server

    Kharazishvili, AB

    2005-01-01

    Weierstrass and Blancmange nowhere differentiable functions, Lebesgue integrable functions with everywhere divergent Fourier series, and various nonintegrable Lebesgue measurable functions. While dubbed strange or "pathological," these functions are ubiquitous throughout mathematics and play an important role in analysis, not only as counterexamples of seemingly true and natural statements, but also to stimulate and inspire the further development of real analysis.Strange Functions in Real Analysis explores a number of important examples and constructions of pathological functions. After introducing the basic concepts, the author begins with Cantor and Peano-type functions, then moves to functions whose constructions require essentially noneffective methods. These include functions without the Baire property, functions associated with a Hamel basis of the real line, and Sierpinski-Zygmund functions that are discontinuous on each subset of the real line having the cardinality continuum. Finally, he considers e...

  14. Theoretical numerical analysis a functional analysis framework

    CERN Document Server

    Atkinson, Kendall

    2005-01-01

    This textbook prepares graduate students for research in numerical analysis/computational mathematics by giving to them a mathematical framework embedded in functional analysis and focused on numerical analysis. This helps the student to move rapidly into a research program. The text covers basic results of functional analysis, approximation theory, Fourier analysis and wavelets, iteration methods for nonlinear equations, finite difference methods, Sobolev spaces and weak formulations of boundary value problems, finite element methods, elliptic variational inequalities and their numerical solu

  15. Functional Analysis in Interdisciplinary Applications

    CERN Document Server

    Nursultanov, Erlan; Ruzhansky, Michael; Sadybekov, Makhmud

    2017-01-01

    This volume presents current research in functional analysis and its applications to a variety of problems in mathematics and mathematical physics. The book contains over forty carefully refereed contributions to the conference “Functional Analysis in Interdisciplinary Applications” (Astana, Kazakhstan, October 2017). Topics covered include the theory of functions and functional spaces; differential equations and boundary value problems; the relationship between differential equations, integral operators and spectral theory; and mathematical methods in physical sciences. Presenting a wide range of topics and results, this book will appeal to anyone working in the subject area, including researchers and students interested to learn more about different aspects and applications of functional analysis.

  16. Automatic Functional Harmonic Analysis

    NARCIS (Netherlands)

    de Haas, W.B.|info:eu-repo/dai/nl/304841250; Magalhães, J.P.; Wiering, F.|info:eu-repo/dai/nl/141928034; Veltkamp, R.C.|info:eu-repo/dai/nl/084742984

    2013-01-01

    Music scholars have been studying tonal harmony intensively for centuries, yielding numerous theories and models. Unfortunately, a large number of these theories are formulated in a rather informal fashion and lack mathematical precision. In this article we present HarmTrace, a functional model of

  17. Function Analysis and Decomposistion using Function Analysis Systems Technique

    Energy Technology Data Exchange (ETDEWEB)

    Wixson, James Robert

    1999-06-01

    The "Father of Value Analysis", Lawrence D. Miles, was a design engineer for General Electric in Schenectady, New York. Miles developed the concept of function analysis to address difficulties in satisfying the requirements to fill shortages of high demand manufactured parts and electrical components during World War II. His concept of function analysis was further developed in the 1960s by Charles W. Bytheway, a design engineer at Sperry Univac in Salt Lake City, Utah. Charles Bytheway extended Mile's function analysis concepts and introduced the methodology called Function Analysis Systems Technique (FAST) to the Society of American Value Engineers (SAVE) at their International Convention in 1965 (Bytheway 1965). FAST uses intuitive logic to decompose a high level, or objective function into secondary and lower level functions that are displayed in a logic diagram called a FAST model. Other techniques can then be applied to allocate functions to components, individuals, processes, or other entities that accomplish the functions. FAST is best applied in a team setting and proves to be an effective methodology for functional decomposition, allocation, and alternative development.

  18. Function Analysis and Decomposistion using Function Analysis Systems Technique

    Energy Technology Data Exchange (ETDEWEB)

    J. R. Wixson

    1999-06-01

    The "Father of Value Analysis", Lawrence D. Miles, was a design engineer for General Electric in Schenectady, New York. Miles developed the concept of function analysis to address difficulties in satisfying the requirements to fill shortages of high demand manufactured parts and electrical components during World War II. His concept of function analysis was further developed in the 1960s by Charles W. Bytheway, a design engineer at Sperry Univac in Salt Lake City, Utah. Charles Bytheway extended Mile's function analysis concepts and introduced the methodology called Function Analysis Systems Techniques (FAST) to the Society of American Value Engineers (SAVE) at their International Convention in 1965 (Bytheway 1965). FAST uses intuitive logic to decompose a high level, or objective function into secondary and lower level functions that are displayed in a logic diagram called a FAST model. Other techniques can then be applied to allocate functions to components, individuals, processes, or other entities that accomplish the functions. FAST is best applied in a team setting and proves to be an effective methodology for functional decomposition, allocation, and alternative development.

  19. Functional Analysis in Virtual Environments

    Science.gov (United States)

    Vasquez, Eleazar, III; Marino, Matthew T.; Donehower, Claire; Koch, Aaron

    2017-01-01

    Functional analysis (FA) is an assessment procedure involving the systematic manipulation of an individual's environment to determine why a target behavior is occurring. An analog FA provides practitioners the opportunity to manipulate variables in a controlled environment and formulate a hypothesis for the function of a behavior. In previous…

  20. Function analysis of unknown genes

    DEFF Research Database (Denmark)

    Rogowska-Wrzesinska, A.

    2002-01-01

      This thesis entitled "Function analysis of unknown genes" presents the use of proteome analysis for the characterisation of yeast (Saccharomyces cerevisiae) genes and their products (proteins especially those of unknown function). This study illustrates that proteome analysis can be used...... be obtained using proteome analysis. Chapter 1 and 2 provide the basic theoretical aspects of proteome analysis, its principles, the main techniques involved and their use in the studies of the molecular biology of yeast cells. Chapter 3 presents the methods and tools involved in proteome analysis and used...... to multiple drug resistance in yeast. It analyses the cellular response to the overexpression of the Pdr5p - an ABC transporter protein that is responsible for resistance of yeast cells to several drugs and chemical compounds. It shows that the overexpression of Pdr5p triggers a strong cell stress response...

  1. Functional and shape data analysis

    CERN Document Server

    Srivastava, Anuj

    2016-01-01

    This textbook for courses on function data analysis and shape data analysis describes how to define, compare, and mathematically represent shapes, with a focus on statistical modeling and inference. It is aimed at graduate students in analysis in statistics, engineering, applied mathematics, neuroscience, biology, bioinformatics, and other related areas. The interdisciplinary nature of the broad range of ideas covered—from introductory theory to algorithmic implementations and some statistical case studies—is meant to familiarize graduate students with an array of tools that are relevant in developing computational solutions for shape and related analyses. These tools, gleaned from geometry, algebra, statistics, and computational science, are traditionally scattered across different courses, departments, and disciplines; Functional and Shape Data Analysis offers a unified, comprehensive solution by integrating the registration problem into shape analysis, better preparing graduate students for handling fu...

  2. Wavelets in functional data analysis

    CERN Document Server

    Morettin, Pedro A; Vidakovic, Brani

    2017-01-01

    Wavelet-based procedures are key in many areas of statistics, applied mathematics, engineering, and science. This book presents wavelets in functional data analysis, offering a glimpse of problems in which they can be applied, including tumor analysis, functional magnetic resonance and meteorological data. Starting with the Haar wavelet, the authors explore myriad families of wavelets and how they can be used. High-dimensional data visualization (using Andrews' plots), wavelet shrinkage (a simple, yet powerful, procedure for nonparametric models) and a selection of estimation and testing techniques (including a discussion on Stein’s Paradox) make this a highly valuable resource for graduate students and experienced researchers alike.

  3. Functional Analysis: Entering Hilbert Space

    DEFF Research Database (Denmark)

    Hansen, Vagn Lundsgaard

    between Hilbert spaces. Fredholm operators are of interest far beyond mathematical analysis, they also play a significant role in theoretical physics, differential geometry and topology with the famous Index Theorem proved by Michael Atiyah and Isadore Singer in 1963 as a highlight. With the addition...... of the new material on normed vector spaces and their operators, the book can hopefully serve as a general introduction to functional analysis viewed as a theory of infinite dimensional linear spaces and linear operators acting on them....

  4. Fifteen papers on functional analysis

    CERN Document Server

    Allakhverdiev, B P; Fainshtein, A S; Khelemskii, AYa; Klenina, LI

    1984-01-01

    The papers in this volume cover topics on functional analysis. They have been selected, translated, and edited from publications not otherwise translated into English under the auspices of the AMS-ASL-IMS Committee on Translations from Russian and Other Foreign Languages.

  5. Special functions in Fuzzy Analysis

    Directory of Open Access Journals (Sweden)

    Angel Garrido

    2006-01-01

    Full Text Available In the treatment of Fuzzy Logic an useful tool appears: the membership function, with the information about the degree of completion of a condition which defines the respective Fuzzy Set or Fuzzy Relation. With their introduction, it is possible to prove some results on the foundations of Fuzzy Logic and open new ways in Fuzzy Analysis.

  6. Citizen Participation: A Functional Analysis.

    Science.gov (United States)

    Lede, Naomi W.; Dixon, Hortense W.

    Citizen participation in Model Cities programs in ten southwestern cities is analyzed to determine the impact of federal assistance on housing in urban areas. The first section of the study provides a functional analysis of citizen participation in Model Cities, with special emphasis on performance criteria of resident involvement. Section two…

  7. Parametric functional principal component analysis.

    Science.gov (United States)

    Sang, Peijun; Wang, Liangliang; Cao, Jiguo

    2017-09-01

    Functional principal component analysis (FPCA) is a popular approach in functional data analysis to explore major sources of variation in a sample of random curves. These major sources of variation are represented by functional principal components (FPCs). Most existing FPCA approaches use a set of flexible basis functions such as B-spline basis to represent the FPCs, and control the smoothness of the FPCs by adding roughness penalties. However, the flexible representations pose difficulties for users to understand and interpret the FPCs. In this article, we consider a variety of applications of FPCA and find that, in many situations, the shapes of top FPCs are simple enough to be approximated using simple parametric functions. We propose a parametric approach to estimate the top FPCs to enhance their interpretability for users. Our parametric approach can also circumvent the smoothing parameter selecting process in conventional nonparametric FPCA methods. In addition, our simulation study shows that the proposed parametric FPCA is more robust when outlier curves exist. The parametric FPCA method is demonstrated by analyzing several datasets from a variety of applications. © 2017, The International Biometric Society.

  8. EVENT PLANNING USING FUNCTION ANALYSIS

    Energy Technology Data Exchange (ETDEWEB)

    Lori Braase; Jodi Grgich

    2011-06-01

    Event planning is expensive and resource intensive. Function analysis provides a solid foundation for comprehensive event planning (e.g., workshops, conferences, symposiums, or meetings). It has been used at Idaho National Laboratory (INL) to successfully plan events and capture lessons learned, and played a significant role in the development and implementation of the “INL Guide for Hosting an Event.” Using a guide and a functional approach to planning utilizes resources more efficiently and reduces errors that could be distracting or detrimental to an event. This integrated approach to logistics and program planning – with the primary focus on the participant – gives us the edge.

  9. Functional analysis theory and applications

    CERN Document Server

    Edwards, RE

    2011-01-01

    ""The book contains an enormous amount of information - mathematical, bibliographical and historical - interwoven with some outstanding heuristic discussions."" - Mathematical Reviews.In this massive graduate-level study, Emeritus Professor Edwards (Australian National University, Canberra) presents a balanced account of both the abstract theory and the applications of linear functional analysis. Written for readers with a basic knowledge of set theory, general topology, and vector spaces, the book includes an abundance of carefully chosen illustrative examples and excellent exercises at the

  10. Derived functors in functional analysis

    CERN Document Server

    Wengenroth, Jochen

    2003-01-01

    The text contains for the first time in book form the state of the art of homological methods in functional analysis like characterizations of the vanishing of the derived projective limit functor or the functors Ext1 (E, F) for Fréchet and more general spaces. The researcher in real and complex analysis finds powerful tools to solve surjectivity problems e.g. on spaces of distributions or to characterize the existence of solution operators. The requirements from homological algebra are minimized: all one needs is summarized on a few pages. The answers to several questions of V.P. Palamodov who invented homological methods in analysis also show the limits of the program.

  11. Topics in nonlinear functional analysis

    CERN Document Server

    Nirenberg, Louis

    2001-01-01

    Since its first appearance as a set of lecture notes published by the Courant Institute in 1974, this book served as an introduction to various subjects in nonlinear functional analysis. The current edition is a reprint of these notes, with added bibliographic references. Topological and analytic methods are developed for treating nonlinear ordinary and partial differential equations. The first two chapters of the book introduce the notion of topological degree and develop its basic properties. These properties are used in later chapters in the discussion of bifurcation theory (the possible br

  12. Functional Analysis: Entering Hilbert Space

    DEFF Research Database (Denmark)

    Hansen, Vagn Lundsgaard

    in a new chapter on Fredholm theory (Chapter 6). Fredholm theory originates in pioneering work of the Swedish mathematician Erik Ivar Fred-holm on integral equations, which inspired the study of a new class of bounded linear operators, known as Fredholm operators. Chapter 6 presents the basic elements...... between Hilbert spaces. Fredholm operators are of interest far beyond mathematical analysis, they also play a significant role in theoretical physics, differential geometry and topology with the famous Index Theorem proved by Michael Atiyah and Isadore Singer in 1963 as a highlight. With the addition...... of the new material on normed vector spaces and their operators, the book can hopefully serve as a general introduction to functional analysis viewed as a theory of infinite dimensional linear spaces and linear operators acting on them....

  13. Functional Analysis in Applied Mathematics and Engineering

    DEFF Research Database (Denmark)

    Pedersen, Michael

    1997-01-01

    Lecture notes for the course 01245 Functional Analysis. Consists of the first part of amonograph with the same title.......Lecture notes for the course 01245 Functional Analysis. Consists of the first part of amonograph with the same title....

  14. Functional analysis and treatment of diurnal bruxism.

    Science.gov (United States)

    Lang, Russell; Davenport, Katy; Britt, Courtney; Ninci, Jennifer; Garner, Jennifer; Moore, Melissa

    2013-01-01

    An analogue functional analysis identified attention as a function for a 5-year-old boy's bruxism (teeth grinding). Functional communication training resulted in a reduction of bruxism and an increase in alternative mands for attention. Results were maintained 3 weeks following the intervention. © Society for the Experimental Analysis of Behavior.

  15. Wavelet analysis of multifractal functions

    Science.gov (United States)

    Jaffard, Stephane

    1995-09-01

    Multifractal signals are characterized by a local Holder exponent that may change completely from point to point. We show that wavelet methods are an extremely efficient tool for determining the exact Holder exponent of a function, or at least, for getting some information about this Holder exponent, such as the Spectrum of Singularities. We construct functions that have a given Holder exponent in a deterministic setting and also in a probabilistic setting (we then obtain the Multifractional Brownian Motion); we also study the Multifractal Formalism for Functions and give some results about its validity.

  16. Basic methods of linear functional analysis

    CERN Document Server

    Pryce, John D

    2011-01-01

    Introduction to the themes of mathematical analysis, geared toward advanced undergraduate and graduate students. Topics include operators, function spaces, Hilbert spaces, and elementary Fourier analysis. Numerous exercises and worked examples.1973 edition.

  17. Wannier threshold theory for the description of the two-electron cusp in the ion-induced double ionization of atoms

    Energy Technology Data Exchange (ETDEWEB)

    Barrachina, R.O., E-mail: barra@cab.cnea.gov.ar [Centro Atómico Bariloche and Instituto Balseiro, Comisíon Nacional de Energía Atómica and Universidad Nacional de Cuyo, 8400 Bariloche, Río Negro (Argentina); Gulyás, L.; Sarkadi, L. [Institute for Nuclear Research of the Hungarian Academy of Sciences (ATOMKI), Pf. 51, H-4001 Debrecen (Hungary)

    2016-02-15

    The double electron capture into the continuum states of the projectile (double ECC) is investigated theoretically in collisions of 100 keV He{sup 2+} ions with He atoms. The process is described within the framework of the impact parameter and frozen-correlation approximations where the single-electron events are treated by the continuum distorted wave method. On the other hand, the Wannier theory is employed for describing the angular correlation between both ejected electrons. This treatment substantially improved the agreement between the theory and experiment as compared to the previous version of the theory (Gulyás et al., 2010) in which the correlation between the ejected electrons was taken into account by the Coulomb density of states approximation.

  18. Functional analysis, spectral theory, and applications

    CERN Document Server

    Einsiedler, Manfred

    2017-01-01

    This textbook provides a careful treatment of functional analysis and some of its applications in analysis, number theory, and ergodic theory. In addition to discussing core material in functional analysis, the authors cover more recent and advanced topics, including Weyl’s law for eigenfunctions of the Laplace operator, amenability and property (T), the measurable functional calculus, spectral theory for unbounded operators, and an account of Tao’s approach to the prime number theorem using Banach algebras. The book further contains numerous examples and exercises, making it suitable for both lecture courses and self-study. Functional Analysis, Spectral Theory, and Applications is aimed at postgraduate and advanced undergraduate students with some background in analysis and algebra, but will also appeal to everyone with an interest in seeing how functional analysis can be applied to other parts of mathematics.

  19. Differential analysis of matrix convex functions II

    DEFF Research Database (Denmark)

    Hansen, Frank; Tomiyama, Jun

    2009-01-01

    We continue the analysis in [F. Hansen, and J. Tomiyama, Differential analysis of matrix convex functions. Linear Algebra Appl., 420:102--116, 2007] of matrix convex functions of a fixed order defined in a real interval by differential methods as opposed to the characterization in terms of divide...

  20. Basic Functional Analysis Puzzles of Spectral Flow

    DEFF Research Database (Denmark)

    Booss-Bavnbek, Bernhelm

    2011-01-01

    We explain an array of basic functional analysis puzzles on the way to general spectral flow formulae and indicate a direction of future topological research for dealing with these puzzles.......We explain an array of basic functional analysis puzzles on the way to general spectral flow formulae and indicate a direction of future topological research for dealing with these puzzles....

  1. Functional Data Analysis with R and MATLAB

    CERN Document Server

    Ramsay, James; Graves, Spencer

    2009-01-01

    Scientists often collect samples of curves and other functional observations, and develop models where parameters are also functions. This title provides computer code in both the R and Matlab languages for a set of data analyses that showcase functional data analysis techniques.

  2. Linear functional analysis for scientists and engineers

    CERN Document Server

    Limaye, Balmohan V

    2016-01-01

    This book provides a concise and meticulous introduction to functional analysis. Since the topic draws heavily on the interplay between the algebraic structure of a linear space and the distance structure of a metric space, functional analysis is increasingly gaining the attention of not only mathematicians but also scientists and engineers. The purpose of the text is to present the basic aspects of functional analysis to this varied audience, keeping in mind the considerations of applicability. A novelty of this book is the inclusion of a result by Zabreiko, which states that every countably subadditive seminorm on a Banach space is continuous. Several major theorems in functional analysis are easy consequences of this result. The entire book can be used as a textbook for an introductory course in functional analysis without having to make any specific selection from the topics presented here. Basic notions in the setting of a metric space are defined in terms of sequences. These include total boundedness, c...

  3. Construction and analysis of cryptographic functions

    CERN Document Server

    Budaghyan, Lilya

    2015-01-01

    This book covers novel research on construction and analysis of optimal cryptographic functions such as almost perfect nonlinear (APN), almost bent (AB), planar and bent functions. These functions have optimal resistance to linear and/or differential attacks, which are the two most powerful attacks on symmetric cryptosystems. Besides cryptographic applications, these functions are significant in many branches of mathematics and information theory including coding theory, combinatorics, commutative algebra, finite geometry, sequence design and quantum information theory. The author analyzes equ

  4. Functional Analysis: Entering Hilbert Space

    DEFF Research Database (Denmark)

    Hansen, Vagn Lundsgaard

    of the theory of Fredholm operators on general Banach spaces, not only on Hilbert spaces, since this is important for applications of the theory. The more general setting with Banach spaces requires that we develop the theory of dual operators between Banach spaces to replace the use of adjoint operators...... between Hilbert spaces. Fredholm operators are of interest far beyond mathematical analysis, they also play a significant role in theoretical physics, differential geometry and topology with the famous Index Theorem proved by Michael Atiyah and Isadore Singer in 1963 as a highlight. With the addition......In the second edition, I have expanded the material on normed vector spaces and their operators presented in Chapter 1 to include proofs of the Open Map-ping Theorem, the Closed Graph Theorem and the Hahn-Banach The orem. The material on operators between normed vector spaces is further expanded...

  5. SURFACE TEXTURE ANALYSIS FOR FUNCTIONALITY CONTROL

    DEFF Research Database (Denmark)

    De Chiffre, Leonardo; Andreasen, Jan Lasson; Tosello, Guido

    This document is used in connection with three exercises of 3 hours duration as a part of the course VISION ONLINE – One week course on Precision & Nanometrology. The exercises concern surface texture analysis for functionality control, in connection with three different case stories. This document...... contains a short description of each case story, 3-D roughness parameters analysis and relation with the product’s functionality....

  6. Bioprospecting and Functional Analysis of Neglected Environments

    DEFF Research Database (Denmark)

    Vogt, Josef Korbinian

    annotation of a late Pleistocene horse metagenome and the functional annotation of the donkey genome. The functional analysis and the identification of novel proteolytic enzymes in the polar marine environment and the full transcriptome analysis of the carnivorous plant Dionaea muscipula is also presented...... of arctic marine metagenomes reveals bacterial strategies for deep sea persistence (Manuscript II). Furthermore, this extreme environment is a fertile ground to mine for novel proteolytic enzymes. Manuscript III presents a bioinformatics approach to identify sequences for potential commercialization...

  7. Constructing functional programs for grammar analysis problems

    NARCIS (Netherlands)

    Jeuring, J.T.; Swierstra, S.D.

    1995-01-01

    This paper discusses the derivation of functional programs for grammar analysis problems, such as the Empty problem and the Reachable problem. Grammar analysis problems can be divided into two classes: top-down problems such as Follow and Reachable, which are described in terms of the contexts of

  8. Spectral theory and nonlinear functional analysis

    CERN Document Server

    Lopez-Gomez, Julian

    2001-01-01

    This Research Note addresses several pivotal problems in spectral theory and nonlinear functional analysis in connection with the analysis of the structure of the set of zeroes of a general class of nonlinear operators. It features the construction of an optimal algebraic/analytic invariant for calculating the Leray-Schauder degree, new methods for solving nonlinear equations in Banach spaces, and general properties of components of solutions sets presented with minimal use of topological tools. The author also gives several applications of the abstract theory to reaction diffusion equations and systems.The results presented cover a thirty-year period and include recent, unpublished findings of the author and his coworkers. Appealing to a broad audience, Spectral Theory and Nonlinear Functional Analysis contains many important contributions to linear algebra, linear and nonlinear functional analysis, and topology and opens the door for further advances.

  9. DynaMod: dynamic functional modularity analysis.

    Science.gov (United States)

    Sun, Choong-Hyun; Hwang, Taeho; Oh, Kimin; Yi, Gwan-Su

    2010-07-01

    A comprehensive analysis of enriched functional categories in differentially expressed genes is important to extract the underlying biological processes of genome-wide expression profiles. Moreover, identification of the network of significant functional modules in these dynamic processes is an interesting challenge. This study introduces DynaMod, a web-based application that identifies significant functional modules reflecting the change of modularity and differential expressions that are correlated with gene expression profiles under different conditions. DynaMod allows the inspection of a wide variety of functional modules such as the biological pathways, transcriptional factor-target gene groups, microRNA-target gene groups, protein complexes and hub networks involved in protein interactome. The statistical significance of dynamic functional modularity is scored based on Z-statistics from the average of mutual information (MI) changes of involved gene pairs under different conditions. Significantly correlated gene pairs among the functional modules are used to generate a correlated network of functional categories. In addition to these main goals, this scoring strategy supports better performance to detect significant genes in microarray analyses, as the scores of correlated genes show the superior characteristics of the significance analysis compared with those of individual genes. DynaMod also offers cross-comparison between different analysis outputs. DynaMod is freely accessible at http://piech.kaist.ac.kr/dynamod.

  10. Functional Data Analysis Applied in Chemometrics

    DEFF Research Database (Denmark)

    Muller, Martha

    of heart plots for spectral data. The important aspect of registration, also called warping or alignment, emerges from both the chemometric and statistical perspectives. In Paper III we apply functional registration in the context of biomechanics, specically to data from a juggling experiment. The novelty....... Dietary eects on biomarkers of bone turnover in children were investigated as part of the pan-European DiOGenes dietary intervention trial. The metabolomics data in paper I originated from a pilot study of the DiOGenes trial. Overall this thesis gives an indication of the huge possibilities for functional......In this thesis we explore the use of functional data analysis as a method to analyse chemometric data, more specically spectral data in metabolomics. Functional data analysis is a vibrant eld in statistics. It has been rapidly expanding in both methodology and applications since it was made well...

  11. Pineal function: impact of microarray analysis

    DEFF Research Database (Denmark)

    Klein, David C; Bailey, Michael J; Carter, David A

    2009-01-01

    Microarray analysis has provided a new understanding of pineal function by identifying genes that are highly expressed in this tissue relative to other tissues and also by identifying over 600 genes that are expressed on a 24-h schedule. This effort has highlighted surprising similarity to the re......Microarray analysis has provided a new understanding of pineal function by identifying genes that are highly expressed in this tissue relative to other tissues and also by identifying over 600 genes that are expressed on a 24-h schedule. This effort has highlighted surprising similarity...... to the retina and has provided reason to explore new avenues of study including intracellular signaling, signal transduction, transcriptional cascades, thyroid/retinoic acid hormone signaling, metal biology, RNA splicing, and the role the pineal gland plays in the immune/inflammation response. The new...... foundation that microarray analysis has provided will broadly support future research on pineal function....

  12. Functional data analysis of sleeping energy expenditure.

    Directory of Open Access Journals (Sweden)

    Jong Soo Lee

    Full Text Available Adequate sleep is crucial during childhood for metabolic health, and physical and cognitive development. Inadequate sleep can disrupt metabolic homeostasis and alter sleeping energy expenditure (SEE. Functional data analysis methods were applied to SEE data to elucidate the population structure of SEE and to discriminate SEE between obese and non-obese children. Minute-by-minute SEE in 109 children, ages 5-18, was measured in room respiration calorimeters. A smoothing spline method was applied to the calorimetric data to extract the true smoothing function for each subject. Functional principal component analysis was used to capture the important modes of variation of the functional data and to identify differences in SEE patterns. Combinations of functional principal component analysis and classifier algorithm were used to classify SEE. Smoothing effectively removed instrumentation noise inherent in the room calorimeter data, providing more accurate data for analysis of the dynamics of SEE. SEE exhibited declining but subtly undulating patterns throughout the night. Mean SEE was markedly higher in obese than non-obese children, as expected due to their greater body mass. SEE was higher among the obese than non-obese children (p0.1, after post hoc testing. Functional principal component scores for the first two components explained 77.8% of the variance in SEE and also differed between groups (p = 0.037. Logistic regression, support vector machine or random forest classification methods were able to distinguish weight-adjusted SEE between obese and non-obese participants with good classification rates (62-64%. Our results implicate other factors, yet to be uncovered, that affect the weight-adjusted SEE of obese and non-obese children. Functional data analysis revealed differences in the structure of SEE between obese and non-obese children that may contribute to disruption of metabolic homeostasis.

  13. Quantitative proteomic analysis of Myc oncoprotein function

    OpenAIRE

    Shiio, Yuzuru; Donohoe, Sam; Yi, Eugene C.; Goodlett, David R.; Aebersold, Ruedi; Eisenman, Robert N.

    2002-01-01

    This study applies a new quantitative proteomics technology to the analysis of the function of the Myc oncoprotein in mammalian cells. Employing isotope-coded affinity tag (ICATTM) reagent labeling and tandem mass spectrometry, the global pattern of protein expression in rat myc-null cells was compared with that of myc-plus cells (myc-null cells in which myc has been introduced) to generate a differential protein expression catalog. Expression differences among many functionally related prote...

  14. Geometric nonlinear functional analysis volume 1

    CERN Document Server

    Benyamini, Yoav

    1999-01-01

    The book presents a systematic and unified study of geometric nonlinear functional analysis. This area has its classical roots in the beginning of the twentieth century and is now a very active research area, having close connections to geometric measure theory, probability, classical analysis, combinatorics, and Banach space theory. The main theme of the book is the study of uniformly continuous and Lipschitz functions between Banach spaces (e.g., differentiability, stability, approximation, existence of extensions, fixed points, etc.). This study leads naturally also to the classification of

  15. Functional Data Analysis in Electronic Commerce Research

    OpenAIRE

    Jank, Wolfgang; Shmueli, Galit

    2006-01-01

    This paper describes opportunities and challenges of using functional data analysis (FDA) for the exploration and analysis of data originating from electronic commerce (eCommerce). We discuss the special data structures that arise in the online environment and why FDA is a natural approach for representing and analyzing such data. The paper reviews several FDA methods and motivates their usefulness in eCommerce research by providing a glimpse into new domain insights that they allow. We argue...

  16. Theoretical Analysis of Polarized Structure Functions

    CERN Document Server

    Altarelli, Guido; Forte, Stefano; Ridolfi, G

    1998-01-01

    We review the analysis of polarized structure function data using perturbative QCD at next-to-leading order. We use the most recent experimental data to obtain updated results for polarized parton distributions, first moments and the strong coupling. We also discuss several theoretical issues involved in this analysis and in the interpretation of its results. Finally, we compare our results with other similar analyses in the recent literature.

  17. A Complexity Analysis of Functional Interpretations

    DEFF Research Database (Denmark)

    Hernest, Mircea-Dan; Kohlenbach, Ulrich

    2003-01-01

    We give a quantitative analysis of G ̈odel’s functional interpretation and its monotone variant. The two have been used for the extraction of programs and numerical bounds as well as for conservation results. They apply both to (semi-)intuitionistic as well as (combined with negative translation...

  18. Functional data analysis of sleeping energy expenditure

    Science.gov (United States)

    Adequate sleep is crucial during childhood for metabolic health, and physical and cognitive development. Inadequate sleep can disrupt metabolic homeostasis and alter sleeping energy expenditure (SEE). Functional data analysis methods were applied to SEE data to elucidate the population structure of ...

  19. Functional Analysis and Treatment of Severe Pica.

    Science.gov (United States)

    Mace, F. Charles; Knight, David

    1986-01-01

    A two-phase functional analysis of a profoundly retarded 19-year-old male's pica behavior resulted in an effective staff-implemented treatment consisting of limited staff-client interaction and removal of a protective helmet which had previously been prescribed to help control pica. (Author/JW)

  20. Structural and functional analysis of rice genome

    Indian Academy of Sciences (India)

    Home; Journals; Journal of Genetics; Volume 83; Issue 1. Structural and functional analysis of rice genome ... Abstract. Rice is an excellent system for plant genomics as it represents a modest size genome of 430 Mb. It feeds more than half the population of the world. Draft sequences of the rice genome, derived by ...

  1. Pineal function : Impact of microarray analysis

    NARCIS (Netherlands)

    Klein, David C.; Bailey, Michael J.; Carter, David A.; Kim, Jong-so; Shi, Qiong; Ho, Anthony K.; Chik, Constance L.; Gaildrat, Pascaline; Morin, Fabrice; Ganguly, Surajit; Rath, Martin F.; Moller, Morten; Sugden, David; Rangel, Zoila G.; Munson, Peter J.; Weller, Joan L.; Coon, Steven L.

    2010-01-01

    Microarray analysis has provided a new understanding of pineal function by identifying genes that are highly expressed in this tissue relative to other tissues and also by identifying over 600 genes that are expressed on a 24-h schedule. This effort has highlighted surprising similarity to the

  2. Functional Analysis-Spectral Theory1

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 6; Issue 4. Functional Analysis - Spectral Theory1. Cherian Varughese. Book Review Volume 6 Issue 4 April 2001 pp 91-92 ... Author Affiliations. Cherian Varughese1. Indian Statistical Institute, 8th Mile, Mysore Road, Bangalore 560 059, India.

  3. First Meeting in Topology and Functional Analysis

    CERN Document Server

    López-Pellicer, Manuel

    2014-01-01

    Descriptive topology and functional analysis, with extensive material demonstrating new connections between them, are the subject of the first section of this work. Applications to spaces of continuous functions, topological Abelian groups, linear topological equivalence and to the separable quotient problem are included and are presented as open problems. The second section is devoted to Banach spaces, Banach algebras and operator theory. Each chapter presents a lot of worthwhile and important recent theorems with an abstract discussing the material in the chapter. Each chapter can almost be seen as a survey covering a particular area.

  4. Free Vibration Analysis of Functionally Graded Beams

    OpenAIRE

    Khalane Sanjay Anandrao; R. K. Gupta; P. Ramachandran; G. Venkateswara Rao

    2012-01-01

    Free vibration analysis of functionally graded beams is carried out for various classical boundary conditions. Two separate finite element formulations, one based on Euler-Bernoulli beam theory and other based on Timoshenko beam theory are developed. Principle of virtual work is used to obtain the finite element system of equations. Numerical results are provided to demonstrate the effect of transverse shear on the natural frequencies and mode shapes for different length-to-thickness ratios a...

  5. Industrial entrepreneurial network: Structural and functional analysis

    Science.gov (United States)

    Medvedeva, M. A.; Davletbaev, R. H.; Berg, D. B.; Nazarova, J. J.; Parusheva, S. S.

    2016-12-01

    Structure and functioning of two model industrial entrepreneurial networks are investigated in the present paper. One of these networks is forming when implementing an integrated project and consists of eight agents, which interact with each other and external environment. The other one is obtained from the municipal economy and is based on the set of the 12 real business entities. Analysis of the networks is carried out on the basis of the matrix of mutual payments aggregated over the certain time period. The matrix is created by the methods of experimental economics. Social Network Analysis (SNA) methods and instruments were used in the present research. The set of basic structural characteristics was investigated: set of quantitative parameters such as density, diameter, clustering coefficient, different kinds of centrality, and etc. They were compared with the random Bernoulli graphs of the corresponding size and density. Discovered variations of random and entrepreneurial networks structure are explained by the peculiarities of agents functioning in production network. Separately, were identified the closed exchange circuits (cyclically closed contours of graph) forming an autopoietic (self-replicating) network pattern. The purpose of the functional analysis was to identify the contribution of the autopoietic network pattern in its gross product. It was found that the magnitude of this contribution is more than 20%. Such value allows using of the complementary currency in order to stimulate economic activity of network agents.

  6. Decay of coherent acoustic phonons generated by femtosecond pulsed optical excitation and injected in a Wannier-Stark superlattice (Conference Presentation)

    Science.gov (United States)

    Kent, Anthony J.; Poyser, Caroline L.; Akimov, Andrey V.; York, William; Henini, Mohamed; Campion, Richard P.

    2017-02-01

    In the past decade, sound amplification by the stimulated emission of (acoustic phonon) radiation (saser) devices for generating coherent terahertz (THz) acoustic waves have been demonstrated [1 - 3]. The devices exploit the electron-phonon interactions in periodic semiconductor nanostructures known as superlattices (SLs) to amplify acoustic phonons. In addition, the particular acoustic properties of SLs can be exploited to make mirrors and cavities for THz phonons. Thus SLs can provide the two essential elements of a saser: the acoustic gain medium and the acoustic cavity. In this presentation I will describe experimental studies of the THz phonon dynamics in a weakly-coupled GaAs/AlAs saser SL, which is DC electrically biased into the Wannier-Stark regime. Picoseconds-duration pulses of coherent THz acoustic phonons were generated using pump light pulses from a femtosecond laser and injected into the SL device. These phonon pulses seeded the saser cavity modes at about 220 and 440 GHz, which were amplified within the device. The phonons were detected using two methods: reflection of femtosecond probe light pulses, in a conventional pump-probe arrangement, and through the transient electrical response of the device itself. When the DC bias conditions for saser were achieved in the device, the amplitude and lifetime of the seeded modes were both increased, analogous to the threshold and spectral line narrowing effects seen in laser devices. [1] R P Beardsley et al., Phys. Rev. Lett. 104, 085501 (2010). [2] W Maryam et al., Nature Communications 4:2184 (2013). [3] K Shinokita et al., Phys. Rev. Lett. 116, 075504 (2016).

  7. Semen analysis and sperm function testing.

    Science.gov (United States)

    Franken, Daniel R; Oehninger, Sergio

    2012-01-01

    Despite controversy regarding the clinical value of semen analysis, male fertility investigation still relies on a standardized analysis of the semen parameters. This is especially true for infertility clinics in both developing and developed countries. Other optional tests or sophisticated technologies have not been widely applied. The current review addresses important changes in the analysis of semen as described in the new World Health Organization (WHO) manual for semen analysis. The most important change in the manual is the use of evidence-based publications as references to determine cutoff values for normality. Apart from the above mentioned changes, the initial evaluation and handling methods remain, in most instances, the same as in previous editions. Furthermore, the review evaluates the importance of quality control in andrology with emphasis on the evaluation of sperm morphology. WHO sperm morphology training programmes for Sub-Saharan countries were initiated at Tygerberg Hospital in 1995. The external quality control programme has ensured that the majority of participants have maintained their morphological reading skills acquired during initial training. This review reports on current sperm functional tests, such as the induced acrosome reaction, and sperm-zona pellucida binding assays, as well as the impact of sperm quality in terms of DNA integrity, and the relationship of sperm function tests to sperm morphology.

  8. Quantitative proteomic analysis of Myc oncoprotein function.

    Science.gov (United States)

    Shiio, Yuzuru; Donohoe, Sam; Yi, Eugene C; Goodlett, David R; Aebersold, Ruedi; Eisenman, Robert N

    2002-10-01

    This study applies a new quantitative proteomics technology to the analysis of the function of the Myc oncoprotein in mammalian cells. Employing isotope-coded affinity tag (ICAT) reagent labeling and tandem mass spectrometry, the global pattern of protein expression in rat myc-null cells was compared with that of myc-plus cells (myc-null cells in which myc has been introduced) to generate a differential protein expression catalog. Expression differences among many functionally related proteins were identified, including reduction of proteases, induction of protein synthesis pathways and upregulation of anabolic enzymes in myc-plus cells, which are predicted to lead to increased cell mass (cell growth). In addition, reduction in the levels of adhesion molecules, actin network proteins and Rho pathway proteins were observed in myc-plus cells, leading to reduced focal adhesions and actin stress fibers as well as altered morphology. These effects are dependent on the highly conserved Myc Box II region. Our results reveal a novel cytoskeletal function for Myc and indicate the feasibility of quantitative whole-proteome analysis in mammalian cells.

  9. Imaging of brain function based on the analysis of functional ...

    African Journals Online (AJOL)

    Conclusion: Acupuncture at LR3 mainly specifically activated the brain functional network that participates in visual function, associative function, and emotion cognition, which are similar to the features on LR3 in tradition Chinese medicine. These brain areas constituted a neural network structure with specific functions that ...

  10. Functional Analysis of Arabidopsis Sucrose Transporters

    Energy Technology Data Exchange (ETDEWEB)

    John M. Ward

    2009-03-31

    Sucrose is the main photosynthetic product that is transported in the vasculature of plants. The long-distance transport of carbohydrates is required to support the growth and development of net-importing (sink) tissues such as fruit, seeds and roots. This project is focused on understanding the transport mechanism sucrose transporters (SUTs). These are proton-coupled sucrose uptake transporters (membrane proteins) that are required for transport of sucrose in the vasculature and uptake into sink tissues. The accomplishments of this project included: 1) the first analysis of substrate specificity for any SUT. This was accomplished using electrophysiology to analyze AtSUC2, a sucrose transporter from companion cells in Arabidopsis. 2) the first analysis of the transport activity for a monocot SUT. The transport kinetics and substrate specificity of HvSUT1 from barley were studied. 3) the first analysis of a sucrose transporter from sugarcane. and 4) the first analysis of transport activity of a sugar alcohol transporter homolog from plants, AtPLT5. During this period four primary research papers, funded directly by the project, were published in refereed journals. The characterization of several sucrose transporters was essential for the current effort in the analysis of structure/function for this gene family. In particular, the demonstration of strong differences in substrate specificity between type I and II SUTs was important to identify targets for site-directed mutagenesis.

  11. Functional analysis and the Feynman operator calculus

    CERN Document Server

    Gill, Tepper L

    2016-01-01

    This book provides the mathematical foundations for Feynman's operator calculus and for the Feynman path integral formulation of quantum mechanics as a natural extension of analysis and functional analysis to the infinite-dimensional setting. In one application, the results are used to prove the last two remaining conjectures of Freeman Dyson for quantum electrodynamics. In another application, the results are used to unify methods and weaken domain requirements for non-autonomous evolution equations. Other applications include a general theory of Lebesgue measure on Banach spaces with a Schauder basis and a new approach to the structure theory of operators on uniformly convex Banach spaces. This book is intended for advanced graduate students and researchers.

  12. Biosignals Analysis for Kidney Function Effect Analysis of Fennel Aromatherapy

    Science.gov (United States)

    Kim, Bong-Hyun; Cho, Dong-Uk; Seo, Ssang-Hee

    2015-01-01

    Human effort in order to enjoy a healthy life is diverse. IT technology to these analyzes, the results of development efforts, it has been applied. Therefore, I use the care and maintenance diagnostic health management and prevention than treatment. In particular, the aromatherapy treatment easy to use without the side effects there is no irritation, are widely used in modern society. In this paper, we measured the aroma effect by applying a biosignal analysis techniques; an experiment was performed to analyze. In particular, we design methods and processes of research based on the theory aroma that affect renal function. Therefore, in this paper, measuring the biosignals and after fennel aromatherapy treatment prior to the enforcement of the mutual comparison, through the analysis, studies were carried out to analyze the effect of fennel aromatherapy therapy on kidney function. PMID:25977696

  13. Problems in real and functional analysis

    CERN Document Server

    Torchinsky, Alberto

    2015-01-01

    It is generally believed that solving problems is the most important part of the learning process in mathematics because it forces students to truly understand the definitions, comb through the theorems and proofs, and think at length about the mathematics. The purpose of this book is to complement the existing literature in introductory real and functional analysis at the graduate level with a variety of conceptual problems (1,457 in total), ranging from easily accessible to thought provoking, mixing the practical and the theoretical aspects of the subject. Problems are grouped into ten chapters covering the main topics usually taught in courses on real and functional analysis. Each of these chapters opens with a brief reader's guide stating the needed definitions and basic results in the area and closes with a short description of the problems. The Problem chapters are accompanied by Solution chapters, which include solutions to two-thirds of the problems. Students can expect the solutions to be written in ...

  14. Introduction to measure theory and functional analysis

    CERN Document Server

    Cannarsa, Piermarco

    2015-01-01

    This book introduces readers to theories that play a crucial role in modern mathematics, such as integration and functional analysis, employing a unifying approach that views these two subjects as being deeply intertwined. This feature is particularly evident in the broad range of problems examined, the solutions of which are often supported by generous hints. If the material is split into two courses, it can be supplemented by additional topics from the third part of the book, such as functions of bounded variation, absolutely continuous functions, and signed measures. This textbook addresses the needs of graduate students in mathematics, who will find the basic material they will need in their future careers, as well as those of researchers, who will appreciate the self-contained exposition which requires no other preliminaries than basic calculus and linear algebra.

  15. Functional data analysis of generalized regression quantiles

    KAUST Repository

    Guo, Mengmeng

    2013-11-05

    Generalized regression quantiles, including the conditional quantiles and expectiles as special cases, are useful alternatives to the conditional means for characterizing a conditional distribution, especially when the interest lies in the tails. We develop a functional data analysis approach to jointly estimate a family of generalized regression quantiles. Our approach assumes that the generalized regression quantiles share some common features that can be summarized by a small number of principal component functions. The principal component functions are modeled as splines and are estimated by minimizing a penalized asymmetric loss measure. An iterative least asymmetrically weighted squares algorithm is developed for computation. While separate estimation of individual generalized regression quantiles usually suffers from large variability due to lack of sufficient data, by borrowing strength across data sets, our joint estimation approach significantly improves the estimation efficiency, which is demonstrated in a simulation study. The proposed method is applied to data from 159 weather stations in China to obtain the generalized quantile curves of the volatility of the temperature at these stations. © 2013 Springer Science+Business Media New York.

  16. Functional Analysis of the Primate Shoulder.

    Science.gov (United States)

    Preuschoft, Holger; Hohn, Bianca; Scherf, Heike; Schmidt, Manuela; Krause, Cornelia; Witzel, Ulrich

    2010-04-01

    Studies of the shoulder girdle are in most cases restricted to morphological comparisons and rarely aim at elucidating function in a strictly biomechanical sense. To fill this gap, we investigated the basic functional conditions that occur in the shoulder joint and shoulder girdle of primates by means of mechanics. Because most of nonhuman primate locomotion is essentially quadrupedal walking-although on very variable substrates-our analysis started with quadrupedal postures. We identified the mechanical situation at the beginning, middle, and end of the load-bearing stance phase by constructing force parallelograms in the shoulder joint and the scapulo-thoracal connection. The resulting postulates concerning muscle activities are in agreement with electromyographical data in the literature. We determined the magnitude and directions of the internal forces and explored mechanically optimal shapes of proximal humerus, scapula, and clavicula using the Finite Element Method. Next we considered mechanical functions other than quadrupedal walking, such as suspension and brachiation. Quadrupedal walking entails muscle activities and joint forces that require a long scapula, the cranial margin of which has about the same length as the axillary margin. Loading of the hand in positions above the head and suspensory behaviors lead to force flows along the axillary margin and so necessitate a scapula with an extended axillary and a shorter cranial margin. In all cases, the facies glenoidalis is nearly normal to the calculated joint forces. In anterior view, terrestrial monkeys chose a direction of the ground reaction force requiring (moderate) activity of the abductors of the shoulder joint, whereas more arboreal monkeys prefer postures that necessitate activity of the adductors of the forelimb even when walking along branches. The same adducting and retracting muscles are recruited in various forms of suspension. As a mechanical consequence, the scapula is in a more frontal

  17. Human milk metagenome: a functional capacity analysis

    Science.gov (United States)

    2013-01-01

    Background Human milk contains a diverse population of bacteria that likely influences colonization of the infant gastrointestinal tract. Recent studies, however, have been limited to characterization of this microbial community by 16S rRNA analysis. In the present study, a metagenomic approach using Illumina sequencing of a pooled milk sample (ten donors) was employed to determine the genera of bacteria and the types of bacterial open reading frames in human milk that may influence bacterial establishment and stability in this primal food matrix. The human milk metagenome was also compared to that of breast-fed and formula-fed infants’ feces (n = 5, each) and mothers’ feces (n = 3) at the phylum level and at a functional level using open reading frame abundance. Additionally, immune-modulatory bacterial-DNA motifs were also searched for within human milk. Results The bacterial community in human milk contained over 360 prokaryotic genera, with sequences aligning predominantly to the phyla of Proteobacteria (65%) and Firmicutes (34%), and the genera of Pseudomonas (61.1%), Staphylococcus (33.4%) and Streptococcus (0.5%). From assembled human milk-derived contigs, 30,128 open reading frames were annotated and assigned to functional categories. When compared to the metagenome of infants’ and mothers’ feces, the human milk metagenome was less diverse at the phylum level, and contained more open reading frames associated with nitrogen metabolism, membrane transport and stress response (P milk metagenome also contained a similar occurrence of immune-modulatory DNA motifs to that of infants’ and mothers’ fecal metagenomes. Conclusions Our results further expand the complexity of the human milk metagenome and enforce the benefits of human milk ingestion on the microbial colonization of the infant gut and immunity. Discovery of immune-modulatory motifs in the metagenome of human milk indicates more exhaustive analyses of the functionality of the human

  18. Correspondence between Traditional Models of Functional Analysis and a Functional Analysis of Manding Behavior

    Science.gov (United States)

    LaRue, Robert H.; Sloman, Kimberly N.; Weiss, Mary Jane; Delmolino, Lara; Hansford, Amy; Szalony, Jill; Madigan, Ryan; Lambright, Nathan M.

    2011-01-01

    Functional analysis procedures have been effectively used to determine the maintaining variables for challenging behavior and subsequently develop effective interventions. However, fear of evoking dangerous topographies of maladaptive behavior and concerns for reinforcing infrequent maladaptive behavior present challenges for people working in…

  19. Production function analysis of Cassava-based cropping systems in ...

    African Journals Online (AJOL)

    Production function analysis of Cassava-based cropping systems in River state, Nigeria. ... An analysis of production function of cassava-based cropping systems in Rivers State is the main focus of this paper. A total of 180 ... Multiple regression model was the main tool of data analysis where different functions were tried.

  20. Analysis of Discrete Mittag - Leffler Functions

    Directory of Open Access Journals (Sweden)

    N. Shobanadevi

    2015-03-01

    Full Text Available Discrete Mittag - Leffler functions play a major role in the development of the theory of discrete fractional calculus. In the present article, we analyze qualitative properties of discrete Mittag - Leffler functions and establish sufficient conditions for convergence, oscillation and summability of the infinite series associated with discrete Mittag - Leffler functions.

  1. Introducing Trimming and Function Ranking to SolidWorks based on Function Analysis

    NARCIS (Netherlands)

    Chechurin, L.S.; Wits, Wessel Willems; Bakker, Hans M.; Vaneker, Thomas H.J.

    2015-01-01

    TRIZ based Function Analysis models existing products based on functional interactions between product parts. Such a function model description is the ideal starting point for product innovation. Design engineers can apply (TRIZ) methods such as trimming and function ranking to this function model

  2. Introducing trimming and function ranking to Solid Works based on function analysis

    NARCIS (Netherlands)

    Chechurin, Leonid S.; Wits, Wessel Willems; Bakker, Hans M.; Cascini, G.; Vaneker, Thomas H.J.

    2011-01-01

    TRIZ based Function Analysis models existing products based on functional interactions between product parts. Such a function model description is the ideal starting point for product innovation. Design engineers can apply (TRIZ) methods such as trimming and function ranking to this function model

  3. Crystal field parameters with Wannier functions: application to Nd.sub.2./sub.Fe.sub.14./sub.B systems

    Czech Academy of Sciences Publication Activity Database

    Yoshioka, T.; Tsuchiura, H.; Novák, Pavel

    2015-01-01

    Roč. 19, Sup.3 (2015), S4-S8 ISSN 1432-8917 Institutional support: RVO:68378271 Keywords : crystal field parameters * Nd-Fe-B permanent magnet Subject RIV: BM - Solid Matter Physics ; Magnet ism Impact factor: 0.830, year: 2014

  4. Structurally-informed Bayesian functional connectivity analysis

    NARCIS (Netherlands)

    Hinne, M.; Ambrogioni, L.; Janssen, R.J.; Heskes, T.M.; Gerven, M.A.J. van

    2014-01-01

    Functional connectivity refers to covarying activity between spatially segregated brain regions and can be studied by measuring correlation between functional magnetic resonance imaging (fMRI) time series. These correlations can be caused either by direct communication via active axonal pathways or

  5. A Didactic Analysis of Functional Queues

    Science.gov (United States)

    Rinderknecht, Christian

    2011-01-01

    When first introduced to the analysis of algorithms, students are taught how to assess the best and worst cases, whereas the mean and amortized costs are considered advanced topics, usually saved for graduates. When presenting the latter, aggregate analysis is explained first because it is the most intuitive kind of amortized analysis, often…

  6. General Green's functions for SAW device analysis.

    Science.gov (United States)

    Qiao, D; Liu, W; Smith, P M

    1999-01-01

    The traditional Green's function has been widely used to analyze surface acoustic wave (SAW) devices for many years because of its physical basis and its ability to model many propagating modes. Simplifications are, however, introduced in the derivation of the traditional Green's function that cause it to ignore some important effects, such as mass loading caused by surface electrodes. Recently, a generalized Green's function was introduced that is able to include mechanical loading effects. Based on previous work by E.L. Adler (1994) and R.C. Peach (1995), we use concise matrix notation to deduce the generalized Green's functions that describe the effects of surface stresses and electrical displacement on the three mechanical displacement components and on the electrical potential. Effective permittivities of 15 materials/cuts and the 16-element Green's functions for two materials are presented.

  7. New Mathematical Functions for Vacuum System Analysis

    Science.gov (United States)

    Woronowicz, Michael S.

    2017-01-01

    A new bivariate function has been found that provides solutions of integrals having the form u (sup minus eta) e (sup u) du which arise when developing predictions for the behavior of pressure within a rigid volume under high vacuum conditions in the presence of venting as well as sources characterized by power law transient decay over the range [0,1] for eta and for u greater than or equal to 0. A few properties of the new function are explored in this work. For instance the eta equals 1/2 case reproduces the Dawson function. In addition, a slight variation of the solution technique reproduces the exponential integral for eta equals 1. The technique used to generate these functions leads to an approach for solving a more general class of nonlinear ordinary differential equations, with the potential for identifying other new functions that solve other integrals.

  8. Trial-Based Functional Analysis and Functional Communication Training in an Early Childhood Setting

    Science.gov (United States)

    Lambert, Joseph M.; Bloom, Sarah E.; Irvin, Jennifer

    2012-01-01

    Problem behavior is common in early childhood special education classrooms. Functional communication training (FCT; Carr & Durand, 1985) may reduce problem behavior but requires identification of its function. The trial-based functional analysis (FA) is a method that can be used to identify problem behavior function in schools. We conducted…

  9. Descriptive Topology in Selected Topics of Functional Analysis

    CERN Document Server

    Kakol, J; Pellicer, Manuel Lopez

    2011-01-01

    "Descriptive Topology in Selected Topics of Functional Analysis" is a collection of recent developments in the field of descriptive topology, specifically focused on the classes of infinite-dimensional topological vector spaces that appear in functional analysis. Such spaces include Frechet spaces, (LF)-spaces and their duals, and the space of continuous real-valued functions C(X) on a completely regular Hausdorff space X, to name a few. These vector spaces appear in functional analysis in distribution theory, differential equations, complex analysis, and various other analytical set

  10. Analysis of Tsallis' classical partition function's poles

    Science.gov (United States)

    Plastino, A.; Rocca, M. C.

    2017-12-01

    When one integrates the q-exponential function of Tsallis' so as to get the partition function Z, a gamma function inevitably emerges. Consequently, poles arise. We investigate here the thermodynamic significance of these poles in the case of n classical harmonic oscillators (HO). Given that this is an exceedingly well known system, any new feature that may arise can safely be attributed to the poles' effect. We appeal to the mathematical tools used in Plastino et al. (2016) and Plastino and Rocca (2017), and obtain both bound and unbound states. In the first case, we are then faced with a classical Einstein crystal. We also detect what might be interpreted as pseudo gravitational effects.

  11. Asymptotic analysis for functional stochastic differential equations

    CERN Document Server

    Bao, Jianhai; Yuan, Chenggui

    2016-01-01

    This brief treats dynamical systems that involve delays and random disturbances. The study is motivated by a wide variety of systems in real life in which random noise has to be taken into consideration and the effect of delays cannot be ignored. Concentrating on such systems that are described by functional stochastic differential equations, this work focuses on the study of large time behavior, in particular, ergodicity. This brief is written for probabilists, applied mathematicians, engineers, and scientists who need to use delay systems and functional stochastic differential equations in their work. Selected topics from the brief can also be used in a graduate level topics course in probability and stochastic processes.

  12. Differential analysis of matrix convex functions

    DEFF Research Database (Denmark)

    Hansen, Frank; Tomiyama, Jun

    2007-01-01

    We analyze matrix convex functions of a fixed order defined in a real interval by differential methods as opposed to the characterization in terms of divided differences given by Kraus [F. Kraus, Über konvekse Matrixfunktionen, Math. Z. 41 (1936) 18-42]. We obtain for each order conditions for ma...

  13. Density functional and neural network analysis

    DEFF Research Database (Denmark)

    Jalkanen, K. J.; Suhai, S.; Bohr, Henrik

    1997-01-01

    Density functional theory (DFT) calculations have been carried out for hydrated L-alanine, L-alanyl-L-alanine and N-acetyl L-alanine N'-methylamide and examined with respect to the effect of water on the structure, the vibrational frequencies, vibrational absorption (VA) and vibrational circular...

  14. An exploration of function analysis and function allocation in the commercial flight domain

    Science.gov (United States)

    Mcguire, James C.; Zich, John A.; Goins, Richard T.; Erickson, Jeffery B.; Dwyer, John P.; Cody, William J.; Rouse, William B.

    1991-01-01

    The applicability is explored of functional analysis methods to support cockpit design. Specifically, alternative techniques are studied for ensuring an effective division of responsibility between the flight crew and automation. A functional decomposition is performed of the commercial flight domain to provide the information necessary to support allocation decisions and demonstrate methodology for allocating functions to flight crew or to automation. The function analysis employed 'bottom up' and 'top down' analyses and demonstrated the comparability of identified functions, using the 'lift off' segment of the 'take off' phase as a test case. The normal flight mission and selected contingencies were addressed. Two alternative methods for using the functional description in the allocation of functions between man and machine were investigated. The two methods were compared in order to ascertain their relative strengths and weaknesses. Finally, conclusions were drawn regarding the practical utility of function analysis methods.

  15. Discriminant Function Analysis as a Proof for Sexual Dimorphism ...

    African Journals Online (AJOL)

    Background: Forensic scientists study human skeleton in legal setting. Discriminant function analysis has become important in forensic anthropology. The aim of this study was to determine the sex of adolescent Yoruba ethnic group of Nigeria using iscriminant function analysis. Methodology: One thousand (500 males and ...

  16. Multiresolution analysis of functions on directed networks

    Science.gov (United States)

    Sevi, Harry; Rilling, Gabriel; Borgnat, Pierre

    2017-08-01

    We introduce a novel design for analyzing and approximating functions defined on the vertices of a directed graph Γ in a multi-scale fashion. The starting point of our construction is the setting-up of a frequency notion through the study of the Dirichlet energy of random walk operator's eigenfunctions. By this alluring frequency interpretation, the set of random walk's eigenfunctions is considered as the Fourier basis for functions over directed graphs. We are thus able to construct a multi-scale frame based on the bi-orthogonal basis of the random walk on directed graphs. This multi-resolution frame paves thus the way to a generalization of the diffusion wavelet framework to the directed scope.

  17. Functional Foods Baseline and Requirements Analysis

    Science.gov (United States)

    Cooper, M. R.; Bermudez-Aguirre, L. D.; Douglas, G.

    2015-01-01

    Current spaceflight foods were evaluated to determine if their nutrient profile supports positioning as a functional food and if the stability of the bioactive compound within the food matrix over an extended shelf-life correlated with the expected storage duration during the mission. Specifically, the research aims were: Aim A. To determine the amount of each nutrient in representative spaceflight foods immediately after processing and at predetermined storage time to establish the current nutritional state. Aim B. To identify the requirements to develop foods that stabilize these nutrients such that required concentrations are maintained in the space food system throughout long duration missions (up to five years). Aim C. To coordinate collaborations with health and performance groups that may require functional foods as a countermeasure.

  18. Analysis of Selected Functional Characteristics of Wetlands.

    Science.gov (United States)

    1979-02-01

    functioning in this capa- *1 city . Assessing the value of wetlands for water quality improvements also de- pends on one’s individual bias or perspective... sponges ; rather they release excess moisture during wet periods and deplete supply during dry months. *R. R. Bay, (1967) in a study on forested peat...1, Water Quality. Indeed, the research re- quirements for shoreline protection, stormwater storage, and groundwater re- charge are all similar and can

  19. Continuous nowhere differentiable functions the monsters of analysis

    CERN Document Server

    Jarnicki, Marek

    2015-01-01

    This book covers the construction, analysis, and theory of continuous nowhere differentiable functions, comprehensively and accessibly. After illuminating the significance of the subject through an overview of its history, the reader is introduced to the sophisticated toolkit of ideas and tricks used to study the explicit continuous nowhere differentiable functions of Weierstrass, Takagi–van der Waerden, Bolzano, and others. Modern tools of functional analysis, measure theory, and Fourier analysis are applied to examine the generic nature of continuous nowhere differentiable functions, as well as linear structures within the (nonlinear) space of continuous nowhere differentiable functions. To round out the presentation, advanced techniques from several areas of mathematics are brought together to give a state-of-the-art analysis of Riemann’s continuous, and purportedly nowhere differentiable, function. For the reader’s benefit, claims requiring elaboration, and open problems, are clearly indicated. An a...

  20. The power of multiplexed functional analysis of genetic variants.

    Science.gov (United States)

    Gasperini, Molly; Starita, Lea; Shendure, Jay

    2016-10-01

    New technologies have recently enabled saturation mutagenesis and functional analysis of nearly all possible variants of regulatory elements or proteins of interest in single experiments. Here we discuss the past, present, and future of such multiplexed (functional) assays for variant effects (MAVEs). MAVEs provide detailed insight into sequence-function relationships, and they may prove critical for the prospective clinical interpretation of genetic variants.

  1. Classwide Functional Analysis and Treatment of Preschoolers' Disruptive Behavior

    Science.gov (United States)

    Poole, Veena Y.; Dufrene, Brad A.; Sterling, Heather E.; Tingstrom, Daniel H.; Hardy, Christina M.

    2012-01-01

    Relatively few functional assessment and intervention studies have been conducted in preschool classrooms with children of typical development who engage in high incidence problem behaviors. Moreover, limited studies have used functional assessment procedures with the class as the unit of analysis. This study included functional analyses and a…

  2. [A functional analysis of healthcare auditors' skills in Venezuela, 2008].

    Science.gov (United States)

    Chirinos-Muñoz, Mónica S

    2010-10-01

    Using functional analysis for identifying the basic, working, specific and generic skills and values which a health service auditor must have. Implementing the functional analysis technique with 10 experts, identifying specific, basic, generic skills and values by means of deductive logic. A functional map was obtained which started by establishing a key purpose based on improving healthcare and service quality from which three key functions emerged. The main functions and skills' units were then broken down into the competitive elements defining what a health service auditor is able to do. This functional map (following functional analysis methodology) shows in detail the simple and complex tasks which a healthcare auditor should apply in the workplace, adopting a forward management approach for improving healthcare and health service quality. This methodology, expressing logical-deductive awareness raising, provides expert consensual information validating each element regarding overall skills.

  3. Consolidity analysis for fully fuzzy functions, matrices, probability and statistics

    OpenAIRE

    Walaa Ibrahim Gabr

    2015-01-01

    The paper presents a comprehensive review of the know-how for developing the systems consolidity theory for modeling, analysis, optimization and design in fully fuzzy environment. The solving of systems consolidity theory included its development for handling new functions of different dimensionalities, fuzzy analytic geometry, fuzzy vector analysis, functions of fuzzy complex variables, ordinary differentiation of fuzzy functions and partial fraction of fuzzy polynomials. On the other hand, ...

  4. Expression and functional analysis of polygalacturonase gene ...

    African Journals Online (AJOL)

    DR TONUKARI

    2012-02-02

    Feb 2, 2012 ... RNA excluded any DNA contamination. Western blot analysis of Pcipg5 expression in diseased pepper leaves. We used antibody developed against recombinant protein. PCIPG5 to detect the crude proteins extracted from diseased leaves at one day intervals from 1 to 7dpi. A special protein band (40 KDa) ...

  5. False Positive Functional Analysis Results as a Contributor of Treatment Failure during Functional Communication Training

    Science.gov (United States)

    Mann, Amanda J.; Mueller, Michael M.

    2009-01-01

    Research has shown that functional analysis results are beneficial for treatment selection because they identify reinforcers for severe behavior that can then be used to reinforce replacement behaviors either differentially or noncontingently. Theoretically then, if a reinforcer is identified in a functional analysis erroneously, a well researched…

  6. Functional Analysis of P4-ATPases

    DEFF Research Database (Denmark)

    Theorin, Lisa

    emerged as responsible for the inward transport of lipids. This inward transport is responsible for maintenance of the lipid asymmetry, which in turn has been associated with essential cellular processes. Even though these pumps are essential for eukaryotic life they are relatively uncharacterized. Yeast...... is specific for phosphatidylserine and that binding of the lipid to the substrate binding site requires a unique spatial configuration of the lipid head group. Detailed information on the substrate requirements lead the way towards the full function and transport pathway of lipid flippases in plants. Recent...

  7. A Comparison of Functional Behavioral Assessment and Functional Analysis Methodology among Students with Mild Disabilities

    Science.gov (United States)

    Lewis, Timothy J.; Mitchell, Barbara S.; Harvey, Kristin; Green, Ambra; McKenzie, Jennifer

    2015-01-01

    Functional behavioral assessment (FBA) and functional analyses (FA) are grounded in the applied behavior analysis principle that posits problem behavior is functionally related to the environment in which it occurs and is maintained by either providing access to reinforcing outcomes or allowing the individual to avoid or escape that which they…

  8. Functional imaging of auditory scene analysis.

    Science.gov (United States)

    Gutschalk, Alexander; Dykstra, Andrew R

    2014-01-01

    Our auditory system is constantly faced with the task of decomposing the complex mixture of sound arriving at the ears into perceptually independent streams constituting accurate representations of individual sound sources. This decomposition, termed auditory scene analysis, is critical for both survival and communication, and is thought to underlie both speech and music perception. The neural underpinnings of auditory scene analysis have been studied utilizing invasive experiments with animal models as well as non-invasive (MEG, EEG, and fMRI) and invasive (intracranial EEG) studies conducted with human listeners. The present article reviews human neurophysiological research investigating the neural basis of auditory scene analysis, with emphasis on two classical paradigms termed streaming and informational masking. Other paradigms - such as the continuity illusion, mistuned harmonics, and multi-speaker environments - are briefly addressed thereafter. We conclude by discussing the emerging evidence for the role of auditory cortex in remapping incoming acoustic signals into a perceptual representation of auditory streams, which are then available for selective attention and further conscious processing. This article is part of a Special Issue entitled Human Auditory Neuroimaging. Copyright © 2013 Elsevier B.V. All rights reserved.

  9. Function analysis for waste information systems

    Energy Technology Data Exchange (ETDEWEB)

    Sexton, J.L.; Neal, C.T.; Heath, T.C.; Starling, C.D.

    1996-04-01

    This study has a two-fold purpose. It seeks to identify the functional requirements of a waste tracking information system and to find feasible alternatives for meeting those requirements on the Oak Ridge Reservation (ORR) and the Portsmouth (PORTS) and Paducah (PGDP) facilities; identify options that offer potential cost savings to the US government and also show opportunities for improved efficiency and effectiveness in managing waste information; and, finally, to recommend a practical course of action that can be immediately initiated. In addition to identifying relevant requirements, it also identifies any existing requirements that are currently not being completely met. Another aim of this study is to carry out preliminary benchmarking by contacting representative companies about their strategic directions in waste information. The information obtained from representatives of these organizations is contained in an appendix to the document; a full benchmarking effort, however, is beyond the intended scope of this study.

  10. Bottom-up grammar analysis : a functional formulation

    NARCIS (Netherlands)

    Jeuring, J.T.; Swierstra, D.

    1994-01-01

    This paper discusses bottom-up grammar analysis problems such as te EMPTY problem and the FIRST problem. It defines a general class of bottom-up grammar analysis problems, and from this definition it derives a functional program for performing bottom-up grammar analysis. The derivation is purely

  11. Functional stoichiometric analysis of metabolic networks.

    Science.gov (United States)

    Urbanczik, R; Wagner, C

    2005-11-15

    An important tool in Systems Biology is the stoichiometric modeling of metabolic networks, where the stationary states of the network are described by a high-dimensional polyhedral cone, the so-called flux cone. Exhaustive descriptions of the metabolism can be obtained by computing the elementary vectors of this cone but, owing to a combinatorial explosion of the number of elementary vectors, this approach becomes computationally intractable for genome scale networks. Hence, we propose to instead focus on the conversion cone, a projection of the flux cone, which describes the interaction of the metabolism with its external chemical environment. We present a direct method for calculating the elementary vectors of this cone and, by studying the metabolism of Saccharomyces cerevisiae, we demonstrate that such an analysis is computationally feasible even for genome scale networks.

  12. Functional analysis of corn husk photosynthesis.

    Science.gov (United States)

    Pengelly, Jasper J L; Kwasny, Scott; Bala, Soumi; Evans, John R; Voznesenskaya, Elena V; Koteyeva, Nuria K; Edwards, Gerald E; Furbank, Robert T; von Caemmerer, Susanne

    2011-06-01

    The husk surrounding the ear of corn/maize (Zea mays) has widely spaced veins with a number of interveinal mesophyll (M) cells and has been described as operating a partial C(3) photosynthetic pathway, in contrast to its leaves, which use the C(4) photosynthetic pathway. Here, we characterized photosynthesis in maize husk and leaf by measuring combined gas exchange and carbon isotope discrimination, the oxygen dependence of the CO(2) compensation point, and photosynthetic enzyme activity and localization together with anatomy. The CO(2) assimilation rate in the husk was less than that in the leaves and did not saturate at high CO(2), indicating CO(2) diffusion limitations. However, maximal photosynthetic rates were similar between the leaf and husk when expressed on a chlorophyll basis. The CO(2) compensation points of the husk were high compared with the leaf but did not vary with oxygen concentration. This and the low carbon isotope discrimination measured concurrently with gas exchange in the husk and leaf suggested C(4)-like photosynthesis in the husk. However, both Rubisco activity and the ratio of phosphoenolpyruvate carboxylase to Rubisco activity were reduced in the husk. Immunolocalization studies showed that phosphoenolpyruvate carboxylase is specifically localized in the layer of M cells surrounding the bundle sheath cells, while Rubisco and glycine decarboxylase were enriched in bundle sheath cells but also present in M cells. We conclude that maize husk operates C(4) photosynthesis dispersed around the widely spaced veins (analogous to leaves) in a diffusion-limited manner due to low M surface area exposed to intercellular air space, with the functional role of Rubisco and glycine decarboxylase in distant M yet to be explained.

  13. Functional and comparative analysis of expressed sequences from ...

    African Journals Online (AJOL)

    Functional and comparative analysis of expressed sequences from Diuraphis noxia infested wheat obtained utilizing the conserved Nucleotide Binding Site. Lynelle Lacock, Chantal van Niekerk, Shilo Loots, Franco du Preez, Anna-Maria Botha ...

  14. Alternative Analysis of Classifications of Universal Managerial Functions

    Directory of Open Access Journals (Sweden)

    Chornii Heorhii M.

    2014-03-01

    Full Text Available The article is devoted to theoretical justification of classification of general managerial functions. Critical analysis of scientific works of eminent specialists in management gave a possibility to find out that classification of functions of the subject of management should be based on the objective cyclic change of the state of information by three stages: appearance of information, its concentration and transformation into a programme of specific actions. The article offers a classification model of the integrated managerial activity in social and mixed systems, which includes differentiation of managerial functions into three orders. Providing information, decision making and realisation of the decision are functions of the second order (basic in this model, while accounting, analysis, goal setting, planning, organisation, management and control – are, consequently, functions of the third order (derivatives. The article considers one specific example from management practice with the aim of verification of the author’s opinion regarding the processed classification of managerial functions.

  15. Analysis of Multiple Manding Topographies during Functional Communication Training

    Science.gov (United States)

    Harding, Jay W.; Wacker, David P.; Berg, Wendy K.; Winborn-Kemmerer, Lisa; Lee, John F.; Ibrahimovic, Muska

    2009-01-01

    We evaluated the effects of reinforcing multiple manding topographies during functional communication training (FCT) to decrease problem behavior for three preschool-age children. During Phase 1, a functional analysis identified conditions that maintained problem behavior for each child. During Phase 2, the children's parents taught them to…

  16. Functional Principal Components Analysis of Shanghai Stock Exchange 50 Index

    Directory of Open Access Journals (Sweden)

    Zhiliang Wang

    2014-01-01

    Full Text Available The main purpose of this paper is to explore the principle components of Shanghai stock exchange 50 index by means of functional principal component analysis (FPCA. Functional data analysis (FDA deals with random variables (or process with realizations in the smooth functional space. One of the most popular FDA techniques is functional principal component analysis, which was introduced for the statistical analysis of a set of financial time series from an explorative point of view. FPCA is the functional analogue of the well-known dimension reduction technique in the multivariate statistical analysis, searching for linear transformations of the random vector with the maximal variance. In this paper, we studied the monthly return volatility of Shanghai stock exchange 50 index (SSE50. Using FPCA to reduce dimension to a finite level, we extracted the most significant components of the data and some relevant statistical features of such related datasets. The calculated results show that regarding the samples as random functions is rational. Compared with the ordinary principle component analysis, FPCA can solve the problem of different dimensions in the samples. And FPCA is a convenient approach to extract the main variance factors.

  17. Analyzing coastal environments by means of functional data analysis

    Science.gov (United States)

    Sierra, Carlos; Flor-Blanco, Germán; Ordoñez, Celestino; Flor, Germán; Gallego, José R.

    2017-07-01

    Here we used Functional Data Analysis (FDA) to examine particle-size distributions (PSDs) in a beach/shallow marine sedimentary environment in Gijón Bay (NW Spain). The work involved both Functional Principal Components Analysis (FPCA) and Functional Cluster Analysis (FCA). The grainsize of the sand samples was characterized by means of laser dispersion spectroscopy. Within this framework, FPCA was used as a dimension reduction technique to explore and uncover patterns in grain-size frequency curves. This procedure proved useful to describe variability in the structure of the data set. Moreover, an alternative approach, FCA, was applied to identify clusters and to interpret their spatial distribution. Results obtained with this latter technique were compared with those obtained by means of two vector approaches that combine PCA with CA (Cluster Analysis). The first method, the point density function (PDF), was employed after adapting a log-normal distribution to each PSD and resuming each of the density functions by its mean, sorting, skewness and kurtosis. The second applied a centered-log-ratio (clr) to the original data. PCA was then applied to the transformed data, and finally CA to the retained principal component scores. The study revealed functional data analysis, specifically FPCA and FCA, as a suitable alternative with considerable advantages over traditional vector analysis techniques in sedimentary geology studies.

  18. Complex analysis a modern first course in function theory

    CERN Document Server

    Muir, Jerry R

    2015-01-01

    A thorough introduction to the theory of complex functions emphasizing the beauty, power, and counterintuitive nature of the subject Written with a reader-friendly approach, Complex Analysis: A Modern First Course in Function Theory features a self-contained, concise development of the fundamental principles of complex analysis. After laying groundwork on complex numbers and the calculus and geometric mapping properties of functions of a complex variable, the author uses power series as a unifying theme to define and study the many rich and occasionally surprising properties of analytic fun

  19. Function modeling: improved raster analysis through delayed reading and function raster datasets

    Science.gov (United States)

    John S. Hogland; Nathaniel M. Anderson; J .Greg Jones

    2013-01-01

    Raster modeling is an integral component of spatial analysis. However, conventional raster modeling techniques can require a substantial amount of processing time and storage space, often limiting the types of analyses that can be performed. To address this issue, we have developed Function Modeling. Function Modeling is a new modeling framework that streamlines the...

  20. A Temporal Extension to Traditional Empirical Orthogonal Function Analysis

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Hilger, Klaus Baggesen; Andersen, Ole Baltazar

    2002-01-01

    This paper describes the application of temporal maximum autocorrelation factor analysis to global monthly mean values of 1996-1997 sea surface temperature (SST) and sea surface height (SSH) data. This type of analysis can be considered as an extension of traditional empirical orthogonal function...

  1. Adelic analysis and functional analysis on the finite Adele ring

    Directory of Open Access Journals (Sweden)

    Ilwoo Cho

    2018-01-01

    Full Text Available In this paper, we study operator theory on the \\(*\\-algebra \\(\\mathcal{M}_{\\mathcal{P}}\\, consisting of all measurable functions on the finite Adele ring \\(A_{\\mathbb{Q}}\\, in extended free-probabilistic sense. Even though our \\(*\\-algebra \\(\\mathcal{M}_{\\mathcal{P}}\\ is commutative, our Adelic-analytic data and properties on \\(\\mathcal{M}_{\\mathcal{P}}\\ are understood as certain free-probabilistic results under enlarged sense of (noncommutative free probability theory (well-covering commutative cases. From our free-probabilistic model on \\(A_{\\mathbb{Q}}\\, we construct the suitable Hilbert-space representation, and study a \\(C^{*}\\-algebra \\(M_{\\mathcal{P}}\\ generated by \\(\\mathcal{M}_{\\mathcal{P}}\\ under representation. In particular, we focus on operator-theoretic properties of certain generating operators on \\(M_{\\mathcal{P}}\\.

  2. Assessment of table olive fermentation by functional data analysis.

    Science.gov (United States)

    Ruiz-Bellido, M A; Romero-Gil, V; García-García, P; Rodríguez-Gómez, F; Arroyo-López, F N; Garrido-Fernández, A

    2016-12-05

    For the first time, functional data analysis (FDA) was used to assess the effects of different treatments on Protection Denomination of Origin Aloreña de Málaga table olive fermentations, focusing on the evolution of yeast population. The analysis of fermentation by a conventional approach led to scarce information. However, the transformation of microbial (and also physicochemical) data into smooth curves allowed the application of a new battery of statistical tools for the analysis of fermentations (functional pointwise estimation of the averages and standard deviations, maximum, minimum, first and second derivatives, functional regression, and functional F and t-tests). FDA showed that all the treatments assayed led to similar trends in yeast population while changes in pH and titratable acidity profiles led to several significant differences. Therefore, FDA represents a promising and valuable tool for studying table olive fermentations and for food microbiology in general. Copyright © 2016 Elsevier B.V. All rights reserved.

  3. Linear functional analysis an application-oriented introduction

    CERN Document Server

    Alt, Hans Wilhelm

    2016-01-01

    This book gives an introduction to Linear Functional Analysis, a synthesis of algebra, topology, and analysis. In addition to the basic theory it explains operator theory, distributions, Sobolev spaces, and many other things. The text is self-contained and includes all proofs, as well as many exercises, most of them with solutions. Moreover, there are a number of appendices, for example on Lebesgue integration theory. A complete introduction to the subject, Linear Functional Analysis will be particularly useful to readers who want to quickly get to the key statements and who are interested in applications to differential equations.

  4. Bottom-up grammar analysis : a functional formulation

    OpenAIRE

    Jeuring, J.T.; Swierstra, D.

    1994-01-01

    This paper discusses bottom-up grammar analysis problems such as te EMPTY problem and the FIRST problem. It defines a general class of bottom-up grammar analysis problems, and from this definition it derives a functional program for performing bottom-up grammar analysis. The derivation is purely calculational, using theorems from lattice therory, the Bird-Meertens calculus, and laws for list-comprehensions. Sufficient conditions guaranteeing the existence of a solution emerge as a byproduct o...

  5. Accurate evaluation and analysis of functional genomics data and methods

    Science.gov (United States)

    Greene, Casey S.; Troyanskaya, Olga G.

    2016-01-01

    The development of technology capable of inexpensively performing large-scale measurements of biological systems has generated a wealth of data. Integrative analysis of these data holds the promise of uncovering gene function, regulation, and, in the longer run, understanding complex disease. However, their analysis has proved very challenging, as it is difficult to quickly and effectively assess the relevance and accuracy of these data for individual biological questions. Here, we identify biases that present challenges for the assessment of functional genomics data and methods. We then discuss evaluation methods that, taken together, begin to address these issues. We also argue that the funding of systematic data-driven experiments and of high-quality curation efforts will further improve evaluation metrics so that they more-accurately assess functional genomics data and methods. Such metrics will allow researchers in the field of functional genomics to continue to answer important biological questions in a data-driven manner. PMID:22268703

  6. Functional analysis of the COBRA-like family

    OpenAIRE

    Sorek, Nadav; Ryan, Andrew; Carroll, Andrew; Somerville, Chris

    2016-01-01

    The COBRA protein is found only in higher plants and algae, and has been implicated in cellulose synthesis, but its specific function remains unknown. To shed light on COBRA function we tested the ability of putative Arabidopsis COBRA orthologs to complement mutations in the COBRA gene. We expanded the previously published phylogenetic analysis and found that COBRA genes can be grouped into five clades. Representative COBRA genes from the different clades were expressed in a cobra mutant back...

  7. Landscape function analysis as a base of rural development strategies

    Directory of Open Access Journals (Sweden)

    Filepné Kovács Krisztina

    2017-11-01

    Full Text Available Research on ecosystem services and landscape functions are highly important in landscape ecology, landscape planning and open space design. The terms of ecosystem service and landscape function have been evolved parallel to each other in the scientific literature but have different focus. The term of landscape functions evolved from the scientific field of landscape ecology; it reflects the goods and services provided by regions, landscapes where the cultural, economic factors are important as well. As a framework assessment method with additional economic assessment, a landscape function analysis could be an additional tool of rural development, as it gives a complex analysis of multiple aspects, thus it is highly appropriate to explore, analyze the potentials, resources and limits of landscapes and land use systems. In the current research a landscape function analysis was compared with the rural development strategies in Hungarian micro-regions. We focused on the level of landscape functions and the objectives of the rural development strategies of the study areas. The local development strategies do not focus on territorial differences nor potentials evolving from natural, cultural resources or local constrains. The only exception is tourism development, where in some cases there is a holistic spatial approach which intends to develop the region as a whole.

  8. An introduction with medical applications to functional data analysis

    DEFF Research Database (Denmark)

    Sørensen, Helle; Goldsmith, Jeff; Sangalli, Laura M

    2013-01-01

    Functional data are data that can be represented by suitable functions, such as curves (potentially multi-dimensional) or surfaces. This paper gives an introduction to some basic but important techniques for the analysis of such data, and we apply the techniques to two datasets from biomedicine....... One dataset is about white matter structures in the brain in multiple sclerosis patients; the other dataset is about three-dimensional vascular geometries collected for the study of cerebral aneurysms. The techniques described are smoothing, alignment, principal component analysis, and regression....

  9. Towards tests of quark-hadron duality with functional analysis and spectral function data

    Science.gov (United States)

    Boito, Diogo; Caprini, Irinel

    2017-04-01

    The presence of terms that violate quark-hadron duality in the expansion of QCD Green's functions is a generally accepted fact. Recently, a new approach was proposed for the study of duality violations (DVs), which exploits the existence of a rigorous lower bound on the functional distance, measured in a certain norm, between a "true" correlator and its approximant calculated theoretically along a contour in the complex energy plane. In the present paper, we pursue the investigation of functional-analysis-based tests towards their application to real spectral function data. We derive a closed analytic expression for the minimal functional distance based on the general weighted L2 norm and discuss its relation with the distance measured in the L∞ norm. Using fake data sets obtained from a realistic toy model in which we allow for covariances inspired from the publicly available ALEPH spectral functions, we obtain, by Monte Carlo simulations, the statistical distribution of the strength parameter that measures the magnitude of the DV term added to the usual operator product expansion. The results show that, if the region with large errors near the end point of the spectrum in τ decays is excluded, the functional-analysis-based tests using either L2 or L∞ norms are able to detect, in a statistically significant way, the presence of DVs in realistic spectral function pseudodata.

  10. A Cognitive Engineering Analysis of the Vertical Navigation (VNAV) Function

    Science.gov (United States)

    Sherry, Lance; Feary, Michael; Polson, Peter; Mumaw, Randall; Palmer, Everett

    2001-01-01

    A cognitive engineering analysis of the Flight Management System (FMS) Vertical Navigation (VNAV) function has identified overloading of the VNAV button and overloading of the Flight Mode Annunciator (FMA) used by the VNAV function. These two types of overloading, resulting in modal input devices and ambiguous feedback, are well known sources of operator confusion, and explain, in part, the operational issues experienced by airline pilots using VNAV in descent and approach. A proposal to modify the existing VNAV design to eliminate the overloading is discussed. The proposed design improves pilot's situational awareness of the VNAV function, and potentially reduces the cost of software development and improves safety.

  11. Fractals and spectra related to fourier analysis and function spaces

    CERN Document Server

    Triebel, Hans

    1997-01-01

    Fractals and Spectra Hans Triebel This book deals with the symbiotic relationship between the theory of function spaces, fractal geometry, and spectral theory of (fractal) pseudodifferential operators as it has emerged quite recently. Atomic and quarkonial (subatomic) decompositions in scalar and vector valued function spaces on the euclidean n-space pave the way to study properties (compact embeddings, entropy numbers) of function spaces on and of fractals. On this basis, distributions of eigenvalues of fractal (pseudo)differential operators are investigated. Diverse versions of fractal drums are played. The book is directed to mathematicians interested in functional analysis, the theory of function spaces, fractal geometry, partial and pseudodifferential operators, and, in particular, in how these domains are interrelated. ------ It is worth mentioning that there is virtually no literature on this topic and hence the most of the presented material is published here the first time. - Zentralblatt MATH (…) ...

  12. Social Media’s Function in Organizations: A Functional Analysis Approach

    Directory of Open Access Journals (Sweden)

    Amy Reitz

    2012-12-01

    Full Text Available System theorists believe that organizations that function as an open system have a greater chance of survival than organizations that function as a closed system due to the exchange of inputs and outputs between the organization and its publics. Public relations researchers have proposed adopting a dialogic approach to public relations where interaction between the organization and its publics are mutual, which is the underpinning to an open systems approach. This paper posits that organizations can function within an open systems approach to public relations by employing social media. Adoption of a functional approach is a fruitful way to look at the social functions various social media serve in the system of organizations and their publics. Research has considered the gratifications publics receive from social media; however, limited research has considered what social media do for the organization-public relationship system. It has been argued that organizations also have psychological and social motivations; therefore, applying a functional analysis approach might be a good of way determining what functions social media serve in the organization-public relationship system. Four functions are proposed in which social media may serve the system: maintenance of organizational identity, opportunity to build relationships with publics, ability to control issues management, and the chance to promote social corporate responsibility. Understanding social media’s role in the system can help practitioners identify the functions that may contribute to an open systems approach to public relations and ultimately an organization’s survival.

  13. A Novel Synchronization-Based Approach for Functional Connectivity Analysis

    Directory of Open Access Journals (Sweden)

    Angela Lombardi

    2017-01-01

    Full Text Available Complex network analysis has become a gold standard to investigate functional connectivity in the human brain. Popular approaches for quantifying functional coupling between fMRI time series are linear zero-lag correlation methods; however, they might reveal only partial aspects of the functional links between brain areas. In this work, we propose a novel approach for assessing functional coupling between fMRI time series and constructing functional brain networks. A phase space framework is used to map couples of signals exploiting their cross recurrence plots (CRPs to compare the trajectories of the interacting systems. A synchronization metric is extracted from the CRP to assess the coupling behavior of the time series. Since the functional communities of a healthy population are expected to be highly consistent for the same task, we defined functional networks of task-related fMRI data of a cohort of healthy subjects and applied a modularity algorithm in order to determine the community structures of the networks. The within-group similarity of communities is evaluated to verify whether such new metric is robust enough against noise. The synchronization metric is also compared with Pearson’s correlation coefficient and the detected communities seem to better reflect the functional brain organization during the specific task.

  14. Functional Task Analysis. A Training Module. School Personnel Utilization.

    Science.gov (United States)

    DeBloois, Michael; Melton, Raymond G.

    The School Personnel Utilization Project developed a series of modules to assist school personnel in building the necessary skills for the development of organizational change strategies and collaborative, collegial educational problem solving capabilities. This specific module on functional task analysis will assist the user in monitoring and…

  15. Structural analysis and functional characteristics of greenhouses in ...

    African Journals Online (AJOL)

    This study was carried out to determine the structural analysis and functional characteristics of the greenhouses in the Mediterranean region where 87% of the greenhouse production area in Turkey is concentrated. Information about types, material and construction properties, placement and arrangement of greenhouses in ...

  16. Isolation and preliminary function analysis of a Na + /H + antiporter ...

    African Journals Online (AJOL)

    genome. Northern blot analysis showed negligible expression of the gene in roots, but expression was detected in stems and leaves. To test the function of ... plants from NCBI revealed that MzNHX1 shared high identity (>86%) with vacuolar Na+/H+ antiporters, including RhNHX1 from rose, cNHX1 from citrus, and AtNHX1 ...

  17. Semen analysis and sperm function tests: How much to test?

    Directory of Open Access Journals (Sweden)

    S S Vasan

    2011-01-01

    Full Text Available Semen analysis as an integral part of infertility investigations is taken as a surrogate measure for male fecundity in clinical andrology, male fertility, and pregnancy risk assessments. Clearly, laboratory seminology is still very much in its infancy. In as much as the creation of a conventional semen profile will always represent the foundations of male fertility evaluation, the 5th edition of the World Health Organization (WHO manual is a definitive statement on how such assessments should be carried out and how the quality should be controlled. A major advance in this new edition of the WHO manual, resolving the most salient critique of previous editions, is the development of the first well-defined reference ranges for semen analysis based on the analysis of over 1900 recent fathers. The methodology used in the assessment of the usual variables in semen analysis is described, as are many of the less common, but very valuable, sperm function tests. Sperm function testing is used to determine if the sperm have the biologic capacity to perform the tasks necessary to reach and fertilize ova and ultimately result in live births. A variety of tests are available to evaluate different aspects of these functions. To accurately use these functional assays, the clinician must understand what the tests measure, what the indications are for the assays, and how to interpret the results to direct further testing or patient management.

  18. Thyroid size and thyroid function during pregnancy: an analysis

    NARCIS (Netherlands)

    Berghout, A.; Wiersinga, W.

    1998-01-01

    An analysis of all available studies of thyroid size and function in pregnancy reveals that thyroid size, estimated by inspection and palpation or measured more accurately by ultrasonography, increases in pregnancy in areas of iodine deficiency but not in those with sufficient iodine. The increase

  19. Effects of Language of Implementation on Functional Analysis Outcomes

    Science.gov (United States)

    Rispoli, Mandy; O'Reilly, Mark; Lang, Russell; Sigafoos, Jeff; Mulloy, Austin; Aguilar, Jeannie; Singer, George

    2011-01-01

    This study evaluated the influence of language of implementation on functional analysis outcomes for a child with a severe intellectual disability from a Spanish-speaking home. Challenging behavior was assessed during 5-min sessions under 4 conditions; attention, play-verbal, play-nonverbal, and demand and across 2 phases; implementation in…

  20. Functional Interaction Network Construction and Analysis for Disease Discovery.

    Science.gov (United States)

    Wu, Guanming; Haw, Robin

    2017-01-01

    Network-based approaches project seemingly unrelated genes or proteins onto a large-scale network context, therefore providing a holistic visualization and analysis platform for genomic data generated from high-throughput experiments, reducing the dimensionality of data via using network modules and increasing the statistic analysis power. Based on the Reactome database, the most popular and comprehensive open-source biological pathway knowledgebase, we have developed a highly reliable protein functional interaction network covering around 60 % of total human genes and an app called ReactomeFIViz for Cytoscape, the most popular biological network visualization and analysis platform. In this chapter, we describe the detailed procedures on how this functional interaction network is constructed by integrating multiple external data sources, extracting functional interactions from human curated pathway databases, building a machine learning classifier called a Naïve Bayesian Classifier, predicting interactions based on the trained Naïve Bayesian Classifier, and finally constructing the functional interaction database. We also provide an example on how to use ReactomeFIViz for performing network-based data analysis for a list of genes.

  1. Apply Functional Modelling to Consequence Analysis in Supervision Systems

    DEFF Research Database (Denmark)

    Zhang, Xinxin; Lind, Morten; Gola, Giulio

    2013-01-01

    This paper will first present the purpose and goals of applying functional modelling approach to consequence analysis by adopting Multilevel Flow Modelling (MFM). MFM Models describe a complex system in multiple abstraction levels in both means-end dimension and whole-part dimension. It contains...

  2. Lexical, Functional Grammar Analysis of Korean Complex Predicates.

    Science.gov (United States)

    Kim, Hee-Seob

    The structure of complementation in complex predicates in Korean has attracted configurational analysis. Using a lexical functional grammar (LFG) framework, this paper examines the structure of complementation in complex predicates. The term "predicate" in this context is used to describe both verbs and adjectives that are assumed to…

  3. Functional Analysis and Treatment of Noncompliance by Preschool Children

    Science.gov (United States)

    Wilder, David A.; Harris, Carelle; Reagan, Renee; Rasey, Amy

    2007-01-01

    A functional analysis showed that noncompliance occurred most often for 2 preschoolers when it resulted in termination of a preferred activity, suggesting that noncompliance was maintained by positive reinforcement. A differential reinforcement procedure, which involved contingent access to coupons that could be exchanged for uninterrupted access…

  4. An Analysis of Sociolinguistic Functional Elements in the English ...

    African Journals Online (AJOL)

    An Analysis of Sociolinguistic Functional Elements in the English Language Course Books: Implications for English Language Teaching/Learning in Nigeria. ... that Nigerian secondary school students lack communicative abilities in both spoken and written English, because they are not taught natural language use in the ...

  5. Stress analysis in a functionally graded disc under mechanical loads ...

    Indian Academy of Sciences (India)

    Stress analysis in a functionally graded disc under mechanical loads and a steady state temperature distribution. HASAN ÇALLIO ˘GLU. Department of Mechanical Engineering, Pamukkale University, 20070,. Denizli, Turkey e-mail: hcallioglu@pau.edu.tr. MS received 25 November 2009; revised 12 August 2010; accepted.

  6. An Analysis of the Pragmatic Functions of Vague Language in ...

    African Journals Online (AJOL)

    This paper provides an analysis of the pragmatic function of vague language use in everyday interactions in Ekegusii. The paper analyses the types of meanings conveyed by referring expressions such as: The plural “you” for singular reference, The inclusive “we”, The pronoun “they”, Down toners and Placeholders.

  7. Semen analysis and sperm function tests: How much to test?

    Science.gov (United States)

    Vasan, S. S.

    2011-01-01

    Semen analysis as an integral part of infertility investigations is taken as a surrogate measure for male fecundity in clinical andrology, male fertility, and pregnancy risk assessments. Clearly, laboratory seminology is still very much in its infancy. In as much as the creation of a conventional semen profile will always represent the foundations of male fertility evaluation, the 5th edition of the World Health Organization (WHO) manual is a definitive statement on how such assessments should be carried out and how the quality should be controlled. A major advance in this new edition of the WHO manual, resolving the most salient critique of previous editions, is the development of the first well-defined reference ranges for semen analysis based on the analysis of over 1900 recent fathers. The methodology used in the assessment of the usual variables in semen analysis is described, as are many of the less common, but very valuable, sperm function tests. Sperm function testing is used to determine if the sperm have the biologic capacity to perform the tasks necessary to reach and fertilize ova and ultimately result in live births. A variety of tests are available to evaluate different aspects of these functions. To accurately use these functional assays, the clinician must understand what the tests measure, what the indications are for the assays, and how to interpret the results to direct further testing or patient management. PMID:21716889

  8. Mixed kernel function support vector regression for global sensitivity analysis

    Science.gov (United States)

    Cheng, Kai; Lu, Zhenzhou; Wei, Yuhao; Shi, Yan; Zhou, Yicheng

    2017-11-01

    Global sensitivity analysis (GSA) plays an important role in exploring the respective effects of input variables on an assigned output response. Amongst the wide sensitivity analyses in literature, the Sobol indices have attracted much attention since they can provide accurate information for most models. In this paper, a mixed kernel function (MKF) based support vector regression (SVR) model is employed to evaluate the Sobol indices at low computational cost. By the proposed derivation, the estimation of the Sobol indices can be obtained by post-processing the coefficients of the SVR meta-model. The MKF is constituted by the orthogonal polynomials kernel function and Gaussian radial basis kernel function, thus the MKF possesses both the global characteristic advantage of the polynomials kernel function and the local characteristic advantage of the Gaussian radial basis kernel function. The proposed approach is suitable for high-dimensional and non-linear problems. Performance of the proposed approach is validated by various analytical functions and compared with the popular polynomial chaos expansion (PCE). Results demonstrate that the proposed approach is an efficient method for global sensitivity analysis.

  9. Brain Modulyzer: Interactive Visual Analysis of Functional Brain Connectivity

    Science.gov (United States)

    Murugesan, Sugeerth; Bouchard, Kristofer; Brown, Jesse A.; Hamann, Bernd; Seeley, William W.; Trujillo, Andrew; Weber, Gunther H.

    2017-01-01

    We present Brain Modulyzer, an interactive visual exploration tool for functional magnetic resonance imaging (fMRI) brain scans, aimed at analyzing the correlation between different brain regions when resting or when performing mental tasks. Brain Modulyzer combines multiple coordinated views—such as heat maps, node link diagrams and anatomical views—using brushing and linking to provide an anatomical context for brain connectivity data. Integrating methods from graph theory and analysis, e.g., community detection and derived graph measures, makes it possible to explore the modular and hierarchical organization of functional brain networks. Providing immediate feedback by displaying analysis results instantaneously while changing parameters gives neuroscientists a powerful means to comprehend complex brain structure more effectively and efficiently and supports forming hypotheses that can then be validated via statistical analysis. To demonstrate the utility of our tool, we present two case studies—exploring progressive supranuclear palsy, as well as memory encoding and retrieval. PMID:28113724

  10. Real analysis series, functions of several variables, and applications

    CERN Document Server

    Laczkovich, Miklós

    2017-01-01

    This book develops the theory of multivariable analysis, building on the single variable foundations established in the companion volume, Real Analysis: Foundations and Functions of One Variable. Together, these volumes form the first English edition of the popular Hungarian original, Valós Analízis I & II, based on courses taught by the authors at Eötvös Loránd University, Hungary, for more than 30 years. Numerous exercises are included throughout, offering ample opportunities to master topics by progressing from routine to difficult problems. Hints or solutions to many of the more challenging exercises make this book ideal for independent study, or further reading. Intended as a sequel to a course in single variable analysis, this book builds upon and expands these ideas into higher dimensions. The modular organization makes this text adaptable for either a semester or year-long introductory course. Topics include: differentiation and integration of functions of several variables; infinite numerica...

  11. Brain Modulyzer: Interactive Visual Analysis of Functional Brain Connectivity.

    Science.gov (United States)

    Murugesan, Sugeerth; Bouchard, Kristofer; Brown, Jesse A; Hamann, Bernd; Seeley, William W; Trujillo, Andrew; Weber, Gunther H

    2016-05-09

    We present Brain Modulyzer, an interactive visual exploration tool for functional magnetic resonance imaging (fMRI) brain scans, aimed at analyzing the correlation between different brain regions when resting or when performing mental tasks. Brain Modulyzer combines multiple coordinated views-such as heat maps, node link diagrams and anatomical views-using brushing and linking to provide an anatomical context for brain connectivity data. Integrating methods from graph theory and analysis, e.g., community detection and derived graph measures, makes it possible to explore the modular and hierarchical organization of functional brain networks. Providing immediate feedback by displaying analysis results instantaneously while changing parameters gives neuroscientists a powerful means to comprehend complex brain structure more effectively and efficiently and supports forming hypotheses that can then be validated via statistical analysis. To demonstrate the utility of our tool, we present two case studies-exploring progressive supranuclear palsy, as well as memory encoding and retrieval.

  12. Discrete-Trial Functional Analysis and Functional Communication Training with Three Adults with Intellectual Disabilities and Problem Behavior

    Science.gov (United States)

    Chezan, Laura C.; Drasgow, Erik; Martin, Christian A.

    2014-01-01

    We conducted a sequence of two studies on the use of discrete-trial functional analysis and functional communication training. First, we used discrete-trial functional analysis (DTFA) to identify the function of problem behavior in three adults with intellectual disabilities and problem behavior. Results indicated clear patterns of problem…

  13. Advances in the indirect, descriptive, and experimental approaches to the functional analysis of problem behavior.

    Science.gov (United States)

    Wightman, Jade; Julio, Flávia; Virués-Ortega, Javier

    2014-05-01

    Experimental functional analysis is an assessment methodology to identify the environmental factors that maintain problem behavior in individuals with developmental disabilities and in other populations. Functional analysis provides the basis for the development of reinforcement-based approaches to treatment. This article reviews the procedures, validity, and clinical implementation of the methodological variations of functional analysis and function-based interventions. We present six variations of functional analysis methodology in addition to the typical functional analysis: brief functional analysis, single-function tests, latency-based functional analysis, functional analysis of precursors, and trial-based functional analysis. We also present the three general categories of function-based interventions: extinction, antecedent manipulation, and differential reinforcement. Functional analysis methodology is a valid and efficient approach to the assessment of problem behavior and the selection of treatment strategies.

  14. Consolidity analysis for fully fuzzy functions, matrices, probability and statistics

    Directory of Open Access Journals (Sweden)

    Walaa Ibrahim Gabr

    2015-03-01

    Full Text Available The paper presents a comprehensive review of the know-how for developing the systems consolidity theory for modeling, analysis, optimization and design in fully fuzzy environment. The solving of systems consolidity theory included its development for handling new functions of different dimensionalities, fuzzy analytic geometry, fuzzy vector analysis, functions of fuzzy complex variables, ordinary differentiation of fuzzy functions and partial fraction of fuzzy polynomials. On the other hand, the handling of fuzzy matrices covered determinants of fuzzy matrices, the eigenvalues of fuzzy matrices, and solving least-squares fuzzy linear equations. The approach demonstrated to be also applicable in a systematic way in handling new fuzzy probabilistic and statistical problems. This included extending the conventional probabilistic and statistical analysis for handling fuzzy random data. Application also covered the consolidity of fuzzy optimization problems. Various numerical examples solved have demonstrated that the new consolidity concept is highly effective in solving in a compact form the propagation of fuzziness in linear, nonlinear, multivariable and dynamic problems with different types of complexities. Finally, it is demonstrated that the implementation of the suggested fuzzy mathematics can be easily embedded within normal mathematics through building special fuzzy functions library inside the computational Matlab Toolbox or using other similar software languages.

  15. Lectures on functional analysis and the Lebesgue integral

    CERN Document Server

    Komornik, Vilmos

    2016-01-01

    This textbook, based on three series of lectures held by the author at the University of Strasbourg, presents functional analysis in a non-traditional way by generalizing elementary theorems of plane geometry to spaces of arbitrary dimension. This approach leads naturally to the basic notions and theorems. Most results are illustrated by the small ℓp spaces. The Lebesgue integral, meanwhile, is treated via the direct approach of Frigyes Riesz, whose constructive definition of measurable functions leads to optimal, clear-cut versions of the classical theorems of Fubini-Tonelli and Radon-Nikodým. Lectures on Functional Analysis and the Lebesgue Integral presents the most important topics for students, with short, elegant proofs. The exposition style follows the Hungarian mathematical tradition of Paul Erdős and others. The order of the first two parts, functional analysis and the Lebesgue integral, may be reversed. In the third and final part they are combined to study various spaces of continuous and integ...

  16. Function-Oriented Mobile Malware Analysis as First Aid

    Directory of Open Access Journals (Sweden)

    Jae-wook Jang

    2016-01-01

    Full Text Available Recently, highly well-crafted mobile malware has arisen as mobile devices manage highly valuable and sensitive information. Currently, it is impossible to detect and prevent all malware because the amount of new malware continues to increase exponentially; malware detection methods need to improve in order to respond quickly and effectively to malware. For the quick response, revealing the main purpose or functions of captured malware is important; however, only few recent works have attempted to find malware’s main purpose. Our approach is designed to help with efficient and effective incident responses or countermeasure development by analyzing the main functions of malicious behavior. In this paper, we propose a novel method for function-oriented malware analysis approach based on analysis of suspicious API call patterns. Instead of extracting API call patterns for malware in each family, we focus on extracting such patterns for certain malicious functionalities. Our proposed method dumps memory sections where an application is allocated and extracts suspicious API sequences from bytecode by comparing with predefined suspicious API lists. By matching API call patterns with our functionality database, our method determines whether they are malicious. The experiment results demonstrate that our method performs well in detecting malware with high accuracy.

  17. Population structure analysis using rare and common functional variants

    Directory of Open Access Journals (Sweden)

    Ding Lili

    2011-11-01

    Full Text Available Abstract Next-generation sequencing technologies now make it possible to genotype and measure hundreds of thousands of rare genetic variations in individuals across the genome. Characterization of high-density genetic variation facilitates control of population genetic structure on a finer scale before large-scale genotyping in disease genetics studies. Population structure is a well-known, prevalent, and important factor in common variant genetic studies, but its relevance in rare variants is unclear. We perform an extensive population structure analysis using common and rare functional variants from the Genetic Analysis Workshop 17 mini-exome sequence. The analysis based on common functional variants required 388 principal components to account for 90% of the variation in population structure. However, an analysis based on rare variants required 532 significant principal components to account for similar levels of variation. Using rare variants, we detected fine-scale substructure beyond the population structure identified using common functional variants. Our results show that the level of population structure embedded in rare variant data is different from the level embedded in common variant data and that correcting for population structure is only as good as the level one wishes to correct.

  18. Network analysis of intrinsic functional brain connectivity in Alzheimer's disease.

    Directory of Open Access Journals (Sweden)

    Kaustubh Supekar

    2008-06-01

    Full Text Available Functional brain networks detected in task-free ("resting-state" functional magnetic resonance imaging (fMRI have a small-world architecture that reflects a robust functional organization of the brain. Here, we examined whether this functional organization is disrupted in Alzheimer's disease (AD. Task-free fMRI data from 21 AD subjects and 18 age-matched controls were obtained. Wavelet analysis was applied to the fMRI data to compute frequency-dependent correlation matrices. Correlation matrices were thresholded to create 90-node undirected-graphs of functional brain networks. Small-world metrics (characteristic path length and clustering coefficient were computed using graph analytical methods. In the low frequency interval 0.01 to 0.05 Hz, functional brain networks in controls showed small-world organization of brain activity, characterized by a high clustering coefficient and a low characteristic path length. In contrast, functional brain networks in AD showed loss of small-world properties, characterized by a significantly lower clustering coefficient (p<0.01, indicative of disrupted local connectivity. Clustering coefficients for the left and right hippocampus were significantly lower (p<0.01 in the AD group compared to the control group. Furthermore, the clustering coefficient distinguished AD participants from the controls with a sensitivity of 72% and specificity of 78%. Our study provides new evidence that there is disrupted organization of functional brain networks in AD. Small-world metrics can characterize the functional organization of the brain in AD, and our findings further suggest that these network measures may be useful as an imaging-based biomarker to distinguish AD from healthy aging.

  19. Rasch analysis of the Indian vision function questionnaire.

    Science.gov (United States)

    Gothwal, Vijaya K; Bagga, Deepak K; Sumalini, Rebecca

    2012-05-01

    To investigate the psychometric properties of the three scales (general functioning, psychosocial impact, visual symptoms) of the Indian vision function questionnaire (IND-VFQ) using the Rasch measurement model. 236 visually impaired patients referred to vision rehabilitation centres were administered the 33-item IND-VFQ. Rasch analysis was used to investigate the scales for the following properties: precision by person separation (ie, discrimination between strata of patient ability, recommended minimum value 2.0), unidimensionality (ie, measurement of a single construct) and targeting (ie, matching of item difficulty to patient ability). Only the general functioning scale possessed adequate measurement precision (person separation 3.49). However, it lacked unidimensionality as some items did not contribute towards the measurement of a single construct indicating a secondary dimension. This comprised seven mobility items, which formed a separate valid subscale with good targeting (-0.57 logits). Deleting these items restored unidimensionality but a misfitting item required removal. Following this the 13 items fit and were visual functioning related. However, targeting was suboptimal (-1.13 logits). The general functioning scale of the IND-VFQ consists of two separate unidimensional constructs: visual functioning and mobility. Both these Rasch scaled versions with good psychometric properties are effective tools for the assessment of visually impaired patients in India.

  20. Analysis of room transfer function and reverberant signal statistics

    DEFF Research Database (Denmark)

    Georganti, Eleftheria; Mourjopoulos, John; Jacobsen, Finn

    2008-01-01

    For some time now, statistical analysis has been a valuable tool in analyzing room transfer functions (RTFs). This work examines existing statistical time-frequency models and techniques for RTF analysis (e.g., Schroeder's stochastic model and the standard deviation over frequency bands for the R...... “anechoic” and “reverberant” audio speech signals, in order to model the alterations due to room acoustics. The above results are obtained from both in-situ room response measurements and controlled acoustical response simulations.......For some time now, statistical analysis has been a valuable tool in analyzing room transfer functions (RTFs). This work examines existing statistical time-frequency models and techniques for RTF analysis (e.g., Schroeder's stochastic model and the standard deviation over frequency bands for the RTF...... magnitude and phase). RTF fractional octave smoothing, as with 1-slash 3 octave analysis, may lead to RTF simplifications that can be useful for several audio applications, like room compensation, room modeling, auralisation purposes. The aim of this work is to identify the relationship of optimal response...

  1. Institutions Function and Failure Statistic and Analysis of Wind Turbine

    Science.gov (United States)

    yang, Ma; Chengbing, He; Xinxin, Feng

    Recently,with install capacity of wind turbines increases continuously, the wind power consisting of operation,research on reliability,maintenance and rapair will be developed into a key point..Failure analysis can support operation,management of spare components and accessories in wind plants,maintenance and repair of wind turbines.In this paper,with the eye of wind plants'structure and function,statistic and analysis the common fault of each part of the plant,and then find out the faults law, faults cause and fault effect,from which put forward the corresponding measures.

  2. Receiver function analysis using AlpArray stations in Hungary

    Science.gov (United States)

    Dániel, Kalmár; Bálint, Süle; István, Bondár

    2017-04-01

    The AlpArray temporary seismic network, together with the permanent stations of the Hungarian National Seismological Network provid an unprecedented density and resolution to study the Eastern Alps - Pannonian basin transition zone. Previous receiver functions studies .(Hetényi et al., 2007, 2015) in the region used a much smaller station density and shorter time period than the present paper. In the analysis we used data from 48 permanent and temporary AlpArray stations in Hungary and neighbouring countries. We present our methodology (P-wave receiver function analysis, H-K grid search and cross-correlation matrix methods), the pitfalls in processing, and finally our result, the detailed Moho map of the region.

  3. Functional analysis screening for problem behavior maintained by automatic reinforcement.

    Science.gov (United States)

    Querim, Angie C; Iwata, Brian A; Roscoe, Eileen M; Schlichenmeyer, Kevin J; Ortega, Javier Virués; Hurl, Kylee E

    2013-01-01

    A common finding in previous research is that problem behavior maintained by automatic reinforcement continues to occur in the alone condition of a functional analysis (FA), whereas behavior maintained by social reinforcement typically is extinguished. Thus, the alone condition may represent an efficient screening procedure when maintenance by automatic reinforcement is suspected. We conducted a series of 5-min alone (or no-interaction) probes for 30 cases of problem behavior and compared initial predictions of maintenance or extinction to outcomes obtained in subsequent FAs. Results indicated that data from the screening procedure accurately predicted that problem behavior was maintained by automatic reinforcement in 21 of 22 cases and by social reinforcement in 7 of 8 cases. Thus, results of the screening accurately predicted the function of problem behavior (social vs. automatic reinforcement) in 28 of 30 cases. © Society for the Experimental Analysis of Behavior.

  4. Functional analysis of molecular interactions in synthetic auxin response circuits.

    Science.gov (United States)

    Pierre-Jerome, Edith; Moss, Britney L; Lanctot, Amy; Hageman, Amber; Nemhauser, Jennifer L

    2016-10-04

    Auxin-regulated transcription pivots on the interaction between the AUXIN/INDOLE-3-ACETIC ACID (Aux/IAA) repressor proteins and the AUXIN RESPONSE FACTOR (ARF) transcription factors. Recent structural analyses of ARFs and Aux/IAAs have raised questions about the functional complexes driving auxin transcriptional responses. To parse the nature and significance of ARF-DNA and ARF-Aux/IAA interactions, we analyzed structure-guided variants of synthetic auxin response circuits in the budding yeast Saccharomyces cerevisiae Our analysis revealed that promoter architecture could specify ARF activity and that ARF19 required dimerization at two distinct domains for full transcriptional activation. In addition, monomeric Aux/IAAs were able to repress ARF activity in both yeast and plants. This systematic, quantitative structure-function analysis identified a minimal complex-comprising a single Aux/IAA repressing a pair of dimerized ARFs-sufficient for auxin-induced transcription.

  5. Quantitative analysis of the effective functional structure in yeast glycolysis.

    Directory of Open Access Journals (Sweden)

    Ildefonso M De la Fuente

    Full Text Available The understanding of the effective functionality that governs the enzymatic self-organized processes in cellular conditions is a crucial topic in the post-genomic era. In recent studies, Transfer Entropy has been proposed as a rigorous, robust and self-consistent method for the causal quantification of the functional information flow among nonlinear processes. Here, in order to quantify the functional connectivity for the glycolytic enzymes in dissipative conditions we have analyzed different catalytic patterns using the technique of Transfer Entropy. The data were obtained by means of a yeast glycolytic model formed by three delay differential equations where the enzymatic rate equations of the irreversible stages have been explicitly considered. These enzymatic activity functions were previously modeled and tested experimentally by other different groups. The results show the emergence of a new kind of dynamical functional structure, characterized by changing connectivity flows and a metabolic invariant that constrains the activity of the irreversible enzymes. In addition to the classical topological structure characterized by the specific location of enzymes, substrates, products and feedback-regulatory metabolites, an effective functional structure emerges in the modeled glycolytic system, which is dynamical and characterized by notable variations of the functional interactions. The dynamical structure also exhibits a metabolic invariant which constrains the functional attributes of the enzymes. Finally, in accordance with the classical biochemical studies, our numerical analysis reveals in a quantitative manner that the enzyme phosphofructokinase is the key-core of the metabolic system, behaving for all conditions as the main source of the effective causal flows in yeast glycolysis.

  6. Quantitative Analysis of the Effective Functional Structure in Yeast Glycolysis

    Science.gov (United States)

    De la Fuente, Ildefonso M.; Cortes, Jesus M.

    2012-01-01

    The understanding of the effective functionality that governs the enzymatic self-organized processes in cellular conditions is a crucial topic in the post-genomic era. In recent studies, Transfer Entropy has been proposed as a rigorous, robust and self-consistent method for the causal quantification of the functional information flow among nonlinear processes. Here, in order to quantify the functional connectivity for the glycolytic enzymes in dissipative conditions we have analyzed different catalytic patterns using the technique of Transfer Entropy. The data were obtained by means of a yeast glycolytic model formed by three delay differential equations where the enzymatic rate equations of the irreversible stages have been explicitly considered. These enzymatic activity functions were previously modeled and tested experimentally by other different groups. The results show the emergence of a new kind of dynamical functional structure, characterized by changing connectivity flows and a metabolic invariant that constrains the activity of the irreversible enzymes. In addition to the classical topological structure characterized by the specific location of enzymes, substrates, products and feedback-regulatory metabolites, an effective functional structure emerges in the modeled glycolytic system, which is dynamical and characterized by notable variations of the functional interactions. The dynamical structure also exhibits a metabolic invariant which constrains the functional attributes of the enzymes. Finally, in accordance with the classical biochemical studies, our numerical analysis reveals in a quantitative manner that the enzyme phosphofructokinase is the key-core of the metabolic system, behaving for all conditions as the main source of the effective causal flows in yeast glycolysis. PMID:22393350

  7. Semantic Analysis of Verbal Collocations with Lexical Functions

    CERN Document Server

    Gelbukh, Alexander

    2013-01-01

    This book is written for both linguists and computer scientists working in the field of artificial intelligence as well as to anyone interested in intelligent text processing. Lexical function is a concept that formalizes semantic and syntactic relations between lexical units. Collocational relation is a type of institutionalized lexical relations which holds between the base and its partner in a collocation. Knowledge of collocation is important for natural language processing because collocation comprises the restrictions on how words can be used together. The book shows how collocations can be annotated with lexical functions in a computer readable dictionary - allowing their precise semantic analysis in texts and their effective use in natural language applications including parsers, high quality machine translation, periphrasis system and computer-aided learning of lexica. The books shows how to extract collocations from corpora and annotate them with lexical functions automatically. To train algorithms,...

  8. Knowledge-based analysis of functional impacts of mutations in ...

    Indian Academy of Sciences (India)

    Knowledge-based analysis of functional impacts of mutations in microRNA seed regions. Supplementary figure 1. Summary of predicted miRNA targets from TargetScan and miRanda for all the SNPs in miRNA seeds. Percentages of miRNA targets found from only TargetScan, from only miRanda and from both TargetScan ...

  9. Phylogenomic and functional domain analysis of polyketide synthases in Fusarium

    Energy Technology Data Exchange (ETDEWEB)

    Brown, Daren W.; Butchko, Robert A.; Baker, Scott E.; Proctor, Robert H.

    2012-02-01

    Fusarium species are ubiquitous in nature, cause a range of plant diseases, and produce a variety of chemicals often referred to as secondary metabolites. Although some fungal secondary metabolites affect plant growth or protect plants from other fungi and bacteria, their presence in grain based food and feed is more often associated with a variety of diseases in plants and in animals. Many of these structurally diverse metabolites are derived from a family of related enzymes called polyketide synthases (PKSs). A search of genomic sequence of Fusarium verticillioides, F. graminearum, F. oxysporum and Nectria haematococca (anamorph F. solani) identified a total of 58 PKS genes. To gain insight into how this gene family evolved and to guide future studies, we conducted a phylogenomic and functional domain analysis. The resulting genealogy suggested that Fusarium PKSs represent 34 different groups responsible for synthesis of different core metabolites. The analyses indicate that variation in the Fusarium PKS gene family is due to gene duplication and loss events as well as enzyme gain-of-function due to the acquisition of new domains or of loss-of-function due to nucleotide mutations. Transcriptional analysis indicate that the 16 F. verticillioides PKS genes are expressed under a range of conditions, further evidence that they are functional genes that confer the ability to produce secondary metabolites.

  10. Phylotyping and functional analysis of two ancient human microbiomes.

    Directory of Open Access Journals (Sweden)

    Raúl Y Tito

    Full Text Available BACKGROUND: The Human Microbiome Project (HMP is one of the U.S. National Institutes of Health Roadmap for Medical Research. Primary interests of the HMP include the distinctiveness of different gut microbiomes, the factors influencing microbiome diversity, and the functional redundancies of the members of human microbiotas. In this present work, we contribute to these interests by characterizing two extinct human microbiotas. METHODOLOGY/PRINCIPAL FINDINGS: We examine two paleofecal samples originating from cave deposits in Durango Mexico and dating to approximately 1300 years ago. Contamination control is a serious issue in ancient DNA research; we use a novel approach to control contamination. After we determined that each sample originated from a different human, we generated 45 thousand shotgun DNA sequencing reads. The phylotyping and functional analysis of these reads reveals a signature consistent with the modern gut ecology. Interestingly, inter-individual variability for phenotypes but not functional pathways was observed. The two ancient samples have more similar functional profiles to each other than to a recently published profile for modern humans. This similarity could not be explained by a chance sampling of the databases. CONCLUSIONS/SIGNIFICANCE: We conduct a phylotyping and functional analysis of ancient human microbiomes, while providing novel methods to control for DNA contamination and novel hypotheses about past microbiome biogeography. We postulate that natural selection has more of an influence on microbiome functional profiles than it does on the species represented in the microbial ecology. We propose that human microbiomes were more geographically structured during pre-Columbian times than today.

  11. Using Operational Analysis to Improve Access to Pulmonary Function Testing

    Directory of Open Access Journals (Sweden)

    Ada Ip

    2016-01-01

    Full Text Available Background. Timely pulmonary function testing is crucial to improving diagnosis and treatment of pulmonary diseases. Perceptions of poor access at an academic pulmonary function laboratory prompted analysis of system demand and capacity to identify factors contributing to poor access. Methods. Surveys and interviews identified stakeholder perspectives on operational processes and access challenges. Retrospective data on testing demand and resource capacity was analyzed to understand utilization of testing resources. Results. Qualitative analysis demonstrated that stakeholder groups had discrepant views on access and capacity in the laboratory. Mean daily resource utilization was 0.64 (SD 0.15, with monthly average utilization consistently less than 0.75. Reserved testing slots for subspecialty clinics were poorly utilized, leaving many testing slots unfilled. When subspecialty demand exceeded number of reserved slots, there was sufficient capacity in the pulmonary function schedule to accommodate added demand. Findings were shared with stakeholders and influenced scheduling process improvements. Conclusion. This study highlights the importance of operational data to identify causes of poor access, guide system decision-making, and determine effects of improvement initiatives in a variety of healthcare settings. Importantly, simple operational analysis can help to improve efficiency of health systems with little or no added financial investment.

  12. Functional gait analysis in a spinal contusion rat model.

    Science.gov (United States)

    Bhimani, Abhiraj D; Kheirkhah, Pouyan; Arnone, Gregory D; Nahhas, Cindy R; Kumar, Prateek; Wonais, Matt; Hidrogo, Hugo; Aguilar, Eddy; Spalinski, Daniel; Gopalka, Mahie; Roth, Steven; Mehta, Ankit I

    2017-09-08

    Evaluating functional performance of spinal cord injury (SCI) rat models is essential for the development of novel treatments and breakthroughs. However, due to the variety of functional analysis methods available - each with its own strengths and weaknesses - it can be challenging to choose the most appropriate functional analysis test for the animal model. Therefore, we analyzed the strengths and weaknesses of five methods in order to determine which test is not only accurate and easily reproducible, but also relatively inexpensive so that it can be adopted universally. When comparing the Basso, Beattie, and Bresnahan (BBB) test, Ladder walking test, CatWalk test, Rotating Rod test, Microsoft Kinect system and VICON, we used the criteria of sensitivity, quality of data generated, statistical analysis of data, and rate of human error. These specific tests were chosen in order to compare the advantages and disadvantages of simple yet effective methods (BBB, Ladder test, and Rotating Rod test) to more complex and computerized methods (Catwalk, Microsoft Kinect and VICON). Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. Discriminant analysis of functional optical topography for schizophrenia diagnosis

    Science.gov (United States)

    Chuang, Ching-Cheng; Nakagome, Kazuyuki; Pu, Shenghong; Lan, Tsuo-Hung; Lee, Chia-Yen; Sun, Chia-Wei

    2014-01-01

    Abnormal prefrontal function plays a central role in the cognition deficits of schizophrenic patients; however, the character of the relationship between discriminant analysis and prefrontal activation remains undetermined. Recently, evidence of low prefrontal cortex (PFC) activation in individuals with schizophrenia has also been found during verbal fluency tests (VFT) and other cognitive tests with several neuroimaging methods. The purpose of this study is to assess the hemodynamic changes of the PFC and discriminant analysis between schizophrenia patients and healthy controls during VFT task by utilizing functional optical topography. A total of 99 subjects including 53 schizophrenic patients and 46 age- and gender-matched healthy controls were studied. The results showed that the healthy group had larger activation in the right and left PFC than in the middle PFC. Besides, the schizophrenic group showed weaker task performance and lower activation in the whole PFC than the healthy group. The result of the discriminant analysis showed a significant difference with P value discriminant analysis of schizophrenic diagnosis.

  14. Qualitative Functional Decomposition Analysis of Evolved Neuromorphic Flight Controllers

    Directory of Open Access Journals (Sweden)

    Sanjay K. Boddhu

    2012-01-01

    Full Text Available In the previous work, it was demonstrated that one can effectively employ CTRNN-EH (a neuromorphic variant of EH method methodology to evolve neuromorphic flight controllers for a flapping wing robot. This paper describes a novel frequency grouping-based analysis technique, developed to qualitatively decompose the evolved controllers into explainable functional control blocks. A summary of the previous work related to evolving flight controllers for two categories of the controller types, called autonomous and nonautonomous controllers, is provided, and the applicability of the newly developed decomposition analysis for both controller categories is demonstrated. Further, the paper concludes with appropriate discussion of ongoing work and implications for possible future work related to employing the CTRNN-EH methodology and the decomposition analysis techniques presented in this paper.

  15. Accident Analysis and Barrier Function (AEB) Method. Manual for Incident Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Svenson, Ola [Stockholm Univ. (Sweden). Dept. of Psychology

    2000-02-01

    The Accident Analysis and Barrier Function (AEB) Method models an accident or incident as a series of interactions between human and technical systems. In the sequence of human and technical errors leading to an accident there is, in principle, a possibility to arrest the development between each two successive errors. This can be done by a barrier function which, for example, can stop an operator from making an error. A barrier function can be performed by one or several barrier function systems. To illustrate, a mechanical system, a computer system or another operator can all perform a given barrier function to stop an operator from making an error. The barrier function analysis consists of analysis of suggested improvements, the effectiveness of the improvements, the costs of implementation, probability of implementation, the cost of maintaining the barrier function, the probability that maintenance will be kept up to standards and the generalizability of the suggested improvement. The AEB method is similar to the US method called HPES, but differs from that method in different ways. To exemplify, the AEB method has more emphasis on technical errors than HPES. In contrast to HPES that describes a series of events, the AEB method models only errors. This gives a more focused analysis making it well suited for checking other HPES-type accident analyses. However, the AEB method is a generic and stand-alone method that has been applied in other fields than nuclear power, such as, in traffic accident analyses.

  16. Hepatic mitochondrial function analysis using needle liver biopsy samples.

    Directory of Open Access Journals (Sweden)

    Michael J J Chu

    Full Text Available BACKGROUNDS AND AIM: Current assessment of pre-operative liver function relies upon biochemical blood tests and histology but these only indirectly measure liver function. Mitochondrial function (MF analysis allows direct measurement of cellular metabolic function and may provide an additional index of hepatic health. Conventional MF analysis requires substantial tissue samples (>100 mg obtained at open surgery. Here we report a method to assess MF using <3 mg of tissue obtained by a Tru-cut® biopsy needle making it suitable for percutaneous application. METHODS: An 18G Bard® Max-core® biopsy instrument was used to collect samples. The optimal Tru-cut® sample weight, stability in ice-cold University of Wisconsin solution, reproducibility and protocol utility was initially evaluated in Wistar rat livers then confirmed in human samples. MF was measured in saponin-permeabilized samples using high-resolution respirometry. RESULTS: The average mass of a single rat and human liver Tru-cut® biopsy was 5.60±0.30 and 5.16±0.15 mg, respectively (mean; standard error of mean. Two milligram of sample was found the lowest feasible mass for the MF assay. Tissue MF declined after 1 hour of cold storage. Six replicate measurements within rats and humans (n = 6 each showed low coefficient of variation (<10% in measurements of State-III respiration, electron transport chain (ETC capacity and respiratory control ratio (RCR. Ischemic rat and human liver samples consistently showed lower State-III respiration, ETC capacity and RCR, compared to normal perfused liver samples. CONCLUSION: Consistent measurement of liver MF and detection of derangement in a disease state was successfully demonstrated using less than half the tissue from a single Tru-cut® biopsy. Using this technique outpatient assessment of liver MF is now feasible, providing a new assay for the evaluation of hepatic function.

  17. Analysis of a Heroin Epidemic Model with Saturated Treatment Function

    Directory of Open Access Journals (Sweden)

    Isaac Mwangi Wangari

    2017-01-01

    Full Text Available A mathematical model is developed that examines how heroin addiction spreads in society. The model is formulated to take into account the treatment of heroin users by incorporating a realistic functional form that “saturates” representing the limited availability of treatment. Bifurcation analysis reveals that the model has an intrinsic backward bifurcation whenever the saturation parameter is larger than a fixed threshold. We are particularly interested in studying the model’s global stability. In the absence of backward bifurcations, Lyapunov functions can often be found and used to prove global stability. However, in the presence of backward bifurcations, such Lyapunov functions may not exist or may be difficult to construct. We make use of the geometric approach to global stability to derive a condition that ensures that the system is globally asymptotically stable. Numerical simulations are also presented to give a more complete representation of the model dynamics. Sensitivity analysis performed by Latin hypercube sampling (LHS suggests that the effective contact rate in the population, the relapse rate of heroin users undergoing treatment, and the extent of saturation of heroin users are mechanisms fuelling heroin epidemic proliferation.

  18. Functional complexity of the axonal growth cone: a proteomic analysis.

    Directory of Open Access Journals (Sweden)

    Adriana Estrada-Bernal

    Full Text Available The growth cone, the tip of the emerging neurite, plays a crucial role in establishing the wiring of the developing nervous system. We performed an extensive proteomic analysis of axonal growth cones isolated from the brains of fetal Sprague-Dawley rats. Approximately 2000 proteins were identified at ≥ 99% confidence level. Using informatics, including functional annotation cluster and KEGG pathway analysis, we found great diversity of proteins involved in axonal pathfinding, cytoskeletal remodeling, vesicular traffic and carbohydrate metabolism, as expected. We also found a large and complex array of proteins involved in translation, protein folding, posttranslational processing, and proteasome/ubiquitination-dependent degradation. Immunofluorescence studies performed on hippocampal neurons in culture confirmed the presence in the axonal growth cone of proteins representative of these processes. These analyses also provide evidence for rough endoplasmic reticulum and reveal a reticular structure equipped with Golgi-like functions in the axonal growth cone. Furthermore, Western blot revealed the growth cone enrichment, relative to fetal brain homogenate, of some of the proteins involved in protein synthesis, folding and catabolism. Our study provides a resource for further research and amplifies the relatively recently developed concept that the axonal growth cone is equipped with proteins capable of performing a highly diverse range of functions.

  19. Functional approach to high-throughput plant growth analysis

    Science.gov (United States)

    2013-01-01

    Method Taking advantage of the current rapid development in imaging systems and computer vision algorithms, we present HPGA, a high-throughput phenotyping platform for plant growth modeling and functional analysis, which produces better understanding of energy distribution in regards of the balance between growth and defense. HPGA has two components, PAE (Plant Area Estimation) and GMA (Growth Modeling and Analysis). In PAE, by taking the complex leaf overlap problem into consideration, the area of every plant is measured from top-view images in four steps. Given the abundant measurements obtained with PAE, in the second module GMA, a nonlinear growth model is applied to generate growth curves, followed by functional data analysis. Results Experimental results on model plant Arabidopsis thaliana show that, compared to an existing approach, HPGA reduces the error rate of measuring plant area by half. The application of HPGA on the cfq mutant plants under fluctuating light reveals the correlation between low photosynthetic rates and small plant area (compared to wild type), which raises a hypothesis that knocking out cfq changes the sensitivity of the energy distribution under fluctuating light conditions to repress leaf growth. Availability HPGA is available at http://www.msu.edu/~jinchen/HPGA. PMID:24565437

  20. Metabolomics and Cheminformatics Analysis of Antifungal Function of Plant Metabolites

    Directory of Open Access Journals (Sweden)

    Miroslava Cuperlovic-Culf

    2016-09-01

    Full Text Available Fusarium head blight (FHB, primarily caused by Fusarium graminearum, is a devastating disease of wheat. Partial resistance to FHB of several wheat cultivars includes specific metabolic responses to inoculation. Previously published studies have determined major metabolic changes induced by pathogens in resistant and susceptible plants. Functionality of the majority of these metabolites in resistance remains unknown. In this work we have made a compilation of all metabolites determined as selectively accumulated following FHB inoculation in resistant plants. Characteristics, as well as possible functions and targets of these metabolites, are investigated using cheminformatics approaches with focus on the likelihood of these metabolites acting as drug-like molecules against fungal pathogens. Results of computational analyses of binding properties of several representative metabolites to homology models of fungal proteins are presented. Theoretical analysis highlights the possibility for strong inhibitory activity of several metabolites against some major proteins in Fusarium graminearum, such as carbonic anhydrases and cytochrome P450s. Activity of several of these compounds has been experimentally confirmed in fungal growth inhibition assays. Analysis of anti-fungal properties of plant metabolites can lead to the development of more resistant wheat varieties while showing novel application of cheminformatics approaches in the analysis of plant/pathogen interactions.

  1. Japanese internally headed relatives: A hybrid analysis with Kuroda functions

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    Fred Landman

    2016-09-01

    Full Text Available This paper argues that the analysis of Japanese internally headed relatives must steer a course between the Scylla and Charybdis of reduction to externally headed relatives and reduction to discourse anaphora. The analysis given here is based on that of Grosu & Landman (2012, but the present paper reconsiders some of the central data in Grosu & Landman (2012 in the light of the diagnostic tests given in Grosu & Hoshi (2016, and argues for a simplification of the basic analysis, which actually strengthens the theory considerably. The paper then extends the analysis given with an analytic tool – a Lombardian presupposition mechanism for Kuroda functions – which allows the implementation of the Kuroda relevancy condition (Kuroda 1976–77. It is further shown how the improved analysis can provide a semantics for so-called 'change relatives', which were mentioned but not analyzed in Hoshi (1995 and Kim (2007. An appendix recapitulates and refines the discussion of scope phenomena in internally headed relatives from Grosu & Landman (2012.

  2. Morpho-functional analysis of Stargardt Disease for reading.

    Science.gov (United States)

    Sasso, Paola; Scupola, Andrea; Silvestri, Valeria; Amore, Filippo M; Abed, Edoardo; Calandriello, Luigi; Grimaldi, Gabriela; Caporossi, Aldo

    2017-06-01

    To analyze Stargardt disease (STGD) by morpho-functional examination and investigate the relationship between morpho-functional measures and reading performance. Observational case series study. Fifteen patients with STGD. Twenty-six eyes of 15 patients underwent complete ophthalmic evaluation. Spectral domain optical coherence tomography, fundus autofluorescence (FAF), best corrected visual acuity (BCVA), and microperimetric examinations were performed. FAF and optical coherence tomography (OCT) overlap on microperimetric images was obtained in order to evaluate both tomographic and FAF features passing through the eccentric fixation area. Both morphologic features and functional data were correlated with magnification of prescribed device and reading rate. Univariable analysis showed a significant correlation between magnification power and greatest linear dimension of both OCT and FAF (r = 0.69 and r = 0.67; p reading rate. Magnification levels showed a positive correlation with eccentric preferred retinal location (p = 0.03) and the degree of FAF alteration (normal, dishomogeneous, ipoautofluorescence; p imaging on microperimetric exam, residual activity of outer retinal layers passing through the eccentric fixation area seems to be related with required magnification and reading rate. Identification of morpho-functional parameters is helpful for designing a customized rehabilitative program. Copyright © 2017 Canadian Ophthalmological Society. Published by Elsevier Inc. All rights reserved.

  3. Pragmatics of Ostensible Invitations in Iraqi Arabic: Function Analysis

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    Basim Jubair Kadhim

    2017-12-01

    Full Text Available This paper deals with the pragmatic functions of ostensible invitations as used by Iraqi Arabic speakers. Iraqi society is known of the traditions in which pragmatic language is highly considered that Iraqi Arabic speakers use speech acts in order to pay compliments among each other. The issuance of various ostensible speech acts is to convey other purposes than those conveyed by the genuine ones. It is believed that it is vital to dig deep in the functions of the speech act of invitation as this speech act is mostly used by the Iraqi Arabic speakers in an ostensible manner. So, depending on a test formulated and administered to Iraqi Arabic speakers represented by college students, data have been collected and analyzed to show the strategies and functions used peculiarly by Iraqi Arabic speakers in addition to those stipulated by Clark and Isaac whose model is adapted in the analysis. In terms of the strategies used in addition to the seven ones mentioned in the model, new ones emerged and are believed to be peculiar to the Iraqi  Arabic speakers, for they are strongly related to the social norms of the Iraqi society. On the level of pragmatic functions, Iraqi Arabic speakers tend to use ostensible speech act of invitation for various purposes; chief among them are compliment, polite strategy, mitigation devices and others.

  4. Advanced functional network analysis in the geosciences: The pyunicorn package

    Science.gov (United States)

    Donges, Jonathan F.; Heitzig, Jobst; Runge, Jakob; Schultz, Hanna C. H.; Wiedermann, Marc; Zech, Alraune; Feldhoff, Jan; Rheinwalt, Aljoscha; Kutza, Hannes; Radebach, Alexander; Marwan, Norbert; Kurths, Jürgen

    2013-04-01

    Functional networks are a powerful tool for analyzing large geoscientific datasets such as global fields of climate time series originating from observations or model simulations. pyunicorn (pythonic unified complex network and recurrence analysis toolbox) is an open-source, fully object-oriented and easily parallelizable package written in the language Python. It allows for constructing functional networks (aka climate networks) representing the structure of statistical interrelationships in large datasets and, subsequently, investigating this structure using advanced methods of complex network theory such as measures for networks of interacting networks, node-weighted statistics or network surrogates. Additionally, pyunicorn allows to study the complex dynamics of geoscientific systems as recorded by time series by means of recurrence networks and visibility graphs. The range of possible applications of the package is outlined drawing on several examples from climatology.

  5. Uncertainty Analysis via Failure Domain Characterization: Polynomial Requirement Functions

    Science.gov (United States)

    Crespo, Luis G.; Munoz, Cesar A.; Narkawicz, Anthony J.; Kenny, Sean P.; Giesy, Daniel P.

    2011-01-01

    This paper proposes an uncertainty analysis framework based on the characterization of the uncertain parameter space. This characterization enables the identification of worst-case uncertainty combinations and the approximation of the failure and safe domains with a high level of accuracy. Because these approximations are comprised of subsets of readily computable probability, they enable the calculation of arbitrarily tight upper and lower bounds to the failure probability. A Bernstein expansion approach is used to size hyper-rectangular subsets while a sum of squares programming approach is used to size quasi-ellipsoidal subsets. These methods are applicable to requirement functions whose functional dependency on the uncertainty is a known polynomial. Some of the most prominent features of the methodology are the substantial desensitization of the calculations from the uncertainty model assumed (i.e., the probability distribution describing the uncertainty) as well as the accommodation for changes in such a model with a practically insignificant amount of computational effort.

  6. Uncertainty Analysis via Failure Domain Characterization: Unrestricted Requirement Functions

    Science.gov (United States)

    Crespo, Luis G.; Kenny, Sean P.; Giesy, Daniel P.

    2011-01-01

    This paper proposes an uncertainty analysis framework based on the characterization of the uncertain parameter space. This characterization enables the identification of worst-case uncertainty combinations and the approximation of the failure and safe domains with a high level of accuracy. Because these approximations are comprised of subsets of readily computable probability, they enable the calculation of arbitrarily tight upper and lower bounds to the failure probability. The methods developed herein, which are based on nonlinear constrained optimization, are applicable to requirement functions whose functional dependency on the uncertainty is arbitrary and whose explicit form may even be unknown. Some of the most prominent features of the methodology are the substantial desensitization of the calculations from the assumed uncertainty model (i.e., the probability distribution describing the uncertainty) as well as the accommodation for changes in such a model with a practically insignificant amount of computational effort.

  7. A terror management analysis of the psychological functions of religion.

    Science.gov (United States)

    Vail, Kenneth E; Rothschild, Zachary K; Weise, Dave R; Solomon, Sheldon; Pyszczynski, Tom; Greenberg, Jeff

    2010-02-01

    From a terror management theory (TMT) perspective, religion serves to manage the potential terror engendered by the uniquely human awareness of death by affording a sense of psychological security and hope of immortality. Although secular beliefs can also serve a terror management function, religious beliefs are particularly well suited to mitigate death anxiety because they are all encompassing, rely on concepts that are not easily disconfirmed, and promise literal immortality. Research is reviewed demonstrating that mortality salience produces increased belief in afterlife, supernatural agency, human ascension from nature, and spiritual distinctions between mind and body. The social costs and benefits of religious beliefs are considered and compared to those of secular worldviews. The terror management functions of, and benefits and costs associated with, different types of religious orientation, such as intrinsic religiosity, quest, and religious fundamentalism, are then examined. Finally, the TMT analysis is compared to other accounts of religion.

  8. GeoChips for Analysis of Microbial Functional Communities

    Energy Technology Data Exchange (ETDEWEB)

    Van Nostrand, Joy D.; Wu, Liyou; He, Zhili; Zhou, Jizhong

    2008-09-30

    Functional gene arrays (FGA) are microarrays that contain probes for genes encoding proteins or enzymes involved in functions of interest and allow for the study of thousands of genes at one time. The most comprehensive FGA to date is the GeoChip, which contains ~;;24,000 probes for ~;;10,000 genes involved in the geochemical cycling of C, N, P, and S, as well as genes involved in metal resistance and reduction and contaminant degradation. This chapter details the methods necessary for GeoChip analysis. Methods covered include preparation of DNA (whole community genome amplification and labeling), array setup (prehybridization steps), hybridization (sample and hybridization buffers), and post hybridization steps (slide washing and array scanning).

  9. Functional neuroanatomy of auditory scene analysis in Alzheimer's disease.

    Science.gov (United States)

    Golden, Hannah L; Agustus, Jennifer L; Goll, Johanna C; Downey, Laura E; Mummery, Catherine J; Schott, Jonathan M; Crutch, Sebastian J; Warren, Jason D

    2015-01-01

    Auditory scene analysis is a demanding computational process that is performed automatically and efficiently by the healthy brain but vulnerable to the neurodegenerative pathology of Alzheimer's disease. Here we assessed the functional neuroanatomy of auditory scene analysis in Alzheimer's disease using the well-known 'cocktail party effect' as a model paradigm whereby stored templates for auditory objects (e.g., hearing one's spoken name) are used to segregate auditory 'foreground' and 'background'. Patients with typical amnestic Alzheimer's disease (n = 13) and age-matched healthy individuals (n = 17) underwent functional 3T-MRI using a sparse acquisition protocol with passive listening to auditory stimulus conditions comprising the participant's own name interleaved with or superimposed on multi-talker babble, and spectrally rotated (unrecognisable) analogues of these conditions. Name identification (conditions containing the participant's own name contrasted with spectrally rotated analogues) produced extensive bilateral activation involving superior temporal cortex in both the AD and healthy control groups, with no significant differences between groups. Auditory object segregation (conditions with interleaved name sounds contrasted with superimposed name sounds) produced activation of right posterior superior temporal cortex in both groups, again with no differences between groups. However, the cocktail party effect (interaction of own name identification with auditory object segregation processing) produced activation of right supramarginal gyrus in the AD group that was significantly enhanced compared with the healthy control group. The findings delineate an altered functional neuroanatomical profile of auditory scene analysis in Alzheimer's disease that may constitute a novel computational signature of this neurodegenerative pathology.

  10. Functional neuroanatomy of auditory scene analysis in Alzheimer's disease

    Directory of Open Access Journals (Sweden)

    Hannah L. Golden

    2015-01-01

    Full Text Available Auditory scene analysis is a demanding computational process that is performed automatically and efficiently by the healthy brain but vulnerable to the neurodegenerative pathology of Alzheimer's disease. Here we assessed the functional neuroanatomy of auditory scene analysis in Alzheimer's disease using the well-known ‘cocktail party effect’ as a model paradigm whereby stored templates for auditory objects (e.g., hearing one's spoken name are used to segregate auditory ‘foreground’ and ‘background’. Patients with typical amnestic Alzheimer's disease (n = 13 and age-matched healthy individuals (n = 17 underwent functional 3T-MRI using a sparse acquisition protocol with passive listening to auditory stimulus conditions comprising the participant's own name interleaved with or superimposed on multi-talker babble, and spectrally rotated (unrecognisable analogues of these conditions. Name identification (conditions containing the participant's own name contrasted with spectrally rotated analogues produced extensive bilateral activation involving superior temporal cortex in both the AD and healthy control groups, with no significant differences between groups. Auditory object segregation (conditions with interleaved name sounds contrasted with superimposed name sounds produced activation of right posterior superior temporal cortex in both groups, again with no differences between groups. However, the cocktail party effect (interaction of own name identification with auditory object segregation processing produced activation of right supramarginal gyrus in the AD group that was significantly enhanced compared with the healthy control group. The findings delineate an altered functional neuroanatomical profile of auditory scene analysis in Alzheimer's disease that may constitute a novel computational signature of this neurodegenerative pathology.

  11. Influence of Type of Frequency Weighting Function On VDV Analysis

    Science.gov (United States)

    Kowalska-Koczwara, Alicja; Stypuła, Krzysztof

    2017-10-01

    Transport vibrations are the subject of many research, mostly their influence on structural elements of the building is investigated. However, nowadays, especially in the centres of large cities were apartments, residential buildings are closer to the transport vibration sources, an increasing attention is given to providing vibrational comfort to humans in buildings. Currently, in most countries, two main methods of evaluation are used: root mean squared method (RMS) and vibration dose value (VDV). In this article, VDV method is presented and the analysis of the weighting functions selection on value of VDV is made. Measurements required for the analysis were made in Krakow, on masonry, residential, two storey building located in the city centre. The building is subjected into two transport vibration sources: tram passages and vehicle passages on very close located road. Measurement points were located on the basement wall at ground level to control the excitation and in the middle of the floor on the highest storey (in the place where people percept vibration). The room chosen for measurements is located closest to the transport excitation sources. During the measurements, 25 vibration events were recorded and analysed. VDV values were calculated for three different weighting functions according to standard: ISO 2631-1, ISO 2631-2 and BS-6841. Differences in VDV values are shown, but also influence of the weighting function selection on result of evaluation is also presented. VDV analysis was performed not only for the individual vibration event but also all day and night vibration exposure were calculated using formulas contained in the annex to the standard BS-6841. It is demonstrated that, although there are differences in the values of VDV, an influence on all day and night exposure is no longer so significant.

  12. Singularity theory and some problems of functional analysis

    CERN Document Server

    1992-01-01

    The emergence of singularity theory marks the return of mathematics to the study of the simplest analytical objects: functions, graphs, curves, surfaces. The modern singularity theory for smooth mappings, which is currently undergoing intensive development, can be thought of as a crossroad where the most abstract topics (such as algebraic and differential geometry and topology, complex analysis, invariant theory, and Lie group theory) meet the most applied topics (such as dynamical systems, mathematical physics, geometrical optics, mathematical economics, and control theory). The papers in thi

  13. Alternative Equation on Magnetic Pair Distribution Function for Quantitative Analysis

    Science.gov (United States)

    Kodama, Katsuaki; Ikeda, Kazutaka; Shamoto, Shin-ichi; Otomo, Toshiya

    2017-12-01

    We derive an alternative equation of magnetic pair distribution function (mPDF) related to the mPDF equation given in a preceding study [B. A. Frandsen, X. Yang, and S. J. L. Billinge, https://doi.org/10.1107/S2053273313033081" xlink:type="simple">Acta Crystallogr., Sect. A 70, 3 (2014)] for quantitative analysis of realistic experimental data. The additional term related to spontaneous magnetization included in the equation is particularly important for the mPDF analysis of ferromagnetic materials. Quantitative estimation of mPDF from neutron diffraction data is also shown. The experimental mPDFs estimated from the neutron diffraction data of the ferromagnet MnSb and the antiferromagnet MnF2 are quantitatively consistent with the mPDFs calculated using the presented equation.

  14. The analysis of gastric function using computational techniques

    CERN Document Server

    Young, P

    2002-01-01

    The work presented in this thesis was carried out at the Magnetic Resonance Centre, Department of Physics and Astronomy, University of Nottingham, between October 1996 and June 2000. This thesis describes the application of computerised techniques to the analysis of gastric function, in relation to Magnetic Resonance Imaging data. The implementation of a computer program enabling the measurement of motility in the lower stomach is described in Chapter 6. This method allowed the dimensional reduction of multi-slice image data sets into a 'Motility Plot', from which the motility parameters - the frequency, velocity and depth of contractions - could be measured. The technique was found to be simple, accurate and involved substantial time savings, when compared to manual analysis. The program was subsequently used in the measurement of motility in three separate studies, described in Chapter 7. In Study 1, four different meal types of varying viscosity and nutrient value were consumed by 12 volunteers. The aim of...

  15. Real analysis foundations and functions of one variable

    CERN Document Server

    Laczkovich, Miklós

    2015-01-01

    Based on courses given at Eötvös Loránd University (Hungary) over the past 30 years, this introductory textbook develops the central concepts of the analysis of functions of one variable - systematically, with many examples and illustrations, and in a manner that builds upon, and sharpens, the students' mathematical intuition. The modular organization of the book makes it adaptable for either semester or year-long introductory courses, while the wealth of material allows for it to be used at various levels of student sophistication in all programs where analysis is a part of the curriculum, including teachers' education. In the spirit of learning-by-doing, Real Analysis includes more than 500 engaging exercises for the student keen on mastering the basics of analysis. There are frequent hints and occasional complete solutions provided for the more challenging exercises making it an ideal choice for independent study. The book includes a solid grounding in the basics of logic and proofs, sets, and real numb...

  16. Diagnostics of subtropical plants functional state by cluster analysis

    Directory of Open Access Journals (Sweden)

    Oksana Belous

    2016-05-01

    Full Text Available The article presents an application example of statistical methods for data analysis on diagnosis of the adaptive capacity of subtropical plants varieties. We depicted selection indicators and basic physiological parameters that were defined as diagnostic. We used evaluation on a set of parameters of water regime, there are: determination of water deficit of the leaves, determining the fractional composition of water and detection parameters of the concentration of cell sap (CCS (for tea culture flushes. These settings are characterized by high liability and high responsiveness to the effects of many abiotic factors that determined the particular care in the selection of plant material for analysis and consideration of the impact on sustainability. On the basis of the experimental data calculated the coefficients of pair correlation between climatic factors and used physiological indicators. The result was a selection of physiological and biochemical indicators proposed to assess the adaptability and included in the basis of methodical recommendations on diagnostics of the functional state of the studied cultures. Analysis of complex studies involving a large number of indicators is quite difficult, especially does not allow to quickly identify the similarity of new varieties for their adaptive responses to adverse factors, and, therefore, to set general requirements to conditions of cultivation. Use of cluster analysis suggests that in the analysis of only quantitative data; define a set of variables used to assess varieties (and the more sampling, the more accurate the clustering will happen, be sure to ascertain the measure of similarity (or difference between objects. It is shown that the identification of diagnostic features, which are subjected to statistical processing, impact the accuracy of the varieties classification. Selection in result of the mono-clusters analysis (variety tea Kolhida; hazelnut Lombardsky red; variety kiwi Monty

  17. Implicit functions and solution mappings a view from variational analysis

    CERN Document Server

    Dontchev, Asen L

    2014-01-01

    The implicit function theorem is one of the most important theorems in analysis and its many variants are basic tools in partial differential equations and numerical analysis. This second edition of Implicit Functions and Solution Mappings presents an updated and more complete picture of the field by including solutions of problems that have been solved since the first edition was published, and places old and new results in a broader perspective. The purpose of this self-contained work is to provide a reference on the topic and to provide a unified collection of a number of results which are currently scattered throughout the literature. Updates to this edition include new sections in almost all chapters, new exercises and examples, updated commentaries to chapters and an enlarged index and references section. From reviews of the first edition: “The book commences with a helpful context-setting preface followed by six chapters. Each chapter starts with a useful preamble and concludes with a careful and ins...

  18. Sensitivity analysis of near-infrared functional lymphatic imaging

    Science.gov (United States)

    Weiler, Michael; Kassis, Timothy; Dixon, J. Brandon

    2012-06-01

    Near-infrared imaging of lymphatic drainage of injected indocyanine green (ICG) has emerged as a new technology for clinical imaging of lymphatic architecture and quantification of vessel function, yet the imaging capabilities of this approach have yet to be quantitatively characterized. We seek to quantify its capabilities as a diagnostic tool for lymphatic disease. Imaging is performed in a tissue phantom for sensitivity analysis and in hairless rats for in vivo testing. To demonstrate the efficacy of this imaging approach to quantifying immediate functional changes in lymphatics, we investigate the effects of a topically applied nitric oxide (NO) donor glyceryl trinitrate ointment. Premixing ICG with albumin induces greater fluorescence intensity, with the ideal concentration being 150 μg/mL ICG and 60 g/L albumin. ICG fluorescence can be detected at a concentration of 150 μg/mL as deep as 6 mm with our system, but spatial resolution deteriorates below 3 mm, skewing measurements of vessel geometry. NO treatment slows lymphatic transport, which is reflected in increased transport time, reduced packet frequency, reduced packet velocity, and reduced effective contraction length. NIR imaging may be an alternative to invasive procedures measuring lymphatic function in vivo in real time.

  19. ANALYSIS OF STUDENTS’ LEARNING OBSTACLES ON LEARNING INVERS FUNCTION MATERIAL

    Directory of Open Access Journals (Sweden)

    Krisna Satrio Perbowo

    2017-09-01

    Full Text Available This research is based on the presence of obstacle in learning mathematics on inverse function. This research aims to analyze the learning obstacle, to know the types of error that is suffered by the students in learning inverse function. Kind of this kualitative research descriptive with data triangulation. The research subjects are high school students which is contained of 74 students and was taken 6 students to be main sample. The data of students’ error is obtained from the writen test result, the students’ false answers are identified into the type of error. Then it was chosen several students to be interviewed. Which the analysis result finding data in this research showed there are 4 types of errors, which are concept error, procedure error, counting error and concluding error. An obstacle which appear in learning inverse function is influenced by two factors, i.e internal factor and eksternal factor. Internal factor is showed by the students’ motivation in following learning and students’ skill in receiving learning material. While the eksternal factor is showed by the curriculum which applied in school with acceleration class caused many narrow learning time, teaching materials that is less complete with the discussion of question sample.

  20. A multivariate analysis of serum nutrient levels and lung function

    Directory of Open Access Journals (Sweden)

    Smit Henriette A

    2008-09-01

    Full Text Available Abstract Background There is mounting evidence that estimates of intakes of a range of dietary nutrients are related to both lung function level and rate of decline, but far less evidence on the relation between lung function and objective measures of serum levels of individual nutrients. The aim of this study was to conduct a comprehensive examination of the independent associations of a wide range of serum markers of nutritional status with lung function, measured as the one-second forced expiratory volume (FEV1. Methods Using data from the Third National Health and Nutrition Examination Survey, a US population-based cross-sectional study, we investigated the relation between 21 serum markers of potentially relevant nutrients and FEV1, with adjustment for potential confounding factors. Systematic approaches were used to guide the analysis. Results In a mutually adjusted model, higher serum levels of antioxidant vitamins (vitamin A, beta-cryptoxanthin, vitamin C, vitamin E, selenium, normalized calcium, chloride, and iron were independently associated with higher levels of FEV1. Higher concentrations of potassium and sodium were associated with lower FEV1. Conclusion Maintaining higher serum concentrations of dietary antioxidant vitamins and selenium is potentially beneficial to lung health. In addition other novel associations found in this study merit further investigation.

  1. IMAGING OF BRAIN FUNCTION BASED ON THE ANALYSIS OF FUNCTIONAL CONNECTIVITY - IMAGING ANALYSIS OF BRAIN FUNCTION BY FMRI AFTER ACUPUNCTURE AT LR3 IN HEALTHY INDIVIDUALS.

    Science.gov (United States)

    Zheng, Yu; Wang, Yuying; Lan, Yujun; Qu, Xiaodong; Lin, Kelin; Zhang, Jiping; Qu, Shanshan; Wang, Yanjie; Tang, Chunzhi; Huang, Yong

    2016-01-01

    This Study observed the relevant brain areas activated by acupuncture at the Taichong acupoint (LR3) and analyzed the functional connectivity among brain areas using resting state functional magnetic resonance imaging (fMRI) to explore the acupoint specificity of the Taichong acupoint. A total of 45 healthy subjects were randomly divided into the Taichong (LR3) group, sham acupuncture group and sham acupoint group. Subjects received resting state fMRI before acupuncture, after true (sham) acupuncture in each group. Analysis of changes in connectivity among the brain areas was performed using the brain functional connectivity method. The right cerebrum temporal lobe was selected as the seed point to analyze the functional connectivity. It had a functional connectivity with right cerebrum superior frontal gyrus, limbic lobe cingulate gyrus and left cerebrum inferior temporal gyrus (BA 37), inferior parietal lobule compared by before vs. after acupuncture at LR3, and right cerebrum sub-lobar insula and left cerebrum middle frontal gyrus, medial frontal gyrus compared by true vs. sham acupuncture at LR3, and right cerebrum occipital lobe cuneus, occipital lobe sub-gyral, parietal lobe precuneus and left cerebellum anterior lobe culmen by acupuncture at LR3 vs. sham acupoint. Acupuncture at LR3 mainly specifically activated the brain functional network that participates in visual function, associative function, and emotion cognition, which are similar to the features on LR3 in tradition Chinese medicine. These brain areas constituted a neural network structure with specific functions that had specific reference values for the interpretation of the acupoint specificity of the Taichong acupoint.

  2. Memory-efficient analysis of dense functional connectomes

    Directory of Open Access Journals (Sweden)

    Kristian Loewe

    2016-11-01

    Full Text Available The functioning of the human brain relies on the interplay and integration of numerous individual units within a complex network. To identify network configurations characteristic of specific cognitive tasks or mental illnesses, functional connectomes can be constructed based on the assessment of synchronous fMRI activity at separate brain sites, and then analyzed using graph-theoretical concepts. In most previous studies, relatively coarse parcellations of the brain were used to define regions as graphical nodes. Such parcellated connectomes are highly dependent on parcellation quality because regional and functional boundaries need to be relatively consistent for the results to be interpretable. In contrast, dense connectomes are not subject to this limitation, since the parcellation inherent to the data is used to define graphical nodes, also allowing for a more detailed spatial mapping of connectivity patterns. However, dense connectomes are associated with considerable computational demands in terms of both time and memory requirements. The memory required to explicitly store dense connectomes in main memory can render their analysis infeasible, especially when considering high-resolution data or analyses across multiple subjects or conditions. Here, we present an object-based matrix representation that achieves a very low memory footprint by computing matrix elements on demand instead of explicitly storing them. In doing so, memory required for a dense connectome is reduced to the amount needed to store the underlying time series data. Based on theoretical considerations and benchmarks, different matrix object implementations and additional programs (based on available Matlab functions and Matlab-based third-party software are compared with regard to their computational efficiency in terms of memory requirements and computation time. The matrix implementation based on on-demand computations has very low memory requirements thus enabling

  3. Tucker Tensor analysis of Matern functions in spatial statistics

    KAUST Repository

    Litvinenko, Alexander

    2017-11-18

    In this work, we describe advanced numerical tools for working with multivariate functions and for the analysis of large data sets. These tools will drastically reduce the required computing time and the storage cost, and, therefore, will allow us to consider much larger data sets or finer meshes. Covariance matrices are crucial in spatio-temporal statistical tasks, but are often very expensive to compute and store, especially in 3D. Therefore, we approximate covariance functions by cheap surrogates in a low-rank tensor format. We apply the Tucker and canonical tensor decompositions to a family of Matern- and Slater-type functions with varying parameters and demonstrate numerically that their approximations exhibit exponentially fast convergence. We prove the exponential convergence of the Tucker and canonical approximations in tensor rank parameters. Several statistical operations are performed in this low-rank tensor format, including evaluating the conditional covariance matrix, spatially averaged estimation variance, computing a quadratic form, determinant, trace, loglikelihood, inverse, and Cholesky decomposition of a large covariance matrix. Low-rank tensor approximations reduce the computing and storage costs essentially. For example, the storage cost is reduced from an exponential O(n^d) to a linear scaling O(drn), where d is the spatial dimension, n is the number of mesh points in one direction, and r is the tensor rank. Prerequisites for applicability of the proposed techniques are the assumptions that the data, locations, and measurements lie on a tensor (axes-parallel) grid and that the covariance function depends on a distance, ||x-y||.

  4. Discrete-Trial Functional Analysis and Functional Communication Training with Three Individuals with Autism and Severe Problem Behavior

    Science.gov (United States)

    Schmidt, Jonathan D.; Drasgow, Erik; Halle, James W.; Martin, Christian A.; Bliss, Sacha A.

    2014-01-01

    Discrete-trial functional analysis (DTFA) is an experimental method for determining the variables maintaining problem behavior in the context of natural routines. Functional communication training (FCT) is an effective method for replacing problem behavior, once identified, with a functionally equivalent response. We implemented these procedures…

  5. Assessment of Kidney Function After Allograft Transplantation by Texture Analysis.

    Science.gov (United States)

    Abbasian Ardakani, Ali; Mohammadi, Afshin; Khalili Najafabad, Bahareh; Abolghasemi, Jamileh

    2017-03-01

    Ultrasonography is the preferable imaging technique for monitoring and assessing complications in kidney allograft transplants. Computer-aided diagnostic system based on texture analysis in ultrasonographic imaging is recommended to identify changes in kidney function after allograft transplantation. A total of 61 biopsy-proven kidney allograft recipients (11 rejected and 50 unrejected) were assessed by a computer-aided diagnostic system. Up to 270 statistical texture features were extracted as descriptors for each region of interest in each recipient. Correlations of texture features with serum creatinine level and differences between rejected and unrejected allografts were analyzed. An area under the receiver operating characteristic curve was calculated for each significant texture feature. Linear discriminant analysis was employed to analyze significant features and increase discriminative power. Recipients were classified by the first nearest neighbor classifier. Fourteen texture features had a significant correlation with serum creatinine level and 16 were significantly different between the rejected and unrejected allografts, for which an area under the curve values were in the range of 0.575 for difference entropy S(4,0) to 0.676 for kurtosis. Using all 16 features, linear discriminant analysis indicated higher performance for classification of the two groups with an area under the curve of 0.975, which corresponded to a sensitivity of 90.9%, a specificity of 100%, a positive predictive value of 100%, and a negative predictive value of 98.0%. Texture analysis was a reliable method, with the potential for characterization, and can help physicians to diagnose kidney failure after transplantation on ultrasonographic imaging.

  6. Pair distribution function analysis applied to decahedral gold nanoparticles

    Science.gov (United States)

    Nakotte, H.; Silkwood, C.; Page, K.; Wang, H.-W.; Olds, D.; Kiefer, B.; Manna, S.; Karpov, D.; Fohtung, E.; Fullerton, E. E.

    2017-11-01

    The five-fold symmetry of face-centered cubic (fcc) derived nanoparticles is inconsistent with the translational symmetry of a Bravais lattice and generally explained by multiple twinning of a tetrahedral subunit about a (joint) symmetry axis, with or without structural modification to the fcc motif. Unlike in bulk materials, five-fold twinning in cubic nanoparticles is common and strongly affects their structural, chemical, and electronic properties. To test and verify theoretical approaches, it is therefore pertinent that the local structural features of such materials can be fully characterized. The small size of nanoparticles severely limits the application of traditional analysis techniques, such as Bragg diffraction. A complete description of the atomic arrangement in nanoparticles therefore requires a departure from the concept of translational symmetry, and prevents fully evaluating all the structural features experimentally. We describe how recent advances in instrumentation, together with the increasing power of computing, are shaping the development of alternative analysis methods of scattering data for nanostructures. We present the application of Debye scattering and pair distribution function (PDF) analysis towards modeling of the total scattering data for the example of decahedral gold nanoparticles. PDF measurements provide a statistical description of the pair correlations of atoms within a material, allowing one to evaluate the probability of finding two atoms within a given distance. We explored the sensitivity of existing synchrotron x-ray PDF instruments for distinguishing four different simple models for our gold nanoparticles: a multiply twinned fcc decahedron with either a single gap or multiple distributed gaps, a relaxed body-centered orthorhombic (bco) decahedron, and a hybrid decahedron. The data simulations of the models were then compared with experimental data from synchrotron x-ray total scattering. We present our experimentally

  7. Mode Shape Analysis of Multiple Cracked Functionally Graded Timoshenko Beams

    Directory of Open Access Journals (Sweden)

    Tran Van Lien

    Full Text Available Abstract The present paper addresses free vibration of multiple cracked Timoshenko beams made of Functionally Graded Material (FGM. Cracks are modeled by rotational spring of stiffness calculated from the crack depth and material properties vary according to the power law throughout the beam thickness. Governing equations for free vibration of the beam are formulated with taking into account actual position of the neutral plane. The obtained frequency equation and mode shapes are used for analysis of the beam mode shapes in dependence on the material and crack parameters. Numerical results validate usefulness of the proposed herein theory and show that mode shapes are good indication for detecting multiple cracks in Timoshenko FGM beams.

  8. INTERVIEW GUIDELINE FOR FUNCTIONAL BEHAVIOR ANALYSIS IN TRANSSEXUAL PERSONS

    Directory of Open Access Journals (Sweden)

    José Miguel Rodríguez Molina

    2013-05-01

    Full Text Available Transsexuality is an emerging phenomenon. There are therefore few psychological assessment tools for it. The purpose of this article is to show the professional clinical psychology and social intervention community a tool that could facilitate this task. We begin with a brief introduction to the phenomenon of transsexuality and psychological assessment in this field, which almost always concentrates on diagnosis or other variables, generally personality (personality traits, depression, anxiety, etc.. Then we approach the main problems found in a transsexual person during the transition. These problems are a potential or real source of psychological conflict. After this we briefly describe behavioral assessment which has been quite forgotten in this area. Finally, we propose a new instrument for this assessment. The main result is the Interview Guideline for Functional Behavior Sequence Analysis (FBSA. We conclude that there is a need for more behavior assessment in this field.

  9. Some Logical Metatheorems with Applications in Functional Analysis

    DEFF Research Database (Denmark)

    Kohlenbach, Ulrich

    2005-01-01

    In previous papers we have developed proof-theoretic techniques for extracting effective uniform bounds from large classes of ineffective existence proofs in functional analysis. Here `uniform' means independence from parameters in compact spaces. A recent case study in fixed-point theory...... systematically yielded uniformity even w.r.t. parameters in metrically bounded (but noncompact) subsets which had been known before only in special cases. In the present paper we prove general logical metatheorems which cover these applications to fixed-point theory as special cases but are not restricted...... to this area at all. Our theorems guarantee under general logical conditions such strong uniform versions of non-uniform existence statements. Moreover, they provide algorithms for actually extracting effective uniform bounds and transforming the original proof into one for the stronger uniformity result. Our...

  10. A longitudinal intergenerational analysis of executive functions during early childhood.

    Science.gov (United States)

    Cuevas, Kimberly; Deater-Deckard, Kirby; Kim-Spoon, Jungmeen; Wang, Zhe; Morasch, Katherine C; Bell, Martha Ann

    2014-03-01

    Despite the importance of executive function (EF) in both clinical and educational contexts, the aetiology of individual differences in early childhood EF remains poorly understood. This study provides the first longitudinal intergenerational analysis of mother-child EF associations during early childhood. A group of children and their mothers (n = 62) completed age-appropriate EF tasks. Mother and child EFs were modestly correlated by 24 months of age, and this association was stable through 48 months. Importantly, maternal-child EF associations were still robust after controlling for verbal ability (potential indicator of verbal/crystallized intelligence) and maternal education (correlate of socio-economic status and verbal intelligence). Potential implications of these findings as well as underlying mechanisms of the maternal-child EF association (gene-environment interplay) are discussed. © 2013 The British Psychological Society.

  11. Functional Principal Component Analysis and Randomized Sparse Clustering Algorithm for Medical Image Analysis

    Science.gov (United States)

    Lin, Nan; Jiang, Junhai; Guo, Shicheng; Xiong, Momiao

    2015-01-01

    Due to the advancement in sensor technology, the growing large medical image data have the ability to visualize the anatomical changes in biological tissues. As a consequence, the medical images have the potential to enhance the diagnosis of disease, the prediction of clinical outcomes and the characterization of disease progression. But in the meantime, the growing data dimensions pose great methodological and computational challenges for the representation and selection of features in image cluster analysis. To address these challenges, we first extend the functional principal component analysis (FPCA) from one dimension to two dimensions to fully capture the space variation of image the signals. The image signals contain a large number of redundant features which provide no additional information for clustering analysis. The widely used methods for removing the irrelevant features are sparse clustering algorithms using a lasso-type penalty to select the features. However, the accuracy of clustering using a lasso-type penalty depends on the selection of the penalty parameters and the threshold value. In practice, they are difficult to determine. Recently, randomized algorithms have received a great deal of attentions in big data analysis. This paper presents a randomized algorithm for accurate feature selection in image clustering analysis. The proposed method is applied to both the liver and kidney cancer histology image data from the TCGA database. The results demonstrate that the randomized feature selection method coupled with functional principal component analysis substantially outperforms the current sparse clustering algorithms in image cluster analysis. PMID:26196383

  12. Functional Principal Component Analysis and Randomized Sparse Clustering Algorithm for Medical Image Analysis.

    Directory of Open Access Journals (Sweden)

    Nan Lin

    Full Text Available Due to the advancement in sensor technology, the growing large medical image data have the ability to visualize the anatomical changes in biological tissues. As a consequence, the medical images have the potential to enhance the diagnosis of disease, the prediction of clinical outcomes and the characterization of disease progression. But in the meantime, the growing data dimensions pose great methodological and computational challenges for the representation and selection of features in image cluster analysis. To address these challenges, we first extend the functional principal component analysis (FPCA from one dimension to two dimensions to fully capture the space variation of image the signals. The image signals contain a large number of redundant features which provide no additional information for clustering analysis. The widely used methods for removing the irrelevant features are sparse clustering algorithms using a lasso-type penalty to select the features. However, the accuracy of clustering using a lasso-type penalty depends on the selection of the penalty parameters and the threshold value. In practice, they are difficult to determine. Recently, randomized algorithms have received a great deal of attentions in big data analysis. This paper presents a randomized algorithm for accurate feature selection in image clustering analysis. The proposed method is applied to both the liver and kidney cancer histology image data from the TCGA database. The results demonstrate that the randomized feature selection method coupled with functional principal component analysis substantially outperforms the current sparse clustering algorithms in image cluster analysis.

  13. [Functional analysis of the thalamocortical pathways in eye movements].

    Science.gov (United States)

    Kunimatsu, Jun; Tanaka, Masaki

    2011-08-01

    Although the roles of the thalamocortical pathways in somatic movements are well documented, their roles in eye movements have only recently been examined. The oculomotor-related areas in the frontal cortex receive inputs from the basal ganglia and the cerebellum via the thalamus. Consistent with this, neurons in the paralaminar part of the ventrolateral (VL), ventroanterior (VA), and mediodorsal (MD) nuclei and those in the intralaminar nuclei exhibit a variety of eye movement-related responses. To date, the thalamocortical pathways are known to play at least 2 roles in eye movements. First, they are involved in the generation of volitional, but not reactive, saccades. Thalamic neurons discharge during anti-saccades, which are known to be impaired in several neurological and psychiatric disorders, such as Parkinson's disease, attention deficit/hyperactivity disorder, and schizophrenia. In addition, neurons in the thalamus also exhibit a gradual increase in firing rate that predicts the timing of self-initiated saccades. Recent inactivation experiments have established the causal roles of these thalamic signals in the generation of volitional saccades. Second, the thalamocortical pathways transmit the efference copy signals for eye movements. During inactivation of the MD thalamus, which relays signals from the superior colliculus to the frontal eye field (FEF), the accuracy of the saccade is reduced in tasks requiring efference copy signals. In addition, inactivation of the same pathways reduces the predictive visual response associated with saccades in neurons in the FEF. Moreover the VL thalamus has been reported to play a role in monitoring smooth pursuit. While the functional analysis of thalamocortical pathways in eye movements is just a beginning, the anatomical data suggest their important roles. Analysis of eye movement control may shed light on the functions of the thalamocortical pathways in general, and may reveal the neural mechanisms of cerebro

  14. Fast dynamics perturbation analysis for prediction of protein functional sites

    Directory of Open Access Journals (Sweden)

    Cohn Judith D

    2008-01-01

    Full Text Available Abstract Background We present a fast version of the dynamics perturbation analysis (DPA algorithm to predict functional sites in protein structures. The original DPA algorithm finds regions in proteins where interactions cause a large change in the protein conformational distribution, as measured using the relative entropy Dx. Such regions are associated with functional sites. Results The Fast DPA algorithm, which accelerates DPA calculations, is motivated by an empirical observation that Dx in a normal-modes model is highly correlated with an entropic term that only depends on the eigenvalues of the normal modes. The eigenvalues are accurately estimated using first-order perturbation theory, resulting in a N-fold reduction in the overall computational requirements of the algorithm, where N is the number of residues in the protein. The performance of the original and Fast DPA algorithms was compared using protein structures from a standard small-molecule docking test set. For nominal implementations of each algorithm, top-ranked Fast DPA predictions overlapped the true binding site 94% of the time, compared to 87% of the time for original DPA. In addition, per-protein recall statistics (fraction of binding-site residues that are among predicted residues were slightly better for Fast DPA. On the other hand, per-protein precision statistics (fraction of predicted residues that are among binding-site residues were slightly better using original DPA. Overall, the performance of Fast DPA in predicting ligand-binding-site residues was comparable to that of the original DPA algorithm. Conclusion Compared to the original DPA algorithm, the decreased run time with comparable performance makes Fast DPA well-suited for implementation on a web server and for high-throughput analysis.

  15. BRET biosensor analysis of receptor tyrosine kinase functionality

    Directory of Open Access Journals (Sweden)

    Sana eSiddiqui

    2013-04-01

    Full Text Available Bioluminescence resonance energy transfer (BRET is an improved version of earlier resonance energy transfer technologies used for the analysis of biomolecular protein interaction. BRET analysis can be applied to many transmembrane receptor classes, however the majority of the early published literature on BRET has focused on G protein-coupled receptor (GPCR research. In contrast, there is limited scientific literature using BRET to investigate receptor tyrosine kinase (RTK activity. This limited investigation is surprising as RTKs often employ dimerization as a key factor in their activation, as well as being important therapeutic targets in medicine, especially in the cases of cancer, diabetes, neurodegenerative and respiratory conditions. In this review, we consider an array of studies pertinent to RTKs and other non-GPCR receptor protein-protein signaling interactions; more specifically we discuss receptor-protein interactions involved in the transmission of signaling communication. We have provided an overview of functional BRET studies associated with the receptor tyrosine kinase (RTK super family involving: neurotrophic receptors (e.g. tropomyosin-related kinase (Trk and p75 neurotrophin receptor (p75NTR; insulinotropic receptors (e.g. insulin receptor (IR and insulin-like growth factor receptor (IGFR and growth factor receptors (e.g. ErbB receptors including the EGFR, the fibroblast growth factor receptor (FGFR, the vascular endothelial growth factor receptor (VEGFR and the c-kit and platelet-derived growth factor receptor (PDGFR. In addition, we review BRET-mediated studies of other tyrosine kinase-associated receptors including cytokine receptors, i.e. leptin receptor (OB-R and the growth hormone receptor (GHR. It is clear even from the relatively sparse experimental RTK BRET evidence that there is tremendous potential for this technological application for the functional investigation of RTK biology.

  16. Functional Analysis of HIV/AIDS Stigma: Consensus or Divergence?

    Science.gov (United States)

    Hosseinzadeh, Hassan; Hossain, Syeda Zakia

    2011-01-01

    Functional theory proposes that attitudes may serve a variety of purposes for individuals. This study aimed to determine whether stigmatized attitudes toward HIV/AIDS serve the same function for all (consensus function) or serve different functions for different individuals (divergence function) by assessing various aspects of HIV/AIDS stigma…

  17. Density functional steric analysis of linear and branched alkanes.

    Science.gov (United States)

    Ess, Daniel H; Liu, Shubin; De Proft, Frank

    2010-12-16

    Branched alkane hydrocarbons are thermodynamically more stable than straight-chain linear alkanes. This thermodynamic stability is also manifest in alkane bond separation energies. To understand the physical differences between branched and linear alkanes, we have utilized a novel density functional theory (DFT) definition of steric energy based on the Weizäcker kinetic energy. Using the M06-2X functional, the total DFT energy was partitioned into a steric energy term (E(s)[ρ]), an electrostatic energy term (E(e)[ρ]), and a fermionic quantum energy term (E(q)[ρ]). This analysis revealed that branched alkanes have less (destabilizing) DFT steric energy than linear alkanes. The lower steric energy of branched alkanes is mitigated by an equal and opposite quantum energy term that contains the Pauli component of the kinetic energy and exchange-correlation energy. Because the steric and quantum energy terms cancel, this leaves the electrostatic energy term that favors alkane branching. Electrostatic effects, combined with correlation energy, explains why branched alkanes are more stable than linear alkanes.

  18. Correlation between videogame mechanics and executive functions through EEG analysis.

    Science.gov (United States)

    Mondéjar, Tania; Hervás, Ramón; Johnson, Esperanza; Gutierrez, Carlos; Latorre, José Miguel

    2016-10-01

    This paper addresses a different point of view of videogames, specifically serious games for health. This paper contributes to that area with a multidisciplinary perspective focus on neurosciences and computation. The experiment population has been pre-adolescents between the ages of 8 and 12 without any cognitive issues. The experiment consisted in users playing videogames as well as performing traditional psychological assessments; during these tasks the frontal brain activity was evaluated. The main goal was to analyse how the frontal lobe of the brain (executive function) works in terms of prominent cognitive skills during five types of game mechanics widely used in commercial videogames. The analysis was made by collecting brain signals during the two phases of the experiment, where the signals were analysed with an electroencephalogram neuroheadset. The validated hypotheses were whether videogames can develop executive functioning and if it was possible to identify which kind of cognitive skills are developed during each kind of typical videogame mechanic. The results contribute to the design of serious games for health purposes on a conceptual level, particularly in support of the diagnosis and treatment of cognitive-related pathologies. Copyright © 2016 Elsevier Inc. All rights reserved.

  19. A meta-analysis of parton distribution functions

    Science.gov (United States)

    Gao, Jun; Nadolsky, Pavel

    2014-07-01

    A "meta-analysis" is a method for comparison and combination of nonperturbative parton distribution functions (PDFs) in a nucleon obtained with heterogeneous procedures and assumptions. Each input parton distribution set is converted into a "meta-parametrization" based on a common functional form. By analyzing parameters of the meta-parametrizations from all input PDF ensembles, a combined PDF ensemble can be produced that has a smaller total number of PDF member sets than the original ensembles. The meta-parametrizations simplify the computation of the PDF uncertainty in theoretical predictions and provide an alternative to the 2010 PDF4LHC convention for combination of PDF uncertainties. As a practical example, we construct a META ensemble for computation of QCD observables at the Large Hadron Collider using the next-to-next-to-leading order PDF sets from CTEQ, MSTW, and NNPDF groups as the input. The META ensemble includes a central set that reproduces the average of LHC predictions based on the three input PDF ensembles and Hessian eigenvector sets for computing the combined PDF+α s uncertainty at a common QCD coupling strength of 0.118.

  20. Sexing California gulls using morphometrics and discriminant function analysis

    Science.gov (United States)

    Herring, Garth; Ackerman, Joshua T.; Eagles-Smith, Collin A.; Takekawa, John Y.

    2010-01-01

    A discriminant function analysis (DFA) model was developed with DNA sex verification so that external morphology could be used to sex 203 adult California Gulls (Larus californicus) in San Francisco Bay (SFB). The best model was 97% accurate and included head-to-bill length, culmen depth at the gonys, and wing length. Using an iterative process, the model was simplified to a single measurement (head-to-bill length) that still assigned sex correctly 94% of the time. A previous California Gull sex determination model developed for a population in Wyoming was then assessed by fitting SFB California Gull measurement data to the Wyoming model; this new model failed to converge on the same measurements as those originally used by the Wyoming model. Results from the SFB discriminant function model were compared to the Wyoming model results (by using SFB data with the Wyoming model); the SFB model was 7% more accurate for SFB California gulls. The simplified DFA model (head-to-bill length only) provided highly accurate results (94%) and minimized the measurements and time required to accurately sex California Gulls.

  1. Novel axolotl cardiac function analysis method using magnetic resonance imaging.

    Directory of Open Access Journals (Sweden)

    Pedro Gomes Sanches

    Full Text Available The salamander axolotl is capable of complete regeneration of amputated heart tissue. However, non-invasive imaging tools for assessing its cardiac function were so far not employed. In this study, cardiac magnetic resonance imaging is introduced as a non-invasive technique to image heart function of axolotls. Three axolotls were imaged with magnetic resonance imaging using a retrospectively gated Fast Low Angle Shot cine sequence. Within one scanning session the axolotl heart was imaged three times in all planes, consecutively. Heart rate, ejection fraction, stroke volume and cardiac output were calculated using three techniques: (1 combined long-axis, (2 short-axis series, and (3 ultrasound (control for heart rate only. All values are presented as mean ± standard deviation. Heart rate (beats per minute among different animals was 32.2±6.0 (long axis, 30.4±5.5 (short axis and 32.7±4.9 (ultrasound and statistically similar regardless of the imaging method (p > 0.05. Ejection fraction (% was 59.6±10.8 (long axis and 48.1±11.3 (short axis and it differed significantly (p = 0.019. Stroke volume (μl/beat was 133.7±33.7 (long axis and 93.2±31.2 (short axis, also differed significantly (p = 0.015. Calculations were consistent among the animals and over three repeated measurements. The heart rate varied depending on depth of anaesthesia. We described a new method for defining and imaging the anatomical planes of the axolotl heart and propose one of our techniques (long axis analysis may prove useful in defining cardiac function in regenerating axolotl hearts.

  2. Orthogonal analysis of functional gold nanoparticles for biomedical applications.

    Science.gov (United States)

    Tsai, De-Hao; Lu, Yi-Fu; DelRio, Frank W; Cho, Tae Joon; Guha, Suvajyoti; Zachariah, Michael R; Zhang, Fan; Allen, Andrew; Hackley, Vincent A

    2015-11-01

    We report a comprehensive strategy based on implementation of orthogonal measurement techniques to provide critical and verifiable material characteristics for functionalized gold nanoparticles (AuNPs) used in biomedical applications. Samples were analyzed before and after ≈50 months of cold storage (≈4 °C). Biomedical applications require long-term storage at cold temperatures, which could have an impact on AuNP therapeutics. Thiolated polyethylene glycol (SH-PEG)-conjugated AuNPs with different terminal groups (methyl-, carboxylic-, and amine-) were chosen as a model system due to their high relevancy in biomedical applications. Electrospray-differential mobility analysis, asymmetric-flow field flow fractionation, transmission electron microscopy, scanning electron microscopy, atomic force microscopy, inductively coupled plasma mass spectrometry, and small-angle X-ray scattering were employed to provide both complementary and orthogonal information on (1) particle size and size distribution, (2) particle concentrations, (3) molecular conjugation properties (i.e., conformation and surface packing density), and (4) colloidal stability. Results show that SH-PEGs were conjugated on the surface of AuNPs to form a brush-like polymer corona. The surface packing density of SH-PEG was ≈0.42 nm(-2) for the methyl-PEG-SH AuNPs, ≈0.26 nm(-2) for the amine-SH-PEG AuNPs, and ≈0.18 nm(-2) for the carboxylic-PEG-SH AuNPs before cold storage, approximately 10 % of its theoretical maximum value. The conformation of surface-bound SH-PEGs was then estimated to be in an intermediate state between brush-like and random-coiled, based on the measured thicknesses in liquid and in dry states. By analyzing the change in particle size distribution and number concentration in suspension following cold storage, the long term colloidal stability of AuNPs was shown to be significantly improved via functionalization with SH-PEG, especially in the case of methyl-PEG-SH and carboxylic

  3. Analysis of reproductive function in persons exposed to chronic radiation

    Energy Technology Data Exchange (ETDEWEB)

    Kossenko, M.M.; Ostroumova, E.V.; Vyushkova, O.V. [Urals Research Center for Radiation Medicine, Chelyabinsk (Russian Federation)

    2000-05-01

    The purpose of the study was to analyze the reproductive function in individuals exposed to radiation in the riverside villages on the Techa in the Southern Urals. The exposure of the population, numbering 28000, occurred in 1950-1956 as a result of discharges into the river of radioactive wastes from the Mayak facility for processing weapon plutonium. The residents were exposed to chronic radiation, both external and internal. The range of exposure doses to gonads was sufficiently wide: 20-1270 mSv. However, the distribution of doses among the exposed individuals was ununiform, and the proportion of people whose dose was below 120 mGy accounted for 74%. The following characteristics of exposed women were analyzed: menstrual function, outcomes of pregnancy, birth rates, health status for newborns. The analysis of the menstrual function in exposed women showed that in persons exposed in childhood, menarche was registered at the age of 14.3 years, on the average (based on literature sources, menarche is attained at the age of 13 for unexposed population). The mean age at menopause was 47.9 years for exposed women (the respective mean value for Russia is 50.8 years). Pregnancy outcomes were analyzed in 9000 exposed women. The rate of medical and criminal abortions was estimated as 79 per 100 labors. The rate of spontaneous abortions for exposed women was slightly higher, 3.11%, than for controls, 2.30%; these difference, however, were statistically insignificant. The total loss of fetus or neonate (unfavorable outcomes of pregnancy: spontaneous abortions, stillbirths, early neonatal death) was estimated to be 4.58% at zero dose. Exposure to gonads at the dose 1 Sv, estimated using the above-indicated method, yielded 3% of additional unfavorable outcomes of pregnancy. It was shown, based on the analysis of birth rates for the Techa Cohort that they had not undergone any essential changes over the first 25 years of exposure compared to the respective coefficients for

  4. Synchrotron Radiation Pair Distribution Function Analysis of Gels in Cements

    Directory of Open Access Journals (Sweden)

    Ana Cuesta

    2017-10-01

    Full Text Available The analysis of atomic ordering in a nanocrystalline phase with small particle sizes, below 5 nm, is intrinsically complicated because of the lack of long-range order. Furthermore, the presence of additional crystalline phase(s may exacerbate the problem, as is the case in cement pastes. Here, we use the synchrotron pair distribution function (PDF chiefly to characterize the local atomic order of the nanocrystalline phases, gels, in cement pastes. We have used a multi r-range analysis approach, where the ~4–7 nm r-range allows determining the crystalline phase contents; the ~1–2.5 nm r-range is used to characterize the atomic ordering in the nanocrystalline component; and the ~0.2–1.0 nm r-range gives insights about additional amorphous components. Specifically, we have prepared four alite pastes with variable water contents, and the analyses showed that a defective tobermorite, Ca11Si9O28(OH2.8.5H2O, gave the best fit. Furthermore, the PDF analyses suggest that the calcium silicate hydrate gel is composed of this tobermorite and amorphous calcium hydroxide. Finally, this approach has been used to study alternative cements. The hydration of monocalcium aluminate and ye’elimite pastes yield aluminum hydroxide gels. PDF analyses show that these gels are constituted of nanocrystalline gibbsite, and the particle size can be as small as 2.5 nm.

  5. Empirical Green's function analysis of recent moderate events in California

    Science.gov (United States)

    Hough, S.E.

    2001-01-01

    I use seismic data from portable digital stations and the broadband Terrascope network in southern California to investigate radiated earthquake source spectra and discuss the results in light of previous studies on both static stress drop and apparent stress. Applying the empirical Green's function (EGF) method to two sets of M 4-6.1 events, I obtain deconvolved source-spectra estimates and corner frequencies. The results are consistent with an ??2 source model and constant Brune stress drop. However, consideration of the raw spectral shapes of the largest events provides evidence for a high-frequency decay more shallow than ??2. The intermediate (???f-1) slope cannot be explained plausibly with attenuation or site effects and is qualitatively consistent with a model incorporating directivity effects and a fractional stress-drop rupture process, as suggested by Haddon (1996). However, the results obtained in this study are not consistent with the model of Haddon (1996) in that the intermediate slope is not revealed with EGF analysis. This could reflect either bandwidth limitations inherent in EGF analysis or perhaps a rupture process that is not self-similar. I show that a model with an intermediate spectral decay can also reconcile the apparent discrepancy between the scaling of static stress drop and that of apparent stress drop for moderate-to-large events.

  6. Functions of several variables analysis applied in inventory management

    Directory of Open Access Journals (Sweden)

    Martina Janková

    2013-01-01

    Full Text Available In many cases a retailer is not capable of settling an invoice immediately upon receiving it and is given an option by the supplier to settle the invoice within a definite period. The retailer can sell the goods before the deadline, accumulate revenue and earn interest. If the retailer is not able to meet his obligations within the deadline, he is charged an interest. This paper introduces a newly constructed model which enables a retailer to set an optimal price of goods under permissible delay in payments, and to determine the maximum term of payment. The model is based on the assumption of time-dependent demand and has been developed for non-deteriorating goods. The paper further analyzes a situation in which the retailer sell all the goods in time, and a situation in which the deadline was not met. Theoretical results are demonstrated by an illustrative example. The authors of the paper used methods of analysis and synthesis, and the method of mathematical analysis (differential calculus of multivariable functions, solution of ordinary differential equations.The model suggested in the paper can be expanded in the future. One option is generalization of the model, allowing for the lack of goods, bulk discounts, etc.

  7. Functional analysis and modelling of vegetation: plant functional types in a mesocosmos experiment and a mechanistic model

    OpenAIRE

    Lehsten, Veiko

    2005-01-01

    The focus of this thesis lies on the functional analysis and modelling of vegetation. A statistical method for the optimisation of plant functional types is developed in the first part. The fourth corner method by Pierre Legendre et al. was adapted to the task of grouping of plant functional types. New null models are developed for this randomisation method and their statistical properties are investigated. The mechanistical model LEGOMODEL is used to simulate the succession of plant function...

  8. Transfer function analysis of baroreflex function in a rabbit model of endotoxic shock.

    Science.gov (United States)

    Tang, Collin H H; Chan, Gregory S H; Middleton, Paul M; Cave, Grant; Harvey, Martyn; Savkin, Andrey V; Lovell, Nigel H

    2009-01-01

    Sepsis is characterized by profound cardiovascular abnormalities which may result from the derangements in the arterial baroreflex system and other autonomic regulatory functions. In this study, a mechanically ventilated and anesthetized rabbit model of endotoxic shock was utilized to mimic the behaviors of the cardiovascular system in a sepsis patient. 13 adult New Zealand white rabbits were studied, with 8 of them injected with endotoxin and the remaining given saline solution as sham fluid. Measurements of heart period (RRi) and systolic blood pressure (SBP) were obtained pre-and post-intervention after a 90 minute period, which allowed spectral and cross-spectral analysis of heart rate and blood pressure variabilities to be performed. A significant increase of blood lactate level (p distributive shock. Based on this model, the novel findings were that in the low frequency (LF) and mid frequency (MF) bands, there was a decrease in coherence (p shock.

  9. Functional analysis of a cotton glucuronosyltransferase promoter in transgenic tobaccos.

    Science.gov (United States)

    Wu, Ai-Min; Lv, Shi-You; Liu, Jin-Yuan

    2007-02-01

    The 5' fragment (1 647 bp) of the cotton glucuronosyltransferase gene (GhGlcAT1) was transcriptionally fused to the beta-glucuronidase (GUS) gene, and functionally analyzed for important regulatory regions controlling gene expression in transgenic tobacco plants. GUS activity analysis revealed that the full-length promoter drives efficient expression of the GUS gene in the root cap, seed coat, pollen grains and trichomes. Exposure of the transgenic tobacco to various abiotic stresses showed that the promoter was mainly responsive to the sugars (glucose and sucrose) as well as gibberellic acid. Progressive upstream deletion analyses of the promoter showed that the region from -281 to +30 bp is sufficient to drive strong GUS expression in the trichomes of shoot, suggesting that the 311 bp region contains all cis-elements needed for trichome-specific expression. Furthermore, deletion analysis also revealed that the essential cis-element(s) for sucrose induction might be located between -635 and -281 bp. In addition, sequence analysis of the regulatory region indicated several conserved motifs among which some were shared with previously reported seed-specific elements and sugar-responsive elements, while others were related with trichome expression. These findings indicate that a 1 647-bp fragment of the cotton GhGlcAT1 promoter contains specific transcription regulatory elements, and provide clues about the roles of GhGlcAT1 in cotton fiber development. Further analyses of these elements will help to elucidate the molecular mechanisms regulating the expression of the GhGlcAT1 gene during fiber elongation.

  10. Photonic encryption : modeling and functional analysis of all optical logic.

    Energy Technology Data Exchange (ETDEWEB)

    Tang, Jason D.; Schroeppel, Richard Crabtree; Robertson, Perry J.

    2004-10-01

    and time delay characteristics. These 'black box' models are interconnected and cascaded in an encrypting/scrambling algorithm based on a study of candidate encryption algorithms. Demonstration circuits show how these logic elements can be used to form NAND, NOR, and XOR functions. This paper also presents functional analysis of a serial, low gate count demonstration algorithm suitable for scrambling/encryption using S-SEED devices.

  11. Functional brain imaging: an evidence-based analysis.

    Science.gov (United States)

    2006-01-01

    The objective of this analysis is to review a spectrum of functional brain imaging technologies to identify whether there are any imaging modalities that are more effective than others for various brain pathology conditions. This evidence-based analysis reviews magnetoencephalography (MEG), magnetic resonance spectroscopy (MRS), positron emission tomography (PET), and functional magnetic resonance imaging (fMRI) for the diagnosis or surgical management of the following conditions: Alzheimer's disease (AD), brain tumours, epilepsy, multiple sclerosis (MS), and Parkinson's disease (PD). TARGET POPULATION AND CONDITION Alzheimer's disease is a progressive, degenerative, neurologic condition characterized by cognitive impairment and memory loss. The Canadian Study on Health and Aging estimated that there will be 97,000 incident cases (about 60,000 women) of dementia (including AD) in Canada in 2006. In Ontario, there will be an estimated 950 new cases and 580 deaths due to brain cancer in 2006. Treatments for brain tumours include surgery and radiation therapy. However, one of the limitations of radiation therapy is that it damages tissue though necrosis and scarring. Computed tomography (CT) and magnetic resonance imaging (MRI) may not distinguish between radiation effects and resistant tissue, creating a potential role for functional brain imaging. Epilepsy is a chronic disorder that provokes repetitive seizures. In Ontario, the rate of epilepsy is estimated to be 5 cases per 1,000 people. Most people with epilepsy are effectively managed with drug therapy; but about 50% do not respond to drug therapy. Surgical resection of the seizure foci may be considered in these patients, and functional brain imaging may play a role in localizing the seizure foci. Multiple sclerosis is a progressive, inflammatory, demyelinating disease of the central nervous system (CNS). The cause of MS is unknown; however, it is thought to be due to a combination of etiologies, including

  12. Functional neuroanatomy of meditation: A review and meta-analysis of 78 functional neuroimaging investigations.

    Science.gov (United States)

    Fox, Kieran C R; Dixon, Matthew L; Nijeboer, Savannah; Girn, Manesh; Floman, James L; Lifshitz, Michael; Ellamil, Melissa; Sedlmeier, Peter; Christoff, Kalina

    2016-06-01

    Meditation is a family of mental practices that encompasses a wide array of techniques employing distinctive mental strategies. We systematically reviewed 78 functional neuroimaging (fMRI and PET) studies of meditation, and used activation likelihood estimation to meta-analyze 257 peak foci from 31 experiments involving 527 participants. We found reliably dissociable patterns of brain activation and deactivation for four common styles of meditation (focused attention, mantra recitation, open monitoring, and compassion/loving-kindness), and suggestive differences for three others (visualization, sense-withdrawal, and non-dual awareness practices). Overall, dissociable activation patterns are congruent with the psychological and behavioral aims of each practice. Some brain areas are recruited consistently across multiple techniques-including insula, pre/supplementary motor cortices, dorsal anterior cingulate cortex, and frontopolar cortex-but convergence is the exception rather than the rule. A preliminary effect-size meta-analysis found medium effects for both activations (d=0.59) and deactivations (d=-0.74), suggesting potential practical significance. Our meta-analysis supports the neurophysiological dissociability of meditation practices, but also raises many methodological concerns and suggests avenues for future research. Copyright © 2016 Elsevier Ltd. All rights reserved.

  13. Electronic Nose Functionality for Breath Gas Analysis during Parabolic Flight

    Science.gov (United States)

    Dolch, Michael E.; Hummel, Thomas; Fetter, Viktor; Helwig, Andreas; Lenic, Joachim; Moukhamedieva, Lana; Tsarkow, Dimitrij; Chouker, Alexander; Schelling, Gustav

    2017-06-01

    The presence of humans in space represents a constant threat for their health and safety. Environmental factors such as living in a closed confinement, as well as exposure to microgravity and radiation, are associated with significant changes in bone metabolism, muscular atrophy, and altered immune response, which has impacts on human performance and possibly results in severe illness. Thus, maintaining and monitoring of crew health status has the highest priority to ensure whole mission success. With manned deep space missions to moon or mars appearing at the horizon where short-term repatriation back to earth is impossible the availability of appropriate diagnostic platforms for crew health status is urgently needed. In response to this need, the present experiment evaluated the functionality and practicability of a metal oxide based sensor system (eNose) together with a newly developed breath gas collecting device under the condition of altering acceleration. Parabolic flights were performed with an Airbus A300 ZeroG at Bordeaux, France. Ambient air and exhaled breath of five healthy volunteers was analyzed during steady state flight and parabolic flight maneuvres. All volunteers completed the study, the breath gas collecting device valves worked appropriately, and breathing through the collecting device was easy and did not induce discomfort. During breath gas measurements, significant changes in metal oxide sensors, mainly sensitive to aromatic and sulphur containing compounds, were observed with alternating conditions of acceleration. Similarly, metal oxide sensors showed significant changes in all sensors during ambient air measurements. The eNose as well as the newly developed breath gas collecting device, showed appropriate functionality and practicability during alternating conditions of acceleration which is a prerequisite for the intended use of the eNose aboard the International Space Station (ISS) for breath gas analysis and crew health status

  14. Meta-analysis of functional brain imaging in specific phobia.

    Science.gov (United States)

    Ipser, Jonathan C; Singh, Leesha; Stein, Dan J

    2013-07-01

    Although specific phobia is a prevalent anxiety disorder, evidence regarding its underlying functional neuroanatomy is inconsistent. A meta-analysis was undertaken to identify brain regions that were consistently responsive to phobic stimuli, and to characterize changes in brain activation following cognitive behavioral therapy (CBT). We searched the PubMed, SCOPUS and PsycINFO databases to identify positron emission tomography and functional magnetic resonance imaging studies comparing brain activation in specific phobia patients and healthy controls. Two raters independently extracted study data from all the eligible studies, and pooled coordinates from these studies using activation likelihood estimation, a quantitative meta-analytic technique. Resulting statistical parametric maps were compared between patients and healthy controls, in response to phobic versus fear-evoking stimuli, and before and after therapy. Thirteen studies were included, comprising 327 participants. Regions that were consistently activated in response to phobic stimuli included the left insula, amygdala, and globus pallidus. Compared to healthy controls, phobic subjects had increased activation in response to phobic stimuli in the left amygdala/globus pallidus, left insula, right thalamus (pulvinar), and cerebellum. Following exposure-based therapy widespread deactivation was observed in the right frontal cortex, limbic cortex, basal ganglia and cerebellum, with increased activation detected in the thalamus. Exposure to phobia-specific stimuli elicits brain activation that is consistent with current understandings of the neuroanatomy of fear conditioning and extinction. There is evidence that the effects of CBT in specific phobia may be mediated through the same underlying neurocircuitry. © 2013 The Authors. Psychiatry and Clinical Neurosciences © 2013 Japanese Society of Psychiatry and Neurology.

  15. Functional Analysis of Shewanella, a cross genome comparison.

    Energy Technology Data Exchange (ETDEWEB)

    Serres, Margrethe H.

    2009-05-15

    The bacterial genus Shewanella includes a group of highly versatile organisms that have successfully adapted to life in many environments ranging from aquatic (fresh and marine) to sedimentary (lake and marine sediments, subsurface sediments, sea vent). A unique respiratory capability of the Shewanellas, initially observed for Shewanella oneidensis MR-1, is the ability to use metals and metalloids, including radioactive compounds, as electron acceptors. Members of the Shewanella genus have also been shown to degrade environmental pollutants i.e. halogenated compounds, making this group highly applicable for the DOE mission. S. oneidensis MR-1 has in addition been found to utilize a diverse set of nutrients and to have a large set of genes dedicated to regulation and to sensing of the environment. The sequencing of the S. oneidensis MR-1 genome facilitated experimental and bioinformatics analyses by a group of collaborating researchers, the Shewanella Federation. Through the joint effort and with support from Department of Energy S. oneidensis MR-1 has become a model organism of study. Our work has been a functional analysis of S. oneidensis MR-1, both by itself and as part of a comparative study. We have improved the annotation of gene products, assigned metabolic functions, and analyzed protein families present in S. oneidensis MR-1. The data has been applied to analysis of experimental data (i.e. gene expression, proteome) generated for S. oneidensis MR-1. Further, this work has formed the basis for a comparative study of over 20 members of the Shewanella genus. The species and strains selected for genome sequencing represented an evolutionary gradient of DNA relatedness, ranging from close to intermediate, and to distant. The organisms selected have also adapted to a variety of ecological niches. Through our work we have been able to detect and interpret genome similarities and differences between members of the genus. We have in this way contributed to the

  16. Functionalized membrane supports for covalent protein microsequence analysis

    Energy Technology Data Exchange (ETDEWEB)

    Coull, J.M.; Pappin, D.J.; Mark, J.; Aebersold, R.; Koester, H. (MilliGen/Biosearch, Division of Millipore, Burlington, MA (USA))

    1991-04-01

    Methods were developed for high yield covalent attachment of peptides and proteins to isothiocyanate and arylamine-derivatized poly(vinylidene difluoride) membranes for solid-phase sequence analysis. Solutions of protein or peptide were dried onto 8-mm membrane disks such that the functional groups on the surface and the polypeptide were brought into close proximity. In the case of the isothiocyanate membrane, reaction between polypeptide amino groups and the surface isothiocyanate moieties was promoted by application of aqueous N-methylmorpholine. Attachment of proteins and peptides to the arylamine surface was achieved by application of water-soluble carbodiimide in a pH 5.0 buffer. Edman degradation of covalently bound polypeptides was accomplished with initial and repetitive sequence yields ranging from 33 to 75% and 88.5 to 98.5%, respectively. The yields were independent of the sample load (20 pmol to greater than 1 nmol) for either surface. Significant loss of material was not observed when attachment residues were encountered during sequence runs. Application of bovine beta-lactoglobulin A chain, staphylococcus protein A, or the peptide melittin to the isothiocyanate membrane allowed for extended N-terminal sequence identification (35 residues from 20 pmol of beta-lactoglobulin). A number of synthetic and naturally occurring peptides were sequenced to the C-terminal residue following attachment to the arylamine surface. In one example, 10 micrograms of bovine alpha-casein was digested with staphylococcal protease V8 and the peptides were separated by reverse-phase chromatography. Peptide fractions were then directly applied to arylamine membrane disks for covalent sequence analysis. From as little as 2 pmol of initial signal it was possible to determine substantial sequence information (greater than 10 residues).

  17. FUNCTIONAL ANALYSIS OF THE HEALTH SECTOR IN ROMANIA

    Directory of Open Access Journals (Sweden)

    Bogdan Tatiana

    2015-07-01

    Full Text Available This paper comprises an assessment of the Romanian health financing policy and a detailed analysis of income and expenditure trends over the past seven years. The current situation of the health system is evaluated by reviewing the existing health legislation and documents on public health policies from Romania and from abroad, by analyzing the official statistics (the Romanian Yearbook of Health Statistics, Who database and by performing a healthcare system financial analysis. Although the financial efforts of the Romanian state to support the health system have increased, almost all the incomes and expenditures of the health care system having recorded significant increases, the population perception on health services worsened. Financing the health system continues to be inadequate and used in an ineffective way. Health is an essential component of well-being with major socio-economic implications. The organization and functioning of the health system depends on ensuring adequate funding. Romania must develop its health strategy in the context of European Union policies. These policies are based on values and principles such as promoting universal protection against financial risk, promoting a more equitable distribution of the financing burden, promoting equitable provision and use of services relative to need, improving the transparency and accountability of the system to the public, promoting quality and efficiency in service delivery, improving administrative efficiency, while ensuring the financial sustainability of the health system. In this context, in order to support a financially sustainable and high performing health system, the paper includes recommendations for increasing the public incomes in the health insurance system and options to streamline the healthcare services and expenses in the future.

  18. Exploring functional data analysis and wavelet principal component analysis on ecstasy (MDMA wastewater data

    Directory of Open Access Journals (Sweden)

    Stefania Salvatore

    2016-07-01

    Full Text Available Abstract Background Wastewater-based epidemiology (WBE is a novel approach in drug use epidemiology which aims to monitor the extent of use of various drugs in a community. In this study, we investigate functional principal component analysis (FPCA as a tool for analysing WBE data and compare it to traditional principal component analysis (PCA and to wavelet principal component analysis (WPCA which is more flexible temporally. Methods We analysed temporal wastewater data from 42 European cities collected daily over one week in March 2013. The main temporal features of ecstasy (MDMA were extracted using FPCA using both Fourier and B-spline basis functions with three different smoothing parameters, along with PCA and WPCA with different mother wavelets and shrinkage rules. The stability of FPCA was explored through bootstrapping and analysis of sensitivity to missing data. Results The first three principal components (PCs, functional principal components (FPCs and wavelet principal components (WPCs explained 87.5-99.6 % of the temporal variation between cities, depending on the choice of basis and smoothing. The extracted temporal features from PCA, FPCA and WPCA were consistent. FPCA using Fourier basis and common-optimal smoothing was the most stable and least sensitive to missing data. Conclusion FPCA is a flexible and analytically tractable method for analysing temporal changes in wastewater data, and is robust to missing data. WPCA did not reveal any rapid temporal changes in the data not captured by FPCA. Overall the results suggest FPCA with Fourier basis functions and common-optimal smoothing parameter as the most accurate approach when analysing WBE data.

  19. [The analysis of nervous system functions in dysmorphic syndromes].

    Science.gov (United States)

    Cianchetti, C; Marrosu, M G

    1993-01-01

    The involvement of the C.N.S. in dysmorphic syndromes is very frequent; therefore a systematic analysis of the functions of the nervous system is important in the clinical definition of these syndromes. Besides the morphological aspects, studied by magnetic resonance imaging, investigations should be carried out in the neuroelectrophysiological and neuropsychological fields. For the former, the following examinations are proposed: EEG in wakefulness and sleep, multimodal evoked potentials (VEP, BAEP, SEP), cortical magnetic stimulation and P300 (P3). For the neuropsychological field, a general intelligence test appropriate to the mental age of the subject (the Wechsler, Terman-Merrill, or Brunet-Lezine scale) and, whenever possible, the following complementary tests: Raven's Progressive Matrices, Bender's and Santucci's graphic tests, go-no go, Goodenough draw-a-person, reading and writing tests, Langeot's scale for development of the logical thinking, sorting test and verbal and spatial memory tests. In some cases, the behaviour should be defined, through Conner's scale for attention deficit-hyperactivity disorders, the Autism Diagnostic Interview, the Adaptive Behaviour Scale and the Brief Psychiatric Rating Scale.

  20. A comparison of methodologies of brief functional analysis.

    Science.gov (United States)

    Badgett, Natalie; Falcomata, Terry S

    2015-01-01

    To evaluate correspondence between three models of brief functional analysis (BFA); to evaluate a latency-based model of BFA. Single subject research; three models of BFA; latency-based BFA; brief A-B model with programmed antecedents and no programmed consequences for aberrant behaviour; A-B-C model with programmed antecedents and programmed consequences for aberrant behaviour; contingency reversal treatment evaluations conducted with each model; each model implemented with four individuals with autism diagnoses; correspondence of results between the three BFA models in terms of the conditions in which aberrant behaviour occurred. Overall, strong correspondence between all three BFA models was observed; several specific instances of non-correspondence within participants observed; more differentiation observed between test and control conditions in A-B model than A-B-C model. Additional support that clinicians and educators have flexibility in choosing BFA model that fits the specific, idiosyncratic variables and constraints of their setting (e.g. outpatient; classroom) and client(s).

  1. Estimation of Baroreflex Function Using Independent Component Analysis of Photoplethysmography

    Science.gov (United States)

    Abe, Makoto; Yoshizawa, Makoto; Sugita, Norihiro; Tanaka, Akira; Homma, Noriyasu; Yambe, Tomoyuki; Nitta, Shin-Ichi

    The maximum cross-correlation coefficient ρmax between blood pressure variability and heart rate variability, whose frequency components are limited to the Mayer wave-related band, is a useful index to evaluate the state of the autonomic nervous function related to baroreflex. However, measurement of continuous blood pressure with an expensive and bulky measuring device is required to calculate ρmax. The present study has proposed an easier method for obtaining ρmax with measurement of finger photoplethysmography (PPG) only. In the proposed method, independent components are extracted from feature variables specifying the PPG signal by using the independent component analysis (ICA), and then the most appropriate component is chosen out of them so that the ρmax calculated from the component can approximate its true value. The results from the experiment with a postural change performed in 18 healthy subjects have suggested that the proposed method is available for estimating ρmax by using the ICA to extract blood pressure information from the PPG signal.

  2. Organizational behaviour management: A functional analysis of productivity

    Directory of Open Access Journals (Sweden)

    P. Taffinder

    1986-04-01

    Full Text Available Organizational Behaviour Management (OBM represents a new perspective on productivity. In place of addressing "attitudes and motivational drives", OBM concentrates on the control of on-task behaviour. The 3-term contingency of antecedent, behaviour and consequence, or the functional analysis of behaviour as it is known in OBM, provides a delineation of how behaviour is evoked and what maintains or reinforces it. This orientation to productivity requires that the manager establish a contingent relationship between on task behaviour and reinforcing consequence. The reinforcing consequences may be social as well as financial. The effectiveness of OBM resides in its focus on the essential element of human productivity namely, directed behaviour. Opsomming Bestuur van Organisasiegerigte Gedrag (BOG of Organisational Behaviour Management (OBM verteenwoordig 'n nuwe uitkyk op die konsep van produktiwiteit daar dit nie soseer op "houdings" of'motiveringsdrange" konsentreer nie as op die beheer van taakgerigte gedrag. Die kontingensie van antesedent-gedrag-gevolg, of die funksionele analise van gedrag soos wat dit bekend staan in BOG, bied 'n uiteensetting van hoe gedrag ontstaan en hoe dit versterk ofvoortgesit word. Hierdie benadering tot produktiwiteit vereis van die bestuur om 'n kontingente verhouding te skep tussen taakgerigte gedrag en versterkende gevolge. Hierdie gevolge mag van sosiale of finansiele aard wees. Die doeltreffendheid van BOG berus op die sentrale veronderstelling dat gedrag ordelik is en op die fokus wat dit plaas op die kritieke element van menslike produktiwiteit, naamlik gerigte gedrag.

  3. Systematic design and functional analysis of artificial microRNAs

    Science.gov (United States)

    Arroyo, Jason D.; Gallichotte, Emily N.; Tewari, Muneesh

    2014-01-01

    Unlike short interfering RNAs (siRNAs), which are commonly designed to repress a single messenger RNA (mRNA) target through perfect base pairing, microRNAs (miRNAs) are endogenous small RNAs that have evolved to concurrently repress multiple mRNA targets through imperfect complementarity. MicroRNA target recognition is primarily determined by pairing of the miRNA seed sequence (nucleotides 2–8) to complementary match sites in each mRNA target. Whereas siRNA technology is well established for single target knockdown, the design of artificial miRNAs for multi-target repression is largely unexplored. We designed and functionally analysed over 200 artificial miRNAs for simultaneous repression of pyruvate carboxylase and glutaminase by selecting all seed matches shared by their 3′ untranslated regions. Although we identified multiple miRNAs that repressed endogenous protein expression of both genes, seed-based artificial miRNA design was highly inefficient, as the majority of miRNAs with even perfect seed matches did not repress either target. Moreover, commonly used target prediction programs did not substantially discriminate effective artificial miRNAs from ineffective ones, indicating that current algorithms do not fully capture the features important for artificial miRNA targeting and are not yet sufficient for designing artificial miRNAs. Our analysis suggests that additional factors are strong determinants of the efficacy of miRNA-mediated target repression and remain to be discovered. PMID:24598260

  4. Functional Valuation of Ecosystem Services on Bonaire: an ecological analysis of ecosystem functions provided by coral reefs

    NARCIS (Netherlands)

    Beek, van I.J.M.

    2011-01-01

    This research is a semi-quantitative analysis of the functional value of coral reef habitats on Bonaire to support ecosystem services. It is part of an economic valuation study of marine and terrestrial ecosystem services on Bonaire.

  5. Functional diversity in plant communities: Theory and analysis ...

    African Journals Online (AJOL)

    Plant functional diversity in community has become a key point in ecology studies recently. The development of species functional diversity was reviewed in the present work. Based on the former original research papers and reviews, we discussed the concept and connotation and put forward a new definition of functional ...

  6. Real analysis for the undergraduate with an invitation to functional analysis

    CERN Document Server

    Pons, Matthew A

    2014-01-01

    This undergraduate textbook introduces students to the basics of real analysis, provides an introduction to more advanced topics including measure theory and Lebesgue integration, and offers an invitation to functional analysis. While these advanced topics are not typically encountered until graduate study, the text is designed for the beginner. The author’s engaging style makes advanced topics approachable without sacrificing rigor. The text also consistently encourages the reader to pick up a pencil and take an active part in the learning process. Key features include: - examples to reinforce theory; - thorough explanations preceding definitions, theorems and formal proofs; - illustrations to support intuition; - over 450 exercises designed to develop connections between the concrete and abstract. This text takes students on a journey through the basics of real analysis and provides those who wish to delve deeper the opportunity to experience mathematical ideas that are beyond the standard undergraduate c...

  7. A Meta-Analysis Detailing Overall Sexual Function and Orgasmic Function in Women Undergoing Midurethral Sling Surgery for Stress Incontinence

    Directory of Open Access Journals (Sweden)

    Nicole Szell, DO

    2017-06-01

    Szell N, Komisaruk B, Goldstein SW, et al. A Meta-Analysis Detailing Overall Sexual Function and Orgasmic Function in Women Undergoing Midurethral Sling Surgery for Stress Incontinence. Sex Med 2017;5:e84–e93.

  8. Functional proteomic analysis of Ankaferd® Blood Stopper

    Directory of Open Access Journals (Sweden)

    Duygu Özel Demiralp

    2010-06-01

    Full Text Available Objective: Ankaferd® Blood Stopper (ABS comprises a standardized mixture of the plants Thymus vulgaris, Glycyrrhiza glabra, Vitis vinifera, Alpinia officinarum, and Urtica dioica. The basic mechanism of action for ABS is the formation of an encapsulated protein network that provides focal points for vital erythrocyte aggregation. ABS–induced protein network formation with blood cells, particularly erythrocytes, covers the primary and secondary hemostatic system without disturbing individual coagulation factors. Materials and Methods: To understand the effect mechanisms of ABS on hemostasis, a proteomic analysis using 2D gel electrophoresis and mass spectrometer was performed. Results: Proteins of plant origin in Ankaferd® were NADP-dependent-malic enzyme, ribulose bisphosphate-carboxylase-large chain, maturase K, ATP synthase subunit-beta, ATP synthase subunit-alpha, chalcone-flavanone isomerase-1, chalcone-flavanone isomerase-2, and actin-depolymerizing factor. Furthermore, functional proteomic studies revealed that proteins resembling human peptides have been detected within Ankaferd®, including ATP synthase, mucin-16 (CD164 sialomucin-like 2 protein, coiled-coil domain containing 141 hypothetical protein LOC283638 isoform 1, hypothetical protein LOC283638 isoform 2, dynactin 5, complex I intermediate-associated protein 30, mitochondrial, NADH dehydrogenase (ubiquinone 1 alpha subcomplex, TP synthase, H+ transporting, mitochondrial actin binding 1 isoform, LIM domain and actin binding 1 isoform a, LIM domain and actin binding 1 isoform b, spectrin alpha non erythrocytic 1, prolactin releasing hormone receptor, utrophin, tet oncogene family member 2 isoform b, protein phosphatase 1 regulatory subunit 12A, NIMA (never in mitosis gene a-related kinase, ATP-binding cassette protein C12, Homo sapiens malic enzyme 1, mitochondrial NADP(+-dependent malic enzyme 3, ME2 protein, nuclear factor 1 B-type, abhydrolase domain-containing protein 12B, E

  9. Analysis and design of functional micro/nano structured surfaces

    Science.gov (United States)

    Xu, Zhenzhen; Kong, Lingbao; Xu, Min

    2016-03-01

    In recent years, more and more attention has been paid to the bionic structure and functional materials. The theoretical research and fabricating ways of the Super-hydrophobic surface have sound achievements. However, the existing methods largely depend on the precision of the equipment and complex chemical substances, and it is hard to ensure the consistence of the material surface. Therefore, construction of microstructure on the surface of the material by using the method of mechanical processing to make the scale of the Super-hydrophobic surface to promote the popularization and application of Super-hydrophobic surface is of great significance. In order to put forward the innovative microstructure and to provide theoretical basis for the subsequent mechanical processing, based on the analysis of the classical theory of Super-hydrophobic, the super-hydrophobic film was by sol gel method. To explore the effects of different ratio of materials on the hydrophobicity, a micro/nano-structured super-hydrophobic coating was obtained by coating a film improved by hexamethyldisilazane (HMDS) after a film improved by polyethylene glycol (PEG) was coated. The microstructure of bilayer films is analyzed, and the double-layer film structure is simplified to design two kinds of microstructure models. For the design of the two models based on the Wenzel and Cassie equations, a roughness factor is adopted to establish the quantitative relationship between the contact angle and the microstructure parameters, and the microstructure parameters is also analyzed by using MATLAB software, and hence the optimized microstructure parameters is obtained.

  10. Functional analysis and functional communication training in individuals with Angelman syndrome

    NARCIS (Netherlands)

    Radstaake, M.; Didden, H.C.M.; Oliver, C.; Allen, D.; Curfs, L.M.G.

    2012-01-01

    Objective: To assess the functions of challenging behaviour in four children with Angelman syndrome (AS) and to study the effects of functional communication training (FCT) with precursor-based prompting. This study builds on and extends the study of Allen et al. Method: Experimental functional

  11. Production Functions for Water Delivery Systems: Analysis and Estimation Using Dual Cost Function and Implicit Price Specifications

    Science.gov (United States)

    Teeples, Ronald; Glyer, David

    1987-05-01

    Both policy and technical analysis of water delivery systems have been based on cost functions that are inconsistent with or are incomplete representations of the neoclassical production functions of economics. We present a full-featured production function model of water delivery which can be estimated from a multiproduct, dual cost function. The model features implicit prices for own-water inputs and is implemented as a jointly estimated system of input share equations and a translog cost function. Likelihood ratio tests are performed showing that a minimally constrained, full-featured production function is a necessary specification of the water delivery operations in our sample. This, plus the model's highly efficient and economically correct parameter estimates, confirms the usefulness of a production function approach to modeling the economic activities of water delivery systems.

  12. Control-flow analysis of function calls and returns by abstract interpretation

    DEFF Research Database (Denmark)

    Midtgaard, Jan; Jensen, Thomas P.

    2012-01-01

    Abstract interpretation techniques are used to derive a control-flow analysis for a simple higher-order functional language. The analysis approximates the interprocedural control-flow of both function calls and returns in the presence of first-class functions and tail-call optimization. In additi...... a rational reconstruction of a constraint-based CFA from abstract interpretation principles....

  13. A Functional Metagenomic Analysis of Tetracycline Resistance in Cheese Bacteria

    Directory of Open Access Journals (Sweden)

    Ana B. Flórez

    2017-05-01

    Full Text Available Metagenomic techniques have been successfully used to monitor antibiotic resistance genes in environmental, animal and human ecosystems. However, despite the claim that the food chain plays a key role in the spread of antibiotic resistance, metagenomic analysis has scarcely been used to investigate food systems. The present work reports a functional metagenomic analysis of the prevalence and evolution of tetracycline resistance determinants in a raw-milk, blue-veined cheese during manufacturing and ripening. For this, the same cheese batch was sampled and analyzed on days 3 and 60 of manufacture. Samples were diluted and grown in the presence of tetracycline on plate count milk agar (PCMA (non-selective and de Man Rogosa and Sharpe (MRS agar (selective for lactic acid bacteria, LAB. DNA from the cultured bacteria was then isolated and used to construct four fosmid libraries, named after the medium and sampling time: PCMA-3D, PCMA-60D, MRS-3D, and MRS-60D. Clones in the libraries were subjected to restriction enzyme analysis, PCR amplification, and sequencing. Among the 300 fosmid clones analyzed, 268 different EcoRI restriction profiles were encountered. Sequence homology of their extremes clustered the clones into 47 groups. Representative clones of all groups were then screened for the presence of tetracycline resistance genes by PCR, targeting well-recognized genes coding for ribosomal protection proteins and efflux pumps. A single tetracycline resistance gene was detected in each of the clones, with four such resistance genes identified in total: tet(A, tet(L, tet(M, and tet(S. tet(A was the only gene identified in the PCMA-3D library, and tet(L the only one identified in the PCMA-60D and MRS-60D libraries. tet(M and tet(S were both detected in the MRS-3D library and in similar numbers. Six representative clones of the libraries were sequenced and analyzed. Long segments of all clones but one showed extensive homology to plasmids from Gram

  14. Complex analysis I entire and meromorphic functions polyanalytic functions and their generalizations

    CERN Document Server

    Havin, V; Nikolski, N

    1997-01-01

    The first part of the volume contains a comprehensive description of the theory of entire and meromorphic functions of one complex variable and its applications. It includes the fundamental notions, methods and results on the growth of entire functions and the distribution of their zeros, the Rolf Nevanlinna theory of distribution of values of meromorphic functions including the inverse problem, the theory of completely regular growth, the concept of limit sets for entire and subharmonic functions. The authors describe the interpolation by entire functions, to entire and meromorphic solutions of ordinary differential equations, to the Riemann boundary problem with an infinite index and to the arithmetic of the convolution semigroup of probability distributions. Polyanalytic functions form one of the most natural generalizations of analytic functions and are described in Part II. They emerged for the first time in plane elasticity theory where they found important applications (due to Kolossof, Mushelishvili e...

  15. [Erectile function after myocardial revascularization surgery. Analysis of 30 cases].

    Science.gov (United States)

    Gueglio, Guillermo; Chamas, Germán; Ruda Vega, Pablo; García Merletti, Pablo; Domenech, Alberto; Damia, Oscar

    2002-01-01

    To assess prospectively the impact of extracorporeal circulation on erectile function and the probable prognosis of future erectile function in patients undergoing myocardial revascularization surgery. 30 patients who met the following criteria were analyzed: a) age less than 80 years, b) elective surgery, c) use of extracorporeal circulation and d) stable partner. Pre-operative erectile function was determined and other cardiovascular risk factors by means of a written questionnaire. The patients were classified into three groups according to the preoperative erectile function: good (group A), fair (group B) and poor (group C). All patients underwent myocardial revascularization surgery. 3 patients (27.2%) of group A reported poor erections after surgery, while 8 (72.7%) reported no changes in erectile function. Four patients (44.4%) of group B reported poor erection postoperatively, another 4 (44.4%) reported no significant changes in erectile function and 1 (11.1%) reported improvement in erectile function. One patient (10%) of group C reported improved erectile function, while the remaining patients reported no changes. To determine the influence of extracorporeal circulation and clamping time on erectile function as independent variables, the patients were classified into group I (patients of groups A and B that preserved or improved erectile function postoperatively) and group II (patients of groups A and B that reported poor erectile function postoperatively). The mean extracorporeal circulation time was 99 mins for group I and 116 mins for group II (p = 0.7102). The mean clamping time for group I was 56.84 mins and 69.57 mins for group II (p = 0.5375). No statistically significant differences were found (Wilcoxon test). A) Patients with good erectile function undergoing myocardial revascularization surgery with extracorporeal circulation have a high probability of preserving the quality of erectile function postoperatively. B) Patients with erectile

  16. Performance Analysis of Dipole Antennas Embedded in Core-Shell Spheres: A Green's Function Analysis

    CERN Document Server

    Ghadarghadr, Shabnam

    2010-01-01

    The main goal of this work is to theoretically investigate the behavior of an electrically small antenna enclosed in a concentric sphere. The Greens function analysis is applied to characterize the input impedance of a concentric resonator excited by a dipole located at its center. The method of moments (MoM) with Galrekin's procedure is used to determine the current distribution over the source excitation and hence the input impedance. The behavior of quality factor (Q) and bandwidths of the antenna is studied with the use of input impedance as a function of frequency. We illustrate that by embedding a dipole antenna inside a core-shell structure, with magnetic shell and dielectric core, a Q as low as the Chu limit can be approached. The obtained observations demonstrate how a resonator composed of magnetic shells can provide electrically small antennas with high bandwidths performance.

  17. 308 An Analysis of Sociolinguistic Functional Elements in the ...

    African Journals Online (AJOL)

    User

    2011-07-21

    Jul 21, 2011 ... formulated by Wilkins (1972). He proposed that course contents should be grade on the basis of functions and notions. He described functions as categories of verbal communication in a variety of settings, on a variety of topic and notions as concepts of meaning, which people use in verbal communication.

  18. A Component Analysis of Schedule Thinning during Functional Communication Training

    Science.gov (United States)

    Betz, Alison M.; Fisher, Wayne W.; Roane, Henry S.; Mintz, Joslyn C.; Owen, Todd M.

    2013-01-01

    One limitation of functional communication training (FCT) is that individuals may request reinforcement via the functional communication response (FCR) at exceedingly high rates. Multiple schedules with alternating periods of reinforcement and extinction of the FCR combined with gradually lengthening the extinction-component interval can…

  19. Functional analysis of three plasmids from Lactobacillus plantarum

    NARCIS (Netherlands)

    Kranenburg, R. van; Golic, N.; Bongers, R.; Leer, R.J.; Vos, W.M. de; Siezen, R.J.; Kleerebezem, M.

    2005-01-01

    Lactobacillus plantarum WCFS1 harbors three plasmids, pWCFS101, pWCFS102, and pWCFS103, with sizes of 1,917, 2,365, and 36,069 bp, respectively. The two smaller plasmids are of unknown function and contain replication genes that are likely to function via the rolling-circle replication mechanism.

  20. 308 An Analysis of Sociolinguistic Functional Elements in the ...

    African Journals Online (AJOL)

    User

    2011-07-21

    Jul 21, 2011 ... grammatical categories and still lack communicative abilities. The Need to Teach Sociolinguistic Functional Elements. Roberts (1982) emphasized the need to expose students to real life language in the classroom, if they are to acquire communicative competence. The communicative functions outlined ...

  1. Novel axolotl cardiac function analysis method using magnetic resonance imaging

    NARCIS (Netherlands)

    Sanches, Pedro Gomes; Op 't Veld, Roel C.; de Graaf, Wolter; Strijkers, Gustav J.; Grüll, Holger

    2017-01-01

    The salamander axolotl is capable of complete regeneration of amputated heart tissue. However, non-invasive imaging tools for assessing its cardiac function were so far not employed. In this study, cardiac magnetic resonance imaging is introduced as a non-invasive technique to image heart function

  2. Compilation of functional languages using flow graph analysis

    NARCIS (Netherlands)

    Hartel, Pieter H.; Glaser, Hugh; Wild, John M.

    A system based on the notion of a flow graph is used to specify formally and to implement a compiler for a lazy functional language. The compiler takes a simple functional language as input and generates C. The generated C program can then be compiled, and loaded with an extensive run-time system to

  3. Identification and analysis of interactions between sea use functions

    NARCIS (Netherlands)

    Wal, van der J.T.; Quirijns, F.J.; Leopold, M.F.; Slijkerman, D.M.E.; Jongbloed, R.H.

    2009-01-01

    This report focuses on the interactions both positive and negative between offshore wind energy and the non-wind sea use functions.Some sea use functions can co-exist without substantial negative effects. Other combinations are problematic or even impossible and should be avoided. Therefore the

  4. Analysis of some functional properties of acetic acid bacteria ...

    African Journals Online (AJOL)

    SARAH

    2014-03-31

    Mar 31, 2014 ... ABSTRACT. Objective: To investigate some functional properties of acetic acid bacteria (AAB), involved in Côte d'Ivoire ... Functional properties such as acid production, thermotolerance, resistance to alcoholic stress carbon metabolism and .... was carried out in HS broth medium containing 0.05 % glucose ...

  5. Many-body lattice wave functions from conformal blocks

    Science.gov (United States)

    Montes, Sebastián; Rodríguez-Laguna, Javier; Tu, Hong-Hao; Sierra, Germán

    2017-02-01

    We introduce a general framework to construct many-body lattice wave functions starting from the conformal blocks (CBs) of rational conformal field theories (RCFTs). We discuss the different ways of encoding the physical degrees of freedom of the lattice system using both the internal symmetries of the theory and the fusion channels of the CBs. We illustrate this construction both by revisiting the known Haldane-Shastry model and by providing a novel implementation for the Ising RCFT. In the latter case, we find a connection to the Ising transverse field (ITF) spin chain via the Kramers-Wannier duality and the Temperley-Lieb-Jones algebra. We also find evidence that the ground state of the finite-size critical ITF Hamiltonian corresponds exactly to the wave function obtained from CBs of spin fields.

  6. Optimization of functionalization conditions for protein analysis by AFM

    Energy Technology Data Exchange (ETDEWEB)

    Arroyo-Hernández, María, E-mail: maria.arroyo@ctb.upm.es [Centro de Tecnología Biomédica, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid (Spain); Departamento de Ciencia de Materiales, ETSI Caminos, Canales y Puertos, Universidad Politécnica de Madrid, 28040 Madrid (Spain); Daza, Rafael; Pérez-Rigueiro, Jose; Elices, Manuel; Nieto-Márquez, Jorge; Guinea, Gustavo V. [Centro de Tecnología Biomédica, Universidad Politécnica de Madrid, 28223 Pozuelo de Alarcón, Madrid (Spain); Departamento de Ciencia de Materiales, ETSI Caminos, Canales y Puertos, Universidad Politécnica de Madrid, 28040 Madrid (Spain)

    2014-10-30

    Highlights: • Highest fluorescence is obtained for central conditions. • Largest primary amine contribution is obtained for central conditions. • RMS roughness is smaller than 1 nm for all functional films. • Selected deposition conditions lead to proper RMS and functionality values. • LDH proteins adsorbed on AVS-films were observed by AFM. - Abstract: Activated vapor silanization (AVS) is used to functionalize silicon surfaces through deposition of amine-containing thin films. AVS combines vapor silanization and chemical vapor deposition techniques and allows the properties of the functionalized layers (thickness, amine concentration and topography) to be controlled by tuning the deposition conditions. An accurate characterization is performed to correlate the deposition conditions and functional-film properties. In particular, it is shown that smooth surfaces with a sufficient surface density of amine groups may be obtained with this technique. These surfaces are suitable for the study of proteins with atomic force microscopy.

  7. Graph analysis of EEG resting state functional networks in dyslexic readers

    NARCIS (Netherlands)

    Fraga González, G.; Van der Molen, M.J.W.; Žarić, G.; Bonte, M.; Tijms, J.; Blomert, L.; Stam, C.J.; Van der Molen, M.W.

    2016-01-01

    Objective Neuroimaging research suggested a mixed pattern of functional connectivity abnormalities in developmental dyslexia. We examined differences in the topological properties of functional networks between 29 dyslexics and 15 typically reading controls in 3rd grade using graph analysis. Graph

  8. Systemic inflammation and lung function: A longitudinal analysis.

    Science.gov (United States)

    Hancox, Robert J; Gray, Andrew R; Sears, Malcolm R; Poulton, Richie

    2016-02-01

    Systemic inflammation is associated with impaired lung function in healthy adults as well as in patients with lung disease. The mechanism for this association is unknown and it is unclear if systemic inflammation leads to impaired lung function or if poor lung function leads to inflammation. We explored the temporal associations between blood C-reactive protein (CRP), fibrinogen, and white blood cells, and lung function in young adults. Spirometry, plethysmography, and diffusion capacity were measured in a population-based cohort at ages 32 and 38 years. High-sensitivity CRP, fibrinogen, and white blood cells were measured at the same ages. Higher levels of CRP and, to a lesser extent, fibrinogen were associated with lower lung volumes in cross-sectional analyses at both ages 32 and 38 years. Higher CRP and fibrinogen at age 32 were associated with higher FEV1 and FEV1/FVC at age 38, but not other measures of lung function. Lower lung volumes (total lung capacity, functional residual capacity, and residual volume) but not airflow obstruction (FEV1/FVC) at age 32 were associated with higher CRP at age 38. Associations between age 32 lung function and fibrinogen at follow-up were weaker, but consistent. There were no longitudinal associations between white blood cells and lung function. We found no evidence that systemic inflammation causes a decline in lung function. However, lower lung volumes were associated with higher CRP and fibrinogen at follow-up indicating that pulmonary restriction may be a risk factor for systemic inflammation. The mechanism for this association remains unclear. Copyright © 2015 Elsevier Ltd. All rights reserved.

  9. Similarity analysis of functional connectivity with functional near-infrared spectroscopy

    NARCIS (Netherlands)

    Dalmis, M.U.; Akin, A.

    2015-01-01

    One of the remaining challenges in functional connectivity (FC) studies is investigation of the temporal variability of FC networks. Recent studies focusing on the dynamic FC mostly use functional magnetic resonance imaging as an imaging tool to investigate the temporal variability of FC. We

  10. Use of differential item functioning (DIF analysis for bias analysis in test construction

    Directory of Open Access Journals (Sweden)

    Marié De Beer

    2004-10-01

    Full Text Available When differential item functioning (DIF item analysis procedures based on item response theory (IRT are used during test construction, it is possible to draw item characteristic curves for the same item for different subgroups. These curves indicate how each item functions at various ability levels for different subgroups. DIF is indicated by the area between the curves. In the construction of the Learning Potential Computerised Adaptive Test (LPCAT, this method was used to identify items that indicated bias in terms of gender, culture, language or level of education. Items that exceeded a predetermined amount of DIF were discarded from the final item bank, irrespective of which subgroup was being advantaged or disadvantaged. The process and results of the DIF analysis are discussed.Opsomming Waar differensiële itemfunksioneringsprosedures (DIF-prosedures vir itemontleding gebaseer op itemresponsteorie (IRT tydens toetskonstruksie gebruik word, is dit moontlik om itemkarakteristiekekrommes vir dieselfde item vir verskillende subgroepe voor te stel. Hierdie krommes dui aan hoe elke item vir die verskillende subgroepe op verskillende vermoënsvlakke te funksioneer. DIF word aangetoon deur die area tussen die krommes. DIF is in die konstruksie van die 'Learning Potential Computerised Adaptive test (LPCAT' gebruik om die items te identifiseer wat sydigheid ten opsigte van geslag, kultuur, taal of opleidingspeil geopenbaar het. Items wat ’n voorafbepaalde vlak van DIF oorskry het, is uit die finale itembank weggelaat, ongeag die subgroep wat bevoordeel of benadeel is. Die proses en resultate van die DIF-ontleding word bespreek.

  11. Mutant Resources for the Functional Analysis of the Rice Genome

    National Research Council Canada - National Science Library

    Nili Wang Tuan Long Wen Yao Lizhong Xiong Qifa Zhang Changyin Wu

    2013-01-01

    .... In order to systematically assign functions to all predicted genes in the rice genome, a large number of rice mutant lines, including those created by T-DNA insertion, Ds/dSpm tagging, Tos17 tagging...

  12. Stochastic sensitivity analysis using HDMR and score function

    Indian Academy of Sciences (India)

    Keywords. Stochastic sensitivity; structural reliability; high dimensional model representation; score function; statistical moment. ... School of Engineering, Swansea University, Swansea, SA2 8PP, UK; Structural Engineering Division, Department of Civil Engineering, Indian Institute of Technology Madras, Chennai 600 036 ...

  13. Functional analysis of thermostable proteins involved in carbohydrate metabolism

    NARCIS (Netherlands)

    Akerboom, A.P.

    2007-01-01

    Thermostable proteins can resist temperature stress whilst keeping their integrity and functionality. In many cases,  thermostable proteins originate from hyperthermophilic microorganisms that thrive in extreme environments. These systems are generally located close to geothermal (volcanic)

  14. Multifractal analysis of non-uniformly contracting iterated function systems

    Science.gov (United States)

    Ye, Yuan-Ling

    2017-05-01

    Let X  =  [0,1]. Given a non-uniformly contracting conformal iterated function system (IFS) ≤ft\\{{{w}j}\\right\\}j=1m and a family of positive Dini continuous potential functions ≤ft\\{ {{p}j}\\right\\}j=1m , the triple system ≤ft(X,≤ft\\{{{w}j}\\right\\}j=1m,≤ft\\{ {{p}j}\\right\\}j=1m\\right) , under some conditions, determines uniquely a probability invariant measure, denoted by μ. In this paper, we study the pressure function of the system and multifractal structure of μ. We prove that the pressure function is Gateaux differentiable and the multifractal formalism holds, if the IFS ≤ft\\{{{w}j}\\right\\}j=1m has non-overlapping.

  15. Functional pathway mapping analysis for hypoxia-inducible factors.

    Science.gov (United States)

    Chuang, Chia-Sheng; Pai, Tun-Wen; Hu, Chin-Hua; Tzou, Wen-Shyong; Dah-Tsyr Chang, Margaret; Chang, Hao-Teng; Chen, Chih-Chia

    2011-06-20

    Hypoxia-inducible factors (HIFs) are transcription factors that play a crucial role in response to hypoxic stress in living organisms. The HIF pathway is activated by changes in cellular oxygen levels and has significant impacts on the regulation of gene expression patterns in cancer cells. Identifying functional conservation across species and discovering conserved regulatory motifs can facilitate the selection of reference species for empirical tests. This paper describes a cross-species functional pathway mapping strategy based on evidence of homologous relationships that employs matrix-based searching techniques for identifying transcription factor-binding sites on all retrieved HIF target genes. HIF-related orthologous and paralogous genes were mapped onto the conserved pathways to indicate functional conservation across species. Quantitatively measured HIF pathways are depicted in order to illustrate the extent of functional conservation. The results show that in spite of the evolutionary process of speciation, distantly related species may exhibit functional conservation owing to conservative pathways. The novel terms OrthRate and ParaRate are proposed to quantitatively indicate the flexibility of a homologous pathway and reveal the alternative regulation of functional genes. The developed functional pathway mapping strategy provides a bioinformatics approach for constructing biological pathways by highlighting the homologous relationships between various model species. The mapped HIF pathways were quantitatively illustrated and evaluated by statistically analyzing their conserved transcription factor-binding elements. hypoxia-inducible factor (HIF), hypoxia-response element (HRE), transcription factor (TF), transcription factor binding site (TFBS), KEGG (Kyoto Encyclopedia of Genes and Genomes), cross-species comparison, orthology, paralogy, functional pathway.

  16. A Bivariate Extension to Traditional Empirical Orthogonal Function Analysis

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Hilger, Klaus Baggesen; Andersen, Ole Baltazar

    2002-01-01

    This paper describes the application of canonical correlations analysis to the joint analysis of global monthly mean values of 1996-1997 sea surface temperature (SST) and height (SSH) data. The SST data are considered as one set and the SSH data as another set of multivariate observations, both...... as for example an increase in the SST will lead to an increase in the SSH. The analysis clearly shows the build-up of one of the largest El Niño events on record. Also the analysis indicates a phase lag of approximately one month between the SST and SSH fields....

  17. A Functional Analysis Framework for Modeling, Estimation and Control in Science and Engineering

    CERN Document Server

    Banks, HT

    2012-01-01

    A Modern Framework Based on Time-Tested Material A Functional Analysis Framework for Modeling, Estimation and Control in Science and Engineering presents functional analysis as a tool for understanding and treating distributed parameter systems. Drawing on his extensive research and teaching from the past 20 years, the author explains how functional analysis can be the basis of modern partial differential equation (PDE) and delay differential equation (DDE) techniques. Recent Examples of Functional Analysis in Biology, Electromagnetics, Materials, and Mechanics Through numerous application exa

  18. Gender Differences in Bed Rest: Preliminary Analysis of Vascular Function

    Science.gov (United States)

    Platts, Steven H.; Stenger, Michael B.; Martin, David S.; Freeman-Perez, Sondra A.; Phillips, Tiffany; Ribeiro, L. Christine

    2008-01-01

    Orthostatic intolerance is a recognized consequence of spaceflight. Numerous studies have shown that women are more susceptible to orthostatic intolerance following spaceflight as well as bed rest, the most commonly used ground-based analog for spaceflight. One of the possible mechanisms proposed to account for this is a difference in vascular responsiveness between genders. We hypothesized that women and men would have differing vascular responses to 90 days of 6-degree head down tilt bed rest. Additionally, we hypothesized that vessels in the upper and lower body would respond differently, as has been shown in the animal literature. Thirteen subjects were placed in bedrest for 90 days (8 men, 5 women) at the Flight Analogs Unit, UTMB. Direct arterial and venous measurements were made with ultrasound to evaluate changes in vascular structure and function. Arterial function was assessed, in the arm and leg, during a reactive hyperemia protocol and during sublingual nitroglycerin administration to gauge the contributions of endothelial dependent and independent dilator function respectively. Venous function was assessed in dorsal hand and foot veins during the administration of pharmaceuticals to assess constrictor and dilator function. Both gender and day effects are seen in arterial dilator function to reactive hyperemia, but none are seen with nitroglycerin. There are also differences in the wall thickness in the arm vs the leg during bed rest, which return toward pre-bed rest levels by day 90. More subjects are required, especially females as there is not sufficient power to properly analyze venous function. Day 90 data are most underpowered.

  19. Structural and functional analysis of multi-interface domains.

    Directory of Open Access Journals (Sweden)

    Liang Zhao

    Full Text Available A multi-interface domain is a domain that can shape multiple and distinctive binding sites to contact with many other domains, forming a hub in domain-domain interaction networks. The functions played by the multiple interfaces are usually different, but there is no strict bijection between the functions and interfaces as some subsets of the interfaces play the same function. This work applies graph theory and algorithms to discover fingerprints for the multiple interfaces of a domain and to establish associations between the interfaces and functions, based on a huge set of multi-interface proteins from PDB. We found that about 40% of proteins have the multi-interface property, however the involved multi-interface domains account for only a tiny fraction (1.8% of the total number of domains. The interfaces of these domains are distinguishable in terms of their fingerprints, indicating the functional specificity of the multiple interfaces in a domain. Furthermore, we observed that both cooperative and distinctive structural patterns, which will be useful for protein engineering, exist in the multiple interfaces of a domain.

  20. Analysis of Uncertainty in Dynamic Processes Development of Banks Functioning

    Directory of Open Access Journals (Sweden)

    Aleksei V. Korovyakovskii

    2013-01-01

    Full Text Available The paper offers the approach to measure of uncertainty estimation in dynamic processes of banks functioning, using statistic data of different banking operations indicators. To calculate measure of uncertainty in dynamic processes of banks functioning the phase images of relevant sets of statistic data are considered. Besides, it is shown that the form of phase image of the studied sets of statistic data can act as a basis of measure of uncertainty estimation in dynamic processes of banks functioning. The set of analytical characteristics are offered to formalize the form of phase image definition of the studied sets of statistic data. It is shown that the offered analytical characteristics consider inequality of changes in values of the studied sets of statistic data, which is one of the ways of uncertainty display in dynamic processes development. The invariant estimates of measure of uncertainty in dynamic processes of banks functioning, considering significant changes in absolute values of the same indicators for different banks were obtained. The examples of calculation of measure of uncertainty in dynamic processes of concrete banks functioning were cited.

  1. A Meta-Analysis Detailing Overall Sexual Function and Orgasmic Function in Women Undergoing Midurethral Sling Surgery for Stress Incontinence.

    Science.gov (United States)

    Szell, Nicole; Komisaruk, Barry; Goldstein, Sue W; Qu, Xianggui Harvey; Shaw, Michael; Goldstein, Irwin

    2017-06-01

    More than 200,000 midurethral slings are placed yearly for stress urinary incontinence. Approximately 14% to 20% of women experience worsening sexual function overall after these procedures. We postulated that sling placement injures neural pathways regulating "female prostate" tissue within the anterior vaginal wall. To perform a meta-analysis for overall sexual function and orgasm using validated questionnaires for transvaginal tape, transobturator tape, and their variants. Effect sizes of preoperative and postoperative questionnaire scores for overall sexual function and orgasm were calculated. Random-effects models were selected for meta-analyses. Statistical analysis involved determination of the ratio of total heterogeneity to total variability. Differences of overall sexual and orgasm functions were calculated by subtracting postoperative sling scores from preoperative sling scores. Forest plots of effect sizes were performed. Sixty-seven percent of midurethral sling procedures analyzed showed no change or improvement in overall sexual function postoperatively, whereas 33% of studies analyzed for orgasm function showed improvement after the procedure. For transvaginal tape, mean total sexual function and orgasm postoperative scores were significantly higher than preoperative scores. For transobturator tape, mean total postoperative score was significantly higher than the preoperative score; however, the mean orgasm postoperative score was not significantly higher than the preoperative score, possibly because of variability in transobturator tape data. There is a discrepancy between postoperative sexual satisfaction and orgasmic function after midurethral sling surgery. Although overall sexual function remained the same or improved for most women, orgasmic function in only one third of cases improved overall, with most women experiencing no change or deterioration in orgasmic function. Dissection for, and placement of, the midurethral sling can compromise

  2. Magnetic pair distribution function analysis of local magnetic correlations.

    Science.gov (United States)

    Frandsen, Benjamin A; Yang, Xiaohao; Billinge, Simon J L

    2014-01-01

    The analytical form of the magnetic pair distribution function (mPDF) is derived for the first time by computing the Fourier transform of the neutron scattering cross section from an arbitrary collection of magnetic moments. Similar to the atomic pair distribution function applied to the study of atomic structure, the mPDF reveals both short-range and long-range magnetic correlations directly in real space. This function is experimentally accessible and yields magnetic correlations even when they are only short-range ordered. The mPDF is evaluated for various example cases to build an intuitive understanding of how different patterns of magnetic correlations will appear in the mPDF.

  3. Analysis of Amyloid Precursor Protein function in Drosophila melanogaster

    Directory of Open Access Journals (Sweden)

    Doris Kretzschmar

    2016-07-01

    Full Text Available The Amyloid precursor protein (APP has mainly been investigated in connection with its role in Alzheimer’s disease due to its cleavage resulting in the production of the Aβ peptides that accumulate in the plaques characteristic for this disease. However, APP is an evolutionary conserved protein that is not only found in humans but also in many other species, including Drosophila, suggesting an important physiological function. Besides Aβ, several other fragments are produced by the cleavage of APP; large secreted fragments derived from the N-terminus and a small intracellular C-terminal fragment. Although these fragments have received much less attention than Aβ, a picture about their function is finally emerging. In contrast to mammals, which express three APP family members, Drosophila expresses only one APP protein called Amyloid Precursor Protein-like or APPL. Therefore APPL functions can be studied in flies without the complication that other APP family members may have redundant functions. Flies lacking APPL are viable but show defects in neuronal outgrowth in the central and peripheral nervous system in addition to synaptic changes. Furthermore, APPL has been connected with axonal transport functions. In the adult nervous system, APPL, and more specifically its secreted fragments, can protect neurons from degeneration. APPL cleavage also prevents glial death. Lastly, APPL was found to be involved in behavioural deficits and in regulating sleep/activity patterns. This review, will describe the role of APPL in neuronal development and maintenance and briefly touch on its emerging function in circadian rhythms while an accompanying review will focus on its role in learning and memory formation.

  4. Analysis of Balance during Functional Walking in Stroke Survivors.

    Directory of Open Access Journals (Sweden)

    Fokke B van Meulen

    Full Text Available An important objective of rehabilitation care is to regain adequate balance function to safely ambulate in community. However, in rehabilitation practice, it remains unclear if a stroke survivor functionally recovers by restitution or by learning to compensate for the lack of restoration of body function. Aim of this study is to propose and evaluate methods for the objective evaluation of balance during functional walking in stroke survivors.Stroke survivors performed twice a Timed "Up & Go" (TUG test. Ground reaction forces and position changes of both feet were measured using instrumented shoes and used to estimate the position of the center of mass (CoM. Balance control and efficiency metrics were defined to evaluate functional walking under variable conditions. Metrics were corrected based on the instantaneous velocity direction of CoM. Intra- and inter-participant variations for different phases of the TUG test were examined. Metrics were related to the Berg balance scale (BBS.Participants with higher BBS scores show a more efficient walking pattern. Their walking velocity and walking direction is less variable and they are more frequently unstable when walking in a straight line or when turning. Furthermore, the less affected participants are able to move their CoM more towards their affected side.We developed and demonstrated a method to assess walking balance of stroke survivors. System design and evaluation methods allow balance evaluation during functional walking in daily life. Some presented metrics show correlations with BBS scores. Clear inter- and intra-patient variations in metric values are present that cannot be explained by BBS scores, which supports the additional value of the presented system. Presented methods may be used for objective evaluation of restitution and compensation of walking balance and have a potential application in individual evidence-based therapy.

  5. Robustness of Multiple Objective Decision Analysis Preference Functions

    Science.gov (United States)

    2002-06-01

    Clemen, Bob , and Robert C. Kwit. “The Value of Decision Analysis at Eastman Kodak Company, 1990-1999,” Interfaces, 31: 74 – 92 (2001). Clemen... Bob . “The Value of Decision Analysis: An Update.” Presentation to the Decision Analysis Affinity Group, Calgary, May 18, 2000. Coates, Joseph F...Duncan, and A. A. J. Marley . “On Elements of Chance,” Theory and Decision, 49: 97 – 126 (2000a). Luce, R. D. Utility of Gains and Losses

  6. Detection of Functional Change Using Cluster Trend Analysis in Glaucoma

    Science.gov (United States)

    Gardiner, Stuart K.; Mansberger, Steven L.; Demirel, Shaban

    2017-01-01

    Purpose Global analyses using mean deviation (MD) assess visual field progression, but can miss localized changes. Pointwise analyses are more sensitive to localized progression, but more variable so require confirmation. This study assessed whether cluster trend analysis, averaging information across subsets of locations, could improve progression detection. Methods A total of 133 test–retest eyes were tested 7 to 10 times. Rates of change and P values were calculated for possible re-orderings of these series to generate global analysis (“MD worsening faster than x dB/y with P trend analysis detects subsequently confirmed deterioration sooner than either global or pointwise analyses. PMID:28715580

  7. Bioactive phytochemicals in wheat: Extraction, analysis, processing, and functional properties

    Science.gov (United States)

    Whole wheat provides a rich source of bioactive phytochemicals namely, phenolic acids, carotenoids, tocopherols, alkylresorcinols, arabinoxylans, benzoxazinoids, phytosterols, and lignans. This review provides information on the distribution, extractability, analysis, and nutraceutical properties of...

  8. Functional and catalytic active sites prediction and docking analysis ...

    African Journals Online (AJOL)

    Bioinformatics

    2015-07-01

    Jul 1, 2015 ... docking analysis of azoreductase enzyme in. Pseudomonas putida with a variety of commercially available azodyes. Bikash Thakuria, Chandra J Singha, Premchand Maisnam and Samrat Adhikari*. Bioinformatics Centre, Department of Biotechnology, St. Edmund's College, Shillong, Meghalaya, India.

  9. Disease association and inter-connectivity analysis of human brain specific co-expressed functional modules.

    Science.gov (United States)

    Oh, Kimin; Hwang, Taeho; Cha, Kihoon; Yi, Gwan-Su

    2015-12-16

    In the recent studies, it is suggested that the analysis of transcriptomic change of functional modules instead of individual genes would be more effective for system-wide identification of cellular functions. This could also provide a new possibility for the better understanding of difference between human and chimpanzee. In this study, we analyzed to find molecular characteristics of human brain functions from the difference of transcriptome between human and chimpanzee's brain using the functional module-centric co-expression analysis. We performed analysis of brain disease association and systems-level connectivity of species-specific co-expressed functional modules. Throughout the analyses, we found human-specific functional modules and significant overlap between their genes in known brain disease genes, suggesting that human brain disorder could be mediated by the perturbation of modular activities emerged in human brain specialization. In addition, the human-specific modules having neurobiological functions exhibited higher networking than other functional modules. This finding suggests that the expression of neural functions are more connected than other functions, and the resulting high-order brain functions could be identified as a result of consolidated inter-modular gene activities. Our result also showed that the functional module based transcriptome analysis has a potential to expand molecular understanding of high-order complex functions like cognitive abilities and brain disorders.

  10. A Model for Teaching Literary Analysis Using Systemic Functional Grammar

    Science.gov (United States)

    McCrocklin, Shannon; Slater, Tammy

    2017-01-01

    This article introduces an approach that middle-school teachers can follow to help their students carry out linguistic-based literary analyses. As an example, it draws on Systemic Functional Grammar (SFG) to show how J.K. Rowling used language to characterize Hermione as an intelligent female in "Harry Potter and the Deathly Hallows."…

  11. Therapist Effects on Functional Analysis Outcomes with Young Children

    Science.gov (United States)

    Huete, John M.; Kurtz, Patricia F.

    2010-01-01

    Analog functional analyses (FAs) are commonly used to assess factors that maintain problem behavior of individuals with intellectual disabilities. These analyses are usually conducted by trained staff in clinic settings. However, recent research suggests that FAs conducted by unfamiliar individuals, such as hospital or clinic staff, may result in…

  12. An Acoustic Analysis of Prosody in High-Functioning Autism

    Science.gov (United States)

    Diehl, Joshua J.; Watson, Duane; Bennetto, Loisa; McDonough, Joyce; Gunlogson, Christine

    2009-01-01

    This paper examined the fundamental frequency variation in the narratives of individuals with high-functioning autism (HFA) and typical controls matched on age, IQ, and verbal abilities. Study 1 found increased fundamental frequency variation in the speech of 21 children and adolescents with HFA when compared to 21 typical controls. Study 2…

  13. Molecular characterization and functional analysis of plant WRKY ...

    African Journals Online (AJOL)

    This review describes the current knowledge about their molecular, structural and functional characteristics, including the alternative splicing, the response to biotic and abiotic stress, the senescence, the morphological architecture and the evolution. It shows that WRKY transcription factors play a crucial role in plants' ...

  14. Domain-oriented functional analysis based on expression profiling

    Directory of Open Access Journals (Sweden)

    Greene Jonathan

    2002-10-01

    Full Text Available Abstract Background Co-regulation of genes may imply involvement in similar biological processes or related function. Many clusters of co-regulated genes have been identified using microarray experiments. In this study, we examined co-regulated gene families using large-scale cDNA microarray experiments on the human transcriptome. Results We present a simple model, which, for each probe pair, distills expression changes into binary digits and summarizes the expression of multiple members of a gene family as the Family Regulation Ratio. The set of Family Regulation Ratios for each protein family across multiple experiments is called a Family Regulation Profile. We analyzed these Family Regulation Profiles using Pearson Correlation Coefficients and derived a network diagram portraying relationships between the Family Regulation Profiles of gene families that are well represented on the microarrays. Our strategy was cross-validated with two randomly chosen data subsets and was proven to be a reliable approach. Conclusion This work will help us to understand and identify the functional relationships between gene families and the regulatory pathways in which each family is involved. Concepts presented here may be useful for objective clustering of protein functions and deriving a comprehensive protein interaction map. Functional genomic approaches such as this may also be applicable to the elucidation of complex genetic regulatory networks.

  15. Genome-wide identification, functional analysis and expression ...

    African Journals Online (AJOL)

    Fuyou Fu

    2013-07-24

    Jul 24, 2013 ... PDR genes have been researched to have many biology functions, such as exporting xenobiotics (Kolaczkowski et al., 1996) and antifungal drug ... Campbell et al., 2003; Moons, 2003; Ducos et al., 2005). Having the Potato Genome Sequence Consortium. (PGSC) finished in 2011(Xu et al., 2011), it is very ...

  16. Rhinoscintigraphic analysis of nasal mucociliary function in patients ...

    African Journals Online (AJOL)

    2015-11-02

    Nov 2, 2015 ... 9. Englender M, Chamovitz D, Harell M. Nasal transit time in normal subjects and pathologic conditions. Otolaryngol Head Neck Surg 1990;103:909‑12. 10. Sun SS, Hsieh JF, Tsai SC, Ho YJ, Kao CH. Evaluation of nasal mucociliary clearance function in allergic rhinitis patients with technetium 99m‑labeled.

  17. Analysis of the transfer function for layered piezoelectric ultrasonic sensors

    Science.gov (United States)

    Gutiérrrez-Reyes, E.; García-Segundo, C.; García-Valenzuela, A.; Reyes-Ramírez, B.; Gutiérrez-Juárez, G.; Guadarrama-Santana, A.

    2017-06-01

    We model theoretically the voltage response to an acoustic pulse of a multilayer system forming a low noise capacitive sensor including a Polyvinylidene Fluoride piezoelectric film. First we model a generic piezoelectric detector consisting of a piezoelectric film between two metallic electrodes that are the responsible to convert the acoustic signal into a voltage signal. Then we calculate the pressure-to-voltage transfer function for a N-layer piezo-electric capacitor detector, allowing to study the effects of the electrode and protective layers thickness in typical layered piezoelectric sensors. The derived transfer function, when multiplied by the Fourier transform of the incident acoustic pulse, gives the voltage electric response in the frequency domain. An important concern regarding the transfer function is that it may have zeros at specific frequencies, and thus inverting the voltage Fourier transform of the pulse to recover the pressure signal in the time domain is not always, in principle, possible. Our formulas can be used to predict the existence and locations of such zeroes. We illustrate the use of the transfer function by predicting the electric signal generated at a multilayer piezoelectric sensor to an ultrasonic pulse generated photoacoustically by a laser pulse at a three media system with impedance mismatch. This theoretical calculations are compared with our own experimental measurements.

  18. Analysis of the transfer function for layered piezoelectric ultrasonic sensors

    Directory of Open Access Journals (Sweden)

    E. Gutiérrrez-Reyes

    2017-06-01

    Full Text Available We model theoretically the voltage response to an acoustic pulse of a multilayer system forming a low noise capacitive sensor including a Polyvinylidene Fluoride piezoelectric film. First we model a generic piezoelectric detector consisting of a piezoelectric film between two metallic electrodes that are the responsible to convert the acoustic signal into a voltage signal. Then we calculate the pressure-to-voltage transfer function for a N-layer piezo-electric capacitor detector, allowing to study the effects of the electrode and protective layers thickness in typical layered piezoelectric sensors. The derived transfer function, when multiplied by the Fourier transform of the incident acoustic pulse, gives the voltage electric response in the frequency domain. An important concern regarding the transfer function is that it may have zeros at specific frequencies, and thus inverting the voltage Fourier transform of the pulse to recover the pressure signal in the time domain is not always, in principle, possible. Our formulas can be used to predict the existence and locations of such zeroes. We illustrate the use of the transfer function by predicting the electric signal generated at a multilayer piezoelectric sensor to an ultrasonic pulse generated photoacoustically by a laser pulse at a three media system with impedance mismatch. This theoretical calculations are compared with our own experimental measurements.

  19. Analysis of some functional properties of acetic acid bacteria ...

    African Journals Online (AJOL)

    Objective: To investigate some functional properties of acetic acid bacteria (AAB), involved in Côte d'Ivoire cocoa fermentation. Methods and results: Six day heap fermentation on banana leaves was conducted at farm level and AAB growth was monitored during this process at 24 h interval by numeration on plate agar.

  20. Bond energy decomposition analysis for subsystem density functional theory

    NARCIS (Netherlands)

    Beyhan, S.M.; Gotz, A.W.; Visscher, L.

    2013-01-01

    We employed an explicit expression for the dispersion (D) energy in conjunction with Kohn-Sham (KS) density functional theory and frozen-density embedding (FDE) to calculate interaction energies between DNA base pairs and a selected set of amino acid pairs in the hydrophobic core of a small protein

  1. Cloning and functional analysis in transgenic tobacco of a tapetum ...

    African Journals Online (AJOL)

    The 5'-flanking region of 1174 bp upstream of the translation start point (TSP) of a reported Arabidopsis anther-specific gene, Anther7 gene (ATA7), which putatively encodes a protein related to lipid transfer protein, was cloned and functionally analyzed in transgenic tobacco after been fused with β- glucuronidase (GUS) ...

  2. Intraoperative mapping of language functions: a longitudinal neurolinguistic analysis.

    Science.gov (United States)

    Ilmberger, Josef; Ruge, Maximilian; Kreth, Friedrich-Wilhelm; Briegel, Josef; Reulen, Hans-Juergen; Tonn, Joerg-Christian

    2008-10-01

    This prospective longitudinally designed study was conducted to evaluate language functions pre- and postoperatively in patients who underwent microsurgical treatment of tumors in close proximity to or within language areas and to detect those patients at risk for a postoperative aphasic disturbance. Between 1991 and 2005, 153 awake craniotomies with subsequent cortical mapping of language functions were performed in 149 patients. Language functions were assessed using a standardized test battery. Risk factors were obtained from multivariate logistic regression models. Language mapping was able to be performed in all patients, and complete tumor resection was achieved in 48.4%. Within 21 days after surgery a new language deficit (aphasic disturbance) was observed in 41 (32%) of the 128 cases without preoperative deficits. There were a total of 60 cases involving postoperative aphasic disturbances, including cases both with and without preoperative disturbances. Risk factors for postoperative aphasic disturbance were preoperative aphasia (p40 years, p<0.02) and preoperative aphasia (p<0.001). Every attempt should be undertaken to preserve language-relevant areas intraoperatively, even when they are located within the tumor. New postoperative deficits resolve in the majority of patients, which may be a result of cortical mapping as well as functional reorganization.

  3. Functional and genetic analysis of choroid plexus development in zebrafish

    Science.gov (United States)

    Henson, Hannah E.; Parupalli, Chaithanyarani; Ju, Bensheng; Taylor, Michael R.

    2014-01-01

    The choroid plexus, an epithelial-based structure localized in the brain ventricle, is the major component of the blood-cerebrospinal fluid barrier. The choroid plexus produces the cerebrospinal fluid and regulates the components of the cerebrospinal fluid. Abnormal choroid plexus function is associated with neurodegenerative diseases, tumor formation in the choroid plexus epithelium, and hydrocephaly. In this study, we used zebrafish (Danio rerio) as a model system to understand the genetic components of choroid plexus development. We generated an enhancer trap line, Et(cp:EGFP)sj2, that expresses enhanced green fluorescent protein (EGFP) in the choroid plexus epithelium. Using immunohistochemistry and fluorescent tracers, we demonstrated that the zebrafish choroid plexus possesses brain barrier properties such as tight junctions and transporter activity. Thus, we have established zebrafish as a functionally relevant model to study choroid plexus development. Using an unbiased approach, we performed a forward genetic dissection of the choroid plexus to identify genes essential for its formation and function. Using Et(cp:EGFP)sj2, we isolated 10 recessive mutant lines with choroid plexus abnormalities, which were grouped into five classes based on GFP intensity, epithelial localization, and overall choroid plexus morphology. We also mapped the mutation for two mutant lines to chromosomes 4 and 21, respectively. The mutants generated in this study can be used to elucidate specific genes and signaling pathways essential for choroid plexus development, function, and/or maintenance and will provide important insights into how these genetic mutations contribute to disease. PMID:25426018

  4. Chronic job burnout and daily functioning: A theoretical analysis

    NARCIS (Netherlands)

    A.B. Bakker (Arnold); P.L. Costa (Patrícia Lopes)

    2014-01-01

    textabstractIn this article, we discuss the individual employee's role in the development of his/her job burnout. We review the antecedents and consequences of burnout, and propose a model with chronic burnout as a moderator of daily functioning in the workplace. Specifically, we argue that chronic

  5. Linking Design to Business Strategy Through Functional Analysis

    DEFF Research Database (Denmark)

    Simonsen, Jesper

    1997-01-01

    The paper discusses how designers, conducting design projects in specific organization's, can assure that the design of IT is appropriately linked to the organizations overall business strategy. A case study is presented in the form of a design project in a small public organization. Functional a...

  6. Whole-genome sequence-based analysis of thyroid function

    DEFF Research Database (Denmark)

    Taylor, Peter N.; Porcu, Eleonora; Chew, Shelby

    2015-01-01

    Normal thyroid function is essential for health, but its genetic architecture remains poorly understood. Here, for the heritable thyroid traits thyrotropin (TSH) and free thyroxine (FT4), we analyse whole-genome sequence data from the UK10K project (N = 2,287). Using additional whole-genome seque...

  7. [Basics of esthetic and functional cephalometric analysis of the profile].

    Science.gov (United States)

    Gola, R; Cheynet, F; Guyot, L; Richard, O

    2004-12-01

    We report a new cephalometric method for profile analysis, which uses strictly exobasicranial landmarks: 13 anatomic points, 9 bone points and 4 skin points. The analysis is based on phylogenetic, ontogenetic, anatomic and biomechanical data. Phylogenetic analysis reveals that the occipital plate belongs more to the cranial vault than the base of the skull. Embryology shows that on the midline the facial skull base ends at the spheno-occipital suture and that the overall skull base ends at the basion. The pre-maxillary fuses rapidly to the maxillary, while the pterygoid processes, which belong to the face and not the skull base, fusion very rapidly to the skull base. Revisiting the anatomy of the facial skull base shows that it is prolonged posteriorly medially to meast the synostosic creast and latterally to the glenoid fossae. Further anatomic analysis shows that the dentate and muscular part of the superior level of the facial mass correspond to equivalent parts of the inferior mandibular level. The biomechanical analysis reveals that the anterior pillar passes through the pre-maxillary, ending on the supra-orbital border and the glabella and as such belongs to the face. The posterior pillar follows the pterygoid process ending in the sphenoid. The glabella and these two pillars are taken into account in this new analysis technique.

  8. Analysis of the proton longitudinal structure function from the gluon distribution function

    Energy Technology Data Exchange (ETDEWEB)

    Boroun, G.R.; Rezaei, B. [Razi University, Physics Department, Kermanshah (Iran, Islamic Republic of)

    2012-11-15

    We make a critical, next-to-leading order, study of the relationship between the longitudinal structure function F{sub L} and the gluon distribution proposed in Cooper-Sarkar et al. (Z. Phys. C 39:281, 1988; Acta Phys. Pol. B 34:2911 2003), which is frequently used to extract the gluon distribution from the proton longitudinal structure function at small x. The gluon density is obtained by expanding at particular choices of the point of expansion and compared with the hard Pomeron behavior for the gluon density. Comparisons with H1 data are made and predictions for the proposed best approach are also provided. (orig.)

  9. Control-flow analysis of function calls and returns by abstract interpretation

    DEFF Research Database (Denmark)

    Midtgaard, Jan; Jensen, Thomas P.

    2009-01-01

    We derive a control-flow analysis that approximates the interprocedural control-flow of both function calls and returns in the presence of first-class functions and tail-call optimization. In addition to an abstract environment, our analysis computes for each expression an abstract control stack,...

  10. Functional analysis of aberrant behavior through measurement of separate response topographies.

    OpenAIRE

    Derby, K M; Hagopian, L; Fisher, W W; Richman, D; Augustine, M; Fahs, A; Thompson, R

    2000-01-01

    Functional analysis results for multiple topographies of aberrant behavior were graphed in an aggregate fashion and then separately for 48 clients. The results indicated that multiple topographies of behavior may be maintained by different contingencies. These results indicate that graphing functional analysis data in an aggregate fashion and then separately may improve the accuracy of their interpretation.

  11. Psychometric Properties on Lecturers' Beliefs on Teaching Function: Rasch Model Analysis

    Science.gov (United States)

    Mofreh, Samah Ali Mohsen; Ghafar, Mohammed Najib Abdul; Omar, Abdul Hafiz Hj; Mosaku, Monsurat; Ma'ruf, Amar

    2014-01-01

    This paper focuses on the psychometric analysis of lecturers' beliefs on teaching function (LBTF) survey using Rasch Model analysis. The sample comprised 34 Community Colleges' lecturers. The Rasch Model is applied to produce specific measurements on the lecturers' beliefs on teaching function in order to generalize results and inferential…

  12. A functional genomics approach using metabolomics and in silico pathway analysis

    DEFF Research Database (Denmark)

    Förster, Jochen; Gombert, Andreas Karoly; Nielsen, Jens

    2002-01-01

    In the field of functional genomics increasing effort is being undertaken to analyze the function of orphan genes using metabolome data. Improved analytical equipment allows screening simultaneously for a high number of metabolites. Such metabolite profiles are analyzed using multivariate data...... analysis. Pathway analysis may be carried out using convex analysis and a change in the active pathway structure of deletion mutants expressed in a different metabolite profile may disclose the function or the functional class of an orphan gene. The concept is illustrated using a simplified model...

  13. Complex analysis fundamentals of the classical theory of functions

    CERN Document Server

    Stalker, John

    1998-01-01

    This clear, concise introduction to the classical theory of one complex variable is based on the premise that "anything worth doing is worth doing with interesting examples." The content is driven by techniques and examples rather than definitions and theorems. This self-contained monograph is an excellent resource for a self-study guide and should appeal to a broad audience. The only prerequisite is a standard calculus course. The first chapter deals with a beautiful presentation of special functions. . . . The third chapter covers elliptic and modular functions. . . in much more detail, and from a different point of view, than one can find in standard introductory books. . . . For [the] subjects that are omitted, the author has suggested some excellent references for the reader who wants to go through these topics. The book is read easily and with great interest. It can be recommended to both students as a textbook and to mathematicians and physicists as a useful reference. ---Mathematical Reviews Mainly or...

  14. Massively Parallel Functional Analysis of BRCA1 RING Domain Variants.

    Science.gov (United States)

    Starita, Lea M; Young, David L; Islam, Muhtadi; Kitzman, Jacob O; Gullingsrud, Justin; Hause, Ronald J; Fowler, Douglas M; Parvin, Jeffrey D; Shendure, Jay; Fields, Stanley

    2015-06-01

    Interpreting variants of uncertain significance (VUS) is a central challenge in medical genetics. One approach is to experimentally measure the functional consequences of VUS, but to date this approach has been post hoc and low throughput. Here we use massively parallel assays to measure the effects of nearly 2000 missense substitutions in the RING domain of BRCA1 on its E3 ubiquitin ligase activity and its binding to the BARD1 RING domain. From the resulting scores, we generate a model to predict the capacities of full-length BRCA1 variants to support homology-directed DNA repair, the essential role of BRCA1 in tumor suppression, and show that it outperforms widely used biological-effect prediction algorithms. We envision that massively parallel functional assays may facilitate the prospective interpretation of variants observed in clinical sequencing. Copyright © 2015 by the Genetics Society of America.

  15. Next Generation Nuclear Plant Resilient Control System Functional Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Lynne M. Stevens

    2010-07-01

    Control Systems and their associated instrumentation must meet reliability, availability, maintainability, and resiliency criteria in order for high temperature gas-cooled reactors (HTGRs) to be economically competitive. Research, perhaps requiring several years, may be needed to develop control systems to support plant availability and resiliency. This report functionally analyzes the gaps between traditional and resilient control systems as applicable to HTGRs, which includes the Next Generation Nuclear Plant; defines resilient controls; assesses the current state of both traditional and resilient control systems; and documents the functional gaps existing between these two controls approaches as applicable to HTGRs. This report supports the development of an overall strategy for applying resilient controls to HTGRs by showing that control systems with adequate levels of resilience perform at higher levels, respond more quickly to disturbances, increase operational efficiency, and increase public protection.

  16. Functional clustering algorithm for the analysis of dynamic network data

    Science.gov (United States)

    Feldt, S.; Waddell, J.; Hetrick, V. L.; Berke, J. D.; Żochowski, M.

    2009-05-01

    We formulate a technique for the detection of functional clusters in discrete event data. The advantage of this algorithm is that no prior knowledge of the number of functional groups is needed, as our procedure progressively combines data traces and derives the optimal clustering cutoff in a simple and intuitive manner through the use of surrogate data sets. In order to demonstrate the power of this algorithm to detect changes in network dynamics and connectivity, we apply it to both simulated neural spike train data and real neural data obtained from the mouse hippocampus during exploration and slow-wave sleep. Using the simulated data, we show that our algorithm performs better than existing methods. In the experimental data, we observe state-dependent clustering patterns consistent with known neurophysiological processes involved in memory consolidation.

  17. Research Progress on Functional Analysis of Rice WRKY Genes

    Directory of Open Access Journals (Sweden)

    Yu SONG

    2010-03-01

    Full Text Available Rice is a model plant for genomic study of grass species. Functional identification and definition of rice genes becomes the object of its functional genomics research. WRKY gene superfamily, one of the transcription factor gene families, was recently suggested to play important roles in plant development and stress response. In rice, the results of analyses of expression pattern and ectopic overexpressor lines also support this viewpoint, and the evidences implicate rice WRKY proteins in transcriptional reprogramming during biotic or abiotic stresses, senescence, sugar metabolites, and morphological architecture. In this paper, we review the advance in study of rice WRKY gene family and also propose unified nomenclature for rice WRKY factors to eliminate confusion.

  18. Wavelet analysis of MR functional data from the cerebellum

    Energy Technology Data Exchange (ETDEWEB)

    Karen, Romero Sánchez, E-mail: alphacentauri-hp@hotmail.com, E-mail: marcos-vaquezr@hotmail.com, E-mail: isabeldgg@hotmail.com; Vásquez Reyes Marcos, A., E-mail: alphacentauri-hp@hotmail.com, E-mail: marcos-vaquezr@hotmail.com, E-mail: isabeldgg@hotmail.com; González Gómez Dulce, I., E-mail: alphacentauri-hp@hotmail.com, E-mail: marcos-vaquezr@hotmail.com, E-mail: isabeldgg@hotmail.com; Hernández López, Javier M., E-mail: javierh@fcfm.buap.mx [Faculty of Physics and Mathematics, BUAP, Puebla, Pue (Mexico); Silvia, Hidalgo Tobón, E-mail: shidbon@gmail.com [Infant Hospital of Mexico, Federico Gómez, Mexico DF. Mexico and Physics Department, Universidad Autónoma Metropolitana. Iztapalapa, Mexico DF. (Mexico); Pilar, Dies Suarez, E-mail: pilydies@yahoo.com, E-mail: neurodoc@prodigy.net.mx; Eduardo, Barragán Pérez, E-mail: pilydies@yahoo.com, E-mail: neurodoc@prodigy.net.mx [Infant Hospital of Mexico, Federico Gómez, Mexico DF. (Mexico); Benito, De Celis Alonso, E-mail: benileon@yahoo.com [Faculty of Physics and Mathematics, BUAP, Puebla, Pue. Mexico and Foundation for Development Carlos Sigüenza. Puebla, Pue. (Mexico)

    2014-11-07

    The main goal of this project was to create a computer algorithm based on wavelet analysis of BOLD signals, which automatically diagnosed ADHD using information from resting state MR experiments. Male right handed volunteers (infants with ages between 7 and 11 years old) were studied and compared with age matched controls. Wavelet analysis, which is a mathematical tool used to decompose time series into elementary constituents and detect hidden information, was applied here to the BOLD signal obtained from the cerebellum 8 region of all our volunteers. Statistical differences between the values of the a parameters of wavelet analysis was found and showed significant differences (p<0.02) between groups. This difference might help in the future to distinguish healthy from ADHD patients and therefore diagnose ADHD.

  19. Recent applications of harmonic analysis to function spaces, differential equations, and data science novel methods in harmonic analysis

    CERN Document Server

    Gia, Quoc; Mayeli, Azita; Mhaskar, Hrushikesh; Zhou, Ding-Xuan

    2017-01-01

    The second of a two volume set on novel methods in harmonic analysis, this book draws on a number of original research and survey papers from well-known specialists detailing the latest innovations and recently discovered links between various fields. Along with many deep theoretical results, these volumes contain numerous applications to problems in signal processing, medical imaging, geodesy, statistics, and data science. The chapters within cover an impressive range of ideas from both traditional and modern harmonic analysis, such as: the Fourier transform, Shannon sampling, frames, wavelets, functions on Euclidean spaces, analysis on function spaces of Riemannian and sub-Riemannian manifolds, Fourier analysis on manifolds and Lie groups, analysis on combinatorial graphs, sheaves, co-sheaves, and persistent homologies on topological spaces. Volume II is organized around the theme of recent applications of harmonic analysis to function spaces, differential equations, and data science, covering topics such a...

  20. Depression vs. Dementia: A comparative analysis of neuropsychological functions

    OpenAIRE

    Ivana Leposavić; Ljubica Leposavić; Predrag Gavrilović

    2010-01-01

    Previous studies concerned with neuropsychological aspect of depression, detected comparatively specific profile of cognitive deficiencies, including the disorders of attention, memory and executive functions. Although the classical depression is recognized as psuedodementia, or reversible dementia, these two entities frequently overlap in the elder population. Many patients who are at first depressive, become demented later, and the initial stages of dementia are not rarely accompanied with ...

  1. Finite Element and Experimental Analysis of Function of Plastic Clips

    OpenAIRE

    Honarpardaz, Mohammad Mahdi

    2011-01-01

    The aim of this work is to investigate the function of plastic clips which are used to join different parts, during mounting and dismounting processes. The clips are made of POM and will be mounted on steel plates. The study is undertaken using experimental and numerical methods. In experiments, the mounting and dismounting forces are measured with respect to vertical displacement of the clips related to the plate. The numerical method is performed using structural implicit non-linear quasi-s...

  2. Excelling with Excel: Advanced Excel Functions for Collection Analysis

    OpenAIRE

    Pan, Denise; Wiersma, Gabrielle

    2014-01-01

    Microsoft Excel offers useful features and formulas that potentially allow acquisitions and collection development librarians to work smarter, not harder. Using journal cancellations as a workplace scenario, the presenters will provide attendees with ideas on how to organize data and complete basic calculations with Excel. The presenters provide examples on how to use several advanced Excel functions including PivotTables, VLOOKUP, and select formulas. They describe the steps for importing an...

  3. [Analysis of the effect of lithium salts on cognitive functions].

    Science.gov (United States)

    Dassò, L; Campari, F; Bocelli, G; Mozzani, M; De Risio, C

    1982-01-01

    In this work the authors studied the effects of lithium on memory and reaction times in 7 manic-depressive patients receiving long-term therapy. The results suggest lithium treatment does not change these intellectual functions to any significant extent, comparing the trials of the experimental sessions during the therapy and after two weeks off lithium. Our data mostly agree with the studies of other Authors who used similar experimental methods.

  4. Functional Analysis of Glycosylation of Zika Virus Envelope Protein

    OpenAIRE

    Camila R. Fontes-Garfias; Chao Shan; Huanle Luo; Muruato, Antonio E.; Medeiros, Daniele B.A.; Elizabeth Mays; Xuping Xie; Jing Zou; Roundy, Christopher M; Maki Wakamiya; Rossi, Shannan L.; Tian Wang; Weaver, Scott C.; Pei-Yong Shi

    2017-01-01

    Summary: Zika virus (ZIKV) infection causes devastating congenital abnormities and Guillain-Barré syndrome. The ZIKV envelope (E) protein is responsible for viral entry and represents a major determinant for viral pathogenesis. Like other flaviviruses, the ZIKV E protein is glycosylated at amino acid N154. To study the function of E glycosylation, we generated a recombinant N154Q ZIKV that lacks the E glycosylation and analyzed the mutant virus in mammalian and mosquito hosts. In mouse models...

  5. Analysis of functional CT scan in cervical vertebral disease

    Energy Technology Data Exchange (ETDEWEB)

    Hirofuji, Eiichi; Tanaka, Seisuke; Tomihara, Mitsuo; Kita, Hiroshi; Yamasaki, Hiroyuki

    1982-12-01

    The atlantoaxial joint showed displacement in various directions in rheumatoid arthritis and cervical spondylosis. The displacements were promoted by anterior flexion and rotatory movements, exerting great influences on the spnial cord. The intervertebral space between the 5th and 6th vertebra showed narrowing of the vertebral canal in cervical spondylosis and was promoted by posterior flexion to affect the spinal cord to a great extent. Functional CT scan was useful for observation of pathologic conditions of vertebral diseases.

  6. Correlation Function Analysis of Fiber Networks: Implications for Thermal Conductivity

    Science.gov (United States)

    Martinez-Garcia, Jorge; Braginsky, Leonid; Shklover, Valery; Lawson, John W.

    2011-01-01

    The heat transport in highly porous fiber structures is investigated. The fibers are supposed to be thin, but long, so that the number of the inter-fiber connections along each fiber is large. We show that the effective conductivity of such structures can be found from the correlation length of the two-point correlation function of the local conductivities. Estimation of the parameters, determining the conductivity, from the 2D images of the structures is analyzed.

  7. Functional analysis after supracricoid partial laryngectomy with cricohyoidoepiglottopexy.

    Science.gov (United States)

    Bron, Luc; Pasche, Philippe; Brossard, Edgar; Monnier, Philippe; Schweizer, Velérie

    2002-07-01

    To assess prospectively speech and swallowing function in a series of 17 patients after supracricoid partial laryngectomy with cricohyoidoepiglottopexy. Retrospective study. From 1983 to 1996, 69 patients at Department of Otolaryngology-Head and Neck Surgery, CHUV (Lausanne, Switzerland) underwent a supracricoid partial laryngectomy with cricohyoidoepiglottopexy. Seventeen of them (25%) could be contacted and accepted participation in a functional evaluation that included a questionnaire to document their present nutritional status and diet. A formal voice evaluation was also performed, which included psychoacoustic evaluation of vocal qualities, fundamental frequency parameters, phonation intensity range, phonatory quotient (vital capacity divided by maximum phonation time), and a laryngeal video laryngoscopy performed with a rigid endoscope. Median postoperative follow-up was 66 months (range, 12-152 mo). Nine of 17 patients (53%) recovered a normal diet with no increased incidence of aspirations. Seven of 17 had minor limitations such as no peanuts, dry bread, or rice. Two of 17 patients were restricted to pureed food. Assessment of voice showed a clearly decreased mean fundamental frequency at 70.1 Hz (normal range, 121-211 Hz) and a narrowed frequency range of phonation with a mean value of 8.8 semitones (normal value, 27). Forty-two percent of the patients went back to their normal professional life after the operation. Among the 10 who did not, 3 (16%) retired and 7 actually had to give up their profession, because of the modification of their voice or general asthenia and age close to retirement. Restoration of laryngeal function after supracricoid partial laryngectomy with cricohyoidoepiglottopexy is satisfactory. Although most of the patients seem to recover normal swallowing function, severe voice alterations appear to be inevitable.

  8. A Biomechanical Analysis Of Craniofacial Form And Function

    Science.gov (United States)

    Oyen, Ordean J.

    1989-04-01

    In vivo measures of bite force and bone strain obtained in growing African green monkeys (Cercopeithecus aethiops) are being used to study skull biology and geometry. Strain values and distributional patterns seen in association with forceful jaw elevation are inconsistent with conventional explanations linking upper facial morphology with masticatory function and/or using beam models of craniofacial architecture. These results mandate careful use of notions about skeletal geometry based on static analyses that have not been experimentally verified using in vivo procedures.

  9. Quantitative Analysis of the Effective Functional Structure in Yeast Glycolysis

    OpenAIRE

    Cortes, Jesus M.; Ildefonso M. De la Fuente

    2010-01-01

    Yeast glycolysis is considered the prototype of dissipative biochemical oscillators. In cellular conditions, under sinusoidal source of glucose, the activity of glycolytic enzymes can display either periodic, quasiperiodic or chaotic behavior. In order to quantify the functional connectivity for the glycolytic enzymes in dissipative conditions we have analyzed different catalytic patterns using the non-linear statistical tool of Transfer Entropy. The data were obtained by means of a yeast gly...

  10. Depression vs. Dementia: A comparative analysis of neuropsychological functions

    Directory of Open Access Journals (Sweden)

    Ivana Leposavić

    2010-06-01

    Full Text Available Previous studies concerned with neuropsychological aspect of depression, detected comparatively specific profile of cognitive deficiencies, including the disorders of attention, memory and executive functions. Although the classical depression is recognized as psuedodementia, or reversible dementia, these two entities frequently overlap in the elder population. Many patients who are at first depressive, become demented later, and the initial stages of dementia are not rarely accompanied with mood changes. The aim of this study is the establishing of differences between neuropsychological profiles of depression and dementia. The sample included three groups: the first group represented the patients with endogenous depression, the second – the patients with dementia, and the third one – healthy individuals. The participants have been tested by a neuropsychological battery. Two patient groups were tested during the stage of remission/adequate mood. Abilities most susceptible to depression are: attention, executive functions and memory. Cognitive flexibility and general cognitive ability are preserved in depressive patients. Depressive patients express cognitive disorders of moderate degree during the remission stage. Impairment pattern in the group of depressive patients does not indicate intellectual degradation of the dementia type. Neuropsychological deficiencies of the patients with endogenous depression suggest frontal limbic dysfunction. Еxcesses in cognitive functioning of demented patients are more serious and massive in comparison with cognitive difficulties in depressive patients.

  11. Assessment of GIC Based On Transfer Function Analysis

    Science.gov (United States)

    Ingham, M.; Rodger, C. J.; Divett, T.; Dalzell, M.; Petersen, T.

    2017-12-01

    Transfer functions are calculated for periods between 2 and 1,000 min between geomagnetically induced currents (GIC) measured at three transformers in the South Island of New Zealand and variations in the horizontal components of the geomagnetic field measured at the Eyrewell Observatory near Christchurch. Using an inverse Fourier transform, the transfer functions allow the GIC expected in these transformers to be estimated for any variation of the inducing magnetic field. Comparison of the predicted GIC with measured GIC for individual geomagnetic storms shows remarkable agreement, although the lack of high-frequency measurements of GIC and the need for interpolation of the measurements lead to a degree of underestimation of the peak GIC magnitude. An approximate correction for this is suggested. Calculation of the GIC for a magnetic storm in November 2001 that led to the failure of a transformer in Dunedin suggests that peak GIC were as large as about 80 A. Use of spectral scaling to estimate the likely GIC associated with a geomagnetic storm of the magnitude of the 1859 Carrington Event indicates that GIC of at least 10 times this magnitude may occur at some locations. Although the impact of changes to the transmission network on calculated transfer functions remains to be explored, it is suggested that the use of this technique may provide a useful check on estimates of GIC produced by other methods such as thin sheet modeling.

  12. Graph theoretical analysis of EEG functional connectivity during music perception.

    Science.gov (United States)

    Wu, Junjie; Zhang, Junsong; Liu, Chu; Liu, Dongwei; Ding, Xiaojun; Zhou, Changle

    2012-11-05

    The present study evaluated the effect of music on large-scale structure of functional brain networks using graph theoretical concepts. While most studies on music perception used Western music as an acoustic stimulus, Guqin music, representative of Eastern music, was selected for this experiment to increase our knowledge of music perception. Electroencephalography (EEG) was recorded from non-musician volunteers in three conditions: Guqin music, noise and silence backgrounds. Phase coherence was calculated in the alpha band and between all pairs of EEG channels to construct correlation matrices. Each resulting matrix was converted into a weighted graph using a threshold, and two network measures: the clustering coefficient and characteristic path length were calculated. Music perception was found to display a higher level mean phase coherence. Over the whole range of thresholds, the clustering coefficient was larger while listening to music, whereas the path length was smaller. Networks in music background still had a shorter characteristic path length even after the correction for differences in mean synchronization level among background conditions. This topological change indicated a more optimal structure under music perception. Thus, prominent small-world properties are confirmed in functional brain networks. Furthermore, music perception shows an increase of functional connectivity and an enhancement of small-world network organizations. Copyright © 2012 Elsevier B.V. All rights reserved.

  13. Functional Analysis of Jasmonates in Rice through Mutant Approaches

    Directory of Open Access Journals (Sweden)

    Rohit Dhakarey

    2016-03-01

    Full Text Available Jasmonic acid, one of the major plant hormones, is, unlike other hormones, a lipid-derived compound that is synthesized from the fatty acid linolenic acid. It has been studied intensively in many plant species including Arabidopsis thaliana, in which most of the enzymes participating in its biosynthesis were characterized. In the past 15 years, mutants and transgenic plants affected in the jasmonate pathway became available in rice and facilitate studies on the functions of this hormone in an important crop. Those functions are partially conserved compared to other plant species, and include roles in fertility, response to mechanical wounding and defense against herbivores. However, new and surprising functions have also been uncovered by mutant approaches, such as a close link between light perception and the jasmonate pathway. This was not only useful to show a phenomenon that is unique to rice but also helped to establish this role in plant species where such links are less obvious. This review aims to provide an overview of currently available rice mutants and transgenic plants in the jasmonate pathway and highlights some selected roles of jasmonate in this species, such as photomorphogenesis, and abiotic and biotic stress.

  14. A displaced-solvent functional analysis of model hydrophobic enclosures.

    Science.gov (United States)

    Abel, Robert; Wang, Lingle; Friesner, Richard A; Berne, B J

    2010-08-20

    Calculation of protein-ligand binding affinities continues to be a hotbed of research. Although many techniques for computing protein-ligand binding affinities have been introduced--ranging from computationally very expensive approaches, such as free energy perturbation (FEP) theory; to more approximate techniques, such as empirically derived scoring functions, which, although computationally efficient, lack a clear theoretical basis--there remains pressing need for more robust approaches. A recently introduced technique, the displaced-solvent functional (DSF) method, was developed to bridge the gap between the high accuracy of FEP and the computational efficiency of empirically derived scoring functions. In order to develop a set of reference data to test the DSF theory for calculating absolute protein-ligand binding affinities, we have pursued FEP theory calculations of the binding free energies of a methane ligand with 13 different model hydrophobic enclosures of varying hydrophobicity. The binding free energies of the methane ligand with the various hydrophobic enclosures were then recomputed by DSF theory and compared with the FEP reference data. We find that the DSF theory, which relies on no empirically tuned parameters, shows excellent quantitative agreement with the FEP. We also explored the ability of buried solvent accessible surface area and buried molecular surface area models to describe the relevant physics, and find the buried molecular surface area model to offer superior performance over this dataset.

  15. Analysis of Spo0M function in Bacillus subtilis.

    Directory of Open Access Journals (Sweden)

    Luz Adriana Vega-Cabrera

    Full Text Available Spo0M has been previously reported as a regulator of sporulation in Bacillus subtilis; however, little is known about the mechanisms through which it participates in sporulation, and there is no information to date that relates this protein to other processes in the bacterium. In this work we present evidence from proteomic, protein-protein interaction, morphological, subcellular localization microscopy and bioinformatics studies which indicate that Spo0M function is not necessarily restricted to sporulation, and point towards its involvement in other stages of the vegetative life cycle. In the current study, we provide evidence that Spo0M interacts with cytoskeletal proteins involved in cell division, which suggest a function additional to that previously described in sporulation. Spo0M expression is not restricted to the transition phase or sporulation; rather, its expression begins during the early stages of growth and Spo0M localization in B. subtilis depends on the bacterial life cycle and could be related to an additional proposed function. This is supported by our discovery of homologs in a broad distribution of bacterial genera, even in non-sporulating species. Our work paves the way for re-evaluation of the role of Spo0M in bacterial cell.

  16. Dental indications for the instrumental functional analysis in additional consideration of health-economic aspects

    OpenAIRE

    Willich, Stefan N.; Greiner, Wolfgang; Vauth, Christoph; Roll, Stephanie; Tinnemann, Peter

    2010-01-01

    Background: Besides clinical and radiological examination instrumental functional analyses are performed as diagnostic procedures for craniomandibular dysfunctions. Instrumental functional analyses cause substantial costs and shows a considerable variability between individual dentist practices. Objectives: On the basis of published scientific evidence the validity of the instrumental functional analysis for the diagnosis of craniomandibular dysfunctions compared to clinical diagnostic proced...

  17. Next-to-leading order QCD analysis of parton distribution functions with LHC data

    Science.gov (United States)

    Vafaee, A.; Khorramian, A.

    2017-01-01

    We present a next-to-leading order (NLO) QCD fit of parton distribution functions (PDFs) with and without the LHC data. In this analysis, we use the HERA I+II combine inclusive proton DIS cross sections, H1-ZEUS combined charm structure function, SLAC structure function, and EMC charm structure data as a base data, and then we investigate the effect of LHC data on the determination of PDFs. Our analysis and PDFs extraction is performed by xFitter framework.

  18. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions

    DEFF Research Database (Denmark)

    Pendle, Alison F; Clark, Gillian P; Boon, Reinier

    2005-01-01

    analysis of plant (Arabidopsis thaliana) nucleoli, in which we have identified 217 proteins. This allows a direct comparison of the proteomes of an important nuclear structure between two widely divergent species: human and Arabidopsis. The comparison identified many common proteins, plant...

  19. Use of linear discriminant function analysis in seed morphotype ...

    African Journals Online (AJOL)

    Variation in seed morphology of the Lima bean in 31 accessions was studied. Data were collected on 100-seed weight, seed length and seed width. The differences among the accessions were significant, based on the three seed characteristics. K-means cluster analysis grouped the 31 accessions into four distinct groups, ...

  20. Rhinoscintigraphic analysis of nasal mucociliary function in patients ...

    African Journals Online (AJOL)

    2015-11-02

    Nov 2, 2015 ... Objective: Mucociliary transport (MCT) is an important defense mechanism of the respiratory tract. One of the major factors determining MCT is the ciliary activity of the respiratory epithelium. Rhinoscintigraphy is the most commonly used method for the analysis of mucociliary activity. The aim of this study ...

  1. Smoothed analysis of partitioning algorithms for Euclidean functionals

    NARCIS (Netherlands)

    Bläser, Markus; Manthey, Bodo; Rao, B.V. Raghavendra

    2013-01-01

    Euclidean optimization problems such as TSP and minimum-length matching admit fast partitioning algorithms that compute near-optimal solutions on typical instances. In order to explain this performance, we develop a general framework for the application of smoothed analysis to partitioning

  2. Smoothed analysis of partitioning algorithms for Euclidean functionals

    NARCIS (Netherlands)

    Bläser, Markus; Manthey, Bodo; Rao, B.V. Raghavendra; Dehne, F.; Iacono, J.; Sack, J.-R.

    2011-01-01

    Euclidean optimization problems such as TSP and minimum-length matching admit fast partitioning algorithms that compute near-optimal solutions on typical instances. We develop a general framework for the application of smoothed analysis to partitioning algorithms for Euclidean optimization problems.

  3. Stochastic sensitivity analysis using HDMR and score function

    Indian Academy of Sciences (India)

    Abstract. Probabilistic sensitivities provide an important insight in reliability analysis and often crucial towards understanding the physical behaviour underlying failure and modifying the design to mitigate and manage risk. This article presents a new computational approach for calculating stochastic sensitivities of ...

  4. Rhinoscintigraphic analysis of nasal mucociliary function in patients ...

    African Journals Online (AJOL)

    Objective: Mucociliary transport (MCT) is an important defense mechanism of the respiratory tract. One of the major factors determining MCT is the ciliary activity of the respiratory epithelium. Rhinoscintigraphy is the most commonly used method for the analysis of mucociliary activity. The aim of this study was to investigate ...

  5. Function spaces and partial differential equations volume 2 : contemporary analysis

    CERN Document Server

    Taheri, Ali

    2015-01-01

    This is a book written primarily for graduate students and early researchers in the fields of Analysis and Partial Differential Equations (PDEs). Coverage of the material is essentially self-contained, extensive and novel with great attention to details and rigour.

  6. Cloning, expression and functional analysis of MAP30 from ...

    African Journals Online (AJOL)

    The apoptosis percentage and the mitochondria membrane potential level was displayed by flow cytometry analysis and JC-1 fluorescent probe assay, respectively. The mRNA expression of caspase-9 and Apaf-1 was investigated by reverse transcription polymerase chain reaction (RT-PCR). The content of Cyt C and the ...

  7. Social Signals, their function, and automatic analysis: A survey

    NARCIS (Netherlands)

    Vinciarelli, Alessandro; Pantic, Maja; Bourlard, Hervé; Pentland, Alex

    2008-01-01

    Social Signal Processing (SSP) aims at the analysis of social behaviour in both Human-Human and Human-Computer interactions. SSP revolves around automatic sensing and interpretation of social signals, complex aggregates of nonverbal behaviours through which individuals express their attitudes

  8. Genome-wide identification, functional analysis and expression ...

    African Journals Online (AJOL)

    Fuyou Fu

    2013-07-24

    Jul 24, 2013 ... RH89-039-16 referred to as RH and from a heterozygous diploid breeding line. All PDR genes expression was analyzed, using Mev. 4.8 version (Saeed et al., 2003). RESULTS. Identification of 76 potato PDR proteins by sequence analysis. Potato genome annotation files were downloaded. Then. Mapman ...

  9. Dental indications for the instrumental functional analysis in additional consideration of health-economic aspects.

    Science.gov (United States)

    Tinnemann, Peter; Stöber, Yvonne; Roll, Stephanie; Vauth, Christoph; Willich, Stefan N; Greiner, Wolfgang

    2010-04-27

    Besides clinical and radiological examination instrumental functional analyses are performed as diagnostic procedures for craniomandibular dysfunctions. Instrumental functional analyses cause substantial costs and shows a considerable variability between individual dentist practices. On the basis of published scientific evidence the validity of the instrumental functional analysis for the diagnosis of craniomandibular dysfunctions compared to clinical diagnostic procedures; the difference of the various forms of the instrumental functional analysis; the existence of a dependency on additional other factors and the need for further research are determined in this report. In addition, the cost effectiveness of the instrumental functional analysis is analysed in a health-policy context, and social, legal and ethical aspects are considered. A literature search is performed in over 27 databases and by hand. Relevant companies and institutions are contacted concerning unpublished studies. The inclusion criteria for publications are (i) diagnostic studies with the indication "craniomandibular malfunction", (ii) a comparison between clinical and instrumental functional analysis, (iii) publications since 1990, (iv) publications in English or German. The identified literature is evaluated by two scientists regarding the relevance of content and methodical quality. The systematic database search resulted in 962 hits. 187 medical and economic complete publications are evaluated. Since the evaluated studies are not relevant enough to answer the medical or health economic questions no study is included. The inconsistent terminology concerning craniomandibular dysfunctions and instrumental functional analyses results in a broad literature search in databases and an extensive search by hand. Since no relevant results concerning the validity of the instrumental functional analysis in comparison to the clinical functional analysis are found, it is impossible to make relevant

  10. Dental indications for the instrumental functional analysis in additional consideration of health-economic aspects

    Directory of Open Access Journals (Sweden)

    Willich, Stefan N.

    2010-01-01

    Full Text Available Background: Besides clinical and radiological examination instrumental functional analyses are performed as diagnostic procedures for craniomandibular dysfunctions. Instrumental functional analyses cause substantial costs and shows a considerable variability between individual dentist practices. Objectives: On the basis of published scientific evidence the validity of the instrumental functional analysis for the diagnosis of craniomandibular dysfunctions compared to clinical diagnostic procedures; the difference of the various forms of the instrumental functional analysis; the existence of a dependency on additional other factors and the need for further research are determined in this report. In addition, the cost effectiveness of the instrumental functional analysis is analysed in a health-policy context, and social, legal and ethical aspects are considered. Methods: A literature search is performed in over 27 databases and by hand. Relevant companies and institutions are contacted concerning unpublished studies. The inclusion criteria for publications are (i diagnostic studies with the indication “craniomandibular malfunction”, (ii a comparison between clinical and instrumental functional analysis, (iii publications since 1990, (iv publications in English or German. The identified literature is evaluated by two scientists regarding the relevance of content and methodical quality.Results: The systematic database search resulted in 962 hits. 187 medical and economic complete publications are evaluated. Since the evaluated studies are not relevant enough to answer the medical or health economic questions no study is included. Discussion: The inconsistent terminology concerning craniomandibular dysfunctions and instrumental functional analyses results in a broad literature search in databases and an extensive search by hand. Since no relevant results concerning the validity of the instrumental functional analysis in comparison to the clinical

  11. Components of Appreciative Functioning: A Thematic Analysis of Relevant Literature and Content Analysis of Existing Measurement Scales

    National Research Council Canada - National Science Library

    Rusk, Reuben D; Vella-Brodrick, Dianne A; Waters, Lea

    2015-01-01

    ... detail.A deductive thematic analysis of relevant literature was performed in Study 1 to identify psychological and social components of appreciative functioning within an empirically-based systems...

  12. A Goal-Function Approach to Analysis of Control Situations

    DEFF Research Database (Denmark)

    Lind, Morten

    2010-01-01

    The concept of situations plays a central role in all theories of meaning and context. and serve to frame or group events and other occurrences into coherent meaningful wholes. Situations are typed, may be interconnected and organized into higher level structures. In operation of industrial...... processes situations should identify operational aspects relevant for control agent’s decision making in plant supervision and control. Control situations can be understood as recurrent and interconnected patterns of control with important implications for control and HMI design. Goal-Function approaches...

  13. QTL Analysis and Functional Genomics of Animal Model

    DEFF Research Database (Denmark)

    Farajzadeh, Leila

    In recent years, the use of functional genomics and next-generation sequencing technologies has increased the probability of success in studies of complex properties. The integration of large data sets from association studies, DNA resequencing, gene expression profiles and phenotypic data...... variation in the form of single nucleotide polymorphisms (SNPs) to prioritise candidate genes and pathways involved in mechanisms behind complex properties such as obesity. She successfully used RNA-seq techniques in her studies of global expression profiles, as well as quantitative and qualitative aspects...

  14. A functional clustering algorithm for the analysis of neural relationships

    CERN Document Server

    Feldt, S; Hetrick, V L; Berke, J D; Zochowski, M

    2008-01-01

    We formulate a novel technique for the detection of functional clusters in neural data. In contrast to prior network clustering algorithms, our procedure progressively combines spike trains and derives the optimal clustering cutoff in a simple and intuitive manner. To demonstrate the power of this algorithm to detect changes in network dynamics and connectivity, we apply it to both simulated data and real neural data obtained from the mouse hippocampus during exploration and slow-wave sleep. We observe state-dependent clustering patterns consistent with known neurophysiological processes involved in memory consolidation.

  15. Functional analysis of Ficolin-3 mediated complement activation

    DEFF Research Database (Denmark)

    Hein, Estrid; Honoré, Christian; Skjoedt, Mikkel-Ole

    2010-01-01

    assessed by C4, C3 and terminal complement complex (TCC) deposition. Serum Ficolin-3 bound to acBSA in a calcium dependent manner, while only minimal binding of Ficolin-2 and no binding of Ficolin-1 were observed. No binding to normal BSA was seen for any of the Ficolins. Serum C4, C3 and TCC deposition...... was applied to the samples that inhibited interference from the classical pathway due to the presence of anti-BSA antibodies in some sera. We describe a novel functional method for measuring complement activation mediated by Ficolin-3 in human serum up to the formation of TCC. The assay provides...

  16. A NEW TOOL FOR IMAGE ANALYSIS BASED ON CHEBYSHEV RATIONAL FUNCTIONS: CHEF FUNCTIONS

    Energy Technology Data Exchange (ETDEWEB)

    Jimenez-Teja, Y.; Benitez, N., E-mail: yojite@iaa.es [Instituto de Astrofisica de Andalucia (CSIC), Glorieta de la Astronomia s/n, Granada E-18008 (Spain)

    2012-02-01

    We introduce a new approach to the modeling of the light distribution of galaxies, an orthonormal polar basis formed by a combination of Chebyshev rational functions and Fourier polynomials that we call CHEF functions, or CHEFs. We have developed an orthonormalization process to apply this basis to pixelized images, and implemented the method as a Python pipeline. The new basis displays remarkable flexibility, being able to accurately fit all kinds of galaxy shapes, including irregulars, spirals, ellipticals, highly compact, and highly elongated galaxies. It does this while using fewer components than similar methods, as shapelets, and without producing artifacts, due to the efficiency of the rational Chebyshev polynomials to fit quickly decaying functions like galaxy profiles. The method is linear and very stable, and therefore is capable of processing large numbers of galaxies in a fast and automated way. Due to the high quality of the fits in the central parts of the galaxies, and the efficiency of the CHEF basis modeling galaxy profiles up to very large distances, the method provides highly accurate estimates of total galaxy fluxes and ellipticities. Future papers will explore in more detail the application of the method to perform multiband photometry, morphological classification, and weak shear measurements.

  17. Using functional analysis in archival appraisal a practical and effective alternative to traditional appraisal methodologies

    CERN Document Server

    Robyns, Marcus C

    2014-01-01

    In an age of scarcity and the challenge of electronic records, can archivists and records managers continue to rely upon traditional methodology essentially unchanged since the early 1950s? Using Functional Analysis in Archival Appraisal: A Practical and Effective Alternative to Traditional Appraisal Methodologies shows how archivists in other countries are already using functional analysis, which offers a better, more effective, and imminently more practical alternative to traditional appraisal methodologies that rely upon an analysis of the records themselves.

  18. Molecular cloning and functional analysis of the gene encoding ...

    African Journals Online (AJOL)

    Here we report for the first time the cloning of a full-length cDNA encoding GGPPS (Jc-GGPPS) from Jatropha curcas L. The full-length cDNA was 1414 base pair (bp), with an 1110-bp open reading frame (ORF) encoding a 370- amino-acids polypeptide. Bioinformatic analysis revealed that Jc-GGPPS is a member of the ...

  19. Person deixis in Japanese and English - a Contrastive Functional Analysis

    OpenAIRE

    Irgens, Benedicte Mosby

    2017-01-01

    This dissertation is a contrastive analysis of person deixis in English and Japanese. Person deixis is the linguistic reference to discourse participant roles, i.e. expressions referring to the speaker, listener and to other persons, who may or may not be present in the discourse situation. Person deixis may be manifested linguistically in various ways across languages. In English, it is grammaticalized through the pronominal system and verbal agreement inflection. In Japanese, in contrast, p...

  20. Functional Analysis and Evolution Equations Dedicated to Gunter Lumer

    CERN Document Server

    Amann, Herbert; Hieber, Matthias

    2008-01-01

    GA1/4nter Lumer was an outstanding mathematician whose work has great influence on the research community in mathematical analysis and evolution equations. He was at the origin of the breath-taking development the theory of semigroups saw after the pioneering book of Hille and Phillips of 1957. This volume contains invited contributions presenting the state of the art of these topics and reflecting the broad interests of GA1/4nter Lumer.

  1. Global Particle Swarm Optimization for High Dimension Numerical Functions Analysis

    Directory of Open Access Journals (Sweden)

    J. J. Jamian

    2014-01-01

    Full Text Available The Particle Swarm Optimization (PSO Algorithm is a popular optimization method that is widely used in various applications, due to its simplicity and capability in obtaining optimal results. However, ordinary PSOs may be trapped in the local optimal point, especially in high dimensional problems. To overcome this problem, an efficient Global Particle Swarm Optimization (GPSO algorithm is proposed in this paper, based on a new updated strategy of the particle position. This is done through sharing information of particle position between the dimensions (variables at any iteration. The strategy can enhance the exploration capability of the GPSO algorithm to determine the optimum global solution and avoid traps at the local optimum. The proposed GPSO algorithm is validated on a 12-benchmark mathematical function and compared with three different types of PSO techniques. The performance of this algorithm is measured based on the solutions’ quality, convergence characteristics, and their robustness after 50 trials. The simulation results showed that the new updated strategy in GPSO assists in realizing a better optimum solution with the smallest standard deviation value compared to other techniques. It can be concluded that the proposed GPSO method is a superior technique for solving high dimensional numerical function optimization problems.

  2. Metabolomic Functional Analysis of Bacterial Genomes: Final Report

    Energy Technology Data Exchange (ETDEWEB)

    Arp, Daniel J; Sayavedra-Soto, Luis A

    2008-01-01

    The availability of the complete DNA sequence of the bacterial genome of Nitrosomonas europaea offered the opportunity for unprecedented and detailed investigations of function. We studied the function of genes involved in carbohydrate and Fe metabolism. N. europaea has genes for the synthesis and degradation of glycogen and sucrose but cannot grow on substrates other than ammonia and CO2. Granules of glycogen were detected in whole cells by electron microscopy and quantified in cell-free extracts by enzymatic methods. The cellular glycogen and sucrose content varied depending on the composition of the growth medium and cellular growth stage. N. europaea also depends heavily on iron for metabolism of ammonia, is particularly interesting since it lacks genes for siderophore production, and has genes with only low similarity to known iron reductases, yet grows relatively well in medium containing low Fe. By comparing the transcriptomes of cells grown in iron-replete medium versus iron-limited medium, 247 genes were identified as differentially expressed. Mutant strains deficient in genes for sucrose, glycogen and iron metabolism were created and are being used to further our understanding of ammonia oxidizing bacteria.

  3. Functional analysis of putative operons in Brugia malayi.

    Science.gov (United States)

    Liu, Canhui; Oliveira, Ana; Chauhan, Chitra; Ghedin, Elodie; Unnasch, Thomas R

    2010-01-01

    Operons are a common mode of gene organization in Caenorhabditis elegans. Similar gene arrangements suggest that functional operons may exist in Brugia malayi. To definitively test this hypothesis, a bicistronic reporter vector consisting of an upstream firefly luciferase gene and a downstream renilla luciferase gene was constructed. The genome was then surveyed to identify 15 gene pairs that were likely to represent operons. Two of four domains upstream of the 5' gene from these clusters exhibited promoter activity. When constructs replicating the promoter and intergenic arrangement found in the native putative operon were transfected into embryos, both firefly and renilla activities were detected, while constructs with the promoter alone or intergenic region alone produced no activity from the downstream reporter. These data confirm that functional operons exist in B. malayi. Mutation of three U-rich element homologues present in one of the operons resulted in a decrease in downstream renilla reporter activity, suggesting that these were important in mRNA maturation. Hemi-nested reverse transcriptase-PCR assays demonstrated that while the mRNA encoding the native downstream open reading frame of one operon contained an SL1 spliced leader at its 5' end, the renilla gene mRNA produced from the corresponding transgenic construct did not. Copyright 2009 Australian Society for Parasitology Inc. Published by Elsevier Ltd. All rights reserved.

  4. The Functional Analysis of Histone Acetyltransferase MOF in Tumorigenesis.

    Science.gov (United States)

    Su, Jiaming; Wang, Fei; Cai, Yong; Jin, Jingji

    2016-01-14

    Changes in chromatin structure and heritably regulating the gene expression by epigenetic mechanisms, such as histone post-translational modification, are involved in most cellular biological processes. Thus, abnormal regulation of epigenetics is implicated in the occurrence of various diseases, including cancer. Human MOF (males absent on the first) is a member of the MYST (Moz-Ybf2/Sas3-Sas2-Tip60) family of histone acetyltransferases (HATs). As a catalytic subunit, MOF can form at least two distinct multiprotein complexes (MSL and NSL) in human cells. Both complexes can acetylate histone H4 at lysine 16 (H4K16); however, the NSL complex possesses broader substrate specificity and can also acetylate histone H4 at lysines 5 and 8 (H4K5 and H4K8), suggesting the complexity of the intracellular functions of MOF. Silencing of MOF in cells leads to genomic instability, inactivation of gene transcription, defective DNA damage repair and early embryonic lethality. Unbalanced MOF expression and its corresponding acetylation of H4K16 have been found in certain primary cancer tissues, including breast cancer, medulloblastoma, ovarian cancer, renal cell carcinoma, colorectal carcinoma, gastric cancer, as well as non-small cell lung cancer. In this review, we provide a brief overview of MOF and its corresponding histone acetylation, introduce recent research findings that link MOF functions to tumorigenesis and speculate on the potential role that may be relevant to tumorigenic pathways.

  5. The Functional Analysis of Histone Acetyltransferase MOF in Tumorigenesis

    Directory of Open Access Journals (Sweden)

    Jiaming Su

    2016-01-01

    Full Text Available Changes in chromatin structure and heritably regulating the gene expression by epigenetic mechanisms, such as histone post-translational modification, are involved in most cellular biological processes. Thus, abnormal regulation of epigenetics is implicated in the occurrence of various diseases, including cancer. Human MOF (males absent on the first is a member of the MYST (Moz-Ybf2/Sas3-Sas2-Tip60 family of histone acetyltransferases (HATs. As a catalytic subunit, MOF can form at least two distinct multiprotein complexes (MSL and NSL in human cells. Both complexes can acetylate histone H4 at lysine 16 (H4K16; however, the NSL complex possesses broader substrate specificity and can also acetylate histone H4 at lysines 5 and 8 (H4K5 and H4K8, suggesting the complexity of the intracellular functions of MOF. Silencing of MOF in cells leads to genomic instability, inactivation of gene transcription, defective DNA damage repair and early embryonic lethality. Unbalanced MOF expression and its corresponding acetylation of H4K16 have been found in certain primary cancer tissues, including breast cancer, medulloblastoma, ovarian cancer, renal cell carcinoma, colorectal carcinoma, gastric cancer, as well as non-small cell lung cancer. In this review, we provide a brief overview of MOF and its corresponding histone acetylation, introduce recent research findings that link MOF functions to tumorigenesis and speculate on the potential role that may be relevant to tumorigenic pathways.

  6. Functional and mechanistic analysis of telomerase: An antitumor drug target.

    Science.gov (United States)

    Chen, Yinnan; Zhang, Yanmin

    2016-07-01

    The current research on anticancer drugs focuses on exploiting particular traits or hallmarks unique to cancer cells. Telomerase, a special reverse transcriptase, has been recognized as a common factor in most tumor cells, and in turn a distinctive characteristic with respect to non-malignant cells. This feature has made telomerase a preferred target for anticancer drug development and cancer therapy. This review aims to analyze the pharmacological function and mechanism and role of telomerase in oncogenesis; to provide fundamental knowledge for research on the structure, function, and working mechanism of telomerase; to expound the role that telomerase plays in the initiation and development of tumor and its relationship with tumor cell growth, proliferation, apoptosis, and related pathway molecules; and to display potential targets of antitumor drug for inhibiting the expression, reconstitution, and trafficking of the enzyme. We therefore summarize recent advances in potential telomerase inhibitors for antitumor including natural products, synthetic small molecules, peptides and proteins, which indicate that optimizing the delivery method and drug combination could be of help in a combinatorial drug treatment for tumor. More extensive understanding of the structure, biogenesis, and mechanism of telomerase will provide invaluable information for increasing the efficiency of rational antitumor drug design. Copyright © 2016 Elsevier Inc. All rights reserved.

  7. Exact Thermal Analysis of Functionally Graded Cylindrical and Spherical Vessels

    Directory of Open Access Journals (Sweden)

    Vebil Yıldırım

    2017-07-01

    Full Text Available Thermal analyses of radially functionally graded (FG thick-walled a spherical vessel and an infinite cylindrical vessel or a circular annulus are conducted analytically by the steady-state 1-D Fourier heat conduction theory under Dirichlet’s boundary conditions. By employing simple-power material grading pattern the differential equations are obtained in the form of Euler-Cauchy types. Analytical solution of the differential equations gives the temperature field and the heat flux distribution in the radial direction in a closed form. Three different physical metal-ceramic pairs first considered to study the effect of the aspect ratio, which is defined as the inner radius to the outer radius of the structure, on the temperature and heat flux variation along the radial coordinate. Then a parametric study is performed with hypothetic inhomogeneity indexes for varying aspect ratios.

  8. Engineering and Functional Analysis of Mitotic Kinases Through Chemical Genetics.

    Science.gov (United States)

    Jones, Mathew J K; Jallepalli, Prasad V

    2016-01-01

    During mitosis, multiple protein kinases transform the cytoskeleton and chromosomes into new and highly dynamic structures that mediate the faithful transmission of genetic information and cell division. However, the large number and strong conservation of mammalian kinases in general pose significant obstacles to interrogating them with small molecules, due to the difficulty in identifying and validating those which are truly selective. To overcome this problem, a steric complementation strategy has been developed, in which a bulky "gatekeeper" residue within the active site of the kinase of interest is replaced with a smaller amino acid, such as glycine or alanine. The enlarged catalytic pocket can then be targeted in an allele-specific manner with bulky purine analogs. This strategy provides a general framework for dissecting kinase function with high selectivity, rapid kinetics, and reversibility. In this chapter we discuss the principles and techniques needed to implement this chemical genetic approach in mammalian cells.

  9. Extensions of positive definite functions applications and their harmonic analysis

    CERN Document Server

    Jorgensen, Palle E T; Tian, Feng

    2016-01-01

    This monograph deals with the mathematics of extending given partial data-sets obtained from experiments; Experimentalists frequently gather spectral data when the observed data is limited, e.g., by the precision of instruments; or by other limiting external factors. Here the limited information is a restriction, and the extensions take the form of full positive definite function on some prescribed group. It is therefore both an art and a science to produce solid conclusions from restricted or limited data. While the theory of is important in many areas of pure and applied mathematics, it is difficult for students and for the novice to the field, to find accessible presentations which cover all relevant points of view, as well as stressing common ideas and interconnections. We have aimed at filling this gap, and we have stressed hands-on-examples.

  10. Free Vibration Analysis of Multiple Cracked Functionally Graded Timoshenko Beams

    Directory of Open Access Journals (Sweden)

    Tran Van Lien

    Full Text Available Abstract In this paper, authors present the study of free vibration of bending multiple cracked functionally graded material (FGM beam. Vibration equations of multiple cracked FGM beam were established by using the rotational spring model of cracks, dynamic stiffness method (DSM and actual position of neutral plane. The frequency equation obtained was in a simple form, that provides an effective approach to study not only free vibration of the beams but also inverse problems like identification of material and crack parameters in structure. The obtained numerical results show good agreement with other previous published results. Thence, numerical computation has been carried out to investigate the effect of each crack, the number of cracks, material and geometric parameters on the natural frequencies of multiple cracked Timoshenko FGM beams.

  11. Functional analysis of candidate ABC transporter proteins for sitosterol transport

    DEFF Research Database (Denmark)

    Albrecht, C; Elliott, J I; Sardini, A

    2002-01-01

    Two ATP-binding cassette (ABC) proteins, ABCG5 and ABCG8, have recently been associated with the accumulation of dietary cholesterol in the sterol storage disease sitosterolemia. These two 'half-transporters' are assumed to dimerize to form the complete sitosterol transporter which reduces...... the absorption of sitosterol and related molecules in the intestine by pumping them back into the lumen. Although mutations altering ABCG5 and ABCG8 are found in affected patients, no functional demonstration of sitosterol transport has been achieved. In this study, we investigated whether other ABC transporters......-specific ABC transporters have acquired specificity to exclude sitosterol and related sterols like cholesterol presumably because the abundance of cholesterol in the membrane would interfere with their action; in consequence, specific transporters have evolved to handle these sterols....

  12. ANALYSIS OF THE DEMOGRAPHIC POTENTIAL IN FUNCTION OF TOURISM

    Directory of Open Access Journals (Sweden)

    Mijalce Gjorgievski

    2011-06-01

    Full Text Available Man is the prime mover of the overall social economic and political life of the entire globe and therefore he is studied from various aspects depending on the needs of what we want to obtain information on the demographic potential and its features.In this paper, the subject of study will be processing potential through its demographic characteristics (number condition, age structure, natural increase, economic activity, religious composition, etc. for the tourism economy. We know that the basic elements of tourism are the natural and cultural wealth that detect, evaluate and put into operation in tourism. However, it has its function, the basic factor are the people who need to visit those places, so it is very important to understand the demographic characteristics of people in every region of the globe in order to come to some understanding of the habits, needs and affinities of people depending on age, nationality and religious affiliation, etc. when choosing their travel destination.

  13. Periodic Density Functional Theory Solver using Multiresolution Analysis with MADNESS

    Science.gov (United States)

    Harrison, Robert; Thornton, William

    2011-03-01

    We describe the first implementation of the all-electron Kohn-Sham density functional periodic solver (DFT) using multi-wavelets and fast integral equations using MADNESS (multiresolution adaptive numerical environment for scientific simulation; http://code.google.com/p/m-a-d-n-e-s-s). The multiresolution nature of a multi-wavelet basis allows for fast computation with guaranteed precision. By reformulating the Kohn-Sham eigenvalue equation into the Lippmann-Schwinger equation, we can avoid using the derivative operator which allows better control of overall precision for the all-electron problem. Other highlights include the development of periodic integral operators with low-rank separation, an adaptable model potential for nuclear potential, and an implementation for Hartree Fock exchange. This work was supported by NSF project OCI-0904972 and made use of resources at the Center for Computational Sciences at Oak Ridge National Laboratory under contract DE-AC05-00OR22725.

  14. Density Functional Theory using Multiresolution Analysis with MADNESS

    Science.gov (United States)

    Thornton, Scott; Harrison, Robert

    2012-02-01

    We describe the first implementation of the all-electron Kohn-Sham density functional periodic solver (DFT) using multi-wavelets and fast integral equations using MADNESS (multiresolution adaptive numerical environment for scientific simulation; http://code.google.com/p/m-a-d-n-e-s-s). The multiresolution nature of a multi-wavelet basis allows for fast computation with guaranteed precision. By reformulating the Kohn-Sham eigenvalue equation into the Lippmann-Schwinger equation, we can avoid using the derivative operator which allows better control of overall precision for the all-electron problem. Other highlights include the development of periodic integral operators with low-rank separation, an adaptable model potential for the nuclear potential, and an implementation for Hartree-Fock exchange.

  15. Functional analysis of a putative Dothistromin toxin MFS transporter gene.

    Science.gov (United States)

    Bradshaw, Rosie E; Feng, Zhilun; Schwelm, Arne; Yang, Yongzhi; Zhang, Shuguang

    2009-12-01

    Dothistromin is a non-host selective toxin produced by the pine needle pathogen Dothistroma septosporum. Dothistromin is not required for pathogenicity, but may have a role in competition and niche protection. To determine how D. septosporum tolerates its own toxin, a putative dothistromin transporter, dotC, was investigated. Studies with mutants lacking a functional dotC gene, overproducing dotC, or with a dotC-GFP fusion gene, did not provide conclusive evidence of a role in dothistromin efflux. The mutants revealed a major effect of dotC on dothistromin biosynthesis but were resistant to exogenous dothistromin. Intracellular localization studies suggest that compartmentalization may be important for dothistromin tolerance.

  16. Functional Analysis of the Lactobacillus casei BL23 Sortases

    Science.gov (United States)

    Muñoz-Provencio, Diego; Rodríguez-Díaz, Jesús; Collado, María Carmen; Langella, Philippe; Bermúdez-Humarán, Luis G.

    2012-01-01

    Sortases are a class of enzymes that anchor surface proteins to the cell wall of Gram-positive bacteria. Lactobacillus casei BL23 harbors four sortase genes, two belonging to class A (srtA1 and srtA2) and two belonging to class C (srtC1 and srtC2). Class C sortases were clustered with genes encoding their putative substrates that were homologous to the SpaEFG and SpaCBA proteins that encode mucus adhesive pili in Lactobacillus rhamnosus GG. Twenty-three genes encoding putative sortase substrates were identified in the L. casei BL23 genome with unknown (35%), enzymatic (30%), or adhesion-related (35%) functions. Strains disrupted in srtA1, srtA2, srtC1, and srtC2 and an srtA1 srtA2 double mutant were constructed. The transcription of all four sortase encoding genes was detected, but only the mutation of srtA1 resulted in a decrease in bacterial surface hydrophobicity. The β-N-acetyl-glucosaminidase and cell wall proteinase activities of whole cells diminished in the srtA1 mutant and, to a greater extent, in the srtA1 srtA2 double mutant. Cell wall anchoring of the staphylococcal NucA reporter protein fused to a cell wall sorting sequence was also affected in the srtA mutants, and the percentages of adhesion to Caco-2 and HT-29 intestinal epithelial cells were reduced for the srtA1 srtA2 strain. Mutations in srtC1 or srtC2 result in an undetectable phenotype. Together, these results suggest that SrtA1 is the housekeeping sortase in L. casei BL23 and SrtA2 would carry out redundant or complementary functions that become evident when SrtA1 activity is absent. PMID:23042174

  17. Direct analysis of thymic function in children with Down's syndrome

    Directory of Open Access Journals (Sweden)

    Meschiari Liviana

    2005-02-01

    Full Text Available Abstract Background Down's syndrome (DS is characterized by several immunological defects, especially regarding T cell compartment. DS is considered the best example of accelerated ageing in humans. Direct observations of the thymus have shown that in DS this organ undergoes severe histological and morphological changes. However, no data on its capacity to generate T cells are present in the literature. Here, using a new technology based upon real time PCR, we have investigated the capacity of the thymus to produce and release newly generated T lymphocytes (the so called "recent thymic emigrants", RTE in children with DS. Methods We studied 8 children affected by DS, aged 2–7 years, compared with 8 age- and sex-matched healthy controls. Flow cytometry was used to determine different lymphocytes subsets. Real time PCR with the Taqman system was used to quantify the amount of RTE, i.e. peripheral blood lymphocytes that express the T cell receptor rearrangement excision circles (TREC. Results In comparison with control children, those with DS had a significant lower number of TREC+ peripheral blood cells. Moreover, in DS children but not in controls, a strong negative correlation between age and the levels of TREC+ cells was found. Conclusions The direct measure of thymic output indicates that the impairment of the organ results in a reduced production of newly generated T cells. This observation could suggest that cytokines able to modulate thymic function, such as interleukins, could be useful to improve the functionality of the organ and to treat the immunodeficiency present in DS subjects.

  18. Genetic analysis of Runx2 function during intramembranous ossification.

    Science.gov (United States)

    Takarada, Takeshi; Nakazato, Ryota; Tsuchikane, Azusa; Fujikawa, Koichi; Iezaki, Takashi; Yoneda, Yukio; Hinoi, Eiichi

    2016-01-15

    Runt-related transcription factor 2 (Runx2) is an essential transcriptional regulator of osteoblast differentiation and its haploinsufficiency leads to cleidocranial dysplasia because of a defect in osteoblast differentiation during bone formation through intramembranous ossification. The cellular origin and essential period for Runx2 function during osteoblast differentiation in intramembranous ossification remain poorly understood. Paired related homeobox 1 (Prx1) is expressed in craniofacial mesenchyme, and Runx2 deficiency in cells of the Prx1 lineage (in mice referred to here as Runx2prx1 (-/-)) resulted in defective intramembranous ossification. Runx2 was heterogeneously expressed in Prx1-GFP(+) cells located at the intrasutural mesenchyme in the calvaria of transgenic mice expressing GFP under the control of the Prx1 promoter. Double-positive cells for Prx1-GFP and stem cell antigen-1 (Sca1) (Prx1(+)Sca1(+) cells) in the calvaria expressed Runx2 at lower levels and were more homogeneous and primitive than Prx1(+)Sca1(-) cells. Osterix (Osx) is another transcriptional determinant of osteoblast lineages expressed by osteoblast precursors; Osx is highly expressed by Prx1(-)Runx2(+) cells at the osteogenic front and on the surface of mineralized bone in the calvaria. Runx2 deficiency in cells of the Osx lineage (in mice referred to here as Runx2osx (-/-)) resulted in severe defects in intramembranous ossification. These findings indicate that the essential period of Runx2 function in intramembranous ossification begins at the Prx1(+)Sca1(+) mesenchymal stem cell stage and ends at the Osx(+)Prx1(-)Sca1(-) osteoblast precursor stage. © 2016. Published by The Company of Biologists Ltd.

  19. Visual analysis of music in function of music video

    Directory of Open Access Journals (Sweden)

    Antal Silard

    2015-01-01

    Full Text Available Wide-spread all over the planet, incorporating all music genres, the music video, the subject matter of this analysis, has become irreplaceable in promotions, song presentations, an artist's image, visual aesthetics of subculture; today, most of the countries in the world have a channel devoted to music only, i.e. to music video. The form started to develop rapidly in the 50s of the twentieth century, alongside television. As it developed, its purpose has changed: from a simple presentation of musicians to an independent video form.

  20. Identification of hidden failures in process control systems through function-oriented system analysis

    Energy Technology Data Exchange (ETDEWEB)

    Jalashgar, A.

    1997-05-01

    The main subject of this thesis is to identify hidden failures in process control systems by developing and using a function-oriented system analysis method. Qualitative failure analysis and the characteristics of the classical failure analysis methods and function-oriented modelling methods are covered. The general limitations of the methods in connection with the identification and representation of hidden failures are discussed. The discussion has led to the justification of developing and using a function-oriented system analysis method to identify and represent the capabilities of the system components, which realize different sets of functions in connection with different sets of goals that the system must achieve. A terminology is introduced to define the basic aspects of technical systems including goals, functions, capabilities and physical structure. A function-oriented system analysis method using this terminology and a tailored combination of the two function-oriented modelling approaches, is also introduced. It is then explained how the method can be applied in the identification and representation of hidden failures. The building blocks of a knowledge-oriented system to perform the diagnosis on the basis of the developed method are equally described. A prototype of the knowledge-based system is developed to demonstrate the applicability of the function-oriented system analysis method and the knowledge-based system. The prototype is implemented within the object-oriented software environment G2. (au) 65 ills., 32 refs.

  1. Molar Functional Relations and Clinical Behavior Analysis: Implications for Assessment and Treatment

    Science.gov (United States)

    Waltz, Thomas J.; Follette, William C.

    2009-01-01

    The experimental analysis of behavior has identified several molar functional relations that are highly relevant to clinical behavior analysis. These include matching, discounting, momentum, and variability. Matching provides a broader analysis of how multiple sources of reinforcement influence how individuals choose to allocate their time and…

  2. Comments on Functional Analysis Procedures for School-Based Behavior Problems.

    Science.gov (United States)

    Repp, Alan

    1994-01-01

    This article reviews the development of functional analysis in understanding behavior problems like self-injury and aggression and, more recently, school-based problems. Seen as particularly promising is current work on the analysis of setting events and analysis of dependent variables by considering the effects of intervention on response…

  3. Spectral analysis, vibrational assignments, NBO analysis, NMR, UV-Vis, hyperpolarizability analysis of 2-aminofluorene by density functional theory.

    Science.gov (United States)

    Jone Pradeepa, S; Sundaraganesan, N

    2014-05-05

    In this present investigation, the collective experimental and theoretical study on molecular structure, vibrational analysis and NBO analysis has been reported for 2-aminofluorene. FT-IR spectrum was recorded in the range 4000-400 cm(-1). FT-Raman spectrum was recorded in the range 4000-50 cm(-1). The molecular geometry, vibrational spectra, and natural bond orbital analysis (NBO) were calculated for 2-aminofluorene using Density Functional Theory (DFT) based on B3LYP/6-31G(d,p) model chemistry. (13)C and (1)H NMR chemical shifts of 2-aminofluorene were calculated using GIAO method. The computed vibrational and NMR spectra were compared with the experimental results. The total energy distribution (TED) was derived to deepen the understanding of different modes of vibrations contributed by respective wavenumber. The experimental UV-Vis spectra was recorded in the region of 400-200 nm and correlated with simulated spectra by suitably solvated B3LYP/6-31G(d,p) model. The HOMO-LUMO energies were measured with time dependent DFT approach. The nonlinearity of the title compound was confirmed by hyperpolarizabilty examination. Using theoretical calculation Molecular Electrostatic Potential (MEP) was investigated. Copyright © 2014 Elsevier B.V. All rights reserved.

  4. [Analysis of trace elements in limestone for archeological functions

    Energy Technology Data Exchange (ETDEWEB)

    Blanc, A. [Lab. de Recherche des Monuments Historiques, Champs-sur-Marne (France); Holmes, L.; Harbottle, G. [Brookhaven National Lab., Upton, NY (US). Chemistry Dept.

    1998-12-31

    Numerous quarries in the Lutetian limestone formations of the Paris Basin provided stone for the building and the decoration of monuments from antiquity to the present. To determine the origin of stone used for masonry and sculptures in these monuments, a team of geologists and archaeologists has investigated 300 quarries and collected 2,300 samples. Petrographic and paleontologic examination of thin sections allows geologists to distinguish Lutetian limestones from Jurassic and Cretaceous limestones. Geologists also seek to formulate hypotheses regarding the origin of Lutetian limestones used for building and sculpture in the Paris region. In the search for the sources of building and sculptural stone, the analytical methods of geologists are limited because often several quarries produce the same lithofacies. A new tool is now available, however, to attack questions of provenance raised by art historians. Because limestones from different sources have distinctive patterns of trace-element concentrations, compositional analysis by neutron activation allows one to compare building or sculptural stone from one monument with stone from quarries or other monuments. This analytical method subjects a powdered limestone sample to standard neutron activation analysis procedures at Brookhaven National Laboratory. With the help of computer programs, the compositional fingerprints of Lutetian limestones can be determined and stored in a database. The limestone database contains data for approximately 2,100 samples from monuments, sculptures and quarries. It is particularly rich in samples from the Paris Basin.

  5. Cohesive properties of noble metals by van der Waals-corrected Density Functional Theory

    CERN Document Server

    Ambrosetti, Alberto

    2016-01-01

    The cohesive energy, equilibrium lattice constant, and bulk modulus of noble metals are computed by different van der Waals-corrected Density Functional Theory methods, including vdW-DF, vdW-DF2, vdW-DF-cx, rVV10 and PBE-D. Two specifically-designed methods are also developed in order to effectively include dynamical screening effects: the DFT/vdW-WF2p method, based on the generation of Maximally Localized Wannier Functions, and the RPAp scheme (in two variants), based on a single-oscillator model of the localized electron response. Comparison with results obtained without explicit inclusion of van der Waals effects, such as with the LDA, PBE, PBEsol, or the hybrid PBE0 functional, elucidates the importance of a suitable description of screened van der Waals interactions even in the case of strong metal bonding. Many-body effects are also quantitatively evaluated within the RPAp approach.

  6. QCD Analysis of Diffractive and Leading-Proton DIS Structure Functions in the Framework of Fracture Functions

    CERN Document Server

    de Florian, D.

    1998-01-01

    We present a combined QCD analysis of recent data produced by the H1 and ZEUS collaborations on the diffractive and leading-proton deep inelastic positron--proton scattering structure functions, $F_2^{D(3)}$ and $F_2^{LP(3)}$, respectively. It is shown that the QCD framework for semi-inclusive processes, based on fracture functions, allows a unified treatment of both diffractive and leading-proton processes, and offers a precise perturbative QCD description for them, alternative to those that rely on model-dependent assumptions, such as Regge factorization, or other non-perturbative approaches

  7. Mutual connectivity analysis (MCA) using generalized radial basis function neural networks for nonlinear functional connectivity network recovery in resting-state functional MRI

    Science.gov (United States)

    D'Souza, Adora M.; Abidin, Anas Zainul; Nagarajan, Mahesh B.; Wismüller, Axel

    2016-03-01

    We investigate the applicability of a computational framework, called mutual connectivity analysis (MCA), for directed functional connectivity analysis in both synthetic and resting-state functional MRI data. This framework comprises of first evaluating non-linear cross-predictability between every pair of time series prior to recovering the underlying network structure using community detection algorithms. We obtain the non-linear cross-prediction score between time series using Generalized Radial Basis Functions (GRBF) neural networks. These cross-prediction scores characterize the underlying functionally connected networks within the resting brain, which can be extracted using non-metric clustering approaches, such as the Louvain method. We first test our approach on synthetic models with known directional influence and network structure. Our method is able to capture the directional relationships between time series (with an area under the ROC curve = 0.92 +/- 0.037) as well as the underlying network structure (Rand index = 0.87 +/- 0.063) with high accuracy. Furthermore, we test this method for network recovery on resting-state fMRI data, where results are compared to the motor cortex network recovered from a motor stimulation sequence, resulting in a strong agreement between the two (Dice coefficient = 0.45). We conclude that our MCA approach is effective in analyzing non-linear directed functional connectivity and in revealing underlying functional network structure in complex systems.

  8. Analysis of Advanced Thermoelectric Materials and Their Functional Limits

    Science.gov (United States)

    Kim, Hyun Jung

    2015-01-01

    The world's demand for energy is increasing dramatically, but the best energy conversion systems operate at approximately 30% efficiency. One way to decrease energy loss is in the recovery of waste heat using thermoelectric (TE) generators. A TE generator is device that generates electricity by exploiting heat flow across a thermal gradient. The efficiency of a TE material for power generation and cooling is determined by the dimensionless Figure of Merit (ZT): ZT = S(exp. 2)sigmaT/?: where S is the Seebeck coefficient, sigma is the electrical conductivity, T is the absolute temperature, and ? is the thermal conductivity. The parameters are not physically independent, but intrinsically coupled since they are a function of the transport properties of electrons. Traditional research on TE materials has focused on synthesizing bulk semiconductor-type materials that have low thermal conductivity and high electrical conductivity affording ZT values of 1. The optimization of the s/? ratio is difficult to achieve using current material formats, as these material constants are complementary. Recent areas of research are focusing on using nanostructural artifacts that introduce specific dislocations and boundary conditions that scatter the phonons. This disrupts the physical link between thermal (phonon) and electrical (electron) transport. The result is that ? is decreased without decreasing s. These material formats give ZT values of up to 2 which represent approximately 18% energy gain from waste heat recovery. The next challenge in developing the next generation of TE materials with superior performance is to tailor the interconnected thermoelectric physical parameters of the material system. In order to approach this problem, the fundamental physics of each parameter S, sigma, and ? need to be physically understood in their context of electron/phonon interaction for the construction of new high ZT thermoelectric devices. Is it possible to overcome the physical limit

  9. Thermodynamic analysis of solar assisted multi-functional trigeneration system

    Directory of Open Access Journals (Sweden)

    Önder KIZILKAN

    2016-02-01

    Full Text Available In this study, modelling and thermodynamic analysis of solar assisted trigeneration system was carried out. The required thermal energy for gas and vapor cycles were supplied from solar tower which is a new concept for gas cycle applications. Additionally, an absorption refrigeration cycle, vapor production process, drying process and water heating process were integrated to the system. Energy and exergy efficiencies of the trigeneration system were determined by the application of first and second law analyses. The results showed that the gas cycle efficiency was found to be 31%, vapor cycle efficiency was found to be 28% and coefficient of performance (COP values of the refrigeration system was found to be 0.77. Also the highest exergy destruction rate was found to be 4154 kW in solar tower.Keywords: Solar tower, Trigeneration, Gas cycle, Vapor cycle, Energy, Exergy

  10. Comparative and functional analysis of cardiovascular-related genes

    Energy Technology Data Exchange (ETDEWEB)

    Cheng, Jan-Fang; Pennacchio, Len A.

    2003-09-01

    The ability to detect putative cis-regulatory elements in cardiovascular-related genes has been accelerated by the availability of genomic sequence data from numerous vertebrate species and the recent development of comparative genomic tools. This improvement is anticipated to lead to a better understanding of the complex regulatory architecture of cardiovascular (CV) genes and how genetic variants in these non-coding regions can potentially play a role in cardiovascular disease. This manuscript reviews a recently established database dedicated to the comparative sequence analysis of 250 human CV genes of known importance, 37 of which currently contain sequence comparison data for organisms beyond those of human, mouse and rat. These data have provided a glimpse into the variety of possible insights from deep vertebrate sequence comparisons and the identification of putative gene regulatory elements.

  11. Analysis of microRNA expression and function.

    Science.gov (United States)

    Van Wynsberghe, Priscilla M; Chan, Shih-Peng; Slack, Frank J; Pasquinelli, Amy E

    2011-01-01

    Originally discovered in C. elegans, microRNAs (miRNAs) are small RNAs that regulate fundamental cellular processes in diverse organisms. MiRNAs are encoded within the genome and are initially transcribed as primary transcripts that can be several kilobases in length. Primary transcripts are successively cleaved by two RNase III enzymes, Drosha in the nucleus and Dicer in the cytoplasm, to produce ∼70 nucleotide (nt) long precursor miRNAs and 22 nt long mature miRNAs, respectively. Mature miRNAs regulate gene expression post-transcriptionally by imperfectly binding target mRNAs in association with the multiprotein RNA induced silencing complex (RISC). The conserved sequence, expression pattern, and function of some miRNAs across distinct species as well as the importance of specific miRNAs in many biological pathways have led to an explosion in the study of miRNA biogenesis, miRNA target identification, and miRNA target regulation. Many advances in our understanding of miRNA biology have come from studies in the powerful model organism C. elegans. This chapter reviews the current methods used in C. elegans to study miRNA biogenesis, small RNA populations, miRNA-protein complexes, and miRNA target regulation. Copyright © 2011 Elsevier Inc. All rights reserved.

  12. Functional analysis of the MAPK pathways in fungi.

    Science.gov (United States)

    Martínez-Soto, Domingo; Ruiz-Herrera, José

    The Mitogen-Activated Protein Kinase (MAPK) signaling pathways constitute one of the most important and evolutionarily conserved mechanisms for the perception of extracellular information in all the eukaryotic organisms. The MAPK pathways are involved in the transfer to the cell of the information perceived from extracellular stimuli, with the final outcome of activation of different transcription factors that regulate gene expression in response to them. In all species of fungi, the MAPK pathways have important roles in their physiology and development; e.g. cell cycle control, mating, morphogenesis, response to different stresses, resistance to UV radiation and to temperature changes, cell wall assembly and integrity, degradation of cellular organelles, virulence, cell-cell signaling, fungus-plant interaction, and response to damage-associated molecular patterns (DAMPs). Considering the importance of the phylogenetically conserved MAPK pathways in fungi, an updated review of the knowledge on them is discussed in this article. This information reveals their importance, their distribution in fungal species evolutionarily distant and with different lifestyles, their organization and function, and the interactions occurring between different MAPK pathways, and with other signaling pathways, for the regulation of the most complex cellular processes. Copyright © 2017 Asociación Española de Micología. Publicado por Elsevier España, S.L.U. All rights reserved.

  13. Itopride therapy for functional dyspepsia: a meta-analysis.

    Science.gov (United States)

    Huang, Xuan; Lv, Bin; Zhang, Shuo; Fan, Yi-Hong; Meng, Li-Na

    2012-12-28

    To evaluate the therapeutic effects of itopride vs other drugs (placebo, domperidone, mosapride) for functional dyspepsia (FD). Randomized controlled trials (RCTs) of itopride for FD were retrieved from databases. Relevant information was extracted and analyzed, using the relative risk (RR) and weighted mean deviation, as appropriate. A random or fixed effect model was used, based on the heterogeneity of the included articles, and visual inspection of funnel plots was used to evaluate publication bias. Nine RCTs enrolling 2620 FD cases were included; 1372 cases received itopride treatment and 1248 cases received placebo or other drugs (control groups). Compared with control groups, itopride had superior RR values of 1.11 [95%CI: (1.03, 1.19), P = 0.006], 1.21 [95%CI: (1.03, 1.44), P = 0.02], and 1.24 [95%CI: (1.01, 1.53), P = 0.04] for global patient assessment, postprandial fullness, and early satiety, respectively. For the Leeds Dyspepsia Questionnaire score, the weighted mean deviation was -1.38 [95%CI: (-1.75, -1.01), P itopride and control groups. The funnel plots for all indicators showed no evidence of publication bias. Itopride has good efficacy in terms of global patients assessment, postprandial fullness, and early satiety in the treatment of patients with FD and shows a low rate of adverse reactions. Itopride can greatly improve FD syndromes-score.

  14. Functional Analysis of Glycosylation of Zika Virus Envelope Protein.

    Science.gov (United States)

    Fontes-Garfias, Camila R; Shan, Chao; Luo, Huanle; Muruato, Antonio E; Medeiros, Daniele B A; Mays, Elizabeth; Xie, Xuping; Zou, Jing; Roundy, Christopher M; Wakamiya, Maki; Rossi, Shannan L; Wang, Tian; Weaver, Scott C; Shi, Pei-Yong

    2017-10-31

    Zika virus (ZIKV) infection causes devastating congenital abnormities and Guillain-Barré syndrome. The ZIKV envelope (E) protein is responsible for viral entry and represents a major determinant for viral pathogenesis. Like other flaviviruses, the ZIKV E protein is glycosylated at amino acid N154. To study the function of E glycosylation, we generated a recombinant N154Q ZIKV that lacks the E glycosylation and analyzed the mutant virus in mammalian and mosquito hosts. In mouse models, the mutant was attenuated, as evidenced by lower viremia, decreased weight loss, and no mortality; however, knockout of E glycosylation did not significantly affect neurovirulence. Mice immunized with the mutant virus developed a robust neutralizing antibody response and were completely protected from wild-type ZIKV challenge. In mosquitoes, the mutant virus exhibited diminished oral infectivity for the Aedes aegypti vector. Collectively, the results demonstrate that E glycosylation is critical for ZIKV infection of mammalian and mosquito hosts. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

  15. Functional Analysis of Glycosylation of Zika Virus Envelope Protein

    Directory of Open Access Journals (Sweden)

    Camila R. Fontes-Garfias

    2017-10-01

    Full Text Available Summary: Zika virus (ZIKV infection causes devastating congenital abnormities and Guillain-Barré syndrome. The ZIKV envelope (E protein is responsible for viral entry and represents a major determinant for viral pathogenesis. Like other flaviviruses, the ZIKV E protein is glycosylated at amino acid N154. To study the function of E glycosylation, we generated a recombinant N154Q ZIKV that lacks the E glycosylation and analyzed the mutant virus in mammalian and mosquito hosts. In mouse models, the mutant was attenuated, as evidenced by lower viremia, decreased weight loss, and no mortality; however, knockout of E glycosylation did not significantly affect neurovirulence. Mice immunized with the mutant virus developed a robust neutralizing antibody response and were completely protected from wild-type ZIKV challenge. In mosquitoes, the mutant virus exhibited diminished oral infectivity for the Aedes aegypti vector. Collectively, the results demonstrate that E glycosylation is critical for ZIKV infection of mammalian and mosquito hosts. : Zika virus (ZIKV causes devastating congenital abnormities and Guillain-Barré syndrome. Fontes-Garfias et al. showed that the glycosylation of ZIKV envelope protein plays an important role in infecting mosquito vectors and pathogenesis in mouse. Keywords: Zika virus, glycosylation, flavivirus entry, mosquito transmission, vaccine

  16. Analysis of the Functionality of Refillable Propellant Management Devices (PMD)

    Science.gov (United States)

    Winkelmann, Yvonne; Gaulke, Diana; Dreyer, Michael E.

    In order to restart a stage of a spacecraft it is necessary to position the liquid stable over the tank outlet. The gas-or vapor-free provision of the thrusters for the main engine start-up can be accomplished by the use of propellant management devices (PMDs). A propellant refillable reservoir (PRR) will supply the engine with the required amount of liquid propellant until the liquid outside the PRR has settled at the bottom of the tank. Hence, the reservoir will be refilled and the main engine can be restarted. This technique has been applied in case of storable propellants yet, e.g. in satellites or ATVs. For the application in a cryogenic upper stage demonstration and validation tests are still necessary. Ground experiments to simulate propulsed phases are evaluated. To demonstrate the functionality under propulsed conditions first filling, draining and draining with a constant fill level of the tank (refilling) are analyzed. Different inflows with respect to filling and varied outflow rates for the draining tests are investigated. Pressure losses in the LOX-PMD are measured during draining and compared to a previously accomplished estimation with an one-dimensional streamtube theory.

  17. Analysis of Functional Data with Focus on Multinomial Regression and Multilevel Data

    DEFF Research Database (Denmark)

    Mousavi, Seyed Nourollah

    Functional data analysis (FDA) is a fast growing area in statistical research with increasingly diverse range of application from economics, medicine, agriculture, chemometrics, etc. Functional regression is an area of FDA which has received the most attention both in aspects of application...... and methodological development. Our main Functional data analysis (FDA) is a fast growing area in statistical research with increasingly diverse range of application from economics, medicine, agriculture, chemometrics, etc. Functional regression is an area of FDA which has received the most attention both in aspects...

  18. Abdominal functional electrical stimulation to improve respiratory function after spinal cord injury: a systematic review and meta-analysis.

    Science.gov (United States)

    McCaughey, E J; Borotkanics, R J; Gollee, H; Folz, R J; McLachlan, A J

    2016-09-01

    Abdominal functional electrical stimulation (abdominal FES) is the application of a train of electrical pulses to the abdominal muscles, causing them to contract. Abdominal FES has been used as a neuroprosthesis to acutely augment respiratory function and as a rehabilitation tool to achieve a chronic increase in respiratory function after abdominal FES training, primarily focusing on patients with spinal cord injury (SCI). This study aimed to review the evidence surrounding the use of abdominal FES to improve respiratory function in both an acute and chronic manner after SCI. A systematic search was performed on PubMed, with studies included if they applied abdominal FES to improve respiratory function in patients with SCI. Fourteen studies met the inclusion criteria (10 acute and 4 chronic). Low participant numbers and heterogeneity across studies reduced the power of the meta-analysis. Despite this, abdominal FES was found to cause a significant acute improvement in cough peak flow, whereas forced exhaled volume in 1 s approached significance. A significant chronic increase in unassisted vital capacity, forced vital capacity and peak expiratory flow was found after abdominal FES training compared with baseline. This systematic review suggests that abdominal FES is an effective technique for improving respiratory function in both an acute and chronic manner after SCI. However, further randomised controlled trials, with larger participant numbers and standardised protocols, are needed to fully establish the clinical efficacy of this technique.

  19. Theoretical foundations of functional data analysis, with an introduction to linear operators

    CERN Document Server

    Hsing, Tailen

    2015-01-01

    Theoretical Foundations of Functional Data Analysis, with an Introduction to Linear Operators provides a uniquely broad compendium of the key mathematical concepts and results that are relevant for the theoretical development of functional data analysis (FDA).The self-contained treatment of selected topics of functional analysis and operator theory includes reproducing kernel Hilbert spaces, singular value decomposition of compact operators on Hilbert spaces and perturbation theory for both self-adjoint and non self-adjoint operators. The probabilistic foundation for FDA is described from the

  20. Control-flow analysis of function calls and returns by abstract interpretation

    DEFF Research Database (Denmark)

    Midtgaard, Jan; Jensen, Thomas P.

    2009-01-01

    We derive a control-flow analysis that approximates the interprocedural control-flow of both function calls and returns in the presence of first-class functions and tail-call optimization. In addition to an abstract environment, our analysis computes for each expression an abstract control stack......, effectively approximating where function calls return across optimized tail calls. The analysis is systematically calculated by abstract interpretation of the stack-based CaEK abstract machine of Flanagan et al. using a series of Galois connections. Abstract interpretation provides a unifying setting in which...

  1. Functional Analysis of Corn Husk Photosynthesis[W][OA

    Science.gov (United States)

    Pengelly, Jasper J.L.; Kwasny, Scott; Bala, Soumi; Evans, John R.; Voznesenskaya, Elena V.; Koteyeva, Nuria K.; Edwards, Gerald E.; Furbank, Robert T.; von Caemmerer, Susanne

    2011-01-01

    The husk surrounding the ear of corn/maize (Zea mays) has widely spaced veins with a number of interveinal mesophyll (M) cells and has been described as operating a partial C3 photosynthetic pathway, in contrast to its leaves, which use the C4 photosynthetic pathway. Here, we characterized photosynthesis in maize husk and leaf by measuring combined gas exchange and carbon isotope discrimination, the oxygen dependence of the CO2 compensation point, and photosynthetic enzyme activity and localization together with anatomy. The CO2 assimilation rate in the husk was less than that in the leaves and did not saturate at high CO2, indicating CO2 diffusion limitations. However, maximal photosynthetic rates were similar between the leaf and husk when expressed on a chlorophyll basis. The CO2 compensation points of the husk were high compared with the leaf but did not vary with oxygen concentration. This and the low carbon isotope discrimination measured concurrently with gas exchange in the husk and leaf suggested C4-like photosynthesis in the husk. However, both Rubisco activity and the ratio of phosphoenolpyruvate carboxylase to Rubisco activity were reduced in the husk. Immunolocalization studies showed that phosphoenolpyruvate carboxylase is specifically localized in the layer of M cells surrounding the bundle sheath cells, while Rubisco and glycine decarboxylase were enriched in bundle sheath cells but also present in M cells. We conclude that maize husk operates C4 photosynthesis dispersed around the widely spaced veins (analogous to leaves) in a diffusion-limited manner due to low M surface area exposed to intercellular air space, with the functional role of Rubisco and glycine decarboxylase in distant M yet to be explained. PMID:21511990

  2. Functional analysis of sirtuin genes in multiple Plasmodium falciparum strains.

    Directory of Open Access Journals (Sweden)

    Catherine J Merrick

    Full Text Available Plasmodium falciparum, the causative agent of severe human malaria, employs antigenic variation to avoid host immunity. Antigenic variation is achieved by transcriptional switching amongst polymorphic var genes, enforced by epigenetic modification of chromatin. The histone-modifying 'sirtuin' enzymes PfSir2a and PfSir2b have been implicated in this process. Disparate patterns of var expression have been reported in patient isolates as well as in cultured strains. We examined var expression in three commonly used laboratory strains (3D7, NF54 and FCR-3 in parallel. NF54 parasites express significantly lower levels of var genes compared to 3D7, despite the fact that 3D7 was originally a clone of the NF54 strain. To investigate whether this was linked to the expression of sirtuins, genetic disruption of both sirtuins was attempted in all three strains. No dramatic changes in var gene expression occurred in NF54 or FCR-3 following PfSir2b disruption, contrasting with previous observations in 3D7. In 3D7, complementation of the PfSir2a genetic disruption resulted in a significant decrease in previously-elevated var gene expression levels, but with the continued expression of multiple var genes. Finally, rearranged chromosomes were observed in the 3D7 PfSir2a knockout line. Our results focus on the potential for parasite genetic background to contribute to sirtuin function in regulating virulence gene expression and suggest a potential role for sirtuins in maintaining genome integrity.

  3. Functional analysis of sirtuin genes in multiple Plasmodium falciparum strains.

    Science.gov (United States)

    Merrick, Catherine J; Jiang, Rays H Y; Skillman, Kristen M; Samarakoon, Upeka; Moore, Rachel M; Dzikowski, Ron; Ferdig, Michael T; Duraisingh, Manoj T

    2015-01-01

    Plasmodium falciparum, the causative agent of severe human malaria, employs antigenic variation to avoid host immunity. Antigenic variation is achieved by transcriptional switching amongst polymorphic var genes, enforced by epigenetic modification of chromatin. The histone-modifying 'sirtuin' enzymes PfSir2a and PfSir2b have been implicated in this process. Disparate patterns of var expression have been reported in patient isolates as well as in cultured strains. We examined var expression in three commonly used laboratory strains (3D7, NF54 and FCR-3) in parallel. NF54 parasites express significantly lower levels of var genes compared to 3D7, despite the fact that 3D7 was originally a clone of the NF54 strain. To investigate whether this was linked to the expression of sirtuins, genetic disruption of both sirtuins was attempted in all three strains. No dramatic changes in var gene expression occurred in NF54 or FCR-3 following PfSir2b disruption, contrasting with previous observations in 3D7. In 3D7, complementation of the PfSir2a genetic disruption resulted in a significant decrease in previously-elevated var gene expression levels, but with the continued expression of multiple var genes. Finally, rearranged chromosomes were observed in the 3D7 PfSir2a knockout line. Our results focus on the potential for parasite genetic background to contribute to sirtuin function in regulating virulence gene expression and suggest a potential role for sirtuins in maintaining genome integrity.

  4. Application of damage function analysis to reactor coolant circuits

    Energy Technology Data Exchange (ETDEWEB)

    MacDonald, D.D. [Center for Electrochemical Science and Technology, Pennsylvania State Univ., University Park, PA (United States)

    2002-07-01

    The application of deterministic models for simulating stress corrosion cracking phenomena in Boiling Water Reactor primary coolant circuits is described. The first generation code, DAMAGE-PREDICTOR, has been used to model the radiolysis of the coolant, to estimate the electrochemical corrosion potential (ECP), and to calculate the crack growth rate (CGR) at fixed state points during reactor operation in about a dozen plants worldwide. This code has been validated in ''double-blind'' comparisons between the calculated and measured hydrogen concentration, oxygen concentration, and ECP in the recirculation system of the Leibstadt BWR in Switzerland, as well as through less formal comparisons with data from other plants. Second generation codes have now been developed, including REMAIN for simulating BWRs with internal coolant pumps and the ALERT series for modeling reactors with external pumps. One of this series, ALERT, yields the integrated damage function (IDF), which is the crack length versus time, on a component-by-component basis for a specified future operating scenario. This code therefore allows one to explore proposed future operating protocols, with the objective of identifying those that are most cost-effective and which minimizes the risk of failure of components in the coolant circuit by stress corrosion cracking. The application of this code is illustrated by exploring the benefits of partial hydrogen water chemistry (HWC) for an actual reactor, in which hydrogen is added to the feedwater over only limited periods during operation. The simulations show that the benefits, in terms of reduction in the IDFs for various components, are sensitive to when HWC was initiated in the plant life and to the length of time over which it is applied. (author)

  5. Graph theoretical analysis of resting magnetoencephalographic functional connectivity networks

    Directory of Open Access Journals (Sweden)

    Lindsay eRutter

    2013-07-01

    Full Text Available Complex networks have been observed to comprise small-world properties, believed to represent an optimal organization of local specialization and global integration of information processing at reduced wiring cost. Here, we applied magnitude squared coherence to resting magnetoencephalographic time series in reconstructed source space, acquired from controls and patients with schizophrenia, and generated frequency-dependent adjacency matrices modeling functional connectivity between virtual channels. After configuring undirected binary and weighted graphs, we found that all human networks demonstrated highly localized clustering and short characteristic path lengths. The most conservatively thresholded networks showed efficient wiring, with topographical distance between connected vertices amounting to one-third as observed in surrogate randomized topologies. Nodal degrees of the human networks conformed to a heavy-tailed exponentially truncated power-law, compatible with the existence of hubs, which included theta and alpha bilateral cerebellar tonsil, beta and gamma bilateral posterior cingulate, and bilateral thalamus across all frequencies. We conclude that all networks showed small-worldness, minimal physical connection distance, and skewed degree distributions characteristic of physically-embedded networks, and that these calculations derived from graph theoretical mathematics did not quantifiably distinguish between subject populations, independent of bandwidth. However, post-hoc measurements of edge computations at the scale of the individual vertex revealed trends of reduced gamma connectivity across the posterior medial parietal cortex in patients, an observation consistent with our prior resting activation study that found significant reduction of synthetic aperture magnetometry gamma power across similar regions. The basis of these small differences remains unclear.

  6. Quantitative analysis of functional changes caused by pinhole glasses.

    Science.gov (United States)

    Kim, Won Soo; Park, In Ki; Chun, Yeoun Sook

    2014-08-12

    To quantify the visual functional changes caused by pinhole glasses. Healthy subjects underwent ophthalmic examinations including uncorrected distance visual acuity (UDVA) and corrected near visual acuity (CNVA), pupil size, depth of focus (DOF), accommodative amplitude, visual field (VF) test, contrast sensitivity (CS), and stereopsis. Subjects underwent the same examinations while wearing pinhole glasses 1 week later. Forty-eight eyes of 48 subjects (24 male and 24 female) with a mean age of 35.5±6.7 years and a mean spherical equivalent of -2.4±3.3 diopters (D) were enrolled. The pinhole glasses significantly improved UDVA and CNVA (logMAR) from 0.44±0.46 and 0.26±0.40 to 0.19±0.25 and 0.14±0.22, respectively. The pinhole glasses markedly enlarged pupils from 3.6±0.5 mm photopic size to 6.0±0.5 mm, very close to the mesopic size of 6.2±0.6 mm. Mean DOF and accommodative amplitude also significantly increased by approximately 50%, while VF featured a general reduction of sensitivity. Mean deviation (MD) significantly decreased from -0.48±1.57 to -4.22±1.66 dB, and visual field index (VFI) decreased from 99.4±0.7% to 98.4±1.3%. The CS decreased significantly at all four spatial frequencies, and stereopsis deteriorated with pinhole glasses. The pinhole glasses improved visual acuity, DOF, and accommodative amplitude; however, they resulted in decreased visual quality including general reduction of VF sensitivity, CS, and stereopsis. Therefore, particular attention is needed when wearing pinhole glasses while driving, playing sports, or working with instruments. (ClinicalTrials.gov number, NCT02111356.). Copyright 2014 The Association for Research in Vision and Ophthalmology, Inc.

  7. Analysis of cilia structure and function in zebrafish.

    Science.gov (United States)

    Leventea, E; Hazime, K; Zhao, C; Malicki, J

    2016-01-01

    Cilia are microtubule-based protrusions on the surface of most eukaryotic cells. They are found in most, if not all, vertebrate organs. Prominent cilia form in sensory structures, the eye, the ear, and the nose, where they are crucial for the detection of environmental stimuli, such as light and odors. Cilia are also involved in developmental processes, including left-right asymmetry formation, limb morphogenesis, and the patterning of neurons in the neural tube. Some cilia, such as those found in nephric ducts, are thought to have mechanosensory roles. Zebrafish proved very useful in genetic analysis and imaging of cilia-related processes, and in the modeling of mechanisms behind human cilia abnormalities, known as ciliopathies. A number of zebrafish defects resemble those seen in human ciliopathies. Forward and reverse genetic strategies generated a wide range of cilia mutants in zebrafish, which can be studied using sophisticated genetic and imaging approaches. In this chapter, we provide a set of protocols to examine cilia morphology, motility, and cilia-related defects in a variety of organs, focusing on the embryo and early postembryonic development. Copyright © 2016 Elsevier Inc. All rights reserved.

  8. Structural and functional analysis of coral Hypoxia Inducible Factor.

    Directory of Open Access Journals (Sweden)

    Didier Zoccola

    Full Text Available Tissues of symbiotic Cnidarians are exposed to wide, rapid and daily variations of oxygen concentration. Indeed, during daytime, intracellular O2 concentration increases due to symbiont photosynthesis, while during night, respiration of both host cells and symbionts leads to intra-tissue hypoxia. The Hypoxia Inducible Factor 1 (HIF-1 is a heterodimeric transcription factor used for maintenance of oxygen homeostasis and adaptation to hypoxia. Here, we carried out a mechanistic study of the response to variations of O2 concentrations of the coral model Stylophora pistillata. In silico analysis showed that homologs of HIF-1 α (SpiHIF-1α and HIF-1β (SpiHIF-1β exist in coral. A specific SpiHIF-1 DNA binding on mammalian Hypoxia Response Element (HRE sequences was shown in extracts from coral exposed to dark conditions. Then, we cloned the coral HIF-1α and β genes and determined their expression and transcriptional activity. Although HIF-1α has an incomplete Oxygen-dependent Degradation Domain (ODD relative to its human homolog, its protein level is increased under hypoxia when tested in mammalian cells. Moreover, co-transfection of SpiHIF-1α and β in mammalian cells stimulated an artificial promoter containing HRE only in hypoxic conditions. This study shows the strong conservation of molecular mechanisms involved in adaptation to O2 concentration between Cnidarians and Mammals whose ancestors diverged about 1,200-1,500 million years ago.

  9. IMAGING OF BRAIN FUNCTION BASED ON THE ANALYSIS OF FUNCTIONAL CONNECTIVITY - IMAGING ANALYSIS OF BRAIN FUNCTION BY FMRI AFTER ACUPUNCTURE AT LR3 IN HEALTHY INDIVIDUALS

    OpenAIRE

    Zheng, Yu; Wang, Yuying; Lan, Yujun; Qu, Xiaodong; Lin, Kelin; Zhang, Jiping; Qu, Shanshan; Wang, Yanjie; Tang, Chunzhi; Huang, Yong

    2016-01-01

    Objective: This Study observed the relevant brain areas activated by acupuncture at the Taichong acupoint (LR3) and analyzed the functional connectivity among brain areas using resting state functional magnetic resonance imaging (fMRI) to explore the acupoint specificity of the Taichong acupoint. Methods: A total of 45 healthy subjects were randomly divided into the Taichong (LR3) group, sham acupuncture group and sham acupoint group. Subjects received resting state fMRI before acupuncture, a...

  10. Functional analysis of the zebrafish ortholog of HMGCS1 reveals independent functions for cholesterol and isoprenoids in craniofacial development.

    Directory of Open Access Journals (Sweden)

    Anita M Quintana

    Full Text Available There are 8 different human syndromes caused by mutations in the cholesterol synthesis pathway. A subset of these disorders such as Smith-Lemli-Opitz disorder, are associated with facial dysmorphia. However, the molecular and cellular mechanisms underlying such facial deficits are not fully understood, primarily because of the diverse functions associated with the cholesterol synthesis pathway. Recent evidence has demonstrated that mutation of the zebrafish ortholog of HMGCR results in orofacial clefts. Here we sought to expand upon these data, by deciphering the cholesterol dependent functions of the cholesterol synthesis pathway from the cholesterol independent functions. Moreover, we utilized loss of function analysis and pharmacological inhibition to determine the extent of sonic hedgehog (Shh signaling in animals with aberrant cholesterol and/or isoprenoid synthesis. Our analysis confirmed that mutation of hmgcs1, which encodes the first enzyme in the cholesterol synthesis pathway, results in craniofacial abnormalities via defects in cranial neural crest cell differentiation. Furthermore targeted pharmacological inhibition of the cholesterol synthesis pathway revealed a novel function for isoprenoid synthesis during vertebrate craniofacial development. Mutation of hmgcs1 had no effect on Shh signaling at 2 and 3 days post fertilization (dpf, but did result in a decrease in the expression of gli1, a known Shh target gene, at 4 dpf, after morphological deficits in craniofacial development and chondrocyte differentiation were observed in hmgcs1 mutants. These data raise the possibility that deficiencies in cholesterol modulate chondrocyte differentiation by a combination of Shh independent and Shh dependent mechanisms. Moreover, our results describe a novel function for isoprenoids in facial development and collectively suggest that cholesterol regulates craniofacial development through versatile mechanisms.

  11. Stoichiometric Correlation Analysis: Principles of Metabolic Functionality from Metabolomics Data

    Directory of Open Access Journals (Sweden)

    Kevin Schwahn

    2017-12-01

    Full Text Available Recent advances in metabolomics technologies have resulted in high-quality (time-resolved metabolic profiles with an increasing coverage of metabolic pathways. These data profiles represent read-outs from often non-linear dynamics of metabolic networks. Yet, metabolic profiles have largely been explored with regression-based approaches that only capture linear relationships, rendering it difficult to determine the extent to which the data reflect the underlying reaction rates and their couplings. Here we propose an approach termed Stoichiometric Correlation Analysis (SCA based on correlation between positive linear combinations of log-transformed metabolic profiles. The log-transformation is due to the evidence that metabolic networks can be modeled by mass action law and kinetics derived from it. Unlike the existing approaches which establish a relation between pairs of metabolites, SCA facilitates the discovery of higher-order dependence between more than two metabolites. By using a paradigmatic model of the tricarboxylic acid cycle we show that the higher-order dependence reflects the coupling of concentration of reactant complexes, capturing the subtle difference between the employed enzyme kinetics. Using time-resolved metabolic profiles from Arabidopsis thaliana and Escherichia coli, we show that SCA can be used to quantify the difference in coupling of reactant complexes, and hence, reaction rates, underlying the stringent response in these model organisms. By using SCA with data from natural variation of wild and domesticated wheat and tomato accession, we demonstrate that the domestication is accompanied by loss of such couplings, in these species. Therefore, application of SCA to metabolomics data from natural variation in wild and domesticated populations provides a mechanistic way to understanding domestication and its relation to metabolic networks.

  12. Aircraft/Air Traffic Management Functional Analysis Model. Version 2.0; User's Guide

    Science.gov (United States)

    Etheridge, Melvin; Plugge, Joana; Retina, Nusrat

    1998-01-01

    The Aircraft/Air Traffic Management Functional Analysis Model, Version 2.0 (FAM 2.0), is a discrete event simulation model designed to support analysis of alternative concepts in air traffic management and control. FAM 2.0 was developed by the Logistics Management Institute (LMI) a National Aeronautics and Space Administration (NASA) contract. This document provides a guide for using the model in analysis. Those interested in making enhancements or modification to the model should consult the companion document, Aircraft/Air Traffic Management Functional Analysis Model, Version 2.0 Technical Description.

  13. Application of Functional Analysis on a SCADA System of a Thermal Power Plant

    Directory of Open Access Journals (Sweden)

    LAKHOUA, M. N.

    2009-06-01

    Full Text Available The aim of this paper is to present firstly the functionality of a supervisory system for complex processes, and secondly to present the concepts of SCADA (supervisory control and data acquisition systems. A functional analysis technique SADT (Structured Analysis and Design Technique has been applied on an example of a SCADA system of a thermal power plant. This technique allows a functional description of a SCADA system. The paper briefly discusses the functions of a SCADA system and some advantages of the application of functional analysis for the design of a human centered supervisory system. Then the basic principles of the SADT technique applied on the SCADA system are presented. Finally, the different results obtained from the SADT technique are discussed.

  14. Ion-selective electrodes in organic elemental and functional group analysis: a review

    Energy Technology Data Exchange (ETDEWEB)

    Selig, W.

    1977-11-08

    The literature on the use of ion-selective electrodes in organic elemental and functional group analysis is surveyed in some detail. The survey is complete through Chemical Abstracts, Vol. 83 (1975). 40 figures, 52 tables, 236 references.

  15. Concepts of Causality in Psychopathology: Applications in Clinical Assessment, Clinical Case Formulation and Functional Analysis

    NARCIS (Netherlands)

    Haynes, S.H.; O'Brien, W.H.; Kaholokula, J.K.; Witteman, C.L.M.

    2012-01-01

    This paper discusses and integrates concepts of causality in psychopathology, clinical assessment, clinical case formulation and the functional analysis. We propose that identifying causal variables, relations and mechanisms in psychopathology and clinical assessment can lead to more powerful and

  16. Clarifying Inconclusive Functional Analysis Results: Assessment and Treatment of Automatically Reinforced Aggression

    Science.gov (United States)

    Saini, Valdeep; Greer, Brian D.; Fisher, Wayne W.

    2016-01-01

    We conducted a series of studies in which multiple strategies were used to clarify the inconclusive results of one boy’s functional analysis of aggression. Specifically, we (a) evaluated individual response topographies to determine the composition of aggregated response rates, (b) conducted a separate functional analysis of aggression after high rates of disruption masked the consequences maintaining aggression during the initial functional analysis, (c) modified the experimental design used during the functional analysis of aggression to improve discrimination and decrease interaction effects between conditions, and (d) evaluated a treatment matched to the reinforcer hypothesized to maintain aggression. An effective yet practical intervention for aggression was developed based on the results of these analyses and from data collected during the matched-treatment evaluation. PMID:25891269

  17. Functional materials analysis using in situ and in operando X-ray and neutron scattering.

    Science.gov (United States)

    Peterson, Vanessa K; Papadakis, Christine M

    2015-03-01

    In situ and in operando studies are commonplace and necessary in functional materials research. This review highlights recent developments in the analysis of functional materials using state-of-the-art in situ and in operando X-ray and neutron scattering and analysis. Examples are given covering a number of important materials areas, alongside a description of the types of information that can be obtained and the experimental setups used to acquire them.

  18. Functional materials analysis using in situ and in operando X-ray and neutron scattering

    Directory of Open Access Journals (Sweden)

    Vanessa K. Peterson

    2015-03-01

    Full Text Available In situ and in operando studies are commonplace and necessary in functional materials research. This review highlights recent developments in the analysis of functional materials using state-of-the-art in situ and in operando X-ray and neutron scattering and analysis. Examples are given covering a number of important materials areas, alongside a description of the types of information that can be obtained and the experimental setups used to acquire them.

  19. Functional materials analysis using in situ and in operando X-ray and neutron scattering

    Science.gov (United States)

    Peterson, Vanessa K.; Papadakis, Christine M.

    2015-01-01

    In situ and in operando studies are commonplace and necessary in functional materials research. This review highlights recent developments in the analysis of functional materials using state-of-the-art in situ and in operando X-ray and neutron scattering and analysis. Examples are given covering a number of important materials areas, alongside a description of the types of information that can be obtained and the experimental setups used to acquire them. PMID:25866665

  20. The peripheral dopaminergic system: morphological analysis, functional and clinical applications.

    Science.gov (United States)

    Amenta, F; Ricci, A; Tayebati, S K; Zaccheo, D

    2002-01-01

    . Dopamine acting as autocrine or paracrine substance is probably involved in the regulation of immune activity. Human peripheral blood lymphocytes contain dopamine and express plasma membrane and vesicular dopamine transporters as well as dopamine D3, D4 and D5 receptors. Another recently characterized peripheral dopaminergic system is located in the lung. Dopamine D1-like receptor immunoreactive structures were found in a small percentage of nerve fibres contained in pulmonary nerve trunks. D1-immunoreactive nerve fibres were approximately 2-3% of total fibres, whereas D5-immunoreactive fibres accounted approximately for 5-6% of total fibres. Also dopamine D2-like receptor immunoreactive fibres were found in pulmonary trunks. D2-immunoreactive fibres accounted for approximately 3-5% of total nerve fibres, D3 receptor-immnunoreactive fibres accounted for about 8-10% of total nerve fibres, whereas only rare profiles of D4 receptor protein-immunoreactive fibres were observed. Dopamine recepetor protein immunostaining was also found in neurons of nodose ganglion, that display immunoreactivity for different neuropeptides. Based on the correspondence between the number of dopamine receptor immunoreactive pulmonary nerve fibres and of vagal ganglionic neurons immunoreactive for dopamine receptors it is possible to hypothesize that these receptors are located on pulmonary afferents. In spite of the heterogeneity of peripheral systems expressing dopamine receptors, analysis of their localization with appropriate microanatomical techniques may contribute to investigate their role in health and disease.

  1. A Comparison of Experimental Functional Analysis and the Questions about Behavioral Function (QABF) in the Assessment of Challenging Behavior of Individuals with Autism

    Science.gov (United States)

    Healy, Olive; Brett, Denise; Leader, Geraldine

    2013-01-01

    We compared two functional behavioral assessment methods: the Questions About Behavioral Function (QABF; a standardized test) and experimental functional analysis (EFA) to identify behavioral functions of aggressive/destructive behavior, self-injurious behavior and stereotypy in 32 people diagnosed with autism. Both assessments found that self…

  2. A systemic functional analysis of conjunction in Au Revoir les Enfants

    African Journals Online (AJOL)

    ... is accompanied by shifts and transformations at the lexical, phonological and syntactic levels. On the basis of these shifts and transformations, twelve strategies are developed to serve as models or teaching mechanisms in subtitler training. Keywords: systemic functional analysis, systemic functional grammar, conjunction, ...

  3. Trade-off between growth and immune function : a meta-analysis of selection experiments

    NARCIS (Netherlands)

    van der Most, Peter; de Jong, Berber; Parmentier, Henk K.; Verhulst, Simon

    P>1. Evidence suggests that developing and maintaining an effective immune system may be costly and that an organism has to make a trade-off between immune function and other fitness-enhancing traits. To test for a trade-off between growth and immune function we carried out a meta-analysis of data

  4. Trade-off between growth and immune function: a meta-analysis of selection experiments

    NARCIS (Netherlands)

    Most, van der P.J.; Jong, de B.; Parmentier, H.K.; Verhulst, S.

    2011-01-01

    1. Evidence suggests that developing and maintaining an effective immune system may be costly and that an organism has to make a trade-off between immune function and other fitness-enhancing traits. To test for a trade-off between growth and immune function we carried out a meta-analysis of data

  5. Training Public School Special Educators to Implement Two Functional Analysis Models

    Science.gov (United States)

    Rispoli, Mandy; Neely, Leslie; Healy, Olive; Gregori, Emily

    2016-01-01

    The purpose of this study was to investigate the efficacy and efficiency of a training package to teach public school special educators to conduct functional analyses of challenging behavior. Six public school educators were divided into two cohorts of three and were taught two models of functional analysis of challenging behavior: traditional and…

  6. Functional Analysis and Treatment of Human-Directed Undesirable Behavior Exhibited by a Captive Chimpanzee

    Science.gov (United States)

    Martin, Allison L.; Bloomsmith, Mollie A.; Kelley, Michael E.; Marr, M. Jackson; Maple, Terry L.

    2011-01-01

    A functional analysis identified the reinforcer maintaining feces throwing and spitting exhibited by a captive adult chimpanzee ("Pan troglodytes"). The implementation of a function-based treatment combining extinction with differential reinforcement of an alternate behavior decreased levels of inappropriate behavior. These findings further…

  7. The suffix-free-prefix-free hash function construction and its indifferentiability security analysis

    DEFF Research Database (Denmark)

    Bagheri, Nasour; Gauravaram, Praveen; Knudsen, Lars R.

    2012-01-01

    In this paper, we observe that in the seminal work on indifferentiability analysis of iterated hash functions by Coron et al. and in subsequent works, the initial value $$(IV)$$ of hash functions is fixed. In addition, these indifferentiability results do not depend on the Merkle–Damgård (MD...

  8. A family of singular functions and its relation to harmonic fractal analysis and fuzzy logic

    Directory of Open Access Journals (Sweden)

    de Amo Enrique

    2016-01-01

    Full Text Available We study a parameterized family of singular functions which appears in a paper by H. Okamoto and M. Wunsch (2007. Various properties are revisited from the viewpoint of fractal geometry and probabilistic techniques. Hausdorff dimensions are calculated for several sets related to these functions, and new properties close to fractal analysis and strong negations are explored.

  9. Free vibrations and buckling analysis of laminated plates by oscillatory radial basis functions

    Science.gov (United States)

    Neves, A. M. A.; Ferreira, A. J. M.

    2015-12-01

    In this paper the free vibrations and buckling analysis of laminated plates is performed using a global meshless method. A refined version of Kant's theorie which accounts for transverse normal stress and through-the-thickness deformation is used. The innovation is the use of oscillatory radial basis functions. Numerical examples are performed and results are presented and compared to available references. Such functions proved to be an alternative to the tradicional nonoscillatory radial basis functions.

  10. Frames and other bases in abstract and function spaces novel methods in harmonic analysis

    CERN Document Server

    Gia, Quoc; Mayeli, Azita; Mhaskar, Hrushikesh; Zhou, Ding-Xuan

    2017-01-01

    The first of a two volume set on novel methods in harmonic analysis, this book draws on a number of original research and survey papers from well-known specialists detailing the latest innovations and recently discovered links between various fields. Along with many deep theoretical results, these volumes contain numerous applications to problems in signal processing, medical imaging, geodesy, statistics, and data science. The chapters within cover an impressive range of ideas from both traditional and modern harmonic analysis, such as: the Fourier transform, Shannon sampling, frames, wavelets, functions on Euclidean spaces, analysis on function spaces of Riemannian and sub-Riemannian manifolds, Fourier analysis on manifolds and Lie groups, analysis on combinatorial graphs, sheaves, co-sheaves, and persistent homologies on topological spaces. Volume I is organized around the theme of frames and other bases in abstract and function spaces, covering topics such as: The advanced development of frames, including ...

  11. Control-Flow Analysis of Function Calls and Returns by Abstract Interpretation

    DEFF Research Database (Denmark)

    Midtgaard, Jan; Jensen, Thomas P.

    We derive a control-flow analysis that approximates the interprocedural control-flow of both function calls and returns in the presence of first-class functions and tail-call optimization. In addition to an abstract environment, our analysis computes for each expression an abstract control stack......, effectively approximating where function calls return across optimized tail calls. The analysis is systematically calculated by abstract interpretation of the stack-based CaEK abstract machine of Flanagan et al. using a series of Galois connections. Abstract interpretation provides a unifying setting in which...... we 1) prove the analysis equivalent to the composition of a continuation-passing style (CPS) transformation followed by an abstract interpretation of a stack-less CPS machine, and 2) extract an equivalent constraint-based analysis formulation, thereby providing a rational reconstruction...

  12. Meta-analysis of neuropsychological measures of executive functioning in children and adolescents with high-functioning autism spectrum disorder.

    Science.gov (United States)

    Lai, Chun Lun Eric; Lau, Zoe; Lui, Simon S Y; Lok, Eugenia; Tam, Venus; Chan, Quinney; Cheng, Koi Man; Lam, Siu Man; Cheung, Eric F C

    2017-05-01

    Existing literature on the profile of executive dysfunction in autism spectrum disorder showed inconsistent results. Age, comorbid attention-deficit/hyperactivity disorder (ADHD) and cognitive abilities appeared to play a role in confounding the picture. Previous meta-analyses have focused on a few components of executive functions. This meta-analysis attempted to delineate the profile of deficit in several components of executive functioning in children and adolescents with high-functioning autism spectrum disorder (HFASD). Ninety-eight English published case-control studies comparing children and adolescents with HFASD with typically developing controls using well-known neuropsychological measures to assess executive functions were included. Results showed that children and adolescents with HFASD were moderately impaired in verbal working memory (g = 0.67), spatial working memory (g = 0.58), flexibility (g = 0.59), planning (g = 0.62), and generativity (g = 0.60) except for inhibition (g = 0.41). Subgroup analysis showed that impairments were still significant for flexibility (g = 0.57-0.61), generativity (g = 0.52-0.68), and working memory (g = 0.49-0.56) in a sample of autism spectrum disorder (ASD) subjects without comorbid ADHD or when the cognitive abilities of the ASD group and the control group were comparable. This meta-analysis confirmed the presence of executive dysfunction in children and adolescents with HFASD. These deficits are not solely accounted for by the effect of comorbid ADHD and the general cognitive abilities. Our results support the executive dysfunction hypothesis and contribute to the clinical understanding and possible development of interventions to alleviate these deficits in children and adolescents with HFASD. Autism Res 2017, 10: 911-939. © 2016 International Society for Autism Research, Wiley Periodicals, Inc. © 2016 International Society for Autism Research, Wiley Periodicals, Inc.

  13. ANALYSIS OF SHIP ARRIVAL FUNCTIONS IN DISCRETE EVENT SIMULATION MODELS OF AN IRON ORE EXPORT TERMINAL

    Directory of Open Access Journals (Sweden)

    Romeu Rodrigues

    2016-04-01

    Full Text Available ABSTRACT This work evaluates the results of different distribution functions of ships arrivals in the simulation of an iron ore export terminal under implementation. The system adopted for the analysis applied a real case designed for installation of a Brazilian company terminal. The analysis was carried out by a discrete event simulation model. Variations of up to 566% in predicting demurrage paid to ships are detected. A database with 2,518 arrivals of ships demonstrates that, unlike recommendations of the traditional literature, the Pearson 6 function is the one that better represents the distribution to a shipping terminal of iron ore than the Exponential, Erlang and Weibull functions.

  14. Modelling injection moulding machines for micro manufacture applications through functional analysis

    DEFF Research Database (Denmark)

    Fantoni, G.; Tosello, Guido; Gabelloni, D.

    2012-01-01

    The paper presents the analysis of an injection moulding machine using functional analysis to identify both its critical components and possible working problems when such a machine is employed for the production of polymer-based micro products. The step-by-step procedure starts from the study of...

  15. Functional and Semantic Analysis of Comparative Structures in Russian and Kazakh Languages

    Directory of Open Access Journals (Sweden)

    Zanipa Zh. Bekmambetova

    2013-01-01

    Full Text Available The article is concerned with theoretical and practical aspects of contrastive linguistics, types of contrastive analysis, the history of comparative study of the Russian and Kazakh language, attempts to make functional and semantic analysis of comparative structures in the Russian and Kazakh languages

  16. Addendum: Factor Analysis of Explanatory Variables in an Achievement Production Function

    Science.gov (United States)

    Phelps, James L.

    2011-01-01

    Combining explanatory variables into factors instead of using individual variables in an achievement production function is advocated in several of the articles in this special issue. This article provides a brief overview of factor analysis explaining and illustrating the reasoning for this technique. There is a linchpin: Factor analysis is an…

  17. Explanation of the project - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us The Rice Growth Monitoring for The Phenotypic Functional Analysis Explanation of the project...icy | Contact Us Explanation of the project - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ...

  18. Download - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available List Contact us The Rice Growth Monitoring for The Phenotypic Functional Analysis Download First of all, ple...e Policy | Contact Us Download - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ...

  19. Graph of growth data - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

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    Full Text Available List Contact us The Rice Growth Monitoring for The Phenotypic Functional Analysis Graph of growth data Data ... The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ...

  20. A new insight into masticatory function and its determinants: a latent class analysis.

    Science.gov (United States)

    Feizi, Awat; Keshteli, Ammar Hassanzadeh; Khazaei, Saber; Adibi, Peyman

    2016-02-01

    Masticatory function is an important factor for preservation of general health. Epidemiologic data on masticatory function and its determinants among Iranian population are sparse, and no study has evaluated masticatory function using latent class analysis (LCA). This study was conducted to investigate the masticatory function and its determinants among a large sample of Iranian adults. In a cross-sectional study among 8691 adults, masticatory function was investigated using a validated questionnaire. LCA and latent class regression (LCR) were applied to identify classes of masticatory function and its potential determinants, respectively. In addition, multigroup LCA was conducted based on gender and age categories. In total, 11.24% and 24.87% of participants had poor and moderate masticatory function, respectively. Males (class size: 14.33%) were more likely to have poor masticatory function than females (class size: 2.35%) (P masticatory function. Nonsmokers had a lower chance of being in poor masticatory function class than heavy smokers (OR: 0.21, 95% CI: 0.11-0.38, P masticatory function is high among Iranian adults. Aging, male gender, low levels of physical activity, and smoking were found to be associated with poor masticatory function. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  1. FC-NIRS: A Functional Connectivity Analysis Tool for Near-Infrared Spectroscopy Data

    Directory of Open Access Journals (Sweden)

    Jingping Xu

    2015-01-01

    Full Text Available Functional near-infrared spectroscopy (fNIRS, a promising noninvasive imaging technique, has recently become an increasingly popular tool in resting-state brain functional connectivity (FC studies. However, the corresponding software packages for FC analysis are still lacking. To facilitate fNIRS-based human functional connectome studies, we developed a MATLAB software package called “functional connectivity analysis tool for near-infrared spectroscopy data” (FC-NIRS. This package includes the main functions of fNIRS data preprocessing, quality control, FC calculation, and network analysis. Because this software has a friendly graphical user interface (GUI, FC-NIRS allows researchers to perform data analysis in an easy, flexible, and quick way. Furthermore, FC-NIRS can accomplish batch processing during data processing and analysis, thereby greatly reducing the time cost of addressing a large number of datasets. Extensive experimental results using real human brain imaging confirm the viability of the toolbox. This novel toolbox is expected to substantially facilitate fNIRS-data-based human functional connectome studies.

  2. FC-NIRS: A Functional Connectivity Analysis Tool for Near-Infrared Spectroscopy Data.

    Science.gov (United States)

    Xu, Jingping; Liu, Xiangyu; Zhang, Jinrui; Li, Zhen; Wang, Xindi; Fang, Fang; Niu, Haijing

    2015-01-01

    Functional near-infrared spectroscopy (fNIRS), a promising noninvasive imaging technique, has recently become an increasingly popular tool in resting-state brain functional connectivity (FC) studies. However, the corresponding software packages for FC analysis are still lacking. To facilitate fNIRS-based human functional connectome studies, we developed a MATLAB software package called "functional connectivity analysis tool for near-infrared spectroscopy data" (FC-NIRS). This package includes the main functions of fNIRS data preprocessing, quality control, FC calculation, and network analysis. Because this software has a friendly graphical user interface (GUI), FC-NIRS allows researchers to perform data analysis in an easy, flexible, and quick way. Furthermore, FC-NIRS can accomplish batch processing during data processing and analysis, thereby greatly reducing the time cost of addressing a large number of datasets. Extensive experimental results using real human brain imaging confirm the viability of the toolbox. This novel toolbox is expected to substantially facilitate fNIRS-data-based human functional connectome studies.

  3. Functional analysis, harmonic analysis, and image processing a collection of papers in honor of Bj"orn Jawerth

    CERN Document Server

    Cwikel, Michael

    2017-01-01

    This volume is dedicated to the memory of Björn Jawerth. It contains original research contributions and surveys in several of the areas of mathematics to which Björn made important contributions. Those areas include harmonic analysis, image processing, and functional analysis, which are of course interrelated in many significant and productive ways. Among the contributors are some of the world's leading experts in these areas. With its combination of research papers and surveys, this book may become an important reference and research tool. This book should be of interest to advanced graduate students and professional researchers in the areas of functional analysis, harmonic analysis, image processing, and approximation theory. It combines articles presenting new research with insightful surveys written by foremost experts.

  4. Discriminant analysis of resting-state functional connectivity patterns on the Grassmann manifold

    Science.gov (United States)

    Fan, Yong; Liu, Yong; Jiang, Tianzi; Liu, Zhening; Hao, Yihui; Liu, Haihong

    2010-03-01

    The functional networks, extracted from fMRI images using independent component analysis, have been demonstrated informative for distinguishing brain states of cognitive functions and neurological diseases. In this paper, we propose a novel algorithm for discriminant analysis of functional networks encoded by spatial independent components. The functional networks of each individual are used as bases for a linear subspace, referred to as a functional connectivity pattern, which facilitates a comprehensive characterization of temporal signals of fMRI data. The functional connectivity patterns of different individuals are analyzed on the Grassmann manifold by adopting a principal angle based subspace distance. In conjunction with a support vector machine classifier, a forward component selection technique is proposed to select independent components for constructing the most discriminative functional connectivity pattern. The discriminant analysis method has been applied to an fMRI based schizophrenia study with 31 schizophrenia patients and 31 healthy individuals. The experimental results demonstrate that the proposed method not only achieves a promising classification performance for distinguishing schizophrenia patients from healthy controls, but also identifies discriminative functional networks that are informative for schizophrenia diagnosis.

  5. Genome-wide functional analysis of SSR for an edible mushroom Pleurotus ostreatus.

    Science.gov (United States)

    Qu, Jibin; Huang, Chenyang; Zhang, Jinxia

    2016-01-10

    Simple sequence repeats (SSRs) play specific roles in many biological activities. In this paper, we focused on SSRs in the genome of Pleurotus ostreatus, which is a widely cultivated edible mushroom. The distribution curves of SSRs and exons are opposite throughout the genome, which means that SSRs are mostly located in non-coding regions. A comparative analysis of nine fungi suggests that Agaricomycotina fungi have similar SSR distributions. Functional enrichment analysis on the SSR-containing gene set uncovers enriched functions about environmental interactions and important cellular functions for life. Trinucleotide SSRs account for an extremely high fraction of all SSRs, and in exonic regions, they are equivalent to inserting repeating amino acids (RAAs) into the protein sequences. The RAA indel could partly explain some enriched functions of the genes they modify. Agaricomycotina fungi have similar distributions of RAAs, indicating that this may be a potential common mechanism for some specific functions. Copyright © 2015 Elsevier B.V. All rights reserved.

  6. Functional analysis

    CERN Document Server

    Bachman, George

    1998-01-01

    Excellent treatment of the subject geared toward students with background in linear algebra, advanced calculus, physics and engineering. Text covers introduction to inner-product spaces, normed and metric spaces, and topological spaces; complete orthonormal sets, the Hahn-Banach theorem and its consequences, spectral notions, square roots, a spectral decomposition theorem, and many other related subjects. Chapters conclude with exercises intended to test and reinforce reader's understanding of text material. A glossary of definitions, detailed proofs of theorems, bibliography, and index of sym

  7. Software Ion Scan Functions in Analysis of Glycomic and Lipidomic MS/MS Datasets.

    Science.gov (United States)

    Haramija, Marko

    2017-12-29

    Hardware ion scan functions unique to MS/MS mode of data acquisition, such as precursor ion scan (PIS) and neutral loss scan (NLS) are important for selective extraction of key structural data from complex MS/MS spectra. However, their software counterparts, software ion scan (SIS) functions, are still not regularly available. SIS functions can be easily coded for additional functionalities, such as software multiple precursor ion scan (sMPIS), software no ion scan (sNIS) and software variable ion scan (sVIS) functions. These are often necessary, since they allow more efficient analysis of complex MS/MS datasets, often encountered in glycomics and lipidomics. SIS functions can be easily coded using modern script languages, and are independent of instrument manufacturer. Here we show one example of utility of SIS functions on a medium-size glycomic MS/MS dataset. Knowledge of sample properties, as well as of diagnostic and conditional diagnostic ions crucial for data analysis was needed. Based on tables constructed with output data from the SIS functions performed, a detailed analysis of a complex MS/MS glycomic dataset could be carried out in a quick, accurate and efficient manner. Glycomic research is progressing slowly, and with respect to MS experiments, one of the key obstacles for moving forward is the lack of appropriate bioinformatic tools necessary for fast analysis of glycomic MS/MS datasets. Adding novel software ion scan functionalities to the glycomic MS/MS toolbox has a potential to significantly speed up the glycomic data analysis process. Similar tools are useful for analyses of lipidomic MS/MS datasets as well, as will be discussed briefly. This article is protected by copyright. All rights reserved.

  8. Using Trial-Based Functional Analysis to Design Effective Interventions for Students Diagnosed with Autism Spectrum Disorder

    Science.gov (United States)

    Larkin, Wallace; Hawkins, Renee O.; Collins, Tai

    2016-01-01

    Functional behavior assessments and function-based interventions are effective methods for addressing the challenging behaviors of children; however, traditional functional analysis has limitations that impact usability in applied settings. Trial-based functional analysis addresses concerns relating to the length of time, level of expertise…

  9. Database Description - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us The Rice Growth Monitoring for The Phenotypic Functional Analysis Database Description Gener...al information of database Database name The Rice Growth Monitoring for the Phenotypic Functional Analysis A...- The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ...

  10. Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam.

    Science.gov (United States)

    Chai, Juanjuan; Kora, Guruprasad; Ahn, Tae-Hyuk; Hyatt, Doug; Pan, Chongle

    2014-10-09

    Phylogenetic studies have provided detailed knowledge on the evolutionary mechanisms of genes and species in Bacteria and Archaea. However, the evolution of cellular functions, represented by metabolic pathways and biological processes, has not been systematically characterized. Many clades in the prokaryotic tree of life have now been covered by sequenced genomes in GenBank. This enables a large-scale functional phylogenomics study of many computationally inferred cellular functions across all sequenced prokaryotes. A total of 14,727 GenBank prokaryotic genomes were re-annotated using a new protein family database, UniFam, to obtain consistent functional annotations for accurate comparison. The functional profile of a genome was represented by the biological process Gene Ontology (GO) terms in its annotation. The GO term enrichment analysis differentiated the functional profiles between selected archaeal taxa. 706 prokaryotic metabolic pathways were inferred from these genomes using Pathway Tools and MetaCyc. The consistency between the distribution of metabolic pathways in the genomes and the phylogenetic tree of the genomes was measured using parsimony scores and retention indices. The ancestral functional profiles at the internal nodes of the phylogenetic tree were reconstructed to track the gains and losses of metabolic pathways in evolutionary history. Our functional phylogenomics analysis shows divergent functional profiles of taxa and clades. Such function-phylogeny correlation stems from a set of clade-specific cellular functions with low parsimony scores. On the other hand, many cellular functions are sparsely dispersed across many clades with high parsimony scores. These different types of cellular functions have distinct evolutionary patterns reconstructed from the prokaryotic tree.

  11. FUNCTIONAL ANALYSIS OF FUTURE MUSIC ART TEACHERS’ TRAINING FOR SINGING ACTIVITY OF COMPREHENSIVE SCHOOL SENIOR STUDENTS

    Directory of Open Access Journals (Sweden)

    Ma Chen

    2017-04-01

    Full Text Available In the article the functional analysis of future music art teachers’ training for singing activity of comprehensive school senior students is depicted. This issue is very important because improving educators and musicians’ training contributes not only to professional selfactualisation, but also to young generation’s encouraging for thorough learning music art works and their creative development in the process of group music tuitions. Extracurricular singing activity also plays an important part. It reveals art images to students, enriching creativity experience, forms the spiritual world, develops independent thinking, awakens creativity. The author points out the main functions of future music art teachers’ training. They are system and value, information, communication, creative and transformative, projective functions. The special attention is paid to characterizing the features of each function. The author claims that system and value function relates to the necessity to analyze the results of the educational process that contributes to productive solving problems by students and main tasks of music training. Information function is a subject background of art music teachers’ and pedagogical activities. Communicative function is realized in a teacher’s ability to develop the student’ initiative to plan cooperative activities, to be able to distribute duties, to carry out instructions, to coordinate cooperative activities, to create special situations for the implementation of educational influence. The analysis of pedagogical and methodological literature shows that The creative and transformative function is manifested in the creative use of pedagogical and methodological ideas in specific pedagogical conditions. The projective function is thought to promote the most complete realization of content of comprehensive and art education. Functional analysis of students’ training of art faculties at pedagogical universities to

  12. Sequential analysis of surfactant, lung function and inflammation in cystic fibrosis patients

    Directory of Open Access Journals (Sweden)

    Paul Karl

    2005-11-01

    Full Text Available Abstract Background In a cross-sectional analysis of cystic fibrosis (CF patients with mild lung disease, reduced surfactant activity was correlated to increased neutrophilic airway inflammation, but not to lung function. So far, longitudinal measurements of surfactant function in CF patients are lacking and it remains unclear how these alterations relate to the progression of airway inflammation as well as decline in pulmonary function over time. Methods As part of the BEAT trial, a longitudinal study to assess the course of airway inflammation in CF, we studied lung function, surfactant function and endobronchial inflammation using bronchoalveolar lavage fluid from 20 CF patients with normal pulmonary function (median FEV1 94% of predicted at three times over a three year period. Results There was a progressive loss of surfactant function, assessed as minimal surface tension. The decline in surfactant function was negatively correlated to an increase in neutrophilic inflammation and a decrease in lung function, assessed by FEV1, MEF75/25%VC, and MEF25%VC. The concentrations of the surfactant specific proteins A, C and D did not change, whereas SP-B increased during this time period. Conclusion Our findings suggest a link between loss of surfactant function driven by progressive airway inflammation and loss of small airway function in CF patients with limited lung disease.

  13. Representation of the Physiological Factors Contributing to Postflight Changes in Functional Performance Using Motion Analysis Software

    Science.gov (United States)

    Parks, Kelsey

    2010-01-01

    Astronauts experience changes in multiple physiological systems due to exposure to the microgravity conditions of space flight. To understand how changes in physiological function influence functional performance, a testing procedure has been developed that evaluates both astronaut postflight functional performance and related physiological changes. Astronauts complete seven functional and physiological tests. The objective of this project is to use motion tracking and digitizing software to visually display the postflight decrement in the functional performance of the astronauts. The motion analysis software will be used to digitize astronaut data videos into stick figure videos to represent the astronauts as they perform the Functional Tasks Tests. This project will benefit NASA by allowing NASA scientists to present data of their neurological studies without revealing the identities of the astronauts.

  14. A Network Analysis Approach to fMRI Condition-Specific Functional Connectivity

    CERN Document Server

    Shinkareva, Svetlana V; Wang, Jing

    2010-01-01

    In this work we focus on examination and comparison of whole-brain functional connectivity patterns measured with fMRI across experimental conditions. Direct examination and comparison of condition-specific matrices is challenging due to the large number of elements in a connectivity matrix. We present a framework that uses network analysis to describe condition-specific functional connectivity. Treating the brain as a complex system in terms of a network, we extract the most relevant connectivity information by partitioning each network into clusters representing functionally connected brain regions. Extracted clusters are used as features for predicting experimental condition in a new data set. The approach is illustrated on fMRI data examining functional connectivity patterns during processing of abstract and concrete concepts. Topological (brain regions) and functional (level of connectivity and information flow) systematic differences in the ROI-based functional networks were identified across participan...

  15. Identification and functional analysis of light-responsive unique genes and gene family members in rice.

    Directory of Open Access Journals (Sweden)

    Ki-Hong Jung

    2008-08-01

    Full Text Available Functional redundancy limits detailed analysis of genes in many organisms. Here, we report a method to efficiently overcome this obstacle by combining gene expression data with analysis of gene-indexed mutants. Using a rice NSF45K oligo-microarray to compare 2-week-old light- and dark-grown rice leaf tissue, we identified 365 genes that showed significant 8-fold or greater induction in the light relative to dark conditions. We then screened collections of rice T-DNA insertional mutants to identify rice lines with mutations in the strongly light-induced genes. From this analysis, we identified 74 different lines comprising two independent mutant lines for each of 37 light-induced genes. This list was further refined by mining gene expression data to exclude genes that had potential functional redundancy due to co-expressed family members (12 genes and genes that had inconsistent light responses across other publicly available microarray datasets (five genes. We next characterized the phenotypes of rice lines carrying mutations in ten of the remaining candidate genes and then carried out co-expression analysis associated with these genes. This analysis effectively provided candidate functions for two genes of previously unknown function and for one gene not directly linked to the tested biochemical pathways. These data demonstrate the efficiency of combining gene family-based expression profiles with analyses of insertional mutants to identify novel genes and their functions, even among members of multi-gene families.

  16. Advances in the quantification of mitochondrial function in primary human immune cells through extracellular flux analysis.

    Science.gov (United States)

    Nicholas, Dequina; Proctor, Elizabeth A; Raval, Forum M; Ip, Blanche C; Habib, Chloe; Ritou, Eleni; Grammatopoulos, Tom N; Steenkamp, Devin; Dooms, Hans; Apovian, Caroline M; Lauffenburger, Douglas A; Nikolajczyk, Barbara S

    2017-01-01

    Numerous studies show that mitochondrial energy generation determines the effectiveness of immune responses. Furthermore, changes in mitochondrial function may regulate lymphocyte function in inflammatory diseases like type 2 diabetes. Analysis of lymphocyte mitochondrial function has been facilitated by introduction of 96-well format extracellular flux (XF96) analyzers, but the technology remains imperfect for analysis of human lymphocytes. Limitations in XF technology include the lack of practical protocols for analysis of archived human cells, and inadequate data analysis tools that require manual quality checks. Current analysis tools for XF outcomes are also unable to automatically assess data quality and delete untenable data from the relatively high number of biological replicates needed to power complex human cell studies. The objectives of work presented herein are to test the impact of common cellular manipulations on XF outcomes, and to develop and validate a new automated tool that objectively analyzes a virtually unlimited number of samples to quantitate mitochondrial function in immune cells. We present significant improvements on previous XF analyses of primary human cells that will be absolutely essential to test the prediction that changes in immune cell mitochondrial function and fuel sources support immune dysfunction in chronic inflammatory diseases like type 2 diabetes.

  17. MonaLisa--visualization and analysis of functional modules in biochemical networks.

    Science.gov (United States)

    Einloft, Jens; Ackermann, Jörg; Nöthen, Joachim; Koch, Ina

    2013-06-01

    Structural modeling of biochemical networks enables qualitative as well as quantitative analysis of those networks. Automated network decomposition into functional modules is a crucial point in network analysis. Although there exist approaches for the analysis of networks, there is no open source tool available that combines editing, visualization and the computation of steady-state functional modules. We introduce a new tool called MonaLisa, which combines computation and visualization of functional modules as well as an editor for biochemical Petri nets. The analysis techniques allow for network decomposition into functional modules, for example t-invariants (elementary modes), maximal common transition sets, minimal cut sets and t-clusters. The graphical user interface provides various functionalities to construct and modify networks as well as to visualize the results of the analysis. MonaLisa is licensed under the Artistic License 2.0. It is freely available at http://www.bioinformatik.uni-frankfurt.de/software.html. MonaLisa requires at least Java 6 and runs under Linux, Microsoft Windows and Mac OS.

  18. Aberrant functional connectivity for diagnosis of major depressive disorder: a discriminant analysis.

    Science.gov (United States)

    Cao, Longlong; Guo, Shuixia; Xue, Zhimin; Hu, Yong; Liu, Haihong; Mwansisya, Tumbwene E; Pu, Weidan; Yang, Bo; Liu, Chang; Feng, Jianfeng; Chen, Eric Y H; Liu, Zhening

    2014-02-01

    Aberrant brain functional connectivity patterns have been reported in major depressive disorder (MDD). It is unknown whether they can be used in discriminant analysis for diagnosis of MDD. In the present study we examined the efficiency of discriminant analysis of MDD by individualized computer-assisted diagnosis. Based on resting-state functional magnetic resonance imaging data, a new approach was adopted to investigate functional connectivity changes in 39 MDD patients and 37 well-matched healthy controls. By using the proposed feature selection method, we identified significant altered functional connections in patients. They were subsequently applied to our analysis as discriminant features using a support vector machine classification method. Furthermore, the relative contribution of functional connectivity was estimated. After subset selection of high-dimension features, the support vector machine classifier reached up to approximately 84% with leave-one-out training during the discrimination process. Through summarizing the classification contribution of functional connectivities, we obtained four obvious contribution modules: inferior orbitofrontal module, supramarginal gyrus module, inferior parietal lobule-posterior cingulated gyrus module and middle temporal gyrus-inferior temporal gyrus module. The experimental results demonstrated that the proposed method is effective in discriminating MDD patients from healthy controls. Functional connectivities might be useful as new biomarkers to assist clinicians in computer auxiliary diagnosis of MDD. © 2013 The Authors. Psychiatry and Clinical Neurosciences © 2013 Japanese Society of Psychiatry and Neurology.

  19. The comparative and functional analysis of myth and ritual as constituent parts of a mythoritual religious

    Directory of Open Access Journals (Sweden)

    Ivan Davydov

    2013-02-01

    Full Text Available The author treats the problem of ritual studies as relevant to the study of religion. Mytho-ritual is a relatively new concept, unfamiliar to many specialists. The author tries to define this concept, trace its origin and essential characteristics, and finally, on the basis of all this, posit a link uniting myth and ritual. Importance is given to the functional analysis of ritual, highlighting the essential role of ritual and rite. The theories of the Bielefeld and Moscow schools, the theory of V. N. Toporov regarding religious ritual, and those regarding ritual and rite proposed by A. K. Baiburin and K. S. Saringulyan are examined. The author then proceeds to an analysis of the functions of myth and examines the theories of M. Eliade and the Cambridge School. Finally the author compares the various functions of myth and ritual and fi nds that the number of actual functions of myth proposed by Russian and foreign experts, sociologists, ethnologists and folklorists, is rather small and closer in number to that of the functions of religion rather than of ritual. The author enumerates 36 functions of ritual as compared to only 12 functions of myth and 24 functions of religion

  20. Mapping wetland functions using Earth observation data and multi-criteria analysis.

    Science.gov (United States)

    Rapinel, Sébastien; Hubert-Moy, Laurence; Clément, Bernard; Maltby, Edward

    2016-11-01

    Wetland functional assessment is commonly conducted based on field observations, and thus, is generally limited to small areas. However, there is often a need for wetland managers to obtain information on wetland functional performance over larger areas. For this purpose, we are proposing a new field-based functional assessment procedure in which wetland functions are evaluated and classified into hydrogeomorphic units according to a multi-criteria analysis approach. Wetland-related geographic information system layers derived from Earth observation data (LiDAR, multispectral and radar data) are used in this study for a large-scale functional evaluation. These include maps of a hydrogeomorphic units, ditches, vegetation, annual flood duration, biomass, meadows management, and wetland boundaries. To demonstrate the feasibility of this approach, a 132 km2 international long-term ecological research site located in the west of France was assessed. Four wetland functions were evaluated: flood peak attenuation, low water attenuation, denitrification, and habitat. A spatial distribution map of the individual wetland functions was generated, and the intensity levels of the functions were highlighted. Antagonisms between functions within individual hydrogeomorphic units were also identified. Mapping of hydrological, biogeochemical, and ecological wetland functions over large areas can provide an efficient tool for policy makers and other stakeholders including water authorities, nature conservation agencies, and farmers. Specifically, this tool has the potential to provide a mapping of ecosystem services, conservation management priorities, and possible improvements in water resources management.

  1. Methodology attitude and instruments for structural and functional analysis of the regional development

    Directory of Open Access Journals (Sweden)

    Yelena Dmitriyevna Ignatyeva

    2013-03-01

    Full Text Available A purpose of this paper is the development of regional socioeconomicsystems analysis methodology and analytical instruments. The offered methodology is based on the estimation of regional socioeconomic systems functions and factors of productive forces location and development. The base of this estimation is the analysis of socioeconomic indicators and typological groups of regional systems. The method of this analysis and original instruments of this analysis on the basis of Kohonen's Self-Organizing Maps are proposed. The main stages of the methodology procedure are described. The paper considers execution of this methodology on the example of the Russian regions. Some directions of their socioeconomic development are substantiated

  2. Impact of Plant Functional Types on Coherence Between Precipitation and Soil Moisture: A Wavelet Analysis

    Science.gov (United States)

    Liu, Qi; Hao, Yonghong; Stebler, Elaine; Tanaka, Nobuaki; Zou, Chris B.

    2017-12-01

    Mapping the spatiotemporal patterns of soil moisture within heterogeneous landscapes is important for resource management and for the understanding of hydrological processes. A critical challenge in this mapping is comparing remotely sensed or in situ observations from areas with different vegetation cover but subject to the same precipitation regime. We address this challenge by wavelet analysis of multiyear observations of soil moisture profiles from adjacent areas with contrasting plant functional types (grassland, woodland, and encroached) and precipitation. The analysis reveals the differing soil moisture patterns and dynamics between plant functional types. The coherence at high-frequency periodicities between precipitation and soil moisture generally decreases with depth but this is much more pronounced under woodland compared to grassland. Wavelet analysis provides new insights on soil moisture dynamics across plant functional types and is useful for assessing differences and similarities in landscapes with heterogeneous vegetation cover.

  3. The use of copula functions for predictive analysis of correlations between extreme storm tides

    Science.gov (United States)

    Domino, Krzysztof; Błachowicz, Tomasz; Ciupak, Maurycy

    2014-11-01

    In this paper we present a method used in quantitative description of weakly predictable hydrological, extreme events at inland sea. Investigations for correlations between variations of individual measuring points, employing combined statistical methods, were carried out. As a main tool for this analysis we used a two-dimensional copula function sensitive for correlated extreme effects. Additionally, a new proposed methodology, based on Detrended Fluctuations Analysis (DFA) and Anomalous Diffusion (AD), was used for the prediction of negative and positive auto-correlations and associated optimum choice of copula functions. As a practical example we analysed maximum storm tides data recorded at five spatially separated places at the Baltic Sea. For the analysis we used Gumbel, Clayton, and Frank copula functions and introduced the reversed Clayton copula. The application of our research model is associated with modelling the risk of high storm tides and possible storm flooding.

  4. Functional vs. Traditional Analysis in Biomechanical Gait Data: An Alternative Statistical Approach

    Science.gov (United States)

    Seeley, Matthew K.; Francom, Devin; Reese, C. Shane; Hopkins, J. Ty

    2017-01-01

    Abstract In human motion studies, discrete points such as peak or average kinematic values are commonly selected to test hypotheses. The purpose of this study was to describe a functional data analysis and describe the advantages of using functional data analyses when compared with a traditional analysis of variance (ANOVA) approach. Nineteen healthy participants (age: 22 ± 2 yrs, body height: 1.7 ± 0.1 m, body mass: 73 ± 16 kg) walked under two different conditions: control and pain+effusion. Pain+effusion was induced by injection of sterile saline into the joint capsule and hypertonic saline into the infrapatellar fat pad. Sagittal-plane ankle, knee, and hip joint kinematics were recorded and compared following injections using 2×2 mixed model ANOVAs and FANOVAs. The results of ANOVAs detected a condition × time interaction for the peak ankle (F1,18 = 8.56, p = 0.01) and hip joint angle (F1,18 = 5.77, p = 0.03), but did not for the knee joint angle (F1,18 = 0.36, p = 0.56). The functional data analysis, however, found several differences at initial contact (ankle and knee joint), in the mid-stance (each joint) and at toe off (ankle). Although a traditional ANOVA is often appropriate for discrete or summary data, in biomechanical applications, the functional data analysis could be a beneficial alternative. When using the functional data analysis approach, a researcher can (1) evaluate the entire data as a function, and (2) detect the location and magnitude of differences within the evaluated function. PMID:29339984

  5. Large-scale genome-wide analysis identifies genetic variants associated with cardiac structure and function

    Science.gov (United States)

    Wild, Philipp S.; Felix, Janine F.; Schillert, Arne; Chen, Ming-Huei; Leening, Maarten J.G.; Völker, Uwe; Großmann, Vera; Brody, Jennifer A.; Irvin, Marguerite R.; Shah, Sanjiv J.; Pramana, Setia; Lieb, Wolfgang; Schmidt, Reinhold; Stanton, Alice V.; Malzahn, Dörthe; Lyytikäinen, Leo-Pekka; Tiller, Daniel; Smith, J. Gustav; Di Tullio, Marco R.; Musani, Solomon K.; Morrison, Alanna C.; Pers, Tune H.; Morley, Michael; Kleber, Marcus E.; Aragam, Jayashri; Bis, Joshua C.; Bisping, Egbert; Broeckel, Ulrich; Cheng, Susan; Deckers, Jaap W.; Del Greco M, Fabiola; Edelmann, Frank; Fornage, Myriam; Franke, Lude; Friedrich, Nele; Harris, Tamara B.; Hofer, Edith; Hofman, Albert; Huang, Jie; Hughes, Alun D.; Kähönen, Mika; investigators, KNHI; Kruppa, Jochen; Lackner, Karl J.; Lannfelt, Lars; Laskowski, Rafael; Launer, Lenore J.; Lindgren, Cecilia M.; Loley, Christina; Mayet, Jamil; Medenwald, Daniel; Morris, Andrew P.; Müller, Christian; Müller-Nurasyid, Martina; Nappo, Stefania; Nilsson, Peter M.; Nuding, Sebastian; Nutile, Teresa; Peters, Annette; Pfeufer, Arne; Pietzner, Diana; Pramstaller, Peter P.; Raitakari, Olli T.; Rice, Kenneth M.; Rotter, Jerome I.; Ruohonen, Saku T.; Sacco, Ralph L.; Samdarshi, Tandaw E.; Sharp, Andrew S.P.; Shields, Denis C.; Sorice, Rossella; Sotoodehnia, Nona; Stricker, Bruno H.; Surendran, Praveen; Töglhofer, Anna M.; Uitterlinden, André G.; Völzke, Henry; Ziegler, Andreas; Münzel, Thomas; März, Winfried; Cappola, Thomas P.; Hirschhorn, Joel N.; Mitchell, Gary F.; Smith, Nicholas L.; Fox, Ervin R.; Dueker, Nicole D.; Jaddoe, Vincent W.V.; Melander, Olle; Lehtimäki, Terho; Ciullo, Marina; Hicks, Andrew A.; Lind, Lars; Gudnason, Vilmundur; Pieske, Burkert; Barron, Anthony J.; Zweiker, Robert; Schunkert, Heribert; Ingelsson, Erik; Liu, Kiang; Arnett, Donna K.; Psaty, Bruce M.; Blankenberg, Stefan; Larson, Martin G.; Felix, Stephan B.; Franco, Oscar H.; Zeller, Tanja; Vasan, Ramachandran S.; Dörr, Marcus

    2017-01-01

    BACKGROUND. Understanding the genetic architecture of cardiac structure and function may help to prevent and treat heart disease. This investigation sought to identify common genetic variations associated with inter-individual variability in cardiac structure and function. METHODS. A GWAS meta-analysis of echocardiographic traits was performed, including 46,533 individuals from 30 studies (EchoGen consortium). The analysis included 16 traits of left ventricular (LV) structure, and systolic and diastolic function. RESULTS. The discovery analysis included 21 cohorts for structural and systolic function traits (n = 32,212) and 17 cohorts for diastolic function traits (n = 21,852). Replication was performed in 5 cohorts (n = 14,321) and 6 cohorts (n = 16,308), respectively. Besides 5 previously reported loci, the combined meta-analysis identified 10 additional genome-wide significant SNPs: rs12541595 near MTSS1 and rs10774625 in ATXN2 for LV end-diastolic internal dimension; rs806322 near KCNRG, rs4765663 in CACNA1C, rs6702619 near PALMD, rs7127129 in TMEM16A, rs11207426 near FGGY, rs17608766 in GOSR2, and rs17696696 in CFDP1 for aortic root diameter; and rs12440869 in IQCH for Doppler transmitral A-wave peak velocity. Findings were in part validated in other cohorts and in GWAS of related disease traits. The genetic loci showed associations with putative signaling pathways, and with gene expression in whole blood, monocytes, and myocardial tissue. CONCLUSION. The additional genetic loci identified in this large meta-analysis of cardiac structure and function provide insights into the underlying genetic architecture of cardiac structure and warrant follow-up in future functional studies. FUNDING. For detailed information per study, see Acknowledgments. PMID:28394258

  6. Elucidating a normal function of huntingtin by functional and microarray analysis of huntingtin-null mouse embryonic fibroblasts

    Directory of Open Access Journals (Sweden)

    Zeitlin Scott

    2008-04-01

    Full Text Available Abstract Background The polyglutamine expansion in huntingtin (Htt protein is a cause of Huntington's disease (HD. Htt is an essential gene as deletion of the mouse Htt gene homolog (Hdh is embryonic lethal in mice. Therefore, in addition to elucidating the mechanisms responsible for polyQ-mediated pathology, it is also important to understand the normal function of Htt protein for both basic biology and for HD. Results To systematically search for a mouse Htt function, we took advantage of the Hdh +/- and Hdh-floxed mice and generated four mouse embryonic fibroblast (MEF cells lines which contain a single copy of the Hdh gene (Hdh-HET and four MEF lines in which the Hdh gene was deleted (Hdh-KO. The function of Htt in calcium (Ca2+ signaling was analyzed in Ca2+ imaging experiments with generated cell lines. We found that the cytoplasmic Ca2+ spikes resulting from the activation of inositol 1,4,5-trisphosphate receptor (InsP3R and the ensuing mitochondrial Ca2+ signals were suppressed in the Hdh-KO cells when compared to Hdh-HET cells. Furthermore, in experiments with permeabilized cells we found that the InsP3-sensitivity of Ca2+ mobilization from endoplasmic reticulum was reduced in Hdh-KO cells. These results indicated that Htt plays an important role in modulating InsP3R-mediated Ca2+ signaling. To further evaluate function of Htt, we performed genome-wide transcription profiling of generated Hdh-HET and Hdh-KO cells by microarray. Our results revealed that 106 unique transcripts were downregulated by more than two-fold with p Hdh-KO cells when compared to Hdh-HET cells. The microarray results were confirmed by quantitative real-time PCR for a number of affected transcripts. Several signaling pathways affected by Hdh gene deletion were identified from annotation of the microarray results. Conclusion Functional analysis of generated Htt-null MEF cells revealed that Htt plays a direct role in Ca2+ signaling by modulating InsP3R sensitivity to

  7. Getting full control of canonical correlation analysis with the AutoBiplot.CCA function

    Science.gov (United States)

    Alves, M. Rui

    2016-06-01

    Function AutoBiplot.CCA was built in R language. Given two multivariate data sets, this function carries out a conventional canonical correlation analysis, followed by the automatic production of predictive biplots based on the accuracy of readings as assessed by a mean standard predictive error and a user defined tolerance value. As the user's intervention is mainly restricted to the choice of the magnitude of the t.axis value, common misinterpretations, overestimations and adjustments between outputs and personal beliefs are avoided.

  8. Analyzing Brain Functions by Subject Classification of Functional Near-Infrared Spectroscopy Data Using Convolutional Neural Networks Analysis

    Directory of Open Access Journals (Sweden)

    Satoru Hiwa

    2016-01-01

    Full Text Available Functional near-infrared spectroscopy (fNIRS is suitable for noninvasive mapping of relative changes in regional cortical activity but is limited for quantitative comparisons among cortical sites, subjects, and populations. We have developed a convolutional neural network (CNN analysis method that learns feature vectors for accurate identification of group differences in fNIRS responses. In this study, subject gender was classified using CNN analysis of fNIRS data. fNIRS data were acquired from male and female subjects during a visual number memory task performed in a white noise environment because previous studies had revealed that the pattern of cortical blood flow during the task differed between males and females. A learned classifier accurately distinguished males from females based on distinct fNIRS signals from regions of interest (ROI including the inferior frontal gyrus and premotor areas that were identified by the learning algorithm. These cortical regions are associated with memory storage, attention, and task motor response. The accuracy of the classifier suggests stable gender-based differences in cerebral blood flow during this task. The proposed CNN analysis method can objectively identify ROIs using fNIRS time series data for machine learning to distinguish features between groups.

  9. Approximate Green's function representations for the analysis of SAW and leaky wave devices.

    Science.gov (United States)

    Peach, Robert C

    2009-10-01

    The Green's function or boundary element method (BEM) is the preferred technique for rigorous SAW device analysis. However, because of its computational cost, its principal application is the analysis of mode propagation in periodic structures to determine parameters that can then be used in simplified coupling of modes (COM) or P-matrix models. In this paper, rigorous representations are derived that express the Green's function in terms of a continuous superposition of modes. The derivations include detailed analysis of the Green's function properties as a function of both frequency and wavenumber, and representations are obtained for both the slowness and spatial domains. Approximate forms are then generated by replacing the continuous mode superposition by a discrete one. The Green's function can be approximated to any required degree of accuracy, and the resulting approximations are applicable to any type of wave on any type of substrate. The long-range spatial components in the approximate forms are represented by exponential terms. The separable properties of these terms allow this class of approximation to be applied to general SAW and leaky wave device analysis in such a way that the computational effort increases only linearly with device size.

  10. Spherical Harmonic Analysis of Particle Velocity Distribution Function: Comparison of Moments and Anisotropies using Cluster Data

    Science.gov (United States)

    Gurgiolo, Chris; Vinas, Adolfo F.

    2009-01-01

    This paper presents a spherical harmonic analysis of the plasma velocity distribution function using high-angular, energy, and time resolution Cluster data obtained from the PEACE spectrometer instrument to demonstrate how this analysis models the particle distribution function and its moments and anisotropies. The results show that spherical harmonic analysis produced a robust physical representation model of the velocity distribution function, resolving the main features of the measured distributions. From the spherical harmonic analysis, a minimum set of nine spectral coefficients was obtained from which the moment (up to the heat flux), anisotropy, and asymmetry calculations of the velocity distribution function were obtained. The spherical harmonic method provides a potentially effective "compression" technique that can be easily carried out onboard a spacecraft to determine the moments and anisotropies of the particle velocity distribution function for any species. These calculations were implemented using three different approaches, namely, the standard traditional integration, the spherical harmonic (SPH) spectral coefficients integration, and the singular value decomposition (SVD) on the spherical harmonic methods. A comparison among the various methods shows that both SPH and SVD approaches provide remarkable agreement with the standard moment integration method.

  11. Combining multiobjective optimization and cluster analysis to study vocal fold functional morphology.

    Science.gov (United States)

    Palaparthi, Anil; Riede, Tobias; Titze, Ingo R

    2014-07-01

    Morphological design and the relationship between form and function have great influence on the functionality of a biological organ. However, the simultaneous investigation of morphological diversity and function is difficult in complex natural systems. We have developed a multiobjective optimization (MOO) approach in association with cluster analysis to study the form-function relation in vocal folds. An evolutionary algorithm (NSGA-II) was used to integrate MOO with an existing finite element model of the laryngeal sound source. Vocal fold morphology parameters served as decision variables and acoustic requirements (fundamental frequency, sound pressure level) as objective functions. A two-layer and a three-layer vocal fold configuration were explored to produce the targeted acoustic requirements. The mutation and crossover parameters of the NSGA-II algorithm were chosen to maximize a hypervolume indicator. The results were expressed using cluster analysis and were validated against a brute force method. Results from the MOO and the brute force approaches were comparable. The MOO approach demonstrated greater resolution in the exploration of the morphological space. In association with cluster analysis, MOO can efficiently explore vocal fold functional morphology.

  12. piggyBac is an effective tool for functional analysis of the Plasmodium falciparum genome

    Directory of Open Access Journals (Sweden)

    Kissinger Jessica C

    2009-05-01

    Full Text Available Abstract Background Much of the Plasmodium falciparum genome encodes hypothetical proteins with limited homology to other organisms. A lack of robust tools for genetic manipulation of the parasite limits functional analysis of these hypothetical proteins and other aspects of the Plasmodium genome. Transposon mutagenesis has been used widely to identify gene functions in many organisms and would be extremely valuable for functional analysis of the Plasmodium genome. Results In this study, we investigated the lepidopteran transposon, piggyBac, as a molecular genetic tool for functional characterization of the Plasmodium falciparum genome. Through multiple transfections, we generated 177 unique P. falciparum mutant clones with mostly single piggyBac insertions in their genomes. Analysis of piggyBac insertion sites revealed random insertions into the P. falciparum genome, in regards to gene expression in parasite life cycle stages and functional categories. We further explored the possibility of forward genetic studies in P. falciparum with a phenotypic screen for attenuated growth, which identified several parasite genes and pathways critical for intra-erythrocytic development. Conclusion Our results clearly demonstrate that piggyBac is a novel, indispensable tool for forward functional genomics in P. falciparum that will help better understand parasite biology and accelerate drug and vaccine development.

  13. Data preparation for functional data analysis of PM10 in Peninsular Malaysia

    Science.gov (United States)

    Shaadan, Norshahida; Jemain, Abdul Aziz; Deni, Sayang Mohd

    2014-07-01

    The use of curves or functional data in the study analysis is increasingly gaining momentum in the various fields of research. The statistical method to analyze such data is known as functional data analysis (FDA). The first step in FDA is to convert the observed data points which are repeatedly recorded over a period of time or space into either a rough (raw) or smooth curve. In the case of the smooth curve, basis functions expansion is one of the methods used for the data conversion. The data can be converted into a smooth curve either by using the regression smoothing or roughness penalty smoothing approach. By using the regression smoothing approach, the degree of curve's smoothness is very dependent on k number of basis functions; meanwhile for the roughness penalty approach, the smoothness is dependent on a roughness coefficient given by parameter λ Based on previous studies, researchers often used the rather time-consuming trial and error or cross validation method to estimate the appropriate number of basis functions. Thus, this paper proposes a statistical procedure to construct functional data or curves for the hourly and daily recorded data. The Bayesian Information Criteria is used to determine the number of basis functions while the Generalized Cross Validation criteria is used to identify the parameter λ The proposed procedure is then applied on a ten year (2001-2010) period of PM10 data from 30 air quality monitoring stations that are located in Peninsular Malaysia. It was found that the number of basis functions required for the construction of the PM10 daily curve in Peninsular Malaysia was in the interval of between 14 and 20 with an average value of 17; the first percentile is 15 and the third percentile is 19. Meanwhile the initial value of the roughness coefficient was in the interval of between 10-5 and 10-7 and the mode was 10-6. An example of the functional descriptive analysis is also shown.

  14. Functional connectivity between brain areas estimated by analysis of gamma waves.

    Science.gov (United States)

    Kheiri, Farshad; Bragin, Anatol; Engel, Jerome

    2013-04-15

    The goal of this study is to investigate functional connectivity between different brain regions by analyzing the temporal relationship of the maxima of gamma waves recorded in multiple brain areas. Local field potentials were recorded from motor cortex, hippocampus, entorhinal cortex and piriform cortex of rats. Gamma activity was filtered and separated into two bands; high (65-90Hz) and low (30-55Hz) gamma. Maxima for gamma activity waves were detected and functional connectivity between different brain regions was determined using Shannon entropy for perievent histograms for each pair channels. Significant Shannon entropy values were reported as connectivity factors. We defined a connectivity matrix based the connectivity factors between different regions. We found that maxima of low and high frequency gamma occur in strong temporal relationship between some brain areas, indicating the existence of functional connections between these areas. The spatial pattern of functional connections between brain areas was different for slow wave sleep and waking states. However for each behavioral state in the same animal the pattern of functional connections was stable over time within 30min of continuous analysis and over a 5 day period. With the same electrode montage the pattern of functional connectivity varied from one subject to another. Analysis of the temporal relationship of maxima of gamma waves between various brain areas could be a useful tool for investigation of functional connections between these brain areas. This approach could be applied for analysis of functional alterations occurring in these connections during different behavioral tasks and during processes related to learning and memory. The specificity in the connectivity pattern from one subject to another can be explained by the existence of unique functional networks for each subject. Copyright © 2013 Elsevier B.V. All rights reserved.

  15. Parental reflective functioning: analysis and promotion of the concept for paediatric nursing.

    Science.gov (United States)

    Ordway, Monica R; Sadler, Lois S; Dixon, Jane; Slade, Arietta

    2014-12-01

    To identify the definitional elements of parental reflective functioning and develop a framework for nurses to apply this concept in their clinical work with families. In recent years, researchers have concluded that parental reflective functioning is a key mechanism in the development of child attachment security leading to lifelong mental and physical health benefits. Despite its clinical relevance, little has been published in the nursing literature on this concept. Concept analysis. The Walker and Avant (2011, Strategies for theory construction in nursing. Prentice Hall, Upper Saddle River, NJ) method of concept analysis and the Whittemore and Knafl (Journal of Advanced Nursing, 52, 2005, 546) method of integrative review were used. A search of the literature published from 1989-2013 was conducted using edited texts and online databases - Scopus, CINAHL, PubMed and PsychInfo. Among the 85 sources, 31 empirical studies, 17 book chapters, 32 review papers and five case studies were identified concerning parental reflective functioning. The concept of reflective functioning, defined as the capacity to envision the mental states of self and other, was first described in 1989 by Fonagy. Slade (Attachment and Human Development, 7, 2005, 269) expanded the concept specifically for parents (i.e. parental reflective functioning). Results of this concept analysis describe seven defining attributes and five antecedent conditions. Consequences of parental reflective functioning are related to a child's attachment early in life and behaviour later in life. A model case is provided to contextualise the concept. To date, there are three measures for parental reflective functioning. While parental reflective functioning has been predominately featured in psychology and parenting interventions, the potential consequences of secure attachment and longer-term children's behavioural outcomes suggest that the concept has global implications for paediatric nurses and primary

  16. Analysis of wall-function approaches using two-equation turbulence models

    Energy Technology Data Exchange (ETDEWEB)

    Albets-Chico, X.; Perez-Segarra, C.D.; Oliva, A. [Centre Tecnologic de Transferencia de Calor, Universitat Politecnica de Catalunya (UPC), ETSEIAT, C/ Colom, 11, 08222 Terrassa (Barcelona) (Spain); Bredberg, J. [Multi-physics/CFD Epsilon, HighTech AB Lindholmspiren 9, SE-41756 Gothenburg (Sweden)

    2008-09-15

    This paper focuses the attention on the drawbacks and abilities of wall-function techniques through an analysis of well-known wall-functions from literature. Besides this, some deeper analysis of these tools by means of physical and numerical considerations are carried out in order to improve their limitations when they are applied to predict heat transfer and fluid flow. Accuracy, grid-sensitivity, numerical behaviour and verification of numerical simulations are key aspects in this paper. The main purpose is to obtain tools which are able to predict both fluid flow and heat transfer with low CPU time consumption, reduced grid-sensitivity and a relatively good accuracy. (author)

  17. Uncertainty analysis of signal deconvolution using a measured instrument response function

    Science.gov (United States)

    Hartouni, E. P.; Beeman, B.; Caggiano, J. A.; Cerjan, C.; Eckart, M. J.; Grim, G. P.; Hatarik, R.; Moore, A. S.; Munro, D. H.; Phillips, T.; Sayre, D. B.

    2016-11-01

    A common analysis procedure minimizes the ln-likelihood that a set of experimental observables matches a parameterized model of the observation. The model includes a description of the underlying physical process as well as the instrument response function (IRF). In the case investigated here, the National Ignition Facility (NIF) neutron time-of-flight (nTOF) spectrometers, the IRF is constructed from measurements and models. IRF measurements have a finite precision that can make significant contributions to determine the uncertainty estimate of the physical model's parameters. We apply a Bayesian analysis to properly account for IRF uncertainties in calculating the ln-likelihood function used to find the optimum physical parameters.

  18. Mendelian randomization analysis of a time-varying exposure for binary disease outcomes using functional data analysis methods.

    Science.gov (United States)

    Cao, Ying; Rajan, Suja S; Wei, Peng

    2016-12-01

    A Mendelian randomization (MR) analysis is performed to analyze the causal effect of an exposure variable on a disease outcome in observational studies, by using genetic variants that affect the disease outcome only through the exposure variable. This method has recently gained popularity among epidemiologists given the success of genetic association studies. Many exposure variables of interest in epidemiological studies are time varying, for example, body mass index (BMI). Although longitudinal data have been collected in many cohort studies, current MR studies only use one measurement of a time-varying exposure variable, which cannot adequately capture the long-term time-varying information. We propose using the functional principal component analysis method to recover the underlying individual trajectory of the time-varying exposure from the sparsely and irregularly observed longitudinal data, and then conduct MR analysis using the recovered curves. We further propose two MR analysis methods. The first assumes a cumulative effect of the time-varying exposure variable on the disease risk, while the second assumes a time-varying genetic effect and employs functional regression models. We focus on statistical testing for a causal effect. Our simulation studies mimicking the real data show that the proposed functional data analysis based methods incorporating longitudinal data have substantial power gains compared to standard MR analysis using only one measurement. We used the Framingham Heart Study data to demonstrate the promising performance of the new methods as well as inconsistent results produced by the standard MR analysis that relies on a single measurement of the exposure at some arbitrary time point. © 2016 WILEY PERIODICALS, INC.

  19. Hybrid Bernstein Block-Pulse Functions Method for Second Kind Integral Equations with Convergence Analysis

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    Mohsen Alipour

    2014-01-01

    Full Text Available We introduce a new combination of Bernstein polynomials (BPs and Block-Pulse functions (BPFs on the interval [0, 1]. These functions are suitable for finding an approximate solution of the second kind integral equation. We call this method Hybrid Bernstein Block-Pulse Functions Method (HBBPFM. This method is very simple such that an integral equation is reduced to a system of linear equations. On the other hand, convergence analysis for this method is discussed. The method is computationally very simple and attractive so that numerical examples illustrate the efficiency and accuracy of this method.

  20. An Analysis of the Applicability of Slepian Function in Analyzing Lunar Local Gravity Field

    OpenAIRE

    SUN Xuemei; LI Fei; YAN Jianguo; HAO Weifeng

    2015-01-01

    Based on a detailed analysis of the Slepian function, the advantages and disadvantages of the application of the Slepian function in computing lunar local gravity model, local power spectrum combined with the CEGM02 model and local admittance and correlation based on CEGM02, SGM150j, LP150Q and GRAIL660 were analyzed in this paper. It turns out that the local orthogonal Slepian function shows obvious advantages in modeling lunar local gravity field. In the application of power spectrum, the m...