Differentiation among isolates of prunus necrotic ringspot virus by transcript conformation polymorphism.

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Rosner, A; Maslenin, L; Spiegel, S

1998-09-01

A method based on differences in electrophoretic mobility of RNA transcripts made from polymerase chain reaction (PCR) products was used for differentiation among virus isolates. A T7 RNA polymerase promoter was attached to amplified prunus necrotic ringspot virus (PNRSV) sequences by PCR. The PCR products then served as a template for transcription. Single-stranded transcripts originated from different PNRSV isolates varied in electrophoretic mobility in polyacrylamide gels, presumably because of transcript conformation polymorphism (TCP). This procedure was applied for the differentiation of PNRSV isolates.

Whole-Genome Characterization of Prunus necrotic ringspot virus Infecting Sweet Cherry in China.

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Wang, Jiawei; Zhai, Ying; Zhu, Dongzi; Liu, Weizhen; Pappu, Hanu R; Liu, Qingzhong

2018-03-01

Prunus necrotic ringspot virus (PNRSV) causes yield loss in most cultivated stone fruits, including sweet cherry. Using a small RNA deep-sequencing approach combined with end-genome sequence cloning, we identified the complete genomes of all three PNRSV strands from PNRSV-infected sweet cherry trees and compared them with those of two previously reported isolates. Copyright © 2018 Wang et al.

Evolutionary relationships in the ilarviruses: nucleotide sequence of prunus necrotic ringspot virus RNA 3.

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Sánchez-Navarro, J A; Pallás, V

1997-01-01

The complete nucleotide sequence of an isolate of prunus necrotic ringspot virus (PNRSV) RNA 3 has been determined. Elucidation of the amino acid sequence of the proteins encoded by the two large open reading frames (ORFs) allowed us to carry out comparative and phylogenetic studies on the movement (MP) and coat (CP) proteins in the ilarvirus group. Amino acid sequence comparison of the MP revealed a highly conserved basic sequence motif with an amphipathic alpha-helical structure preceding the conserved motif of the '30K superfamily' proposed by Mushegian and Koonin [26] for MP's. Within this '30K' motif a strictly conserved transmembrane domain is present in all ilarviruses sequenced so far. At the amino-terminal end, prune dwarf virus (PDV) has an extension not present in other ilarviruses but which is observed in all bromo- and cucumoviruses, suggesting a common ancestor or a recombinational event in the Bromoviridae family. Examination of the N-terminus of the CP's of all ilarviruses revealed a highly basic region, part of which resembles the Arg-rich motif that has been characterized in the RNA-binding protein family. This motif has also been found in the other members of the Bromoviridae family, suggesting its involvement in a structural function. Furthermore this region is required for infectivity in ilarviruses. The similarities found in this Arg-rich motif are discussed in terms of this process known as genome activation. Finally, phylogenetic analysis of both the MP and CP proteins revealed a higher relationship of A1MV to PNRSV, apple mosaic virus (ApMV) and PDV than any other member of the ilarvirus group. In that sense, A1MV should be considered as a true ilarvirus instead of forming a distinct group of viruses.

Incidence of Prunus necrotic ringspot virus in Jordan

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N. Salem

2003-12-01

Full Text Available A survey of Prunus necrotic ringspot virus (PNRSV incidence in Jordan stone-fruit growing areas was conducted during 2000–2002. A total of 2552 samples were collected from 72 commercial orchards, a mother block, 15 nurseries, and a varietal collection. A total of 208 almond, 451 apricot, 149 cherry, 250 nectarine, 1016 peach, and 478 plum trees were tested individually for PNRSV by the double-antibody sandwich enzyme linked immunosorbent assay (DAS-ELISA. Around 15% of tested samples were infected with PNRSV. The virus incidence in almond, nectarine, plum, peach, cherry, and apricot was 24, 16, 16, 14, 13, and 10% of tested trees respectively. The level of viral infection was highest in the mother block (19%, and lowest in the samples from the nurseries (10%.

Rapid Detection of Prunus Necrotic Ringspot Virus by Reverse Transcription-cross-priming Amplification Coupled with Nucleic Acid Test Strip Cassette.

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Huo, Ya-Yun; Li, Gui-Fen; Qiu, Yan-Hong; Li, Wei-Min; Zhang, Yong-Jiang

2017-11-23

Prunus necrotic ringspot virus (PNRSV) is one of the most devastating viruses to Prunus spp. In this study, we developed a diagnostic system RT-CPA-NATSC, wherein reverse transcription-cross-priming amplification (RT-CPA) is coupled with nucleic acid test strip cassette (NATSC), a vertical flow (VF) visualization, for PNRSV detection. The RT-CPA-NATSC assay targets the encoding gene of the PNRSV coat protein with a limit of detection of 72 copies per reaction and no cross-reaction with the known Prunus pathogenic viruses and viroids, demonstrating high sensitivity and specificity. The reaction is performed on 60 °C and can be completed less than 90 min with the prepared template RNA. Field sample test confirmed the reliability of RT-CPA-NATSC, indicating the potential application of this simple and rapid detection method in routine test of PNRSV.

Prunus necrotic ringspot ilarvirus: nucleotide sequence of RNA3 and the relationship to other ilarviruses based on coat protein comparison.

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Guo, D; Maiss, E; Adam, G; Casper, R

1995-05-01

The RNA3 of prunus necrotic ringspot ilarvirus (PNRSV) has been cloned and its entire sequence determined. The RNA3 consists of 1943 nucleotides (nt) and possesses two large open reading frames (ORFs) separated by an intergenic region of 74 nt. The 5' proximal ORF is 855 nt in length and codes for a protein of molecular mass 31.4 kDa which has homologies with the putative movement protein of other members of the Bromoviridae. The 3' proximal ORF of 675 nt is the cistron for the coat protein (CP) and has a predicted molecular mass of 24.9 kDa. The sequence of the 3' non-coding region (NCR) of PNRSV RNA3 showed a high degree of similarity with those of tobacco streak virus (TSV), prune dwarf virus (PDV), apple mosaic virus (ApMV) and also alfalfa mosaic virus (AIMV). In addition it contained potential stem-loop structures with interspersed AUGC motifs characteristic for ilar- and alfamoviruses. This conserved primary and secondary structure in all 3' NCRs may be responsible for the interaction with homologous and heterologous CPs and subsequent activation of genome replication. The CP gene of an ApMV isolate (ApMV-G) of 657 nt has also been cloned and sequenced. Although ApMV and PNRSV have a distant serological relationship, the deduced amino acid sequences of their CPs have an identity of only 51.8%. The N termini of PNRSV and ApMV CPs have in common a zinc-finger motif and the potential to form an amphipathic helix.

In vitro evidence for RNA binding properties of the coat protein of prunus necrotic ringspot ilarvirus and their comparison to related and unrelated viruses.

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Pallás, V; Sánchez-Navarro, J A; Díez, J

1999-01-01

The RNA binding properties of the prunus necrotic ringspot virus (PNRSV) coat protein (CP) were demonstrated by northwestern and dot-blot analyses. The capability to bind PNRSV RNA 4 was compared with viruses representing three different interactions prevailing in the assembly and architecture of virions. The results showed that cucumber mosaic virus (CMV) and PNRSV CPs, which stabilise their virions mainly through RNA-protein interactions bound PNRSV RNA 4 even at very high salt concentrations. The CP of cherry leaf roll nepovirus, whose virions are predominantly stabilised by protein-protein interactions did not bind even at the lowest salt concentration tested. Finally the CP of carnation mottle carmovirus, that has an intermediate position in which both RNA-protein and protein-protein interactions are equally important showed a salt-dependent RNA binding.

Rootstock-to-scion transfer of transgene-derived small interfering RNAs and their effect on virus resistance in nontransgenic sweet cherry.

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Zhao, Dongyan; Song, Guo-qing

2014-12-01

Small interfering RNAs (siRNAs) are silencing signals in plants. Virus-resistant transgenic rootstocks developed through siRNA-mediated gene silencing may enhance virus resistance of nontransgenic scions via siRNAs transported from the transgenic rootstocks. However, convincing evidence of rootstock-to-scion movement of siRNAs of exogenous genes in woody plants is still lacking. To determine whether exogenous siRNAs can be transferred, nontransgenic sweet cherry (scions) was grafted on transgenic cherry rootstocks (TRs), which was transformed with an RNA interference (RNAi) vector expressing short hairpin RNAs of the genomic RNA3 of Prunus necrotic ringspot virus (PNRSV-hpRNA). Small RNA sequencing was conducted using bud tissues of TRs and those of grafted (rootstock/scion) trees, locating at about 1.2 m above the graft unions. Comparison of the siRNA profiles revealed that the PNRSV-hpRNA was efficient in producing siRNAs and eliminating PNRSV in the TRs. Furthermore, our study confirmed, for the first time, the long-distance (1.2 m) transfer of PNRSV-hpRNA-derived siRNAs from the transgenic rootstock to the nontransgenic scion in woody plants. Inoculation of nontransgenic scions with PNRSV revealed that the transferred siRNAs enhanced PNRSV resistance of the scions grafted on the TRs. Collectively, these findings provide the foundation for 'using transgenic rootstocks to produce products of nontransgenic scions in fruit trees'. © 2014 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

RNA-binding properties and mapping of the RNA-binding domain from the movement protein of Prunus necrotic ringspot virus.

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Herranz, M Carmen; Pallás, Vicente

2004-03-01

The movement protein (MP) of Prunus necrotic ringspot virus (PNRSV) is involved in intercellular virus transport. In this study, putative RNA-binding properties of the PNRSV MP were studied. The PNRSV MP was produced in Escherichia coli using an expression vector. Electrophoretic mobility shift assays (EMSAs) using DIG-labelled riboprobes demonstrated that PNRSV MP bound ssRNA cooperatively without sequence specificity. Two different ribonucleoprotein complexes were found to be formed depending on the molar MP : PNRSV RNA ratio. The different responses of the complexes to urea treatment strongly suggested that they have different structural properties. Deletion mutagenesis followed by Northwestern analysis allowed location of a nucleic acid binding domain to aa 56-88. This 33 aa RNA-binding motif is the smallest region delineated among members of the family Bromoviridae for which RNA-binding properties have been demonstrated. This domain is highly conserved within all phylogenetic subgroups previously described for PNRSV isolates. Interestingly, the RNA-binding domain described here and the one described for Alfamovirus are located at the N terminus of their corresponding MPs, whereas similar domains previously characterized in members of the genera Bromovirus and Cucumovirus are present at the C terminus, strongly reflecting their corresponding phylogenetic relationships. The evolutionary implications of this observation are discussed.

Seasonal variation of Prunus necrotic ringspot virus concentration in almond, peach, and plum cultivars

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N. Salem

2003-08-01

Full Text Available Levels of Prunus necrotic ringspot virus (PNRSV infection in almond, peach, and plum cultivars over the course of an entire year were determined by testing different plant parts of naturally infected trees, using the double antibody sandwich-enzyme linked immunosorbent assay (DAS-ELISA. The data showed that spring was the best time of year for PNRSV detection in flowers, active growing buds, and young leaves. PNRSV detection was less reliable during the summer months. Young leaves of all cultivars were the most reliable source for distinguishing between healthy and infected plants, while flowers and buds yielded high values in some cultivars but not in others. Seasonal fluctuations in virus concentration did not follow the same pattern in all cultivars. It is therefore impossible to distinguish between infected and healthy trees on the basis of one single sampling time for all cultivars.

Oxidative stress induction by Prunus necrotic ringspot virus infection in apricot seeds.

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Amari, Khalid; Díaz-Vivancos, Pedro; Pallás, Vincente; Sánchez-Pina, María Amelia; Hernández, José Antonio

2007-10-01

Prunus necrotic ringspot rvirus (PNRSV) was able to invade the immature apricot seed including the embryo. The amount of virus was very high inside the embryo compared with that present in the cotyledons. PNRSV infection produced an oxidative stress in apricot seeds as indicated by the increase in lipid peroxidation, measured as thiobarbituric acid-reactive substances. This lipid peroxidation increase was parallelled with an imbalance in the seed antioxidant enzymes. A significant decrease in the ascorbate-GSH cycle enzymes as well as in peroxidase (POX) activity took place in infected seeds, suggesting a low capability to eliminate H2O2. No changes in superoxide dismutase (SOD) or catalase activity were observed. A significant decrease in polyphenoloxidase (PPO) activity was also observed. Native PAGE revealed the presence of three different SOD activity bands in apricot seeds: a Mn-containing SOD and two CuZn-containing SODs. Only an isozyme with catalase, glutathione reductase (GR) or PPO activity was detected in both healthy and infected apricot seeds. Regarding POX staining, three bands with POX activity were detected in native gels in both healthy and infected seeds. The gel results emphasise that the drop detected in POX, GR and PPO activities in PNRSV-infected apricot seeds by kinetic analyses was also evident from the results obtained by native PAGE. The oxidative stress and the imbalance in the antioxidant systems from PNRSV-infected apricot seeds resemble the hypersensitive response observed in some virus-host interactions. This defence mechanism would inactivate PNRSV during seed formation and/or the storage period or even during seed germination. Those results can explain the decrease in seed germination and the low transmission of PNRSV by seeds in apricot trees.

Implication of the C terminus of the Prunus necrotic ringspot virus movement protein in cell-to-cell transport and in its interaction with the coat protein.

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Aparicio, Frederic; Pallás, Vicente; Sánchez-Navarro, Jesús

2010-07-01

The movement protein (MP) of Prunus necrotic ringspot virus (PNRSV) is required for viral transport. Previous analysis with MPs of other members of the family Bromoviridae has shown that the C-terminal part of these MPs plays a critical role in the interaction with the cognate coat protein (CP) and in cell-to-cell transport. Bimolecular fluorescence complementation and overlay analysis confirm an interaction between the C-terminal 38 aa of PNRSV MP and its cognate CP. Mutational analysis of the C-terminal region of the PNRSV MP revealed that its C-terminal 38 aa are dispensable for virus transport, however, the 4 aa preceding the dispensable C terminus are necessary to target the MP to the plasmodesmata and for the functionality of the protein. The capacity of the PNRSV MP to use either a CP-dependent or a CP-independent cell-to-cell transport is discussed.

Molecular characterization of Prunus necrotic ringspot virus isolated from rose in Brazil.

OpenAIRE

FAJARDO, T. V. M.; NASCIMENTO, M. B.; EIRAS, M.; NICKEL, O.; PIO-RIBEIRO, G.

2016-01-01

ABSTRACT: There is no molecular characterization of Brazilian isolates of Prunus necrotic ringspot virus (PNRSV), except for those infecting peach. In this research, the causal agent of rose mosaic was determined and the movement (MP) and coat (CP) protein genes of a PNRSV isolate from rose were molecularly characterized for the first time in Brazil. The nucleotide and deduced amino acid sequences of MP and CP complete genes were aligned and compared with other isolates. Molecular analysis of...

Molecular adaptation within the coat protein-encoding gene of Tunisian almond isolates of Prunus necrotic ringspot virus.

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Boulila, Moncef; Ben Tiba, Sawssen; Jilani, Saoussen

2013-04-01

The sequence alignments of five Tunisian isolates of Prunus necrotic ringspot virus (PNRSV) were searched for evidence of recombination and diversifying selection. Since failing to account for recombination can elevate the false positive error rate in positive selection inference, a genetic algorithm (GARD) was used first and led to the detection of potential recombination events in the coat protein-encoding gene of that virus. The Recco algorithm confirmed these results by identifying, additionally, the potential recombinants. For neutrality testing and evaluation of nucleotide polymorphism in PNRSV CP gene, Tajima's D, and Fu and Li's D and F statistical tests were used. About selection inference, eight algorithms (SLAC, FEL, IFEL, REL, FUBAR, MEME, PARRIS, and GA branch) incorporated in HyPhy package were utilized to assess the selection pressure exerted on the expression of PNRSV capsid. Inferred phylogenies pointed out, in addition to the three classical groups (PE-5, PV-32, and PV-96), the delineation of a fourth cluster having the new proposed designation SW6, and a fifth clade comprising four Tunisian PNRSV isolates which underwent recombination and selective pressure and to which the name Tunisian outgroup was allocated.

Molecular characterization of Prunus necrotic ringspot virus isolated from rose in Brazil

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Thor Vinícius Martins Fajardo

2015-12-01

Full Text Available ABSTRACT: There is no molecular characterization of Brazilian isolates of Prunus necrotic ringspot virus (PNRSV, except for those infecting peach. In this research, the causal agent of rose mosaic was determined and the movement (MP and coat (CP protein genes of a PNRSV isolate from rose were molecularly characterized for the first time in Brazil. The nucleotide and deduced amino acid sequences of MP and CP complete genes were aligned and compared with other isolates. Molecular analysis of the MP and CP nucleotide sequences of a Brazilian PNRSV isolate from rose and others from this same host showed highest identities of 96.7% and 98.6%, respectively, and Rose-Br isolate was classified in PV32 group.

Pruning Shrubs

OpenAIRE

French, Sue (Sue C.); Appleton, Bonnie Lee, 1948-2012

2009-01-01

Understanding the "natural habit" or "shape" of shrubs will help you determine how to prune them. This publication explores how and when to prune, maintenance and rejuvenation pruning, and the growth habit of shrubs.

Enzyme-Linked Immunosorbent Assay Testing of Shoots Grown In Vitro and the Use of Immunocapture-Reverse Transcription-Polymerase Chain Reaction Improve the Detection of Prunus necrotic ringspot virus in Rose.

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Moury, B; Cardin, L; Onesto, J P; Candresse, T; Poupet, A

2000-05-01

We developed and evaluated two different methods to improve the detection of the most prevalent virus of rose in Europe, Prunus necrotic ring-spot virus (PNRSV). Immunocapture-reverse transcription-polymerase chain reaction was estimated to be about 100 times more sensitive than double-antibody sandwich-enzyme-linked immunosorbent assay (DAS-ELISA) and showed an equivalent specificity. Based on the observation that PNRSV multiplies actively in young growing tissues (axillary shoots and cuttings), an in vitro culture method allowing rapid (about 15 days) and homogeneous development of dormant axillary buds with high virus titers was standardized. ELISA tests of these young shoots showed, in some cases, a 10(4) to 10(5) increase in sensitivity in comparison to adjacent leaf tissues from the rose mother plants. Between 21 and 98% (depending on the season) more samples were identified as positive by using ELISA on samples from shoot tips grown in vitro rather than on leaves collected directly from the PNRSV-infected mother plants. This simple method of growing shoot tips in vitro improved the confidence in the detection of PNRSV and eliminated problems in sampling appropriate tissues.

A remarkable synergistic effect at the transcriptomic level in peach fruits doubly infected by prunus necrotic ringspot virus and peach latent mosaic viroid.

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Herranz, Mari Carmen; Niehl, Annette; Rosales, Marlene; Fiore, Nicola; Zamorano, Alan; Granell, Antonio; Pallas, Vicente

2013-05-28

Microarray profiling is a powerful technique to investigate expression changes of large amounts of genes in response to specific environmental conditions. The majority of the studies investigating gene expression changes in virus-infected plants are limited to interactions between a virus and a model host plant, which usually is Arabidopsis thaliana or Nicotiana benthamiana. In the present work, we performed microarray profiling to explore changes in the expression profile of field-grown Prunus persica (peach) originating from Chile upon single and double infection with Prunus necrotic ringspot virus (PNRSV) and Peach latent mosaic viroid (PLMVd), worldwide natural pathogens of peach trees. Upon single PLMVd or PNRSV infection, the number of statistically significant gene expression changes was relatively low. By contrast, doubly-infected fruits presented a high number of differentially regulated genes. Among these, down-regulated genes were prevalent. Functional categorization of the gene expression changes upon double PLMVd and PNRSV infection revealed protein modification and degradation as the functional category with the highest percentage of repressed genes whereas induced genes encoded mainly proteins related to phosphate, C-compound and carbohydrate metabolism and also protein modification. Overrepresentation analysis upon double infection with PLMVd and PNRSV revealed specific functional categories over- and underrepresented among the repressed genes indicating active counter-defense mechanisms of the pathogens during infection. Our results identify a novel synergistic effect of PLMVd and PNRSV on the transcriptome of peach fruits. We demonstrate that mixed infections, which occur frequently in field conditions, result in a more complex transcriptional response than that observed in single infections. Thus, our data demonstrate for the first time that the simultaneous infection of a viroid and a plant virus synergistically affect the host transcriptome in

Sodium sulphite inhibition of potato and cherry polyphenolics in nucleic acid extraction for virus detection by RT-PCR.

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Singh, R P; Nie, X; Singh, M; Coffin, R; Duplessis, P

2002-01-01

Phenolic compounds from plant tissues inhibit reverse transcription-polymerase chain reaction (RT-PCR). Multiple-step protocols using several additives to inhibit polyphenolic compounds during nucleic acid extraction are common, but time consuming and laborious. The current research highlights that the inclusion of 0.65 to 0.70% of sodium sulphite in the extraction buffer minimizes the pigmentation of nucleic acid extracts and improves the RT-PCR detection of Potato virus Y (PVY) and Potato leafroll virus (PLRV) in potato (Solanum tuberosum) tubers and Prune dwarf virus (PDV) and Prunus necrotic ringspot virus (PNRSV) in leaves and bark in the sweet cherry (Prunus avium) tree. Substituting sodium sulphite in the nucleic acid extraction buffer eliminated the use of proteinase K during extraction. Reagents phosphate buffered saline (PBS)-Tween 20 and polyvinylpyrrolidone (PVP) were also no longer required during RT or PCR phase. The resultant nucleic acid extracts were suitable for both duplex and multiplex RT-PCR. This simple and less expensive nucleic acid extraction protocol has proved very effective for potato cv. Russet Norkotah, which contains a high amount of polyphenolics. Comparing commercially available RNA extraction kits (Catrimox and RNeasy), the sodium sulphite based extraction protocol yielded two to three times higher amounts of RNA, while maintaining comparable virus detection by RT-PCR. The sodium sulphite based extraction protocol was equally effective in potato tubers, and in leaves and bark from the cherry tree.

Rapid detection of Prunus necrotic ringspot virus using magnetic nanoparticle-assisted reverse transcription loop-mediated isothermal amplification.

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Zong, Xiaojuan; Wang, Wenwen; Wei, Hairong; Wang, Jiawei; Chen, Xin; Xu, Li; Zhu, Dongzi; Tan, Yue; Liu, Qingzhong

2014-11-01

Prunus necrotic ringspot virus (PNRSV) has seriously reduced the yield of Prunus species worldwide. In this study, a highly efficient and specific two-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) was developed to detect PNRSV. Total RNA was extracted from sweet cherry leaf samples using a commercial kit based on a magnetic nanoparticle technique. Transcripts were used as the templates for the assay. The results of this assay can be detected using agarose gel electrophoresis or by assessing in-tube fluorescence after adding SYBR Green I. The assay is highly specific for PNRSV, and it is more sensitive than reverse-transcription polymerase chain reaction (RT-PCR). Restriction enzyme digestion verified further the reliability of this RT-LAMP assay. To our knowledge, this is the first report of the application of RT-LAMP to PNRSV detection in Prunus species. Copyright © 2014 Elsevier B.V. All rights reserved.

Molecular characterization of two prunus necrotic ringspot virus isolates from Canada.

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Cui, Hongguang; Hong, Ni; Wang, Guoping; Wang, Aiming

2012-05-01

We determined the entire RNA1, 2 and 3 sequences of two prunus necrotic ringspot virus (PNRSV) isolates, Chr3 from cherry and Pch12 from peach, obtained from an orchard in the Niagara Fruit Belt, Canada. The RNA1, 2 and 3 of the two isolates share nucleotide sequence identities of 98.6%, 98.4% and 94.5%, respectively. Their RNA1- and 2-encoded amino acid sequences are about 98% identical to the corresponding sequences of a cherry isolate, CH57, the only other PNRSV isolate with complete RNA1 and 2 sequences available. Phylogenetic analysis of the coat protein and movement protein encoded by RNA3 of Pch12 and Chr3 and published PNRSV isolates indicated that Chr3 belongs to the PV96 group and Pch12 belongs to the PV32 group.

Plant virus cell-to-cell movement is not dependent on the transmembrane disposition of its movement protein.

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Martínez-Gil, Luis; Sánchez-Navarro, Jesús A; Cruz, Antonio; Pallás, Vicente; Pérez-Gil, Jesús; Mingarro, Ismael

2009-06-01

The cell-to-cell transport of plant viruses depends on one or more virus-encoded movement proteins (MPs). Some MPs are integral membrane proteins that interact with the membrane of the endoplasmic reticulum, but a detailed understanding of the interaction between MPs and biological membranes has been lacking. The cell-to-cell movement of the Prunus necrotic ringspot virus (PNRSV) is facilitated by a single MP of the 30K superfamily. Here, using a myriad of biochemical and biophysical approaches, we show that the PNRSV MP contains only one hydrophobic region (HR) that interacts with the membrane interface, as opposed to being a transmembrane protein. We also show that a proline residue located in the middle of the HR constrains the structural conformation of this region at the membrane interface, and its replacement precludes virus movement.

The use of short and long PCR products for improved detection of prunus necrotic ringspot virus in woody plants.

Science.gov (United States)

Rosner, A; Maslenin, L; Spiegel, S

1997-09-01

The reverse transcriptase-polymerase chain reaction (RT-PCR) was used for detection of prunus necrotic ringspot virus (PNRSV) in dormant peach and almond trees by the application of two different pairs of primers yielding a short and a long product, respectively. The relative amount of the short (200 base pair, bp) product was higher than the longer (785 bp) product. PNRSV was detected better in plant tissues with a low virus concentration (e.g. dormant trees) by amplification of the short PCR product, whereas the long product was product was produced at higher virus titers. Simultaneous amplification of both short and long products was demonstrated using a three-primer mixture in a single reaction tube. In this assay, amplification of either PCR product indicated the presence of PNRSV-specific sequences in the plant tissue examined, thus covering a wide range of virus concentrations in a single test. Dilution of the RNA extracted from infected plant material resulted in a steep decline in the amplification of both short and long PCR products. In contrast, serial dilutions of the intermediate cDNA template differentially affected the amplification patterns: the relative amount of the short product increased whereas that of the long product decreased. These results may explain the preferential amplification of the short PCR product observed in samples containing low virus concentrations.

Plant Virus Cell-to-Cell Movement Is Not Dependent on the Transmembrane Disposition of Its Movement Protein▿ †

Science.gov (United States)

Martínez-Gil, Luis; Sánchez-Navarro, Jesús A.; Cruz, Antonio; Pallás, Vicente; Pérez-Gil, Jesús; Mingarro, Ismael

2009-01-01

The cell-to-cell transport of plant viruses depends on one or more virus-encoded movement proteins (MPs). Some MPs are integral membrane proteins that interact with the membrane of the endoplasmic reticulum, but a detailed understanding of the interaction between MPs and biological membranes has been lacking. The cell-to-cell movement of the Prunus necrotic ringspot virus (PNRSV) is facilitated by a single MP of the 30K superfamily. Here, using a myriad of biochemical and biophysical approaches, we show that the PNRSV MP contains only one hydrophobic region (HR) that interacts with the membrane interface, as opposed to being a transmembrane protein. We also show that a proline residue located in the middle of the HR constrains the structural conformation of this region at the membrane interface, and its replacement precludes virus movement. PMID:19321624

Replication of alfalfa mosaic virus RNA 3 with movement and coat protein genes replaced by corresponding genes of Prunus necrotic ringspot ilarvirus.

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Sánchez-Navarro, J A; Reusken, C B; Bol, J F; Pallás, V

1997-12-01

Alfalfa mosaic virus (AMV) and Prunus necrotic ringspot virus (PNRSV) are tripartite positive-strand RNA plant viruses that encode functionally similar translation products. Although the two viruses are phylogenetically closely related, they infect a very different range of natural hosts. The coat protein (CP) gene, the movement protein (MP) gene or both genes in AMV RNA 3 were replaced by the corresponding genes of PNRSV. The chimeric viruses were tested for heterologous encapsidation, replication in protoplasts from plants transformed with AMV replicase genes P1 and P2 (P12 plants) and for cell-to-cell transport in P12 plants. The chimeric viruses exhibited basic competence for encapsidation and replication in P12 protoplasts and for a low level of cell-to-cell movement in P12 plants. The potential involvement of the MP gene in determining host specificity in ilarviruses is discussed.

Simultaneous detection of the three ilarviruses affecting stone fruit trees by nonisotopic molecular hybridization and multiplex reverse-transcription polymerase chain reaction.

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Saade, M; Aparicio, F; Sánchez-Navarro, J A; Herranz, M C; Myrta, A; Di Terlizzi, B; Pallás, V

2000-12-01

ABSTRACT The three most economically damaging ilarviruses affecting stone fruit trees on a worldwide scale are the related Prunus necrotic ringspot virus (PNRSV), Prune dwarf virus (PDV), and Apple mosaic virus (ApMV). Nonisotopic molecular hybridization and multiplex reverse-transcription polymerase chain reaction (RT-PCR) methodologies were developed that could detect all these viruses simultaneously. The latter technique was advantageous because it was discriminatory. For RT-PCR, a degenerate antisense primer was designed which was used in conjunction with three virus-specific sense primers. The amplification efficiencies for the detection of the three viruses in the multiplex RT-PCR reaction were identical to those obtained in the single RT-PCR reactions for individual viruses. This cocktail of primers was able to amplify sequences from all of the PNRSV, ApMV, and PDV isolates tested in five Prunus spp. hosts (almond, apricot, cherry, peach, and plum) occurring naturally in single or multiple infections. For ApMV isolates, differences in the electrophoretic mobilities of the PCR products were observed. The nucleotide sequence of the amplified products of two representative ApMV isolates was determined, and comparative analysis revealed the existence of a 28-nucleotide deletion in the sequence of isolates showing the faster electrophoretic mobility. To our knowledge, this is the first report on the simultaneous detection of three plant viruses by multiplex RT-PCR in woody hosts. This multiplex RT-PCR could be a useful time and cost saving method for indexing these three ilarviruses, which damage stone fruit tree yields, and for the analysis of mother plants in certification programs.

An efficient viral vector for functional genomic studies of Prunus fruit trees and its induced resistance to Plum pox virus via silencing of a host factor gene.

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Cui, Hongguang; Wang, Aiming

2017-03-01

RNA silencing is a powerful technology for molecular characterization of gene functions in plants. A commonly used approach to the induction of RNA silencing is through genetic transformation. A potent alternative is to use a modified viral vector for virus-induced gene silencing (VIGS) to degrade RNA molecules sharing similar nucleotide sequence. Unfortunately, genomic studies in many allogamous woody perennials such as peach are severely hindered because they have a long juvenile period and are recalcitrant to genetic transformation. Here, we report the development of a viral vector derived from Prunus necrotic ringspot virus (PNRSV), a widespread fruit tree virus that is endemic in all Prunus fruit production countries and regions in the world. We show that the modified PNRSV vector, harbouring the sense-orientated target gene sequence of 100-200 bp in length in genomic RNA3, could efficiently trigger the silencing of a transgene or an endogenous gene in the model plant Nicotiana benthamiana. We further demonstrate that the PNRSV-based vector could be manipulated to silence endogenous genes in peach such as eukaryotic translation initiation factor 4E isoform (eIF(iso)4E), a host factor of many potyviruses including Plum pox virus (PPV). Moreover, the eIF(iso)4E-knocked down peach plants were resistant to PPV. This work opens a potential avenue for the control of virus diseases in perennial trees via viral vector-mediated silencing of host factors, and the PNRSV vector may serve as a powerful molecular tool for functional genomic studies of Prunus fruit trees. © 2016 The Authors. Plant Biotechnology Journal published by Society for Experimental Biology and The Association of Applied Biologists and John Wiley & Sons Ltd.

Genomic segments RNA1 and RNA2 of Prunus necrotic ringspot virus codetermine viral pathogenicity to adapt to alternating natural Prunus hosts.

Science.gov (United States)

Cui, Hongguang; Hong, Ni; Wang, Guoping; Wang, Aiming

2013-05-01

Prunus necrotic ringspot virus (PNRSV) affects Prunus fruit production worldwide. To date, numerous PNRSV isolates with diverse pathological properties have been documented. To study the pathogenicity of PNRSV, which directly or indirectly determines the economic losses of infected fruit trees, we have recently sequenced the complete genome of peach isolate Pch12 and cherry isolate Chr3, belonging to the pathogenically aggressive PV32 group and mild PV96 group, respectively. Here, we constructed the Chr3- and Pch12-derived full-length cDNA clones that were infectious in the experimental host cucumber and their respective natural Prunus hosts. Pch12-derived clones induced much more severe symptoms than Chr3 in cucumber, and the pathogenicity discrepancy between Chr3 and Pch12 was associated with virus accumulation. By reassortment of genomic segments, swapping of partial genomic segments, and site-directed mutagenesis, we identified the 3' terminal nucleotide sequence (1C region) in RNA1 and amino acid K at residue 279 in RNA2-encoded P2 as the severe virulence determinants in Pch12. Gain-of-function experiments demonstrated that both the 1C region and K279 of Pch12 were required for severe virulence and high levels of viral accumulation. Our results suggest that PNRSV RNA1 and RNA2 codetermine viral pathogenicity to adapt to alternating natural Prunus hosts, likely through mediating viral accumulation.

Tests for Transmission of Prunus Necrotic Ringspot and Two Nepoviruses by Criconemella xenoplax.

Science.gov (United States)

Yuan, W Q; Barnett, O W; Westcott, S W; Scott, S W

1990-10-01

In two of three trials, detectable color reactions in ELISA for Prunus necrotic ringspot virus (PNRSV) were observed for Criconemella xenoplax handpicked from the root zone of infected peach trees. Criconemella xenoplax (500/pot) handpicked from root zones of peach trees infected with PNRSV failed to transmit the virus to cucumber or peach seedlings. The nematode also failed to transmit tomato ringspot (TomRSV) or tobacco ringspot viruses between cucumbers, although Xiphinema americanum transmitted TomRSV under the same conditions. Plants of peach, cucumber, Chenopodium quinoa, and Catharanthus roseus were not infected by PNRSV when grown in soil containing C. xenoplax collected from root zones of PNRSV-infected trees. Shirofugen cherry scions budded on Mazzard cherry seedling rootstocks remained symptomless when transplanted into root zones of PNRSV-infected trees. Virus transmission was not detected by ELISA when C. xenoplax individuals were observed to feed on cucumber root explants that were infected with PNRSV and subsequently fed on roots of Prunus besseyi in agar cultures. Even if virus transmission by C. xenoplax occurs via contamination rather than by a specific mechanism, it must be rare.

Development of a Grapevine Pruning Algorithm for Using in Pruning

Directory of Open Access Journals (Sweden)

S. M Hosseini

2017-10-01

Full Text Available Introduction Great areas of the orchards in the world are dedicated to cultivation of the grapevine. Normally grape vineyards are pruned twice a year. Among the operations of grape production, winter pruning of the bushes is the only operation that still has not been fully mechanized while it is known as the most laborious jobs in the farm. Some of the grape producing countries use various mechanical machines to prune the grapevines, but in most cases, these machines do not have a good performance. Therefore intelligent pruning machine seems to be necessary in this regard and this intelligent pruning machines can reduce the labor required to prune the vineyards. It this study in was attempted to develop an algorithm that uses image processing techniques to identify which parts of the grapevine should be cut. Stereo vision technique was used to obtain three dimensional images from the bare bushes whose leaves were fallen in autumn. Stereo vision systems are used to determine the depth from two images taken at the same time but from slightly different viewpoints using two cameras. Each pair of images of a common scene is related by a popular geometry, and corresponding points in the images pairs are constrained to lie on pairs of conjugate popular lines. Materials and Methods Photos were taken from gardens of the Research Center for Agriculture and Natural Resources of Fars province, Iran. At first, the distance between the plants and the cameras should be determined. The distance between the plants and cameras can be obtained by using the stereo vision techniques. Therefore, this method was used in this paper by two pictures taken from each plant with the left and right cameras. The algorithm was written in MATLAB. To facilitate the segmentation of the branches from the rows at the back, a blue plate with dimensions of 2×2 m2 were used at the background. After invoking the images, branches were segmented from the background to produce the binary

7 CFR 993.7 - French prunes.

Science.gov (United States)

2010-01-01

... 7 Agriculture 8 2010-01-01 2010-01-01 false French prunes. 993.7 Section 993.7 Agriculture... Order Regulating Handling Definitions § 993.7 French prunes. French prunes means: (a) Prunes produced from plums of the following varieties of plums: French (Prune d'Agen, Petite Prune d'Agen), Coates (Cox...

Virulence and molecular polymorphism of Prunus necrotic ringspot virus isolates.

Science.gov (United States)

Hammond, R W; Crosslin, J M

1998-07-01

Prunus necrotic ringspot virus (PNRSV) occurs as numerous strains or isolates that vary widely in their pathogenic, biophysical and serological properties. Prior attempts to distinguish pathotypes based upon physical properties have not been successful; our approach was to examine the molecular properties that may distinguish these isolates. The nucleic acid sequence was determined from 1.65 kbp RT-PCR products derived from RNA 3 of seven distinct isolates of PNRSV that differ serologically and in pathology on sweet cherry. Sequence comparisons of ORF 3a (putative movement protein) and ORF 3b (coat protein) revealed single nucleotide and amino acid differences with strong correlations to serology and symptom types (pathotypes). Sequence differences between serotypes and pathotypes were also reflected in the overall phylogenetic relationships between the isolates.

Generic Amplicon Deep Sequencing to Determine Ilarvirus Species Diversity in Australian Prunus.

Science.gov (United States)

Kinoti, Wycliff M; Constable, Fiona E; Nancarrow, Narelle; Plummer, Kim M; Rodoni, Brendan

2017-01-01

The distribution of Ilarvirus species populations amongst 61 Australian Prunus trees was determined by next generation sequencing (NGS) of amplicons generated using a genus-based generic RT-PCR targeting a conserved region of the Ilarvirus RNA2 component that encodes the RNA dependent RNA polymerase (RdRp) gene. Presence of Ilarvirus sequences in each positive sample was further validated by Sanger sequencing of cloned amplicons of regions of each of RNA1, RNA2 and/or RNA3 that were generated by species specific PCRs and by metagenomic NGS. Prunus necrotic ringspot virus (PNRSV) was the most frequently detected Ilarvirus , occurring in 48 of the 61 Ilarvirus -positive trees and Prune dwarf virus (PDV) and Apple mosaic virus (ApMV) were detected in three trees and one tree, respectively. American plum line pattern virus (APLPV) was detected in three trees and represents the first report of APLPV detection in Australia. Two novel and distinct groups of Ilarvirus -like RNA2 amplicon sequences were also identified in several trees by the generic amplicon NGS approach. The high read depth from the amplicon NGS of the generic PCR products allowed the detection of distinct RNA2 RdRp sequence variant populations of PNRSV, PDV, ApMV, APLPV and the two novel Ilarvirus -like sequences. Mixed infections of ilarviruses were also detected in seven Prunus trees. Sanger sequencing of specific RNA1, RNA2, and/or RNA3 genome segments of each virus and total nucleic acid metagenomics NGS confirmed the presence of PNRSV, PDV, ApMV and APLPV detected by RNA2 generic amplicon NGS. However, the two novel groups of Ilarvirus -like RNA2 amplicon sequences detected by the generic amplicon NGS could not be associated to the presence of sequence from RNA1 or RNA3 genome segments or full Ilarvirus genomes, and their origin is unclear. This work highlights the sensitivity of genus-specific amplicon NGS in detection of virus sequences and their distinct populations in multiple samples, and the

Generic Amplicon Deep Sequencing to Determine Ilarvirus Species Diversity in Australian Prunus

Directory of Open Access Journals (Sweden)

Wycliff M. Kinoti

2017-06-01

Full Text Available The distribution of Ilarvirus species populations amongst 61 Australian Prunus trees was determined by next generation sequencing (NGS of amplicons generated using a genus-based generic RT-PCR targeting a conserved region of the Ilarvirus RNA2 component that encodes the RNA dependent RNA polymerase (RdRp gene. Presence of Ilarvirus sequences in each positive sample was further validated by Sanger sequencing of cloned amplicons of regions of each of RNA1, RNA2 and/or RNA3 that were generated by species specific PCRs and by metagenomic NGS. Prunus necrotic ringspot virus (PNRSV was the most frequently detected Ilarvirus, occurring in 48 of the 61 Ilarvirus-positive trees and Prune dwarf virus (PDV and Apple mosaic virus (ApMV were detected in three trees and one tree, respectively. American plum line pattern virus (APLPV was detected in three trees and represents the first report of APLPV detection in Australia. Two novel and distinct groups of Ilarvirus-like RNA2 amplicon sequences were also identified in several trees by the generic amplicon NGS approach. The high read depth from the amplicon NGS of the generic PCR products allowed the detection of distinct RNA2 RdRp sequence variant populations of PNRSV, PDV, ApMV, APLPV and the two novel Ilarvirus-like sequences. Mixed infections of ilarviruses were also detected in seven Prunus trees. Sanger sequencing of specific RNA1, RNA2, and/or RNA3 genome segments of each virus and total nucleic acid metagenomics NGS confirmed the presence of PNRSV, PDV, ApMV and APLPV detected by RNA2 generic amplicon NGS. However, the two novel groups of Ilarvirus-like RNA2 amplicon sequences detected by the generic amplicon NGS could not be associated to the presence of sequence from RNA1 or RNA3 genome segments or full Ilarvirus genomes, and their origin is unclear. This work highlights the sensitivity of genus-specific amplicon NGS in detection of virus sequences and their distinct populations in multiple samples

Prune-Belly Sendromu: Olgu Sunumu

OpenAIRE

BELET, N.; PAKSU, Ş.; BELET, Ü.; KÜÇÜKÖDÜK, Ş.

2010-01-01

Prune belly sendromu abdominal kasların yokluğu, kriptorşidizm ve obstruktif üropati tri-adından oluşur. Bu yazıda nadir görülmesi nedeniyle prune belly sendromlu bir hasta sunulmuş, literatür bilgileri gözden geçirilmiştir. The Prune-Belly Syndrome: A Case Report The Prune belly syndrome consists of the triad absence of abdominal muscles, cryptorchidism and obstructive uropathy. A rare case of Prune belly syndrome was presented and the literature was reviewed.

Pruning devices in 1995

International Nuclear Information System (INIS)

Mutikainen, A.

1995-01-01

This bulletin describes the market situation in April 1995 in Finland concerning devices suitable for silvicultural pruning in forestry. The review is based on the responses to a questionnaire sent to manufacturers and importers. Manually operated pruning devices, relying entirely on muscle power, were manufactured by six companies. There were four models each of branch saws and branch cutters and two models of branch blades. Motorised pruning devices, with the branch-severing power supplied by a combustion engine, battery or a power unit were manufactured by five companies. There were twelve models in all. The amount of pruning done in Finland has diminished year by year from the peak years of 1988-1989 when ca. 13000 hectares were pruned. In 1993 the corresponding figure was 5290 hectares of which 3930 hectares applied to private, non-industrial forestry. One contributing factor to this fall may be seen in the changes that have occurred in forest improvement regulations. The annual target set in the Forest 2000 program is for 20000 hectares to be pruned. (author)

Better marking means cheaper pruning.

Science.gov (United States)

Kenneth R. Eversole

1953-01-01

Careful selection of trees to be pruned can make the difference between profit and loss on the pruning investment, especially in stands where no thinning is contemplated. Expert marking is required to make sure that the pruned trees will grow rapidly. The most important variable influencing the cost of clear wood produced by pruning is growth rate. For example, at 3...

Comparative expression profiling of Nicotiana benthamiana leaves systemically infected with three fruit tree viruses.

Science.gov (United States)

Dardick, Christopher

2007-08-01

Plant viruses cause a wide array of disease symptoms and cytopathic effects. Although some of these changes are virus specific, many appear to be common even among diverse viruses. Currently, little is known about the underlying molecular determinants. To identify gene expression changes that are concomitant with virus symptoms, we performed comparative expression profiling experiments on Nicotiana benthamiana leaves infected with one of three different fruit tree viruses that produce distinct symptoms: Plum pox potyvirus (PPV; leaf distortion and mosaic), Tomato ringspot nepovirus (ToRSV; tissue necrosis and general chlorosis), and Prunus necrotic ringspot ilarvirus (PNRSV; subtle chlorotic mottling). The numbers of statistically significant genes identified were consistent with the severity of the observed symptoms: 1,082 (ToRSV), 744 (PPV), and 89 (PNRSV). In all, 56% of the gene expression changes found in PPV-infected leaves also were altered by ToRSV, 87% of which changed in the same direction. Both PPV- and ToRSV-infected leaves showed widespread repression of genes associated with plastid functions. PPV uniquely induced the expression of large numbers of cytosolic ribosomal genes whereas ToRSV repressed the expression of plastidic ribosomal genes. How these and other observed expression changes might be associated with symptom development are discussed.

Genetic diversity of the movement and coat protein genes of South American isolates of Prunus necrotic ringspot virus.

Science.gov (United States)

Fiore, Nicola; Fajardo, Thor V M; Prodan, Simona; Herranz, María Carmen; Aparicio, Frederic; Montealegre, Jaime; Elena, Santiago F; Pallás, Vicente; Sánchez-Navarro, Jesús

2008-01-01

Prunus necrotic ringspot virus (PNRSV) is distributed worldwide, but no molecular data have been previously reported from South American isolates. The nucleotide sequences corresponding to the movement (MP) and coat (CP) proteins of 23 isolates of PNRSV from Chile, Brazil, and Uruguay, and from different Prunus species, have been obtained. Phylogenetic analysis performed with full-length MP and CP sequences from all the PNRSV isolates confirmed the clustering of the isolates into the previously reported PV32-I, PV96-II and PE5-III phylogroups. No association was found between specific sequences and host, geographic origin or symptomatology. Comparative analysis showed that both MP and CP have phylogroup-specific amino acids and all of the motifs previously characterized for both proteins. The study of the distribution of synonymous and nonsynonymous changes along both open reading frames revealed that most amino acid sites are under the effect of negative purifying selection.

Comparative analysis among the small RNA populations of source, sink and conductive tissues in two different plant-virus pathosystems.

Science.gov (United States)

Herranz, Mari Carmen; Navarro, Jose Antonio; Sommen, Evelien; Pallas, Vicente

2015-02-22

In plants, RNA silencing plays a fundamental role as defence mechanism against viruses. During last years deep-sequencing technology has allowed to analyze the sRNA profile of a large variety of virus-infected tissues. Nevertheless, the majority of these studies have been restricted to a unique tissue and no comparative analysis between phloem and source/sink tissues has been conducted. In the present work, we compared the sRNA populations of source, sink and conductive (phloem) tissues in two different plant virus pathosystems. We chose two cucurbit species infected with two viruses very different in genome organization and replication strategy; Melon necrotic spot virus (MNSV) and Prunus necrotic ringspot virus (PNRSV). Our findings showed, in both systems, an increase of the 21-nt total sRNAs together with a decrease of those with a size of 24-nt in all the infected tissues, except for the phloem where the ratio of 21/24-nt sRNA species remained constant. Comparing the vsRNAs, both PNRSV- and MNSV-infected plants share the same vsRNA size distribution in all the analyzed tissues. Similar accumulation levels of sense and antisense vsRNAs were observed in both systems except for roots that showed a prevalence of (+) vsRNAs in both pathosystems. Additionally, the presence of overrepresented discrete sites along the viral genome, hot spots, were identified and validated by stem-loop RT-PCR. Despite that in PNRSV-infected plants the presence of vsRNAs was scarce both viruses modulated the host sRNA profile. We compare for the first time the sRNA profile of four different tissues, including source, sink and conductive (phloem) tissues, in two plant-virus pathosystems. Our results indicate that antiviral silencing machinery in melon and cucumber acts mainly through DCL4. Upon infection, the total sRNA pattern in phloem remains unchanged in contrast to the rest of the analyzed tissues indicating a certain tissue-tropism to this polulation. Independently of the

Differentiation of closely related but biologically distinct cherry isolates of Prunus necrotic ringspot virus by polymerase chain reaction.

Science.gov (United States)

Hammond, R W; Crosslin, J M; Pasini, R; Howell, W E; Mink, G I

1999-07-01

Prunus necrotic ringspot ilarvirus (PNRSV) exists as a number of biologically distinct variants which differ in host specificity, serology, and pathology. Previous nucleotide sequence alignment and phylogenetic analysis of cloned reverse transcription-polymerase chain reaction (RT-PCR) products of several biologically distinct sweet cherry isolates revealed correlations between symptom type and the nucleotide and amino acid sequences of the 3a (putative movement protein) and 3b (coat protein) open reading frames. Based upon this analysis, RT-PCR assays have been developed that can identify isolates displaying different symptoms and serotypes. The incorporation of primers in a multiplex PCR protocol permits rapid detection and discrimination among the strains. The results of PCR amplification using type-specific primers that amplify a portion of the coat protein gene demonstrate that the primer-selection procedure developed for PNRSV constitutes a reliable method of viral strain discrimination in cherry for disease control and will also be useful for examining biological diversity within the PNRSV virus group.

A one-step multiplex RT-PCR assay for simultaneous detection of four viruses that infect peach.

Science.gov (United States)

Yu, Y; Zhao, Z; Jiang, D; Wu, Z; Li, S

2013-10-01

A multiplex reverse transcription polymerase chain reaction (mRT-PCR) assay was developed to enable the simultaneous detection and differentiation of four viruses that infect peach, namely Apple chlorotic leaf spot virus (ACLSV), Cherry green ring mottle virus (CGRMV), Prunus necrotic ringspot virus (PNRSV) and Apricot pseudo-chlorotic leaf spot virus (APCLSV). In this study, four pairs of primers, one specific for each virus, were designed; the corresponding PCR products were 632, 439, 346 and 282 bp in length for ACLSV, CGRMV, PNRSV and APCLSV, respectively, and the fragments could be distinguished clearly by agarose gel electrophoresis. The sensitivity and specificity of the method were tested using individual RT-PCR and enzyme-linked immunosorbent assay (ELISA), and the identity of the RT-PCR amplification products was also confirmed by DNA sequencing. The results of RT-PCR and ELISA, along with batch detection using samples collected from peach orchards, revealed that this rapid and simple technique is an effective way to identify the four viruses simultaneously. The mRT-PCR assay described in this study was developed for the simultaneous detection of four peach viruses from infected peach samples is reliable and sensitive. In contrast to conventional uniplex RT-PCR, mRT-PCR is more efficient, reducing costs, time and handling when testing large numbers of samples. This rapid and simple method is useful for large-scale surveys of viruses that infect peach. © 2013 The Society for Applied Microbiology.

The RNA 5 of Prunus necrotic ringspot virus is a biologically inactive copy of the 3'-UTR of the genomic RNA 3.

Science.gov (United States)

Di Terlizzi, B; Skrzeczkowski, L J; Mink, G I; Scott, S W; Zimmerman, M T

2001-01-01

In addition to the four RNAs known to be encapsidated by Prunus necrotic ringspot virus (PNRSV) and Apple mosaic virus (ApMV), an additional small RNA (RNA 5) was present in purified preparations of several isolates of both viruses. RNA 5 was always produced following infection of a susceptible host by an artificial mixture of RNAs 1, 2, 3, and 4 indicating that it was a product of viral replication. RNA 5 does not activate the infectivity of mixtures that contain the three genomic RNAs (RNA 1 + RNA 2 + RNA 3) nor does it appear to modify symptom expression. Results from hybridization studies suggested that RNA 5 had partial sequence homology with RNAs 1, 2, 3, and 4. Cloning and sequencing the RNA 5 of isolate CH 57/1-M of PNRSV, and the 3' termini of the RNA 1, RNA 2 and RNA 3 of this isolate indicated that it was a copy of the 3' untranslated terminal region (3'-UTR) of the genomic RNA 3.

The molecular variability analysis of the RNA 3 of fifteen isolates of Prunus necrotic ringspot virus sheds light on the minimal requirements for the synthesis of its subgenomic RNA.

Science.gov (United States)

Aparicio, Frederic; Pallás, Vicente

2002-01-01

The nucleotide sequences of the RNA 3 of fifteen isolates of Prunus necrotic ringspot virus (PNRSV) varying in the symptomatology they cause in six different Prunus spp. were determined. Analysis of the molecular variability has allowed, in addition to study the phylogenetic relationships among them, to evaluate the minimal requirements for the synthesis of the subgenomic RNA in Ilarvirus genus and their comparison to other members of the Bromoviridae family. Computer assisted comparisons led recently to Jaspars (Virus Genes 17, 233-242, 1998) to propose that a hairpin structure in viral minus strand RNA is required for subgenomic promoter activity of viruses from at least two, and possibly all five, genera in the family of Bromoviridae. For PNRSV and Apple mosaic virus two stable hairpins were proposed whereas for the rest of Ilarviruses and the other four genera of the Bromoviridae family only one stable hairpin was predicted. Comparative analysis of this region among the fifteen PNRSV isolates characterized in this study revealed that two of them showed a 12-nt deletion that led to the disappearance of the most proximal hairpin to the initiation site. Interestingly, the only hairpin found in these two isolates is very similar in primary and secondary structure to the one previously shown in Brome mosaic virus to be required for the synthesis of the subgenomic RNA. In this hairpin, the molecular diversity was concentrated mostly at the loop whereas compensatory mutations were observed at the base of the stem strongly suggesting its functional relevance. The evolutionary implications of these observations are discussed.

7 CFR 993.6 - Non-French prunes.

Science.gov (United States)

2010-01-01

... 7 Agriculture 8 2010-01-01 2010-01-01 false Non-French prunes. 993.6 Section 993.6 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements... Order Regulating Handling Definitions § 993.6 Non-French prunes. Non-French prunes means prunes commonly...

Induction of cinnamate 4-hydroxylase and phenylpropanoids in virus-infected cucumber and melon plants.

OpenAIRE

Belles Albert, José Mª; López-Gresa, María Pilar; Fayos, J.; Pallás Benet, Vicente; Rodrigo Bravo, Ismael; Conejero Tomás, Vicente

2008-01-01

[EN] In the present work, we have looked for the nature of the phenylpropanoids biosynthesized during the plant-pathogen reaction of two systems, Cucumis sativus and Cucumis melo infected with either prunus necrotic ringspot virus (PNRSV) or melon necrotic spot virus (MNSV), respectively. An accumulation of p-coumaric, caffeic and/or ferulic acids was observed in infected plant extracts hydrolysed with P-glucosidase or esterase. Analysis of undigested samples by HPLC/ESI revealed that these c...

Detection of selected plant viruses by microarrays

OpenAIRE

HRABÁKOVÁ, Lenka

2013-01-01

The main aim of this master thesis was the simultaneous detection of four selected plant viruses ? Apple mosaic virus, Plum pox virus, Prunus necrotic ringspot virus and Prune harf virus, by microarrays. The intermediate step in the process of the detection was optimizing of multiplex polymerase chain reaction (PCR).

Preparation of recombinant coat protein of Prunus necrotic ringspot virus.

Science.gov (United States)

Petrzik, K; Mráz, I; Kubelková, D

2001-02-01

The coat protein (CP) gene of Prunus necrotic ringspot virus (PNRSV) was cloned into pET 16b vector and expressed in Escherichia coli. CP-enriched fractions were prepared from whole cell lysate by differential centrifugation. The fraction sedimenting at 20,000 x g for 30 mins was used for preparation of a rabbit antiserum to CP. This antiserum had a titer of 1:2048 and reacted in a double-antibody sandwich ELISA (DAS-ELISA).

Simultaneous detection and identification of four cherry viruses by two step multiplex RT-PCR with an internal control of plant nad5 mRNA.

Science.gov (United States)

Noorani, Md Salik; Awasthi, Prachi; Sharma, Maheshwar Prasad; Ram, Raja; Zaidi, Aijaz Asgar; Hallan, Vipin

2013-10-01

A multiplex reverse transcription-polymerase chain reaction (mRT-PCR) was developed and standardized for the simultaneous detection of four cherry viruses: Cherry virus A (CVA, Genus; Capillovirus), Cherry necrotic rusty mottle virus (CNRMV, unassigned species of the Betaflexiviridae), Little cherry virus 1 (LChV-1, Genus; Closterovirus) and Prunus necrotic ringspot virus (PNRSV, Genus; Ilarvirus) with nad5 as plant internal control. A reliable and quick method for total plant RNA extraction from pome and stone fruit trees was also developed. To minimize primer dimer formation, a single antisense primer for CVA and CNRMV was used. A mixture of random hexamer and oligo (dT) primer was used for cDNA synthesis, which was highly suited and economic for multiplexing. All four viruses were detected successfully by mRT-PCR in artificially created viral RNA mixture and field samples of sweet cherry. The identity of the viruses was confirmed by sequencing. The assay could detect above viruses in diluted cDNA (10(-4)) and RNA (10(-3), except PNRSV which was detected only till ten times lesser dilution). The developed mRT-PCR will not only be useful for the detection of viruses from single or multiple infections of sweet cherry plants but also for other stone and pome fruits. The developed method will be therefore quite helpful for virus indexing, plant quarantine and certification programs. This is the first report for the simultaneous detection of four cherry viruses by mRT-PCR. Copyright © 2013 Elsevier B.V. All rights reserved.

21 CFR 146.187 - Canned prune juice.

Science.gov (United States)

2010-04-01

... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Canned prune juice. 146.187 Section 146.187 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR... Beverages § 146.187 Canned prune juice. (a) Canned prune juice is the food prepared from a water extract of...

7 CFR 993.109 - Modified definition of non-French prunes.

Science.gov (United States)

2010-01-01

... 7 Agriculture 8 2010-01-01 2010-01-01 false Modified definition of non-French prunes. 993.109... definition of non-French prunes. The definition of non-French prunes set forth in § 993.6 is modified to read as follows: Non-French Prunes means prunes commonly known as Imperial, Sugar, Robe de Sargent, Burton...

Prune belly syndrome. A focused physical assessment.

Science.gov (United States)

Woods, Amanda G; Brandon, Debra H

2007-06-01

Prune belly syndrome, a rare congenital anomaly, exists almost exclusively in males and consists of genital and urinary abnormalities with partial or complete absence of abdominal wall musculature. The syndrome, caused by urethral obstruction early in development, is the result of massive bladder distention and urinary ascites, leading to degeneration of the abdominal wall musculature and failure of testicular descent. The impaired elimination of urine from the bladder leads to oligohydramnios, pulmonary hypoplasia, and Potter's facies. The syndrome has a broad spectrum of affected anatomy with different levels of severity. The exact etiology of prune belly syndrome is unknown, although several embryologic theories attempt to explain the anomaly. With advances in prenatal screening techniques, the diagnosis and possible treatment of prune belly syndrome can occur before birth, although controversy exists on the proper management of prune belly syndrome. This article explores the theories behind the pathophysiology and embryology of prune belly syndrome and its multisystemic effects on the newborn infant. Specific attention is paid to presentation, clinical features, head-to-toe physical assessment, family support, and nursing care of infants with prune belly syndrome.

A review of pruning fruit trees

Science.gov (United States)

Zhang, L.; Koc, A. B.; Wang, X. N.; Jiang, Y. X.

2018-05-01

The focus of this review is to present the results of studies and articles about ways to prune fruit trees. Pruning should be done in late winter or early spring so that the infection risk can be significantly decreased. This review will also offer an overview of methods to prevent infections and speed up recovery on the trees. The following is an interpretation of why high-power ultrasonic assisted pruning in the fruits trees is needed and will elaborate on the efficiency, labor costs, and safety, as well as space, location, and some environmental issues.

Characterization of apple stem grooving virus and apple chlorotic leaf spot virus identified in a crab apple tree.

Science.gov (United States)

Li, Yongqiang; Deng, Congliang; Bian, Yong; Zhao, Xiaoli; Zhou, Qi

2017-04-01

Apple stem grooving virus (ASGV), apple chlorotic leaf spot virus (ACLSV), and prunus necrotic ringspot virus (PNRSV) were identified in a crab apple tree by small RNA deep sequencing. The complete genome sequence of ACLSV isolate BJ (ACLSV-BJ) was 7554 nucleotides and shared 67.0%-83.0% nucleotide sequence identity with other ACLSV isolates. A phylogenetic tree based on the complete genome sequence of all available ACLSV isolates showed that ACLSV-BJ clustered with the isolates SY01 from hawthorn, MO5 from apple, and JB, KMS and YH from pear. The complete nucleotide sequence of ASGV-BJ was 6509 nucleotides (nt) long and shared 78.2%-80.7% nucleotide sequence identity with other isolates. ASGV-BJ and the isolate ASGV_kfp clustered together in the phylogenetic tree as an independent clade. Recombination analysis showed that isolate ASGV-BJ was a naturally occurring recombinant.

DANNP: an efficient artificial neural network pruning tool

KAUST Repository

Alshahrani, Mona

2017-11-06

Background Artificial neural networks (ANNs) are a robust class of machine learning models and are a frequent choice for solving classification problems. However, determining the structure of the ANNs is not trivial as a large number of weights (connection links) may lead to overfitting the training data. Although several ANN pruning algorithms have been proposed for the simplification of ANNs, these algorithms are not able to efficiently cope with intricate ANN structures required for complex classification problems. Methods We developed DANNP, a web-based tool, that implements parallelized versions of several ANN pruning algorithms. The DANNP tool uses a modified version of the Fast Compressed Neural Network software implemented in C++ to considerably enhance the running time of the ANN pruning algorithms we implemented. In addition to the performance evaluation of the pruned ANNs, we systematically compared the set of features that remained in the pruned ANN with those obtained by different state-of-the-art feature selection (FS) methods. Results Although the ANN pruning algorithms are not entirely parallelizable, DANNP was able to speed up the ANN pruning up to eight times on a 32-core machine, compared to the serial implementations. To assess the impact of the ANN pruning by DANNP tool, we used 16 datasets from different domains. In eight out of the 16 datasets, DANNP significantly reduced the number of weights by 70%–99%, while maintaining a competitive or better model performance compared to the unpruned ANN. Finally, we used a naïve Bayes classifier derived with the features selected as a byproduct of the ANN pruning and demonstrated that its accuracy is comparable to those obtained by the classifiers trained with the features selected by several state-of-the-art FS methods. The FS ranking methodology proposed in this study allows the users to identify the most discriminant features of the problem at hand. To the best of our knowledge, DANNP (publicly

7 CFR 993.149 - Receiving of prunes by handlers.

Science.gov (United States)

2010-01-01

... SERVICE (Marketing Agreements and Orders; Fruits, Vegetables, Nuts), DEPARTMENT OF AGRICULTURE DRIED... certifies that the dehydration process of the prunes being certified resulted in prunes eligible to be... conditioning by further drying or dehydration: Provided, That such prunes shall be identified and kept separate...

The complete nucleotide sequence of RNA 3 of a peach isolate of Prunus necrotic ringspot virus.

Science.gov (United States)

Hammond, R W; Crosslin, J M

1995-04-01

The complete nucleotide sequence of RNA 3 of the PE-5 peach isolate of Prunus necrotic ringspot ilarvirus (PNRSV) was obtained from cloned cDNA. The RNA sequence is 1941 nucleotides and contains two open reading frames (ORFs). ORF 1 consisted of 284 amino acids with a calculated molecular weight of 31,729 Da and ORF 2 contained 224 amino acids with a calculated molecular weight of 25,018 Da. ORF 2 corresponds to the coat protein gene. Expression of ORF 2 engineered into a pTrcHis vector in Escherichia coli results in a fusion polypeptide of approximately 28 kDa which cross-reacts with PNRSV polyclonal antiserum. Analysis of the coat protein amino acid sequence reveals a putative "zinc-finger" domain at the amino-terminal portion of the protein. Two tetranucleotide AUGC motifs occur in the 3'-UTR of the RNA and may function in coat protein binding and genome activation. ORF 1 homologies to other ilarviruses and alfalfa mosaic virus are confined to limited regions of conserved amino acids. The translated amino acid sequence of the coat protein gene shows 92% similarity to one isolate of apple mosaic virus, a closely related member of the ilarvirus group of plant viruses, but only 66% similarity to the amino acid sequence of the coat protein gene of a second isolate. These relationships are also reflected at the nucleotide sequence level. These results in one instance confirm the close similarities observed at the biophysical and serological levels between these two viruses, but on the other hand call into question the nomenclature used to describe these viruses.

Prune Belly Syndrome in Adolescence: A Case Report

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Prasad Mylarappa

2015-01-01

Full Text Available The Prune Belly syndrome also known as Eagle Barret syndrome is a rare disorder. We report a rare case of Prune Belly syndrome in 17 year old boy. Patient presented with complains of absence of both testis in scrotum since birth. On examination patient was found to have lax abdominal wall. Patient was further evaluated and found to have shrunken small right kidney and left hydroureteronephrosis and the diagnosis of Prune Belly Syndrome was made. Prune Belly Syndrome represents a wide spectrum of disease. Each patient must be dealt with on an individual basis. A course of watchful waiting with selective surgical intervention has also been successful.

Phylogeny of isolates of Prunus necrotic ringspot virus from the Ilarvirus Ringtest and identification of group-specific features.

Science.gov (United States)

Hammond, R W

2003-06-01

Isolates of Prunus necrotic ringspot virus (PNRSV) were examined to establish the level of naturally occurring sequence variation in the coat protein (CP) gene and to identify group-specific genome features that may prove valuable for the generation of diagnostic reagents. Phylogenetic analysis of a 452 bp sequence of 68 virus isolates, 20 obtained from the European Union Ilarvirus Ringtest held in October 1998, confirmed the clustering of the isolates into three distinct groups. Although no correlation was found between the sequence and host or geographic origin, there was a general trend for severe isolates to cluster into one group. Group-specific features have been identified for discrimination between virus strains.

Prune belly syndrome

Science.gov (United States)

Eagle-Barrett syndrome; Triad syndrome ... The exact causes of prune belly syndrome are unknown. The condition affects mostly boys. While in the womb, the developing baby's abdomen swells with fluid. Often, the cause is ...

Molecular Variability Among Isolates of Prunus Necrotic Ringspot Virus from Different Prunus spp.

Science.gov (United States)

Aparicio, F; Myrta, A; Di Terlizzi, B; Pallás, V

1999-11-01

ABSTRACT Viral sequences amplified by polymerase chain reaction from 25 isolates of Prunus necrotic ringspot virus (PNRSV), varying in the symptomatology they cause in six different Prunus spp., were analyzed for restriction fragment polymorphisms. Most of the isolates could be discriminated by using a combination of three different restriction enzymes. The nucleotide sequences of the RNA 4 of 15 of these isolates were determined. Sequence comparisons and phylogenetic analyses of the RNA 4 and coat proteins (CPs) revealed that all of the isolates clustered into three different groups, represented by three previously sequenced PNRSV isolates: PV32, PE5, and PV96. The PE5-type group was characterized by a 5' untranslated region that was clearly different from that of the other two groups. The PV32-type group was characterized by an extra hexanucleotide consisting of a duplication of the six immediately preceding nucleotides. Although most of the variability was observed in the first third of the CP, the amino acid residues in this region, which were previously thought to be functionally important in the replication cycle of the virus, were strictly conserved. No clear correlation with the type of symptom or host specificity could be observed. The validity of this grouping was confirmed when other isolates recently characterized by other authors were included in these analyses.

Respiratory function in the prune-belly syndrome.

OpenAIRE

Crompton, C H; MacLusky, I B; Geary, D F

1993-01-01

Respiratory function was evaluated in 11 patients with prune-belly syndrome. Nine had evidence of gas trapping and six of restrictive lung disease. These abnormalities of lung function appear to be secondary to the musculoskeletal disorder associated with prune-belly syndrome rather than parenchymal lung disease.

Respiratory function in the prune-belly syndrome.

Science.gov (United States)

Crompton, C H; MacLusky, I B; Geary, D F

1993-01-01

Respiratory function was evaluated in 11 patients with prune-belly syndrome. Nine had evidence of gas trapping and six of restrictive lung disease. These abnormalities of lung function appear to be secondary to the musculoskeletal disorder associated with prune-belly syndrome rather than parenchymal lung disease. PMID:8503677

Composability-Centered Convolutional Neural Network Pruning

Energy Technology Data Exchange (ETDEWEB)

Shen, Xipeng [North Carolina State University; Guan, Hui [North Carolina State University; Lim, Seung-Hwan [ORNL; Patton, Robert M. [ORNL

2018-02-01

This work studies the composability of the building blocks ofstructural CNN models (e.g., GoogleLeNet and Residual Networks) in thecontext of network pruning. We empirically validate that a networkcomposed of pre-trained building blocks (e.g. residual blocks andInception modules) not only gives a better initial setting fortraining, but also allows the training process to converge at asignificantly higher accuracy in much less time. Based on thatinsight, we propose a {\\em composability-centered} design for CNNnetwork pruning. Experiments show that this new scheme shortens theconfiguration process in CNN network pruning by up to 186.8X forResNet-50 and up to 30.2X for Inception-V3, and meanwhile, the modelsit finds that meet the accuracy requirement are significantly morecompact than those found by default schemes.

Prune belly syndrome associated with incomplete VACTERL

Directory of Open Access Journals (Sweden)

Ghritlaharey R

2007-01-01

Full Text Available A Prune Belly syndrome with VATER/VACTERL association is an extremely rare. They are either stillborn or die within few days of life, only few such cases have been reported in literature. We are presenting here a male neonate of Prune Belly syndrome associated with incomplete VACTERL with brief review of literature.

Prune belly syndrome in an adult Nigerian: case report.

Science.gov (United States)

Salako, A A; Takure, A O; Olajide, A O; Aarowolo, O A; Egberongbe, A A

2009-12-01

Prune Belly Syndrome is a rare congenital anomaly characterized by deficient anterior abdominal wall musculature, bilateral cryptorchidism, bilateral megaureters and often unilateral or bilateral vesico-ureteric junction obstruction. The report of prune belly syndrome in the adult is scanty. We report a case of prune belly syndrome in a 24 year old Nigerian who presented with 3 year history of recurrent right loin pain. Examination showed wrinkled abdominal skin, bilateral undescended testes and an hypoplastic rectus abdominis, below the umbilicus. Further evaluation revealed enlarged bladder, bilateral megaureters and right intra-abdominal testis. A diagnosis of Prune Belly Syndrome was made. The challenges in the diagnosis and management of this rare condition are highlighted in this presentation.

Efficient Pruning Method for Ensemble Self-Generating Neural Networks

Directory of Open Access Journals (Sweden)

Hirotaka Inoue

2003-12-01

Full Text Available Recently, multiple classifier systems (MCS have been used for practical applications to improve classification accuracy. Self-generating neural networks (SGNN are one of the suitable base-classifiers for MCS because of their simple setting and fast learning. However, the computation cost of the MCS increases in proportion to the number of SGNN. In this paper, we propose an efficient pruning method for the structure of the SGNN in the MCS. We compare the pruned MCS with two sampling methods. Experiments have been conducted to compare the pruned MCS with an unpruned MCS, the MCS based on C4.5, and k-nearest neighbor method. The results show that the pruned MCS can improve its classification accuracy as well as reducing the computation cost.

Prune Belly Syndrome | Hammond | South African Medical Journal

African Journals Online (AJOL)

Two cases of prune belly syndrome in Black infants are presented. The prune belly syndrome, or congenital absence of abdominal muscles, is accompanied by hydro-ureter, hydronephrosis, megalocystis and usually undescended testes. Other associated congenital defects occur, of which orthopaedic defects appear to be ...

Iterative Mixture Component Pruning Algorithm for Gaussian Mixture PHD Filter

Directory of Open Access Journals (Sweden)

Xiaoxi Yan

2014-01-01

Full Text Available As far as the increasing number of mixture components in the Gaussian mixture PHD filter is concerned, an iterative mixture component pruning algorithm is proposed. The pruning algorithm is based on maximizing the posterior probability density of the mixture weights. The entropy distribution of the mixture weights is adopted as the prior distribution of mixture component parameters. The iterative update formulations of the mixture weights are derived by Lagrange multiplier and Lambert W function. Mixture components, whose weights become negative during iterative procedure, are pruned by setting corresponding mixture weights to zeros. In addition, multiple mixture components with similar parameters describing the same PHD peak can be merged into one mixture component in the algorithm. Simulation results show that the proposed iterative mixture component pruning algorithm is superior to the typical pruning algorithm based on thresholds.

DANNP: an efficient artificial neural network pruning tool

KAUST Repository

AlShahrani, Mona; Soufan, Othman; Magana-Mora, Arturo; Bajic, Vladimir B.

2017-01-01

Although the ANN pruning algorithms are not entirely parallelizable, DANNP was able to speed up the ANN pruning up to eight times on a 32-core machine, compared to the serial implementations. To assess the impact of the ANN pruning by DANNP tool, we used 16 datasets from different domains. In eight out of the 16 datasets, DANNP significantly reduced the number of weights by 70%–99%, while maintaining a competitive or better model performance compared to the unpruned ANN. Finally, we used a naïve Bayes classifier derived with the features selected as a byproduct of the ANN pruning and demonstrated that its accuracy is comparable to those obtained by the classifiers trained with the features selected by several state-of-the-art FS methods. The FS ranking methodology proposed in this study allows the users to identify the most discriminant features of the problem at hand. To the best of our knowledge, DANNP (publicly available at www.cbrc.kaust.edu.sa/dannp) is the only available and on-line accessible tool that provides multiple parallelized ANN pruning options. Datasets and DANNP code can be obtained at www.cbrc.kaust.edu.sa/dannp/data.php and https://doi.org/10.5281/zenodo.1001086.

Genetic basis of prune belly syndrome: screening for HNF1β gene.

Science.gov (United States)

Granberg, Candace F; Harrison, Steven M; Dajusta, Daniel; Zhang, Shaohua; Hajarnis, Sachin; Igarashi, Peter; Baker, Linda A

2012-01-01

Although the cause of prune belly syndrome is unknown, familial evidence suggests a genetic component. Recently 2 nonfamilial cases of prune belly syndrome with chromosome 17q12 deletions encompassing the HNF1β gene have made this a candidate gene for prune belly syndrome. To date, there has been no large-scale screening of patients with prune belly syndrome for HNF1β mutations. We assessed the role of HNF1β in prune belly syndrome by screening for genomic mutations with functional characterization of any detected mutations. We studied patients with prune belly syndrome who were prospectively enrolled in our Pediatric Genitourinary DNA Repository since 2001. DNA from patient samples was amplified by polymerase chain reaction, sequenced for coding and splice regions of the HNF1β gene, and compared to control databases. We performed functional assay testing of the ability of mutant HNF1β to activate a luciferase construct with an HNF1β DNA binding site. From 32 prune belly syndrome probands (30 males, 2 females) HNF1β sequencing detected a missense mutation (V61G) in 1 child with prune belly syndrome. Absent in control databases, V61G was previously reported in 2 patients without prune belly syndrome who had congenital genitourinary anomalies. Functional testing showed similar luciferase activity compared to wild-type HNF1β, suggesting the V61G substitution does not disturb HNF1β function. One genomic HNF1β mutation was detected in 3% of patients with prune belly syndrome but found to be functionally normal. Thus, functionally significant HNF1β mutations are uncommon in prune belly syndrome, despite case reports of HNF1β deletions. Further genetic study is necessary, as identification of the genetic basis of prune belly syndrome may ultimately lead to prevention and improved treatments for this rare but severe syndrome. Copyright © 2012 American Urological Association Education and Research, Inc. Published by Elsevier Inc. All rights reserved.

Prune belly syndrome with pouch colon with scaphoid megalourethra

African Journals Online (AJOL)

We here report a rare association of megalourethra with pouch colon with prune belly syndrome. We also provide a newer embryological and prognostic perspective to this association. Keywords: megalourethra, prune belly syndrome pouch colon, scaphoid ...

Prune Belly Syndrome

Directory of Open Access Journals (Sweden)

Koyye Ravindranath Tagore

2011-01-01

Full Text Available Prune belly syndrome is a rare congenital disorder of the urinary system, characterized by a triad of abnormalities. The aetiology is not known. Many infants are either stillborn or die within the first few weeks of life from severe lung or kidney problems, or a combination of congenital anomalies.

A Case of Prune Belly Syndrome

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Wei Xu

2015-06-01

Full Text Available Prune belly syndrome (PBS is a rare congenital disorder characterized by deficient abdominal wall muscles, urinary tract malformation, and, in males, cryptorchidism. We present a case of PBS in China. The patient was a newborn baby boy who had wrinkled, “prune-like” abdominal skin, bilateral cryptorchidism, and urinary system malformation, complicated with hypoplasia of the lung and branch of the coronary artery–right ventricular fistula. His kidney function was inadequate. The patient subsequently died at age 28 days due to septicemia from a severe urinary tract infection.

A case of prune belly syndrome.

Science.gov (United States)

Xu, Wei; Wu, Hui; Wang, Dong-Xuan; Mu, Zhi-Hong

2015-06-01

Prune belly syndrome (PBS) is a rare congenital disorder characterized by deficient abdominal wall muscles, urinary tract malformation, and, in males, cryptorchidism. We present a case of PBS in China. The patient was a newborn baby boy who had wrinkled, "prune-like" abdominal skin, bilateral cryptorchidism, and urinary system malformation, complicated with hypoplasia of the lung and branch of the coronary artery-right ventricular fistula. His kidney function was inadequate. The patient subsequently died at age 28 days due to septicemia from a severe urinary tract infection. Copyright © 2013. Published by Elsevier B.V.

TREE CANOPY PRUNING DOES NOT REGULATE BIENNIAL BEARING IN ”ELSTAR” APPLE (Malus domestica Borkh.

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Nikola Pavičić

2004-12-01

Full Text Available Four alternative pruning strategies (A– 25 generative buds, B– 50 generative buds, C– 75 generative buds and D–100 generative buds per tree for Elstar apple cultivar and their possible impact on improvement in productivity were examined in 1999 and 2000. Year was significant factor for all traits, except yield. The pruning strategy is significant for number of fruits per flower cluster and fruit mass. Interaction year and pruning strategy is significant only for number of fruits per flower cluster. Fruit mass was larger for pruning strategy A compared to the pruning strategies C and D. Yield efficiency and biennial bearing index were not affected by pruning strategies. The biennial bearing index variance was the lowest for the pruning strategy B. Trunk cross sectional area (TCSA had negative impact on fruit mass in pruning strategy C. Correlation between the flower and crop density was positive in pruning strategy A. Flower density was in positive correlation with yield in pruning strategy C. The research shows that tree pruning alone will not result in adequate yield regulation in ‘Elstar’ apple.

Spinal motor neuron involvement in a patient with homozygous PRUNE mutation.

Science.gov (United States)

Iacomino, Michele; Fiorillo, Chiara; Torella, Annalaura; Severino, Mariasavina; Broda, Paolo; Romano, Catia; Falsaperla, Raffaele; Pozzolini, Giulia; Minetti, Carlo; Striano, Pasquale; Nigro, Vincenzo; Zara, Federico

2018-05-01

In the last few years, whole exome sequencing (WES) allowed the identification of PRUNE mutations in patients featuring a complex neurological phenotype characterized by severe neurodevelopmental delay, microcephaly, epilepsy, optic atrophy, and brain or cerebellar atrophy. We describe an additional patient with homozygous PRUNE mutation who presented with spinal muscular atrophy phenotype, in addition to the already known brain developmental disorder. This novel feature expands the clinical consequences of PRUNE mutations and allow to converge PRUNE syndrome with previous descriptions of neurodevelopmental/neurodegenerative disorders linked to altered microtubule dynamics. Copyright © 2017 European Paediatric Neurology Society. Published by Elsevier Ltd. All rights reserved.

Unified commutation-pruning technique for efficient computation of composite DFTs

Science.gov (United States)

Castro-Palazuelos, David E.; Medina-Melendrez, Modesto Gpe.; Torres-Roman, Deni L.; Shkvarko, Yuriy V.

2015-12-01

An efficient computation of a composite length discrete Fourier transform (DFT), as well as a fast Fourier transform (FFT) of both time and space data sequences in uncertain (non-sparse or sparse) computational scenarios, requires specific processing algorithms. Traditional algorithms typically employ some pruning methods without any commutations, which prevents them from attaining the potential computational efficiency. In this paper, we propose an alternative unified approach with automatic commutations between three computational modalities aimed at efficient computations of the pruned DFTs adapted for variable composite lengths of the non-sparse input-output data. The first modality is an implementation of the direct computation of a composite length DFT, the second one employs the second-order recursive filtering method, and the third one performs the new pruned decomposed transform. The pruned decomposed transform algorithm performs the decimation in time or space (DIT) data acquisition domain and, then, decimation in frequency (DIF). The unified combination of these three algorithms is addressed as the DFTCOMM technique. Based on the treatment of the combinational-type hypotheses testing optimization problem of preferable allocations between all feasible commuting-pruning modalities, we have found the global optimal solution to the pruning problem that always requires a fewer or, at most, the same number of arithmetic operations than other feasible modalities. The DFTCOMM method outperforms the existing competing pruning techniques in the sense of attainable savings in the number of required arithmetic operations. It requires fewer or at most the same number of arithmetic operations for its execution than any other of the competing pruning methods reported in the literature. Finally, we provide the comparison of the DFTCOMM with the recently developed sparse fast Fourier transform (SFFT) algorithmic family. We feature that, in the sensing scenarios with

Structural study of gubernaculum testis in fetuses with prune belly syndrome.

Science.gov (United States)

Costa, Suelen F; Costa, Waldemar S; Sampaio, Francisco J B; Favorito, Luciano A

2015-05-01

We compared and contrasted the structure of the gubernaculum testis in fetuses with prune belly syndrome and normal controls. We studied a total of 6 gubernacula from 3 male fetuses with prune belly syndrome and a total of 14 from 7 male fetuses without an anomaly. Gubernacular specimens were cut into 5 μm sections and stained with Masson trichrome to quantify connective tissue and smooth muscle cells, with Weigert stain to observe elastic fibers and with picrosirius red with polarization to observe collagen. Immunohistochemical analysis was done with tubulin to observe the nerves. Images were captured with a BX51 microscope and DP70 camera (Olympus®). Stereological analysis was done with Image-Pro and ImageJ (MediaCybernetics®) using a grid to determine volumetric density. Means were statistically compared with the Mann-Whitney test. All tests were 2-sided with p Prune belly syndrome fetuses were at 17 to 31 weeks of gestation and control fetuses were at 12 to 35 weeks of gestation. Quantitative analysis showed no difference in the volumetric density of smooth muscle cells in prune belly syndrome vs control gubernacula (mean 15.70% vs 19%, p = 0.2321). Collagen fiber analysis revealed a predominance of green areas in prune belly syndrome gubernacula, suggesting collagen type III, and a predominance of red areas in control gubernacula, suggesting collagen type I. Elastic fibers were significantly smaller in prune belly syndrome gubernacula than in control gubernacula (mean 14.06% vs 24.6%, p = 0.0190). Quantitative analysis demonstrated no difference in the volumetric density of nerves in prune belly syndrome or control gubernacula (mean 5.200% vs 3.158%, p = 0.2302). The gubernaculum in fetuses with prune belly syndrome had altered concentrations of collagen and elastic fibers. These structural alterations could be one of the factors involved in cryptorchidism in prune belly syndrome. Copyright © 2015. Published by Elsevier Inc.

RECONSTRUCTION OF THE URINARY TRACT IN PRUNE BELLY SYNDROME

OpenAIRE

竹内, 秀雄; 小松, 洋輔; 友吉, 唯夫; 吉田, 修

1981-01-01

Three of five patients with prune belly syndrome which we experienced had constructive surgery of the urinary tract and had good results. In the Japanese literatures, 23 of 56 cases which had been reported up to date died. More proper treatment should be done in prune belly syndrome.

Effects of pruning in Monterey pine plantations affected by Fusarium circinatum

Energy Technology Data Exchange (ETDEWEB)

Bezos, D.; Lomba, J. M.; Martinez-Alvarez, P.; Fernandez, M.; Diez, J. J.

2012-07-01

Fusarium circinatum Nirenberg and O'Donnell (1998) is the causal agent of Pitch Canker Disease (PCD) in Pinus species, producing damage to the main trunk and lateral branches as well as causing branch dieback. The disease has been detected recently in northern Spain in Pinus spp. seedlings at nurseries and in Pinus radiata D. Don adult trees in plantations. Fusarium circinatum seems to require a wound to enter the tree, not only that as caused by insects but also that resulting from damage by humans, i.e. mechanical wounds. However, the effects of pruning on the infection process have yet to be studied. The aim of the present study was to know how the presence of mechanical damage caused by pruning affects PCD occurrence and severity in P. radiata plantations. Fifty P. radiata plots (pruned and unpruned) distributed throughout 16 sites affected by F. circinatum in the Cantabria region (northern Spain) were studied. Symptoms of PCD presence, such as dieback, oozing cankers and trunk deformation were evaluated in 25 trees per plot and related to pruning effect. A significant relationship between pruning and the number of cankers per tree was observed, concluding that wounds caused by pruning increase the chance of pathogen infection. Other trunk symptoms, such as the presence of resin outside the cankers, were also higher in pruned plots. These results should be taken into account for future management of Monterey Pine plantations. (Author) 36 refs.

Rare association of prune belly syndrome with pouch colon

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M Ragavan

2011-01-01

Full Text Available M Ragavan1, U Haripriya1, PV Pradeep1, J Sarvavinothini21Department of Endocrine Surgery, 2Department of Anaesthesia, Narayana Medical College and Superspeciality Hospital, Nellore, Andhra Pradesh, IndiaAbstract: Prune belly syndrome is a triad characterized by abdominal wall musculature deficiency, cryptorchidism and urinary tract abnormalities, and is often associated with other anomalies. Although associated anorectal anomalies have been reported with this syndrome, only two cases of pouch colon, a rare type of anorectal malformation, have been reported. We report a case of prune belly syndrome with pouch colon presenting with retention of urine.Keywords: prune belly, triad syndrome, pouch colon, anorectal malformation

Effect of Root Pruning and Irrigation Regimes on Yield and Physiology of Pear Trees

DEFF Research Database (Denmark)

Wang, Yufei

Clara Frijs’ is the dominant pear (Pyrus communis L.) cultivar in Denmark. It is vigorous with long annual shoots, and therefore can be difficult to prune. Root pruning has been widely used to control the canopy size of fruit trees including pears. However, root pruned trees are more likely......, it was concluded that root pruning not only decreases water uptake but also nutrient uptake, and both have contributed to the reduced canopy growth. Supplemental irrigation partially improved the tree water status and nitrogen uptake without stimulating additional shoot growth in the root pruned trees....... A combination of root pruning and irrigation could be a promising practice to control tree size and secure a stable fruit yield in pear orchard....

Energy potential of fruit tree pruned biomass in Croatia

Energy Technology Data Exchange (ETDEWEB)

Bilandzija, N.; Voca, N.; Kricka, T.; Martin, A.; Jurisic, V.

2012-11-01

The world's most developed countries and the European Union (EU) deem that the renewable energy sources should partly substitute fossil fuels and become a bridge to the utilization of other energy sources of the future. This paper will present the possibility of using pruned biomass from fruit cultivars. It will also present the calculation of potential energy from the mentioned raw materials in order to determine the extent of replacement of non-renewable sources with these types of renewable energy. One of the results of the intensive fruit-growing process, in post pruning stage, is large amount of pruned biomass waste. Based on the calculated biomass (kg ha{sup 1}) from intensively grown woody fruit crops that are most grown in Croatia (apple, pear, apricots, peach and nectarine, sweet cherry, sour cherry, prune, walnut, hazelnut, almond, fig, grapevine, and olive) and the analysis of combustible (carbon 45.55-49.28%, hydrogen 5.91-6.83%, and sulphur 0.18-0.21%) and non-combustible matters (oxygen 43.34-46.6%, nitrogen 0.54-1.05%, moisture 3.65-8.83%, ashes 1.52-5.39%) with impact of lowering the biomass heating value (15.602-17.727 MJ kg{sup 1}), the energy potential of the pruned fruit biomass is calculated at 4.21 PJ. (Author) 31 refs.

7 CFR 52.3182 - Varietal types of dried prunes.

Science.gov (United States)

2010-01-01

... PROCESSED FOOD PRODUCTS 1 United States Standards for Grades of Dried Prunes Product Description, Varietal Types, Sizes, Grades § 52.3182 Varietal types of dried prunes. (a) Type I. French; or Robe; or a mixture of French and Robe. (b) Type II. Italian. (c) Type III. Imperial; or Sugar; or a mixture of Imperial...

PHENOLOGICAL CHARACTERISTICS OF GENOTYPES FROM CATTLEY GUAVA AND GUAVA TREES SUBMITTED TO FRUCTIFICATION PRUNING

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CINTIA APARECIDA BREMENKAMP

Full Text Available ABSTRACT Psidium cattleianum Sabine is a species from the Myrtaceae family that serves as an option for the native fruits cultivation, besides being considered a source of resistance to the Meloidogyne enterolobii nematode. Although cattley guava trees from this species produce flower buds in young branches, there are no reports of response to fructification pruning or phenological synchronism with the guava tree. The objective of this paper was the comparative evaluation of the genotype response of strawberry guava trees and guava cultivars to fructification pruning, thus, describing the phenology of both species under the same cultivation conditions. The experiment was conducted under an entirely randomized outline, in 7x2 factorial scheme, being evaluated seven genotypes (three from strawberry guava and four from guava trees, and with pruning performed in two seasons (May 2012 and March 2013, with three repetitions. Fructification pruning was executed by a lopping on all mature branches, from the last growth flow in the woody branch region. Were evaluated budding characteristics and fruit harvesting, as well as number of days from pruning to the observation of the phenological event. Cattley guava tree pruning stimulated fructification of all three genotypes after pruning done on May and two genotypes after the March’s pruning. There has been a sync between the guava cultivars’ flowering and both strawberry guava trees genotypes, when those were pruned on May.

Pruning Boltzmann networks and hidden Markov models

DEFF Research Database (Denmark)

Pedersen, Morten With; Stork, D.

1996-01-01

We present sensitivity-based pruning algorithms for general Boltzmann networks. Central to our methods is the efficient calculation of a second-order approximation to the true weight saliencies in a cross-entropy error. Building upon previous work which shows a formal correspondence between linear...... Boltzmann chains and hidden Markov models (HMMs), we argue that our method can be applied to HMMs as well. We illustrate pruning on Boltzmann zippers, which are equivalent to two HMMs with cross-connection links. We verify that our second-order approximation preserves the rank ordering of weight saliencies...

Síndrome de Prune Belly: Presentación de un caso y revisión de la literatura Prune Belly Syndrome: Case report and review

Directory of Open Access Journals (Sweden)

Albert Franz Guerrero

2010-04-01

Full Text Available Introducción: El síndrome de Prune Belly (SPB, también conocido como el síndrome de Eagle Barrett, se caracteriza por una triada de anomalías que incluye grados variables de hipoplasia de la musculatura abdominal, anomalías del tracto urinario y criptorquidia bilateral. Objetivo: Se describe el caso de un paciente masculino con Síndrome de Prune Belly y se realiza una revisión de la literatura sobre esta rara enfermedad. Conclusión: La característica arrugada del abdomen similar a una ciruela pasa, le da el nombre al síndrome. Además, puede estar asociado a alteraciones cardiovasculares, respiratorias, ortopédicas y gastrointestinales. Salud UIS 2010; 42: 78-85Introduction: Prune-belly syndrome, also known as Eagle-Barrett syndrome is characterized by a triad of anomalies that include varying degrees of abdominal musculature hypoplasia, urinary tract anomalies, and bilateral cryptorchidism. Objective: We describe the case of a male patient with Prune Belly Syndrome and we review the literature on this rare disease. Conclusions: The characteristic wrinkled, prune-like abdomen, gives the name to the syndrome. Can also be associated with cardiovascular, respiratory, orthopedic and gastrointestinal anomalies. Salud UIS 2010; 42: 78-85.

Pruning high-value Douglas-fir can reduce dwarf mistletoe severity and increase longevity in central Oregon

Science.gov (United States)

Maffei, Helen M; Filip, Gregory M; Gruelke, Nancy E; Oblinger, Brent W; Margolis, Ellis; Chadwick, Kristen L

2016-01-01

Mid- to very large-sized Douglas-fir (Pseudotsuga menzieseii var. menziesii) that were lightly- to moderately-infected by dwarf mistletoe (Arceuthobium douglasii) were analyzed over a 14-year period to evaluate whether mechanical pruning could eradicate mistletoe (or at least delay the onset of severe infection) without significantly affecting tree vitality and by inference, longevity. Immediate and longterm pruning effects on mistletoe infection severity were assessed by comparing pruned trees (n = 173) to unpruned trees (n = 55) with respect to: (1) percentage of trees with no visible infections 14 years post-pruning, (2) Broom Volume Rating (BVR), and (3) rate of BVR increase 14 years postpruning. Vitality/longevity (compared with unpruned trees) was assessed using six indicators: (1) tree survival, (2) the development of severe infections, (3) the development of dead tops, (4) tree-ring width indices, (5) Normalized Difference Vegetation Index (NDVI) from high-resolution multi-spectral imagery, and (6) live-crown ratio (LCR) and increment. Twenty-four percent of the pruned trees remained free of mistletoe 14 years post-pruning. Pruning is most likely to successfully eradicate mistletoe in lightly infected trees (BVR 1 or 2) without infected neighbors. Pruning significantly decreased mean BVR in the pruned versus the unpruned trees. However, the subsequent average rate of intensification (1.3–1.5 BVR per decade) was not affected, implying that a single pruning provides ~14 years respite in the progression of infection levels. Post-pruning infection intensification was slower on dominant and co-dominants than on intermediate or suppressed trees. The success of mistletoe eradication via pruning and need for follow-up pruning should be evaluated no sooner than 14 years after pruning to allow for the development of detectable brooms. Based on six indicators, foliage from witches brooms contribute little to long-term tree vitality since removal appears to have

Effect of Time and Level of Pruning on Vegetative Growth, Flowering, Yield, and Quality of Guava

DEFF Research Database (Denmark)

Adhikari, Shiva; Kandel, Tanka Prasad

2015-01-01

Poor quality fruit production in the rainy season and failure to manipulate production periods are common problems for guava production in India and Nepal. As a possible management to overcome these problems, a field experiment was conducted to understand the effect of time and level of pruning...... (%) of fruits increased with the increased level of pruning in both seasons irrespective of timing of pruning, but fruit acidity was not affected by both treatments. In conclusion, pruning plants at a 20 cm pruning level in early May was the most effective management to reduce yield in the rainy season...... on growth, flowering, yield, and quality of guava. An experiment was laid out with split-pot design allocating three pruning times (mid-April, early May, and mid-May) and four pruning levels (0-, 10-, 20-, and 30-cm tip removal) with three replications in each treatment. Increased level of pruning in early...

Regulating mineralization rates of Tithonia diversifolia and Lantana camara prunings to improve phosphorus availability in calcareous soils

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Y. Nuraini

2014-01-01

Full Text Available The effect of mixing of Tithonia diversifolia and Lantana camara prunings to improve synchronization between P released from the prunings with crop demand for P was studied in a laboratory and in a glasshouse. Tithonia diversifolia prunings (Td, Lantana camara prunings (Lc, and farmyard manure (Pk were thoroughly mixed with the proportion (% of dry weight of; 25Td +75 Lc ; 50Td +50 Lc ; 75Td +25 Lc ; 90Lc +10 Pk ; 45Td +45 +10 Lc Pk ; 100Td and 100Lc, and then mixed with 100 g of air-dried soil with a rate equivalent to 100 kg P / ha. Results of the study showed that the pruning mixtures decomposed and mineralized faster than that of Lantana camara pruning only, but slower than that of Tithonia diversifolia pruning only. The amount of P released from the pruning mixtures increased with increasing proportion of Tithonia diversifolia pruning in the mixtures. Increasing proportion of Tithonia diversifolia pruning in the mixture applied to the soil increased the amount of P taken up by maize.

Síndrome de prune belly: presentación de caso Prune belly syndrome: a case report

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María Elena Toledo Lamela

2008-03-01

Full Text Available El síndrome de prune belly es una rara enfermedad congénita de causa desconocida. Se presenta el caso de un recién nacido a término, del sexo masculino y de un día de nacido, que fue remitido al servicio de urología pediátrica por presentar ausencia de los músculos de la pared anterior del abdomen (rectos anteriores, criptorquidia bilateral y gran globo vesical. A partir de los hallazgos del examen físico se planteó el diagnóstico de síndrome de prune belly. Se encontraron anomalías asociadas como escoliosis y agenesia del pie derecho. En el estudio radiológico del tracto urinario se confirmaron malformaciones congénitas como valva de uretra posterior y megavejiga con uretero-hidronefrosis bilateral. Los análisis de laboratorio confirmaron la afectación de la función renal y una infección urinaria asociada. Se practicó una cistostomía a cielo abierto. El paciente falleció a los 10 días a causa de las complicaciones de la insuficiencia renalThe prune belly syndrome is a congenital rare disease of unknown origin. The case of a one-day-old full- term male newborn infant that was referred to the pediatric urology service for presenting absence of the muscles of the anterior abdomen wall (anterior rectus muscle, bilateral cryptochordism and big vesical globe, was presented. Starting from the findings of the physical examination, the prune belly syndrome was diagnosed. Associated abnormalities such as scoliosis and agenesis of the right leg were found. In the radiological study of the urinary tract, congenital malformations as posterior urethra valve and megabladder with bilateral ureterohydronephrosis were confirmed. The lab tests corroborated the affectation of the renal function and an associated urinary infection. The patient died at 10 days as a result of the complications of renal failure

Unusual presentation of prune belly syndrome: a case report.

Science.gov (United States)

Demisse, Abayneh Girma; Berhanu, Ashenafi; Tadesse, Temesgen

2017-12-04

Prune belly syndrome is a rare congenital malformation of unknown etiology, with the following triad of findings: abdominal muscle wall weakness, undescended testes, and urinary tract abnormalities. In most cases, detection of prune belly syndrome occurs during neonatal or infancy period. In this case report, we describe a 12-year-old boy from Ethiopia with the triad of findings of prune belly syndrome along with skeletal malformations. We are unaware of any previous report of prune belly syndrome in Ethiopia. A 12-year-old Amhara boy from the Northwest Gondar Amhara regional state presented to our referral hospital with a complaint of swelling over his left flank for the past 3 months. Maternal pregnancy course and medical history were noncontributory, and he had an attended birth at a health center. He has seven siblings, none of whom had similar symptoms. On examination he had a distended abdomen, asymmetric with bulging left flank, visible horizontal line, upward umbilical slit, and absent rectus abdominis muscles. His abdomen was soft with a tender cystic, bimanually palpable mass on the left flank measuring 13 × 11 cm. Both testes were undescended and he also has developmental dysplasia of the hips. An abdominal ultrasound revealed a large cystic mass in his left kidney area with echo debris and a hip X-ray showed bilateral developmental dysplasia of the hip. Intraoperative findings were cystic left kidney, both testes were intraperitoneal, tortuous left renal vein, enlarged bladder reaching above umbilicus, and left megaureter. bilateral orchidectomy and left nephrectomy were done. He was given intravenously administered antibiotics for treatment of pyelonephritis and discharged home with an appointment for follow up and possible abdominoplasty. In the current report delayed presentation contributed to testicular atrophy and decision for orchidectomy. Furthermore, he will be at potential risk for sex hormone abnormality. Therefore, diagnosis of prune

7 CFR 993.5 - Prunes.

Science.gov (United States)

2010-01-01

... the Food Technology Division, College of Agriculture, University of California, for the specialty pack... 7 Agriculture 8 2010-01-01 2010-01-01 false Prunes. 993.5 Section 993.5 Agriculture Regulations of the Department of Agriculture (Continued) AGRICULTURAL MARKETING SERVICE (Marketing Agreements and...

Pruning management of Chardonnay grapevines at high altitude in Brazilian southeast

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Tania dos Reis Mendonça

2016-03-01

Full Text Available ABSTRACT The agronomical responses of Chardonnay, a variety indicated for sparkling wine production, is influenced by the vineyard management and the edaphoclimatic conditions of the region. The objective of this study was to evaluate the effects of two pruning types (Royat and double Guyot on vegetative and reproductive development of Chardonnay vine growing at high altitude in the Brazilian southeastern region. The experiment was carried out in a commercial vineyard located at 1,280 m of altitude in Divinolândia, São Paulo State, Brazil. The Chardonnay vines (clone 96, grafted onto 1103 Paulsen rootstock and trained in a vertical shoot positioning trellis system, were assessed. Vegetative vigor, bud fruitfulness, production and physicochemical composition of grapes were evaluated during 2014 and 2015 growing seasons. The Royat pruning induced higher vegetative vigor and increased the bud fruitfulness, the cluster number and the productivity of Chardonnay vine when compared to Guyot pruning. Even though the increase on yield was observed, there was no effect of pruning type on grape final quality. Therefore, the choice of pruning method in function of variety genetic characteristics and their interaction with environment can optimize the vineyard profitability. In the Brazilian southeast, the Royat system is the most suitable one to grow Chardonnay for sparkling wines production.

Multipl Konjenital Anomalilerin Eşlik Ettiği Bir Prune-Belly Sendromu Olgusu

OpenAIRE

YILDIZ, L.; AYDIN, O.; BORAN, Ç.; KANDEMİR, B.; ALPER, T.

2010-01-01

A Case of Prune-Belly Syndrome Associated with Multiple Congenital Anomalies Abdominal muscle deficiency, urinary tract abnormalities and cryptoorchidism are the three major features of the Prune-belly syndrome. Massive acites and intraabdominal urine accumulation had produced abdominal wall atrophy. A functional or anatomic urethral obstruction may detect on cases. As an addition classic triad of Prune-belly syndrome our case has polydactily, cleft lip and palate. Chromosomal analysis cou...

Source-Sink Relations in Fruits VII. Effects of Pruning in Sour Cherry and Plum

DEFF Research Database (Denmark)

Toldam-Andersen, Torben Bo; Hansen, P.

1993-01-01

Sour cherries cv. 'Stevnsbær' and plums cv. 'Victoria' were heavily pruned in 1987. Fruit samples were collected during the growing season and concentrations of different quality components were determined. Pruning resulted in a small increase in fruit size, the effect being greater on the older...... trees (sour cherries) or at the lower crop load (plum). Additionally, pruning decreased the con­centrations of total and soluble dry matter and of anthocya­nins ('Stevnsbær'), while titratable acids showed an increas­ing tendency. The effects of pruning are discussed based on influences on root...

Influence of coffee pruning on the severity of frost damage

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Armando Androcioli Filho

2000-01-01

Full Text Available Frost damages in a field experiment of pruning types and systems for the cultivars of Coffea arabica Catuaí and Mundo Novo, were evaluated at Londrina (23º22’S, 52º10´W, State of Parana, southern Brazil, during the winter of 1990 and 1994. Pruning types evaluated were ‘esqueletamento’ (cutting off all plagiotropic branches at 20-30 cm from the orthotropic branch, ‘decote’ (cutting off the orthotropic branch at 1.5 m and 2.0 m above ground and ‘recepa’ (cutting off the orthotropic branch at 0.8 m above ground, performed on all rows and on alternate rows, and on different sections of the plant. Results indicated that frost damage could increase according to the type and height of pruning. The pruning type ‘esqueletamento’ and prunings at higher levels were more suitable for regions with frost risk. Under severe frost condition, pruning type did not affect the damage in anyone of the treatments evaluated.Foram avaliados os danos causados pelas geadas ocorridas em 1990 e 1994 em cafeeiros de duas cultivares de Coffea arabica L., Catuaí e Mundo Novo, conduzidos em Londrina-PR. Os tipos e sistemas de podas aplicados foram o esqueletamento a 20-30 cm do tronco, decote a 1,5 m e 2,0 m de altura e recepa a 0,80 m de altura. As podas foram feitas em área total e em linhas alternadas e em diferentes partes da planta. Os dados obtidos indicaram que os danos por geada podem ser intensificados em função do tipo e altura da poda. A poda do tipo esqueletamento e as podas altas são mais indicadas para o manejo das lavouras nas regiões mais sujeitas ao fenômeno de geada. No caso de geada severa, todos os cafeeiros foram afetados, independente do tipo de poda.

Partial prune belly syndrome: A rare case report

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Aditya Pratap Singh

2017-01-01

Full Text Available Prune belly syndrome (PBS is characterized by deficient development of abdominal muscles that causes the skin of the abdomen to wrinkle like a prune, bilateral cryptorchidism, abnormalities of the urinary tract. The etiology of PBS is unclear and possible familial genetic inheritance was reported in some of the studies. We are presenting here a case with the absence of the muscle in the right side of the abdomen as hernia, thinning of the muscle on left side with bilateral cryptorchidism, and abnormalities of the urinary tract. It is the partial presentation of the PBS.

Immunocapture reverse transcription-polymerase chain reaction combined with nested PCR greatly increases the detection of Prunus necrotic ring spot virus in the peach.

Science.gov (United States)

Helguera, P R; Taborda, R; Docampo, D M; Ducasse, D A

2001-06-01

A detection system based on nested PCR after IC-RT-PCR (IC-RT-PCR-Nested PCR) was developed to improve indexing of Prunus necrotic ringspot virus in peach trees. Inhibitory effects and inconsistencies of the standard IC-RT-PCR were overcome by this approach. IC-RT-PCR-Nested PCR improved detection by three orders of magnitude compared with DAS-ELISA for the detection of PNRSV in leaves. Several different tissues were evaluated and equally consistent results were observed. The main advantages of the method are its consistency, high sensitivity and easy application in quarantine programs.

Pruning for crop regulation in high density guava (Psidium guajava L.) plantation

Energy Technology Data Exchange (ETDEWEB)

Thakre, M.; Lal, S.; Uniyal, S.; Goswami, A.K. Prakash. P.

2016-11-01

High density management and crop regulation are two important aspects in guava (Psidium guajava L.) production. Therefore, to find out the economic way of managing high density planting and crop regulation, the present work was carried out on 6-year-old guava trees of cv. Pant Prabhat under double-hedge row system of planting during 2009-10 and 2010-11. Seven different forms of pruning [FBT: flower bud thinning by hand, FBTT: flower bud thinning by hand followed by removal of terminal one leaf pair, RLFO: removal of leaves and flower buds by hand, retaining one leaf pair at the top, RLF: removal of all leaves and flowers by hand, OLPS: one leaf pair shoot pruning, FSP: full shoot pruning, OLPF: one leaf pair pruning of fruited shoots only] were studied along with control (C).Minimum annual increase in tree volume (6.764 m3) was recorded with the treatment OLPF, which was 2.31 times less than the control (15.682 m3). Highest yield during winter season (55.30 kg/tree) and total yield (59.87 kg/tree) was obtained from treatment OLPF. One leaf pair pruning of fruited shoots only (OLPF) was also found profitable among other treatments by recording cost:benefit ratio of 1:2.96. This treatment also recorded the highest return distributed in rainy as well as in winter season. On the basis of findings it can be concluded that one leaf pair pruning of fruited shoots only is suitable for profitable high density management as well as crop regulation of guava in farmer friendly manner. (Author)

EVALUATION OF TEMPORALVARIATIONS IN MOISTURE AND CALORIFIC VALUE OF VINE AND OLIVE PRUNING

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Pier Riccardo Porceddu

2012-06-01

Full Text Available In Italy arboreal crops, in particular vine and olive, cover a surface area of around 19.6×109 m2 from which about 4.6×109 kg of pruning are cut. These by-products are currently ploughed into the soil or else harvested and burned in open fields. On the other hand such materials would be more useful as an energy source. If these materials are to be used as fuel, it is important to know their calorific value. The calorific value is significantly influenced by the moisture content of wood. This work has evaluated the changes in moisture content and calorific value with time for different harvesting and storage systems of vine and olive pruning. The observed decrease in the moisture content of the vine and olive pruning depended on the storage system utilized, in particular on the product compression ratio and air circulation. Some differences were observed between the results obtained for vine and olive pruning. The time required for these materials to obtain their best energetic performance was identified at 32 weeks from their harvesting. Harvesting with balers and forwarding costs are about 6.21×10-2 €/kg for vine pruning and 4.64×10-2 €/kg for olive pruning. They are very similar to the price currently offered for energy biomass in Italy (5.00×10-2 €/kg. While the cost actually paid to plough pruning into the soil amounts to about 2.50×10-2 €/kg. Therefore the energy chain encourages a cost-and-benefit analysis.

Effect of main stem pruning and fruit thinning on the postharvest conservation of melon

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Rafaella M. de A. Ferreira

Full Text Available ABSTRACT Main stem pruning and fruit thinning are cultivation practices that can influence the yield and quality of the fruit. This study aimed to evaluate the effects of main stem pruning and fruit thinning on the postharvest conservation of Charentais Banzai melons. In the field, the plants were subjected to main stem pruning and fruit thinning, with harvesting done 74 days after sowing (DAS. The fruits were transported to the laboratory where they were cleaned, characterized, and stored in a cold chamber (5 °C and 90 ± 2% RH. In the field, the experiment was designed as a split-plot using a 2 × 4 + 1 factorial design, with two levels of main stem pruning (pruned and unpruned, four levels of thinning times (42, 45, 48, and 51 DAS, and a control (unpruned and unthinned. The sub-plot consisted of storage times (0, 7, 14, 21, and 28 days, with four blocks. The preharvest treatments did not significantly influence the production characteristics of the Banzai hybrid. The treatment without pruning increased the titratable acidity of fruit, and the thinning at 51 days after sowing (DAS reduced soluble sugars. There was a decline in pulp firmness, titratable acidity, reducing sugars, and an increase in soluble solids, total soluble sugar, and non-reducing sugars during storage. Pruning the main melon stem reduced the weight loss of the fruit after 28 days of storage.

Effect of Shoot Pruning and Flower Thinning on Quality and Quantity of Semi-Determinate Tomato (Lycopersicon esculentum Mill.

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Abdolali HESAMI

2012-02-01

Full Text Available There are many constraints of space, light and availability of fruits to harvest in tomatoes greenhouse. Therefore, two experiments were carried out to determine the effect of shoot pruning and flower thinning on quality and quantity of fruits of semi-determinate tomato in a greenhouse of the Faculty of Agriculture and Natural Resources, Persian Gulf University of Bushehr. Experimental design was randomized complete block designs in which the effect of shoot pruning (single branch pruning, double branch pruning, pyramidal pruning and control or flower thinning (Cluster with 4 and 5 remained flowers and control were studied separately. Results showed that, leaf area and plants yield were higher in treatments which were pruned than control. Yields from pyramidal pruning and cluster thinning with 5 remaining flowers were significantly higher than other treatments. On the other hand, qualitative study identified that pyramidal pruning increases vitamin C in fruits, but had no significant effect on total soluble solids.

Cane pruning on Chardonnay grapevine in the high-altitude regions of Southern Brazil

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Filho José Luiz Marcon

2016-01-01

Full Text Available High-altitude regions of southern Brazil, located above 900 m above sea level, the cordon training with spur pruning is widely used because of easier application. In these regions, Chardonnay wine grape shows potential to produce quality wines, however, in commercial vineyards, the training system used has not provided productivities that makes economically viable the cultivation of this variety. Given this, the present study aimed to evaluate the effect of different cane-pruning systems on the vegetative, productive and enological potential of Chardonnay grapevines grown in the high-altitude region of Southern Brazil. The experiment was conducted in a commercial Chardonnay vineyard, located in São Joaquim – Santa Catarina State (28o17 ′39”S and 49∘ 55′56” W, to 1230 m a.s.l during 2015 and 2016 vintages. Chardonnay vines (grafted on 1103 Paulsen were planted in 2010, with a 3.0 m (row × 1.0 m (vine spacing. The treatments consisted of different cane-pruning systems: Cordon spur-pruning (control; Sylvoz; Cazenave; Capovolto; single Guyot and double Guyot. Pruning was performed in August of each year when the buds were in the green tip developmental stage. Data was analyzed by Scott Knott test (p < 0.05 following a randomized block design with four replicates, each consisting of 12 vines per plot. We observed higher yield in the Cazenave and double Guyot training system with three and two more tons of grapes than spur-pruning respectively. The bud fertility was higher in plants trained in double Guyot. Vines spur-pruned showed higher relation of leaf area: production, with values above 100 cm2 g−1 grape at 2016 vintage. Commercial maturity of grapes (soluble solids, acidity and polyphenols did not differ among training systems studied. The results suggest that cane-pruning systems could be an alternative to increase production efficiency of Chardonnay in high-altitude region of southern Brazil.

Grafting, pruning, and the antipodal map on measured laminations

OpenAIRE

Dumas, David

2006-01-01

Grafting a measured lamination on a hyperbolic surface defines a self-map of Teichmuller space, which is a homeomorphism by a result of Scannell and Wolf. In this paper we study the large-scale behavior of pruning, which is the inverse of grafting. Specifically, for each conformal structure $X \\in \\T(S)$, pruning $X$ gives a map $\\ML(S) \\to \\T(S)$. We show that this map extends to the Thurston compactification of $\\T(S)$, and that its boundary values are the natural antipodal involution relat...

Loss of mTOR-dependent macroautophagy causes autistic-like synaptic pruning deficits.

Science.gov (United States)

Tang, Guomei; Gudsnuk, Kathryn; Kuo, Sheng-Han; Cotrina, Marisa L; Rosoklija, Gorazd; Sosunov, Alexander; Sonders, Mark S; Kanter, Ellen; Castagna, Candace; Yamamoto, Ai; Yue, Zhenyu; Arancio, Ottavio; Peterson, Bradley S; Champagne, Frances; Dwork, Andrew J; Goldman, James; Sulzer, David

2014-09-03

Developmental alterations of excitatory synapses are implicated in autism spectrum disorders (ASDs). Here, we report increased dendritic spine density with reduced developmental spine pruning in layer V pyramidal neurons in postmortem ASD temporal lobe. These spine deficits correlate with hyperactivated mTOR and impaired autophagy. In Tsc2 ± ASD mice where mTOR is constitutively overactive, we observed postnatal spine pruning defects, blockade of autophagy, and ASD-like social behaviors. The mTOR inhibitor rapamycin corrected ASD-like behaviors and spine pruning defects in Tsc2 ± mice, but not in Atg7(CKO) neuronal autophagy-deficient mice or Tsc2 ± :Atg7(CKO) double mutants. Neuronal autophagy furthermore enabled spine elimination with no effects on spine formation. Our findings suggest that mTOR-regulated autophagy is required for developmental spine pruning, and activation of neuronal autophagy corrects synaptic pathology and social behavior deficits in ASD models with hyperactivated mTOR. Copyright © 2014 Elsevier Inc. All rights reserved.

Pruning for crop regulation in high density guava (Psidium guajava L. plantation

Directory of Open Access Journals (Sweden)

Madhubala Thakre

2016-06-01

Full Text Available High density management and crop regulation are two important aspects in guava (Psidium guajava L. production. Therefore, to find out the economic way of managing high density planting and crop regulation, the present work was carried out on 6-year-old guava trees of cv. Pant Prabhat under double-hedge row system of planting during 2009-10 and 2010-11. Seven different forms of pruning [FBT: flower bud thinning by hand, FBTT: flower bud thinning by hand followed by removal of terminal one leaf pair, RLFO: removal of leaves and flower buds by hand, retaining one leaf pair at the top, RLF: removal of all leaves and flowers by hand, OLPS: one leaf pair shoot pruning, FSP: full shoot pruning, OLPF: one leaf pair pruning of fruited shoots only] were studied along with control (C.Minimum annual increase in tree volume (6.764 m3 was recorded with the treatment OLPF, which was 2.31 times less than the control (15.682 m3. Highest yield during winter season (55.30 kg/tree and total yield (59.87 kg/tree was obtained from treatment OLPF. One leaf pair pruning of fruited shoots only (OLPF was also found profitable among other treatments by recording cost:benefit ratio of 1:2.96. This treatment also recorded the highest return distributed in rainy as well as in winter season. On the basis of findings it can be concluded that one leaf pair pruning of fruited shoots only is suitable for profitable high density management as well as crop regulation of guava in farmer friendly manner.

Factors affecting branch wound occlusion and associated decay following pruning – a case study with wild cherry (Prunus avium L.

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Jonathan Sheppard

2016-11-01

Full Text Available Pruning wild cherry (Prunus avium L. is a common silvicultural practice carried out to produce valuable timber at a veneer wood quality. Sub-optimal pruning treatments can permit un-occluded pruning wounds to develop devaluing decay. The aim of this study is to determine relevant branch, tree and pruning characteristics affecting the occlusion process of pruning wounds. Important factors influencing occlusion time for an optimised pruning treatment for valuable timber production utilising wild cherry are derived. 85 artificially pruned branches originating from ten wild cherry trees were retrospectively analysed. Branch stub length, branch diameter and radial stem increment during occlusion were found to be significant predictors for occlusion time. From the results it could be concluded that for the long term success of artificial pruning of wild cherry it is crucial to (i keep branch stubs short (while avoiding damage to the branch collar, (ii to enable the tree to maintain significant radial growth after pruning, (iii to avoid large pruning wounds (>2.5 cm by removing steeply angled and fast growing branches at an early stage.

Yield and crop cycle time of peaches cultivated in subtropical climates and subjected to different pruning times

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Rafael Augusto Ferraz

2015-12-01

Full Text Available The cultivation of peaches in regions of subtropical and tropical climate is currently achieved through a set of practices such as using less demanding cultivars in cold conditions, applying plant growth regulators to break dormancy, and performing specific pruning, like production and renewal pruning. Research on the climate adaptation of cultivars is of great importance in establishing a crop in a given region. Therefore, the objective of this study was to evaluate the agronomic performance of three cultivars subjected to different production pruning times in Botucatu/SP, where 2-year old peach trees were evaluated, grown at a spacing of 6.0 x 4.0 meters. The experimental design was a split plot design with four blocks, using the cultivars Douradão, BRS Kampai and BRS Rubimel, and the subplots corresponded to pruning times in May, June, July and August. Ten plants were used per plot, with the four central plants considered useful and the remaining considered as margins. Pruning in June and July showed the best results in terms of percentage of fruit set and production. The cultivar BRS Rubimel showed the best percentage of fruit set when pruned in June (44.96%, and best fruit production when pruned in July (18.7 kg plant-1. Pruning in May anticipated the harvest of cultivar BRS Rubimel by 13 days whereas pruning carried out in July and August provided late harvests for cultivars Douradão and BRS Kampai.

Density based pruning for identification of differentially expressed genes from microarray data

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Xu Jia

2010-11-01

Full Text Available Abstract Motivation Identification of differentially expressed genes from microarray datasets is one of the most important analyses for microarray data mining. Popular algorithms such as statistical t-test rank genes based on a single statistics. The false positive rate of these methods can be improved by considering other features of differentially expressed genes. Results We proposed a pattern recognition strategy for identifying differentially expressed genes. Genes are mapped to a two dimension feature space composed of average difference of gene expression and average expression levels. A density based pruning algorithm (DB Pruning is developed to screen out potential differentially expressed genes usually located in the sparse boundary region. Biases of popular algorithms for identifying differentially expressed genes are visually characterized. Experiments on 17 datasets from Gene Omnibus Database (GEO with experimentally verified differentially expressed genes showed that DB pruning can significantly improve the prediction accuracy of popular identification algorithms such as t-test, rank product, and fold change. Conclusions Density based pruning of non-differentially expressed genes is an effective method for enhancing statistical testing based algorithms for identifying differentially expressed genes. It improves t-test, rank product, and fold change by 11% to 50% in the numbers of identified true differentially expressed genes. The source code of DB pruning is freely available on our website http://mleg.cse.sc.edu/degprune

Prune belly syndrome: A report of 15 cases from Sudan.

Science.gov (United States)

Kheir, Abdelmoneim E M; Ali, Eltigani M A; Medani, Safaa A; Maaty, Huda S

2017-01-01

Prune belly syndrome is a rare congenital malformation of unknown aetiology, composed of a triad of deficient abdominal wall muscle, cryptorchidism and urinary tract anomalies. The majority of patients have associated pulmonary, skeletal, cardiac, and gastrointestinal defects. This was a prospective, case finding study that was conducted in the main paediatric hospitals in Khartoum state, during the period December 2015 to September 2016. A total of 15 patients with prune belly syndrome were collected. Patients' characteristics were noted including socio-demographic data, laboratory and radiological investigations and any medical or surgical intervention. There were 12 males and 3 females with a male to female ratio of 4:1. Most of the patients (80%) had hydronephrosis and hydroureter. The study revealed that 60% of the patients had associated anomalies, there were 4 (26.6%) with cardiac defects, 3 (20%) with orthopaedic defects one patient with small bowel volvulus and one patient with cleft lip. 6 (40%) patients received medical intervention and 8 (53%) patients underwent surgical procedures. At the last follow up visit, 2 (13.4%) patients had normal renal function tests, 8 (53.3%) ended with chronic kidney disease, and 5 died with a mortality rate of 33.3%. Prune belly syndrome is a rare entity with wide variability in severity and clinical manifestations. The mortality in prune belly syndrome remains high despite medical and surgical interventions.

Dynamic abdominoplasty for the treatment of prune belly syndrome.

Science.gov (United States)

Fearon, Jeffrey A; Varkarakis, George

2012-09-01

The deficient abdominal wall musculature associated with prune belly syndrome often results in numerous functional disabilities, including diminished cough, impaired bladder and bowel function, and poor posture and balance. Traditional abdominoplasties focus on static fascial excisions or plications. The authors sought to assess their preliminary experience with a new abdominoplasty technique that incorporates standard fascial tightening with bilateral pedicled rectus femoris muscle transfers. This case series review included all patients treated with prune belly syndrome at the authors' center. Physical presentation, operative procedures, hospitalization, complications, and postoperative functional status were assessed, and a systematic analysis of published surgical series was performed. Over a 16-year period, the authors treated 13 patients with prune belly syndrome. All underwent standard "vest over pants" fascial plications, with 11 of 13 undergoing additional rectus femoris muscle transpositions at a mean age of 4 years (range, 12 months to 13 years). Hospitalization averaged 9.3 days, and the average follow-up was over 1.5 years. The authors identified three minor complications (chylous leak, fungal urinary tract infection, and partial umbilical necrosis), yielding a complication rate similar to those identified in our systematic analysis of published standard abdominoplasties. Postoperatively, all transposed muscles were palpably functional, one patient was successfully weaned off a ventilator, and all demonstrated improvements with balance and ambulation. The authors' preliminary review suggests that this new procedure, which supplements the standard prune belly abdominoplasty with bilateral rectus femoris transposition flaps, is not associated with substantially higher complication rates yet does appear to have the potential to provide functional improvements.

Evaluation of soil carbon pools after the addition of prunings in subtropical orchards placed in terraces

Science.gov (United States)

Márquez San Emeterio, Layla; Martín Reyes, Marino Pedro; Ortiz Bernad, Irene; Fernández Ondoño, Emilia; Sierra Aragón, Manuel

2017-04-01

The amount of carbon that can be stored in a soil depends on many factors, such as the type of soil, the chemical composition of plant rests and the climate, and is also highly affected by land use and soil management. Agricultural ecosystems are proved to absorb a large amount of CO2 from the atmosphere through several sustainable management practices. In addition, organic materials such as leaves, grass, prunings, etc., comprise a significant type of agricultural practices as a result of waste recycling. The aim of this research was to evaluate the effects of the addition of different organic prunings on the potential for carbon sequestration in agricultural soils placed in terraces. Three subtropical orchards were sampled in Almuñécar (Granada, S Spain): mango (Mangifera indica L.), avocado (Persea americana Mill.) and cherimoya (Annonacherimola Mill.). The predominant climate is Subtropical Mediterranean and the soil is an Eutric Anthrosol. The experimental design consisted in the application of prunings from avocado, cherimoya and mango trees, placed on the surface soil underneath their correspondent trees, as well as garden prunings from the green areas surrounding the town center on the surface soils under the three orchard trees. Control experiences without the addition of prunings were also evaluated. These experiences were followed for three years. Soil samples were taken at4 cm depth. They were dried for 3-4 days and then sieved (<2 mm).Total soil organic C, water-soluble soil organic C, mineral-associated organic C and non-oxidable C were analyzed and expressed as carbon pools (Mg C ha-1for total soil organic C, or Kg C ha-1for the others). The results showed an increase of all organic carbon pools in all pruning treatments compared to the control experiences. Differences in total organic carbon pool were statistically significant between soils under avocado prunings and their control soil, and between soils under garden prunings with cherimoya and

An Integrated Pruning Criterion for Ensemble Learning Based on Classification Accuracy and Diversity

DEFF Research Database (Denmark)

Fu, Bin; Wang, Zhihai; Pan, Rong

2013-01-01

be further considered while designing a pruning criterion is presented, and then an effective definition of diversity is proposed. The experimental results have validated that the given pruning criterion could single out the subset of classifiers that show better performance in the process of hill...

The potential of legume tree prunings as organic matters for improving phosphorus availability in an acid soil

Directory of Open Access Journals (Sweden)

I Wahyudi

2015-01-01

Full Text Available A study that was aimed to elucidate roles of Gliricidia sepium and Tithonia diversifolia prunings and their extracted humic and fulvic acids on improving phosphorus availability and decreasing aluminum concentration in an Ultisol was conducted in a glasshouse. Thirteen treatments consisting of two prunings, six rates of pruning application (5, 7.5, 10, 20, 40 and 80 t/ha and one control (no added prunings were arranged in a randomized block design with four replicates. Each mixture of prunings and soil was placed in a pot containing 8 kg of soil and maize of Srikandi cultivar was grown on it for 45 days. At harvest, soil pH, P content and aluminium concentration were measured. Results of the glasshouse experiment showed that application of Gliricidia and Tithonia prunings significantly increased soil pH, reduced Alo concentration, increased Alp content, increased P availability, and increased P taken up by maize grown for 45 days. The optimum rate of both Gliricidia and Tithonia pruning should be 40 t/ha. However, at the same rate, optimum production gained by Tithonia would be higher than that of Gliricidia.

Spindle-F Is the Central Mediator of Ik2 Kinase-Dependent Dendrite Pruning in Drosophila Sensory Neurons.

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Tzu Lin

2015-11-01

Full Text Available During development, certain Drosophila sensory neurons undergo dendrite pruning that selectively eliminates their dendrites but leaves the axons intact. How these neurons regulate pruning activity in the dendrites remains unknown. Here, we identify a coiled-coil protein Spindle-F (Spn-F that is required for dendrite pruning in Drosophila sensory neurons. Spn-F acts downstream of IKK-related kinase Ik2 in the same pathway for dendrite pruning. Spn-F exhibits a punctate pattern in larval neurons, whereas these Spn-F puncta become redistributed in pupal neurons, a step that is essential for dendrite pruning. The redistribution of Spn-F from puncta in pupal neurons requires the phosphorylation of Spn-F by Ik2 kinase to decrease Spn-F self-association, and depends on the function of microtubule motor dynein complex. Spn-F is a key component to link Ik2 kinase to dynein motor complex, and the formation of Ik2/Spn-F/dynein complex is critical for Spn-F redistribution and for dendrite pruning. Our findings reveal a novel regulatory mechanism for dendrite pruning achieved by temporal activation of Ik2 kinase and dynein-mediated redistribution of Ik2/Spn-F complex in neurons.

Evaluation of biocontrol agents for grapevine pruning wound protection against trunk pathogen infection.

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Charl KOTZE

2011-12-01

Full Text Available Trunk diseases of grapevine are caused by numerous pathogens, including Eutypa lata, Phaeomoniella chlamydospora, and species of Botryosphaeriaceae (incl. Botryosphaeria and aggregate genera, Phomopsis and Phaeoacremonium. Since infections occur mainly through pruning wounds, that have been shown by previous research to stay susceptible for up to 16 weeks after pruning, long-term pruning wound protection is required for prevention of infection. This study evaluated several biocontrol agents against a range of trunk disease pathogens in dual plate laboratory trials to determine macroscopic and microscopic interactions. The biocontrol agents had a substantial effect on all the pathogens, with a wide range of macroscopic and microscopic interactions observed. The best performing biocontrol agents were tested in two field trials. Fresh pruning wounds were treated with benomyl, Trichoderma products (Biotricho®, Vinevax® and ECO 77® and isolates (USPP-T1 and -T2, identified as T. atroviride and Bacillus subtilis. Seven days after treatment the pruning wounds were inoculated by spraying with spore suspensions of Neofusicoccum australe, N. parvum, Diplodia seriata, Lasiodiplodia theobromae, Eutypa lata, Phaeomoniella chlamydospora or Phomopsis viticola. Eight months after inoculation, the treatments were evaluated by isolation onto potato dextrose agar. The efficacy of the biocontrol agents was in most cases similar or superior to that observed for benomyl. Isolate USPP-T1, in particular, was very effective, reducing incidence of Ph. viticola, E. lata, Pa. chlamydospora, N. australe, N. parvum, D. seriata and L. theobromae by 69, 76, 77, 78, 80, 85 and 92%, respectively. This is the first report of biological protection of grapevine pruning wounds against this group of grapevine trunk disease pathogens.

It's not All Doom and Gloom: Prune Belly Syndrome Associated with VACTERL.

Science.gov (United States)

Awad, Karim; Lall, Anupam

2016-01-01

Prune belly syndrome is a rare abnormality; its association with VACTERL is even rarer. This association has been reported in literature a few times since first reported in 1993 and so far the majority have either been stillbirths or died shortly after birth. We present a case of Prune belly syndrome associated with VACTERL who is now one year old.

Congenital megalourethra in 2 weeks old boy associated with Prune-Belly syndrome

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Lawal Barau Abdullahi

2015-02-01

Full Text Available The megalourethra is a rare congenital anomaly of the penile urethra. It is characterized by the congenital absence of the corpus spongiosum and/or corpus cavernosum. It is especially common associated with Prune-Belly syndrome, and with upper tract abnormalities. We present a 2 weeks old boy with congenital megalourethra because of its association with the Prune-Belly syndrome.

Radiation processing of fruits: application to strawberries and prunes

International Nuclear Information System (INIS)

Levillain, M.

1986-10-01

Extending the shelf-life of fresh fruit by means of low-dose irradiation (radurization) is not a new idea: experiments in that field started in the early sixties. These experiments have actually proved that, in some cases, irradiation can achieve shelf-life extension, either through a delay in ripening (bananas), or through rot inhibition (soft cherries, apricots, tomatoes, strawberries). Alas, they have also highlighted the intolerance showed by a number of fruits when radurized: irradiation is apt to have them ripen more rapidly (peaches, nectarines) or to soften them too much (pears, table grapes, oranges, apples, plums, grapefruit, melons, honeydew melons). Even in those cases where irradiation results in a benefit, this benefit varies depending on the variety of fruit involved, as can be seen from a deep survey of the irradiation of strawberries. Preservation of dehydrated fruit is a different matter. Prunes, for instance, would be contamined by molds, wasn't it for the addition of sorbic acid during the fabrication process. Ionization of prunes can allow producers to avoid the use of a chemical, and to keep the prunes at a greater degree of humidity [fr

Influence of coffee pruning on the severity of frost damage

OpenAIRE

Androcioli Filho,Armando; Caramori,Paulo Henrique

2000-01-01

Frost damages in a field experiment of pruning types and systems for the cultivars of Coffea arabica Catuaí and Mundo Novo, were evaluated at Londrina (23º22’S, 52º10´W), State of Parana, southern Brazil, during the winter of 1990 and 1994. Pruning types evaluated were ‘esqueletamento’ (cutting off all plagiotropic branches at 20-30 cm from the orthotropic branch), ‘decote’ (cutting off the orthotropic branch at 1.5 m and 2.0 m above ground) and ‘recepa’ (cutting off the orthotropic branch at...

21 CFR 145.190 - Canned prunes.

Science.gov (United States)

2010-04-01

... of a mixture of brown sugar and honey, an appropriate statement would be “___ sirup of brown sugar... 21 Food and Drugs 2 2010-04-01 2010-04-01 false Canned prunes. 145.190 Section 145.190 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR HUMAN...

Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks.

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Saket Navlakha

2015-07-01

Full Text Available Robust, efficient, and low-cost networks are advantageous in both biological and engineered systems. During neural network development in the brain, synapses are massively over-produced and then pruned-back over time. This strategy is not commonly used when designing engineered networks, since adding connections that will soon be removed is considered wasteful. Here, we show that for large distributed routing networks, network function is markedly enhanced by hyper-connectivity followed by aggressive pruning and that the global rate of pruning, a developmental parameter not previously studied by experimentalists, plays a critical role in optimizing network structure. We first used high-throughput image analysis techniques to quantify the rate of pruning in the mammalian neocortex across a broad developmental time window and found that the rate is decreasing over time. Based on these results, we analyzed a model of computational routing networks and show using both theoretical analysis and simulations that decreasing rates lead to more robust and efficient networks compared to other rates. We also present an application of this strategy to improve the distributed design of airline networks. Thus, inspiration from neural network formation suggests effective ways to design distributed networks across several domains.

Towards an Efficient Artificial Neural Network Pruning and Feature Ranking Tool

KAUST Repository

AlShahrani, Mona

2015-01-01

Artificial Neural Networks (ANNs) are known to be among the most effective and expressive machine learning models. Their impressive abilities to learn have been reflected in many broad application domains such as image recognition, medical diagnosis, online banking, robotics, dynamic systems, and many others. ANNs with multiple layers of complex non-linear transformations (a.k.a Deep ANNs) have shown recently successful results in the area of computer vision and speech recognition. ANNs are parametric models that approximate unknown functions in which parameter values (weights) are adapted during training. ANN’s weights can be large in number and thus render the trained model more complex with chances for “overfitting” training data. In this study, we explore the effects of network pruning on performance of ANNs and ranking of features that describe the data. Simplified ANN model results in fewer parameters, less computation and faster training. We investigate the use of Hessian-based pruning algorithms as well as simpler ones (i.e. non Hessian-based) on nine datasets with varying number of input features and ANN parameters. The Hessian-based Optimal Brain Surgeon algorithm (OBS) is robust but slow. Therefore a faster parallel Hessian- approximation is provided. An additional speedup is provided using a variant we name ‘Simple n Optimal Brain Surgeon’ (SNOBS), which represents a good compromise between robustness and time efficiency. For some of the datasets, the ANN pruning experiments show on average 91% reduction in the number of ANN parameters and about 60% - 90% in the number of ANN input features, while maintaining comparable or better accuracy to the case when no pruning is applied. Finally, we show through a comprehensive comparison with seven state-of-the art feature filtering methods that the feature selection and ranking obtained as a byproduct of the ANN pruning is comparable in accuracy to these methods.

Towards an Efficient Artificial Neural Network Pruning and Feature Ranking Tool

KAUST Repository

AlShahrani, Mona

2015-05-24

Artificial Neural Networks (ANNs) are known to be among the most effective and expressive machine learning models. Their impressive abilities to learn have been reflected in many broad application domains such as image recognition, medical diagnosis, online banking, robotics, dynamic systems, and many others. ANNs with multiple layers of complex non-linear transformations (a.k.a Deep ANNs) have shown recently successful results in the area of computer vision and speech recognition. ANNs are parametric models that approximate unknown functions in which parameter values (weights) are adapted during training. ANN’s weights can be large in number and thus render the trained model more complex with chances for “overfitting” training data. In this study, we explore the effects of network pruning on performance of ANNs and ranking of features that describe the data. Simplified ANN model results in fewer parameters, less computation and faster training. We investigate the use of Hessian-based pruning algorithms as well as simpler ones (i.e. non Hessian-based) on nine datasets with varying number of input features and ANN parameters. The Hessian-based Optimal Brain Surgeon algorithm (OBS) is robust but slow. Therefore a faster parallel Hessian- approximation is provided. An additional speedup is provided using a variant we name ‘Simple n Optimal Brain Surgeon’ (SNOBS), which represents a good compromise between robustness and time efficiency. For some of the datasets, the ANN pruning experiments show on average 91% reduction in the number of ANN parameters and about 60% - 90% in the number of ANN input features, while maintaining comparable or better accuracy to the case when no pruning is applied. Finally, we show through a comprehensive comparison with seven state-of-the art feature filtering methods that the feature selection and ranking obtained as a byproduct of the ANN pruning is comparable in accuracy to these methods.

Cover crops and pruning in Bobal and Tempranillo vineyards have little influence on grapevine nutrition

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Pedro Pérez-Bermúdez

2016-06-01

Full Text Available ABSTRACT Cover crops may improve vineyard soil properties, grapevine nutrient status and berry composition, however, factors such as cover crop type, annual rainfall, climate and irrigation may change their effects on vineyards. From 2008 to 2011, the effects of a non-permanent cover crop and two pruning techniques on soil as well as vine nutrients and grapevine performance of two vineyards (cv. Tempranillo and cv. Bobal were evaluated. For that purpose, two legumes were sown in inter-rows of hand-pruned vines in February and were tilled at flowering. Soil tillage, or cover cropping, was combined with either light pruning or severe pruning to study foliar nutrient variations. Soil N, P, K and total organic carbon (TOC were determined in samples taken from the Ap1 horizon in January prior to vine pruning. Foliar N, P, K contents were measured in leaves sampled upon grape veraison. The differences between vineyards with cover cropping and bare soils suggest that legumes positively affected soil N (1.55 vs. 1.68 g kg−1 and 1.49 vs. 1.76 g kg−1 in Bobal and Tempranillo vineyards, respectively and soil organic matter (SOM (12.5 vs. 15.5 g kg−1 and 12.9 vs. 17.2 g kg−1 in Bobal and Tempranillo vineyards, respectively. The use of cover crops did not affect grapevine yields nor quality of Bobal and Tempranillo berry . Cover crops, or light pruning, did not alter the foliar N, P, K contents of both cultivars since their concentrations were similar to those found in the leaves from vineyards with soil tillage or severe pruning.

Enhanced Context Recognition by Sensitivity Pruned Vocabularies

DEFF Research Database (Denmark)

Madsen, Rasmus Elsborg; Sigurdsson, Sigurdur; Hansen, Lars Kai

2004-01-01

a latent semantic indexing representation and a probabilistic neural network classifier. Pruning the vocabularies to approximately 20% of the original size, we find consistent context recognition enhancement for two mid size data-sets for a range of training set sizes. We also study the applicability...

Loss of mTOR-Dependent Macroautophagy Causes Autistic-like Synaptic Pruning Deficits

OpenAIRE

Tang, Guomei; Gudsnuk, Kathryn; Kuo, Sheng-Han; Cotrina, Marisa L.; Rosoklija, Gorazd; Sosunov, Alexander; Sonders, Mark S.; Kanter, Ellen; Castagna, Candace; Yamamoto, Ai; Yue, Zhenyu; Arancio, Ottavio; Peterson, Bradley S.; Champagne, Frances; Dwork, Andrew J.

2014-01-01

Developmental alterations of excitatory synapses are implicated in autism spectrum disorders (ASDs). Here, we report increased dendritic spine density with reduced developmental spine pruning in layer V pyramidal neurons in postmortem ASD temporal lobe. These spine deficits correlate with hyperactivated mTOR and impaired autophagy. In Tsc2+/- ASD mice where mTOR is constitutively overactive, we observed postnatal spine pruning defects, blockade of autophagy, and ASD-like social...

The association between prune belly syndrome and dental anomalies: a case report.

Science.gov (United States)

Basso, Maria Daniela; Favretto, Carla Oliveira; Cunha, Robson Frederico

2012-12-18

Prune belly syndrome is a rare condition produced by an early mesodermal defect that causes abdominal abnormalities. However, the literature indicates that disturbances related to ectodermal development may also be present. This is the first case report in the literature to suggest that dental abnormalities are part of the broad spectrum of clinical features of prune belly syndrome. Because the syndrome causes many serious medical problems, early diagnosis of abnormalities involving the primary and permanent dentitions are encouraged. The authors report the clinical case of a 4-year-old Caucasian boy with prune belly syndrome. In addition to the triad of abdominal muscle deficiency, abnormalities of the gastrointestinal and urinary tracts, and cryptorchidism, a geminated mandibular right central incisor, agenesis of a mandibular permanent left incisor, and congenitally missing primary teeth (namely, the mandibular right and left lateral incisors) were noted. This original case report about prune belly syndrome highlights the possibility that dental abnormalities are a part of the broad spectrum of clinical features of the syndrome. Therefore, an accurate intra-oral clinical examination and radiographic evaluation are required for patients with this syndrome in order to provide an early diagnosis of abnormalities involving the primary and permanent dentitions.

The association between prune belly syndrome and dental anomalies: a case report

Directory of Open Access Journals (Sweden)

Basso Maria Daniela

2012-12-01

Full Text Available Abstract Background Prune belly syndrome is a rare condition produced by an early mesodermal defect that causes abdominal abnormalities. However, the literature indicates that disturbances related to ectodermal development may also be present. This is the first case report in the literature to suggest that dental abnormalities are part of the broad spectrum of clinical features of prune belly syndrome. Because the syndrome causes many serious medical problems, early diagnosis of abnormalities involving the primary and permanent dentitions are encouraged. Case presentation The authors report the clinical case of a 4-year-old Caucasian boy with prune belly syndrome. In addition to the triad of abdominal muscle deficiency, abnormalities of the gastrointestinal and urinary tracts, and cryptorchidism, a geminated mandibular right central incisor, agenesis of a mandibular permanent left incisor, and congenitally missing primary teeth (namely, the mandibular right and left lateral incisors were noted. Conclusion This original case report about prune belly syndrome highlights the possibility that dental abnormalities are a part of the broad spectrum of clinical features of the syndrome. Therefore, an accurate intra-oral clinical examination and radiographic evaluation are required for patients with this syndrome in order to provide an early diagnosis of abnormalities involving the primary and permanent dentitions.

Suspected Urine Leak in a Pediatric Renal Transplant Patient With Prune Belly Syndrome.

Science.gov (United States)

Liu, Bin; Kaplan, Summer L; Zhuang, Hongming

2016-03-01

Patients with prune belly syndrome usually have tortuous ureters, which can cause difficulty in the interpretation of renal scan used to evaluate possible urine leak after renal transplant. We reported a renal scan finding in a pediatric renal transplant patient with prune belly syndrome. The radioactivity in the dilated ureter, which was lateral to the renal transplant, appears to be urine leak.

Nitrogen fixation in Leucaena leucocephala and effects of pruning s on cereal yields

International Nuclear Information System (INIS)

Bekunda, M.

1998-01-01

Leucaena leucocephala was interplanted with reference tree species, Cassia siamea and Cassia spectabilis, and estimates of percent N derived from N 2 fixation (%Ndfa) were made, by the isotope-dilution method, at 4, 6, 14, 20 and 30 months after transplanting. The %Ndfa values were low and variable throughout the growth period, except after thinning at 14 months when there was a five-fold increase. The two non-fixing reference species outperformed the N 2 -fixing Leucaena in above-ground vegetative production, and provided different fixed-N estimates. Prunings from the L. leucocephala and C. Siamea trees were applied separately to soil as green manure. Maize was planted to test the effects of the Leucaena green manure on soil fertility, and millet was the test crop for the Cassia. Whether surface-applied or incorporated, the prunings significantly improved yields, which were generally similar among rates and methods of application. The proportions of cereal N obtained from prunings ranged from 8 to 33%, with no cereal-yield correlation. The data indicate that multipurpose tree prunings are of potential use to farmers as organic sources of nutrients, even at relatively low application rates, without need for incorporation into the soil. (author)

Pruning affects the vegetative balance of the wine grape (Vitis vinifera L.

Directory of Open Access Journals (Sweden)

Pedro José Almanza-Merchán

2014-08-01

Full Text Available Grape cultivation for wine production at altitudes between 2,200 and 2,600 m a.s.l. started in the department of Boyaca in 1982. Quality wines are produced by the AinKarim Vineyard in Ricaurte High. Wine grapes have to possess suitable organoleptic compounds at harvest in order to guarantee quality grape must that can be converted into wine. Therefore, it is necessary to maintain a suitable ratio the sources and the sinks and to guarantee production, quality and vegetative sustainability over time, conserving the equilibrium and benefiting the productive potential of the vineyard. The aim of this study was to evaluate the productive and vegetative balance effect in the wine grape varieties Cabernet Sauvignon and Sauvignon Blanc in Sutamarchan-Boyaca, considering different pruning types (short, long, and mixed. A bifactorial, completely random statistical design was used. At the time of harvest, the fruit production and pruned wood were evaluated. The long-pruned vines showed the best behavior and the most balanced source/sink relationship,, while Sauvignon Blanc demonstrated a better productive yield. Meanwhile, the short and mixed prunings had the better values for the Ravaz index (balance between fruit production and vegetative growth, indicating that they are more suitable for the conditions of the region, allowing for sustainability during the productive cycles of the wine grapes.

Involvements of PCD and changes in gene expression profile during self-pruning of spring shoots in sweet orange (Citrus sinensis).

Science.gov (United States)

Zhang, Jin-Zhi; Zhao, Kun; Ai, Xiao-Yan; Hu, Chun-Gen

2014-10-13

Citrus shoot tips abscise at an anatomically distinct abscission zone (AZ) that separates the top part of the shoots into basal and apical portions (citrus self-pruning). Cell separation occurs only at the AZ, which suggests its cells have distinctive molecular regulation. Although several studies have looked into the morphological aspects of self-pruning process, the underlying molecular mechanisms remain unknown. In this study, the hallmarks of programmed cell death (PCD) were identified by TUNEL experiments, transmission electron microscopy (TEM) and histochemical staining for reactive oxygen species (ROS) during self-pruning of the spring shoots in sweet orange. Our results indicated that PCD occurred systematically and progressively and may play an important role in the control of self-pruning of citrus. Microarray analysis was used to examine transcriptome changes at three stages of self-pruning, and 1,378 differentially expressed genes were identified. Some genes were related to PCD, while others were associated with cell wall biosynthesis or metabolism. These results strongly suggest that abscission layers activate both catabolic and anabolic wall modification pathways during the self-pruning process. In addition, a strong correlation was observed between self-pruning and the expression of hormone-related genes. Self-pruning plays an important role in citrus floral bud initiation. Therefore, several key flowering homologs of Arabidopsis and tomato shoot apical meristem (SAM) activity genes were investigated in sweet orange by real-time PCR and in situ hybridization, and the results indicated that these genes were preferentially expressed in SAM as well as axillary meristem. Based on these findings, a model for sweet orange spring shoot self-pruning is proposed, which will enable us to better understand the mechanism of self-pruning and abscission.

REM sleep selectively prunes and maintains new synapses in development and learning.

Science.gov (United States)

Li, Wei; Ma, Lei; Yang, Guang; Gan, Wen-Biao

2017-03-01

The functions and underlying mechanisms of rapid eye movement (REM) sleep remain unclear. Here we show that REM sleep prunes newly formed postsynaptic dendritic spines of layer 5 pyramidal neurons in the mouse motor cortex during development and motor learning. This REM sleep-dependent elimination of new spines facilitates subsequent spine formation during development and when a new motor task is learned, indicating a role for REM sleep in pruning to balance the number of new spines formed over time. Moreover, REM sleep also strengthens and maintains newly formed spines, which are critical for neuronal circuit development and behavioral improvement after learning. We further show that dendritic calcium spikes arising during REM sleep are important for pruning and strengthening new spines. Together, these findings indicate that REM sleep has multifaceted functions in brain development, learning and memory consolidation by selectively eliminating and maintaining newly formed synapses via dendritic calcium spike-dependent mechanisms.

Bonsai trees in your head: how the pavlovian system sculpts goal-directed choices by pruning decision trees.

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Quentin J M Huys

Full Text Available When planning a series of actions, it is usually infeasible to consider all potential future sequences; instead, one must prune the decision tree. Provably optimal pruning is, however, still computationally ruinous and the specific approximations humans employ remain unknown. We designed a new sequential reinforcement-based task and showed that human subjects adopted a simple pruning strategy: during mental evaluation of a sequence of choices, they curtailed any further evaluation of a sequence as soon as they encountered a large loss. This pruning strategy was Pavlovian: it was reflexively evoked by large losses and persisted even when overwhelmingly counterproductive. It was also evident above and beyond loss aversion. We found that the tendency towards Pavlovian pruning was selectively predicted by the degree to which subjects exhibited sub-clinical mood disturbance, in accordance with theories that ascribe Pavlovian behavioural inhibition, via serotonin, a role in mood disorders. We conclude that Pavlovian behavioural inhibition shapes highly flexible, goal-directed choices in a manner that may be important for theories of decision-making in mood disorders.

Prune belly syndrome in an Egyptian infant with Down syndrome: A case report

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Metwalley Kotb A

2008-10-01

Full Text Available Abstract Introduction Prune belly syndrome is a rare congenital anomaly of uncertain aetiology almost exclusive to males. The association between prune belly syndrome and Down syndrome is very rare. Case presentation A 4-month-old Egyptian boy was admitted to our institute for management of acute bronchiolitis. He was born at full term by normal vaginal delivery. His mother, a 42-year-Egyptian villager with six other children, had no antenatal or prenatal care. On examination, the boy was found to be hypotonic. In addition to features of Down syndrome, karyotyping confirmed the diagnosis of trisomy 21. Ultrasound examination of the abdomen showed bilateral gross hydronephrosis with megaureter. Micturating cystourethrography showed grade V vesicoureteric reflux bilaterally with no urethral obstruction. Serum creatinine concentration was 90 μmol/litre, serum sodium was 132 mmol/litre and serum potassium was 5.9 mmol/litre. Conclusion We report an Egyptian infant with Down syndrome and prune belly syndrome. The incidence of this association is unknown. Routine antenatal ultrasonography will help in discovering renal anomalies which can be followed postnatally. Postnatal detection of prune belly syndrome necessitates full radiological investigation to detect any renal anomalies. Early diagnosis of this syndrome and determining its optimal treatment are very important in helping to avoid its fatal course.

Prune belly syndrome in an Egyptian infant with Down syndrome: a case report.

Science.gov (United States)

Metwalley, Kotb A; Farghalley, Hekma S; Abd-Elsayed, Alaa A

2008-10-02

Prune belly syndrome is a rare congenital anomaly of uncertain aetiology almost exclusive to males. The association between prune belly syndrome and Down syndrome is very rare. A 4-month-old Egyptian boy was admitted to our institute for management of acute bronchiolitis. He was born at full term by normal vaginal delivery. His mother, a 42-year-Egyptian villager with six other children, had no antenatal or prenatal care. On examination, the boy was found to be hypotonic. In addition to features of Down syndrome, karyotyping confirmed the diagnosis of trisomy 21. Ultrasound examination of the abdomen showed bilateral gross hydronephrosis with megaureter. Micturating cystourethrography showed grade V vesicoureteric reflux bilaterally with no urethral obstruction. Serum creatinine concentration was 90 mumol/litre, serum sodium was 132 mmol/litre and serum potassium was 5.9 mmol/litre. We report an Egyptian infant with Down syndrome and prune belly syndrome. The incidence of this association is unknown. Routine antenatal ultrasonography will help in discovering renal anomalies which can be followed postnatally. Postnatal detection of prune belly syndrome necessitates full radiological investigation to detect any renal anomalies. Early diagnosis of this syndrome and determining its optimal treatment are very important in helping to avoid its fatal course.

Sensitivity of directed networks to the addition and pruning of edges and vertices

Science.gov (United States)

Goltsev, A. V.; Timár, G.; Mendes, J. F. F.

2017-08-01

Directed networks have various topologically different extensive components, in contrast to a single giant component in undirected networks. We study the sensitivity (response) of the sizes of these extensive components in directed complex networks to the addition and pruning of edges and vertices. We introduce the susceptibility, which quantifies this sensitivity. We show that topologically different parts of a directed network have different sensitivity to the addition and pruning of edges and vertices and, therefore, they are characterized by different susceptibilities. These susceptibilities diverge at the critical point of the directed percolation transition, signaling the appearance (or disappearance) of the giant strongly connected component in the infinite size limit. We demonstrate this behavior in randomly damaged real and synthetic directed complex networks, such as the World Wide Web, Twitter, the Caenorhabditis elegans neural network, directed Erdős-Rényi graphs, and others. We reveal a nonmonotonic dependence of the sensitivity to random pruning of edges or vertices in the case of C. elegans and Twitter that manifests specific structural peculiarities of these networks. We propose the measurements of the susceptibilities during the addition or pruning of edges and vertices as a new method for studying structural peculiarities of directed networks.

Carbon footprint associated with four disposal scenarios for urban pruning waste.

Science.gov (United States)

Araújo, Yuri Rommel Vieira; de Góis, Monijany Lins; Junior, Luiz Moreira Coelho; Carvalho, Monica

2018-01-01

The inadequate disposal of urban pruning residues can cause significant environmental impacts. The objective of the study presented herein was to quantify the carbon footprint and analyze four disposal scenarios for the urban pruning waste of the city of Joao Pessoa (Northeast Brazil). Software SimaPro was utilized for the quantification of the carbon footprint, with the IPCC 2013 GWP 100y impact evaluation method. The end-of-life treatments considered were sanitary landfilling (with and without collection of methane), simple municipal incineration, and reutilization of wood (transformation into briquettes). The results indicated that simple disposal in sanitary landfill generated 136.34 kg CO 2 /t urban pruning waste collected (highest carbon footprint), sanitary landfill with methane collection emitted 113.43 kg CO 2 /t waste, municipal incineration generated 71.31 kg CO 2 /t waste, and reutilization of woody residues was the scenario with the lowest carbon footprint, with 27.82 kg CO 2 /t waste. This study demonstrated that reutilization of biomass, besides being environmentally viable, presents the potential to contribute to the city's environmental quality, including the possibility of being used to obtain carbon credits.

Using a pruned, nondirect product basis in conjunction with the multi-configuration time-dependent Hartree (MCTDH) method

Energy Technology Data Exchange (ETDEWEB)

Wodraszka, Robert, E-mail: Robert.Wodraszka@chem.queensu.ca; Carrington, Tucker, E-mail: Tucker.Carrington@queensu.ca [Department of Chemistry, Queen’s University, Kingston, Ontario K7L 3N6 (Canada)

2016-07-28

In this paper, we propose a pruned, nondirect product multi-configuration time dependent Hartree (MCTDH) method for solving the Schrödinger equation. MCTDH uses optimized 1D basis functions, called single particle functions, but the size of the standard direct product MCTDH basis scales exponentially with D, the number of coordinates. We compare the pruned approach to standard MCTDH calculations for basis sizes small enough that the latter are possible and demonstrate that pruning the basis reduces the CPU cost of computing vibrational energy levels of acetonitrile (D = 12) by more than two orders of magnitude. Using the pruned method, it is possible to do calculations with larger bases, for which the cost of standard MCTDH calculations is prohibitive. Pruning the basis complicates the evaluation of matrix-vector products. In this paper, they are done term by term for a sum-of-products Hamiltonian. When no attempt is made to exploit the fact that matrices representing some of the factors of a term are identity matrices, one needs only to carefully constrain indices. In this paper, we develop new ideas that make it possible to further reduce the CPU time by exploiting identity matrices.

7 CFR 457.133 - Prune crop insurance provisions.

Science.gov (United States)

2010-01-01

... roadside stand, farmer's market, and permitting the general public to enter the field for the purpose of... (except where otherwise provided in the Special Provisions); (d) That are grown in an orchard that, if... not been controlled or pruning debris has not been removed from the orchard; (3) Wildlife; (4...

Vocabulary Pruning for Improved Context Recognition

DEFF Research Database (Denmark)

Madsen, Rasmus Elsborg; Sigurdsson, Sigurdur; Hansen, Lars Kai

2004-01-01

Language independent `bag-of-words' representations are surprisingly effective for text classification. The representation is high dimensional though, containing many non-consistent words for text categorization. These non-consistent words result in reduced generalization performance of subsequent...... of term relevancy, when pruning the vocabularies. With reduced vocabularies documents are classified using a latent semantic indexing representation and a probabilistic neural network classifier. Reducing the bag-of-words vocabularies with 90%-98%, we find consistent classification improvement using two...

The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA.

Science.gov (United States)

Aparicio, Frederic; Vilar, Marçal; Perez-Payá, Enrique; Pallás, Vicente

2003-08-15

Binding of coat protein (CP) to the 3' nontranslated region (3'-NTR) of viral RNAs is a crucial requirement to establish the infection of Alfamo- and Ilarviruses. In vitro binding properties of the Prunus necrotic ringspot ilarvirus (PNRSV) CP to the 3'-NTR of its genomic RNA using purified E. coli- expressed CP and different synthetic peptides corresponding to a 26-residue sequence near the N-terminus were investigated by electrophoretic mobility shift assays. PNRSV CP bound to, at least, three different sites existing on the 3'-NTR. Moreover, the N-terminal region between amino acid residues 25 to 50 of the protein could function as an independent RNA-binding domain. Single exchange of some arginine residues by alanine eliminated the RNA-interaction capacity of the synthetic peptides, consistent with a crucial role for Arg residues common to many RNA-binding proteins possessing Arg-rich domains. Circular dichroism spectroscopy revealed that the RNA conformation is altered when amino-terminal CP peptides bind to the viral RNA. Finally, mutational analysis of the 3'-NTR suggested the presence of a pseudoknotted structure at this region on the PNRSV RNA that, when stabilized by the presence of Mg(2+), lost its capability to bind the coat protein. The existence of two mutually exclusive conformations for the 3'-NTR of PNRSV strongly suggests a similar regulatory mechanism at the 3'-NTR level in Alfamo- and Ilarvirus genera.

The coat protein of prunus necrotic ringspot virus specifically binds to and regulates the conformation of its genomic RNA

International Nuclear Information System (INIS)

Aparicio, Frederic; Vilar, Marcal; Perez-Paya, Enrique; Pallas, Vicente

2003-01-01

Binding of coat protein (CP) to the 3' nontranslated region (3'-NTR) of viral RNAs is a crucial requirement to establish the infection of Alfamo- and Ilarviruses. In vitro binding properties of the Prunus necrotic ringspot ilarvirus (PNRSV) CP to the 3'-NTR of its genomic RNA using purified E. coli- expressed CP and different synthetic peptides corresponding to a 26-residue sequence near the N-terminus were investigated by electrophoretic mobility shift assays. PNRSV CP bound to, at least, three different sites existing on the 3'-NTR. Moreover, the N-terminal region between amino acid residues 25 to 50 of the protein could function as an independent RNA-binding domain. Single exchange of some arginine residues by alanine eliminated the RNA-interaction capacity of the synthetic peptides, consistent with a crucial role for Arg residues common to many RNA-binding proteins possessing Arg-rich domains. Circular dichroism spectroscopy revealed that the RNA conformation is altered when amino-terminal CP peptides bind to the viral RNA. Finally, mutational analysis of the 3'-NTR suggested the presence of a pseudoknotted structure at this region on the PNRSV RNA that, when stabilized by the presence of Mg 2+ , lost its capability to bind the coat protein. The existence of two mutually exclusive conformations for the 3'-NTR of PNRSV strongly suggests a similar regulatory mechanism at the 3'-NTR level in Alfamo- and Ilarvirus genera

Prune belly syndrome: Early management outcome of nine ...

African Journals Online (AJOL)

Background: Prune belly syndrome (PBS) is a rare congenital malformation of unclear etiology. The disease progress and outcome in developing countries are not clear as most reports are isolated case reports. Materials and Methods: A review of 9 patients managed for PBS in 5 years. Results: There were 7 males and 2 ...

Prune belly syndrome associated with bilateral multicystic dysplastic kidneys and urethral obstruction: A case report

Directory of Open Access Journals (Sweden)

Arzu Akdag

2015-06-01

Full Text Available Prune belly syndrome is a rare congenital disorder defined by a characteristic clinical triad: Abdominal muscle deficiency, severe urinary tract abnormalities, and bilateral cryptorchidism. We describe a preterm neonate of Prune Belly syndrome who had abdominal muscle deficiency, multicystic dysplastic kidney, urethral hypoplasia and pulmonary hypoplasia. We presented this rare case with the data gathered from the literatüre.

Deletion of hepatocyte nuclear factor-1-beta in an infant with prune belly syndrome.

Science.gov (United States)

Haeri, Sina; Devers, Patricia L; Kaiser-Rogers, Kathleen A; Moylan, Vincent J; Torchia, Beth S; Horton, Amanda L; Wolfe, Honor M; Aylsworth, Arthur S

2010-08-01

Prune belly syndrome is a rare congenital disorder characterized by deficiency of abdominal wall muscles, cryptorchidism, and urinary tract anomalies. We have had the opportunity to study a baby with prune belly syndrome associated with an apparently de novo 1.3-megabase interstitial 17q12 microdeletion that includes the hepatocyte nuclear factor-1-beta gene at 17q12. One previous patient, an adult, has been reported with prune belly syndrome and a hepatocyte nuclear factor-1-beta microdeletion. Hepatocyte nuclear factor-1-beta is a widely expressed transcription factor that regulates tissue-specific gene expression and is expressed in numerous tissues including mesonephric duct derivatives, the renal tubule of the metanephros, and the developing prostate of the mouse. Mutations in hepatocyte nuclear factor-1-beta cause the "renal cysts and diabetes syndrome," isolated renal cystic dysplasia, and a variety of other malformations. Based on its expression pattern and the observation of two affected cases, we propose that haploinsufficiency of hepatocyte nuclear factor-1-beta may be causally related to the production of the prune belly syndrome phenotype through a mechanism of prostatic and ureteral hypoplasia that results in severe obstructive uropathy with urinary tract and abdominal distension. Copyright Thieme Medical Publishers.

An Artificial Neural Network Modeling for Force Control System of a Robotic Pruning Machine

Directory of Open Access Journals (Sweden)

Ali Hashemi

2014-06-01

Full Text Available Nowadays, there has been an increasing application of pruning robots for planted forests due to the growing concern on the efficiency and safety issues. Power consumption and working time of agricultural machines have become important issues due to the high value of energy in modern world. In this study, different multi-layer back-propagation networks were utilized for mapping the complex and highly interactive of pruning process parameters and to predict power consumption and cutting time of a force control equipped robotic pruning machine by knowing input parameters such as: rotation speed, stalk diameter, and sensitivity coefficient. Results showed significant effects of all input parameters on output parameters except rotational speed on cutting time. Therefore, for reducing the wear of cutting system, a less rotational speed in every sensitivity coefficient should be selected.

Influence of Pre- and Postharvest Summer Pruning on the Growth, Yield, Fruit Quality, and Carbohydrate Content of Early Season Peach Cultivars

Science.gov (United States)

Ikinci, Ali

2014-01-01

Winter and summer pruning are widely applied processes in all fruit trees, including in peach orchard management. This study was conducted to determine the effects of summer prunings (SP), as compared to winter pruning (WP), on shoot length, shoot diameter, trunk cross sectional area (TCSA) increment, fruit yield, fruit quality, and carbohydrate content of two early ripening peach cultivars (“Early Red” and “Maycrest”) of six years of age, grown in semiarid climate conditions, in 2008 to 2010. The trees were grafted on GF 677 rootstocks, trained with a central leader system, and spaced 5 × 5 m apart. The SP carried out after harvesting in July and August decreased the shoot length significantly; however, it increased its diameter. Compared to 2009, this effect was more marked in year 2010. In general, control and winter pruned trees of both cultivars had the highest TCSA increment and yield efficiency. The SP increased the average fruit weight and soluble solids contents (SSC) more than both control and WP. The titratable acidity showed no consistent response to pruning time. The carbohydrate accumulation in shoot was higher in WP and in control than in SP trees. SP significantly affected carbohydrate accumulation; postharvest pruning showed higher carbohydrate content than preharvest pruning. PMID:24737954

Effects of root pruning on the growth and rhizosphere soil characteristics of short-rotation closed-canopy poplar

Energy Technology Data Exchange (ETDEWEB)

Du, Z. Y.; Xing, S. J.; Ma, B. Y.; Liu, F. C.; Ma, H. L.; Wang, Q. H.

2012-11-01

When poplar trees planted at a high density are canopy-closed in plantation after 4-5 years of growth, the roots of adjacent trees will inevitably intermingle together, which possibly restricts the nutrient uptake by root system. Root pruning might stimulate the emergence of fine roots and benefit the tree growth of short-rotation poplar at the stage of canopy closing. The aim of this study is to evaluate the effects of root pruning on DBH (diameter at breast height, 1.3 m), tree height, nutrients (N, P and K) and hormones (indoleacetic acid and cytokinin) in poplar leaves, gas exchange variables (photosynthetic rate and stomatal conductance), and rhizosphere soil characteristics. Field experiment was carried out with four-yearold poplar (Populus × euramericana cv. ‘Neva’) planted in a fluvo-aquic loam soil in Shandong province, China in early April, 2008. Three root pruning treatments (severe, moderate and light degree) were conducted at the distances of 6, 8 and 10 times DBH on both inter-row sides of the trees to the depth of 30 cm, respectively. The results showed that the growth performance was obtained in the following order of treatments: moderate > light = control > severe. In the rhizophere soil, moderate and light pruning increased the microbial populations, enzymatic activities, and the concentrations of available N, P, K and organic matter. Generally, root pruning to improve tree growth and rhizosphere soil fertility can be recommended in canopy-closed poplar plantation. The appropriate selection of root pruning intensity is a pivotal factor for the effectiveness of this technique. (Author) 35 refs.

Field performance of Quercus bicolor established as repeatedly air-root-pruned container and bareroot planting stock

Science.gov (United States)

J.W." Jerry" Van Sambeek; Larry D. Godsey; William D. Walter; Harold E. Garrett; John P. Dwyer

2016-01-01

Benefits of repeated air-root-pruning of seedlings when stepping up to progressively larger containers include excellent lateral root distribution immediately below the root collar and an exceptionally fibrous root ball. To evaluate long-term field performance of repeatedly air-root-pruned container stock, three plantings of swamp white oak (Quercus bicolor...

First steps in translating human cognitive processes of cane pruning grapevines into AI rules for automated robotic pruning

Directory of Open Access Journals (Sweden)

Saxton Valerie

2014-01-01

Full Text Available Cane pruning of grapevines is a skilled task for which, internationally, there is a dire shortage of human pruners. As part of a larger project developing an automated robotic pruner, we have used artificial intelligence (AI algorithms to create an expert system for selecting new canes and cutting off unwanted canes. A domain and ontology has been created for AI, which reflects the expertise of expert human pruners. The first step in the creation of an expert system was to generate virtual vines, which were then ‘pruned’ by human pruners and also by the expert system in its infancy. Here we examined the decisions of 12 human pruners, for consistency of decision, on 60 virtual vines. 96.7% of the 12 pruners agreed on at least one cane choice after which there was diminishing agreement on which further canes to select for laying. Our results indicate that techniques developed in computational intelligence can be used to co-ordinate and synthesise the expertise of human pruners into a best practice format. This paper describes first steps in this knowledge elicitation process, and discusses the fit between cane pruning expertise and the expertise that can be elicited using AI based expert system techniques.

Encapsulating peritoneal sclerosis in a peritoneal dialysis patient with prune-belly syndrome: a case report.

Science.gov (United States)

Geurts, N; Hubens, G; Wojciechowski, M; Vaneerdeweg, W

2010-01-01

This case describes a prune-belly syndrome patient who had a kidney transplantation and was diagnosed with Encapsulating Peritoneal Sclerosis (EPS), a rare but potentially fatal condition, mostly associated with Peritoneal Dialysis (PD). The definition of EPS is based on the clinical findings linked to bowel obstruction and on the demonstration of peritoneal thickening. Surgical treatment is the only established basic treatment for the condition. Prune-belly syndrome is characterized by the triad of deficient abdominal musculature, urinary tract abnormality and cryptorchidism. Because it is often associated with end-stage renal disease, PD is essential in the treatment of patients with prune-belly syndrome. The aetiology of EPS follows a 'two-hit theory': the first 'hit' is peritoneal deterioration, caused by long-time exposure to PD. This causes peritoneal disruption which predisposes the patient to a second hit. In our patient, PD discontinuation and renal transplantation are possible 'second hits' that triggered the development of EPS. This case of prune-belly syndrome has all the necessary elements for the development of EPS, and we felt we should report it as the peroperative diagnosis was unexpected.

Axon Termination, Pruning, and Synaptogenesis in the Giant Fiber System of Drosophila melanogaster Is Promoted by Highwire.

Science.gov (United States)

Borgen, Melissa; Rowland, Kimberly; Boerner, Jana; Lloyd, Brandon; Khan, Aruna; Murphey, Rodney

2017-03-01

The ubiquitin ligase Highwire has a conserved role in synapse formation. Here, we show that Highwire coordinates several facets of central synapse formation in the Drosophila melanogaster giant fiber system, including axon termination, axon pruning, and synaptic function. Despite the similarities to the fly neuromuscular junction, the role of Highwire and the underlying signaling pathways are distinct in the fly's giant fiber system. During development, branching of the giant fiber presynaptic terminal occurs and, normally, the transient branches are pruned away. However, in highwire mutants these ectopic branches persist, indicating that Highwire promotes axon pruning. highwire mutants also exhibit defects in synaptic function. Highwire promotes axon pruning and synaptic function cell-autonomously by attenuating a mitogen-activated protein kinase pathway including Wallenda, c-Jun N-terminal kinase/Basket, and the transcription factor Jun. We also show a novel role for Highwire in non-cell autonomous promotion of synaptic function from the midline glia. Highwire also regulates axon termination in the giant fibers, as highwire mutant axons exhibit severe overgrowth beyond the pruning defect. This excessive axon growth is increased by manipulating Fos expression in the cells surrounding the giant fiber terminal, suggesting that Fos regulates a trans -synaptic signal that promotes giant fiber axon growth. Copyright © 2017 by the Genetics Society of America.

7 CFR 52.3188 - Work sheet for dried prunes.

Science.gov (United States)

2010-01-01

... for dried prunes. Size and kind of container Container mark or identification Label or brand Varietal... fermentation, scars, heat damage, insect injury, other means, mold, dirt, foreign material, insect infestation... fermentation, scars, heat damage, insect injury, other means, mold, dirt, foreign material, insect infestation...

Effect of pruning height on the architecture of plants of camu camu (Myrciaria dubia HBK Mc Vaugh in the experimental station of IIAP, Ucayali, Peru.

Directory of Open Access Journals (Sweden)

Carlos Abanto

2011-06-01

Full Text Available In order to evaluate the response camu camu’s plants in plantations initial undergoing training pruning, an experiment was installed in EE - IIAP-Ucayali, under a design randomized complete block, with 3 replications, making use of 20 plants per experimental unit. The pruning treatments were performing at different heights from the base of the stem, it was considered T0 [witness without pruning], T1 [pruning to 10 cm from the base], T2 [pruning to 20 cm from the base] and T3 [pruning to 40 cm from the base] in plants of known provenance. The investigation was directed to evaluate the number of shoots, shoot growth, plant height, basal diameter, crown diameter and number of branches. After of 9 months of evaluation was found significant differences between the variables except in top diameter. In the variable Height, treatment T0 [witness without pruning] outstanding because they were not pruned, among the remaining treatments has similarly behaved, surpassing the control treatment by 267 %. In addition to this, the basal diameter was found that T1 [pruning to 10 cm from the base] has a better performed with an average value of 1.96 cm compared with the control (1.7cm. The pruning had a positive influence in the number of branches, with an average of 13.4 branches compared with T0 that get 3.1 branches on average, its shows that the pruning can increased up the production of branches to 432.3%.

Prune Belly Syndrome: A case Report | Ezeaka | Nigerian Quarterly ...

African Journals Online (AJOL)

The Prune Belly Syndrome (PBS) is a anomaly. It comprises of a lax abdominal wall musculature, urinary tract anomalies, and cryptorchidism. Our patients had urinary tract infection and renal failure. These are well described consequences of the syndrome and are poor prognostic indices. This case report was undertaken ...

Prune-belly syndrome in two children and review of the literature.

Science.gov (United States)

Bogart, Megan M; Arnold, Holly E; Greer, Kenneth E

2006-01-01

Prune-belly syndrome is a congenital disorder characterized by abdominal wall musculature deficiency, urinary tract anomalies, and bilateral cryptorchidism. Because of the defect in the musculature, the abdominal skin has a peculiar wrinkled appearance. The syndrome is commonly associated with pulmonary, skeletal, cardiac, and gastrointestinal defects. Developmental delays and growth retardation have also been reported. The incidence of prune belly syndrome is approximately 1:40,000 live births. Over 95% of patients are men. Urinary tract disease is the major prognostic factor, with the complications of pulmonary hypoplasia and end stage renal disease resulting in a mortality rate of 60%. Treatment involves surgical correction of the abdominal wall defect and urinary tract abnormalities, early orchiopexy, and supportive management of associated defects.

The improved Apriori algorithm based on matrix pruning and weight analysis

Science.gov (United States)

Lang, Zhenhong

2018-04-01

This paper uses the matrix compression algorithm and weight analysis algorithm for reference and proposes an improved matrix pruning and weight analysis Apriori algorithm. After the transactional database is scanned for only once, the algorithm will construct the boolean transaction matrix. Through the calculation of one figure in the rows and columns of the matrix, the infrequent item set is pruned, and a new candidate item set is formed. Then, the item's weight and the transaction's weight as well as the weight support for items are calculated, thus the frequent item sets are gained. The experimental result shows that the improved Apriori algorithm not only reduces the number of repeated scans of the database, but also improves the efficiency of data correlation mining.

Síndrome de Prune Belly

Directory of Open Access Journals (Sweden)

Roni Leonardo Teixeira

Full Text Available Prune Belly Syndrome is a fetal uropathy of unknown etiology with incidence of 1/35000 to 1/50000 alive been born, characterized by a classical triad: abdominal musculature congenital deficiency, bilateral criptorquidia and urinary tract malformations. The authors present a case of this rare pathology associated with a patent urachus. After complementary exams confirmed urinary tract alterations (bilateral ureterohidronefrosis and vesicoureteral reflux degree 5, besides urinary infection, the surgical approach was vesicostomy to decrease urinary infections and sepsis. Definitve surgery should be accomplished around the 12th month of life. Nowadays, the child is asymptomatic , with follow-up every two months, with return consultation bimonthly.

Familial prune belly syndrome in a Nigerian family.

Science.gov (United States)

Ibadin, Michael Okoeguale; Ademola, Ade Adeyekun; Ofovwe, Gabriel Egberue

2012-03-01

A case of Prune Belly Syndrome in an infant, the second in a middle class family with both parents in their late thirties, is presented because of its rarity. Constraints in the management are discussed and relevant literature reviewed. This is intended to awaken interest and sharpen indices of suspicion that would facilitate early diagnosis, enhance management, and mitigate prejudices.

Induction and pruning of classification rules for prediction of microseismic hazards in coal mines

Energy Technology Data Exchange (ETDEWEB)

Sikora, M. [Silesian Technical University, Gliwice (Poland)

2011-06-15

The paper presents results of application of a rule induction and pruning algorithm for classification of a microseismic hazard state in coal mines. Due to imbalanced distribution of examples describing states 'hazardous' and 'safe', the special algorithm was used for induction and rule pruning. The algorithm selects optimal parameters' values influencing rule induction and pruning based on training and tuning sets. A rule quality measure which decides about a form and classification abilities of rules that are induced is the basic parameter of the algorithm. The specificity and sensitivity of a classifier were used to evaluate its quality. Conducted tests show that the admitted method of rules induction and classifier's quality evaluation enables to get better results of classification of microseismic hazards than by methods currently used in mining practice. Results obtained by the rules-based classifier were also compared with results got by a decision tree induction algorithm and by a neuro-fuzzy system.

Prune-belly syndrome detected by ultrasound in the first trimester and the usefulness of vesicocentesis as a modality of treatment.

Science.gov (United States)

Byon, Mina; Kim, Gwang Jun

2013-07-01

Prune-belly syndrome may be related to lower urinary tract obstruction (LUTO). LUTO in the early gestational age exacerbates fetal renal function and may require intrauterine intervention. If early developed LUTO causes bladder distension and abdominal musculature deficiency, it will result in prune belly syndrome. Therefore, early detection of the disease and proper treatment before the renal impairment is important. However, there are few literatures concerning the treatment of prune belly syndrome in the first trimester. We report a case of prune belly syndrome diagnosed at 11+6 weeks of gestation and the value of vesicocentesis as a modality of treatment. Ultrasound showed dilated fetal bladder and vesicocentesis was successful in reducing the volume of the bladder. However, the pregnancy was terminated upon request.

Traceability System for Improved Utilization of Solid Biofuel from Agricultural Prunings

Directory of Open Access Journals (Sweden)

Techane Bosona

2018-01-01

Full Text Available Biomass production and supply for renewable energy generation should be managed well and carried out in a sustainable manner. An effective traceability system (TS is required to provide sufficient information and assure the quality of the biomass. The objective of this study is to define and develop a TS to assure the pruning biomass quality for the production of solid biofuels and to provide guarantee to the final user that the biomass is in good condition according to recommended quality criteria. It is designed for an agricultural pruning supply chain in which farmers, biomass traders, transporters, and end users are major actors. It is based on the biofuel quality requirements required by final users and other standards such as the new European standards EN 14961-1, EN15234:1-2011, and EN14961-1:2010, which describe solid fuel quality parameters. Traceable quality parameters include origin and source of product, traded form, bale dimension, chips size distribution, moisture content, ash content, and density of biomass. In this TS, a unique product label is introduced and integrated into a smart logistics system (SLS. The TS uses information captured at different stages of the product supply chain. It enables the management of the whole pruning biomass supply chain with the support of a centralized web-based information platform, an integral part of the SLS.

The effects of pruning and nodal adventitious roots on polychlorinated biphenyl uptake by Cucurbita pepo grown in field conditions

Energy Technology Data Exchange (ETDEWEB)

Low, Jennifer E.; Whitfield Aslund, Melissa L. [Department of Chemistry and Chemical Engineering, Royal Military College of Canada, PO Box 17000 Station Forces, Kingston, ON, K7K 7B4 (Canada); Rutter, Allison [School of Environmental Studies, Rm 0626 Biosciences Complex, Queen' s University, 116 Barrie St., Kingston, ON, K7L 3N6 (Canada); Zeeb, Barbara A., E-mail: zeeb-b@rmc.ca [Department of Chemistry and Chemical Engineering, Royal Military College of Canada, PO Box 17000 Station Forces, Kingston, ON, K7K 7B4 (Canada)

2011-03-15

Two cultivation techniques (i-pruning and ii-nodal adventitious root encouragement) were investigated for their ability to increase PCB phytoextraction by Cucurbita pepo ssp pepo cv. Howden (pumpkin) plants in situ at a contaminated industrial site in Ontario (Aroclor 1248, mean soil [PCB] = 5.6 {mu}g g{sup -1}). Pruning was implemented to increase plant biomass close to the root where PCB concentration is known to be highest. This treatment was found to have no effect on final shoot biomass or PCB concentration. However, material pruned from the plant is not included in the final shoot biomass. The encouragement of nodal adventitious roots at stem nodes did significantly increase the PCB concentration in the primary stem, while not affecting shoot biomass. Both techniques are easily applied cultivation practices that may be implemented to decrease phytoextraction treatment time. - Research highlights: > Presence of nodal adventitious roots do increase phytoextraction efficiency. > Pruning may increase the biomass of pumpkin plants during phytoextraction. > [Aroclor 1248] decreases in plant tissue with increasing distance from the root. - The application of cultivation practices (pruning and nodal adventitious root encouragement) increases phytoextraction of PCBs in C. pepo.

The effects of pruning and nodal adventitious roots on polychlorinated biphenyl uptake by Cucurbita pepo grown in field conditions

International Nuclear Information System (INIS)

Low, Jennifer E.; Whitfield Aslund, Melissa L.; Rutter, Allison; Zeeb, Barbara A.

2011-01-01

Two cultivation techniques (i-pruning and ii-nodal adventitious root encouragement) were investigated for their ability to increase PCB phytoextraction by Cucurbita pepo ssp pepo cv. Howden (pumpkin) plants in situ at a contaminated industrial site in Ontario (Aroclor 1248, mean soil [PCB] = 5.6 μg g -1 ). Pruning was implemented to increase plant biomass close to the root where PCB concentration is known to be highest. This treatment was found to have no effect on final shoot biomass or PCB concentration. However, material pruned from the plant is not included in the final shoot biomass. The encouragement of nodal adventitious roots at stem nodes did significantly increase the PCB concentration in the primary stem, while not affecting shoot biomass. Both techniques are easily applied cultivation practices that may be implemented to decrease phytoextraction treatment time. - Research highlights: → Presence of nodal adventitious roots do increase phytoextraction efficiency. → Pruning may increase the biomass of pumpkin plants during phytoextraction. → [Aroclor 1248] decreases in plant tissue with increasing distance from the root. - The application of cultivation practices (pruning and nodal adventitious root encouragement) increases phytoextraction of PCBs in C. pepo.

Fast Parsing using Pruning and Grammar Specialization

OpenAIRE

Rayner, Manny; Carter, David

1996-01-01

We show how a general grammar may be automatically adapted for fast parsing of utterances from a specific domain by means of constituent pruning and grammar specialization based on explanation-based learning. These methods together give an order of magnitude increase in speed, and the coverage loss entailed by grammar specialization is reduced to approximately half that reported in previous work. Experiments described here suggest that the loss of coverage has been reduced to the point where ...

Longleaf Pine Root System Development and Seedling Quality in Response to Copper Root Pruning and Cavity Size

Science.gov (United States)

Mary Anne Sword Sayer; Shi-Jean Susana Sung; James D. Haywood

2011-01-01

Cultural practices that modify root system structure in the plug of container-grown seedlings have the potential to improve root system function after planting. Our objective was to assess how copper root pruning affects the quality and root system development of longleaf pine seedlings grown in three cavity sizes in a greenhouse. Copper root pruning increased seedling...

Familial prune belly syndrome in a Nigerian family

Directory of Open Access Journals (Sweden)

Michael Okoeguale Ibadin

2012-01-01

Full Text Available A case of Prune Belly Syndrome in an infant, the second in a middle class family with both parents in their late thirties, is presented because of its rarity. Constraints in the manage-ment are discussed and relevant literature reviewed. This is intended to awaken interest and sharpen indices of suspicion that would facilitate early diagnosis, enhance management, and mitigate prejudices.

Combustion of a Pb(II)-loaded olive tree pruning used as biosorbent.

Science.gov (United States)

Ronda, A; Della Zassa, M; Martín-Lara, M A; Calero, M; Canu, P

2016-05-05

The olive tree pruning is a specific agroindustrial waste that can be successfully used as adsorbent, to remove Pb(II) from contaminated wastewater. Its final incineration has been studied in a thermobalance and in a laboratory flow reactor. The study aims at evaluating the fate of Pb during combustion, at two different scales of investigation. The flow reactor can treat samples approximately 10(2) larger than the conventional TGA. A detailed characterization of the raw and Pb(II)-loaded waste, before and after combustion is presented, including analysis of gas and solids products. The Pb(II)-loaded olive tree pruning has been prepared by a previous biosorption step in a lead solution, reaching a concentration of lead of 2.3 wt%. Several characterizations of the ashes and the mass balances proved that after the combustion, all the lead presents in the waste remained in ashes. Combustion in a flow reactor produced results consistent with those obtained in the thermobalance. It is thus confirmed that the combustion of Pb(II)-loaded olive tree pruning is a viable option to use it after the biosorption process. The Pb contained in the solid remained in the ashes, preventing possible environmental hazards. Copyright © 2016 Elsevier B.V. All rights reserved.

Corset Usage for Gastrointestinal and Respiratory Problems in a Newborn with Prune Belly Syndrome.

Science.gov (United States)

Satar, Mehmet; Özlü, Ferda; Yapıcıoğlu, Hacer; İskit, Serdar

2016-07-01

Prune Belly syndrome (PBS), comprises a triad of anomalies that include abdominal wall flaccidity, urologic anomalies and bilateral cryptorchidism in males. The abdominal musculature hypoplasia predisposes to respiratory problems, respiratory infections secondary to impaired cough mechanism, and cause chronic constipation secondary to ineffective valsalva ability. Here, the authors present a newborn baby with Prune Belly syndrome who had respiratory and gastrointestinal problems which resolved after corset use. To the authors knowledge, this is the first case of corset usage in the treatment of PBS in a newborn infant.

Bioavailability of Compounds Susceptible to Enzymatic Oxidation Enhances Growth of Shiitake Medicinal Mushroom (Lentinus edodes) in Solid-State Fermentation with Vineyard Prunings.

Science.gov (United States)

Cabrera, Rosina; López-Peña, Damian; Asaff, Ali; Esqueda, Martín; Valenzuela-Soto, Elisa M

2018-01-01

Grapes are widely produced in northwestern Mexico, generating many wood trimmings (vineyard prunings) that have no further local use. This makes vineyard prunings a very attractive alternative for the cultivation of white-rot medicinal mushrooms such as Lentinus edodes. This type of wood can also offer a model for the evaluation of oxidative enzyme production during the fermentation process. We tested the effect of wood from vineyard prunings on the vegetative growth of and production of ligninolytic enzymes in L. edodes in solid-state fermentation and with wheat straw as the control substrate. The specific growth rate of the fungus was 2-fold higher on vineyard pruning culture (μM = 0.95 day-1) than on wheat straw culture (μM = 0.47 day-1). Laccase-specific production was 4 times higher in the vineyard prunings culture than on wheat straw (0.34 and 0.08 mU · mg protein-1 · ppm CO2-1, respectively), and manganese peroxidase production was 3.7 times higher on wheat straw culture than on vineyard prunings (2.21 and 0.60 mU · mg protein-1 · ppm CO2-1, respectively). To explain accurately these differences in growth and ligninolytic enzyme activity, methanol extracts were obtained from each substrate and characterized. Resveratrol and catechins were the main compounds identified in vineyard prunings, whereas epigallocatechin was the only one detected in wheat straw. Compounds susceptible to enzymatic oxidation are more bioavailable in vineyard prunings than in wheat straw, and thus the highest L. edodes growth rate is associated with the presence of these compounds.

Qualidade de frutos da tangerina 'Ponkan' após poda de recuperação Quality of 'Ponkan' tangerine tree after recovering pruning

Directory of Open Access Journals (Sweden)

Vander Mendonça

2006-04-01

Full Text Available Objetivou-se com esta pesquisa avaliar a qualidade de frutos de tangerineira 'Ponkan' em três safras subseqüentes aos tratamentos: poda de topo no rebaixamento da copa e poda da parte baixa da planta (saia. O experimento foi conduzido na Fazenda Vito Crincoli, localizada no município de Perdões - MG. O delineamento experimental utilizado foi em blocos ao acaso, em esquema fatorial 4 x 2, sendo poda do topo (sem poda, poda a 3,0; 2,5 e 2,0 m e poda da saia (sem e com a poda com quatro repetições e três plantas úteis por parcela. Os diferentes tipos de poda não prejudicaram a qualidade de frutos de tangerineira 'Ponkan' nas três safras subseqüente as podas. Após o terceiro ano as plantas que sofreram podas mais severas produziram frutos com peso superiores, demonstrando a viabilidade da poda na recuperação da qualidade dos frutos.This research aimed to test top pruning effect on lowering the top canopy and pruning the lower part of the plant on the recovering of 12 years old 'Ponkan' tangerine tree. Plants were four meters height, 6x4 spacing, grafted on 'Cravo' lemon tree. This experiment was carried out at Vito Crincoli' s Farm in Perdões, MG, Brazil . It was used a randomized block experimental design in a factorial scheme of 4x2, top pruning (without pruning, pruning at 3.0; 2.5 and 2.0m from soil level and circumference pruning (with and without pruning with four replications. The useful plot was constituted of three tangerine plants. After third year of treatment plants that had been under more severe pruning gave higher fruit weight. Indicating the used of pruning to recover fruit quality.

On the use of a pruning prior for neural networks

DEFF Research Database (Denmark)

Goutte, Cyril

1996-01-01

We address the problem of using a regularization prior that prunes unnecessary weights in a neural network architecture. This prior provides a convenient alternative to traditional weight-decay. Two examples are studied to support this method and illustrate its use. First we use the sunspots...

A Pruning Neural Network Model in Credit Classification Analysis

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Yajiao Tang

2018-01-01

Full Text Available Nowadays, credit classification models are widely applied because they can help financial decision-makers to handle credit classification issues. Among them, artificial neural networks (ANNs have been widely accepted as the convincing methods in the credit industry. In this paper, we propose a pruning neural network (PNN and apply it to solve credit classification problem by adopting the well-known Australian and Japanese credit datasets. The model is inspired by synaptic nonlinearity of a dendritic tree in a biological neural model. And it is trained by an error back-propagation algorithm. The model is capable of realizing a neuronal pruning function by removing the superfluous synapses and useless dendrites and forms a tidy dendritic morphology at the end of learning. Furthermore, we utilize logic circuits (LCs to simulate the dendritic structures successfully which makes PNN be implemented on the hardware effectively. The statistical results of our experiments have verified that PNN obtains superior performance in comparison with other classical algorithms in terms of accuracy and computational efficiency.

Oral manifestations associated with systemic complications of prune belly syndrome.

Science.gov (United States)

Pessoa, Larissa; Galvão, Virgilio

2013-01-01

Prune belly syndrome (PBS) is a rare congenital malformation of unknown etiology characterized by congenital abnormalities including abdominal wall flaccidity, urinary tract alterations, and bilateral cryptorchidism. The incidence of the syndrome is between 1/35000 and 1/50000 live births and there is little information about the oral findings. The present case describes the oral manifestations of a 15-year-old boy diagnosed with PBS. The findings include enamel hypoplasia associated with generalized hypocalcemic dental lines. In the radiographic exam, pronounced demineralization of the trabecular bone of the jaws, loss of lamina dura in all the teeth, and discontinuity of the mandibular cortical bone were observed. Prune belly syndrome is a rare disease, whose clinical dental aspects are not pathognomonic of the syndrome. The comprehension of the systemic mechanism of PBS and its comorbidities enable an understanding of the systemic etiologic factors associated with oral manifestations. Copyright © 2013 Elsevier Inc. All rights reserved.

Chemical composition of biomass generated in the guava tree pruning

Science.gov (United States)

Camarena-Tello, Julio César; Rocha-Guzmán, Nuria Elizabeth; Gallegos-Infante, José Alberto; González-Laredo, Rubén Francisco; Pedraza-Bucio, Fabiola Eugenia; López-Albarrán, Pablo; Herrera-Bucio, Rafael; Rutiaga-Quiñones, José Guadalupe

2015-01-01

Psidium guajava L. (Myrtaceae) is a native plant of Central America and is now widely cultivated in many tropical regions of the world for the fruit production. In Mexico, in the guava orchards common practices to control fruit production are: water stress, defoliation and pruning. In this study, we report the chemical composition of the biomass (branches and leaves) generated in the pruning practices. The results ranged as follows: pH (4.98-5.88), soda solubility (39.01-70.49 %), ash (1.87-8.20 %); potassium and calcium were the major inorganic elements in ash. No heavy metals were detected in the studied samples; total solubility (15.21-46.60 %), Runkel lignin (17.77-35.26 %), holocellulose (26.56 -69.49 %), α-cellulose (15.53-35.36 %), hemicelluloses (11.02-34.12 %), tannins in aqueous extracts (3.81-9.06 %), and tannins in ethanolic extracts (3.42-15.24 %). PMID:26417359

Produção da tangerineira 'ponkan' após poda de recuperação Production of 'ponkan' tangerine tree after pruning recovery

Directory of Open Access Journals (Sweden)

Vander Mendonça

2008-02-01

Full Text Available Objetivou esta pesquisa testar o efeito da poda de topo no rebaixamento da copa e poda da saia, na recuperação da tangerineira 'Ponkan' com 12 anos de idade, altura de 4 metros, espaçadas de 6 x 4 m e enxertadas sobre limoeiro 'Cravo'. O experimento foi conduzido na Fazenda Vito Crincoli localizada no município de Perdões, MG. O delineamento experimental utilizado foi em blocos ao acaso, em esquema fatorial 4 x 2, sendo poda do topo (sem poda, poda a 3,0; 2,5 e 2,0m e poda da saia (sem e com a poda com quatro repetições. A parcela útil foi constituída de três plantas. As podas drásticas de topo prejudicaram a primeira produção, contudo a partir do segundo ano após a poda, as plantas apresentaram boa recuperação. Esse comportamento foi confirmado na terceira colheita, quando os diferentes tipos de podas do topo não se diferenciaram na produtividade, sendo que o tratamento com poda da saia foi superior ao sem poda.This research aimed to test top pruning effect on the lowering of plant canopy, pruning the lower canopy on the recover of 12 years old 'Ponkan' tangerine tree, 4 meters height, 6 x 4 spaced and grafted on 'Cravo' lemon rootstock. This experiment was carried out at Vito Crincoli's Farm in Perdões, MG. It was carried out under randomized plots in a factorial scheme of 4x2, top pruning (without pruning, pruning at 3.0; 2.5 and 2.0 m and skirt pruning (with and without pruning with 4 replications. Plot size was composed by three plants. Heavy pruning of the top canopy lowered the first tree yield, however, and in the begining of the second year, the plants showed a very good recover. The same behavior was seem for the third harvest when several kinds of top pruning did not differ in the yield. Skirt pruning treatment was superior to that without any pruning.

Combining soft decision algorithms and scale-sequential hypotheses pruning for object recognition

Energy Technology Data Exchange (ETDEWEB)

Kumar, V.P.; Manolakos, E.S. [Northeastern Univ., Boston, MA (United States)

1996-12-31

This paper describes a system that exploits the synergy of Hierarchical Mixture Density (HMD) estimation with multiresolution decomposition based hypothesis pruning to perform efficiently joint segmentation and labeling of partially occluded objects in images. First we present the overall structure of the HMD estimation algorithm in the form of a recurrent neural network which generates the posterior probabilities of the various hypotheses associated with the image. Then in order to reduce the large memory and computation requirement we propose a hypothesis pruning scheme making use of the orthonormal discrete wavelet transform for dimensionality reduction. We provide an intuitive justification for the validity of this scheme and present experimental results and performance analysis on real and synthetic images to verify our claims.

Degree Associated Edge Reconstruction Number of Graphs with Regular Pruned Graph

Directory of Open Access Journals (Sweden)

P. Anusha Devi

2015-10-01

Full Text Available An ecard of a graph $G$ is a subgraph formed by deleting an edge. A da-ecard specifies the degree of the deleted edge along with the ecard. The degree associated edge reconstruction number of a graph $G,~dern(G,$ is the minimum number of da-ecards that uniquely determines $G.$  The adversary degree associated edge reconstruction number of a graph $G, adern(G,$ is the minimum number $k$ such that every collection of $k$ da-ecards of $G$ uniquely determines $G.$ The maximal subgraph without end vertices of a graph $G$ which is not a tree is the pruned graph of $G.$ It is shown that $dern$ of complete multipartite graphs and some connected graphs with regular pruned graph is $1$ or $2.$ We also determine $dern$ and $adern$ of corona product of standard graphs.

An Adaptive Pruning Algorithm for the Discrete L-Curve Criterion

DEFF Research Database (Denmark)

Hansen, Per Christian; Jensen, Toke Koldborg; Rodriguez, Giuseppe

2004-01-01

SVD or regularizing CG iterations). Our algorithm needs no pre-defined parameters, and in order to capture the global features of the curve in an adaptive fashion, we use a sequence of pruned L-curves that correspond to considering the curves at different scales. We compare our new algorithm...

Can early thinning and pruning lessen the impact of pine plantations ...

African Journals Online (AJOL)

dwelling insects found in pine tree plantations in Patagonia. We compared the abundance, species richness and composition of the beetle and ant assemblages within 16-year-old pine stands (n = 10) subjected to early pruning and thinning (i.e. ...

Outcomes of renal replacement therapy in boys with prune belly syndrome

DEFF Research Database (Denmark)

Yalcinkaya, Fatos; Bonthuis, Marjolein; Erdogan, Beyza Doganay

2018-01-01

BACKGROUND: As outcome data for prune belly syndrome (PBS) complicated by end-stage renal disease are scarce, we analyzed characteristics and outcomes of children with PBS using the European Society for Pediatric Nephrology/European Renal Association-European Dialysis and Transplant Association...

Outcomes of renal replacement therapy in boys with prune belly syndrome

DEFF Research Database (Denmark)

Yalcinkaya, Fatos; Bonthuis, Marjolein; Erdogan, Beyza Doganay

2018-01-01

BACKGROUND: As outcome data for prune belly syndrome (PBS) complicated by end-stage renal disease are scarce, we analyzed characteristics and outcomes of children with PBS using the European Society for Pediatric Nephrology/European Renal Association-European Dialysis and Transplant Association (...

Nitrogen fixation and effects of pruning on Gliricidia sepium and Leucaena leucocephala

International Nuclear Information System (INIS)

Liyanage, M.S. de

1998-01-01

This 7-year study examined genetic variability in N 2 fixation by Gliricidia sepium and the N 2 -fixing capacity in G. sepium and Leucaena leucocephala as influenced by frequency of pruning, age, and shade from coconut. The 15 N-dilution method was used with the non-nodulating tree legume Senna siamea as the non-fixing reference. There were significant differences in total dry matter, N yield and N 2 -fixation capacity among four G. sepium provenances. Gliricidia had higher values than Leucaena for dry matter, N yield, and amount of N fixed; %Ndfa was comparable in both species (47-55%). A substantial amount (18%) of fixed N 2 was present in the roots of both species. In a long-term study aimed at comparing the effect of pruning practices and age of trees, G. sepium grown under coconut outperformed L. leucocephala in terms of dry matter, N yield and amounts of N 2 fixation. Coconut saplings supplied with G. sepium and L. leucocephala prunings as green manure grew better than those supplied with S. siamea; the fraction of coconut-sapling N obtained from Gliricidia and Leucaena was 40 and 36%, respectively. These results suggest that G. sepium, which demonstrated a high potential for biomass production and N 2 fixation, is appropriate for interplanting with coconut palms. Also, S. Siamea was found to be a suitable reference species. (author)

Effect of root pruning and irrigation regimes on leaf water relations and xylem ABA and ionic concentrations in pear trees

DEFF Research Database (Denmark)

Wang, Yufei; Bertelsen, Marianne G.; Petersen, Karen Koefoed

2014-01-01

relation characteristics, stomatal conductance and xylem sap abscisic acid (ABA) and ionic concentrations. Results showed that leaf water potential, leaf turgor and stomatal conductance of root pruning (RP) treatment was significantly lower than those of non-root pruning (NP) treatment indicating that root...

Should Pruning be a Pre-Processor of any Linear System?

Science.gov (United States)

Sen, Syamal K.; Ramakrishnan, Suja; Agarwal, Ravi P.; Shaykhian, Gholam Ali

2011-01-01

There are many real-world problems whose mathematical models turn out to be linear systems Ax = b, where A is an m x n matrix. Each equation of the linear system is an information. An information, in a physical problem, such as 4 mangoes, 6 bananas, and 5 oranges cost $10, is mathematically modeled as an equation 4x(sub 1) + 6x(sub 2) + 5x(sub 3) = 10 , where x(sub 1), x(sub 2), x(sub 3) are each cost of one mango, that of one banana, and that of one orange, respectively. All the information put together in a specified context, constitutes the physical problem and need not be all distinct. Some of these could be redundant, which cannot be readily identified by inspection. The resulting mathematical model will thus have equations corresponding to this redundant information and hence are linearly dependent and thus superfluous. Consequently, these equations once identified should be better pruned in the process of solving the system. The benefits are (i) less computation and hence less error and consequently a better quality of solution and (ii) reduced storage requirements. In literature, the pruning concept is not in vogue so far although it is most desirable. It is assumed that at least one information, i.e. one equation is known to be correct and which will be our first equation. In a numerical linear system, the system could be slightly inconsistent or inconsistent of varying degree. If the system is too inconsistent, then we should fall back on to the physical problem (PP), check the correctness of the PP derived from the material universe, modify it, if necessary, and then check the corresponding mathematical model (MM) and correct it. In nature/material universe, inconsistency is completely nonexistent. If the MM becomes inconsistent, it could be due to error introduced by the concerned measuring device and/or due to assumptions made on the PP to obtain an MM which is relatively easily solvable or simply due to human error. No measuring device can usually

78 FR 63128 - Dried Prunes Produced in California; Increased Assessment Rate

Science.gov (United States)

2013-10-23

...; Increased Assessment Rate AGENCY: Agricultural Marketing Service, USDA. ACTION: Proposed rule. SUMMARY: This... the Regulatory Flexibility Act (RFA) (5 U.S.C. 601-612), the Agricultural Marketing Service (AMS) has... prunes. Dated: October 17, 2013. Rex A. Barnes, Associate Administrator, Agricultural Marketing Service...

The importance of pruning to the quality of wine grape fruits (Vitis vinifera L. cultivated under high-altitude tropical conditions

Directory of Open Access Journals (Sweden)

Pedro José Almanza-Merchán

2014-12-01

Full Text Available Since 1998, the Ain-Karim Vineyard has been growing different grape varieties for the production of high-altitude tropical wines in the municipality of Sutamarchan, located in the Alto Ricaurte region of Boyaca (Colombia. Pruning is used to limit the number and length of branches, generating a suitable balance between plant vigor and production; thereby, regulating fruit quantity and quality and ensuring reserves for the subsequent production. This study aimed to evaluate the effect of three pruning types (short = two buds on two spurs; long = five buds on three spurs and mixed = combination of short and long pruning types on the fruit quality of V. vinifera, Cabernet Sauvignon and Sauvignon Blanc varieties. To accomplish this, a completely randomized two-factor design was used. Physicochemical variables of fruit quality (fresh cluster weight, water content, total soluble solids (TSS, total titratable acidity (TTA, technical maturity index (TMI, and pH were determined at harvest. The long pruning type presented the highest values for the fresh cluster weight and TSS of the fruits from both varieties and a higher TMI in the Cabernet Sauvignon variety. These results indicate that, under the conditions of the vineyard, long pruning is the most suitable.

Jatropha curcas, L. Pruning Residues for Energy: Characteristics of an Untapped By-Product

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Luigi Pari

2018-06-01

Full Text Available Jatropha (Jatropha curcas, L. is an energy crop mainly cultivated for the oil-seed, and the oil is usually used as bio-fuel. However, few studies have reported information about the utilization of the wood as a fuel for boiler heating systems. With 2500 jatropha trees per hectare, it is possible to produce about 3 t·ha−1·y−1 of woody biomass from pruning. In addition, jatropha trees are commonly cut down to a height of 45 cm once every 10 years, with a production of 80 t·ha−1 of dry matter of woody biomass. The use of this biomass has not yet been investigated. During the European project JatroMed, woody biomass from jatropha pruning was collected in Morocco. Chemical and physical characteristics of the wood were conducted according to UNI EN ISO standards. The following jatropha wood characteristics have been analyzed: Moisture and ash contents, the ash melting point, heating value, and concentrations of C, H, N, and S. This research focused on the evaluation of the potential use of jatropha pruning for energy production, and the results represent critical data that is useful for future studies and business potential.

Using Multi-Spectral UAV Imagery to Extract Tree Crop Structural Properties and Assess Pruning Effects

Directory of Open Access Journals (Sweden)

Kasper Johansen

2018-06-01

Full Text Available Unmanned aerial vehicles (UAV provide an unprecedented capacity to monitor the development and dynamics of tree growth and structure through time. It is generally thought that the pruning of tree crops encourages new growth, has a positive effect on fruiting, makes fruit-picking easier, and may increase yield, as it increases light interception and tree crown surface area. To establish the response of pruning in an orchard of lychee trees, an assessment of changes in tree structure, i.e., tree crown perimeter, width, height, area and Plant Projective Cover (PPC, was undertaken using multi-spectral UAV imagery collected before and after a pruning event. While tree crown perimeter, width and area could be derived directly from the delineated tree crowns, height was estimated from a produced canopy height model and PPC was most accurately predicted based on the NIR band. Pre- and post-pruning results showed significant differences in all measured tree structural parameters, including an average decrease in tree crown perimeter of 1.94 m, tree crown width of 0.57 m, tree crown height of 0.62 m, tree crown area of 3.5 m2, and PPC of 14.8%. In order to provide guidance on data collection protocols for orchard management, the impact of flying height variations was also examined, offering some insight into the influence of scale and the scalability of this UAV-based approach for larger orchards. The different flying heights (i.e., 30, 50 and 70 m produced similar measurements of tree crown width and PPC, while tree crown perimeter, area and height measurements decreased with increasing flying height. Overall, these results illustrate that routine collection of multi-spectral UAV imagery can provide a means of assessing pruning effects on changes in tree structure in commercial orchards, and highlight the importance of collecting imagery with consistent flight configurations, as varying flying heights may cause changes to tree structural measurements.

Using Multi-Spectral UAV Imagery to Extract Tree Crop Structural Properties and Assess Pruning Effects

KAUST Repository

Johansen, Kasper

2018-04-18

Unmanned aerial vehicles (UAV) provide an unprecedented capacity to monitor the development and dynamics of tree growth and structure through time. It is generally thought that the pruning of tree crops encourages new growth, has a positive effect on fruiting, makes fruit-picking easier, and may increase yield, as it increases light interception and tree crown surface area. To establish the response of pruning in an orchard of lychee trees, an assessment of changes in tree structure, i.e. tree crown perimeter, width, height, area and Plant Projective Cover (PPC), was undertaken using multi-spectral UAV imagery collected before and after a pruning event. While tree crown perimeter, width and area could be derived directly from the delineated tree crowns, height was estimated from a produced canopy height model and PPC was most accurately predicted based on the NIR band. Pre- and post-pruning results showed significant differences in all measured tree structural parameters, including an average decrease in tree crown perimeter of 1.94 m, tree crown width of 0.57 m, tree crown height of 0.62 m, tree crown area of 3.5 m2, and PPC of 14.8%. In order to provide guidance on data collection protocols for orchard management, the impact of flying height variations was also examined, offering some insight into the influence of scale and the scalability of this UAV based approach for larger orchards. The different flying heights (i.e. 30, 50 and 70 m) produced similar measurements of tree crown width and PPC, while tree crown perimeter, area and height measurements decreased with increasing flying height. Overall, these results illustrate that routine collection of multi-spectral UAV imagery can provide a means of assessing pruning effects on changes in tree structure in commercial orchards, and highlight the importance of collecting imagery with consistent flight configurations, as varying flying heights may cause changes to tree structural measurements.

Evaluation of fungicides to protect pruning wounds from Botryosphaeriaceae species infections on almond trees

Directory of Open Access Journals (Sweden)

Diego OLMO

2017-05-01

Full Text Available In vitro efficacy of ten fungicides was evaluated against four Botryosphaeriaceae spp. (Diplodia seriata, Neofusicoccum luteum, N. mediterraneum and N. parvum associated with branch cankers on almond trees. Cyproconazole, pyraclostrobin, tebuconazole, and thiophanate-methyl were effective for the inhibition of mycelial growth of most of these fungi. An experiment on 3-year-old almond trees evaluated boscalid, mancozeb, thiophanate-methyl, pyraclostrobin and tebuconazole for preventative ability against infections caused by the four pathogens. Five months after pruning and fungicide application, lesion length measurements and isolation percentages showed no significant differences among the four pathogens after they were inoculated onto the trees, and also between the two inoculation times tested (1 or 7 d after fungicide application. Thiophanate-methyl was the most effective fungicide, resulting in the shortest lesion lengths and the lowest isolation percentages from artificially inoculated pruning wounds. This chemical is therefore a candidate for inclusion in integrated disease management, to protect pruning wounds from infections caused by species of Botryosphaeriaceae. This study represents the first approach to development of chemical control strategies for the management of canker diseases caused by Botryosphaeriaceae fungi on almond trees. 

Effect of irradiation, pruning and removal of in vitro formed roots on ex vitro growth in micropropagated grape

International Nuclear Information System (INIS)

Charbaji, T.; Ayyoubi, Z.

2002-06-01

In vitro rootstock (Ru 140) and Helwani variety were cultured on DSD1 media, were irradiated at low doses of gamma irradiation before acclimatization. Ru 140 were exposed to 0-5 Gy, while Helwani was exposed to 0-7 Gy. Then, the plants were divided into three different groups: in the first group the plant roots were pruned, in the second the plant roots were completely removed and in the third group the plant roots were kept intact (control). The ex vitro plants were observed after 45 days of planting. Shoots groeth, leaf number and dry weight of Ru 140 were significantly higher than those of the control when roots were pruned and 5 Gy was applied. Those parameters were negatively affected by root removal. Gamma irradiation had a positive effect on the control comparing to unirradiated plants. Root pruning had positive effects on shoot growth, leaf number and dry weight of helwani veriety, while root removal had a contrary effect on this variety. Gamma irradiation positively affected shoot growth and dry weight of control comparing to unirradiated plants, similar effect was observed on leaf number of control and pruned plant of Helwani. (author)

Effect of Irradiation, Pruning and Removal of In Vitro Formed Roots on Ex Vitro Growth in Micropropagated Grape

International Nuclear Information System (INIS)

Charabaji, T.; Ayyoubi, Z.; Karajoly, I

2007-01-01

In vitro rootstock (Ru 140) and Helwani variety were cultured on DSD1 media, were irradiated at low doses of gamma irradiation before acclimatization. Ru 140 was exposed to 0-5 Gy, while Helwani was exposed to 0-7 Gy. Then, the plants were divided into three different procedures, 1)- the plant roots were pruned, 2)- the plant roots were completely removed, 3)- the plant roots were kept intact (control). The ex vitro plants were observed after 45 days of planting. Shoots growth, leaf number and dry weight of Ru 140 were significantly higher than those of the control when roots were pruned and 5 Gy was applied. Those parameters were negatively affected by root removal. Gamma irradiation had a positive effect on the control comparing to unirradiated plants. Root pruning had positive effects on shoot growth, leaf number and dry weight of Helwani variety, while root removal had a contrary effect on this variety. Gamma irradiation positively affected shoot growth and dry weight of control comparing to unirradiated plants, similar effect was observed on leaf number of control and pruned plant of Helwani.

75 FR 67607 - Dried Prunes Produced in California; Increased Assessment Rate

Science.gov (United States)

2010-11-03

... Order 12988, Civil Justice Reform. Under the marketing order now in effect, California dried prune... DEPARTMENT OF AGRICULTURE Agricultural Marketing Service 7 CFR Part 993 [Doc. No. AMS-FV-10-0057... Marketing Service, USDA. ACTION: Final rule. SUMMARY: This rule increases the assessment rate established...

Urachal catheter provides new choice for long-term urinary diversion in prune belly syndrome.

Science.gov (United States)

Chen, I-Lun; Huang, Hsin-Chun; Lee, Shin-Yi; Liu, Chieh-An; Tain, You-Lin; Ou-Yang, Mei-Chen; Chao, Pei-Hsin

2011-02-01

Prune belly syndrome has been identified as a clinical triad of abdominal muscle deficiency, bilateral cryptorchidism, and urologic abnormalities. We present the case of a discordant monozygotic twin with prune belly syndrome and voiding dysfunction that was relieved by long-term urinary catheterization by way of the urachus. To the best of our knowledge, this alternative method has not been previously reported. We suggest that for newborn infants with long-term voiding dysfunction, if the urachus retains patency, urinary catheterization through the urachus could be a choice for urine drainage instead of cystostomy, providing a better cosmetic appearance and quality of life. Copyright © 2011 Elsevier Inc. All rights reserved.

DNA hypomethylation, transient neonatal diabetes, and prune belly sequence in one of two identical twins.

Science.gov (United States)

Laborie, Lene Bjerke; Mackay, Deborah J G; Temple, I Karen; Molven, Anders; Søvik, Oddmund; Njølstad, Pål Rasmus

2010-02-01

One known genetic mechanism for transient neonatal diabetes is loss of methylation at 6q24. The etiology of prune belly sequence is unknown but a genetic defect, affecting the mesoderm from which the triad abdominal muscle hypoplasia, urinary tract abnormalities, and cryptorchidism develop, has been suggested. We investigated a family, including one twin, with transient neonatal diabetes and prune belly sequence. Autoantibody tests excluded type 1 diabetes. Microsatellite marker analysis confirmed the twins being monozygotic. We identified no mutations in ZFP57, KCNJ11, ABCC8, GCK, HNF1A, HNF1B, HNF3B, IPF1, PAX4, or ZIC3. The proband had loss of methylation at the 6q24 locus TNDM and also at the loci IGF2R, DIRAS3, and PEG1, while the other family members, including the healthy monozygotic twin, had normal findings. The loss of methylation on chromosome 6q24 and elsewhere may indicate a generalized maternal hypomethylation syndrome, which accounts for both transient neonatal diabetes and prune belly sequence.

Stock Picking via Nonsymmetrically Pruned Binary Decision Trees

OpenAIRE

Anton Andriyashin

2008-01-01

Stock picking is the field of financial analysis that is of particular interest for many professional investors and researchers. In this study stock picking is implemented via binary classification trees. Optimal tree size is believed to be the crucial factor in forecasting performance of the trees. While there exists a standard method of tree pruning, which is based on the cost-complexity tradeoff and used in the majority of studies employing binary decision trees, this paper introduces a no...

Effects of long-term pruning, meristem origin, and branch order on the rooting of Douglas-fir stem cuttings.

Science.gov (United States)

D.L. Copes

1992-01-01

The rooting percentages of 14 Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) clones were examined annually from 1974 to 1988. The trees were 10 and 13 years old in 1974 and were pruned to 2.0 m in 1978 and 1979 and then recut annually to 0.5, 1.0, or 1.5 m, starting in 1983. The pruned trees showed no evidence of decreased rooting percentage...

Effect of pruning history on growth and dry mass partitioning of jatropha on a plantation site in Madagascar

International Nuclear Information System (INIS)

Rajaona, Arisoa M.; Brueck, Holger; Asch, Folkard

2011-01-01

While technical aspects of oil processing of seeds of jatropha are under intensive investigation, comparably little is known about the performance of jatropha in the field. We investigated the effects of water availability (rainfed versus irrigated) and pruning-induced differences in plant stature on growth, biomass partitioning, and canopy size at a plantation site in Madagascar in 2010. Plants of different pruning types differed in trunk height (43 versus 29 cm) and primary branches total length (171 versus 310 cm). The two pruning types had effects on dry mass formation and leaf area projection (LAP) during the vegetation period. Trees which had a shorter trunk and longer lateral branches produced more biomass and had a higher LAP. Total dry mass formation varied from 489 to 912 g m −2 and LAP from 3.26 to 7.37. Total aboveground biomass increased from 2.3 ± 0.5 to 4.89 ± 1.4 kg tree −1 and from 4.6 ± 1.8 to 8.9 ± 1.0 kg tree −1 for the pruning types with shorter and longer lateral branches, respectively. Growth of twigs and leaves was positively correlated with total length of branches. Relative dry mass allocation to branches, twigs and leaves, length of twigs per cm of branches and specific leaf area (13.57 ± 0.72 m 2 kg −1 ) were not affected by pruning and water supply. Trees with shorter branches had higher LAD. Results indicate that pruning type should be considered as a management tool to optimize biomass production. Detailed studies on effects of canopy size and shape on radiation interception and growth are required to improve the productivity of jatropha. -- Highlights: ▶ Correlation between branch length and newly formed twigs and leaves. ▶ Comparison of LAI and leaf area density in the field. ▶ Twigs per unit length of branches.

76 FR 53813 - Dried Prunes Produced in California; Decreased Assessment Rate

Science.gov (United States)

2011-08-30

... Reform. Under the marketing order now in effect, California dried prune handlers are subject to... DEPARTMENT OF AGRICULTURE Agricultural Marketing Service 7 CFR Part 993 [Doc. No. AMS-FV-11-0068... Marketing Service, USDA. ACTION: Interim rule with request for comments. SUMMARY: This rule decreases the...

Feasibility and early outcomes of robotic-assisted laparoscopic Mitrofanoff appendicovesicostomy in patients with prune belly syndrome.

Science.gov (United States)

Wille, Mark A; Jayram, Gautam; Gundeti, Mohan S

2012-01-01

To evaluate the feasibility and report our initial experience with Robotic-Assisted Laparoscopic Mitrofanoff Appendicovesicostomy (RALMA) in patients with prune belly syndrome. The Mitrofanoff appendicovesicostomy procedure uses the appendix to create an easily accessible continent, catheterizable channel into the urinary bladder. Historically, the procedure is performed by an open surgical approach in prune belly patients. We describe our initial experience herein. Between October 2008 and February 2010 three patients with prune belly syndrome underwent RALMA. The appendicovesicostomy anastomosis was performed on the anterior bladder wall and the stoma was brought to the umbilical site or right lower quadrant. At least 4 cm of detrusor backing was ensured. The appendicovesicostomy stent was left in place for 4 weeks postoperatively before initiation of catheterization. Mean age at surgery was 9.7 years (range 5-14 years). Blood loss volume was 20 mL in each case. Overall mean operative time was 352 min (range 319-402 min). There were no intraoperative complications and no open conversions. There was one postoperative complication in the form of wound infection. All patients are catheterizing their stomas and are continent at an average follow-up of 14.7 months (range 5-21 months). In our initial experience, RALMA is a feasible option with encouraging early experience for creating a continent catheterizable channel into the urinary bladder in patients with prune belly syndrome. © 2011 THE AUTHORS. BJU INTERNATIONAL © 2011 BJU INTERNATIONAL.

Mycotoxin risks and toxigenic fungi in date, prune and dried apricot among Mediterranean crops

Directory of Open Access Journals (Sweden)

Hayrettin OZER

2012-05-01

Full Text Available Dried fruit is fruit that is preserved by removing the original water content naturally, through sun drying or artificially, by the use of specialized dryers or dehydrators. Dried fruit has a long tradition of use dating back to the fourth millennium BC in Mesopotamia and is prized because of its sweet taste, nutritive value and long shelf life. Traditional dried fruits such as raisins, figs, dates, apricots and prunes have been a staple of Mediterranean diets for millennia. The Mediterranean region is very favourable for production of dried fruits, not only with its climatic conditions, but also its exceptional fertile lands. Additionally, proximity to trade routes historically has allowed Mediterranean countries more access to dried fruits than landlocked countries. Today, dried fruit consumption is widespread. Nearly half of the dried fruits sold throughout the world are raisins, followed by dates, prunes (dried plums, figs, apricots, peaches, apples and pears. Dates, prunes, apricots, figs and raisins are the major dried fruits produced in the Mediterranean area. Dried fruits are not perishable but can support mold growth, some of which can produce mycotoxins. Occurence of toxigenic molds and mycotoxins on these dried fruits can be a problem in the Mediterranean basin, as in the other parts of the world, being a health hazard to the population as well as a trade issue for the export of local products. Although the most important mycotoxins occuring in Mediterranean crops are aflatoxins (B1, B2, G1 and G2 and ochratoxin A, the type and level of mycotoxins and toxigenic molds vary by crop and also by country and in some cases geographic location within a country. In this review mycotoxin risks and toxigenic fungi in date, prune and dried apricot among Mediterranean crops are reported and discussed.

Recurrent nephrogenic adenoma in a 10-year-old boy with prune belly syndrome : a case presentation.

Science.gov (United States)

Vemulakonda, Vijaya M; Kopp, Ryan P; Sorensen, Mathew D; Grady, Richard W

2008-05-01

Nephrogenic adenoma is a rare benign lesion of the urinary tract that is associated with a history of irritation or injury of the urothelium. Predisposing factors include infection, calculi, surgery, trauma, and renal transplantation. Nephrogenic adenoma commonly presents with lower urinary tract symptoms or hematuria. We present the case of recurrent nephrogenic adenoma in a 10-year-old boy with a history of prune belly syndrome and discuss management of this disease in the pediatric population. To our knowledge this represents the first reported case of recurrent nephrogenic adenoma associated with prune belly syndrome.

The Effect of Green Pruning on the Yield and Fruit Quality of the Crawling Grape Vines Cultivar Keshmeshy in the Climatic Conditions of Shirvan

Directory of Open Access Journals (Sweden)

F. Sadeghian

2016-02-01

Full Text Available Introduction: Green pruning or summer pruning completes winter pruning, and it is conducted during the growing season. The purpose of green pruning is to maximize yield of high quality grapes. Green pruning in fruit trees improves light penetration and increases the quality of fruits. The objectives of this research were to determine the influence of green pruning on fruit quantitative and qualitative attributes in grapevine cultivar 'keshmeshi'. Materials and Methods: The present research was undertaken in Shirvan, Northern Khorasan province. The vines were highly uniform, 17 years old and all had equal vegetative growth strength.The planting distances were 3 × 3 m. The present study was conducted on cultivar 'Keshmeshi' that is considered to be one of the best grapevine cultivars mostly used for raisin production as well as table fresh fruits. In order to evaluate the effect of green pruning on different quantitative and qualitative attributes of fruits in cultivar "keshmeshi", the experiment was carried out in two way randomized complete block design with 12 treatments and three replications. Vines were pruned three times including full bloom, two weeks after full bloom and veraison (eight weeks after full bloom. Pruning was carried out in three levels including tipping after two, four or six nodes above the final cluster. The characteristics studied were cluster weight, berry weight, cluster length and width, berry length and width, number of cluster and berry, vine yield, leaf area, soluble solid, total acidity, pH, berry color, berry sunscald and number of shot berry. The SAS software (SAS, version 9.1 was used for statistical analysis of the recorded data. The mean comparison was performed based on Duncan's multiple range tests at %5 and %1 levels. Results and Discussion: The results of this study indicate that the severity of green pruning has no significant effect on the number and width of berries. This treatment also had no

Effect of irradiation, pruning and removal of in vitro formed roots on ex vitro growth in micro propagated grape

International Nuclear Information System (INIS)

Charbaji, T.; Ayyoubi, Z.

2003-01-01

In vitro rootstock (Ru 140) and Helwani variety were cultured on DSD1 media, were irradiated at low doses of gamma irradiation before acclimatization. Ru 140 were exposed to 0-5 Gy, while Helwani was exposed to 0-7 Gy. Then, the plants were divided into three different groups: in the first group the plant roots were pruned, in the second the plant roots were completely removed and in the third group the plant roots were kept intact (control). The ex vitro plants were observed after 45 days of planting. Shoots growth, leaf number and dry weight of Ru 140 were significantly higher than those of the control when roots were pruned and 5 Gy was applied. Those parameters were negatively affected by root removal. Gamma irradiation had a positive effect on the control comparing to unirradiated plants. Root pruning had positive effects on shoot growth, leaf number and dry weight of Helwani variety, while root removal had a contrary effect on this variety. Gamma irradiation positively affected shoot growth and dry weight of control comparing to unirradiated plants, similar effect was observed on leaf number of control and pruned plant of Helwani. (author)

Prune belly anomaly on prenatal ultrasound as a presenting feature of ectrodactyly-ectodermal dysplasia-clefting syndrome (EEC).

Science.gov (United States)

Janssens, S; Defoort, P; Vandenbroecke, C; Scheffer, H; Mortier, G

2008-01-01

We report on a fetus with prune belly anomaly presenting at 16 weeks gestation. Clinical evaluation after birth revealed other malformations reminiscent of the EEC syndrome. This diagnosis was also suspected in the mother and finally confirmed in both relatives by identification of a heterozygous mutation (p.R204W) in the p63 gene. With this paper we confirm the previously reported occurrence of prune belly anomaly in the EEC syndrome, however here in this family proven by genetic analysis.

A favorable outcome following 32 vesicocentesis and amnioinfusion procedures in a fetus with severe prune belly syndrome.

Science.gov (United States)

Galati, Vincenzo; Beeson, James H; Confer, Stephen D; Frimberger, Dominic; Campbell, Jeffrey B; Ramji, Faridali G; Kropp, Bradley P

2008-04-01

Patients with severe prune belly syndrome rarely survive beyond the first days of life. We present a case of prune belly syndrome that initially presented with severe oligohydramnios, megacystis and associated poor urine biochemistries. Due to an anteriorly located placenta the patient was referred to three major centers, but was turned down because of the unfavorable prognostic findings. Therefore, fetal intervention was performed with 32 vesicocentesis and amnioinfusion procedures. Despite the unfavorable prenatal findings, and having undergone numerous fetal interventions, the birth resulted in a viable infant.

Síndrome de Prune Belly- Relato de caso

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Anna Catarina Rocha Ferreira

2018-03-01

Full Text Available A Síndrome de Prune Belly (SPB é caracterizada por sintomas que se organizam em uma tríade baseada pela ausência, deficiência ou hipoplasia congênita de toda musculatura abdominal além de alterações do trato urinário acompanhada de criptorquidia bilateral.  O objetivo deste estudo foi relatar um caso clínico desta grave síndrome e apresentar um breve protocolo de atendimento Fisioterapêutico. O caso relatado é de um paciente de 03 anos, sexo masculino com criptorquidia bilateral, mal- formação da musculatura abdominal e dificuldade respiratória fazendo uso de traqueostomia e sonda nasoenteral, foi investigado na Faculdade de Ciências e Educação Sena Aires em Valparaiso de Goiás, onde foi submetido a um protocolo fisioterapêutico. Por ser uma síndrome grave é necessário um diagnóstico eficaz para uma rápida intervenção fisioterapêutica, pois assim será possível conhecer as limitações desses pacientes e prestar um atendimento eficaz com o objetivo de melhorar a qualidade de vida e sua inserção na sociedade promovendo o bem-estar da criança, além de servir como norteador de novas pesquisas na área, sobretudo aquelas com poucas evidências. Descritores: Síndrome de Prune Belly; Anormalidades congênitas; Parede abdominal; Criptorquidismo.

Symbiotic nitrogen fixation and yield of Pachyrhizus Erosus (L) urban cultivars and Pachyrhizus Ahipa (WEDD) parodi landraces as affected by flower pruning

DEFF Research Database (Denmark)

Castellanos, J.Z.; Zapata, F.; Badillo, V.

1997-01-01

biomass without N fertiliser application. In some climatic regions P. erosus is reproductively pruned in order to obtain economic yields, but little is known about how the pruning influences the capacity of these tuber legumes to fix nitrogen. Two experiments were carried out to investigate the effect...

Thyroid hormone is required for pruning, functioning and long-term maintenance of afferent inner hair cell synapses.

Science.gov (United States)

Sundaresan, Srividya; Kong, Jee-Hyun; Fang, Qing; Salles, Felipe T; Wangsawihardja, Felix; Ricci, Anthony J; Mustapha, Mirna

2016-01-01

Functional maturation of afferent synaptic connections to inner hair cells (IHCs) involves pruning of excess synapses formed during development, as well as the strengthening and survival of the retained synapses. These events take place during the thyroid hormone (TH)-critical period of cochlear development, which is in the perinatal period for mice and in the third trimester for humans. Here, we used the hypothyroid Snell dwarf mouse (Pit1(dw)) as a model to study the role of TH in afferent type I synaptic refinement and functional maturation. We observed defects in afferent synaptic pruning and delays in calcium channel clustering in the IHCs of Pit1(dw) mice. Nevertheless, calcium currents and capacitance reached near normal levels in Pit1(dw) IHCs by the age of onset of hearing, despite the excess number of retained synapses. We restored normal synaptic pruning in Pit1(dw) IHCs by supplementing with TH from postnatal day (P)3 to P8, establishing this window as being critical for TH action on this process. Afferent terminals of older Pit1(dw) IHCs showed evidence of excitotoxic damage accompanied by a concomitant reduction in the levels of the glial glutamate transporter, GLAST. Our results indicate that a lack of TH during a critical period of inner ear development causes defects in pruning and long-term homeostatic maintenance of afferent synapses. © 2015 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.

Production of fuel ethanol from steam-explosion pretreated olive tree pruning

Energy Technology Data Exchange (ETDEWEB)

Cristobal Cara; Encarnacion Ruiz; Mercedes Ballesteros; Paloma Manzanares; Ma Jose Negro; Eulogio Castro [University of Jaen, Jaen (Spain). Department of Chemical, Environmental and Materials Engineering

2008-05-15

This work deals with the production of fuel ethanol from olive tree pruning. This raw material is a renewable, low cost, largely available, and lacking of economic alternatives agricultural residue. Olive tree pruning was submitted to steam explosion pre-treatment in the temperature range 190-240{sup o}C, with or without previous impregnation by water or sulphuric acid solutions. The influence of both pre-treatment temperature and impregnation conditions on sugar and ethanol yields was investigated by enzymatic hydrolysis and simultaneous saccharification and fermentation on the pretreated solids. Results show that the maximum ethanol yield (7.2 g ethanol/100 g raw material) is obtained from water impregnated, steam pretreated residue at 240{sup o}C. Nevertheless if all sugars solubilized during pre-treatment are taken into account, up to 15.9 g ethanol/100 g raw material may be obtained (pre-treatment conditions: 230{sup o}C and impregnation with 1% w/w sulphuric acid concentration), assuming theoretical conversion of these sugars to ethanol. 29 refs., 2 figs., 5 tabs.

Type V Pouch Colon, Prune Belly Syndrome, and Congenital Anterior Urethrocutaneous Fistula.

Science.gov (United States)

Raj, Prince; Birua, Hirendra

2017-01-01

Congenital pouch colon (CPC) or short colon syndrome is a rare type of anorectal malformation(ARM). Type V is the rarest form of CPC. We present a 1-day-old male child with type V CPC with prune belly syndrome and congenital anterior urethrocutaneous fistula (CAUF).

Formulation of an alginate-vineyard pruning waste composite as a new eco-friendly adsorbent to remove micronutrients from agroindustrial effluents.

Science.gov (United States)

Vecino, X; Devesa-Rey, R; Moldes, A B; Cruz, J M

2014-09-01

The cellulosic fraction of vineyard pruning waste (free of hemicellulosic sugars) was entrapped in calcium alginate beads and evaluated as an eco-friendly adsorbent for the removal of different nutrients and micronutrients (Mg, P, Zn, K, N-NH4, SO4, TN, TC and PO4) from an agroindustrial effluent (winery wastewater). Batch adsorption studies were performed by varying the amounts of cellulosic adsorbent (0.5-2%), sodium alginate (1-5%) and calcium chloride (0.05-0.9M) included in the biocomposite. The optimal formulation of the adsorbent composite varied depending on the target contaminant. Thus, for the adsorption of cationic contaminants (Mg, Zn, K, N-NH4 and TN), the best mixture comprised 5% sodium alginate, 0.05M calcium chloride and 0.5% cellulosic vineyard pruning waste, whereas for removal of anionic compounds (P, SO4 and PO4), the optimal mixture comprised 1% sodium alginate, 0.9M calcium chloride and 0.5% cellulosic vineyard pruning waste. To remove TC from the winery wastewater, the optimal mixture comprised 3% of sodium alginate, 0.475M calcium chloride and 0.5% cellulosic vineyard pruning waste. Copyright © 2014 Elsevier Ltd. All rights reserved.

Nephrogenic adenoma of the bladder in a prune belly syndrome patient: case report and review of the literature.

Science.gov (United States)

Broecker, Justine S; Steelman, Charlotte K; Broecker, Bruce H; Shehata, Bahig M

2011-01-01

Nephrogenic adenoma (NA) is a rare lesion of the urinary tract widely considered to be a metaplastic response to urothelial injury. Herein, we present the case of an 8-year-old male with prune belly syndrome who presented with gross hematuria. Investigation revealed a bladder mass; however, upon cystoscopic examination, multiple polypoid lesions were identified. Microscopic examination revealed NA of the bladder. To our knowledge, this is the second reported case of NA of the bladder in association with prune belly syndrome.

Air lateral root pruning affects longleaf pine seedling root system morphology

Science.gov (United States)

Shi-Jean Susana Sung; Dave Haywood

2016-01-01

Longleaf pine (Pinus palustris) seedlings were cultured with air lateral root pruning (side-vented containers, VT) or without (solid-walled containers, SW). Seedling root system morphology and growth were assessed before planting and 8 and 14 months after planting. Although VT seedlings had greater root collar diameter than the SW before planting,...

Planting and care of fine hardwood seedlings: Fertilizing, pruning, and thinning

Science.gov (United States)

James McKenna; Keith Woeste

2004-01-01

This publication outlines the cultural operations of pruning, fertilizing, and thinning that can greatly enhance the timber value of a plantation. This summary is based on the findings of many individuals. While there are alternatives to many of the recommended practices and differences of opinion existing among professionals, our purpose is to give the landowner a...

Characteristics of rose mosaic diseases

Directory of Open Access Journals (Sweden)

Marek S. Szyndel

2013-12-01

Full Text Available Presented review of rose diseases, associated with the mosaic symptoms, includes common and yellow rose mosaic, rose ring pattern, rose X disease, rose line pattern, yellow vein mosaic and rose mottle mosaic disease. Based on symptomatology and graft transmissibility of causing agent many of those rose disorders are called "virus-like diseases" since the pathogen has never been identified. However, several viruses were detected and identified in roses expressing mosaic symptoms. Currently the most prevalent rose viruses are Prunus necrotic ringspot virus - PNRSV, Apple mosaic virus - ApMV (syn. Rose mosaic virus and Arabis mosaic virus - ArMV Symptoms and damages caused by these viruses are described. Tomato ringspot virus, Tobacco ringspot virus and Rose mottle mosaic virus are also mentioned as rose pa thogcns. Methods of control of rose mosaic diseases are discussed.

Dynamical pruning of static localized basis sets in time-dependent quantum dynamics

NARCIS (Netherlands)

McCormack, D.A.

2006-01-01

We investigate the viability of dynamical pruning of localized basis sets in time-dependent quantum wave packet methods. Basis functions that have a very small population at any given time are removed from the active set. The basis functions themselves are time independent, but the set of active

Combustion of a Pb(II)-loaded olive tree pruning used as biosorbent

Energy Technology Data Exchange (ETDEWEB)

Ronda, A., E-mail: alirg@ugr.es [Department of Chemical Engineering, University of Granada, 18071 Granada (Spain); Della Zassa, M. [Department of Industrial Engineering, University of Padua, 35131 Padova (Italy); Martín-Lara, M.A.; Calero, M. [Department of Chemical Engineering, University of Granada, 18071 Granada (Spain); Canu, P. [Department of Industrial Engineering, University of Padua, 35131 Padova (Italy)

2016-05-05

Highlights: • The fate of Pb during combustion at two scales of investigation was studied. • Results from combustion in a flow reactor and in the thermobalance were consistent. • The Pb contained in the solid remained in the ashes. • The Pb does not interfere in the use of OTP as fuel. • The combustion of Pb(II)-loaded OTP does not cause environmental hazards. - Abstract: The olive tree pruning is a specific agroindustrial waste that can be successfully used as adsorbent, to remove Pb(II) from contaminated wastewater. Its final incineration has been studied in a thermobalance and in a laboratory flow reactor. The study aims at evaluating the fate of Pb during combustion, at two different scales of investigation. The flow reactor can treat samples approximately 10{sup 2} larger than the conventional TGA. A detailed characterization of the raw and Pb(II)-loaded waste, before and after combustion is presented, including analysis of gas and solids products. The Pb(II)-loaded olive tree pruning has been prepared by a previous biosorption step in a lead solution, reaching a concentration of lead of 2.3 wt%. Several characterizations of the ashes and the mass balances proved that after the combustion, all the lead presents in the waste remained in ashes. Combustion in a flow reactor produced results consistent with those obtained in the thermobalance. It is thus confirmed that the combustion of Pb(II)-loaded olive tree pruning is a viable option to use it after the biosorption process. The Pb contained in the solid remained in the ashes, preventing possible environmental hazards.

The prune belly anomaly: heterogeneity and superficial X-linkage mimicry.

Science.gov (United States)

Riccardi, V M; Grum, C M

1977-01-01

The genetic, clinical, and necropsy findings of 2 brothers with the prune belly anomaly are presented and the literature reviewed. The combined data emphasise the clinical and genetic heterogeneity of the disorder and show that in at least some instances a heritable component may be the primary insult. The most likely heritable explanation involves a two-step autosomal dominant mutation with sex-limited expression that partially mimics X-linkage. PMID:144797

Quadratus lumborum block for post-operative pain relief in patient with Prune belly syndrome.

Science.gov (United States)

Garg, Chitra; Khanna, Sangeeta; Mehta, Yatin

2017-10-01

Abdominal field blocks are commonly used as part of multimodal analgesia for post-operative pain relief in patients undergoing abdominal surgery. Conventionally, transversus abdominis plane block is used, but has the disadvantage of limited spread only to T10-T12 segments, providing only partial pain relief. The new quadratus lumborum (QL) block has the advantage of providing wider sensory block from T6 to L1 and thus has an evolving role in opioid-free anaesthesia. Opioid-induced cough depression, urinary retention, and drowsiness can be problematic in patients with Prune belly syndrome, who have deficient abdominal muscles and myriad of genitourinary problems. We report a case of a young male with Prune belly syndrome, who had a pain-free post-operative period after high inguinal orchidectomy with unilateral QL block.

Application of the pessimistic pruning to increase the accuracy of C4.5 algorithm in diagnosing chronic kidney disease

Science.gov (United States)

Muslim, M. A.; Herowati, A. J.; Sugiharti, E.; Prasetiyo, B.

2018-03-01

A technique to dig valuable information buried or hidden in data collection which is so big to be found an interesting patterns that was previously unknown is called data mining. Data mining has been applied in the healthcare industry. One technique used data mining is classification. The decision tree included in the classification of data mining and algorithm developed by decision tree is C4.5 algorithm. A classifier is designed using applying pessimistic pruning in C4.5 algorithm in diagnosing chronic kidney disease. Pessimistic pruning use to identify and remove branches that are not needed, this is done to avoid overfitting the decision tree generated by the C4.5 algorithm. In this paper, the result obtained using these classifiers are presented and discussed. Using pessimistic pruning shows increase accuracy of C4.5 algorithm of 1.5% from 95% to 96.5% in diagnosing of chronic kidney disease.

MG Travessia: a coffee arabica cultivar productive and responsive to pruning

OpenAIRE

Carvalho, Gladyston Rodrigues; Bartholo, Gabriel Ferreira; Pereira, Antônio Alves; Rezende, Juliana Costa de; Botelho, Cesar Elias; Oliveira, Antônio Carlos Baião de; Silva, Felipe Lopes da

2017-01-01

Abstract This paper presents the results of progeny 1190-1170-2, which was recorded as ‘MGS Travessia’ and selected based on its performance in the state of Minas Gerais. The cultivar has short size, cylindrical canopy, high yield capacity, high vegetative vigor, very satisfactory husk/bean ratio, grain quality compatible to traditional cultivars, and is very responsive to skeleton pruning.

MG Travessia: a coffee arabica cultivar productive and responsive to pruning

Directory of Open Access Journals (Sweden)

Gladyston Rodrigues Carvalho

2017-06-01

Full Text Available This paper presents the results of progeny 1190-1170-2, which was recorded as ‘MGS Travessia’ and selected based on its performance in the state of Minas Gerais. The cultivar has short size, cylindrical canopy, high yield capacity, high vegetative vigor, very satisfactory husk/bean ratio, grain quality compatible to traditional cultivars, and is very responsive to skeleton pruning.

On failure of the pruning technique in "error repair in shift-reduce parsers"

NARCIS (Netherlands)

Bertsch, E; Nederhof, MJ

A previous article presented a technique to compute the least-cost error repair by incrementally generating configurations that result from inserting and deleting tokens in a syntactically incorrect input. An additional mechanism to improve the run-time efficiency of this algorithm by pruning some

Putative recombination events and evolutionary history of five economically important viruses of fruit trees based on coat protein-encoding gene sequence analysis.

Science.gov (United States)

Boulila, Moncef

2010-06-01

To enhance the knowledge of recombination as an evolutionary process, 267 accessions retrieved from GenBank were investigated, all belonging to five economically important viruses infecting fruit crops (Plum pox, Apple chlorotic leaf spot, Apple mosaic, Prune dwarf, and Prunus necrotic ringspot viruses). Putative recombinational events were detected in the coat protein (CP)-encoding gene using RECCO and RDP version 3.31beta algorithms. Based on RECCO results, all five viruses were shown to contain potential recombination signals in the CP gene. Reconstructed trees with modified topologies were proposed. Furthermore, RECCO performed better than the RDP package in detecting recombination events and exhibiting their evolution rate along the sequences of the five viruses. RDP, however, provided the possible major and minor parents of the recombinants. Thus, the two methods should be considered complementary.

EVALUATION OF THE WORK CONDITIONS OF ACTIVITIES OF URBAN TREE PRUNING

Directory of Open Access Journals (Sweden)

Nilton César Fiedler

2007-03-01

Full Text Available this work analyzed the work environment in the trees pruning activities in the urban arborization, comparison with the values of the legislation and the practical application of results to provide a better comfort, security, health, welfare to workers, and also a better efficiency and quality of the work. The weather conditions, the noise levels, the light conditions and vibration were analyzed using suitable ergonomic methods. The weather conditions in the work environment were according the permissible values in the legislation (NR15 for index of humid bulb and globe thermometer (IBUTG of 25°C for the activities of pruning, with exception of the schedule to twelve hours (26,2°C, the hours of working should be of 30 minutes of work and 30 minutes of rest. The noise levels found in the activities of cut were 105,7 dB (A and bucking were 103.9 dB (A, above the level permited by legislation (NR15. The minimum light conditions values were acceptable for legislation (NBR 5413/92, but the global indices were too high being able to cause problems to the worker health. The vibration conditions were acceptable.

Canopy and leaf composition drive patterns of nutrient release from pruning residues in a coffee agroforest.

Science.gov (United States)

Tully, Katherine L; Lawrence, Deborah

2012-06-01

In a coffee agroforest, the crop is cultivated under the shade of fruit-bearing and nitrogen (N)-fixing trees. These trees are periodically pruned to promote flowering and fruiting as well as to make nutrients stored in tree biomass available to plants. We investigated the effect of canopy composition and substrate quality on decomposition rates and patterns of nutrient release from pruning residues in a coffee agroforest located in Costa Rica's Central Valley. Initial phosphorus (P) release was enhanced under a canopy composed solely of N-fixing, Erythrina poeppigiana compared to a mixed canopy of Erythrina and Musa acuminata (banana). Both initial and final N release were similar under the two canopy types. However, after five months of decomposition, a higher proportion of initial N had been released under the single canopy. Although patterns of decomposition and nutrient release were not predicted by initial substrate quality, mass loss in leaf mixtures rates were well predicted by mean mass loss of their component species. This study identifies specific pruning regimes that may regulate N and P release during crucial growth periods, and it suggests that strategic pruning can enhance nutrient availability. For example, during the onset of rapid fruit growth, a two-species mixture may release more P than a three-species mixture. However, by the time of the harvest, the two- and three-species mixtures have released roughly the same amount of N and P. These nutrients do not always follow the same pattern, as N release can be maximized in single-species substrates, while P release is often facilitated in species mixtures. Our study indicates the importance of management practices in mediating patterns of nutrient release. Future research should investigate how canopy composition and farm management can also mediate on-farm nutrient losses.

Quadratus lumborum block for post-operative pain relief in patient with Prune belly syndrome

Directory of Open Access Journals (Sweden)

Chitra Garg

2017-01-01

Full Text Available Abdominal field blocks are commonly used as part of multimodal analgesia for post-operative pain relief in patients undergoing abdominal surgery. Conventionally, transversus abdominis plane block is used, but has the disadvantage of limited spread only to T10–T12 segments, providing only partial pain relief. The new quadratus lumborum (QL block has the advantage of providing wider sensory block from T6 to L1 and thus has an evolving role in opioid-free anaesthesia. Opioid-induced cough depression, urinary retention, and drowsiness can be problematic in patients with Prune belly syndrome, who have deficient abdominal muscles and myriad of genitourinary problems. We report a case of a young male with Prune belly syndrome, who had a pain-free post-operative period after high inguinal orchidectomy with unilateral QL block.

Effects of root pruning in sour cherry (Prunus cersus) "Stevnsbaer"

DEFF Research Database (Denmark)

Toldam-Andersen, Torben; Jensen, Nauja Lisa; Dencker, Ivar Blücher

2007-01-01

with trees of middle age on rootstock Colt were selected. Three trees with intact root systems were pulled up in each of the orchards. Based on the architecture of the root systems, a pruning distance of 30-35 cm from the trunk was used, removing approximately 30 percent of the roots. The one-sided root...

Effect of Staking and Pruning on the Growth and Yield of Cucumber ...

African Journals Online (AJOL)

A field trial was conducted to evaluate the effect of pruning and staking on the vegetative growth and yield of cucumber ( Cucumis sativus L.). The experiment was a 3 x 2 factorial laid out in Randomized Complete Block Design (RCBD) with five replications. The results showed that vine length, number of flowers, total ...

Selective pruning in pineapple plants as means to reduce heterogeneity in fruit quality

NARCIS (Netherlands)

Fassinou Hotegni, V.N.; Lommen, W.J.M.; Struik, P.C.; Agbossou, E.K.

2015-01-01

Heterogeneity in fruit quality (size and taste) is a major problem in pineapple production chains. The possibilities were investigated of reducing the heterogeneity in pineapple in the field by pruning slips on selected plants, in order to promote the fruit growth on these plants. Slips are side

Pruning dwarf mistletoe brooms reduces stress on Jeffrey pines, Cleveland National Forest, California

Science.gov (United States)

Robert F. Scharpf; Richard S. Smith; Detlev Vogler

1987-01-01

Western dwarf mistletoe (Arceuthobium campylopodum) is a damaging parasite of Jeffrey pines (Pinus jeffreyi) in southern California. Infected branches that develop into brooms are believed to reduce tlee vigor and increase mortality. Brooms were pruned from Jeffrey pines with varying levels of dwarf mistletoe infection and live...

Growth following pruning of young loblolly pine trees: some early results

Science.gov (United States)

Ralph L. Amateis; Harold E. Burkhart

2006-01-01

In the spring of 2000, a designed experiment was established to study the effects of pruning on juvenile loblolly pine (Pinus taeda L.) tree growth and the subsequent formation of mature wood. Trees were planted at a 3 m x 3 m square spacing in plots of 6 rows with 6 trees per row, with the inner 16 trees constituting the measurement plot. Among the...

Adaptive covariation between the coat and movement proteins of prunus necrotic ringspot virus.

Science.gov (United States)

Codoñer, Francisco M; Fares, Mario A; Elena, Santiago F

2006-06-01

The relative functional and/or structural importance of different amino acid sites in a protein can be assessed by evaluating the selective constraints to which they have been subjected during the course of evolution. Here we explore such constraints at the linear and three-dimensional levels for the movement protein (MP) and coat protein (CP) encoded by RNA 3 of prunus necrotic ringspot ilarvirus (PNRSV). By a maximum-parsimony approach, the nucleotide sequences from 46 isolates of PNRSV varying in symptomatology, host tree, and geographic origin have been analyzed and sites under different selective pressures have been identified in both proteins. We have also performed covariation analyses to explore whether changes in certain amino acid sites condition subsequent variation in other sites of the same protein or the other protein. These covariation analyses shed light on which particular amino acids should be involved in the physical and functional interaction between MP and CP. Finally, we discuss these findings in the light of what is already known about the implication of certain sites and domains in structure and protein-protein and RNA-protein interactions.

Pregnancy outcome in a woman with prune belly syndrome.

Science.gov (United States)

Hillman, R Tyler; Garabedian, Matthew James; Wallerstein, Robert J

2012-11-30

Prune belly syndrome is a rare congenital syndrome that primarily affects male fetuses. Affected men are universally infertile; however, there is a paucity of information published on the reproductive potential of affected women. Pregnancy outcomes in affected women have not been described in the literature. We describe the case of pregnancy in an affected woman. Her pregnancy progressed without complication. Her fetus had no stigmata of the syndrome. Her labour and delivery were, however, complicated by a prolonged second stage of labour and need for vacuum-assisted vaginal delivery.

Prune belly syndrome with pouch colon and absent dermatome.

Science.gov (United States)

Baba, Aejaz A; Hussain, Syed A; Shera, Altaf H; Patnaik, Rekha

2010-01-01

Prune belly syndrome (PBS) is a rare congenital constellation of defects in pediatric surgical practice. Although anorectal anomalies have been reported in association with PBS, only few case of pouch colon with PBS has been reported. [1] In addition, our patient had deficient abdominal wall with absent dermatome in left upper quadrant, which has never been reported in the English literature. This association with abdominal wall deficiency and absent dermatome not only strengthens the theory of mesodermal arrest in the etiology of PBS but also points towards a defect in the ectodermal development.

7 CFR 944.350 - Safeguard procedures for avocados, grapefruit, kiwifruit, olives, oranges, prune variety plums...

Science.gov (United States)

2010-01-01

... plums (fresh prunes), and table grapes for processing; (3) Olives for processing into oil; (4) Grapefruit for animal feed; or (5) Avocados for seed shall obtain an “Importer's Exempt Commodity Form” (FV-6...

How young trees cope with removal of whole or parts of shoots: an analysis of local and distant responses to pruning in 1-year-old apple (Malus xdomestica; Rosaceae) trees.

Science.gov (United States)

Fumey, Damien; Lauri, Pierre-Éric; Guédon, Yann; Godin, Christophe; Costes, Evelyne

2011-11-01

Manipulation of tree architecture by pruning provides an experimental context to analyze architectural plasticity resulting from competition between developing organs. The objective of this study was to quantify the effects of the removal of all or part of shoots through pruning on the redistribution of growth and flowering at spatial and temporal levels. Two types of pruning cuts were applied: (1) heading cuts of either the main stem or laterals and (2) thinning cuts (i.e., complete removal) of laterals. These two types of cuts were applied in summer and winter on 1-yr-old cultivars of Fuji and Braeburn apple trees. Tree topology and geometry were described over 3 years, and responses were analyzed for both local and distant scales. Heading cuts induced quasi-deterministic local responses on pruned axes, whereas responses to thinning cuts were more variable. For the main stem and laterals, responses over greater spatial and temporal scales were highlighted with (1) stronger growth the year after summer pruning and (2) modification of branching and flowering along the unpruned parts after winter pruning. Pruning typically induced growth redistribution toward traumatic reiterations and enhanced growth of the remaining unpruned axes with a concomitant decrease of flowering and cambial growth. Although results could be interpreted in relation to the root-shoot balance, tree responses appeared highly cultivar-specific.

Hepatoblastoma and prune belly syndrome: a potential association.

Science.gov (United States)

Becknell, Brian; Pais, Priya; Onimoe, Grace; Rangarajan, Hemalatha; Schwaderer, Andrew L; McHugh, Kirk; Ranalli, Mark A; Hains, David S

2011-08-01

Prune belly syndrome (PBS) is a congenital anomaly characterized by the clinical triad of lax abdominal musculature, bilateral cryptorchidism, and abnormalities of the kidney and urinary tract. Previous reports of malignancy in patients with PBS have been limited to germ cell tumors. Hepatoblastoma (HBL) is the most common hepatic malignancy of childhood, affecting approximately 100 children each year in the USA. We describe a set of 4 pediatric patients with PBS and HBL. All individuals were born after 2002. These subjects lacked genetic, natal, or environmental factors known to confer risk of HBL. The occurrence of PBS and HBL in these patients constitutes a novel potential association.

The Analysis of Alpha Beta Pruning and MTD(f) Algorithm to Determine the Best Algorithm to be Implemented at Connect Four Prototype

Science.gov (United States)

Tommy, Lukas; Hardjianto, Mardi; Agani, Nazori

2017-04-01

Connect Four is a two-player game which the players take turns dropping discs into a grid to connect 4 of one’s own discs next to each other vertically, horizontally, or diagonally. At Connect Four, Computer requires artificial intelligence (AI) in order to play properly like human. There are many AI algorithms that can be implemented to Connect Four, but the suitable algorithms are unknown. The suitable algorithm means optimal in choosing move and its execution time is not slow at search depth which is deep enough. In this research, analysis and comparison between standard alpha beta (AB) Pruning and MTD(f) will be carried out at the prototype of Connect Four in terms of optimality (win percentage) and speed (execution time and the number of leaf nodes). Experiments are carried out by running computer versus computer mode with 12 different conditions, i.e. varied search depth (5 through 10) and who moves first. The percentage achieved by MTD(f) based on experiments is win 45,83%, lose 37,5% and draw 16,67%. In the experiments with search depth 8, MTD(f) execution time is 35, 19% faster and evaluate 56,27% fewer leaf nodes than AB Pruning. The results of this research are MTD(f) is as optimal as AB Pruning at Connect Four prototype, but MTD(f) on average is faster and evaluates fewer leaf nodes than AB Pruning. The execution time of MTD(f) is not slow and much faster than AB Pruning at search depth which is deep enough.

Prune belly syndrome in a set of twins, a family tragedy: Case report ...

African Journals Online (AJOL)

We report prune belly syndrome, a rare congenital malformation, in a set of twins delivered to a young couple with a history of three previous first trimester spontaneous abortions, discordant HIV seropositivity and antenatal ultrasound report that indicated renal abnormalities in only one of the twins. The challenges of ...

Scab severity in relation to hedge pruning pecan trees in the Southeastern USA

Science.gov (United States)

Scab is the most damaging disease of pecan in the Southeastern USA. Pecan trees are tall (up to 30+ m), and managing disease in the upper canopy is problematic. Hedge pruning trees to ~12 m is being explored to facilitate efficacy of ground-based fungicide sprays, but resulting vigorous shoot growth...

Small-Scale Effect of Pine Stand Pruning on Snowpack Distribution in the Pyrenees Observed with a Terrestrial Laser Scanner

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Jesús Revuelto

2016-07-01

Full Text Available Forests in snow-dominated areas have substantial effects on the snowpack and its evolution over time. Such interactions have significant consequences for the hydrological response of mountain rivers. Thus, the impact of forest management actions on the snow distribution, and hence the storage of water in the form of snow during winter and spring, is a major concern. The results of this study provide the first detailed comparison of the small-scale effect of forest characteristics on the snowpack distribution, assessed prior to and following major modification of the structure of the canopy by pruning of the lower branches of the trees to 3 m above the ground. This is a common management practice aimed at reducing the spread of forest fires. The snowpack distribution was determined using terrestrial laser scanning (LiDAR technology at a high spatial resolution (0.25 m over a 1000 m2 study area during 23 survey dates over three snow seasons in a small study area in the central Pyrenees. The pruning was conducted during summer following the snow season in the second year of the study (i.e., the study duration encompassed two seasons prior to canopy pruning and one following. Principal component analysis (PCA was used to identify recurring spatial patterns of snow distribution. The results showed that pruning reduced the average radius of the canopy of trees by 1.2 m, and increased the clearance around the trunks, as all the branches that formerly contacted the ground were removed. However, the impact on the snowpack was moderate. The PCA revealed that the spatial configuration of the snowpack did not change significantly, as the principal components included survey days from different periods of the snow season, and did not discriminate days surveyed prior to and following pruning. Nevertheless, removal of the lower branches reduced the area beneath the canopy by 36%, and led to an average increase in total snow depth of approximately 14%.

7 CFR 993.159 - Payments for services performed with respect to reserve tonnage prunes.

Science.gov (United States)

2010-01-01

..., incidental to acquisition or storage; (ii) Direct labor costs, which include those for weighing, receiving... overhead costs, which include those for supervision, indirect labor, fuel, power and water, taxes and... the costs for necessary services rendered by handlers in connection with reserve prunes. (2) Such...

Using Multi-Spectral UAV Imagery to Extract Tree Crop Structural Properties and Assess Pruning Effects

KAUST Repository

Johansen, Kasper; Raharjo, Tri; McCabe, Matthew

2018-01-01

Unmanned aerial vehicles (UAV) provide an unprecedented capacity to monitor the development and dynamics of tree growth and structure through time. It is generally thought that the pruning of tree crops encourages new growth, has a positive effect

The effects of planting methods and head pruning on seed yield and yield components of medicinal pumpkin (Cucurbita pepo subsp. Pepo convar. Pepo var. styriaca) at low temperature areas.

Science.gov (United States)

Bahrami, R Nikkhah; Khodadadi, M; Pirivatlo, S Piry; Hassanpanah, D

2009-03-15

This experiment carried out to evaluate the effects of planting methods (seed sowing and transplanting) and head pruning (no pruning, pruning after 12th node and pruning after 16th node) on yield and yield components such as number of branches (sub-branches) per plant, fruits per plant, growth, fruit size, weight of fresh fruit, weight of seeds per fruit, number of seeds per fruit and seed yield of medicinal pumpkin. The experiment was carried out based of factorial experiment with Randomized Completely Blocks Design (RCBD) by three replications in Ardabil Agricultural and Natural Resources Researches Station at 2007. Seedlings were grown in heated greenhouse. When the climatic condition became suitable and seedlings were at the four leaves stage, both seeds and seedlings were planted at the same time in the farm. Maintenance operations were done during the growth season. Head pruning treatments were done the forecast time. The results showed that the planting methods had significant effect on the number of ripen fruits per plant, fruits diameter, weight of seeds per fruit, weight of 1000 seeds and seed yield and had no significant effect on the other traits. Also the results indicated that head pruning treatments had significant effects on the number of branches per plant, growth and seed yield and no significant on the other traits. In this experiment the most seed yield (997.8 kg ha(-1)) obtained from transplanting method with head pruning after 12th node and the least seed yield obtained from control.

Unique features of prune belly syndrome in laparoscopic surgery.

Science.gov (United States)

Saxena, Amulya K; Brinkmann, Olaf A

2007-08-01

The aim of this study was to evaluate the laparoscopic abdominal access modifications in children with prune belly syndrome undergoing a first stage Fowler-Stephens procedure. Eleven consecutive boys underwent a transperitoneal laparoscopic bilateral first stage Fowler-Stephens procedure. Patient age ranged from 1.5 to 3 years (mean age 2.2 years). In these patients, the floppy abdominal wall required a modified approach with regard to access technique, insufflation pressures, and work port stabilization methods. Duration of the procedures and intraoperative technical challenges encountered were prospectively documented. Mean operative time was 40 minutes (range 30 to 75 minutes), and all procedures were completed without any complications. Forceful insertion of ports was not possible, and all ports were introduced under complete open access. Larger volumes of carbon dioxide were used in the initial part of our series, when the ports were not sutured to the abdominal wall. An abdominal pressure of 8 mmHg was maintained in all patients and was considered optimal for the procedures. Short laparoscopy instruments (240 mm) were unsuitable for the procedures and had to be replaced by longer instruments (310 mm or 430 mm). Technical modifications are required to the approach in laparoscopic abdominal access to overcome the challenges posed by the floppy abdominal wall in prune belly patients. Open access, suture fixation of the optic and work ports, use of threaded sleeve ports, and use of proper length of laparoscopy instruments are valuable modifications to overcome the technical hurdles posed by these patients.

Growth of Gypsophila paniculata According to the Pruning Time and Ridge Position in Sub-alpine Area

International Nuclear Information System (INIS)

Cheong, D.C.; Lim, H.C.; Song, Y.J.; Park, H.B.

2008-01-01

This study was carried out to investigate the growth of Gypsophila paniculata affected by pruning time (July 10, July 18, and July 25) and ridge position (middle or window side) under south-north oriented plastic house in sub-alpine area. The average night temperature was similar between the two ridges, but the average day temperature and soil temperature were higher at the middle ridge; particularly, there was distinct difference after late October. Also the accumulative solar radiation was higher at the middle ridge than the window side ridge owing to the shading by neighboring plastic house and the structure of plastic house. The root activity, photosynthetic rate and transpiration rate of plants surveyed in late October were inclined to be more increased at the middle than the window side ridge. The flowering traits at the pruning time of July 10 and July 18 were similar between the two ridges, but the flower malformation rate was higher at the middle ridge. On the other hand, in case of the pruning time of July 25, the blooming was advanced by 13 days, and the flowering traits such as flower stalk length and branch number were better; also, the flower malformation and rosette formation rate decreased at the middle ridge, because of its higher air and soil temperature and the accumulative solar radiation

Two- and three-dimensional prenatal sonographic diagnosis of prune-belly syndrome.

Science.gov (United States)

Chen, Lizhu; Cai, Ailu; Wang, Xiaoguang; Wang, Bing; Li, Jingyu

2010-06-01

We report the prenatal diagnosis of 6 cases of Prune-belly syndrome in the 2(nd) trimester. The sonographic diagnosis was based on the findings of oligohydramnios, renal anomalies, and a lower abdominal cystic mass representing the abnormal dilatation of the bladder on conventional 2-dimensional sonographic examination. We discuss the role of Doppler imaging and 3-dimensional sonography as complementary methods to conventional sonography. Four of our 6 cases were confirmed with associated defects.

Prune belly syndrome in uniovular twin: a new finding or a case of ...

African Journals Online (AJOL)

A case of Prune Belly Syndrome associated with High Anorectal Anomaly and Unilateral Lung Cyst occurring in a uniovular twin is hereby presented. The twin brother has no clinical evidence of congenital anomaly in any system. We therefore ask; is this a new finding or a case of improper documentation of data. Keywords: ...

Prune belly syndrome with pouch colon and absent dermatome

Directory of Open Access Journals (Sweden)

Baba Aejaz

2010-01-01

Full Text Available Prune belly syndrome (PBS is a rare congenital constellation of defects in pediatric surgical practice. Although anorectal anomalies have been reported in association with PBS, only few case of pouch colon with PBS has been reported. [1] In addition, our patient had deficient abdominal wall with absent dermatome in left upper quadrant, which has never been reported in the English literature. This association with abdominal wall deficiency and absent dermatome not only strengthens the theory of mesodermal arrest in the etiology of PBS but also points towards a defect in the ectodermal development.

Long-term follow-up of total abdominal wall reconstruction for prune belly syndrome.

Science.gov (United States)

Lesavoy, Malcolm A; Chang, Eric I; Suliman, Ahmed; Taylor, Jason; Taylor, James; Kim, Sara E; Ehrlich, Richard M

2012-01-01

Prune belly syndrome is a rare, congenital condition that consists of a major deficiency or hypoplasia of the abdominal wall musculature, bilateral cryptorchidism, and genitourinary tract malformations. Reconstruction of the abdominal wall in these patients has presented a challenge to plastic surgeons throughout the years. The authors previously described a technique for total abdominal wall reconstruction that permitted simultaneous urinary tract reconstruction and bilateral orchiopexy. This innovative procedure used medial advancement of the fascia in a "double-breasted" fashion with preservation of the umbilicus. The authors reviewed their experience with this particular technique in one of the largest series of patients in the literature and the series with the longest follow-up. Twenty patients underwent total abdominal wall reconstruction with simultaneous urinary tract reconstruction and orchiopexy with a mean follow-up of 20.4 years. There were no major complications noted during this period, and all patients were extremely satisfied with their postoperative result. Total abdominal wall reconstruction using the double-breasted technique in patients with prune belly syndrome is a safe and durable procedure that achieves excellent cosmetic results. Therapeutic, IV.

Concordant posterior urethral valves in male monochorionic twins with secondary prune belly syndrome.

Science.gov (United States)

Nouaili, Emira Ben Hamida; Chaouachi, Sihem; Nouira, Faouzi; Benmassoud, Ines; Laabidi, Kamel; Chaouachi, Beji; Marrakchi, Zahra

2008-12-01

Posterior urethral valves (PUVs), the most common congenital cause of lower urinary tract obstruction, have been described to occur in identical and nonidentical twins. Until now, reports have been published on 15 cases of PUVs. We report a new case of concordant PUVs in one set of male monochorionic twins with secondary Prune Belly Syndrome. The twins were born by elective cesarean section at 38 weeks of gestation to a 36-year-old mother, gravida 6, para 6. On ultrasound perfomed at 18 weeks's gestation, both fetuses showed signs of PUVs. At birth, physical examination of both revealed a secondary Prune Belly Syndrome (PBS). Postnatal renal ultrasound confirmed the diagnosis of PUV. The two infants underwent transurethral resection of the valves after a cystoscopic evaluation of the urethra. Since this procedure, their voiding has been unremarkable with stable renal function and sterile urine until their discharge. We have documented a rare association between VUP and PBS in two monochiorionic twins. More studies are needed to throw light on the significance of the present associated anomalies.

Prune Belly syndrome: A rare case report.

Science.gov (United States)

Samal, Sunil Kumar; Rathod, Setu

2015-01-01

Prune Belly syndrome (PBS) is a rare congenital anomaly of uncertain etiology almost exclusive to males. We report a case of term male baby born to a 39-year-old grand multipara with previous four normal vaginal births. There was no history of genetic or congenital anomaly in her family. Examination of the baby revealed hypotonia, deficient abdominal muscle, cryptorchidism, palpable kidney, and bladder. Ultrasound examination of the abdomen revealed bilateral gross hydronephrosis and megaureter. Provisional diagnosis of PBS was made and the baby was admitted in neonatal intensive care units for further management. Routine antenatal care with ultrasonography will help in detecting renal anomalies, which can be followed postnatally. Early diagnosis of this syndrome and determining its optimal treatment are very important in helping to avoid its fatal course.

Pseudo Prune Belly Syndrome: Diagnosis Revealed by Imaging - A Case Report and Brief Review.

Science.gov (United States)

Grover, Hemal; Sethi, Sanjay; Garg, Jatin; Ahluwalia, Amrit Pal

2017-01-01

Prune Belly Syndrome (PBS) is a rare entity, usually found in male neonates. It comprises complex urinary tract anomalies, bilateral undescended testis and absence of anterior abdominal wall muscles. Patients with unilateral abdominal wall deficiency, unilateral undescended testis and female neonates with abdominal wall laxity are classified as Pseudo Prune Belly syndrome (PPBS). Reports on PPBS do not highlight the radiological and imaging characteristics of this syndrome and the current literature on the role of newer imaging modalities, such as Magnetic Resonance Imaging (MRI), remains relatively sparse. We describe a new case of PPBS and emphasize the role of imaging, especially ultrasound and MRI in the process of diagnosis and briefly review the subject. A male infant of four months of age was referred for evaluation of left-sided cryptorchidism. Clinical examination revealed laxity of the left abdominal wall. Ultrasound examination of the abdomen, pelvis and scrotum was performed together with routine laboratory tests. Ultrasound examination was followed by intravenous urography, voiding cysto-urethrography and MRI of the abdomen. On ultrasound, the left testis was located in the inguinal canal, the right kidney was slightly enlarged and the left kidney could not be localized. Ultrasound appearances suggested chronic obstruction in the urinary bladder. Intravenous urography, voiding cysto-urethrography and MRI confirmed the ultrasound diagnosis and also revealed a left dysplastic kidney with a dilated, tortuous ureter. Clinical and imaging features were consistent with pseudo prune belly syndrome (PPBS). We report a new occurrence of PPBS, a rare entity. The imaging approach for a comprehensive evaluation of the renal system in PPBS, especially with MRI, is emphasized.

Produção da amoreira-preta 'Tupy' sob diferentes épocas de poda Productive of 'Tupy' blackberry under different pruning time

Directory of Open Access Journals (Sweden)

Marcelo Angelo Campagnolo

2012-02-01

Full Text Available A amora-preta é uma opção importante para fruticultura paranaense, porém não há informações a respeito do cultivo dessa frutífera nas condições subtropicais do Estado. O objetivo deste trabalho foi avaliar a influência da época de poda na produção da amoreira-preta 'Tupy'. O trabalho foi realizado em um pomar comercial, conduzido em sistema agroecológico. O delineamento experimental foi em blocos ao acaso, com quatro blocos e seis tratamentos (podas quinzenais realizadas durante o inverno. Em cada parcela, constituída de três plantas úteis, foram coletados dados fenológicos, produtivos e físico-químicos no ciclo de produção 2008/09 e 2009/10. Podas efetuadas no início de julho são as mais indicadas e podas tardias podem prejudicar o desempenho produtivo das amoreiras-pretas 'Tupy' no oeste do Paraná.The blackberry is an important option to fruit growers in Paraná State. However, there aren't trials performed in subtropical area in that State. The objective of this research was to evaluate the pruning time effects at season production of 'Tupy' blackberry. The research was conducted in a commercial orchard, in an agroecological system. The experimental design was randomized blocks with four blocks and six treatments (pruning time by fifteen days during the winter pruning. In each plot, which was consisted of three plants, it was collected phenological, productive and physical-chemical production cycle in 2008/09 and 2009/10. Pruning made in early July are the most suitable and late pruning can harm the productive performance of blackberry 'Tupy' in western Paraná.

Prune belly syndrome--report of 47 cases.

Science.gov (United States)

Woodhouse, C R; Ransley, P G; Innes-Williams, D

1982-01-01

Forty-seven cases of prune belly syndrome in children born between 1948 and 1977 are described. They have been classified into three groups according to the state of the urinary tract in the neonatal period. The results achieved in these cases form the basis of our present management. In group I, the most severely affected, early death is inevitable. In group 2 the children are ill as neonates; high diversion is often required and later reconstruction may be possible. Group 3 patients are healthy as neonates and little reconstructive surgery is required. The prognosis in groups 2 and 3 is good. Half the group 2 children and three-quarters of the group 3 children grew up normally with satisfactory renal function and health. It is important to establish free drainage of the urinary tract and avoid infection. Images Figure PMID:6128960

Impact of Early Pruning and Thinning on Lumber Grade Yield From Loblolly Pine

Science.gov (United States)

Alexander Clark; Mike Strub; Larry R. Anderson; H. Gwynne Lloyd; Richard F. Daniels; James H. Scarborough

2004-01-01

The Sudden Sawlog Study was established in 1954 near Crossett, AR, in a 9-year-old loblolly pine plantation to test the hypothesis that loblolly plantations can produce sawtimber in 30 years. To stimulate diameter and height growth and clear wood production, study plots were heavily thinned, trees pruned to 33 feet by age 24 years, under-story mowed, and growth of...

Thyroid hormone is required for the pruning of afferent type II spiral ganglion neurons in the mouse cochlea

Science.gov (United States)

Sundaresan, Srividya; Balasubbu, Suganthalakshmi; Mustapha, Mirna

2015-01-01

Afferent connections to the sensory inner and outer hair cells in the cochlea refine and functionally mature during the thyroid hormone (TH)- critical period of inner ear development that occurs perinatally in rodents. In this study, we investigated the effects of hypothyroidism on afferent type II innervation to outer hair cells (OHCs) using the Snell dwarf mouse (Pit1dw). Using a transgenic approach to specifically label type II spiral ganglion neurons, we found that a lack of TH causes persistence of excess type II SGN connections to the OHCs, as well as continued expression of the hair cell functional marker, otoferlin, in the OHCs beyond the maturation period. We also observed a concurrent delay in efferent attachment to the OHCs. Supplementing with TH during the early postnatal period from postnatal day (P) 3 to P4 reversed the defect in type II SGN pruning but did not alter otoferlin expression. Our results show that hypothyroidism causes a defect in the large-scale pruning of afferent type II spiral ganglion neurons in the cochlea, and a delay in efferent attachment and the maturation of otoferlin expression. Our data suggest that the state of maturation of hair cells, as determined by otoferlin expression, may not regulate the pruning of their afferent innervation. PMID:26592716

Surgical tactic of high bilateral abdominal testicular retention in patient with a prune belly syndrome

Directory of Open Access Journals (Sweden)

I. A. Panchenko

2014-11-01

Full Text Available Bilateral abdominal cryptorchism in combination with other defects of urogenital system and a prune belly syndrome keep within a syndrome of connective tissue dysplasia. In our medical center developed the method of surgical correction of a high bilateral abdominal testicular retention with preservation of vessels.

Surgical tactic of high bilateral abdominal testicular retention in patient with a prune belly syndrome

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I. A. Panchenko

2013-01-01

Full Text Available Bilateral abdominal cryptorchism in combination with other defects of urogenital system and a prune belly syndrome keep within a syndrome of connective tissue dysplasia. In our medical center developed the method of surgical correction of a high bilateral abdominal testicular retention with preservation of vessels.

Pseudo Prune Belly Syndrome: Diagnosis Revealed by Imaging – A Case Report and Brief Review

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Grover, Hemal; Sethi, Sanjay; Garg, Jatin; Ahluwalia, Amrit Pal

2017-01-01

Summary Background Prune Belly Syndrome (PBS) is a rare entity, usually found in male neonates. It comprises complex urinary tract anomalies, bilateral undescended testis and absence of anterior abdominal wall muscles. Patients with unilateral abdominal wall deficiency, unilateral undescended testis and female neonates with abdominal wall laxity are classified as Pseudo Prune Belly syndrome (PPBS). Reports on PPBS do not highlight the radiological and imaging characteristics of this syndrome and the current literature on the role of newer imaging modalities, such as Magnetic Resonance Imaging (MRI), remains relatively sparse. We describe a new case of PPBS and emphasize the role of imaging, especially ultrasound and MRI in the process of diagnosis and briefly review the subject. Case Report A male infant of four months of age was referred for evaluation of left-sided cryptorchidism. Clinical examination revealed laxity of the left abdominal wall. Ultrasound examination of the abdomen, pelvis and scrotum was performed together with routine laboratory tests. Ultrasound examination was followed by intravenous urography, voiding cysto-urethrography and MRI of the abdomen. On ultrasound, the left testis was located in the inguinal canal, the right kidney was slightly enlarged and the left kidney could not be localized. Ultrasound appearances suggested chronic obstruction in the urinary bladder. Intravenous urography, voiding cysto-urethrography and MRI confirmed the ultrasound diagnosis and also revealed a left dysplastic kidney with a dilated, tortuous ureter. Clinical and imaging features were consistent with pseudo prune belly syndrome (PPBS). Conclusions We report a new occurrence of PPBS, a rare entity. The imaging approach for a comprehensive evaluation of the renal system in PPBS, especially with MRI, is emphasized. PMID:28580040

Teores de carboidratos em pessegueiros submetidos a diferentes intensidades de poda verde em clima tropical Levels of carbohydrates in peaches submitted to different intensity of green pruning in tropical climate

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Marcelo Rehder da Cunha Borba

2005-04-01

Full Text Available Com o objetivo de verificar a partição de assimilados entre a copa e raízes de pessegueiro, duas intensidades de poda verde, após a colheita dos frutos, foram efetuadas em pessegueiros 'Ouromel-2', na região de Piracicaba-SP: poda leve e poda de renovação (poda drástica. Os teores de carboidratos nas raízes e parte aérea foram determinados em vários estágios fenológicos da planta ao longo do ciclo. Verificou-se que existe uma fase de consumo de carboidratos, que vai deste a poda de dormência (poda seca até a maturação dos frutos e uma fase de acúmulo, que vai desde a maturação dos frutos até a queda das folhas. Plantas que sofreram poda leve apresentaram, de maneira geral, maiores teores de carboidratos ao longo do ciclo do que plantas que sofreram poda de renovação, apresentando, assim, maior potencial de produção.With the objective to verify the photosynthate partitioning in roots and canopy of peache trees, two intensity of green pruning: light pruning and renovation pruning (heavy pruning. After fruit harvest were evaluated in 'Ouromel-2' peach in Piracicaba-SP. The carbohydrates levels of roots and canopy were evaluated in several phonological stages of the tree during the crop cycle. It was verified that there is a phase of consumption of carbohydrates, from dormant pruning to the ripening of fruits, and a phase of accumulation of carbohydrates, from the ripening of fruits to the falling of the leaves. In general, plants lightly pruned showed higher levels of carbohydrates during the crop cycle if compared to heavily pruned plants, showing then, higher potential of production.

Épocas e intensidades de poda de frutificação na goiabeira ' Paluma' , em Pinheiros-ES Effect of pruning time and intensity on ' Paluma' guava trees, in Pinheiros, ES, Brazil

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Luiz Augusto Lopes Serrano

2008-12-01

Full Text Available Este trabalho teve como objetivo avaliar os efeitos de diferentes intensidades de poda de frutificação realizadas em diferentes épocas do ano sobre a fenologia e a produção da goiabeira 'Paluma', em Pinheiros-ES. As plantas foram submetidas a três intensidades de poda de frutificação (curta, média e longa, em quatro diferentes épocas (25-11-2005, 21-12-2005, 27-01-2006 e 23-02-2006. O ciclo da goiabeira 'Paluma', entre a poda até o início da colheita dos frutos, variou de 189 dias (podas em novembro e dezembro a 203 dias (poda em fevereiro. Independentemente da época de poda, as plantas submetidas à poda longa apresentaram maior emissão de brotos novos e maior número de ramos estabelecidos. As plantas submetidas à poda curta apresentaram menores números de brotos emitidos e de ramos estabelecidos, bem como menor índice de pegamento de frutos, menor número de frutos por planta e, conseqüentemente, menor produção; entretanto produziram frutos de maior peso médio em relação às plantas submetidas à poda longa. A maior produção e o maior número de frutos colhidos por planta ocorreram nas plantas podadas em fevereiro. A época e a intensidade da poda de frutificação afetam a brotação e a produção da goiabeira 'Paluma'.The objective of this work was to evaluate the effects of different pruning times and intensities on the phenology and yield of 'Paluma' guava trees, in Pinheiros, Espírito Santo State, Brazil. The plants were submitted to three pruning intensities (heavy, medium and light, in four dates (November 25, 2005; December 21, 2005; January 27, 2006 and February 23, 2006. The period between pruning and the beginning of fruit ripening varied from 189 (pruning in November and December to 203 days (pruning in February. Regardless of pruning time, the larger numbers of buds and established branches occurred in plants submitted to light pruning. Plants submitted to heavy pruning produced the smallest numbers of

Eficiência da poda em cafeeiros no controle da Xylella fastidiosa Prune efficiency in the control of Xylella fastidiosa in coffee trees

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Rachel Benetti Queiroz-Voltan

2006-01-01

management procedures have attenuated the disease incidence, such as the use of bacteria-free seedlings and insect vector control. Pruning is an important practice for optimization of coffee orchard production. Coffee growers refer to pruning as training; coffee tree training depends on the coffee plant type and environment, using traditional or drastic trimming. This research aimed at evaluating the efficiency of different prune procedures in the control of X. fastidiosa incidence in coffee commercial cultivars Acaiá IAC 474-19 and Catuaí Vermelho IAC 81. Eight plants of each cultivar were submitted to three pruning types (traditional, "skeleton cut" and trunking; and eight plants were not pruned (controls. Prior to pruning, five plant branches were collected for anatomical studies. Thereafter, five other branches from all treatments were collected in October/2004 (rainy period and June/2005 (dry period for the anatomical studies. No significant differences were observed for `Acaiá IAC 474-19' that presented lower proportion of xylem vessel obstruction independent of the prune treatment. Prune treatments in `Catuaí Vermelho IAC 81' were also not significantly different; however, plants submitted to dramatic trimmings such as the "skeleton cut" and trunking showed a trend for lower proportion of xylem vessel obstruction by the bacteria, in both rainy and dry periods. It was suggested that the drastic pruning procedures ("skeleton cut" and trunking might be advantageous for the Xyllela control in situations of high disease incidence.

Frequência e intensidade de poda em pomar jovem de laranjeiras 'Valência' sob manejo orgânico Frequency and intensity of pruning young 'Valencia' orange trees in orchards under organic culture system

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Emiliano Santarosa

2010-10-01

Full Text Available Este trabalho teve por objetivo avaliar o efeito da frequência e intensidade de poda sobre a produção e qualidade dos frutos da laranjeira 'Valência', enxertada sobre Poncirus trifoliata, em pomar jovem, sob sistema de manejo orgânico. O plantio foi realizado em agosto de 2001, em espaçamento de 5,0x2,5m, em Montenegro, Rio Grande do Sul (RS. Os tratamentos testados foram: A - Testemunha (sem poda; B - Poda anual de 15%; C - Poda bienal de 15%; D - Poda bienal de 30%; e E - Poda trienal de 30% do volume da copa. O delineamento experimental foi de blocos ao acaso, sendo quatro repetições e quatro plantas por parcela. Nas safras de 2006, 2007 e 2008, foram avaliados: número, massa total de frutos e massa média dos frutos, teor de sólidos solúveis totais (SST, acidez total titulável (ATT e relação SST/AT do suco dos frutos. Em pomares jovens, com menos de sete anos de idade, durante três safras consecutivas, verificou-se que as podas de frutificação não alteram a produção acumulada, nem a qualidade físico-química dos frutos, mas reduzem a produção no ano subsequente à execução da poda.This study evaluated the influence of frequency and intensity of pruning on young orchards, with organic management system, on the yield and fruit quality of 'Valencia' oranges. The trees were budded on Poncirus trifoliata rootstock and implanted in August, 2001, in Montenegro-RS. The pruning tested was: A - control, without pruning; B - annual pruning of 15%; C - biennial pruning of 15%; D - biennial pruning of 30% and E - three-year 30% pruning of the canopy volume. The experiment had a randomized complete-block design, with four-trees plots and four replications. The total fruit mass production was registered and the average weight fruit in the crops 2006, 2007 and 2008 was determined. The fruit quality, total soluble solids (TSS, total acids concentration (TTA and ratio (TSS/TTA were assessed. In orchards with fewer than seven years old

Pruning high-value Douglas-fir can reduce dwarf mistletoe severity and increase longevity in Central Oregon

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Helen M. Maffei; Gregory M. Filip; Nancy E. Grulke; Brent W. Oblinger; Ellis Q. Margolis; Kristen L. Chadwick

2016-01-01

Mid- to very large-sized Douglas-fir (Pseudotsuga menzieseii var. menziesii) that were lightly- to moderately-infected by dwarf mistletoe (Arceuthobium douglasii) were analyzed over a 14-year period to evaluate whether mechanical pruning could eradicate mistletoe (or at least delay the onset of severe infection) without...

Classification Based on Pruning and Double Covered Rule Sets for the Internet of Things Applications

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Zhou, Zhongmei; Wang, Weiping

2014-01-01

The Internet of things (IOT) is a hot issue in recent years. It accumulates large amounts of data by IOT users, which is a great challenge to mining useful knowledge from IOT. Classification is an effective strategy which can predict the need of users in IOT. However, many traditional rule-based classifiers cannot guarantee that all instances can be covered by at least two classification rules. Thus, these algorithms cannot achieve high accuracy in some datasets. In this paper, we propose a new rule-based classification, CDCR-P (Classification based on the Pruning and Double Covered Rule sets). CDCR-P can induce two different rule sets A and B. Every instance in training set can be covered by at least one rule not only in rule set A, but also in rule set B. In order to improve the quality of rule set B, we take measure to prune the length of rules in rule set B. Our experimental results indicate that, CDCR-P not only is feasible, but also it can achieve high accuracy. PMID:24511304

Classification based on pruning and double covered rule sets for the internet of things applications.

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Li, Shasha; Zhou, Zhongmei; Wang, Weiping

2014-01-01

The Internet of things (IOT) is a hot issue in recent years. It accumulates large amounts of data by IOT users, which is a great challenge to mining useful knowledge from IOT. Classification is an effective strategy which can predict the need of users in IOT. However, many traditional rule-based classifiers cannot guarantee that all instances can be covered by at least two classification rules. Thus, these algorithms cannot achieve high accuracy in some datasets. In this paper, we propose a new rule-based classification, CDCR-P (Classification based on the Pruning and Double Covered Rule sets). CDCR-P can induce two different rule sets A and B. Every instance in training set can be covered by at least one rule not only in rule set A, but also in rule set B. In order to improve the quality of rule set B, we take measure to prune the length of rules in rule set B. Our experimental results indicate that, CDCR-P not only is feasible, but also it can achieve high accuracy.

Marjane Satrapi’s Poulet aux Prunes: fetish, desire, and illusions

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Stefania Rimini

2013-07-01

Full Text Available Il saggio si propone di individuare e descrivere le sfumature erotiche e sentimentali del film Poulet aux prunes di Marjane Satrapi, felice adattamento dell’omonima graphic novel. Il racconto procede per scarti, ellissi, anticipazioni e flasback, dando luogo a una narrazione labirintica dalla singolare trama arabescante. Le sottili dinamiche seduttive messe in campo dal complesso stile di regia di Satrapi-Paronnaud vengono analizzate alla luce delle categorie feticistiche individuate da Massimo Fusillo, che offrono interessanti modelli di interazione fra desiderio e creatività. L’esito di tale indagine consente di ampliare il dibattito relativo al rapporto di scambio e interferenza fra oggetti, pulsioni e sguardi nel cinema contemporaneo.

PRUNE BELLY SYNDROME: CASE REPORT OF A FAILED MANAGEMENT IN A LOWINCOME COUNTRY.

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Marcella Schiavone

2016-04-01

Full Text Available Prune Belly Syndrome (PBS is a rare congenital syndrome characterized by three main features: abdominal wall flaccidity, bilateral intra-abdominal cryptorchidism, and urologic abnormalities. In this study we describe the case of a 2,600 gr baby, born at the Central Hospital of Beira, Mozambique. Our study confirms that in a low-income country only conservative management can be delivered, and therefore prognosis is worse and less effective than high-income countries.

Época de poda da figueira cultivada no estado de São Paulo Pruning time for fig trees in the state of São Paulo

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Orlando Rigitano

1963-01-01

Full Text Available No Estado de São Paulo as figueiras (Ficus carica L. são anualmente submetidas a um tipo de poda hibernal que consiste na eliminação quase total da copa formada na estação anterior. Com a finalidade de estudar o comportamento de figueiras podadas em diferentes épocas durante o inverno, foi iniciado em 1960, em Campinas, um experimento com cinco épocas de poda no período de 1.° de maio a 1.° de setembro. São apresentados os dados de produção, por tratamento obtidos em 1962 e 1963, relativos ao número e ao pêso de figos, assim como os pesos médios de uma fruta. Os dados de 1963, revelaram diferenças significativas e permitiram várias conclusões. A poda feita em 1.° de agôsto ofereceu os melhores resultados, embora sem diferir significativamente daquela executada em 1.° de julho. Como era esperado, as podas levadas a efeito nas épocas extremas, isto é, em princípios de maio e de setembro, resultaram nas produções mais baixas. Observou-se tendência da obtenção de colheitas mais precoces e figos mais pesados nos tratamentos mais produtivos.With a view to compare the effects on fruit bearing, pruning of fig trees was carried out in Campinas, State of São Paulo, during the dormant season of the plant, at 5 different dates, namely on the 1st day of each of the months of May, June, July, August and September. Pruning was started as soon as the plants became more or less dormant in the fall and was continued until vegetation again appeared at the end of winter. The pruning operation took place for two following years and at the dates mentioned all the new branches were cut back to short stubs. The experimental plot consisted of 30 trees of the variety "Roxo de Valinhos" (San Piero spread apart 7 by 13 feet and was laid out in randomized blocks with 3 replications. The results of this trial can be summarized as follows: a Trees pruned on August 1st gave the highest yield followed by those pruned on July 1st. While the

Development of epicormic sprouts in Sitka spruce following thinning and pruning in south-east Alaska.

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Robert L. Deal; R. James Barbour; Michael H. McClellan; Dean L. Parry

2003-01-01

The frequency and size of epicormic sprouts in Sitka spruce (Picea sitchensis (Bong.) Carr.) were assessed in five 23-29 year-old mixed Sitka spruce-western hemlock (Tsuga heterophylla (Raf.) Sarg.) stands that were uniformly thinned and pruned to 2.4, 3.7 and 5.2 m lift heights. Six to nine years after treatment sprouts were...

Prune belly anomaly on prenatal ultrasound as a presenting feature of ectrodactyly-ectodermal dysplasia-clefting syndrome (EEC).

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Janssens, S.; Defoort, P.; Vandenbroecke, C.; Scheffer, H.; Mortier, G.

2008-01-01

We report on a fetus with prune belly anomaly presenting at 16 weeks gestation. Clinical evaluation after birth revealed other malformations reminiscent of the EEC syndrome. This diagnosis was also suspected in the mother and finally confirmed in both relatives by identification of a heterozygous

Biofiltration of composting gases using different municipal solid waste-pruning residue composts: monitoring by using an electronic nose.

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López, R; Cabeza, I O; Giráldez, I; Díaz, M J

2011-09-01

The concentration of volatile organic compounds (VOCs) during the composting of kitchen waste and pruning residues, and the abatement of VOCs by different compost biofilters was studied. VOCs removal efficiencies greater than 90% were obtained using composts of municipal solid waste (MSW) or MSW-pruning residue as biofilter material. An electronic nose identified qualitative differences among the biofilter output gases at very low concentrations of VOCs. These differences were related to compost constituents, compost particle size (2-7 or 7-20mm), and a combination of both factors. The total concentration of VOCs determined by a photoionization analyser and inferred from electronic nose data sets were correlated over an ample range of concentrations of VOCs, showing that these techniques could be specially adapted for the monitoring of these processes. Copyright © 2011 Elsevier Ltd. All rights reserved.

Survival of FUngi Associated with Grapevine Decline in Pruned Wood after Composting

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P. Lecomte

2006-04-01

Full Text Available Recycling vine wood pruned in winter in the vineyard, after grinding and composting, might pose a risk of recontamination with fungi associated with grapevine decline. The survival of four ascomycete fungi (Botryosphaeria obtusa, Phaeomoniella chlamydospora, Phaeoacremonium aleophilum and Eutypa lata in composted material was investigated in a 3-year study conducted in the Bordeaux area. Naturally and artificially infested material was examined before and after composting using classical isolation procedures. Results clearly showed that a composting process can eradicate the four target fungi efficiently.

The C terminus of the polerovirus p5 readthrough domain limits virus infection to the phloem.

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Peter, Kari A; Gildow, Frederick; Palukaitis, Peter; Gray, Stewart M

2009-06-01

Poleroviruses are restricted to vascular phloem tissues from which they are transmitted by their aphid vectors and are not transmissible mechanically. Phloem limitation has been attributed to the absence of virus proteins either facilitating movement or counteracting plant defense. The polerovirus capsid is composed of two forms of coat protein, the major P3 protein and the minor P3/P5 protein, a translational readthrough of P3. P3/P5 is required for insect transmission and acts in trans to facilitate long-distance virus movement in phloem tissue. Specific potato leafroll virus mutants lacking part or all of the P5 domain moved into and infected nonvascular mesophyll tissue when the source-sink relationship of the plant (Solanum sarrachoides) was altered by pruning, with the progeny virus now being transmissible mechanically. However, in a period of months, a phloem-specific distribution of the virus was reestablished in the absence of aphid transmission. Virus from the new phloem-limited infection showed compensatory mutations that would be expected to restore the production of full-length P3/P5 as well as the loss of mechanical transmissibility. The data support our hypothesis that phloem limitation in poleroviruses presumably does not result from a deficiency in the repertoire of virus genes but rather results from P3/P5 accumulation under selection in the infected plant, with the colateral effect of facilitating transmission by phloem-feeding aphid vectors.

The C Terminus of the Polerovirus P5 Readthrough Domain Limits Virus Infection to the Phloem▿

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Peter, Kari A.; Gildow, Frederick; Palukaitis, Peter; Gray, Stewart M.

2009-01-01

Poleroviruses are restricted to vascular phloem tissues from which they are transmitted by their aphid vectors and are not transmissible mechanically. Phloem limitation has been attributed to the absence of virus proteins either facilitating movement or counteracting plant defense. The polerovirus capsid is composed of two forms of coat protein, the major P3 protein and the minor P3/P5 protein, a translational readthrough of P3. P3/P5 is required for insect transmission and acts in trans to facilitate long-distance virus movement in phloem tissue. Specific potato leafroll virus mutants lacking part or all of the P5 domain moved into and infected nonvascular mesophyll tissue when the source-sink relationship of the plant (Solanum sarrachoides) was altered by pruning, with the progeny virus now being transmissible mechanically. However, in a period of months, a phloem-specific distribution of the virus was reestablished in the absence of aphid transmission. Virus from the new phloem-limited infection showed compensatory mutations that would be expected to restore the production of full-length P3/P5 as well as the loss of mechanical transmissibility. The data support our hypothesis that phloem limitation in poleroviruses presumably does not result from a deficiency in the repertoire of virus genes but rather results from P3/P5 accumulation under selection in the infected plant, with the colateral effect of facilitating transmission by phloem-feeding aphid vectors. PMID:19297484

Megacystis-microcolon-intestinal hypoperistalsis syndrome associated with prune belly syndrome: a case report.

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Akhtar, Tanveer; Alladi, Anand; Siddappa, O S

2012-01-01

Megacystis Microcolon Intestinal Hypoperistalsis Syndrome is a quite rare congenital anomaly that presents with a functional obstruction of the gastrointestinal tract which is usually fatal. It is three to four times more prevalent in females. We present a case of a rare association of a male neonate with Megacystis Microcolon Intestinal Hypoperistalsis Syndrome who in addition had the classical triad of Prune Belly Syndrome and thus suggest a possibility of different spectrums with a common pathogenesis.

The prune belly syndrome in a female foetus with urorectal septum malformation sequence: a case report on a rare entity with an unusual association.

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Goswami, Dibyajyoti; Kusre, Giriraj; Dutta, Hemonta Kumar; Sarma, Adity

2013-08-01

The prune belly syndrome is a rare congenital anomaly which is characterized by the triad of an absent or a deficient development of the abdominal muscle, bilateral cryptorchidism and an anomalous urinary tract. In its full form, this condition occurs only in males. However, a similar condition occurs in females in the absence of cryptorchidism. On the other hand, the urorectal septum malformation sequence is a lethal congenital malformation which is characterized by the development of a phallus like structure, a smooth perineum and the absence of urethral, vaginal and anal openings. We are reporting a case of a female foetus with the prune belly syndrome, which was associated with a urorectal septum malformation sequence. A dead foetus with a protruded abdomen and ambiguous genitalia, was born at 32 weeks of pregnancy. On autopsy, it was found to have female internal genital organs. The left kidney, the urinary bladder and the rectum were absent. The sigmoid colon, the ureters and the fallopian tubes opened into a common cloacal sac. The histopathological examination of the ovary showed the presence of Leydig's cells. The occurrence of the female counterpart of the prune belly syndrome is extremely rare and only few of such cases were found to be discussed in the details in the indexed English literature so far. Hence, we hope that this case report will contribute to the existing knowledge on the prune belly syndrome.

Fenologia da goiabeira 'Paluma' sob diferentes sistemas de cultivos, épocas e intensidades de poda de frutificação Phenology of 'Paluma' guava trees under different cultivation systems, times and intensities of fruit pruning

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Luiz Augusto Lopes Serrano

2008-01-01

Full Text Available O trabalho teve como objetivo avaliar os efeitos de diferentes épocas e intensidades de poda de frutificação sobre a fenologia da goiabeira 'Paluma', em dois sistemas de cultivo, em Pedro Canário (ES. O delineamento experimental foi o de blocos ao acaso, em esquema de parcelas sub-subdivididas. As parcelas foram os sistemas de cultivo irrigado e sequeiro; as subparcelas foram as épocas de poda (10/11/2005, 9/12/2005, 13/1/2006 e 10/2/2006; e as sub-subparcelas foram as intensidades de poda (curta, média e longa. O ciclo da goiabeira 'Paluma', entre a poda até o início da colheita dos frutos, variou de 182 (poda em novembro e dezembro a 203 dias (poda em fevereiro. A queda fisiológica dos frutos ocorreu até os 56 dias após o final do florescimento. A irrigação e a poda longa proporcionaram maior brotação e estabelecimento dos ramos. As plantas submetidas à poda longa em fevereiro produziram maior número de frutos por ramo. Independentemente da época de poda, as plantas submetidas à poda curta apresentaram menor número de frutos por ramo e menor índice de pegamento de frutos. A irrigação e as podas realizadas em dezembro e janeiro favoreceram a produção de frutos maiores.The objective of this work was to evaluate the effects of different fruit pruning times and intensities on the phenology of 'Paluma' guava trees in two cultivation systems, in Pedro Canário, Espírito Santo State, Brazil. The experimental design was a randomized complete block in a split split plots scheme. The main plots were the cultivation systems (with and without irrigation, the split plots were the pruning times (November 10, 2005; December 9, 2005; January 13, 2006 and February 10, 2006, and the split split plots were the pruning intensities (heavy, medium and light. The period between pruning and the beginning of fruit ripening was between 182 (pruning in November and December to 203 days (pruning in February. Fruit physiologic fall continued for

Abdominoplasty in Prune Belly Syndrome.

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Dénes, F T; Park, R; Lopes, R I; Moscardi, P R M; Srougi, M

2015-10-01

Many patients with Prune Belly Syndrome (PBS) require abdominoplasty alone or in combination with correction of any urogenital abnormalities. This video presents a simplified technique with which to treat the abdominal flaccidity in PBS. A longitudinal xypho-pubic fusiform figure is drawn on the abdomen, based on the area of skin and subcutaneous tissue to be removed. This is performed with preservation of the musculo-fascial layer and the umbilicus. A lateral elliptical single xypho-pubic line is drawn in the most lax side of the fascia, which is incised along this line. After urinary tract reconstruction and orchidopexy, closure is initiated by suturing the medial edge of the wider fascial flap laterally to the peritoneal side of the contralateral flap. Next, the now outer fascial flap is laid over the inner flap, and a buttonhole is made to expose the umbilicus. The subcutaneous tissue of the inner flap is laterally undermined to gain extra distance for the suture of the outer flap over the inner flap. The subcutaneous tissue and skin are sutured in the midline, incorporating the umbilicus. In a 30-year period, 43 PBS patients underwent this procedure with good cosmetic and long-term functional results. This abdominoplasty technique is simple and presents good functional and cosmetic results in PBS patients. Copyright © 2015 Journal of Pediatric Urology Company. Published by Elsevier Ltd. All rights reserved.

Outcomes of renal replacement therapy in boys with prune belly syndrome: findings from the ESPN/ERA-EDTA Registry

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Yalcinkaya, Fatos; Bonthuis, Marjolein; Erdogan, Beyza Doganay; van Stralen, Karlijn J.; Baiko, Sergey; Chehade, Hassib; Maxwell, Heather; Montini, Giovanni; Rönnholm, Kai; Sørensen, Søren Schwartz; Ulinski, Tim; Verrina, Enrico; Weber, Stefanie; Harambat, Jérôme; Schaefer, Franz; Jager, Kitty J.; Groothoff, Jaap W.

2018-01-01

As outcome data for prune belly syndrome (PBS) complicated by end-stage renal disease are scarce, we analyzed characteristics and outcomes of children with PBS using the European Society for Pediatric Nephrology/European Renal Association-European Dialysis and Transplant Association (ESPN/ERA-EDTA)

Prune Belly Syndrome Associated with Full Spectrum of VACTERL in a New Born.

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Younous, Said; Zarrouki, Youssef; Boutbaoucht, Mustapha; Mouaffak, Youssef; El Idrissi, Kawtar Ennour; Aboussair, Nissrine; Saiad, Mohammed O

2012-01-01

Prune belly syndrome (PBS) is a rare congenital anomaly of uncertain etiology. Many associations of PBS with other malformations were previously reported, but only few cases of the association with VACTERL have been described. We report a rare case of a Moroccan new born with PBS and complete VACTERL association. The cause of this association is still unknown, but a common etiology is possible, especially when for the two syndromes, a defect in mesodermal differentiation, in early first trimester, has been suggested.

Prune-belly syndrome: an autopsy case report.

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Vasconcelos, Marcela Arruda Pereira Silva; de Lima, Patricia Picciarelli

2014-01-01

Prune-belly syndrome (PBS) is a rare congenital anomaly characterized by a spectrum of mild-to-severe presentations of urinary tract malformations, deficient abdominal wall musculature, and cryptorchidism in male newborns or genital abnormalities in the female newborns. Currently, antenatal diagnosis is feasible with ultrasound examination, and treatment is based on case report experience. More recently, intrauterine management has been undertaken with encouraging results. The authors report a case of PBS diagnosed at the seventeenth gestation week, when ultrasonographic examination revealed the presence of ascites, distended bladder, thickened bladder wall and posterior urethral valve. The fetus was submitted to an intrauterine intervention at the nineteenth gestational week. Delivery occurred at 34 weeks of gestation and the newborn examination was consistent with PBS. On the second day of life, the newborn was submitted to abdominoplasty, colostomy, and orchiopexy. However, the outcome was unfavorable with respiratory failure and death on the fifteenth day of life. The autopsy confirmed the diagnosis of PBS, but the immediate cause of death was attributed to aspiration pneumonia.

Prune-belly syndrome: an autopsy case report

Directory of Open Access Journals (Sweden)

Marcela Arruda Pereira Silva Vasconcelos

2014-12-01

Full Text Available Prune-belly syndrome (PBS is a rare congenital anomaly characterized by a spectrum of mild-to-severe presentations of urinary tract malformations, deficient abdominal wall musculature, and cryptorchidism in male newborns or genital abnormalities in the female newborns. Currently, antenatal diagnosis is feasible with ultrasound examination, and treatment is based on case report experience. More recently, intrauterine management has been undertaken with encouraging results. The authors report a case of PBS diagnosed at the seventeenth gestation week, when ultrasonographic examination revealed the presence of ascites, distended bladder, thickened bladder wall and posterior urethral valve. The fetus was submitted to an intrauterine intervention at the nineteenth gestational week. Delivery occurred at 34 weeks of gestation and the newborn examination was consistent with PBS. On the second day of life, the newborn was submitted to abdominoplasty, colostomy, and orchiopexy. However, the outcome was unfavorable with respiratory failure and death on the fifteenth day of life. The autopsy confirmed the diagnosis of PBS, but the immediate cause of death was attributed to aspiration pneumonia.

76 FR 21618 - Fresh Prunes Grown in Designated Counties in Washington and in Umatilla County, OR; Termination...

Science.gov (United States)

2011-04-18

... marketing order is no longer an effective marketing tool for the fresh prune industry, and that termination... operation of the marketing order. DATES: Effective Date: April 19, 2011. FOR FURTHER INFORMATION CONTACT....64 of Marketing Agreement and Order No. 924, both as amended (7 CFR part 924), effective under the...

Highly erodible terrain in agriculture land against chipped pruned branches. Or how to stop the soil erosion with low investment

Science.gov (United States)

Cerdà, A.

2009-04-01

The session on "Soil erosion and sediment control with vegetation and bioengineering on severely eroded terrain" pays special attention to the severe soil erosion suffered on steep slopes and erodible parent materials and soils. Within the last 20 years, in the Mediterranean lands, the citrus orchards were reallocated on steep slopes due to the urban development and better climatic and management conditions of the new plantations. The lack of vegetation cover on the new slope plantations of citrus resulted in high erosion rates. Those non-sustainable soil losses were measured by means of rainfall simulation experiments, Gerlach collectors, geomorphological transect and topographical measurements. The October 2007 and October 2008 rainy periods resulted in sheet, rill and gully erosion. Some recently planted orchards (2005) had the first pruning season in 2008. The pruned chipped branches reduced the soil losses to 50 % of the expected, although the litter (pruned branches) covered 4.67 % of the soil. This is why a research was developed by means of simulated rainfall experiments to determine the vegetation cover (litter, mainly leaves) to protect the soil to reach a sustainable erosion rate. Rainfall simulation experiments at 43 mm h-1 where performed on 1 m2 plots covered with 0, 3, 7, 15, 30, 45, 60, 80 and 100 % litter cover (pruned chipped branches) to determine the sustainable litter cover to avoid the soil losses. The results show that more that 45 % litter cover almost reduces the soil losses to negligible rates. The results confirm that 4 % of vegetation cover reduces the soil losses to 50 %. Key words: Agriculture land, erodible terrain, land management, citrus, erosion, Spain, Valencia, herbicides. Acknowledgements, We thanks the financial support of the Ministerio de Ciencia e Innovación by means of the project CGL2008-02879/BTE, "PERDIDA DE SUELO EN NUEVAS EXPLOTACIONES CITRICOLAS EN PENDIENTE. ESTRATEGIAS PARA EL CONTROL DE LA EROSION HIDRICA"

Severity of scab and its effects on fruit weight in mechanically hedge-pruned and topped pecan trees

Science.gov (United States)

Scab is the most damaging disease of pecan in the southeastern USA. Pecan trees can attain 44 m in height, so managing disease in the upper canopy is a problem. Fungicide is ordinarily applied using ground-based air-blast sprayers. Although mechanical hedge-pruning and topping of pecan is done for s...

75 FR 43039 - Fresh Prunes Grown in Designated Counties in Washington and in Umatilla County, OR; Suspension of...

Science.gov (United States)

2010-07-23

... marketing of fresh prunes over the past four years. Based on its analysis, the Committee has determined that... DEPARTMENT OF AGRICULTURE Agricultural Marketing Service 7 CFR Part 924 [Doc. No. AMS-FV-10-0054...; Suspension of Reporting and Assessment Requirements AGENCY: Agricultural Marketing Service, USDA. ACTION...

Associated rare anomalies in prune belly syndrome: A case report

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Andreas Fette

2015-02-01

Full Text Available The triad of deficient abdominal wall musculature, undescended testes and urinary tract anomalies characterizes the Prune Belly Syndrome (PBS. PBS can be associated with other comorbid urological and non urological conditions. But the full pathogenesis and best treatment is still a matter of debate. A term newborn with a classical PBS (Woodhouse Group 2, Smith and Woodard Group 2 plus lung hypoplasia and funnel chest deformity, a megapenis with a tight phimosis and an obturated anterior urethra is presented. Unfortunately, the baby died in urosepsis and renal failure in his 3rd week of life, despite urine drainage surgery and peritoneal dialysis undertaken. According to the best of our knowledge, this is an unique combination of rare anomalies in PBS patients.

Cavity size and copper root pruning affect production and establishment of container-grown longleaf pine seedlings

Science.gov (United States)

Marry Anne Sword Sayer; James D. Haywood; Shi-Jean Susana Sung

2009-01-01

With six container types, we tested the effects of cavity size (i.e., 60, 93, and 170 ml) and copper root pruning on the root system development of longleaf pine (Pinus palustris Mill.) seedlings grown in a greenhouse. We then evaluated root egress during a root growth potential test and assessed seedling morphology and root system development 1 year after planting in...

Congenital mydriasis and prune belly syndrome in a child with an ACTA2 mutation.

Science.gov (United States)

Brodsky, Michael C; Turan, Kadriye Erkan; Khanna, Cheryl L; Patton, Alice; Kirmani, Salman

2014-08-01

We report the association of congenital mydriasis with prune belly syndrome and cerebrovascular anomalies in a 9-year-old boy who was found to have an ACTA2 mutation. This case illustrates the spectrum of systemic malformations that are attributable to mutations in ACTA2 and expands the spectrum of cerebrovascular anomalies that are now known to accompany congenital mydriasis. Copyright © 2014 American Association for Pediatric Ophthalmology and Strabismus. Published by Elsevier Inc. All rights reserved.

Pruning cycles and nitrogen fertilization of coffee fields conducted in the “safra zero” system

OpenAIRE

Japiassú, Leonardo Bíscaro; Fundação Procafé; Garcia, André Luiz Alvarenga; Fundação Procafé; Guimarães, Rubens José; Universidade Federal de Lavras - UFLA; Padilha, Lílian; Embrapa Café; Carvalho, Carlos Henrique Siqueira; Embrapa Café

2010-01-01

Modern, competitive and cost effective coffee production requires plants with high productivity that are more adapted to mechanical and manual harvesting. “Safra Zero” is a cultivation system designed to limit plant height and eliminate the need for expensive harvesting during years of low productivity, which usually follow years of high productivity. This system is based on pruning cycles, nitrogen fertilization and different management methods. To evaluate the “Safra Zero&...

Effects of tree species and wood particle size on the properties of cement-bonded particleboard manufacturing from tree prunings.

Science.gov (United States)

Nasser, Ramadan A; Al-Mefarrej, H A; Abdel-Aal, M A; Alshahrani, T S

2014-09-01

This study investigated the possibility of using the prunings of six locally grown tree species in Saudi Arabia for cement-bonded particleboard (CBP) production. Panels were made using four different wood particle sizes and a constant wood/cement ratio (1/3 by weight) and target density (1200 kg/m3). The mechanical properties and dimensional stability of the produced panels were determined. The interfacial area and distribution of the wood particles in cement matrix were also investigated by scanning electron microscopy. The results revealed that the panels produced from these pruning materials at a target density of 1200 kg m(-3) meet the strength and dimensional stability requirements of the commercial CBP panels. The mean moduli of rupture and elasticity (MOR and MOE) ranged from 9.68 to 11.78 N mm2 and from 3952 to 5667 N mm2, respectively. The mean percent water absorption for twenty four hours (WA24) ranged from 12.93% to 23.39%. Thickness swelling values ranged from 0.62% to 1.53%. For CBP panels with high mechanical properties and good dimensional stability, mixed-size or coarse particles should be used. Using the tree prunings for CBPs production may help to solve the problem of getting rid of these residues by reducing their negative effects on environment, which are caused by poor disposal of such materials through direct combustion process and appearance of black cloud and then the impact on human health or the random accumulation and its indirect effects on the environment.

Combustion behaviour of Olive pruning/animal manure blends in a fluidized bed combustor

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Despina Vamvuka

2017-09-01

Both fuels burned mostly within the bed. The maximum temperature of animal manure was 50 °C lower than that of olive pruning, however efficiency was nearly 99%. CO emissions were low, SO2 emissions were negligible, whereas NOx emissions of blends exceeded legislation limits, when excess air ratio was over 1.4. Decreasing excess air from 50 to 30%, or reducing reactor loading, resulted in improved burnout. The optimum performance for the blends was achieved when the feed rate was 0.6 kg/h and excess air was 30%.

Variability and molecular typing of the woody-tree infecting prunus necrotic ringspot ilarvirus.

Science.gov (United States)

Vasková, D; Petrzik, K; Karesová, R

2000-01-01

The 3'-part of the movement protein gene, the intergenic region and the complete coat protein gene of sixteen isolates of Prunus necrotic ringspot virus (PNRSV) from five different host species from the Czech Republic were sequenced in order to search for the bases of extensive variability of viroses caused by this pathogen. According to phylogenetic analyses all the 46 isolates sequenced to date split into three main groups, which correlated to a certain extend with their geographic origin. Modelled serological properties showed that all the new isolates belong to one serotype.

A influência da poda mecânica na produção e na eficiência da colheita da azeitona por vibração The influence of mechanical pruning on olive production and shaker efficiency

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A. B. Dias

2007-01-01

Full Text Available Em Portugal tem-se verificado um incremento no custo de execução da poda da oliveira, pelo que os autores iniciaram em 1997 a avaliação da aplicação da poda mecânica como alternativa à poda manual efectuada com moto - serra. Estabeleceram-se ensaios de campo com os seguintes tratamentos: T1 – poda manual com moto-serra; T2 – poda mecânica, efectuada por uma máquina de podar de discos, montada no carregador frontal de um tractor agrícola; T3 – poda mecânica efectuada pela máquina de podar de discos, seguida de complemento manual com moto - serra. Em cada ensaio, efectuou-se a colheita da azeitona com vibradores de tronco multidireccionais, tendo-se avaliado a produção total por árvore e o desempenho do vibrador na colheita da azeitona, em termos de eficiência de colheita e tempo de vibração por árvore. Neste trabalho apresentam-se os resultados obtidos em dois ensaios, não se tendo verificado diferenças significativas (P>0,1 entre os tratamentos na produção de azeitona, nos quatro anos após a execução da poda. Relativamente ao desempenho do vibrador, os resultados obtidos mostram que há necessidade de adequar a forma de abordar a árvore e a duração da vibração, de modo a manter o mesmo grau de eficiência entre os tratamentos.In Portugal, olive farmers, particularly those with orchards of around 100 trees per hectare, are facing increasing pruning costs every year. As a result they tend to lengthen pruning intervals. With the purpose of studying a mechanised alternative to the labour intensive manual pruning practice, the authors established in 1997 field trials with the following three treatments: T1 -manual pruning cutting with a chain saw; T2 - mechanical pruning, performed by a tractor mounted cutting bar provided with 6 circular disc-saws; T3 -mechanical pruning, as in T2, followed by a manual pruning complement. In each test site, olives were harvested using a trunk shaker. Total production per tree

Fuzzy Pruning Based LS-SVM Modeling Development for a Fermentation Process

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Weili Xiong

2014-01-01

Full Text Available Due to the complexity and uncertainty of microbial fermentation processes, data coming from the plants often contain some outliers. However, these data may be treated as the normal support vectors, which always deteriorate the performance of soft sensor modeling. Since the outliers also contaminate the correlation structure of the least square support vector machine (LS-SVM, the fuzzy pruning method is provided to deal with the problem. Furthermore, by assigning different fuzzy membership scores to data samples, the sensitivity of the model to the outliers can be reduced greatly. The effectiveness and efficiency of the proposed approach are demonstrated through two numerical examples as well as a simulator case of penicillin fermentation process.

Enzymatic hydrolyses of pretreated eucalyptus residues, wheat straw or olive tree pruning, and their mixtures towards flexible sugar-based biorefineries

DEFF Research Database (Denmark)

Silva-Fernandes, Talita; Marques, Susana; Rodrigues, Rita C. L. B.

2016-01-01

Eucalyptus residues, wheat straw, and olive tree pruning are lignocellulosic materials largely available in Southern Europe and have high potential to be used solely or in mixtures in sugar-based biorefineries for the production of biofuels and other bio-based products. Enzymatic hydrolysis...

Biomass production and essential oil yield from leaves, fine stems and resprouts using pruning the crown of Aniba canelilla (H.B.K.) (Lauraceae) in the Central Amazon

OpenAIRE

Manhães,Adriana Pellegrini; Veiga-Júnior,Valdir Florêncio da; Wiedemann,Larissa Silveira Moreira; Fernandes,Karenn Silveira; Sampaio,Paulo de Tarso Barbosa

2012-01-01

Aniba canelilla (H.B.K.) Mez. is a tree species from Amazon that produces essential oil. The oil extraction from its leaves and stems can be an alternative way to avoid the tree cutting for production of essential oil. The aim of this study was to analyse factors that may influence the essential oil production and the biomass of resprouts after pruning the leaves and stems of A. canelilla trees. The tree crowns were pruned in the wet season and after nine months the leaves and stems of the re...

A case of ultrasound-guided prenatal diagnosis of prune belly syndrome in Papua New Guinea--implications for management.

Science.gov (United States)

Ome, Maria; Wangnapi, Regina; Hamura, Nancy; Umbers, Alexandra J; Siba, Peter; Laman, Moses; Bolnga, John; Rogerson, Sheryle; Unger, Holger W

2013-05-07

Prune belly syndrome is a rare congenital malformation of unknown aetiology and is characterised by abnormalities of the urinary tract, a deficiency of abdominal musculature and bilateral cryptorchidism in males. We report a case of prune belly syndrome from Papua New Guinea, which was suspected on pregnancy ultrasound scan and confirmed upon delivery. A 26-year-old married woman, Gravida 3 Para 2, presented to antenatal clinic in Madang, Papua New Guinea, at 21(+5) weeks' gestation by dates. She was well with no past medical or family history of note. She gave consent to participate in a clinical trial on prevention of malaria in pregnancy and underwent repeated ultrasound examinations which revealed a live fetus with persistent megacystis and anhydramnios. Both mother and clinicians agreed on conservative management of the congenital abnormality. The mother spontaneously delivered a male fetus weighing 2010 grams at 34 weeks' gestation with grossly abnormal genitalia including cryptorchidism, penile aplasia and an absent urethral meatus, absent abdominal muscles and hypoplastic lungs. The infant passed away two hours after delivery. This report discusses the implications of prenatal detection of severe congenital abnormalities in PNG. This first, formally reported, case of prune belly syndrome from a resource-limited setting in the Oceania region highlights the importance of identifying and documenting congenital abnormalities. Women undergoing antenatal ultrasound examinations must be carefully counseled on the purpose and the limitations of the scan. The increasing use of obstetric ultrasound in PNG will inevitably result in a rise in prenatal detection of congenital abnormalities. This will need to be met with adequate training, referral mechanisms and better knowledge of women's attitudes and beliefs on birth defects and ultrasound. National medicolegal guidance regarding induced abortion and resuscitation of a fetus with severe congenital abnormalities may

The use of pruned chipped branches to increase the soil infiltration capacity and reduce the soil losses on citrus orchards in Eastern Spain

Science.gov (United States)

González-Pelayo, Óscar; Llovet, Joan; Giménez-Morera, Antonio; Jordán, Antonio; Pereira, Paulo; Novara, Agata; García-Orenes, Fuensanta; Cerdà, Artemi

2015-04-01

Soil water erosion is causing problems on the agriculture land of the world. The high erosion rates registered in the agriculture land are due to the lack of a vegetation cover that protects the soil. High erosion rates in agriculture lands are found in Africa, Europe, Asia, and any other continent. Soil erosion on citrus orchards has been researched recently and shown huge erosion rates in the Mediterranean and in China. All this research findings allow us to confirm that the soil erosion rates on citrus orchards are not sustainable and strategies to control the soil erosion should be applied. The increasing erosion rates are due to the bare soils, but also are due to the soil structure degradation and soil organic matter exhaustion. Some authors applied cover on crops to avoid the raindrop impact and the surfaces wash but there is a need to develop new strategies to reduce soil losses and keep sustainable the citrus productions. The agriculture production also results in a large amount of residues than can be a resource to improve the soil cover. This has been done in road embankments, in forest land affected by wildfires and on afforestation. As a consequence of the mechanization of the agriculture, and the reduction of the draft animals (mainly horses, mules, donkeys and oxen), the straw and the pruned branches are being a residue instead of a resource in many developed countries. Straw was used as a forage and the pruned branches as a source of heat and energy but both can be used as a mulch to control the soil erosion. The pruned branches can contribute with a valuable source of nutrients and a good soil protection. The leaves of the trees, and some parts of the plants, once harvest can contribute to reduce the soil losses. Our goal is to test if a residue such as the chipped pruned branches can be transformed as a resource that will help to control the soil erosion rates. Straw has been seen as a very efficient to reduce the water losses in agriculture land

The Prune Belly syndrome: urological aspects and long-term outcomes of a rare disease

Directory of Open Access Journals (Sweden)

Vahudin Zugor

2012-06-01

Full Text Available Prune-Belly syndrome is a disorder characterized by the following triad of symptoms: deficiency of the abdominal muscles, malformations of the urinary tract and bilateral cryptorchidism. This study included a total of 16 patients. The findings included clinical characteristics, diagnostics, therapy and long-term clinical outcomes. All patients were asked to complete a questionnaire and, in some cases, were given further examination. All patients were diagnosed with congenital aplasia of the abdominal wall and a variety of urogenital malformations. Cryptorchidism was present in 11 patients (68.8%, malformations of the prostate in 3 (18.8%, urethral malformations in 8 (50% and mega-ureter in 14 patients (87.5%. A mega-bladder was observed in 13 patients (81.3%. Distinctive renal malformations, such as renal dysplasia, in 3 patients (18.8% and hydronephrosis in 9 patients (56.3%, respectively. Abdominoplasty was performed on 4 patients (25%. Urethral surgery was performed in 10 patients (62.5%. Seven patients (43.8% required ureter surgery, most of which involved re-implantation of the ureter and, in some cases, additional ureter modeling. Renal surgery was performed on 5 patients. Four patients with non-functioning kidneys with hydronephrosis underwent a nephrectomy and one patient pyeloplasty. We demonstrate that successful treatment is possible even in cases of serious and complex malformations, such as those of the Prune-Belly syndrome. Treatment must be tailored to the individual patient. The severity of the renal dysplasia is the main prognostic factor.

The Prune Belly syndrome: urological aspects and long-term outcomes of a rare disease.

Science.gov (United States)

Zugor, Vahudin; Schott, Günter E; Labanaris, Apostolos P

2012-04-02

Prune-Belly syndrome is a disorder characterized by the following triad of symptoms: deficiency of the abdominal muscles, malformations of the urinary tract and bilateral cryptorchidism. This study included a total of 16 patients. The findings included clinical characteristics, diagnostics, therapy and long-term clinical outcomes. All patients were asked to complete a questionnaire and, in some cases, were given further examination. All patients were diagnosed with congenital aplasia of the abdominal wall and a variety of urogenital malformations. Cryptorchidism was present in 11 patients (68.8%), malformations of the prostate in 3 (18.8%), urethral malformations in 8 (50%) and mega-ureter in 14 patients (87.5%). A mega-bladder was observed in 13 patients (81.3%). Distinctive renal malformations, such as renal dysplasia, in 3 patients (18.8%) and hydronephrosis in 9 patients (56.3%), respectively. Abdominoplasty was performed on 4 patients (25%). Urethral surgery was performed in 10 patients (62.5%). Seven patients (43.8%) required ureter surgery, most of which involved re-implantation of the ureter and, in some cases, additional ureter modeling. Renal surgery was performed on 5 patients. Four patients with non-functioning kidneys with hydronephrosis underwent a nephrectomy and one patient pyeloplasty. We demonstrate that successful treatment is possible even in cases of serious and complex malformations, such as those of the Prune-Belly syndrome. Treatment must be tailored to the individual patient. The severity of the renal dysplasia is the main prognostic factor.

Caracterização fenológica da goiabeira 'Pedro Sato' sob diferentes épocas de poda 'Pedro Sato' guava tree phenological characterization in different pruning times

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Ronaldo Hissayuki Hojo

2007-04-01

Full Text Available O cultivo da goiabeira na região de Lavras-MG, vem tendo grande importância, porém não há uma oferta freqüente durante o ano, concentrando muitas vezes a produção em um único período. A prática de podas escalonadas é fundamental para auxiliar o produtor a colher frutos em praticamente todos os meses do ano. Visando a esse escalonamento, objetivou-se a caracterização fenológica da goiabeira 'Pedro Sato', em quatro épocas de poda (setembro, e dezembro de 2003, março e junho de 2004. Foram utilizadas dez plantas, com quatro anos de idade, para cada época de poda. O delineamento foi de blocos casualizados, onde em cada planta foram marcados doze ramos, avaliando-se semanalmente os dados sobre os estádios fenológicos. Com as mensurações, foi possível estabelecer a indicação das diferentes fenofases da cultura, sendo a duração entre a poda e o início da brotação de 30,8 a 39,2 dias; poda ao florescimento de 68,6 a 133 dias; da abertura da flor (floração plena à maturação do fruto de 118,3 a 148,4 dias; e o ciclo poda à colheita foi em média de 214,2, 211,4, 247,8 e 237,3 dias para as podas realizadas em setembro, dezembro, março e junho.Although the guava tree cultivation in the area of Lavras, MG, has had great importance, there is not a frequent offer during the year, concentrating the production in an only period. The practice of staggered prunings is fundamental to aid the producer to pick fruits in practically every month of the year. Seeking that stagger, it was aimed the 'Pedro Sato' guava tree phenological characterization in four pruning times (September and December of 2003, March and June of 2004. Ten four-year-old plants were used for each pruning time in randomized block design, where, in each plant, twelve branches were marked and the data were evaluated weekly on the phenological stages. It was possible to establish the indication of the different phenophases of the culture with the measuring, being

Prune belly syndrome with urethral hypoplasia and vesico-cutaneous fistula: A case report and review of literature.

Science.gov (United States)

Sarhan, Osama M; Al-Ghanbar, Mustafa S; Nakshabandi, Ziad M

2013-10-01

Association between Prune belly syndrome (PBS) and urethral hypoplasia is an unusual condition. It is usually fatal unless there is a communication between the fetal bladder and the amniotic sac. We report a case of PBS with urethral hypoplasia and congenital vesico-cutaneous fistula in a male neonate. Patient underwent cutaneous vesicostomy and was discharged for close follow up of his renal function and for future reconstruction.

Megacystis-microlon-intestinal hypoperistalsis syndrome in a newborn girl whose brother had Prune Belly syndrome: Common Pathogenesis

Energy Technology Data Exchange (ETDEWEB)

Oliveira, G.; Boechat, M.I.; Fereira, M.A.

1983-07-01

A case of Megacystis-Microcolon-Intestinal Hypoperistalsis Syndrome (MMIHS) is presented. There were important findings: a urachal remnant and a brother with Prune Belly Syndrome (PBS). After a review of the literature, many common characteristics of MMIHS and PBS are described: flaccid abdomen, dilatation of the urinary tract, intestinal malrotation, cryptorchidism, urachal remnants and familial incidence. MMIHS and PBS may be manifestations of the same underlying process.

A case of ultrasound-guided prenatal diagnosis of prune belly syndrome in Papua New Guinea – implications for management

Science.gov (United States)

2013-01-01

Background Prune belly syndrome is a rare congenital malformation of unknown aetiology and is characterised by abnormalities of the urinary tract, a deficiency of abdominal musculature and bilateral cryptorchidism in males. We report a case of prune belly syndrome from Papua New Guinea, which was suspected on pregnancy ultrasound scan and confirmed upon delivery. Case presentation A 26-year-old married woman, Gravida 3 Para 2, presented to antenatal clinic in Madang, Papua New Guinea, at 21+5 weeks’ gestation by dates. She was well with no past medical or family history of note. She gave consent to participate in a clinical trial on prevention of malaria in pregnancy and underwent repeated ultrasound examinations which revealed a live fetus with persistent megacystis and anhydramnios. Both mother and clinicians agreed on conservative management of the congenital abnormality. The mother spontaneously delivered a male fetus weighing 2010 grams at 34 weeks’ gestation with grossly abnormal genitalia including cryptorchidism, penile aplasia and an absent urethral meatus, absent abdominal muscles and hypoplastic lungs. The infant passed away two hours after delivery. This report discusses the implications of prenatal detection of severe congenital abnormalities in PNG. Conclusion This first, formally reported, case of prune belly syndrome from a resource-limited setting in the Oceania region highlights the importance of identifying and documenting congenital abnormalities. Women undergoing antenatal ultrasound examinations must be carefully counseled on the purpose and the limitations of the scan. The increasing use of obstetric ultrasound in PNG will inevitably result in a rise in prenatal detection of congenital abnormalities. This will need to be met with adequate training, referral mechanisms and better knowledge of women’s attitudes and beliefs on birth defects and ultrasound. National medicolegal guidance regarding induced abortion and resuscitation of a

Megacystis-microlon-intestinal hypoperistalsis syndrome in a newborn girl whose brother had Prune Belly syndrome: Common Pathogenesis

International Nuclear Information System (INIS)

Oliveira, G.; Boechat, M.I.; Fereira, M.A.

1983-01-01

A case of Megacystis-Microcolon-Intestinal Hypoperistalsis Syndrome (MMIHS) is presented. There were important findings: a urachal remnant and a brother with Prune Belly Syndrome (PBS). After a review of the literature, many common characteristics of MMIHS and PBS are described: flaccid abdomen, dilatation of the urinary tract, intestinal malrotation, cryptorchidism, urachal remnants and familial incidence. MMIHS and PBS may be manifestations of the same underlying process. (orig.)

Prune belly syndrome with urethral hypoplasia and vesico-cutaneous fistula: A case report and review of literature

Directory of Open Access Journals (Sweden)

Osama M Sarhan

2013-01-01

Full Text Available Association between Prune belly syndrome (PBS and urethral hypoplasia is an unusual condition. It is usually fatal unless there is a communication between the fetal bladder and the amniotic sac. We report a case of PBS with urethral hypoplasia and congenital vesico-cutaneous fistula in a male neonate. Patient underwent cutaneous vesicostomy and was discharged for close follow up of his renal function and for future reconstruction.

On-line identification of hybrid systems using an adaptive growing and pruning RBF neural network

DEFF Research Database (Denmark)

Alizadeh, Tohid

2008-01-01

This paper introduces an adaptive growing and pruning radial basis function (GAP-RBF) neural network for on-line identification of hybrid systems. The main idea is to identify a global nonlinear model that can predict the continuous outputs of hybrid systems. In the proposed approach, GAP......-RBF neural network uses a modified unscented kalman filter (UKF) with forgetting factor scheme as the required on-line learning algorithm. The effectiveness of the resulting identification approach is tested and evaluated on a simulated benchmark hybrid system....

Poda e sistemas de condução na produção de figos verdes Pruning and conduction system in the yield of green fig

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Carlos Antonio Alvarenga Gonçalves

2006-06-01

Full Text Available O objetivo deste trabalho foi verificar o efeito da época de poda e de sistemas de condução sobre crescimento, produção e qualidade de frutos da figueira cultivada na região norte mineira, sob irrigação. O delineamento utilizado foi em blocos ao acaso, com quatro repetições, e os tratamentos arranjados em esquema fatorial 4x2, tomando por fatores épocas de poda (junho, setembro, dezembro e março e sistemas de condução (com desponte e sem desponte. Em cada parcela, constituída de três plantas úteis, foram coletados dados nos ciclos de produção 2000/2001 e 2001/2002. Não houve interação entre os fatores época de poda e sistema de condução. Houve diferenças de produção entre épocas de poda; plantas podadas em março e junho apresentaram maiores produções. Não houve diferença de produção entre os dois sistemas de condução. Diferentes épocas de poda e sistemas de condução não influíram na qualidade dos frutos em relação a teores de sólidos solúveis totais, pH, acidez total titulável, açúcares totais, glucose, sacarose e amido. A poda da figueira em diferentes épocas do ano pode propiciar produção na entressafra da cultura no norte de Minas Gerais, sem alterar a qualidade dos frutos verdes com padrão para a indústria.The objective of the work was to verify the effect of pruning time and conduction system on growth, yield, and quality of the fig tree fruit grown in the northern Minas Gerais region, under irrigation. The design utilized was randomized blocks with four replicates, and the treatments arranged in a 4x2 factorial scheme, taking as factors pruning times (June, September, December and March and conduction system (with lopping and without lopping. In each plot, made up of three useful plants, data concerning the cropping cycles of 2000/2001 and 2001/2002 were collected. No interaction between the factors pruning time and conduction system was verified. There were yield differences between

Apex pruning in pumpkin for fruit and seed production=Poda apical para produção de frutos e sementes de abóbora

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Marina Toledo Rodrigues Claudio

2014-08-01

Full Text Available The tip pruning stimulates the emission of lateral shoots, thus can produce higher number of flowers, fruits and seeds. This work aimed to evaluate the effect of apex pruning on fruit and seed production in pumpkin. The treatments consisted of plants without pruning, with pruning in the sixth, eighth and tenth node of main stem. The experimental design was a randomized block, with six replications. It was studied a line of pumpkin of the Germplasm Bank of the Universidade Estadual Paulista/Faculdade de Ciências Agronômicas. The characteristics evaluated were: number of branches per plant and fruit position in branches of the plant production (number and weight of fruits per plant, fruit yield, fruit average weight, fruit length and diameter, seed weight per fruit, seed yield and quality (germination test, first count, thousand seed weight, emergence, speed of emergence and accelerated aging. There was a significant difference only for number of secondary branches per plant and thousand seed weight, with larger values for plants that have not been pruned. It was obtained high average of germination (94% and good fruit (16.9 t ha-1 and seed (148 kg ha-1 yield. The apex pruning does not influence the production of fruits and seeds, as well as the physiological seed quality in pumpkin =A poda apical estimula a emissão de brotos laterais, com isso pode haver maior formação de flores e frutos e, consequentemente, maior número de sementes. Diante disso, objetivou-se avaliar o efeito da poda da haste principal para a produção de frutos e sementes de abóbora. Os tratamentos foram constituídos de plantas sem poda, com poda no sexto, oitavo e décimo nó da haste principal. O delineamento experimental foi em blocos casualizados, com seis repetições. Foi utilizada a linhagem de abóbora do tipo braquítica do Banco de Germoplasma da Universidade Estadual Paulista/Faculdade de Ciências Agronômicas. Foram avaliadas as seguintes caracter

O pessegueiro no sistema de pomar compacto: III. Épocas de poda drástica na diferenciação floral The peach meadow orchards: III. Time of drastic pruning on floral differentiation

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Wilson Barbosa

1990-01-01

Full Text Available Pesquisou-se, na região de Jundiaí, SP (23°8'S, a influência das épocas de poda drástica na diferenciação floral dos pessegueiros Tropical' e 'Aurora-2', conduzidos em alta densidade de plantio (1.667 plantas por hectare. Realizaram-se tais podas em 30 de setembro, 30 de outubro e 30 de novembro de 1986. Coletaram-se as gemas para análise mensalmente, a partir do 30° dia da poda: constatou-se, através de cortes histológicos das gemas, que a poda drástica precoce, de 30 de setembro, não prejudicou a diferenciação floral dos pessegueiros, que se iniciou em fevereiro, a cerca de cinco meses da decepa; em abril, a maioria das gemas de flancos encontrava-se com as sépalas, as pétalas, os estames e o pistilo completamente formados. As demais épocas de poda interferiram no processo de diferenciação floral, reduzindo o número de botões florais e, conseqüentemente, a densidade florífera das plantas. Nos pessegueiros conduzidos com poda normal, a organogênese floral, processada no início do verão (dezembro-janeiro, persistiu até o outono (abril.This paper reports the effect of three different dates of severe pruning on floral differentiation of peach trees of the cultivars Tropical and Aurora-2, conducted on a meadow orchards system. The peach trees were pruned in 1986, at the 30th day of September, October and November. The experimental plots were located at the Experiment Station of Jundiaí, (23º08'S, Instituto Agronômico de Campinas, State of São Paulo, Brazil. The lateral buds of the peach tree branches were first collected for analysis at the 30th day after pruning and on a monthly basis afterwards. Through histological studies made on longitudinal sections of the buds, it was observed that the severe pruning of September 30th, did not change the peach tree reproductive development The floral differentiation began in February, i. e., five months after pruning and produced sequentially: the petals, sepals, stamens and

[Prune-Belly Syndrome: a case report].

Science.gov (United States)

Tattoli, Fabio; De Prisco, Ornella; Gherzi, Maurizio; Falconi, Daniela; Marazzi, Federico; Marengo, Marita; Serra, Ilaria; Tamagnone, Michela; Formica, Marco

2014-01-01

Prune-Belly Syndrome (PBS) is a rare congenital syndrome characterized by the absence of abdominal muscles, anomalies in the urinary tract, megaureter, cryptorchidism or testicular agenesis, hypertension and worsening chronic kidney disease (CKD). The incidence is estimated between 1 out of 35,000 and 1 out of 50,000 born alive, and it affects males in prevalence (97%). In the present study we describe the case of a 38 year old male patient (followed since May 2011) affected by PBS, CKD, one functional kidney at the scintigraphy, pediatric testicular implants, bladder surgery and correction of pectus excavatum. At the beginning of the observation, renal function was deteriorated, with a creatinine 3.3 mg/dl, GFR calculated at MDRD 23 ml/min, proteinuria in nephrotic range (4 g/day), high blood pressure, anemia and hyperparathyroidism. In the following examinations renal function framework worsened, despite the adoption of a low-protein diet. Due to the functional trend, the patient was prescribed hemodialysis as substitute treatment. In January 2013 a first attempt of artero-venous fistula (AVF) did not succeed, while a new AVF in March 2013 resulted effective. In July hemodialysis was started. In the future, we expect to insert the patient in the Kidney Transplant List (since surgical feasibility has already been positively evaluated). Our case is quite peculiar due to the late beginning of substitute treatment. Further, SPB represents a challenge that, in the absence of a prompt and effective treatment, inevitably it leads to terminal uremia; nevertheless, given a proper treatment, a transplant with good chances of success can be envisaged.

Multi-pruning of decision trees for knowledge representation and classification

KAUST Repository

Azad, Mohammad

2016-06-09

We consider two important questions related to decision trees: first how to construct a decision tree with reasonable number of nodes and reasonable number of misclassification, and second how to improve the prediction accuracy of decision trees when they are used as classifiers. We have created a dynamic programming based approach for bi-criteria optimization of decision trees relative to the number of nodes and the number of misclassification. This approach allows us to construct the set of all Pareto optimal points and to derive, for each such point, decision trees with parameters corresponding to that point. Experiments on datasets from UCI ML Repository show that, very often, we can find a suitable Pareto optimal point and derive a decision tree with small number of nodes at the expense of small increment in number of misclassification. Based on the created approach we have proposed a multi-pruning procedure which constructs decision trees that, as classifiers, often outperform decision trees constructed by CART. © 2015 IEEE.

Multi-pruning of decision trees for knowledge representation and classification

KAUST Repository

Azad, Mohammad; Chikalov, Igor; Hussain, Shahid; Moshkov, Mikhail

2016-01-01

We consider two important questions related to decision trees: first how to construct a decision tree with reasonable number of nodes and reasonable number of misclassification, and second how to improve the prediction accuracy of decision trees when they are used as classifiers. We have created a dynamic programming based approach for bi-criteria optimization of decision trees relative to the number of nodes and the number of misclassification. This approach allows us to construct the set of all Pareto optimal points and to derive, for each such point, decision trees with parameters corresponding to that point. Experiments on datasets from UCI ML Repository show that, very often, we can find a suitable Pareto optimal point and derive a decision tree with small number of nodes at the expense of small increment in number of misclassification. Based on the created approach we have proposed a multi-pruning procedure which constructs decision trees that, as classifiers, often outperform decision trees constructed by CART. © 2015 IEEE.

R179H mutation in ACTA2 expanding the phenotype to include prune-belly sequence and skin manifestations.

Science.gov (United States)

Richer, J; Milewicz, D M; Gow, R; de Nanassy, J; Maharajh, G; Miller, E; Oppenheimer, L; Weiler, G; O'Connor, M

2012-03-01

Mutations in ACTA2 (smooth muscle cell-specific isoform of α-actin) lead to a predisposition to thoracic aortic aneurysms and other vascular diseases. More recently, the ACTA2 R179H mutation has been described in individuals with global smooth muscle dysfunction. We report a patient heterozygous for the mutation in ACTA2 R179H who presented with megacystis at 13 weeks gestational age and, at birth, with prune-belly sequence. He also had deep skin dimples and creases on his palms and soles, a finding not previously described but possibly related to ACTA2. To our knowledge, this is the first report of the R179H mutation in ACTA2 in a child with prune-belly sequence. We think the R179H mutation in ACTA2 should be included in the differential diagnosis of individuals presenting with the sequence without an identified mechanical obstruction. Furthermore, as ACTA2 R179H has been reported in patients with severe vasculomyopathy and premature death, we recommend that molecular testing for this mutation be considered in fetuses presenting with fetal megacystis with a normal karyotype, particularly if the bladder diameter is 15 mm or more, to allow expectant parents to make an informed decision. Copyright © 2012 Wiley Periodicals, Inc.

Repair of pectus excavatum in a toddler with Prune Belly syndrome and left bronchus compression

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Shawn T. Liechty

2017-01-01

Full Text Available A 2-year-old boy with prune-belly syndrome and severe pectus excavatum experienced recurrent pulmonary infections. A CT scan of the chest demonstrated compression of the left mainstem bronchus and leftward shift of the heart. The bronchial compression resulted in left upper lobe collapse and left lower lobe air-trapping requiring two hospitalizations for respiratory distress and pneumonia. The child underwent minimally invasive repair of his pectus excavatum and has not experienced any further pulmonary events. The pectus bar was removed 3 years post-operatively and at seven years following surgery he has a sustained repair.

Hygienization and control of Diplodia seriata fungus in vine pruning waste composting and its seasonal variability in open and closed systems.

Science.gov (United States)

Matei, Petruta M; Sánchez-Báscones, Mercedes; Bravo-Sánchez, Carmen T; Martín-Ramos, Pablo; Martín-Villullas, M Teresa; García-González, M Cruz; Hernández-Navarro, Salvador; Navas-Gracia, Luis M; Martín-Gil, Jesús

2016-12-01

After the ban on sodium arsenite, waste management alternatives to the prevalent burning method, such as the hygienization and biodegradation in solid phase by composting, are required for the pruned material from grapevines affected by various fungi. In this work the dynamics of a fungus associated with vine decay (Diplodia seriata) during the composting process of a mixture of laying hen manure and vine pruning waste (2:1w/w) have been investigated in an open pile and a discontinuous closed biodigester. Through the optimization of the various physical-chemical parameters, hygienization of the infected waste materials was attained, yielding class-A organo-mineral fertilizers. Nevertheless, important differences in the efficiency of each system were observed: whereas in the open pile it took 10days to control D. seriata and 35 additional composting days to achieve full inactivation, in the discontinuous biodigester the fungus was entirely inactivated within the first 3-7days. Finally, the impact of seasonal variability was assessed and summer temperatures shown to have greater significance in the open pile. Copyright © 2016 Elsevier Ltd. All rights reserved.

Colonic volvulus detected by CT scan in a case with mental retardation and prune belly syndrome

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Yoichiro Oka

2011-10-01

Full Text Available Colonic volvulus is a rare disease in children. Delayed diagnosis of the condition can often be fatal, especially in pediatric patients with mental retardation. We herein present the case of a female pediatric patient with colonic volvulus, prune belly syndrome, and mental retardation. Preoperative CT scans showed the characteristic signs of this disease. The volvulus occurred in the proximal colon of the colostomy. The release of the colonic volvulus and reconstruction of the colostomy were performed without the resection of the ischemic colon. The postoperative clinical course was uneventful.

Thinning effect on plant growth of pruned eucalypt clone

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Diego Correa Ramos

2014-06-01

Full Text Available A pruned stand of eucalypt clone underwent five thinning treatments with the removal of different proportion of the planted trees, at different ages: a 0% - unthinned, b 35% at 55 months, c 35% at 81 months, d 70% at 81 months, removing sprouts in the thinned plant stumps and, e 70% at 81 months, without coppice sprouts removal. By the age of 141 months, the Weibull distribution showed higher number of trees in the smallest diameter classes for the unthinned treatment. The 70% thinning, with thinned coppice sprouts removal, presented higher number of individuals in the largest diameter classes. Height and yield were the smallest with the removal of 70% of the trees at 81 months, maintaining coppice sprouts. The afterthinning periodic annual increment was greater by thinning 35% of the trees at 55 months resulting in greater number of trees in the largest diameter classes as compared to the other treatments. Yield was higher for the unthinned treatment. The results of this study indicated that thinning 70% of the trees at the age of 81 months, with coppice sprout removal, could be recommended to obtain trees of larger diameter for multiproduct.

Colonic volvulus detected by CT scan in a case with mental retardation and prune belly syndrome.

Science.gov (United States)

Oka, Yoichiro; Masumoto, Kouji; Nakamura, Masatoshi; Iwasaki, Akinori

2011-10-01

Colonic volvulus is a rare disease in children. Delayed diagnosis of the condition can often be fatal, especially in pediatric patients with mental retardation. We herein present the case of a female pediatric patient with colonic volvulus, prune belly syndrome, and mental retardation. Preoperative CT scans showed the characteristic signs of this disease. The volvulus occurred in the proximal colon of the colostomy. The release of the colonic volvulus and reconstruction of the colostomy were performed without the resection of the ischemic colon. The postoperative clinical course was uneventful. Copyright © 2012. Published by Elsevier B.V.

Evolutionary pruning of transfer learned deep convolutional neural network for breast cancer diagnosis in digital breast tomosynthesis.

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Samala, Ravi K; Chan, Heang-Ping; Hadjiiski, Lubomir M; Helvie, Mark A; Richter, Caleb; Cha, Kenny

2018-05-01

Deep learning models are highly parameterized, resulting in difficulty in inference and transfer learning for image recognition tasks. In this work, we propose a layered pathway evolution method to compress a deep convolutional neural network (DCNN) for classification of masses in digital breast tomosynthesis (DBT). The objective is to prune the number of tunable parameters while preserving the classification accuracy. In the first stage transfer learning, 19 632 augmented regions-of-interest (ROIs) from 2454 mass lesions on mammograms were used to train a pre-trained DCNN on ImageNet. In the second stage transfer learning, the DCNN was used as a feature extractor followed by feature selection and random forest classification. The pathway evolution was performed using genetic algorithm in an iterative approach with tournament selection driven by count-preserving crossover and mutation. The second stage was trained with 9120 DBT ROIs from 228 mass lesions using leave-one-case-out cross-validation. The DCNN was reduced by 87% in the number of neurons, 34% in the number of parameters, and 95% in the number of multiply-and-add operations required in the convolutional layers. The test AUC on 89 mass lesions from 94 independent DBT cases before and after pruning were 0.88 and 0.90, respectively, and the difference was not statistically significant (p  >  0.05). The proposed DCNN compression approach can reduce the number of required operations by 95% while maintaining the classification performance. The approach can be extended to other deep neural networks and imaging tasks where transfer learning is appropriate.

Evolutionary pruning of transfer learned deep convolutional neural network for breast cancer diagnosis in digital breast tomosynthesis

Science.gov (United States)

Samala, Ravi K.; Chan, Heang-Ping; Hadjiiski, Lubomir M.; Helvie, Mark A.; Richter, Caleb; Cha, Kenny

2018-05-01

Deep learning models are highly parameterized, resulting in difficulty in inference and transfer learning for image recognition tasks. In this work, we propose a layered pathway evolution method to compress a deep convolutional neural network (DCNN) for classification of masses in digital breast tomosynthesis (DBT). The objective is to prune the number of tunable parameters while preserving the classification accuracy. In the first stage transfer learning, 19 632 augmented regions-of-interest (ROIs) from 2454 mass lesions on mammograms were used to train a pre-trained DCNN on ImageNet. In the second stage transfer learning, the DCNN was used as a feature extractor followed by feature selection and random forest classification. The pathway evolution was performed using genetic algorithm in an iterative approach with tournament selection driven by count-preserving crossover and mutation. The second stage was trained with 9120 DBT ROIs from 228 mass lesions using leave-one-case-out cross-validation. The DCNN was reduced by 87% in the number of neurons, 34% in the number of parameters, and 95% in the number of multiply-and-add operations required in the convolutional layers. The test AUC on 89 mass lesions from 94 independent DBT cases before and after pruning were 0.88 and 0.90, respectively, and the difference was not statistically significant (p  >  0.05). The proposed DCNN compression approach can reduce the number of required operations by 95% while maintaining the classification performance. The approach can be extended to other deep neural networks and imaging tasks where transfer learning is appropriate.

Unwinding the hairball graph: Pruning algorithms for weighted complex networks

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Dianati, Navid

2016-01-01

Empirical networks of weighted dyadic relations often contain "noisy" edges that alter the global characteristics of the network and obfuscate the most important structures therein. Graph pruning is the process of identifying the most significant edges according to a generative null model and extracting the subgraph consisting of those edges. Here, we focus on integer-weighted graphs commonly arising when weights count the occurrences of an "event" relating the nodes. We introduce a simple and intuitive null model related to the configuration model of network generation and derive two significance filters from it: the marginal likelihood filter (MLF) and the global likelihood filter (GLF). The former is a fast algorithm assigning a significance score to each edge based on the marginal distribution of edge weights, whereas the latter is an ensemble approach which takes into account the correlations among edges. We apply these filters to the network of air traffic volume between US airports and recover a geographically faithful representation of the graph. Furthermore, compared with thresholding based on edge weight, we show that our filters extract a larger and significantly sparser giant component.

[Prune Belly syndrome: epidemiologic, clinic and therapeutic aspects].

Science.gov (United States)

Diao, B; Diallo, Y; Fall, P A; Ngom, G; Fall, B; Ndoye, A K; Fall, I; Ba, M; Ndoye, M; Diagne, B A

2008-07-01

Prune Belly syndrome (PBS) is a rare complex malformation with male predominance. His pathogeny is not yet completely elucidated. The goal of this work is to analyze the epidemiological, anatomoclinical and treatment aspects of a retrospective trial in Aristide-Le-Dantec Hospital. We carried out a retrospective study about 22 cases collected in the departments of urology-andrology and pediatric surgery in Aristide-Le-Dantec Hospital between April 1995 and November 2004. The mean age of the patients was 15 months with extremes of one day and 10 years. The somatic examination revealed 20 cases of complete abdominal muscle aplasia, one right partial form and the last case had a left partial form. Nineteen patients were managed with conservative treatment and three patients benefited a surgical act for urinary abnormalities. The Montfort intervention was performed in two patients respectively aged eight and 10 years. The orchidopexy, stage 1, by Fowler-Stephens technique was performed in 13 cases. Five cases of death and nine cases of testicular atrophy after orchidopexy occurred. The followings were satisfactory in the three operated patients for urinary abnormalities. The renal failure is the main cause of death. The management of the urinary tract abnormalities must be performed individually. The testis descending should be performed in newborn period to enhance the fertility chances. The abdominoplasty also should be done early for aesthetic reason and to improve pulmonary, defecation, and voiding functions.

Ethanol production from olive prunings by autohydrolysis and fermentation with Candida tropicalis

Energy Technology Data Exchange (ETDEWEB)

Garcia Martin, Juan Francisco; Bravo, Vicente [Department of Chemical Engineering, University of Granada, Campus Universitario de Fuentenueva, 18071 Granada (Spain); Cuevas, Manuel; Sanchez, Sebastian [Department of Chemical, Environmental and Materials Engineering, University of Jaen, Campus Las Lagunillas, 23071 Jaen (Spain)

2010-07-15

Hydrolysates from olive prunings (a renewable, low-cost, easily available, agricultural residue) were fermented with the unconventional yeast Candida tropicalis NBRC 0618 to produce not only ethanol fuel but also xylitol as a by-product, which adds value to the economic viability of the bioprocess. Autohydrolysis took place at 200 C in a stirred stainless-steel tank reactor. The influence of the solid/liquid ratio in the reactor was studied. Fermentation experiments were conducted in a batch-culture reactor at a temperature of 30 C, a stirring rate of 500 rpm and pH values of between 5.0 and 6.5. Under the operating conditions tested the highest yields of ethanol and xylitol were obtained with the hydrolysate fermented at pH 5.0 and solely the airflow that entered via the stirring vortex. Under these conditions, the instantaneous ethanol yield was 0.44 g g{sup -1} and the overall xylitol yield 0.13 g g{sup -1}. (author)

Penerapan Algoritma Alphabeta Pruning Sebagai Kecerdasan Buatan pada Game Pawn Battle

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Ridho Rahman Hariadi

2017-05-01

Full Text Available Catur merupakan game strategi. Catur dimainkan oleh dua orang. Ada dua jenis warna bidak pada permainan catur, yaitu: bidak hitam dan bidak putih. Agar dapat memenangkan sebuah permainan catur, pemain harus menguasai strategi-strategi dalam bermain catur. Ada banyak startegi dalam bermain catur yang hanya dapat dipahami dengan banyak bermain dan berlatih. Modul-modul cara bermain catur pada umumnya hanya menjelaskan kejadian yang biasa terjadi dalam permainan catur. Sehingga berlatih merupakan satu-satu nya cara yang dapat digunakan untuk meningkatkan kemampuan dalam bermain catur. Penelitian ini merupakan penelitian implementasi yang menggunakan algoritma Alpha Beta Prunnning sebagai kecerdasan buatan dalam permainan catur. Algoritma yang biasanya digunakan dalam permainan catur adalah algoritma Min-Max. Algoritma Min-Max merupakan algoritma yang digunakan untuk menemukan langkah terbaik dalam permainan catur. Sedangkan Algoritma Alpha Beta Pruning adalah algoritma yang digunakan untuk mencegah perluasan cabang/node untuk mendapatkan hasil pencarian langkah yang lebih baik dari sebelumnya. Penelitian ini diharapkan dapat membantu memberikan gambaran penerapan algoritma Alpha Beta Prunning yang digunakan dalam  membangun sebuah kecerdasan buatan pada permainan catur.

Evaluating Lignin-Rich Residues from Biochemical Ethanol Production of Wheat Straw and Olive Tree Pruning by FTIR and 2D-NMR

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José I. Santos

2015-01-01

Full Text Available Lignin-rich residues from the cellulose-based industry are traditionally incinerated for internal energy use. The future biorefineries that convert cellulosic biomass into biofuels will generate more lignin than necessary for internal energy use, and therefore value-added products from lignin could be produced. In this context, a good understanding of lignin is necessary prior to its valorization. The present study focused on the characterization of lignin-rich residues from biochemical ethanol production, including steam explosion, saccharification, and fermentation, of wheat straw and olive tree pruning. In addition to the composition and purity, the lignin structures (S/G ratio, interunit linkages were investigated by spectroscopy techniques such as FTIR and 2D-NMR. Together with the high lignin content, both residues contained significant amounts of carbohydrates, mainly glucose and protein. Wheat straw lignin showed a very low S/G ratio associated with p-hydroxycinnamates (p-coumarate and ferulate, whereas a strong predominance of S over G units was observed for olive tree pruning lignin. The main interunit linkages present in both lignins were β-O-4′ ethers followed by resinols and phenylcoumarans. These structural characteristics determine the use of these lignins in respect to their valorization.

Influência da densidade de plantio e sistema de podas na produção de café Influence of plant density and pruning system on the yield of coffee

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Sérgio Vasco de Toledo

1999-08-01

Full Text Available Durante 19 anos, foi conduzido um experimento em Campinas, SP, que objetivou avaliar a influência da variedade, espaçamento, número de plantas na cova e sistema de condução da planta sobre a produção de café (Coffea arabica L.. As variedades Mundo Novo e Caturra foram estudadas com cinco densidades de plantio (1, 2, 3, 5 e 6 m²/cova combinadas com uma ou duas plantas por cova e conduzidas sem podas, decotadas a 2 m de altura e recepadas em esquema predeterminado, tipo Beaumont & Fukunaga. Os resultados de 17 colheitas demonstraram que altas densidades de plantio apresentaram elevadas produções nas primeiras safras, com acentuado decréscimo após sete colheitas; a variedade Mundo Novo manteve o potencial produtivo, enquanto a Caturra diminuiu sensivelmente a produção ao longo dos anos; a adoção de um sistema de podas não influenciou na produção, e em alguns períodos foi prejudicial.An experiment with the objective of evaluating the influence of the number of plants per hole, plant density and pruning system on the yield of the Caturra and Mundo Novo varieties of Coffea arabica L. was carried out in Campinas, SP, Brazil, during 19 years. Five planting densities were evaluated: 1, 2, 3, 5 and 6 m²/hole, combined with one and two plants per hole carried out without pruning; pruning at 2 m from the soil; and, plants lapped close to the soil in a regime pre-determinated by Beaumont & Fukunaga. High planting density showed high yields in the first harvests with pronounced decrease after seven harvests. The Mundo Novo variety kept its yield potential while the Caturra variety highly decreased its yield throughout the years; the adoption of a pruning system did not influence the yield and was even prejudicial in some periods.

A comparative ecophysiology of ecolly (vitis vinifera l.) under the traditional independent long-stem pruning and crawled cordon training

International Nuclear Information System (INIS)

Nan, L.; Zhao, X.; Liu, L.; Wang, H.; Li, H.

2014-01-01

The aim of this study was to compare the ecophysiology character of Ecolly grape (Vitis vinifera L.) with the new technology-single crawled cordon training (SCCT) and traditional method-independent long-stem pruning (ILSP). The connections among net photosynthesis rate (Pn), transpiration rate (Tr), instantaneous water utilization efficiency (WUEi), stomatal conductance (Cs) and intercellular CO/sub 2/ concentration (Ci) were always mutual and inextricable in the trial. The leaves in every stage had the highest Pn respectively when growing under the light irradiance of the different period. The ILSP showed a lower total photosynthetic capacity than the SCCT. There was the total semblable Tr for two pruning plants, but lower Tr in ILSP at the every position of the prior stage and riping stage (PS and RS) excluding the growing stage (GS). The WUEi declined because of the net CO/sub 2/ assimilation saturated and the transpiration constantly fleetly increased before the photosynthetic active radiation (PAR) increased to 600 meu mol m/sup -2/ s/sup -1/. The increased WUEis from the first to the second stage deduced that stomatal closure at high irradiance reduced more Tr than Pn, while the values decreased again in the last stage indicated that stomatal opening at low irradiance added more Tr than Pn. These results suggested that it may be possible technology to change trellises in order to obtain better ecophysiology character in this study. The growth variability of vine may be affected by a particular training style. (author)

Prune-belly syndrome: case series and review of the literature regarding early prenatal diagnosis, epidemiology, genetic factors, treatment, and prognosis.

Science.gov (United States)

Tonni, Gabriele; Ida, Vito; Alessandro, Ventura; Bonasoni, Maria Paola

2013-02-01

Prune-belly syndrome (PBS) is a rare congenital syndrome characterized by deficient abdominal muscles, urinary tract malformation, and in males, cryptorchidism and has an estimated incidence of 1 in 35,000 to 1 in 50,000 live births. The syndrome might be due to severe bladder outlet obstruction or to abdominal muscle deficiency secondary to a migrational defect of the lateral mesoblast between weeks 6 and 7 of pregnancy. The current review of the medical record reports a special focus on epidemiology, genetic factors, early prenatal diagnosis clusters, treatment, and prognosis of PBS.

Dictionary Pruning with Visual Word Significance for Medical Image Retrieval.

Science.gov (United States)

Zhang, Fan; Song, Yang; Cai, Weidong; Hauptmann, Alexander G; Liu, Sidong; Pujol, Sonia; Kikinis, Ron; Fulham, Michael J; Feng, David Dagan; Chen, Mei

2016-02-12

Content-based medical image retrieval (CBMIR) is an active research area for disease diagnosis and treatment but it can be problematic given the small visual variations between anatomical structures. We propose a retrieval method based on a bag-of-visual-words (BoVW) to identify discriminative characteristics between different medical images with Pruned Dictionary based on Latent Semantic Topic description. We refer to this as the PD-LST retrieval. Our method has two main components. First, we calculate a topic-word significance value for each visual word given a certain latent topic to evaluate how the word is connected to this latent topic. The latent topics are learnt, based on the relationship between the images and words, and are employed to bridge the gap between low-level visual features and high-level semantics. These latent topics describe the images and words semantically and can thus facilitate more meaningful comparisons between the words. Second, we compute an overall-word significance value to evaluate the significance of a visual word within the entire dictionary. We designed an iterative ranking method to measure overall-word significance by considering the relationship between all latent topics and words. The words with higher values are considered meaningful with more significant discriminative power in differentiating medical images. We evaluated our method on two public medical imaging datasets and it showed improved retrieval accuracy and efficiency.

PEMANGKASAN AKAR DAN INOKULASI JMA SEBAGAI UPAYA PENINGKATAN FITOREMEDIASI TANAH TERCEMAR MERKURI AKIBAT PENAMBANGAN EMAS OLEH TANAMAN JATI DI KOKAP KULON PROGO YOGYAKARTA (Under ground root pruning and JMA inoculation to improve phytoremediation of soil contaminated with mercury due to gold mining by Tectona grandis in Kokap Kulonprogo Yogyakarta

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Akhsin Zulkoni

2017-01-01

Full Text Available ABSTRAK Penelitian ini bertujuan untuk mengetahui pengaruh pemangkasan akar (underground root pruning/URP terhadap fitoremediasi tanah yang tercemar merkuri di Kokap Kulon Progo Yogyakarta. Penelitian ini dilaksanakan menggunakan rancangan acak kelompok lengkap dengan tiga ulangan. Faktor pertama adalah URP, yaitu dengan dan tanpa URP. Faktor kedua ialah takaran Jamur Mikoriza Arbuskula (JMA, meliputi 0; 50; 100, dan 150 g/pot. Hasil penelitian telah membuktikan bahwa pemangkasan akar serta inokulasi JMA ke dalam tanah sisa olahan penambangan emas telah berhasil memacu proses fitoremediasi melalui perluasan rizosfer. Serapan merkuri oleh tanaman Jati yang menjalani pemangkasan akar serta inokulasi JMA sebanyak 100% paling tinggi dibanding perlakuan lain maupun kontrol. Pada perlakuan ini, efisiensi penurunan merkuri di dalam tanah oleh tanaman jati sebesar 88,61%, sedangkan kontrol hanya mencapai 64,11%.   ABSTRACT This study aims to determine the effect of underground root pruning (URP of the mercury-contaminated soil phytoremediation in Kokap Kulon Progo, Yogyakarta. This study was conducted using complete randomized block design with three replications. The first factor is the URP, that divided as with and without URP (root pruning. The second factor is the dose of JMA, are 0; 50; 100, and 150 g/pot. Results of studies have proven that the root pruning and inoculation of JMA into the residual gold mining soil has successfully accelerated the process of phytoremediation through the expansion of the rhizosphere. Mercury uptake by Tectona grandis, Linn F that is with root pruning and 100% JMA inoculation are highest other treatment and control. In this treatment, the removal efficiency of mercury in the soil by plants amounted to 88.61% identity, meanwhile control only reached 64.11%.

Muscarinic Acetylcholine Receptor M3 Mutation Causes Urinary Bladder Disease and a Prune-Belly-like Syndrome.

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Weber, Stefanie; Thiele, Holger; Mir, Sevgi; Toliat, Mohammad Reza; Sozeri, Betül; Reutter, Heiko; Draaken, Markus; Ludwig, Michael; Altmüller, Janine; Frommolt, Peter; Stuart, Helen M; Ranjzad, Parisa; Hanley, Neil A; Jennings, Rachel; Newman, William G; Wilcox, Duncan T; Thiel, Uwe; Schlingmann, Karl Peter; Beetz, Rolf; Hoyer, Peter F; Konrad, Martin; Schaefer, Franz; Nürnberg, Peter; Woolf, Adrian S

2011-11-11

Urinary bladder malformations associated with bladder outlet obstruction are a frequent cause of progressive renal failure in children. We here describe a muscarinic acetylcholine receptor M3 (CHRM3) (1q41-q44) homozygous frameshift mutation in familial congenital bladder malformation associated with a prune-belly-like syndrome, defining an isolated gene defect underlying this sometimes devastating disease. CHRM3 encodes the M3 muscarinic acetylcholine receptor, which we show is present in developing renal epithelia and bladder muscle. These observations may imply that M3 has a role beyond its known contribution to detrusor contractions. This Mendelian disease caused by a muscarinic acetylcholine receptor mutation strikingly phenocopies Chrm3 null mutant mice. Copyright © 2011 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

Modified abdominoplasty for patients with the Prune Belly syndrome.

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Dénes, Francisco Tibor; Lopes, Roberto Iglesias; Oliveira, Lorena Marçalo; Tavares, Alessandro; Srougi, Miguel

2014-02-01

To present the results of a new technique for abdominoplasty in patients with the Prune Belly syndrome (PBS). Since 1985, 46 children with PBS underwent surgical treatment that included urinary tract reconstruction (UTR), orchidopexy, and abdominoplasty. In 41 patients, we performed the abdominoplasty as follows: (1) fusiform longitudinal resection of the mid-abdominal skin and subcutaneous tissue, with preservation of the musculo-aponeurotic fascia (MAF) and umbilicus, (2) ellipsoid unilateral longitudinal incision of the MAF in the most weakened side of the abdomen, producing 2 flaps, with the umbilicus being kept intact in the widest flap, (3) after UTR and bilateral orchiopexy, suture fixation of the widest MAF layer to the inner side of the contralateral abdominal wall, creating an inner MAF layer, (4) lateral suture fixation of the other flap over the inner layer, creating an outer MAF layer with a buttonhole exposing the umbilicus, that is sutured to the outer layer, and (5) approximation of the skin edges with incorporation of the umbilicus in the suture. Skin coaptation was excellent in all patients, and no trimming was necessary in incision extremities. There was no dehiscence or skin necrosis and all patients presented immediate improvement of the abdominal tonus and appearance. Further improvement with growth was observed in all except 4 patients, 2 requiring secondary abdominoplasties. We conclude that this technique is applicable in all forms of weakened abdomen typical of PBS, even in asymmetrical cases, requiring only 1 MAF incision, with good cosmetic and functional results. Copyright © 2014 Elsevier Inc. All rights reserved.

Prenatal diagnosis of prune-belly syndrome at 13 weeks of gestation: case report and review of literature.

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Papantoniou, Nikolaos; Papoutsis, Dimitrios; Daskalakis, Georgios; Chatzipapas, Ioannis; Sindos, Michael; Papaspyrou, Irini; Mesogitis, Spiridon; Antsaklis, Aris

2010-10-01

We present a case report of a foetus with Prune-Belly syndrome (PBS) which was diagnosed sonographically during the 13th week of gestation and review of the literature. Sonographic diagnosis was based on abnormally distended urinary bladder and abdomen and absence of 'keyhole sign'. Termination was performed on parental request and post-mortem examination revealed absence of abdominal wall musculature and the distended urinary bladder in a male foetus. Prenatal diagnosis of PBS is based on ultrasound and is usually diagnosed in the second trimester. In the first trimester there are very few reports to date. Prognosis and possible treatment options are herein discussed as well as the underlying mechanisms that may explain the clinical presentation of the syndrome.

Efeito da poda do tipo decote no controle da xylella fastidiosa em cultivares de cafeeiro "Decote" type pruning effect upon xylella fastidiosa control in coffee cultivars

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Rachel Benetti Queiroz-Voltan

2007-01-01

' de C. canephora, foram os tratamentos com maior severidade e, novamente no período chuvoso, as diferenças não foram observadas. Concluiu-se, portanto, que a prática da poda do tipo decote não resultou nesse experimento em um controle eficiente da X. fastidiosa em cafeeiros de C. arabica de pé-franco ou enxertados e infectados por esta moléstia.Xylella fastidiosa plant colonization causes damages to the coffee production and nowadays there is no available economic chemical control to this bacterium. Adequate cultivation management as the use of bacteria-free scions and control of the insect vector (cicadas, are practices that may attenuate the disease incidence. Pruning, that has been recommended for citrus and vines for disease control, still does not have its efficiency proved for coffee plants. This research work aimed to quantify the proportion of xylem vessel elements obstructed by the bacteria, as well as to evaluate the disease external symptoms severity after the "decote" type pruning. In June 2003 (dry season, eight months after pruning, it was observed that 4% of the petiole vessel elements were obstructed by X. fastidiosa, 2% of the central vein and 1% of the stem. In the rainy season, 14 months after pruning, the obstruction proportion of vessel elements decreased to 2% in the petiole and to 1% in central vein and stem respectively. Therefore, the pruning practice decreased slightly the xylem vessel obstruction caused by the bacteria in the dry period, once prior to pruning a 6% obstruction in the petiole was observed. The new branches sprouted during the rainy season seemed to compensate obstruction in older branches, thus decreasing vase obstruction proportion. In 2003 there were no differences in the disease symptom severity among treatments in the two periods (dry and rainy season, however, in the dry period of 2004, 'Catuaí Vermelho IAC 81' and 'Mundo Novo IAC 515-20' cultivars, grafted on C. canephora 'Apoatã IAC 2258', presented higher

Further evidence of the etiology of prune belly syndrome provided by a transient massive intraabdominal cyst in a female.

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Wijesinghe, Uddaka S; Muthucumaru, Mathievathaniy; Beasley, Spencer W

2016-08-01

We present a female neonate born with prune belly syndrome (PBS) in whom a large intraabdominal cyst was diagnosed at 12weeks of gestation. Rapid and exponential growth of the cyst caused pressure effects on the intraabdominal organs and stretching of the anterior abdominal wall by 19weeks of gestation. This led to drainage of the massive cyst at 20weeks of gestation to prevent fetal demise. This case provides further clues to the likely etiology of PBS: transient stretching and attenuation of the fetal abdominal wall secondary to gross fetal abdominal distension - from any cause. Copyright © 2016 Elsevier Inc. All rights reserved.

Ebola Virus and Marburg Virus

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Ebola virus and Marburg virus Overview Ebola virus and Marburg virus are related viruses that cause hemorrhagic fevers — illnesses marked by severe bleeding (hemorrhage), organ failure and, in many ...

The influence of virus infections on antioxidant levels in the genetically modified plum variety "Honeysweet" (Prunus domestica L.

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Jiri Sochor

2015-08-01

Full Text Available It is well-known that polyphenolic compounds are found abundantly in fruit, but various kinds of diseases  lower these levels. This work measures total polyphenolic content, antioxidant activity and the levels of specific important antioxidants in fruits of the genetically modified (GM plum variety HoneySweet, trees  which were previously inoculated with a range of different virus infections.  These were the Plum Pox virus (PPV, Prune Dwarf virus (PDV and Apple Chlorotic Leaf-Spot virus (ACLSV. Uninoculated trees were used as controls. Antioxidant activity was measured using four different photometric  methods – DPPH (2,2-diphenyl-1-picrylhydrazyl, DMPD (N-dimethyl-p-phenylenediamine, ABTS (2,2-azino-bis-3-ethylbenzothiazoline-6-sulfonic acid and FRAP (Ferric reducing antioxidant power. Total polyphenol content was measured using the Folin–Ciocalteau method. The profiles of 10 specific antioxidant constituents in the fruits of the GM plum variety HoneySweet were detected and analyzed, since these are of interest for their role in human diets and could play a role in the resistance of plants to viruses. Detection was made using HPLC with UV-VIS detection.  They were: gallic acid, p-coumaric acid, 4-aminobenzoic acid, chlorogenic acid, caffeic acid, ferulic acid, vanillin, rutin and quercetin. The compound with the highest concentration was chlorogenic acid (587 mg/100 g, and that with the lowest was p-coumaric acid (0.95 mg/100 g. Of the four methods of antioxidant activity used, in three the lowest levels of antioxidant activity were seen where the PPV virus was combined with ACLSV, and in three the highest levels were seen in the un-inoculated control without any infection. The highest values of total polyphenols were seen in the control (65.3 mg/100 g, followed by infection of PPV, then treatment PPV, PDV and ACLSV, then treatment PPV and PDV and finally the lowest levels were seen in treatment PPV and ACLSV (44.2 mg/100 g, which

Deep sequencing reveals a novel closterovirus associated with wild rose leaf rosette disease.

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He, Yan; Yang, Zuokun; Hong, Ni; Wang, Guoping; Ning, Guogui; Xu, Wenxing

2015-06-01

A bizarre virus-like symptom of a leaf rosette formed by dense small leaves on branches of wild roses (Rosa multiflora Thunb.), designated as 'wild rose leaf rosette disease' (WRLRD), was observed in China. To investigate the presumed causal virus, a wild rose sample affected by WRLRD was subjected to deep sequencing of small interfering RNAs (siRNAs) for a complete survey of the infecting viruses and viroids. The assembly of siRNAs led to the reconstruction of the complete genomes of three known viruses, namely Apple stem grooving virus (ASGV), Blackberry chlorotic ringspot virus (BCRV) and Prunus necrotic ringspot virus (PNRSV), and of a novel virus provisionally named 'rose leaf rosette-associated virus' (RLRaV). Phylogenetic analysis clearly placed RLRaV alongside members of the genus Closterovirus, family Closteroviridae. Genome organization of RLRaV RNA (17,653 nucleotides) showed 13 open reading frames (ORFs), except ORF1 and the quintuple gene block, most of which showed no significant similarities with known viral proteins, but, instead, had detectable identities to fungal or bacterial proteins. Additional novel molecular features indicated that RLRaV seems to be the most complex virus among the known genus members. To our knowledge, this is the first report of WRLRD and its associated closterovirus, as well as two ilarviruses and one capilovirus, infecting wild roses. Our findings present novel information about the closterovirus and the aetiology of this rose disease which should facilitate its control. More importantly, the novel features of RLRaV help to clarify the molecular and evolutionary features of the closterovirus. © 2014 BSPP AND JOHN WILEY & SONS LTD.

Study of Testicular Structure in Fetuses with Prune Belly Syndrome

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Luciano A. Favorito

2017-01-01

Full Text Available Purpose. To compare the structure of the testis in fetuses with prune belly syndrome (PBS to normal controls. Materials and Methods. We studied 6 testes obtained from 3 fetuses with PBS and 14 testes from 7 male fetuses. The testicular specimens were cut into 5-μm thick sections and stained with hematoxylin and eosin (HE, to observe the seminiferous tubules; Weigert’s solution to observe elastic fibers; and picrosirius red to observe collagen. The images were captured with an Olympus BX51 microscope and Olympus DP70 camera. The stereological analysis was done with the Image Pro and Image J programs. Means were statistically compared using the Mann–Whitney U test (p<0.005. Results. Quantitative analysis documented no differences (p=0.4 in number of seminiferous tubules (ST in PBS testes (mean = 8.87%, SD=1.59, when compared to the control (mean = 11.4%, SD=2.99 and no differences (p=0.8 in diameter of ST in PBS testes (mean = 52.85 μm, SD=1.58 when compared to the control group (mean = 53.17 μm, SD=1.55, but we did observe a lower number (p=0.0002 of Leydig cells in the PBS testes (mean = 67.03% and SD=3.697 when compared to the control group (mean = 90.1% and SD=2.986. Conclusions. Our study showed a lower concentration of Leydig cells in the triad syndrome fetuses.

Study of Testicular Structure in Fetuses with Prune Belly Syndrome.

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Favorito, Luciano A; Costa, Suelen F; Costa, Waldemar S; Vieiralves, Rodrigo; Bernardo, Fabio O; Sampaio, Francisco J B

2017-01-01

To compare the structure of the testis in fetuses with prune belly syndrome (PBS) to normal controls. We studied 6 testes obtained from 3 fetuses with PBS and 14 testes from 7 male fetuses. The testicular specimens were cut into 5- μ m thick sections and stained with hematoxylin and eosin (HE), to observe the seminiferous tubules; Weigert's solution to observe elastic fibers; and picrosirius red to observe collagen. The images were captured with an Olympus BX51 microscope and Olympus DP70 camera. The stereological analysis was done with the Image Pro and Image J programs. Means were statistically compared using the Mann-Whitney U test ( p < 0.005). Quantitative analysis documented no differences ( p = 0.4) in number of seminiferous tubules (ST) in PBS testes (mean = 8.87%, SD = 1.59), when compared to the control (mean = 11.4%, SD = 2.99) and no differences ( p = 0.8) in diameter of ST in PBS testes (mean = 52.85  μ m, SD = 1.58) when compared to the control group (mean = 53.17  μ m, SD = 1.55), but we did observe a lower number ( p = 0.0002) of Leydig cells in the PBS testes (mean = 67.03% and SD = 3.697) when compared to the control group (mean = 90.1% and SD = 2.986). Our study showed a lower concentration of Leydig cells in the triad syndrome fetuses.

Prune belly syndrome, splenic torsion, and malrotation: a case report.

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Tran, Sifrance; Grossman, Eric; Barsness, Katherine A

2013-02-01

An 18 year old male with a history of prune belly syndrome (PBS) presented with acute abdominal pain and palpable left upper quadrant mass. Computed tomography (CT) of the abdomen revealed a medialized spleen with a "whirl sign" in the splenic vessels, consistent with splenic torsion. Coincidentally, the small bowel was also noted to be on the right side of the abdomen, while the colon was located on the left, indicative of malrotation. Emergent diagnostic laparoscopy confirmed splenic torsion and intestinal malrotation. Successful laparoscopic reduction of the splenic torsion was achieved, however, conversion to an open procedure by a vertical midline incision was necessary owing to the patient's unique anatomy. Open splenopexy with a mesh sling and Ladd's procedure were subsequently performed. Malrotation and wandering spleen are known, rare associated anomalies in PBS; however, both have not been reported concurrently in a patient with PBS in the literature. In patients with PBS, acute abdominal pain, and an abdominal mass, high clinical suspicion for gastrointestinal malformations and prompt attention can result in spleen preservation and appropriate malrotation management. We present a case of a teenager who presented with a history of PBS, acute abdominal pain, and a palpable abdominal mass. The patient was found to have splenic torsion and intestinal malrotation. The clinical findings, diagnostic imaging, and surgical treatment options of splenic torsion are reviewed. Copyright © 2013 Elsevier Inc. All rights reserved.

27 years of experience with the comprehensive surgical treatment of prune belly syndrome.

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Lopes, R I; Tavares, A; Srougi, M; Dénes, F T

2015-10-01

Prune belly syndrome (PBS) presents with three main features: abdominal wall flaccidity, urological abnormalities and cryptorchidism. As a result, urologists must consider the eventual repair of the abdominal wall flaccidity and urinary tract abnormalities, and the mandatory correction of cryptorchidism, as well as decide whether to perform the procedures in a single comprehensive approach or in multiple steps. To report experiences with comprehensive surgical management of prune belly syndrome. From 1987 to 2014, 46 children with PBS were submitted for comprehensive surgical treatment. According to individual needs, treatment aimed to correct the abdominal flaccidity, reconstruct the urinary tract, and perform bilateral orchiopexy and circumcision, which were performed in one procedure. Urinary tract reconstruction was indicated whenever pyelo-ureteral dilatation with evidence of significant stasis and/or vesicoureteral reflux was associated with recurrent urinary tract infections (UTI). Treatment for this cohort included: 44 abdominoplasties, 40 upper urinary tract reconstructions, 44 cystoplasties associated with three appendico-vesicostomies, 46 bilateral orchiopexies and 36 circumcisions. The median age at surgery was 16 months and children were followed for a median of 143 months. Abdominal appearance and tonus were improved in 90% of the children after the primary surgery and 100% after reoperation. Upper urinary tract reconstruction was performed in most children and long-term follow-up showed functional stabilization of the urinary tract in about 90% of the children, with progression to renal failure in 10%. Lower urinary tract reconstruction was performed in most children (95.6%); on late follow-up, continence was observed in 81% of them, while incontinence was present in 19% and usually associated with polyuria. Adequate bladder emptying was possible in most boys (82.6%), while the remaining required clean intermittent catheterization. Pre-operative UTI

Effects of late winter pruning at different phenological stages on vine yield components and berry composition in La Rioja, North-central Spain

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Wei Zheng

2017-11-01

Significance and impact of the study: The outcomes of this research open a door for the winegrowers to realize the yield control in a simple way. Also, for those who only pursue wines of top quality (regardless of production, a very late winter pruning might provide them with high-quality grapes. Moreover, as can be seen obviously from our results, viticulturists could postpone the budburst date to whatever extent they wish thus reducing the risk of spring frost injury to zero, though this point is not our focus in the study.

Usability-driven pruning of large ontologies: the case of SNOMED CT.

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López-García, Pablo; Boeker, Martin; Illarramendi, Arantza; Schulz, Stefan

2012-06-01

To study ontology modularization techniques when applied to SNOMED CT in a scenario in which no previous corpus of information exists and to examine if frequency-based filtering using MEDLINE can reduce subset size without discarding relevant concepts. Subsets were first extracted using four graph-traversal heuristics and one logic-based technique, and were subsequently filtered with frequency information from MEDLINE. Twenty manually coded discharge summaries from cardiology patients were used as signatures and test sets. The coverage, size, and precision of extracted subsets were measured. Graph-traversal heuristics provided high coverage (71-96% of terms in the test sets of discharge summaries) at the expense of subset size (17-51% of the size of SNOMED CT). Pre-computed subsets and logic-based techniques extracted small subsets (1%), but coverage was limited (24-55%). Filtering reduced the size of large subsets to 10% while still providing 80% coverage. Extracting subsets to annotate discharge summaries is challenging when no previous corpus exists. Ontology modularization provides valuable techniques, but the resulting modules grow as signatures spread across subhierarchies, yielding a very low precision. Graph-traversal strategies and frequency data from an authoritative source can prune large biomedical ontologies and produce useful subsets that still exhibit acceptable coverage. However, a clinical corpus closer to the specific use case is preferred when available.

Combined laparoscopic and open technique for repair of congenital abdominal hernia: A case report of prune belly syndrome.

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Ye, Qinghuang; Chen, Yan; Zhu, Jinhui; Wang, Yuedong

2017-10-01

Prune belly syndrome (PBS) is a rare congenital disorder among adults, and the way for repairing abdominal wall musculature has no unified standard. We described combining laparoscopic and open technique in an adult male who presented with PBS. Physical examination and radiological imaging verified the case of PBS. The deficiency of abdominal wall musculature was repaired by combining laparoscopic and open technique using a double-deck complex patch. The patient successfully underwent abdominal wall repair by combining laparoscopic and open technique. Postoperative recovery was uneventful, and improvement in symptom was significant in follow-up after 3, 6, 12, and 24 months. Combining laparoscopic and open technique for repair of deficiency of abdominal wall musculature in PBS was an exploratory way to improve life quality.

Prune belly syndrome with overlapping presentation of partial urorectal septum malformation sequence in a female newborn with absent perineal openings.

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Farooqui, Azhar; AlAqeel, Alaa; Habib, Zakaria

2014-01-01

Prune belly syndrome (PBS) is a rare congenital anomaly characterized in males by a triad of anomalous genitourinary tract, deficient development of abdominal wall muscles, and bilateral cryptorchidism. Although similar anomalies have been reported in females, by definition they do not full fill the classical triad. Urorectal septum malformation sequence (URSM) is a lethal condition characterized by presence of ambiguous genitalia, absent perineal openings (urogenital and anal), and lumbosacral abnormalities. In this original case report, the authors discuss the presentation and management of what would be analogous to a Woodhouse category 1 PBS in a female newborn associated with an overlapping presentation of URSM.

Prune Belly Syndrome with Overlapping Presentation of Partial Urorectal Septum Malformation Sequence in a Female Newborn with Absent Perineal Openings

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Azhar Farooqui

2014-01-01

Full Text Available Prune belly syndrome (PBS is a rare congenital anomaly characterized in males by a triad of anomalous genitourinary tract, deficient development of abdominal wall muscles, and bilateral cryptorchidism. Although similar anomalies have been reported in females, by definition they do not full fill the classical triad. Urorectal septum malformation sequence (URSM is a lethal condition characterized by presence of ambiguous genitalia, absent perineal openings (urogenital and anal, and lumbosacral abnormalities. In this original case report, the authors discuss the presentation and management of what would be analogous to a Woodhouse category 1 PBS in a female newborn associated with an overlapping presentation of URSM.

Prune belly syndrome associated with cloacal anomaly, patent urachal remnant, and omphalocele in a female infant.

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Giuliani, Stefano; Vendryes, Christopher; Malhotra, Ajay; Shaul, Donald B; Anselmo, Dean M

2010-11-01

Prune belly syndrome (PBS), megacystis-microcolon-intestinal hypoperistalsis (MMIH), and omphalocele-exstrophy of the bladder-imperforate anus-spine abnormalities complex (OEIS) are rare congenital malformations of the newborn that lead to incomplete formation of the gastrointestinal and genitourinary tract systems. To date, incomplete mesodermal development is identified as the cause for all these complex genetic syndromes even if the etiology is still unknown. We present an original case sharing characteristics common to PBS, MMIH, and OEIS complex, without a clear inclination toward any particular one. This case hints toward a common pathway in the creation of the 3 syndromes. We hypothesize that they are a spectrum of malformations based on the time frame when the mesoderm fails to create a normal interaction between infraumbilical mesoderm, urorectal septum, lumbosacral somites in the formation of the abdominal wall and the genitourinary and lower gastrointestinal tracts. Published by Elsevier Inc.

Closing oil palm yield gaps among Indonesian smallholders through industry schemes, pruning, weeding and improved seeds.

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Soliman, T; Lim, F K S; Lee, J S H; Carrasco, L R

2016-08-01

Oil palm production has led to large losses of valuable habitats for tropical biodiversity. Sparing of land for nature could in theory be attained if oil palm yields increased. The efficiency of oil palm smallholders is below its potential capacity, but the factors determining efficiency are poorly understood. We employed a two-stage data envelopment analysis approach to assess the influence of agronomic, supply chain and management factors on oil palm production efficiency in 190 smallholders in six villages in Indonesia. The results show that, on average, yield increases of 65% were possible and that fertilizer and herbicide use was excessive and inefficient. Adopting industry-supported scheme management practices, use of high-quality seeds and higher pruning and weeding rates were found to improve efficiency. Smallholder oil palm production intensification in Indonesia has the capacity to increase production by 26%, an equivalent of 1.75 million hectares of land.

Virus-Vectored Influenza Virus Vaccines

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Tripp, Ralph A.; Tompkins, S. Mark

2014-01-01

Despite the availability of an inactivated vaccine that has been licensed for >50 years, the influenza virus continues to cause morbidity and mortality worldwide. Constant evolution of circulating influenza virus strains and the emergence of new strains diminishes the effectiveness of annual vaccines that rely on a match with circulating influenza strains. Thus, there is a continued need for new, efficacious vaccines conferring cross-clade protection to avoid the need for biannual reformulation of seasonal influenza vaccines. Recombinant virus-vectored vaccines are an appealing alternative to classical inactivated vaccines because virus vectors enable native expression of influenza antigens, even from virulent influenza viruses, while expressed in the context of the vector that can improve immunogenicity. In addition, a vectored vaccine often enables delivery of the vaccine to sites of inductive immunity such as the respiratory tract enabling protection from influenza virus infection. Moreover, the ability to readily manipulate virus vectors to produce novel influenza vaccines may provide the quickest path toward a universal vaccine protecting against all influenza viruses. This review will discuss experimental virus-vectored vaccines for use in humans, comparing them to licensed vaccines and the hurdles faced for licensure of these next-generation influenza virus vaccines. PMID:25105278

Rare copy number variants identified in prune belly syndrome.

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Boghossian, Nansi S; Sicko, Robert J; Giannakou, Andreas; Dimopoulos, Aggeliki; Caggana, Michele; Tsai, Michael Y; Yeung, Edwina H; Pankratz, Nathan; Cole, Benjamin R; Romitti, Paul A; Browne, Marilyn L; Fan, Ruzong; Liu, Aiyi; Kay, Denise M; Mills, James L

2018-03-01

Prune belly syndrome (PBS), also known as Eagle-Barrett syndrome, is a rare congenital disorder characterized by absence or hypoplasia of the abdominal wall musculature, urinary tract anomalies, and cryptorchidism in males. The etiology of PBS is largely unresolved, but genetic factors are implicated given its recurrence in families. We examined cases of PBS to identify novel pathogenic copy number variants (CNVs). A total of 34 cases (30 males and 4 females) with PBS identified from all live births in New York State (1998-2005) were genotyped using Illumina HumanOmni2.5 microarrays. CNVs were prioritized if they were absent from in-house controls, encompassed ≥10 consecutive probes, were ≥20 Kb in size, had ≤20% overlap with common variants in population reference controls, and had ≤20% overlap with any variant previously detected in other birth defect phenotypes screened in our laboratory. We identified 17 candidate autosomal CNVs; 10 cases each had one CNV and four cases each had two CNVs. The CNVs included a 158 Kb duplication at 4q22 that overlaps the BMPR1B gene; duplications of different sizes carried by two cases in the intron of STIM1 gene; a 67 Kb duplication 202 Kb downstream of the NOG gene, and a 1.34 Mb deletion including the MYOCD gene. The identified rare CNVs spanned genes involved in mesodermal, muscle, and urinary tract development and differentiation, which might help in elucidating the genetic contribution to PBS. We did not have parental DNA and cannot identify whether these CNVs were de novo or inherited. Further research on these CNVs, particularly BMP signaling is warranted to elucidate the pathogenesis of PBS. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Composting sewage sludge with green waste from tree pruning

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Sarah Mello Leite Moretti

2015-10-01

Full Text Available Sewage sludge (SS has been widely used as organic fertilizer. However, its continuous use can cause imbalances in soil fertility as well as soil-water-plant system contamination. The study aimed to evaluate possible improvements in the chemical and microbiological characteristics of domestic SS, with low heavy metal contents and pathogens, through the composting process. Two composting piles were set up, based on an initial C/N ratio of 30:1, with successive layers of tree pruning waste and SS. The aeration of piles was performed by mechanical turnover when the temperature rose above 65 ºC. The piles were irrigated when the water content was less than 50 %. Composting was conducted for 120 days. Temperature, moisture content, pH, electrical conductivity (EC, carbon and nitrogen contents, and fecal coliforms were monitored during the composting. A reduction of 58 % in the EC of the compost (SSC compared with SS was observed and the pH reduced from 7.8 to 6.6. There was an increase in the value of cation exchange capacity/carbon content (CEC/C and carbon content. Total nitrogen remained constant and N-NO3- + N-NH4+ were immobilised in organic forms. The C/N ratio decreased from 25:1 to 12:1. Temperatures above 55 ºC were observed for 20 days. After 60 days of composting, fecal coliforms were reduced from 107 Most Probable Number per gram of total solids (MPN g−1 to 104 MPN g−1. I one pile the 103 MPN g−1 reached after 90 days in one pile; in another, there was recontamination from 105 to 106 MPN g−1. In SSC, helminth eggs were eliminated, making application sustainable for agriculture purposes.

Mining of high utility itemsets of size-2 with pruning strategies and negative item values for B2C companies based on experiential marketing approach

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Gaurav Gahlot

2016-09-01

Full Text Available Business to customer (B2C marketing for the retail organisations is the most rapid adoption made by the developed countries, while it has the pitfalls in the developing nations. B2C companies have been continually putting some or the other lucrative offers and schemes on their manufactured products. There happens to be no logical demand of clubbing the sale of two products. The only need of such clubbing is the financial crisis which the company wants to overcome. Information technology can renew and make the competitive advantage for B2C companies. In this paper, a novel way for finding the itemset clubs is proposed, hence extending Apriori algorithm. The proposed methodology aims at finding the combinations of the products which can be sold together with the high levels of utility. This allows for making good profits for the company. Unlike contemporary way of items bearing positive values, negative item values have been looked into. The MHUIS-2wPS algorithm utilises the transactional experiences of the retail stores and outputs the size-2 clubs. The MHUI-NIV algorithm caters for the items with negative item values. The dissertation applies various pruning strategies for the discovery of high utility itemsets. These prunings will help remove the unnecessary formation of the low utility extensions. Later, various datasets have been used to show the essence of the algorithms.

Suppression of immunodeficiency virus-associated neural damage by the p75 neurotrophin receptor ligand, LM11A-31, in an in vitro feline model.

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Meeker, Rick B; Poulton, Winona; Feng, Wen-hai; Hudson, Lola; Longo, Frank M

2012-06-01

Feline immunodeficiency virus (FIV) infection like human immunodeficiency virus (HIV), produces systemic and central nervous system disease in its natural host, the domestic cat, that parallels the pathogenesis seen in HIV-infected humans. The ability to culture feline nervous system tissue affords the unique opportunity to directly examine interactions of infectious virus with CNS cells for the development of models and treatments that can then be translated to a natural infectious model. To explore the therapeutic potential of a new p75 neurotrophin receptor ligand, LM11A-31, we evaluated neuronal survival, neuronal damage and calcium homeostasis in cultured feline neurons following inoculation with FIV. FIV resulted in the gradual appearance of dendritic beading, pruning of processes and shrinkage of neuronal perikarya in the neurons. Astrocytes developed a more activated appearance and there was an enhanced accumulation of microglia, particularly at longer times post-inoculation. Addition of 10 nM LM11A-31, to the cultures greatly reduced or eliminated the neuronal pathology as well as the FIV effects on astrocytes and microglia. LM11A-31 also, prevented the development of delayed calcium deregulation in feline neurons exposed to conditioned medium from FIV treated macrophages. The suppression of calcium accumulation prevented the development of foci of calcium accumulation and beading in the dendrites. FIV replication was unaffected by LM11A-31. The strong neuroprotection afforded by LM11A-31 in an infectious in vitro model indicates that LM11A-31 may have excellent potential for the treatment of HIV-associated neurodegeneration.

LHCb: Optimising query execution time in LHCb Bookkeeping System using partition pruning and partition wise joins

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Mathe, Z

2013-01-01

The LHCb experiment produces a huge amount of data which has associated metadata such as run number, data taking condition (detector status when the data was taken), simulation condition, etc. The data are stored in files, replicated on the Computing Grid around the world. The LHCb Bookkeeping System provides methods for retrieving datasets based on their metadata. The metadata is stored in a hybrid database model, which is a mixture of Relational and Hierarchical database models and is based on the Oracle Relational Database Management System (RDBMS). The database access has to be reliable and fast. In order to achieve a high timing performance, the tables are partitioned and the queries are executed in parallel. When we store large amounts of data the partition pruning is essential for database performance, because it reduces the amount of data retrieved from the disk and optimises the resource utilisation. This research presented here is focusing on the extended composite partitioning strategy such as rang...

[Peritoneal dialysis in adult patients with prune belly syndrome: an impossible challenge?].

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Musone, Dario; Nicosia, Valentina; D'Alessandro, Riccardo; Treglia, Antonio; Saltarelli, Giuseppe; Montella, Maurizio; Sparagna, Alessandro; Amoroso, Francesco

2013-01-01

Prune belly syndrome (PBS) is a rare congenital syndrome characterized by hypoplasia of the abdominal muscles, urinary tract malformations, and cryptorchidism in males. The estimated incidence is 1 in 35,000 to 50,000 live births. Chronic renal failure and end-stage renal disease (ESRD), due both to different degrees of renal hypoplasia or dysplasia and infectious complications, develops in 20-30% of patients who survive the neonatal period. No data are available on progression time to ESRD, owing to the variability of the phenotypic features of nephropathy. Nevertheless, PBS is primarily a pathology of pediatric interest as demonstrated, for example, by the reported average age at transplantation which usually does not exceed fifteen years of age. Therefore the need for renal replacement therapy (RRT) in adult patients with PBS is unusual. It is reasonable to suppose that the abdominal muscular defects may represent a limit for peritoneal dialysis (PD) utilization in PBS adult patients in many Kidney Units where, conversely, treatment with hemodialysis would be probably the easier choice. Here we describe the case of a 44 -year- old man with PBS who, at the age of 41, required RRT and was faced with the challenge of accepting PD. After more than three years of nocturnal automated peritoneal dialysis treatment we can safely say, as the following case illustrates, that PD is a feasible option in PBS adult patients.

Emprego da poda verde para a obtenção de duas safras por ciclo vegetativo em 'Niagara Branca' Green pruning to obtain two harvests by vegetative cicle on Niagara grapevine

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Paulo Vitor Dutra de Souza

2007-01-01

Full Text Available Avaliou-se o efeito de épocas de poda verde em dois anos consecutivos visando obter a segunda safra de uva em um mesmo ciclo vegetativo na cv. Niágara Branca (Vitis labrusca L., cultivada no sistema em espaldeira. O experimento foi realizado na Estação Experimental Agronômica da UFRGS, em Eldorado do Sul (RS, nas safras de 2003/2004 e 2004/2005. Os tratamentos constaram de três épocas de poda verde, realizadas imediatamente após a quarta folha acima do último cacho, e dois anos consecutivos de avaliação. Todas as plantas foram submetidas à superação de dormência mediante aplicação de cianamida hidrogenada a 2%. Analisou-se a duração dos estádios fenológicos, o período de maturação, a produção por planta, a massa fresca do cacho, o teor de sólidos solúveis totais e a acidez total titulável. Observou-se que a época de realização da poda verde não afetou a quantidade, nem a qualidade da uva produzida na primeira colheita, apenas atrasando-a em uma semana. A poda verde realizada no início de novembro possibilitou a segunda colheita de uva, realizada entre março e abril, sendo uma alternativa de ampliação do período de oferta do produto no mercado.The aim of this study was to evaluate the effects of green prunings on two consecutive years to obtain a second harvest of 'Niagara Branca' (Vitis labrusca grapevine in the same season. The experiment was carried out at Estação Experimental Agronômica of Universidade Federal do Rio Grande do Sul, located at Eldorado do Sul, State of Rio Grande do Sul, Brazil in 2003/2004 and 2004/2005 growth seasons. The grapevines were conducted by cordon training. The treatments involved three dates of green pruning, performed at fourth leaf situated above the last grape, and two seasons. All the plants were sprayed with hidrogenate cianamide (2% to overcome dormency. Fenology, plant production, weight of grapes, °Brix and titratable acid were evaluated. The green pruning time

Produção da figueira submetida a diferentes épocas de poda e irrigação The yield of fig trees as a function of pruning time and irrigation

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Sarita Leonel

2008-12-01

Full Text Available O trabalho teve como objetivo avaliar diferentes épocas de poda, correspondentes aos meses de julho, agosto, setembro e outubro dos anos de 2004/05 e 2005/06, com e sem o uso de irrigação, em figueira 'Roxo de Valinhos', no município de Botucatu-SP. Para atingir tal objetivo, adotou-se o delineamento experimental em parcelas subdivididas, com 5 repetições em blocos, onde as parcelas corresponderam aos tratamentos com e sem irrigação, e as subparcelas foram constituídas pelas podas realizadas nos quatro meses do ano. Foram avaliadas características de produção e alguns atributos de qualidade, que serviram para indicar a necessidade do uso de irrigação. Os resultados obtidos permitiram concluir que, na avaliação do desdobramento da interação entre épocas de poda e irrigação complementar, o mês de agosto, com o uso de irrigação complementar, foi o mais favorável para a realização da poda da figueira, proporcionando as maiores produções médias verificadas no ensaio, tanto no ciclo agrícola de 2004/05 (3.513,8 g planta-1, quanto em 2005/06 (4.110,7 g planta-1. Em condições não-irrigadas, não houve diferença estatística entre os meses de julho, agosto e setembro de 2004/05 e entre julho e agosto de 2005/06.The research had the purpose to determine the effects of pruning time in July, August, September and October of 2004/05 and 2005/06, with and without irrigation, in the fig trees 'Roxo de Valinhos', located in Botucatu/SP/Brazil. The experimental design was in split plots with 5 replications at random in lines, where the plots consisted in the treatments with and without irrigation and the subplots were composed of the pruning accomplished in the four months of the year. It was evaluated the yield and fruits quality. These characteristics could be used to evaluate the irrigation necessity. The August month with irrigation was the best time to the fig trees pruning, enhancing the yield (3.513,8 g plant-1 in 2004

Three cases of prune belly syndrome at the Lagos State University Teaching Hospital, Ikeja.

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Solarin, Adaobi U; Disu, Elizabeth A; Gbelee, Henry O; Animasahaun, Adeola B; Aremu, Oluwatosin E; Ogbuokiri, Eucharia; Ogunnaike, Gbemisola O; Oladimeji, Alaba

2018-01-01

Prune belly syndrome (PBS) is a rare congenital disorder affecting 2.5 to 3.8/100,000 live births worldwide. Our objective of this report is to describe clinical manifestation, laboratory, and radiological characteristics of PBS in our patients, to highlight the limitations to offering appropriate patient care due to parents demanding discharge against medical advice and the need to increase the awareness regarding this rare disease. We report three cases; all referred after birth with lax abdominal wall, congenital anomalies of kidney, and urinary tract. One of the patients had an absent right foot. They all had cryptorchidism, and in one, there was deranged renal function. The reported cases had both medical and radiological interventions to varying degrees. They all had an abdominal ultrasound which revealed varying degrees of hydronephrosis, hydroureters, and bladder changes. Voiding cystourethrogram showed vesicoureteric reflux in one of the reported cases. Urinary tract infections were appropriately treated with antibiotics based on sensitivity. PBS management in our setting remains a challenge because of strong cultural beliefs, and high rate of discharge against medical advice. Focus should be on parent education, early diagnosis, and multidisciplinary management approach.

Three cases of prune belly syndrome at the Lagos State University Teaching Hospital, Ikeja

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Adaobi U Solarin

2018-01-01

Full Text Available Prune belly syndrome (PBS is a rare congenital disorder affecting 2.5 to 3.8/100,000 live births worldwide. Our objective of this report is to describe clinical manifestation, laboratory, and radiological characteristics of PBS in our patients, to highlight the limitations to offering appropriate patient care due to parents demanding discharge against medical advice and the need to increase the awareness regarding this rare disease. We report three cases; all referred after birth with lax abdominal wall, congenital anomalies of kidney, and urinary tract. One of the patients had an absent right foot. They all had cryptorchidism, and in one, there was deranged renal function. The reported cases had both medical and radiological interventions to varying degrees. They all had an abdominal ultrasound which revealed varying degrees of hydronephrosis, hydroureters, and bladder changes. Voiding cystourethrogram showed vesicoureteric reflux in one of the reported cases. Urinary tract infections were appropriately treated with antibiotics based on sensitivity. PBS management in our setting remains a challenge because of strong cultural beliefs, and high rate of discharge against medical advice. Focus should be on parent education, early diagnosis, and multidisciplinary management approach.

Avaliação rebrota da copa das árvores de pau-rosa (Aniba rosaeodora Ducke em sistema de podas sucessivas Evaluation of resprouting of rosewood tree (Aniba rosaeodora Ducke crowns in sucessive prunings

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Paulo de Tarso B. Sampaio

2007-01-01

Full Text Available O estudo foi conduzido em um plantio de pau-rosa com 36 anos, localizado na Reserva Florestal Adolpho Ducke, Manaus-AM, Brasil, latitude 03º00' 00 "e 03º08'00" S e longitude 59º52'40 "e 59º58'00" W. Foi determinada a biomassa da rebrota da copa das árvores de pau-rosa (Aniba rosaeodora Ducke, Lauraceae, podadas duas vezes (em 2000 e 2002 e das árvores podadas três vezes (em 1987, 2000 e 20002. Os resultados não indicaram diferenças significativas entre o DAP, altura total, número de brotos/fuste, comprimento e diâmetro dos brotos e peso verde da copa das árvores podadas duas ou três vezes. Os coeficientes de regressão e de correlação de Pearson indicaram que a biomassa da copa das árvores podadas pela terceira vez está fortemente correlacionada com a radiação PAR direta, PAR difusa, PAR total e o índice de área foliar. O elevado número de brotos/fuste revelou boa capacidade da rebrota da copa após sucessivas podas, fato que possibilita o manejo da biomassa das árvores através de podas.This study was carried out in a rosewood plantation (36 years-old located in the Adolpho Ducke Forest Reserve, Manaus, Amazonas, Brazil, latitude 03º00' 00 " to 03º08'00" S and longitude 59º52'40 " to 59º58'00" W. The biomass of sprouts was determined from twice pruned (2000 and 2002 rosewood ( Aniba rosaeodora Ducke, Lauraceae tree crowns, and from those harvested three times (1987, 2000 and 2002. The results show that there are no significant differences in biomass productions between trees harvested two or tree times for the following parameters: DBH, total height, number of sprouts per bole, sprout length and diameter, and fresh canopy fresh weight. The regression and Pearson correlation coefficients showed that crown biomass from the third pruning was strongly correlated with direct PAR, diffuse PAR and total PAR and LAI (leaf area index. The high number of sprouts per bole reveals the crown's resprouting capacity after successive

Uso de poda verde, plásticos refletivos, antitranspirante e potássio na produção de pêssegos Using green pruning, reflective plastics, antitranspirant and potassium in peach production

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Renato Trevisan

2006-10-01

Full Text Available O objetivo deste trabalho foi avaliar técnicas que viabilizem a produção de pêssegos de melhor qualidade, ao potencializar características externas como a coloração vermelha na epiderme e o tamanho, bem como características químicas relativas ao sabor. Num pomar comercial de pessegueiros da cultivar Maciel, no Município de Pelotas, RS, foram avaliados os efeitos da poda verde, o uso de dois tipos de plástico refletivo sob a copa das plantas, diferentes concentrações de cloreto de potássio (KCl incorporado ao solo, com ou sem KCl via foliar e antitranspirante. O delineamento experimental utilizado foi o de blocos ao acaso. O uso de 1.200 g de KCl via solo, combinado com 10 g de KCl via foliar e poda verde, produziu coloração vermelha mais intensa na epiderme dos pêssegos. O uso de 1.600 g de KCl no solo, combinado com poda verde, produziu pêssegos com maior peso médio, maior diâmetro e baixa acidez titulável. A cobertura do solo, sob a copa das plantas, com plástico de ráfia, combinado com poda verde, resultou num maior teor de sólidos solúveis totais nos frutos. O uso dessas práticas culturais, realizadas na pré-colheita, influencia positivamente a qualidade final das frutas de pessegueiro da cultivar Maciel.The objective of this work was to evaluate techniques which make possible the production of peaches of high quality by improving external characteristics, percent of red cover color, fruit size, and chemical characteristics that influence flavor, in a field peach of cultivar Maciel, in Pelotas, RS, Brazil. Effects evaluated were: vegetative pruning, the use of two types of reflective plastics under the plant canopy, the different potassium chloride concentrations incorporated to the soil, with and without foliar aplication of KCl, and the use of antitranspirant. The experiment was carried out in a randomized block design. The results showed that the use of 1,200 g of KCl applied to soil, combined with 10 g of KCl

Ethanol and xylitol production by fermentation of acid hydrolysate from olive pruning with Candida tropicalis NBRC 0618.

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Mateo, Soledad; Puentes, Juan G; Moya, Alberto J; Sánchez, Sebastián

2015-08-01

Olive tree pruning biomass has been pretreated with pressurized steam, hydrolysed with hydrochloric acid, conditioned and afterwards fermented using the non-traditional yeast Candida tropicalis NBRC 0618. The main aim of this study was to analyse the influence of acid concentration on the hydrolysis process and its effect on the subsequent fermentation to produce ethanol and xylitol. From the results, it could be deduced that both total sugars and d-glucose recovery were enhanced by increasing the acid concentration tested; almost the whole hemicellulose fraction was hydrolysed when 3.77% was used. It has been observed a sequential production first of ethanol, from d-glucose, and then xylitol from d-xylose. The overall ethanol and xylitol yields ranged from 0.27 to 0.38kgkg(-1), and 0.12 to 0.23kgkg(-1) respectively, reaching the highest values in the fermentation of the hydrolysates obtained with hydrochloric acid 2.61% and 1.11%, respectively. Copyright © 2015 Elsevier Ltd. All rights reserved.

Steam explosion treatment for ethanol production from branches pruned from pear trees by simultaneous saccharification and fermentation.

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Sasaki, Chizuru; Okumura, Ryosuke; Asada, Chikako; Nakamura, Yoshitoshi

2014-01-01

This study investigated the production of ethanol from unutilized branches pruned from pear trees by steam explosion pretreatment. Steam pressures of 25, 35, and 45 atm were applied for 5 min, followed by enzymatic saccharification of the extracted residues with cellulase (Cellic CTec2). High glucose recoveries, of 93.3, 99.7, and 87.1%, of the total sugar derived from the cellulose were obtained from water- and methanol-extracted residues after steam explosion at 25, 35, and 45 tm, respectively. These values corresponded to 34.9, 34.3, and 27.1 g of glucose per 100 g of dry steam-exploded branches. Simultaneous saccharification and fermentation experiments were done on water-extracted residues and water- and methanol-extracted residues by Kluyveromyces marxianus NBRC 1777. An overall highest theoretical ethanol yield of 76% of the total sugar derived from cellulose was achieved when 100 g/L of water- and methanol-washed residues from 35 atm-exploded pear branches was used as substrate.

Nairobi sheep disease virus/Ganjam virus.

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M D, Baron; B, Holzer

2015-08-01

Nairobi sheep disease virus (NSDV) is a tick-borne virus which causes a severe disease in sheep and goats, and has been responsible for several outbreaks of disease in East Africa. The virus is also found in the Indian subcontinent, where it is known as Ganjam virus. The virus only spreads through the feeding of competent infected ticks, and is therefore limited in its geographic distribution by the distribution of those ticks, Rhipicephalus appendiculata in Africa and Haemaphysalis intermedia in India. Animals bred in endemic areas do not normally develop disease, and the impact is therefore primarily on animals being moved for trade or breeding purposes. The disease caused by NSDV has similarities to several other ruminant diseases, and laboratory diagnosis is necessary for confirmation. There are published methods for diagnosis based on polymerase chain reaction, for virus growth in cell culture and for other simple diagnostic tests, though none has been commercialised. There is no established vaccine against NSDV, although cell-culture attenuated strains have been developed which show promise and could be put into field trials if it were deemed necessary. The virus is closely related to Crimean-Congo haemorrhagic fever virus, and studies on NSDV may therefore be useful in understanding this important human pathogen.

Evaluation of genetic divergence among clones of conilon coffee after scheduled cycle pruning.

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Dalcomo, J M; Vieira, H D; Ferreira, A; Lima, W L; Ferrão, R G; Fonseca, A F A; Ferrão, M A G; Partelli, F L

2015-11-30

Coffea canephora genotypes from the breeding program of Instituto Capixaba de Pesquisa e Extensão Rural were evaluated, and genetic diversity was estimated with the aim of future improvement strategies. From an initial group of 55 genotypes, 18 from the region of Castelo, ES, were selected, and three clones of the cultivars "Vitória" and "robusta tropical." Upon completion of the scheduled cycle pruning, 17 morphoagronomic traits were measured in the 22 genotypes selected. The principal components method was used to evaluate the contributions relative to the traits. The genetic dissimilarity matrix was obtained through Mahalanobis generalized distance, and genotypes were grouped using the hierarchical method based on the mean of the distances. The most promising clones of Avaliação Castelo were AC02, AC03, AC12, AC13, AC22, AC24, AC26, AC27, AC28, AC29, AC30, AC35, AC36, AC37, AC39, AC40, AC43, and AC46. These methods detected high genetic variability, grouping, by similarity, the genotypes in five groups. The trait that contributed the least to genetic divergence was the number of leaves in plagiotropic branches; however, this was not eliminated, because discarding it altered the groups. There are superior genotypes with potential for use in the next stages of the breeding program, aimed at both the composition of clonal variety and hybridizations.

Urethral hydrodistension for management of urethral hypoplasia in prune belly syndrome: long-term results.

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Kajbafzadeh, Abdol-Mohammad; Rasouli, Mohammad Reza; Dianat, SeyedSaeid; Nezami, Behtash G; Mahboubi, Amir Hassan; Sina, Alireza

2010-11-01

The aim of the study was to evaluate the efficacy and safety of urethral hydrodistension for management of urethral hypoplasia in prune belly syndrome (PBS). During a 10-year period, 7 infants with PBS and urethral hypoplasia presented either with open urachus or surgically created urinary diversion referred to our hospital. Five milliliters of normal saline was pushed via a 22-gauge plastic angiocatheter into the urethra with simultaneous finger pressure on the perineum to occlude the proximal urethra that was repeated with higher volumes of the solution (up to 20 mL). The procedure was continued until a 6F or 8F feeding tube catheter confirmed the urethral patency. Hydrodistension was repeated in 3-month intervals till complete patency was confirmed by imaging. Median age of the infants was 6 (1-8) months. All urethral hydrodistension were successful after 1 to 3 sessions. Follow-up imaging studies showed significant improvement in all patients except one. Natural and surgically created urinary diversions were closed in 6 infants. The hydrodistension create an equal and constant pressure into the urethral wall without any urethral damage. This technique can be considered along with the other available methods for management of urethral hypoplasia in selected cases of PBS. Copyright © 2010 Elsevier Inc. All rights reserved.

Capacidad de recuperación de 23 accesiones de Leucaena spp. después de la poda Recovery capacity of 23 Leucaena spp. accessions after pruning

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Hilda B Wencomo

2011-03-01

Full Text Available Se evaluaron 23 accesiones de Leucaena spp. durante dos años, con el objetivo de conocer la variabilidad existente en la población en cuanto a la capacidad de recuperación después de la poda. Cuando las plantas sobrepasaban los 2 m, se realizó la poda de uniformidad a un 1 m de altura sobre el nivel del suelo. Las mediciones fueron: el grosor del tallo, el número de rebrotes y su longitud con una frecuencia semanal, a partir de lo cual se calculó la velocidad de crecimiento de cada accesión; además se determinó el rendimiento. El análisis de componentes principales, el de conglomerados y el de regresión lineal simple se realizaron a través del programa estadístico SPSS versión 11.5 para Microsoft Windows®. Se observó variabilidad en los indicadores evaluados (86,11% acumulado en la componente y todos contribuyeron a su explicación. A su vez, el análisis de conglomerados permitió la formación de tres grupos. Se concluye que todas las accesiones presentaron capacidad de recuperación después de la poda, con diferencias entre ellas. Las accesiones Leucaena leucocephala cv. Cunningham, cv. Perú, CIAT-9119, CIAT-9438, CIAT-751, CIAT-7988, CIAT-7384, CIAT-7929, CIAT-17480, cv. Ipil-Ipil y cv. CNIA-250; L. lanceolata CIAT-17255 y CIAT-17501 y L. diversifolia CIAT-17270 fueron las de mayor capacidad de recuperación. Por ello se recomienda, en futuras investigaciones relacionadas con la caracterización, evaluación y selección de estas especies, realizar estudios que incluyan su persistencia en el tiempo bajo condiciones de poda, así como su empleo en el fomento de nuevos sistemas silvopastoriles.Twenty three Leucaena spp. accessions were evaluated for two years, in order to know the variability existing in the population regarding the recovery capacity after pruning. When the plants were higher than 2 m, the uniformity pruning was made at 1 m above the soil level. The measurements were: stem diameter, number of regrowths and

Structural study of the bladder in fetuses with prune belly syndrome.

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Julio Junior, Helce R; Costa, Suelen F; Costa, Waldemar S; Barcellos Sampaio, Francisco J; Favorito, Luciano A

2018-01-01

To study the bladder structure of fetuses with prune belly syndrome (PBS). We studied three bladders obtained from three male fetuses with PBS and seven bladders from seven male fetuses without anomalies. Each bladder was dissected and embedded in paraffin, from which 5 μm thick sections were obtained and stained with Masson's trichrome (to quantify connective tissue and smooth muscle) and picrosirius red with polarization (to observe collagen). Immunohistochemistry with tubulin (Tubulin, beta III, Mouse Monoclonal Antibody) was applied to observe the bladder nerves. The images were captured with an Olympus BX51 microscope and Olympus DP70 camera. The stereological analysis was done with the Image Pro and Image J programs, using a grid to determine volumetric densities (Vv). Means were statistically compared using the Mann-Whitney test (P < 0.05). Quantitative analysis documented that smooth muscle fibers were significantly smaller (P = 0.04) in PBS fetuses (9.67% to 17.75%, mean = 13.2%) compared to control group (13.33% to 26.56%, mean = 17.43%). The analysis of collagen fibers showed predominance of green in the control group, suggesting collagen type III presence, and predominance of red in the in PBS fetal bladders, suggesting collagen type I presence in this group. The qualitative analysis of the nerves with immunohistochemistry with tubulin showed predominance of nerves in the control group. The bladder in PBS had lower concentrations of smooth muscle fibers, collagen type III, and nerves. These structural alterations can be one of the factors involved in urinary tract abnormality such as distended bladder in patients with PBS. © 2017 Wiley Periodicals, Inc.

Contemporary epidemiology and characterization of newborn males with prune belly syndrome.

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Routh, Jonathan C; Huang, Lin; Retik, Alan B; Nelson, Caleb P

2010-07-01

Prune belly syndrome (PBS) is a rare condition characterized by the congenital absence or deficiency of the abdominal wall musculature, with associated abnormalities of the genitourinary tract, including hydronephrosis and cryptorchidism. Few population-based epidemiology or mortality data are available. We retrospectively reviewed the Kids' Inpatient Database to evaluate PBS among newborn infants during their initial hospitalization in 2000, 2003, and 2006. The International Classification of Diseases, Ninth Revision, Clinical Modification codes were used to identify patients and to determine the comorbidity status. The PBS incidence, demographics, comorbid conditions, and disposition were assessed. A total of 133 newborn male infants diagnosed with PBS were identified of 1,420,991 live male births, for a weighted incidence estimate of 3.8 cases/100,000 live births. Of the newborns with PBS, 50% were white, 31% black, and 10% were Hispanic. In-hospital mortality was high (39 of 133, 29%). Of the 133 patients with PBS, 55 (41%) were discharged home and 39 (29%) required inpatient transfer or home nursing care. Fifty-seven patients (43%) were born premature; 56% of the PBS deaths occurred in premature infants. Mechanical ventilation was required in 64 newborns (48%), and 33 (24%) had coexisting congenital cardiovascular anomalies. Renal failure was uncommon, occurring in only 5 newborns (4%); none required dialysis. Only 13 patients (10%) underwent urinary diversion (vesicostomy or ureterostomy). The incidence of PBS was 3.8 cases/100,000 live births. Despite advances in care for children with PBS, this condition continues to be associated with high perinatal mortality, likely related to the associated prematurity and pulmonary complications. Renal failure was rare, as was immediate urinary diversion. Copyright 2010 Elsevier Inc. All rights reserved.

DIAGNOSTICS OF VIRUS PHYTOPATHOGENS FRUIT TREE PLUM POX VIRUS, PRUNUS NECROTIC RINGSPOT VIRUS AND PRUNUS DWARF VIRUS BY BIOLOGICAL AND MOLECULAR DIAGNOSTICS

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Július Rozák

2013-02-01

Full Text Available The aim of this study was to determine the incidence of viral phytopathogen Plum pox virus, Prunus necrotic ringspot virus and Prunus dwarf virus in selected localities of Slovakia and diagnose them using a molecular and biological methods. Forty samples of fruit trees of the genus Prunus, twenty samples from intensive plantings and twenty samples from wild subject were analysed. Biological diagnostic by using biological indicators Prunus persica cv. GF 305, Prunus serrulata cv. Schirofugen and molecular diagnostic by mRT-PCR were applied. Five samples with Plum pox virus were infected. The two samples positive for Prunus necrotic ringspot virus and one sample for Prunus dwarf virus were confirmed. The two samples were found to be infected with two viruses Prunus necrotic ringspot virus and Prunus dwarf virus. This work focuses on two techniques, their application to the diagnosis of stone fruit viruses and their routinely used for sanitary and certification programmes.

Oncogenic Viruses and Breast Cancer: Mouse Mammary Tumor Virus (MMTV, Bovine Leukemia Virus (BLV, Human Papilloma Virus (HPV, and Epstein–Barr Virus (EBV

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James S. Lawson

2018-01-01

Full Text Available BackgroundAlthough the risk factors for breast cancer are well established, namely female gender, early menarche and late menopause plus the protective influence of early pregnancy, the underlying causes of breast cancer remain unknown. The development of substantial recent evidence indicates that a handful of viruses may have a role in breast cancer. These viruses are mouse mammary tumor virus (MMTV, bovine leukemia virus (BLV, human papilloma viruses (HPVs, and Epstein–Barr virus (EBV-also known as human herpes virus type 4. Each of these viruses has documented oncogenic potential. The aim of this review is to inform the scientific and general community about this recent evidence.The evidenceMMTV and human breast cancer—the evidence is detailed and comprehensive but cannot be regarded as conclusive. BLV and human breast cancer—the evidence is limited. However, in view of the emerging information about BLV in human breast cancer, it is prudent to encourage the elimination of BLV in cattle, particularly in the dairy industry. HPVs and breast cancer—the evidence is substantial but not conclusive. The availability of effective preventive vaccines is a major advantage and their use should be encouraged. EBV and breast cancer—the evidence is also substantial but not conclusive. Currently, there are no practical means of either prevention or treatment. Although there is evidence of genetic predisposition, and cancer in general is a culmination of events, there is no evidence that inherited genetic traits are causal.ConclusionThe influence of oncogenic viruses is currently the major plausible hypothesis for a direct cause of human breast cancer.

Oncogenic Viruses and Breast Cancer: Mouse Mammary Tumor Virus (MMTV), Bovine Leukemia Virus (BLV), Human Papilloma Virus (HPV), and Epstein-Barr Virus (EBV).

Science.gov (United States)

Lawson, James S; Salmons, Brian; Glenn, Wendy K

2018-01-01

Although the risk factors for breast cancer are well established, namely female gender, early menarche and late menopause plus the protective influence of early pregnancy, the underlying causes of breast cancer remain unknown. The development of substantial recent evidence indicates that a handful of viruses may have a role in breast cancer. These viruses are mouse mammary tumor virus (MMTV), bovine leukemia virus (BLV), human papilloma viruses (HPVs), and Epstein-Barr virus (EBV-also known as human herpes virus type 4). Each of these viruses has documented oncogenic potential. The aim of this review is to inform the scientific and general community about this recent evidence. MMTV and human breast cancer-the evidence is detailed and comprehensive but cannot be regarded as conclusive. BLV and human breast cancer-the evidence is limited. However, in view of the emerging information about BLV in human breast cancer, it is prudent to encourage the elimination of BLV in cattle, particularly in the dairy industry. HPVs and breast cancer-the evidence is substantial but not conclusive. The availability of effective preventive vaccines is a major advantage and their use should be encouraged. EBV and breast cancer-the evidence is also substantial but not conclusive. Currently, there are no practical means of either prevention or treatment. Although there is evidence of genetic predisposition, and cancer in general is a culmination of events, there is no evidence that inherited genetic traits are causal. The influence of oncogenic viruses is currently the major plausible hypothesis for a direct cause of human breast cancer.

Caracterização fenológica e requerimento térmico para a videira niagara rosada em diferentes épocas de poda no sudoeste Goiano Phenological evaluation and thermal requirements for the grapevine 'niagara rosada' in diferent pruning times in southwest Goiás

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Solange Neis

2010-09-01

Full Text Available O experimento foi instalado no município de Aparecida do Rio Doce-GO, no sudoeste Goiano, durante os anos de 2007 e 2008, com o objetivo de avaliar o comportamento fenológico, bem como o requerimento térmico em diferentes épocas de poda: (1 09-07-07, (2 28-09-07, (3 03-03-08 e (4 19-04-08. Avaliou-se a duração, em dias, dos estádios fenológicos: poda até gemas inchadas; gemas inchadas (gema algodão a início de brotação (ponta verde; brotação a 5 - 6 folhas separadas; 5 - 6 folhas separadas ao início do florescimento; início do florescimento ao pleno florescimento, pleno florescimento a "chumbinho"; "chumbinho" a "ervilha"; "ervilha" a ½ baga; ½ baga à início da maturação e início da maturação até plena maturação. Os requerimentos térmicos foram obtidos em termos de graus-dia (GD necessários para atingir os seguintes subperíodos: poda a brotação, brotação a floração e floração a colheita. A duração do ciclo foi de 127; 130; 163 e 161 dias para as épocas de podas 1; 2; 3 e 4, respectivamente, sendo que, nas épocas 1 e 2, a colheita foi antecipada em 32 dias em relação às demais. Os períodos compreendidos entre início e final de maturação, ½ baga a início da maturação; "ervilha" a ½ baga apresentaram a maior duração nas 4 épocas de poda. O maior e o menor requerimento térmico, considerando temperaturas-base de 10 e 12 °C, foram registrados para as podas de julho (menor ciclo e de abril (segundo maior ciclo com 2.214,5 e 1.911,5 GD e 1.960,3 e 1.638,3 GD, respectivamente.The experiment was carried out at Aparecida do Rio Doce, located at the Southwestern part of Goias State, during the years of 2007 and 2008, aiming the characterization of the phenological stages and thermal requirements "Niagara Rosada" in different pruning times: (1 7/9/07, (2 9/28/07, (3 3/3/08 and (4 4/19/08. The number of days were evaluated for the following phenological phases: pruning times to bud swelling

Laparoscopic orchidopexy in boys with prune belly syndrome--outcome and technical considerations.

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Philip, Joe; Mullassery, Dhanya; Craigie, Ross J; Manikandan, Ramaswamy; Kenny, Simon E

2011-07-01

Cryptorchidism is an ubiquitous feature in prune belly syndrome (PBS). Laparoscopic orchidopexy allows dissection of the spermatic cord with minimal morbidity. We discuss the technical difficulties and outcome of three boys with PBS who underwent two-stage laparoscopic Fowler-Stephens orchidopexy (F-SO). Three boys, ages 1, 2, and 4, underwent laparoscopic F-SO. All boys had viable testes that were found within 3 cm of the deep inguinal ring. The testicular vessels were either ligated bilaterally with 4/0 polyglactin or monopolar diathermy was used and the vessels divided. Bilateral second-stage F-SO was performed within 6 months in two boys and limited to one side in the third boy. One boy awaits the contralateral second stage. All three boys have adequately sized gonads. Based on our experience, the port incisions should be smaller than routine practice to prevent air leak in PBS. Although the intra-abdominal pressure of 12 mm Hg did not vary from our normal practice, a high flow rate is necessary after initial insufflation (6 L/min) to compensate for inevitable gas leaks because the abdominal wall is so thin. Risk of diathermy injury to the thin abdominal wall and the vessels is significant. Laparoscopy enables easy visualization of the ureter, testes, and testicular vessels and permits complete dissection of testicular vessels. It is easier to maintain integrity of spermatic vessels. Use of radially expanding trocars, small incisions, and high gas flow rates permit this procedure to be performed safely with good outcome and cosmetic results in this challenging group of boys.

Evolutionary relationship of alfalfa mosaic virus with cucumber mosaic virus and brome mosaic virus

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Savithri, HS; Murthy, MRN

1983-01-01

The amino acid sequences of the non-structural protein (molecular weight 35,000; 3a protein) from three plant viruses - cucumber mosaic, brome mosaic and alfalfa mosaic have been systematically compared using the partial genomic sequences for these three viruses already available. The 3a protein of cucumber mosaic virus has an amino acid sequence homology of 33.7% with the corresponding protein of brome mosaic virus. A similar protein from alfalfa mosaic virus has a homology of 18.2% and 14.2...

Prune belly syndrome: early management outcome of nine consecutive cases.

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Ekwunife, O H; Ugwu, J O; Modekwe, V

2014-01-01

Prune belly syndrome (PBS) is a rare congenital malformation of unclear etiology. The disease progress and outcome in developing countries are not clear as most reports are isolated case reports. A review of 9 patients managed for PBS in 5 years. There were 7 males and 2 females, aged 30 min-11 days (median = 5 days) at the time of presentation (a child presented as neonate, defaulted from follow-up and represented at 10 years of life). Their weights on admission were 2.5-4.2 kg (median = 3 kg). Maternal age range was 26-37 years (median = 32 years), with five mothers being above 30 years. Seven mothers had febrile illness in the first trimester and took antimalarial drugs or antibiotics. Intestinal malrotation was the most common associated anomaly. The degree of the anterior abdominal wall and the urinary tract morphology varies from patient to patient. Urinary tract anomalies were initially managed conservatively. Two infants however later had cutaneous ureterostomy due to worsening renal function and recalcitrant urinary tract infection (UTI). Four infants had abdominoplasty at the 2 nd week, 6 th week, 3 rd year and 10 th year of life. Seven orchiopexies were done. Four were done by Fowler-Stephen's method while the rest were via the inguinal route. Of the former, 3 testicles have normal volume 6 months after, whereas one atrophied. Post abdominoplasty, there was a significant reduction in the frequency of respiratory tract infection (RTI), UTI and post void urine volume in three infants. In addition, there was improved peer interaction and academic performance in the 10-year-old child. One infant died of pulmonary hypoplasia and two others from worsening urosepsis and progressive renal failure. PBS presents with a spectrum of features. Initial conservative management of the urinary tract was beneficial. Abdominoplasty and orchiopexy have both physiological and improved quality of life benefits. Early Parental education helped in reducing defaults from follow-up.

Comparative analysis of chrysanthemum transcriptome in response to three RNA viruses: Cucumber mosaic virus, Tomato spotted wilt virus and Potato virus X.

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Choi, Hoseong; Jo, Yeonhwa; Lian, Sen; Jo, Kyoung-Min; Chu, Hyosub; Yoon, Ju-Yeon; Choi, Seung-Kook; Kim, Kook-Hyung; Cho, Won Kyong

2015-06-01

The chrysanthemum is one of popular flowers in the world and a host for several viruses. So far, molecular interaction studies between the chrysanthemum and viruses are limited. In this study, we carried out a transcriptome analysis of chrysanthemum in response to three different viruses including Cucumber mosaic virus (CMV), Tomato spotted wilt virus (TSWV) and Potato virus X (PVX). A chrysanthemum 135K microarray derived from expressed sequence tags was successfully applied for the expression profiles of the chrysanthemum at early stage of virus infection. Finally, we identified a total of 125, 70 and 124 differentially expressed genes (DEGs) for CMV, TSWV and PVX, respectively. Many DEGs were virus specific; however, 33 DEGs were commonly regulated by three viruses. Gene ontology (GO) enrichment analysis identified a total of 132 GO terms, and of them, six GO terms related stress response and MCM complex were commonly identified for three viruses. Several genes functioning in stress response such as chitin response and ethylene mediated signaling pathway were up-regulated indicating their involvement in establishment of host immune system. In particular, TSWV infection significantly down-regulated genes related to DNA metabolic process including DNA replication, chromatin organization, histone modification and cytokinesis, and they are mostly targeted to nucleosome and MCM complex. Taken together, our comparative transcriptome analysis revealed several genes related to hormone mediated viral stress response and DNA modification. The identified chrysanthemums genes could be good candidates for further functional study associated with resistant to various plant viruses.

Elective appendicovesicostomy in association with monfort abdominoplasty in the treatment of prune belly syndrome

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Riberto Liguori

2006-12-01

Full Text Available OBJECTIVE: To evaluate the role of elective appendicovesicostomy in association with Monfort abdominoplasty to avoid urinary tract infection (UTI and renal damage in the post-operative follow-up of patients with prune belly syndrome. MATERIALS AND METHODS: We followed 4 patients operated in our institution (UNIFESP (Monfort, orchidopexy and Mitrofanoff and compared them to 2 patients treated similarly, but without an appendicovesicostomy, in a second institution (UFBA. We evaluated postoperative clinical complications, UTI and preservation of renal parenchyma. Patients were followed as outpatients with urinalysis, ultrasonography (US and occasionally with renal scintigraphy. RESULTS: Mean follow-up was 23.5 months. Immediate post-operative course was uneventful. We observed that only one patient with the Mitrofanoff channel persisted with UTI, while the 2 patients used as controls persisted with recurrent pyelonephritis (> 2 UTI year. CONCLUSION: Our data suggest that no morbidity was added by the appendicovesicostomy to immediate postoperative surgical recovery and that this procedure may have a beneficial effect in reducing postoperative UTI events and their consequences by reducing the postvoid residuals in the early abdominoplasty follow-up. However, we recognize that the series is small and only a longer follow-up with a larger number of patients will allow us to confirm our suppositions. We could not make any statistically significant assumptions regarding differences in renal preservation due to the same limitations.

Time series modeling with pruned multi-layer perceptron and 2-stage damped least-squares method

International Nuclear Information System (INIS)

Voyant, Cyril; Tamas, Wani; Paoli, Christophe; Balu, Aurélia; Muselli, Marc; Nivet, Marie-Laure; Notton, Gilles

2014-01-01

A Multi-Layer Perceptron (MLP) defines a family of artificial neural networks often used in TS modeling and forecasting. Because of its ''black box'' aspect, many researchers refuse to use it. Moreover, the optimization (often based on the exhaustive approach where ''all'' configurations are tested) and learning phases of this artificial intelligence tool (often based on the Levenberg-Marquardt algorithm; LMA) are weaknesses of this approach (exhaustively and local minima). These two tasks must be repeated depending on the knowledge of each new problem studied, making the process, long, laborious and not systematically robust. In this paper a pruning process is proposed. This method allows, during the training phase, to carry out an inputs selecting method activating (or not) inter-nodes connections in order to verify if forecasting is improved. We propose to use iteratively the popular damped least-squares method to activate inputs and neurons. A first pass is applied to 10% of the learning sample to determine weights significantly different from 0 and delete other. Then a classical batch process based on LMA is used with the new MLP. The validation is done using 25 measured meteorological TS and cross-comparing the prediction results of the classical LMA and the 2-stage LMA

Row spacing and pruning regimes on organically grown cherry tomato Espaçamento e sistema de condução de tomate cereja em cultivo orgânico

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Vlamir F de Azevedo

2010-12-01

Full Text Available The effects of branch number and plant densities on organically grown cherry tomato yield and fruit quality were studied. Labor costs for pruning were also assessed. The essay was conducted at the experimental fields of the Universidade Federal Rural do Rio de Janeiro, Brazil, from September 2004 to January 2005. A factorial design was used combining three row spacings (0.4, 0.6 and 0.8 m, two cherry tomato cultivars (hybrid 'Super-Sweet' and a local self pollinated 'Perinha' and three pruning regimes (free growth, one branch per plant and two branches per plant. The row spacing treatment of 0.6 x 1.5 m resulted in lower number of fruits when compared to the 0.4 x 1.5 m treatment, however, producing fruits with higher individual average mass, which resulted in similar final yield. These yields were higher than the 0.8 m treatment. Yield increases due to the higher number of plants per area were mostly due to the increase of fruit number, which compensated for the decrease of fruit size and mass. The 'free growth' treatment yielded similarly to the two branches per plant treatment. The labor costs were lower under 'free growth' due to the absence of pruning. Both cultivars responded similarly to plant population and pruning regimes.Com o objetivo de se avaliar o efeito do manejo e da densidade de plantio na produtividade de frutos e no custo com mão de obra em sistema orgânico de produção de tomate cereja, foi realizado um experimento no Departamento de Fitotecnia da UFRRJ, Seropédica-RJ, de setembro de 2004 a janeiro de 2005. Foram avaliados os efeitos da combinação de três sistemas de condução (sem tutoramento e sem limitação do número de hastes por planta; tutoramento com condução de uma haste por planta e, tutoramento com condução de duas hastes por planta, três espaçamentos entre plantas (0,4; 0,6 e 0,8 m e duas cultivares de tomate cereja (Perinha Água Branca e Super Sweet. O tratamento com espaçamento de 0,6 x 1,5 m

Competitive virus assay method for titration of noncytopathogenic bovine viral diarrhea viruses (END⁺ and END⁻ viruses).

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Muhsen, Mahmod; Ohi, Kota; Aoki, Hiroshi; Ikeda, Hidetoshi; Fukusho, Akio

2013-03-01

A new, reliable and secure virus assay method, named the competitive virus assay (CVA) method, has been established for the titration of bovine viral diarrhea viruses (BVDVs) that either show the exaltation of Newcastle disease virus (END) phenomenon or heterologous interference phenomenon (but not the END phenomenon). This method is based on the principle of (1) homologous interference between BVDVs, by using BVDV RK13/E(-) or BVDV RK13/E(+) strains as competitor virus, and (2) END phenomenon and heterologous interference, by using attenuated Newcastle disease virus (NDV) TCND strain as challenge virus. In titration of BVDV END(+) and BVDV END(-) viruses, no significant difference in estimated virus titer was observed between CVA and conventional methods. CVA method demonstrated comparable levels of sensitivity and accuracy as conventional END and interference methods, which require the use of a velogenic Miyadera strain of NDV and vesicular stomatitis virus (VSV), both of which are agents of high-risk diseases. As such, the CVA method is a safer alternative, with increased bio-safety and bio-containment, through avoidance of virulent strains that are commonly employed with conventional methods. Copyright © 2012 Elsevier B.V. All rights reserved.

Virus wars: using one virus to block the spread of another

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Matthew L. Paff

2016-06-01

Full Text Available The failure of traditional interventions to block and cure HIV infections has led to novel proposals that involve treating infections with therapeutic viruses–infectious viruses that specifically inhibit HIV propagation in the host. Early efforts in evaluating these proposals have been limited chiefly to mathematical models of dynamics, for lack of suitable empirical systems. Here we propose, develop and analyze an empirical system of a therapeutic virus that protects a host cell population against a lethal virus. The empirical system uses E. coli bacteria as the host cell population, an RNA phage as the lethal virus and a filamentous phage as the therapeutic virus. Basic dynamic properties are established for each virus alone and then together. Observed dynamics broadly agree with those predicted by a computer simulation model, although some differences are noted. Two cases of dynamics are contrasted, differing in whether the therapeutic virus is introduced before the lethal virus or after the lethal virus. The therapeutic virus increases in both cases but by different mechanisms. With the therapeutic virus introduced first, it spreads infectiously without any appreciable change in host dynamics. With the therapeutic virus introduced second, host abundance is depressed at the time therapy is applied; following an initial period of therapeutic virus spread by infection, the subsequent rise of protection is through reproduction by hosts already protected. This latter outcome is due to inheritance of the therapeutic virus state when the protected cell divides. Overall, the work establishes the feasibility and robustness to details of a viral interference using a therapeutic virus.

Zika virus disease

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Adel I Al-Afaleq

2017-01-01

Full Text Available The Zika virus is an arbovirus belonging to the virus family Flaviviridae. The virus was isolated in 1947 from a rhesus monkey in the Zika Forest of Uganda. The virus causes sporadic mild human infections in Africa and later in Asia. However, by 2007 a major shift in its infection pattern was noticed and thousands of human infections were reported in the State of Yap and Federated States of Micronesia. In the last 3 years, major outbreaks have continued to occur and the virus has spread to several Pacific and American countries. These outbreaks were mostly asymptomatic; however, there were more severe clinical signs associated with the infections. Those signs included microcephaly and Guillain–Barre syndrome. It is believed that various species of mosquitoes can biologically transmit the virus. However, Aedes aegypti is most widely associated with the Zika virus. Recently, new modes of virus transmission have been reported, including mother-to-fetus, sexual, blood transfusion, animal bites, laboratory exposure and breast milk. Differential diagnosis is very important as some other arboviruses such as yellow fever virus, West Nile virus, dengue virus, and chikungunya virus have similar clinical manifestations to the Zika virus infection as well as relating serologically to some of these viruses. Established laboratory diagnostic tests to detect the Zika virus are limited, with reverse transcription polymerase chain reaction being the most widely used test. Taking into consideration the quickness of the spread of infection, size of the infected population and change of the infection severity pattern, the Zika virus infection merits collective efforts on all levels to prevent and control the disease. Limited research work and data, concurrent infection with other arboviruses, involvement of biological vectors, mass crowd events, human and trade movements and lack of vaccines are some of the challenges that we face in our efforts to prevent and

Dengue virus receptor

OpenAIRE

Hidari, Kazuya I.P.J.; Suzuki, Takashi

2011-01-01

Dengue virus is an arthropod-borne virus transmitted by Aedes mosquitoes. Dengue virus causes fever and hemorrhagic disorders in humans and non-human primates. Direct interaction of the virus introduced by a mosquito bite with host receptor molecule(s) is crucial for virus propagation and the pathological progression of dengue diseases. Therefore, elucidation of the molecular mechanisms underlying the interaction between dengue virus and its receptor(s) in both humans and mosquitoes is essent...

ECHO virus

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... page: //medlineplus.gov/ency/article/001340.htm ECHO virus To use the sharing features on this page, please enable JavaScript. Enteric cytopathic human orphan (ECHO) viruses are a group of viruses that can lead ...

Hepatitis E virus coinfection with hepatotropic viruses in Egyptian children.

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Zaki, Maysaa El Sayed; Salama, Osama Saad; Mansour, Fathy Awaad; Hossein, Shaimaa

2008-06-01

Major hepatotropic viruses continue to be important causes of acute viral hepatitis in developing countries. This work was carried out to detect the seroprevalence of hepatitis E virus (HEV) markers in children with acute viral hepatitis due to hepatotropic viruses (A, B and C) and non-A, non-B, non-C acute hepatitis, and to ascertain the influence of HEV superinfection in individuals infected with hepatitis viruses (A, B and C). We studied prospectively 162 children with sporadic acute hepatitis who reported to our hospital. Thirteen healthy controls were also included in the study. Laboratory investigations were performed, including complete liver function tests. Complete serological profiles for hepatitis viruses A, B, C and E were evaluated. HEV immunoglobulin G was detected with highest percentage among patients with hepatitis B (56.7%), followed by patients with hepatitis C virus (52.0%), hepatitis A virus (34.1%) and combined hepatitis B and C viruses (30.0%). The detection rate among patients with non-A, non-B, non-C hepatitis was 7.1%. HEV immunoglobulin M was found in 4.5% of hepatitis A virus patients and in 3.3% of hepatitis B patients. The prevalence of HEV immunoglobulin G and immunoglobulin M correlated with the levels of hepatic aspartate aminotransferase and alanine aminotransferase in patients with dual markers of infection with hepatitis E and other viruses compared to patients with acute hepatitis due to A and C viruses. HEV serological markers are common among children with acute viral hepatitis, especially from hepatitis C and B viruses. There may be increased sensitivity to HEV coinfection in association with hepatitis B and C infections. Dual infection with HEV and other hepatotropic viruses was associated with greater elevation of aspartate and alanine aminotransferases.

Phytophthora viruses.

Science.gov (United States)

Cai, Guohong; Hillman, Bradley I

2013-01-01

Phytophthora sp. is a genus in the oomycetes, which are similar to filamentous fungi in morphology and habitat, but phylogenetically more closely related to brown algae and diatoms and fall in the kingdom Stramenopila. In the past few years, several viruses have been characterized in Phytophthora species, including four viruses from Phytophthora infestans, the late blight pathogen, and an endornavirus from an unnamed Phytophthora species from Douglas fir. Studies on Phytophthora viruses have revealed several interesting systems. Phytophthora infestans RNA virus 1 (PiRV-1) and PiRV-2 are likely the first members of two new virus families; studies on PiRV-3 support the establishment of a new virus genus that is not affiliated with established virus families; PiRV-4 is a member of Narnaviridae, most likely in the genus Narnavirus; and Phytophthora endornavirus 1 (PEV1) was the first nonplant endornavirus at the time of reporting. Viral capsids have not been found in any of the above-mentioned viruses. PiRV-1 demonstrated a unique genome organization that requires further examination, and PiRV-2 may have played a role in late blight resurgence in 1980s-1990s. Copyright © 2013 Elsevier Inc. All rights reserved.

Viruses infecting reptiles.

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Marschang, Rachel E

2011-11-01

A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch's postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

Viruses Infecting Reptiles

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Rachel E. Marschang

2011-11-01

Full Text Available A large number of viruses have been described in many different reptiles. These viruses include arboviruses that primarily infect mammals or birds as well as viruses that are specific for reptiles. Interest in arboviruses infecting reptiles has mainly focused on the role reptiles may play in the epidemiology of these viruses, especially over winter. Interest in reptile specific viruses has concentrated on both their importance for reptile medicine as well as virus taxonomy and evolution. The impact of many viral infections on reptile health is not known. Koch’s postulates have only been fulfilled for a limited number of reptilian viruses. As diagnostic testing becomes more sensitive, multiple infections with various viruses and other infectious agents are also being detected. In most cases the interactions between these different agents are not known. This review provides an update on viruses described in reptiles, the animal species in which they have been detected, and what is known about their taxonomic positions.

Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

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Bin Zhou

2014-10-01

Full Text Available Bats harbor many viruses, which are periodically transmitted to humans resulting in outbreaks of disease (e.g., Ebola, SARS-CoV. Recently, influenza virus-like sequences were identified in bats; however, the viruses could not be cultured. This discovery aroused great interest in understanding the evolutionary history and pandemic potential of bat-influenza. Using synthetic genomics, we were unable to rescue the wild type bat virus, but could rescue a modified bat-influenza virus that had the HA and NA coding regions replaced with those of A/PR/8/1934 (H1N1. This modified bat-influenza virus replicated efficiently in vitro and in mice, resulting in severe disease. Additional studies using a bat-influenza virus that had the HA and NA of A/swine/Texas/4199-2/1998 (H3N2 showed that the PR8 HA and NA contributed to the pathogenicity in mice. Unlike other influenza viruses, engineering truncations hypothesized to reduce interferon antagonism into the NS1 protein didn't attenuate bat-influenza. In contrast, substitution of a putative virulence mutation from the bat-influenza PB2 significantly attenuated the virus in mice and introduction of a putative virulence mutation increased its pathogenicity. Mini-genome replication studies and virus reassortment experiments demonstrated that bat-influenza has very limited genetic and protein compatibility with Type A or Type B influenza viruses, yet it readily reassorts with another divergent bat-influenza virus, suggesting that the bat-influenza lineage may represent a new Genus/Species within the Orthomyxoviridae family. Collectively, our data indicate that the bat-influenza viruses recently identified are authentic viruses that pose little, if any, pandemic threat to humans; however, they provide new insights into the evolution and basic biology of influenza viruses.

Characterization of uncultivable bat influenza virus using a replicative synthetic virus.

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Zhou, Bin; Ma, Jingjiao; Liu, Qinfang; Bawa, Bhupinder; Wang, Wei; Shabman, Reed S; Duff, Michael; Lee, Jinhwa; Lang, Yuekun; Cao, Nan; Nagy, Abdou; Lin, Xudong; Stockwell, Timothy B; Richt, Juergen A; Wentworth, David E; Ma, Wenjun

2014-10-01

Bats harbor many viruses, which are periodically transmitted to humans resulting in outbreaks of disease (e.g., Ebola, SARS-CoV). Recently, influenza virus-like sequences were identified in bats; however, the viruses could not be cultured. This discovery aroused great interest in understanding the evolutionary history and pandemic potential of bat-influenza. Using synthetic genomics, we were unable to rescue the wild type bat virus, but could rescue a modified bat-influenza virus that had the HA and NA coding regions replaced with those of A/PR/8/1934 (H1N1). This modified bat-influenza virus replicated efficiently in vitro and in mice, resulting in severe disease. Additional studies using a bat-influenza virus that had the HA and NA of A/swine/Texas/4199-2/1998 (H3N2) showed that the PR8 HA and NA contributed to the pathogenicity in mice. Unlike other influenza viruses, engineering truncations hypothesized to reduce interferon antagonism into the NS1 protein didn't attenuate bat-influenza. In contrast, substitution of a putative virulence mutation from the bat-influenza PB2 significantly attenuated the virus in mice and introduction of a putative virulence mutation increased its pathogenicity. Mini-genome replication studies and virus reassortment experiments demonstrated that bat-influenza has very limited genetic and protein compatibility with Type A or Type B influenza viruses, yet it readily reassorts with another divergent bat-influenza virus, suggesting that the bat-influenza lineage may represent a new Genus/Species within the Orthomyxoviridae family. Collectively, our data indicate that the bat-influenza viruses recently identified are authentic viruses that pose little, if any, pandemic threat to humans; however, they provide new insights into the evolution and basic biology of influenza viruses.

Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.

Directory of Open Access Journals (Sweden)

Jakob H Havgaard

2007-10-01

Full Text Available It has become clear that noncoding RNAs (ncRNA play important roles in cells, and emerging studies indicate that there might be a large number of unknown ncRNAs in mammalian genomes. There exist computational methods that can be used to search for ncRNAs by comparing sequences from different genomes. One main problem with these methods is their computational complexity, and heuristics are therefore employed. Two heuristics are currently very popular: pre-folding and pre-aligning. However, these heuristics are not ideal, as pre-aligning is dependent on sequence similarity that may not be present and pre-folding ignores the comparative information. Here, pruning of the dynamical programming matrix is presented as an alternative novel heuristic constraint. All subalignments that do not exceed a length-dependent minimum score are discarded as the matrix is filled out, thus giving the advantage of providing the constraints dynamically. This has been included in a new implementation of the FOLDALIGN algorithm for pairwise local or global structural alignment of RNA sequences. It is shown that time and memory requirements are dramatically lowered while overall performance is maintained. Furthermore, a new divide and conquer method is introduced to limit the memory requirement during global alignment and backtrack of local alignment. All branch points in the computed RNA structure are found and used to divide the structure into smaller unbranched segments. Each segment is then realigned and backtracked in a normal fashion. Finally, the FOLDALIGN algorithm has also been updated with a better memory implementation and an improved energy model. With these improvements in the algorithm, the FOLDALIGN software package provides the molecular biologist with an efficient and user-friendly tool for searching for new ncRNAs. The software package is available for download at http://foldalign.ku.dk.

Prevalence of human immunodeficiency virus, hepatitis C virus ...

African Journals Online (AJOL)

Background. Human immunodeficiency virus (HIV), hepatitis B virus (HBV), hepatitis C virus (HCV) and syphilis remain major infections around the world. In Angola, about 166 000 individuals are living with HIV, representing a prevalence of 1.98% in adults between 15 and 49 years of age. In a 2003 study in Luanda, 4.5% ...

Epstein - Barr Virus

OpenAIRE

Štorkánová, Lenka

2011-01-01

Epstein-Barr virus Bachelor thesis summarizes the findings of Epstein-Barr virus (EBV), its general characteristics, transmission and spread of the virus, symptoms of disease and subsequent therapy and recovery. More specifically, it focuses on infectious mononucleosis, as well as more generally to other diseases, which the Epstein-Barr virus causes. It includes details of the vaccine against EB virus. There are the statistics on the incidence of infectious mononucleosis.

Emerging influenza viruses and the prospect of a universal influenza virus vaccine.

Science.gov (United States)

Krammer, Florian

2015-05-01

Influenza viruses cause annual seasonal epidemics and pandemics at irregular intervals. Several cases of human infections with avian and swine influenza viruses have been detected recently, warranting enhanced surveillance and the development of more effective countermeasures to address the pandemic potential of these viruses. The most effective countermeasure against influenza virus infection is the use of prophylactic vaccines. However, vaccines that are currently in use for seasonal influenza viruses have to be re-formulated and re-administered in a cumbersome process every year due to the antigenic drift of the virus. Furthermore, current seasonal vaccines are ineffective against novel pandemic strains. This paper reviews zoonotic influenza viruses with pandemic potential and technological advances towards better vaccines that induce broad and long lasting protection from influenza virus infection. Recent efforts have focused on the development of broadly protective/universal influenza virus vaccines that can provide immunity against drifted seasonal influenza virus strains but also against potential pandemic viruses. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Virus-host interaction in feline immunodeficiency virus (FIV) infection.

Science.gov (United States)

Taniwaki, Sueli Akemi; Figueiredo, Andreza Soriano; Araujo, João Pessoa

2013-12-01

Feline immunodeficiency virus (FIV) infection has been the focus of several studies because this virus exhibits genetic and pathogenic characteristics that are similar to those of the human immunodeficiency virus (HIV). FIV causes acquired immunodeficiency syndrome (AIDS) in cats, nevertheless, a large fraction of infected cats remain asymptomatic throughout life despite of persistent chronic infection. This slow disease progression may be due to the presence of factors that are involved in the natural resistance to infection and the immune response that is mounted by the animals, as well as due to the adaptation of the virus to the host. Therefore, the study of virus-host interaction is essential to the understanding of the different patterns of disease course and the virus persistence in the host, and to help with the development of effective vaccines and perhaps the cure of FIV and HIV infections. Copyright © 2013 Elsevier Ltd. All rights reserved.

Systematic analysis of protein identity between Zika virus and other arthropod-borne viruses.

Science.gov (United States)

Chang, Hsiao-Han; Huber, Roland G; Bond, Peter J; Grad, Yonatan H; Camerini, David; Maurer-Stroh, Sebastian; Lipsitch, Marc

2017-07-01

To analyse the proportions of protein identity between Zika virus and dengue, Japanese encephalitis, yellow fever, West Nile and chikungunya viruses as well as polymorphism between different Zika virus strains. We used published protein sequences for the Zika virus and obtained protein sequences for the other viruses from the National Center for Biotechnology Information (NCBI) protein database or the NCBI virus variation resource. We used BLASTP to find regions of identity between viruses. We quantified the identity between the Zika virus and each of the other viruses, as well as within-Zika virus polymorphism for all amino acid k -mers across the proteome, with k ranging from 6 to 100. We assessed accessibility of protein fragments by calculating the solvent accessible surface area for the envelope and nonstructural-1 (NS1) proteins. In total, we identified 294 Zika virus protein fragments with both low proportion of identity with other viruses and low levels of polymorphisms among Zika virus strains. The list includes protein fragments from all Zika virus proteins, except NS3. NS4A has the highest number (190 k -mers) of protein fragments on the list. We provide a candidate list of protein fragments that could be used when developing a sensitive and specific serological test to detect previous Zika virus infections.

Blueberry (Vaccinium corymbosum)-Virus Diseases

Science.gov (United States)

At least six viruses have been found in highbush blueberry plantings in the Pacific Northwest: Blueberry mosaic virus, Blueberry red ringspot virus, Blueberry scorch virus, Blueberry shock virus, Tobacco ringspot virus, and Tomato ringspot virus. Six other virus and virus-like diseases of highbush b...

Single virus genomics: a new tool for virus discovery.

Directory of Open Access Journals (Sweden)

Lisa Zeigler Allen

Full Text Available Whole genome amplification and sequencing of single microbial cells has significantly influenced genomics and microbial ecology by facilitating direct recovery of reference genome data. However, viral genomics continues to suffer due to difficulties related to the isolation and characterization of uncultivated viruses. We report here on a new approach called 'Single Virus Genomics', which enabled the isolation and complete genome sequencing of the first single virus particle. A mixed assemblage comprised of two known viruses; E. coli bacteriophages lambda and T4, were sorted using flow cytometric methods and subsequently immobilized in an agarose matrix. Genome amplification was then achieved in situ via multiple displacement amplification (MDA. The complete lambda phage genome was recovered with an average depth of coverage of approximately 437X. The isolation and genome sequencing of uncultivated viruses using Single Virus Genomics approaches will enable researchers to address questions about viral diversity, evolution, adaptation and ecology that were previously unattainable.

Resistance to Two Heterologous Neurotropic Oncolytic Viruses, Semliki Forest Virus and Vaccinia Virus, in Experimental Glioma

Science.gov (United States)

Le Boeuf, Fabrice; Lemay, Chantal; De Silva, Naomi; Diallo, Jean-Simon; Cox, Julie; Becker, Michelle; Choi, Youngmin; Ananth, Abhirami; Sellers, Clara; Breton, Sophie; Roy, Dominic; Falls, Theresa; Brun, Jan; Hemminki, Akseli; Hinkkanen, Ari; Bell, John C.

2013-01-01

Attenuated Semliki Forest virus (SFV) may be suitable for targeting malignant glioma due to its natural neurotropism, but its replication in brain tumor cells may be restricted by innate antiviral defenses. We attempted to facilitate SFV replication in glioma cells by combining it with vaccinia virus, which is capable of antagonizing such defenses. Surprisingly, we found parenchymal mouse brain tumors to be refractory to both viruses. Also, vaccinia virus appears to be sensitive to SFV-induced antiviral interference. PMID:23221568

Detection of sweet potato virus C, sweet potato virus 2 and sweet potato feathery mottle virus in Portugal.

Science.gov (United States)

Varanda, Carla M R; Santos, Susana J; Oliveira, Mônica D M; Clara, Maria Ivone E; Félix, Maria Rosário F

2015-06-01

Field sweet potato plants showing virus-like symptoms, as stunting, leaf distortion, mosaic and chlorosis, were collected in southwest Portugal and tested for the presence of four potyviruses, sweet potato virus C (SPVC), sweet potato virus 2 (SPV2), sweet potato feathery mottle virus (SPFMV), sweet potato virus G (SPVG), and the crinivirus sweet potato chlorotic stunt virus (SPCSV). DsRNA fractions were extracted from symptomatic leaves and used as templates in single and multiplex RT-PCR assays using previously described specific primers for each analyzed virus. The amplified reaction products for SPVC, SPV2 and SPFMV were of expected size, and direct sequencing of PCR products revealed that they correspond to the coat protein gene (CP) and showed 98%, 99% and 99% identity, respectively, to those viruses. Comparison of the CP genomic and amino acid sequences of the Portuguese viral isolates recovered here with those of ten other sequences of isolates obtained in different countries retrieved from the GenBank showed very few differences. The application of the RT-PCR assays revealed for the first time the presence of SPVC and SPFMV in the sweet potato crop in Portugal, the absence of SPVG and SPCSV in tested plants, as well as the occurrence of triple virus infections under field conditions.

Hepatitis E virus and fulminant hepatitis--a virus or host-specific pathology?

Science.gov (United States)

Smith, Donald B; Simmonds, Peter

2015-04-01

Fulminant hepatitis is a rare outcome of infection with hepatitis E virus. Several recent reports suggest that virus variation is an important determinant of disease progression. To critically examine the evidence that virus-specific factors underlie the development of fulminant hepatitis following hepatitis E virus infection. Published sequence information of hepatitis E virus isolates from patients with and without fulminant hepatitis was collected and analysed using statistical tests to identify associations between virus polymorphisms and disease outcome. Fulminant hepatitis has been reported following infection with all four hepatitis E virus genotypes that infect humans comprising multiple phylogenetic lineages within genotypes 1, 3 and 4. Analysis of virus sequences from individuals infected by a common source did not detect any common substitutions associated with progression to fulminant hepatitis. Re-analysis of previously reported associations between virus substitutions and fulminant hepatitis suggests that these were probably the result of sampling biases. Host-specific factors rather than virus genotype, variants or specific substitutions appear to be responsible for the development of fulminant hepatitis. © 2014 The Authors. Liver International Published by John Wiley & Sons Ltd.

Circulating avian influenza viruses closely related to the 1918 virus have pandemic potential

Science.gov (United States)

Watanabe, Tokiko; Zhong, Gongxun; Russell, Colin A.; Nakajima, Noriko; Hatta, Masato; Hanson, Anthony; McBride, Ryan; Burke, David F.; Takahashi, Kenta; Fukuyama, Satoshi; Tomita, Yuriko; Maher, Eileen A.; Watanabe, Shinji; Imai, Masaki; Neumann, Gabriele; Hasegawa, Hideki; Paulson, James C.; Smith, Derek J.; Kawaoka, Yoshihiro

2014-01-01

Summary Wild birds harbor a large gene pool of influenza A viruses that have the potential to cause influenza pandemics. Foreseeing and understanding this potential is important for effective surveillance. Our phylogenetic and geographic analyses revealed the global prevalence of avian influenza virus genes whose proteins differ only a few amino acids from the 1918 pandemic influenza virus, suggesting that 1918-like pandemic viruses may emerge in the future. To assess this risk, we generated and characterized a virus composed of avian influenza viral segments with high homology to the 1918 virus. This virus exhibited higher pathogenicity in mice and ferrets than an authentic avian influenza virus. Further, acquisition of seven amino acid substitutions in the viral polymerases and the hemagglutinin surface glycoprotein conferred respiratory droplet transmission to the 1918-like avian virus in ferrets, demonstrating that contemporary avian influenza viruses with 1918 virus-like proteins may have pandemic potential. PMID:24922572

Lack of Durable Cross-Neutralizing Antibodies Against Zika Virus from Dengue Virus Infection.

Science.gov (United States)

Collins, Matthew H; McGowan, Eileen; Jadi, Ramesh; Young, Ellen; Lopez, Cesar A; Baric, Ralph S; Lazear, Helen M; de Silva, Aravinda M

2017-05-01

Cross-reactive antibodies elicited by dengue virus (DENV) infection might affect Zika virus infection and confound serologic tests. Recent data demonstrate neutralization of Zika virus by monoclonal antibodies or human serum collected early after DENV infection. Whether this finding is true in late DENV convalescence (>6 months after infection) is unknown. We studied late convalescent serum samples from persons with prior DENV or Zika virus exposure. Despite extensive cross-reactivity in IgG binding, Zika virus neutralization was not observed among primary DENV infections. We observed low-frequency (23%) Zika virus cross-neutralization in repeat DENV infections. DENV-immune persons who had Zika virus as a secondary infection had distinct populations of antibodies that neutralized DENVs and Zika virus, as shown by DENV-reactive antibody depletion experiments. These data suggest that most DENV infections do not induce durable, high-level Zika virus cross-neutralizing antibodies. Zika virus-specific antibody populations develop after Zika virus infection irrespective of prior DENV immunity.

Ganjam virus.

Science.gov (United States)

Sudeep, A B; Jadi, R S; Mishra, A C

2009-11-01

Ganjam virus (GANV), a member of genus Nairovirus of family Bunyavirdae is of considerable veterinary importance in India. Though, predominantly tick borne, GANV was also isolated from mosquitoes, man and sheep. Neutralizing and complement fixing antibodies to GANV have been detected in animal and human sera collected from different parts of the country. Thirty three strains of GANV have been isolated from India, mainly from Haemaphysalis ticks. The virus replicated in certain vertebrate and mosquito cell lines and found pathogenic to laboratory animals. One natural infection and five laboratory-acquired infections in men were also reported. GANV is antigenically related to Nairobi sheep disease virus (NSDV) of Africa, which is highly pathogenic for sheep and goats causing 70-90 per cent mortality among the susceptible population. Recent molecular studies have demonstrated that GANV is an Asian variant of NSDV and both these viruses are related to the dreaded Crimean Congo haemorrhagic fever (CCHF) group viruses. The versatility of the virus to replicate in different arthropod species, its ability to infect sheep, goat and man makes it an important zoonotic agent.

The Drosophila Nora virus is an enteric virus, transmitted via feces.

Science.gov (United States)

Habayeb, Mazen S; Cantera, Rafael; Casanova, Gabriela; Ekström, Jens-Ola; Albright, Shannon; Hultmark, Dan

2009-04-01

The biology of the Drosophila viruses has not been intensely investigated. Here we have investigated the biology of the Nora virus, a persistent Drosophila virus. We find that injected Nora virus is able to replicate in the files, reaching a high titer that is maintained in the next generation. There is a remarkable variation in the viral loads of individual flies in persistently infected stocks; the titers can differ by three orders of magnitude. The Nora virus is mainly found in the intestine of infected flies, and the histology of these infected intestines show increased vacuolization. The virus is excreted in the feces and is horizontally transmitted. The Nora virus infection has a very mild effect on the longevity of the flies, and no significant effect on the number of eggs laid and the percent of eggs that develop to adults.

Herpes viruses and human papilloma virus in nasal polyposis and controls

Directory of Open Access Journals (Sweden)

Dimitrios Ioannidis

2015-12-01

Full Text Available ABSTRACT INTRODUCTION: Chronic rhinosinusitis with nasal polyps is a multifactorial disease entity with an unclear pathogenesis. Contradictory data exist in the literature on the potential implication of viral elements in adult patients with chronic rhinosinusitis. OBJECTIVE: To compare the prevalence of human herpes viruses (1-6 and Human Papilloma Virus in adult patients with chronic rhinosinusitis with nasal polyps and healthy controls. METHODS: Viral DNA presence was evaluated by real-time polymerase chain reaction application to nasal polyps specimens from 91 chronic rhinosinusitis with nasal polyps patients and nasal turbinate mucosa from 38 healthy controls. RESULTS: Epstein-Barr virus positivity was higher in nasal polyps (24/91; 26.4% versus controls (4/38; 10.5%, but the difference did not reach significance (p = 0.06. Human herpes virus-6 positivity was lower in nasal polyps (13/91; 14.29% versus controls (10/38; 26.32%,p = 0.13. In chronic rhinosinusitis with nasal polyps group, 1 sample was herpes simplex virus-1-positive (1/91; 1.1%, and another was cytomegalovirus-positive (1/91; 1.1%, versus none in controls. No sample was positive for herpes simplex virus-2, varicella-zoster virus, high-risk-human papilloma viruses (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59 and low-risk-human papilloma viruses (6, 11. CONCLUSION: Differences in Epstein-Barr virus and human herpes virus-6 positivity among patients with chronic rhinosinusitis with nasal polyps and healthy controls are not statistically significant, weakening the likelihood of their implication in chronic rhinosinusitis with nasal polyps pathogenesis.

Evaluation of recombinant influenza virus-simian immunodeficiency virus vaccines in macaques.

Science.gov (United States)

Sexton, Amy; De Rose, Robert; Reece, Jeanette C; Alcantara, Sheilajen; Loh, Liyen; Moffat, Jessica M; Laurie, Karen; Hurt, Aeron; Doherty, Peter C; Turner, Stephen J; Kent, Stephen J; Stambas, John

2009-08-01

There is an urgent need for human immunodeficiency virus (HIV) vaccines that induce robust mucosal immunity. Influenza A viruses (both H1N1 and H3N2) were engineered to express simian immunodeficiency virus (SIV) CD8 T-cell epitopes and evaluated following administration to the respiratory tracts of 11 pigtail macaques. Influenza virus was readily detected from respiratory tract secretions, although the infections were asymptomatic. Animals seroconverted to influenza virus and generated CD8 and CD4 T-cell responses to influenza virus proteins. SIV-specific CD8 T-cell responses bearing the mucosal homing marker beta7 integrin were induced by vaccination of naïve animals. Further, SIV-specific CD8 T-cell responses could be boosted by recombinant influenza virus-SIV vaccination of animals with already-established SIV infection. Sequential vaccination with influenza virus-SIV recombinants of different subtypes (H1N1 followed by H3N2 or vice versa) produced only a limited boost in immunity, probably reflecting T-cell immunity to conserved internal proteins of influenza A virus. SIV challenge of macaques vaccinated with an influenza virus expressing a single SIV CD8 T cell resulted in a large anamnestic recall CD8 T-cell response, but immune escape rapidly ensued and there was no impact on chronic SIV viremia. Although our results suggest that influenza virus-HIV vaccines hold promise for the induction of mucosal immunity to HIV, broader antigen cover will be needed to limit cytotoxic T-lymphocyte escape.

Schmallenberg virus – et nyt virus hos drøvtyggere

DEFF Research Database (Denmark)

Lohse, Louise

undersøgelser på laboratoriet, blev alle prøver i en længere periode testet negative for kendte patogener, der evt. kunne tænkes at knytte sig til disse sygdomsudbrud. Efterfølgende fandt man ved sekvensanalyse på DNA/RNA oprenset fra prøvematerialet lighed med virus fra orthobunyavirusgruppen. Disse virus er...... normalt vektorbårne og er kendt som årsag til sygdom i drøvtyggere i Australien, Asien, Afrika og Mellemøsten. Det nye virus blev kaldt Schmallenberg virus (SBV) efter stedet hvor det første tilfælde blev påvist. Siden har Schmallenberg virus spredt sig og er nu påvist i får, kvæg og geder i Tyskland......, Holland, Belgien, Luxembourg, Frankrig, Spanien, Italien og Storbritannien (status april 2012). Det antages, at virus overføres med mitter og myg og inkubationstiden har fra eksperimentelle forsøg vist sig at være kort (1-4 dage). Virus cirkulerer få dage i blodet og manifesterer sig ved milde uspecifikke...

Poda apical, densidade de plantas e cobertura plástica do solo na produtividade do tomateiro em cultivo protegido Tip pruning, plant density and plastic mulching in tomato yield in protected cultivation

Directory of Open Access Journals (Sweden)

Júlio César Bogiani

2008-01-01

Full Text Available O objetivo deste trabalho foi o de avaliar o efeito de duas combinações entre densidade de plantas e altura de poda apical, associados à utilização de cobertura plástica do solo, sobre o desenvolvimento e a produção de frutos do tomateiro, híbrido Duradoro (EMBRAPA, em ambiente protegido. Foram estabelecidos dois sistemas de cultivo com haste única: SC1 - poda apical após a 5ª inflorescência, com 20.000 plantas ha-1 e SC2 - poda apical após a 2ª inflorescência com 50.000 plantas ha-1; e três condições de cobertura do solo: solo nu; filme de polietileno branco e filme de polietileno preto, adotando-se o delineamento em blocos ao acaso, em esquema de parcelas subdivididas. O experimento foi desenvolvido de junho a novembro de 2003, na UNESP, Câmpus de Ilha Solteira. A adoção do tratamento SC2 determinou maior altura de plantas aos 45 dias após o transplante, maior número de frutos por área e maior produtividade, além da concentração do período de colheita em sete semanas. As coberturas plásticas do solo não influenciaram as variáveis que compõem a produtividade do tomateiro.The aim of this work was to evaluate the effect of two combinations between plant density and tip pruning height, associated to the use of plastic mulching, on plants development and fruit yield of the tomato (Duradoro hybrid grown under protected environment. Two single stem cultivation systems were compared: SC1 - tip pruning after the fifth inflorescence with 20,000 plants ha-1; SC2 - tip pruning after the second inflorescence with 50,000 plants ha-1, and three different soil cover conditions: bare soil, white polyethylene film, 50 mm-thick, and black polyethylene film, 50 mm-thick. The experimental design used was randomized block, in a split plot array. The work was carried out from June to November of 2003, at the UNESP, Ilha Solteira (São Paulo State, Brazil. The treatment SC2 increased plant height at 45 days after the transplant, and

Sensitive radioimmunosorbent assay for the detection of plant viruses. [Cauliflower mosaic virus, lettuce mosaic virus

Energy Technology Data Exchange (ETDEWEB)

Ghabrial, S A; Shepherd, R J [Kentucky Univ., Lexington (USA); California Univ., Davis (USA))

1980-06-01

A simple and highly sensitive radioimmunosorbent assay (RISA) for the detection of plant viruses is described. The RISA procedure is a microplate method based on the principle of 'double-antibody sandwich' and follows essentially the protocol of the enzyme-linked immunosorbent assay (ELISA) (Clark and Adams, 1977), with the exception that /sup 125/I-labelled ..gamma..-globulin is substituted for the ..gamma..-globulin enzyme conjugate; the bound /sup 125/I-..gamma..-globulin is dissociated by acidification from the double-antibody sandwich. The radioactivity is proportional to virus concentration, and cauliflower mosaic virus (CaMV) and lettuce mosaic virus (LMV) could be detected at concentrations as low as 5 and 2 ng/ml, respectively. Direct evidence of the adverse effects of conjugation with enzyme on the binding abilities of antibodies is presented. The RISA procedure should prove valuable with viruses for which the ELISA values are too low to be dependable.

Release of Virus from Lymphoid Tissue Affects Human Immunodeficiency Virus Type 1 and Hepatitis C Virus Kinetics in the Blood

NARCIS (Netherlands)

Müller, Viktor; Marée, Athanasius F.M.; Boer, R.J. de

2000-01-01

Kinetic parameters of human immunodeficiency virus type 1 (HIV-1) and hepatitis C virus (HCV) infections have been estimated from plasma virus levels following perturbation of the chronically infected (quasi-) steady state. We extend previous models by also considering the large pool of virus

Hepatitis E Virus and Related Viruses in Animals.

Science.gov (United States)

Thiry, D; Mauroy, A; Pavio, N; Purdy, M A; Rose, N; Thiry, E; de Oliveira-Filho, E F

2017-02-01

Hepatitis E is an acute human liver disease in healthy individuals which may eventually become chronic. It is caused by the hepatitis E virus (HEV) and can have a zoonotic origin. Nearly 57,000 people die yearly from hepatitis E-related conditions. The disease is endemic in both developing and developed countries with distinct epidemiologic profiles. In developing countries, the disease is associated with inadequate water treatment, while in developed countries, transmission is associated with animal contact and the ingestion of raw or uncooked meat, especially liver. All human HEV are grouped into at least four genotypes, while HEV or HEV-related viruses have been identified in an increasing number of domestic and wild animal species. Despite a high genetic diversity, only one single HEV serotype has been described to date for HEV genotypes 1-4. The discovery of new HEV or HEV-related viruses leads to a continuing increase in the number of genotypes. In addition, the genome organization of all these viruses is variable with overlapping open reading frames (ORF) and differences in the location of ORF3. In spite of the role of some domestic and wild animals as reservoir, the origin of HEV and HEV-related viruses in humans and animals is still unclear. This review discusses aspects of the detection, molecular virology, zoonotic transmission and origin of HEV and HEV-related viruses in the context of 'One Health' and establishes a link between the previous and the new taxonomy of this growing virus family. © 2015 Blackwell Verlag GmbH.

"The evil virus cell": Students' knowledge and beliefs about viruses.

Science.gov (United States)

Simon, Uwe K; Enzinger, Sonja M; Fink, Andreas

2017-01-01

Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients

Herpes viruses and human papilloma virus in nasal polyposis and controls.

Science.gov (United States)

Ioannidis, Dimitrios; Lachanas, Vasileios A; Florou, Zoe; Bizakis, John G; Petinaki, Efthymia; Skoulakis, Charalampos E

2015-01-01

Chronic rhinosinusitis with nasal polyps is a multifactorial disease entity with an unclear pathogenesis. Contradictory data exist in the literature on the potential implication of viral elements in adult patients with chronic rhinosinusitis. To compare the prevalence of human herpes viruses (1-6) and Human Papilloma Virus in adult patients with chronic rhinosinusitis with nasal polyps and healthy controls. Viral DNA presence was evaluated by real-time polymerase chain reaction application to nasal polyps specimens from 91 chronic rhinosinusitis with nasal polyps patients and nasal turbinate mucosa from 38 healthy controls. Epstein-Barr virus positivity was higher in nasal polyps (24/91; 26.4%) versus controls (4/38; 10.5%), but the difference did not reach significance (p=0.06). Human herpes virus-6 positivity was lower in nasal polyps (13/91; 14.29%) versus controls (10/38; 26.32%, p=0.13). In chronic rhinosinusitis with nasal polyps group, 1 sample was herpes simplex virus-1-positive (1/91; 1.1%), and another was cytomegalovirus-positive (1/91; 1.1%), versus none in controls. No sample was positive for herpes simplex virus-2, varicella-zoster virus, high-risk-human papilloma viruses (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59) and low-risk-human papilloma viruses (6, 11). Differences in Epstein-Barr virus and human herpes virus-6 positivity among patients with chronic rhinosinusitis with nasal polyps and healthy controls are not statistically significant, weakening the likelihood of their implication in chronic rhinosinusitis with nasal polyps pathogenesis. Copyright © 2015 Associação Brasileira de Otorrinolaringologia e Cirurgia Cérvico-Facial. Published by Elsevier Editora Ltda. All rights reserved.

Computer Virus and Trends

OpenAIRE

Tutut Handayani; Soenarto Usna,Drs.MMSI

2004-01-01

Since its appearance the first time in the mid-1980s, computer virus has invited various controversies that still lasts to this day. Along with the development of computer systems technology, viruses komputerpun find new ways to spread itself through a variety of existing communications media. This paper discusses about some things related to computer viruses, namely: the definition and history of computer viruses; the basics of computer viruses; state of computer viruses at this time; and ...

Viruses in reptiles

Directory of Open Access Journals (Sweden)

Ariel Ellen

2011-09-01

Full Text Available Abstract The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself. 1. Introduction 2. Methods for working with reptilian viruses 3. Reptilian viruses described by virus families 3.1. Herpesviridae 3.2. Iridoviridae 3.2.1 Ranavirus 3.2.2 Erythrocytic virus 3.2.3 Iridovirus 3.3. Poxviridae 3.4. Adenoviridae 3.5. Papillomaviridae 3.6. Parvoviridae 3.7. Reoviridae 3.8. Retroviridae and inclusion body disease of Boid snakes 3.9. Arboviruses 3.9.1. Flaviviridae 3

Genomic characterisation of Almpiwar virus, Harrison Dam virus and Walkabout Creek virus; three novel rhabdoviruses from northern Australia

Directory of Open Access Journals (Sweden)

Jane McAllister

2014-09-01

Full Text Available Rhabdoviridae represent a diverse group of viruses with the potential to cause disease in humans, animals and plants. Currently there are nine genera in the family; however a large number of rhabdoviruses remain unassigned. Here we characterise three novel rhabdoviruses genomes. Almpiwar virus (ALMV, isolated from skinks in northern Queensland, is the first completely sequenced rhabdovirus from squamates, with serological studies indicating multiple animal host species. Harrison Dam virus (HARDV and Walkabout Creek virus (WACV were isolated from mosquitoes in the Northern Territory and biting midges in southern Queensland respectively and their vertebrate hosts remain unknown. Serological cross-neutralisation tests with other Australian rhabdoviruses indicate that ALMV, WACV and HARDV are distinct viruses with little antigenic cross-reactivity. Next-generation sequencing revealed that all viruses encode the core proteins common to rhabdoviruses (N, P, M, G and L, plus additional ORFs between the M and G genes. HARDV also contains a small ORF between the G and L genes. Phylogenetic analysis of N and L proteins suggests that HARDV and WACV share a common lineage with the tupaviruses and Sandjimba group, whereas ALMV is a distinct and divergent virus showing no clear relationship to any rhabdovirus except the recently characterised Niahka virus (NIAV.

Demographic and clinical predictors of mortality from highly pathogenic avian influenza A (H5N1 virus infection: CART analysis of international cases.

Directory of Open Access Journals (Sweden)

Rita B Patel

Full Text Available Human infections with highly pathogenic avian influenza (HPAI A (H5N1 viruses have occurred in 15 countries, with high mortality to date. Determining risk factors for morbidity and mortality from HPAI H5N1 can inform preventive and therapeutic interventions.We included all cases of human HPAI H5N1 reported in World Health Organization Global Alert and Response updates and those identified through a systematic search of multiple databases (PubMed, Scopus, and Google Scholar, including articles in all languages. We abstracted predefined clinical and demographic predictors and mortality and used bivariate logistic regression analyses to examine the relationship of each candidate predictor with mortality. We developed and pruned a decision tree using nonparametric Classification and Regression Tree methods to create risk strata for mortality.We identified 617 human cases of HPAI H5N1 occurring between December 1997 and April 2013. The median age of subjects was 18 years (interquartile range 6-29 years and 54% were female. HPAI H5N1 case-fatality proportion was 59%. The final decision tree for mortality included age, country, per capita government health expenditure, and delay from symptom onset to hospitalization, with an area under the receiver operator characteristic (ROC curve of 0.81 (95% CI: 0.76-0.86.A model defined by four clinical and demographic predictors successfully estimated the probability of mortality from HPAI H5N1 illness. These parameters highlight the importance of early diagnosis and treatment and may enable early, targeted pharmaceutical therapy and supportive care for symptomatic patients with HPAI H5N1 virus infection.

Powassan (POW) Virus Basics

Science.gov (United States)

... Health Professionals Related Topics For International Travelers Powassan Virus Disease Basics Download this fact sheet formatted for ... Virus Disease Fact Sheet (PDF) What is Powassan virus? Powassan virus is a tickborne flavivirus that is ...

Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

Energy Technology Data Exchange (ETDEWEB)

Burles, Kristin; Irwin, Chad R.; Burton, Robyn-Lee [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada); Schriewer, Jill [Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, MO (United States); Evans, David H. [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada); Buller, R. Mark [Department of Molecular Microbiology and Immunology, Saint Louis University School of Medicine, St. Louis, MO (United States); Barry, Michele, E-mail: michele.barry@ualberta.ca [Li Ka Shing Institute of Virology, Department of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada T6G 2S2 (Canada)

2014-05-15

Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus.

Initial characterization of Vaccinia Virus B4 suggests a role in virus spread

International Nuclear Information System (INIS)

Burles, Kristin; Irwin, Chad R.; Burton, Robyn-Lee; Schriewer, Jill; Evans, David H.; Buller, R. Mark; Barry, Michele

2014-01-01

Currently, little is known about the ankyrin/F-box protein B4. Here, we report that B4R-null viruses exhibited reduced plaque size in tissue culture, and decreased ability to spread, as assessed by multiple-step growth analysis. Electron microscopy indicated that B4R-null viruses still formed mature and extracellular virions; however, there was a slight decrease of virions released into the media following deletion of B4R. Deletion of B4R did not affect the ability of the virus to rearrange actin; however, VACV811, a large vaccinia virus deletion mutant missing 55 open reading frames, had decreased ability to produce actin tails. Using ectromelia virus, a natural mouse pathogen, we demonstrated that virus devoid of EVM154, the B4R homolog, showed decreased spread to organs and was attenuated during infection. This initial characterization suggests that B4 may play a role in virus spread, and that other unidentified mediators of actin tail formation may exist in vaccinia virus. - Highlights: • B4R-null viruses show reduced plaque size, and decreased ability to spread. • B4R-null viruses formed mature and extracellular virions; and rearranged actin. • Virus devoid of EVM154, the B4R homolog, was attenuated during infection. • Initial characterization suggests that B4 may play a role in virus spread. • Unidentified mediators of actin tail formation may exist in vaccinia virus

How Hepatitis D Virus Can Hinder the Control of Hepatitis B Virus

NARCIS (Netherlands)

Xiridiou, M.; Borkent-Raven, B.; Hulshof, J.; Wallinga, J.

2009-01-01

Background: Hepatitis D (or hepatitis delta) virus is a defective virus that relies on hepatitis B virus (HBV) for transmission; infection with hepatitis D can occur only as coinfection with HBV or superinfection of an existing HBV infection. Because of the bond between the two viruses, control

9 CFR 113.215 - Bovine Virus Diarrhea Vaccine, Killed Virus.

Science.gov (United States)

2010-01-01

... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Bovine Virus Diarrhea Vaccine, Killed Virus. 113.215 Section 113.215 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE VIRUSES, SERUMS, TOXINS, AND ANALOGOUS PRODUCTS; ORGANISMS AND VECTORS STANDARD...

Influenza (Flu) Viruses

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... Types Seasonal Avian Swine Variant Pandemic Other Influenza (Flu) Viruses Language: English (US) Español Recommend on Facebook ... influenza circulate and cause illness. More Information about Flu Viruses Types of Influenza Viruses Influenza A and ...

[The growth of attenuated strains of canine parvovirus, mink enteritis virus, feline panleukopenia virus, and rabies virus on various types of cell cultures].

Science.gov (United States)

Zuffa, T

1987-10-01

The growth characteristics were studied in the attenuated strains of canine parvovirus CPVA-BN 80/82, mink enteritis virus MEVA-BN 63/82 and feline panleucopenia virus FPVA-BN 110/83 on the stable feline kidney cell line FE, and in the attenuated canine distemper virus CDV-F-BN 10/83 on chicken embryo cell cultures (KEB) and cultures of the stable cell line VERO. When the FE cultures were infected with different parvoviruses in cell suspension at MOI 2-4 TKID50 per cell, the first multiplication of the intracellular virus was recorded 20 hours p. i. In the canine parvovirus, the content of intracellular and extracellular virus continued increasing parallelly until the fourth day; then, from the fourth to the sixth day, the content of extracellular virus still increased whereas that of intracellular virus fell rapidly. In the case of the mink enteritis virus the release of the virus into the culture medium continued parallelly with the production of the cellular virus until the sixth day. In the case of the feline panleucopenia virus the values concerning free virus and virus bound to cells were lower, starting from the second day p. i. When KEB or VERO cultures were infected in cell suspension with the canine distemper virus at MOI about 0.004 per 1 cell, the replicated intracellular virus was first recorded in the KEB cultures five hours after infection but in the VERO cultures only 20 hours after infection, with a timely release of the virus into the culture medium in both kinds of tissue. In the KEB and VERO cultures the highest values of infection titres were recorded on the fourth day p. i., the course of virus multiplication on the cells being parallel with its release into the culture medium.

Viruses of asparagus.

Science.gov (United States)

Tomassoli, Laura; Tiberini, Antonio; Vetten, Heinrich-Josef

2012-01-01

The current knowledge on viruses infecting asparagus (Asparagus officinalis) is reviewed. Over half a century, nine virus species belonging to the genera Ilarvirus, Cucumovirus, Nepovirus, Tobamovirus, Potexvirus, and Potyvirus have been found in this crop. The potyvirus Asparagus virus 1 (AV1) and the ilarvirus Asparagus virus 2 (AV2) are widespread and negatively affect the economic life of asparagus crops reducing yield and increasing the susceptibility to biotic and abiotic stress. The main properties and epidemiology of AV1 and AV2 as well as diagnostic techniques for their detection and identification are described. Minor viruses and control are briefly outlined. Copyright © 2012 Elsevier Inc. All rights reserved.

Viruses and Breast Cancer

Science.gov (United States)

Lawson, James S.; Heng, Benjamin

2010-01-01

Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix. PMID:24281093

Viruses and Breast Cancer

International Nuclear Information System (INIS)

Lawson, James S.; Heng, Benjamin

2010-01-01

Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix

Viruses and Breast Cancer

Energy Technology Data Exchange (ETDEWEB)

Lawson, James S., E-mail: james.lawson@unsw.edu.au; Heng, Benjamin [School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney (Australia)

2010-04-30

Viruses are the accepted cause of many important cancers including cancers of the cervix and anogenital area, the liver, some lymphomas, head and neck cancers and indirectly human immunodeficiency virus associated cancers. For over 50 years, there have been serious attempts to identify viruses which may have a role in breast cancer. Despite these efforts, the establishment of conclusive evidence for such a role has been elusive. However, the development of extremely sophisticated new experimental techniques has allowed the recent development of evidence that human papilloma virus, Epstein-Barr virus, mouse mammary tumor virus and bovine leukemia virus may each have a role in the causation of human breast cancers. This is potentially good news as effective vaccines are already available to prevent infections from carcinogenic strains of human papilloma virus, which causes cancer of the uterine cervix.

"The evil virus cell": Students‘ knowledge and beliefs about viruses

Science.gov (United States)

Enzinger, Sonja M.; Fink, Andreas

2017-01-01

Education about virus biology at school is of pivotal interest to raise public awareness concerning means of disease transmission and, thus, methods to prevent infection, and to reduce unnecessary antibiotic treatment due to patient pressure on physicians in case of viral diseases such as influenza. This study aimed at making visible the knowledge of Austrian high school and university students with respect to virus biology, virus structure and health-education issues. The data presented here stem from comprehensive questionnaire analyses, including the task to draw a virus, from a cross-sectional study with 133 grade 7 and 199 grade 10 high school students, and 133 first-year biology and 181 first-year non-biology university students. Analyses were performed both quantitatively and qualitatively. ANOVA revealed a highly significant group effect for total knowledge relating to virus biology and health issues (F(3, 642) = 44.17, p students and grade 10 high school students. Students enrolled in university-level biology outperformed all other groups, even though they had not yet encountered this topic at their courses; part of this phenomenon might be due to their affinity for learning about biological topics. However, even many first-year biology students had a high number of severe misconceptions, e.g., defining a virus as a pro- or eukaryotic cell, or falsely naming malaria as a viral disease. Since there was no significant difference in virus-related knowledge between high schools, virus biology seems to have been taught similarly among the tested schools. However, the majority of participants stated that the virus-related knowledge they had acquired at school was not sufficient. Based on the results presented here we urgently suggest improving and intensifying teaching this topic at school, since virus-related knowledge was by far too fragmentary among many participants. Such lack of health-relevant knowledge may contribute to pressure on physicians by patients

Influenza virus inactivated by artificial ribonucleases as a prospective killed virus vaccine.

Science.gov (United States)

Fedorova, Antonina A; Goncharova, Elena P; Kovpak, Mikhail P; Vlassov, Valentin V; Zenkova, Marina A

2012-04-19

The inactivation of viral particles with agents causing minimal damage to the structure of surface epitopes is a well-established approach for the production of killed virus vaccines. Here, we describe new agents for the inactivation of influenza virus, artificial ribonucleases (aRNases), which are chemical compounds capable of cleaving RNA molecules. Several aRNases were identified, exhibiting significant virucidal activity against the influenza A virus and causing a minimal effect on the affinity of monoclonal antibodies for the inactivated virus. Using a murine model of the influenza virus infection, a high protective activity of the aRNase-inactivated virus as a vaccine was demonstrated. The results of the experiments demonstrate the efficacy of novel chemical agents in the preparation of vaccines against influenza and, perhaps, against other infections caused by RNA viruses. Copyright © 2012 Elsevier Ltd. All rights reserved.

[The great virus comeback].

Science.gov (United States)

Forterre, Patrick

2013-01-01

Viruses have been considered for a long time as by-products of biological evolution. This view is changing now as a result of several recent discoveries. Viral ecologists have shown that viral particles are the most abundant biological entities on our planet, whereas metagenomic analyses have revealed an unexpected abundance and diversity of viral genes in the biosphere. Comparative genomics have highlighted the uniqueness of viral sequences, in contradiction with the traditional view of viruses as pickpockets of cellular genes. On the contrary, cellular genomes, especially eukaryotic ones, turned out to be full of genes derived from viruses or related elements (plasmids, transposons, retroelements and so on). The discovery of unusual viruses infecting archaea has shown that the viral world is much more diverse than previously thought, ruining the traditional dichotomy between bacteriophages and viruses. Finally, the discovery of giant viruses has blurred the traditional image of viruses as small entities. Furthermore, essential clues on virus history have been obtained in the last ten years. In particular, structural analyses of capsid proteins have uncovered deeply rooted homologies between viruses infecting different cellular domains, suggesting that viruses originated before the last universal common ancestor (LUCA). These studies have shown that several lineages of viruses originated independently, i.e., viruses are polyphyletic. From the time of LUCA, viruses have coevolved with their hosts, and viral lineages can be viewed as lianas wrapping around the trunk, branches and leaves of the tree of life. Although viruses are very diverse, with genomes encoding from one to more than one thousand proteins, they can all be simply defined as organisms producing virions. Virions themselves can be defined as infectious particles made of at least one protein associated with the viral nucleic acid, endowed with the capability to protect the viral genome and ensure its

Protoplasts and plant viruses

International Nuclear Information System (INIS)

Murakishi, H.; Lesney, M.S.; Carlson, P.

1984-01-01

The use of protoplasts in the study of plant viruses has attracted considerable attention since its inception in the late 1960s. This article is an attempt to assess the current status of protoplasts (primarily) and all cell cultures (in some instances) in studies of virus infection, virus replication, cytopathology, cross-protection, virus resistance, and the use of in vitro methods and genetic engineering to recover virus-resistant plants. These areas of study proved difficult to do entirely with whole plants or plant parts. However, because protoplasts could be synchronously infected with virus, they provided a valuable alternative means of following biochemical and cytological events in relation to the virus growth cycle in a more precise manner than previously possible

Hepatitis A Virus and Hepatitis E Virus: Emerging and Re-Emerging Enterically Transmitted Hepatitis Viruses.

Science.gov (United States)

Lemon, Stanley M; Walker, Christopher M

2018-05-07

Over the past two decades, progress in understanding human infections with hepatitis A virus (HAV) and hepatitis E virus (HEV) has been eclipsed by the priority of combating persistent hepatitis B virus (HBV) and hepatitis C virus (HCV) infections. During that time, the global burden of liver disease caused by enteric hepatitis viruses has not abated. Because of vaccines, hepatitis A has become increasingly a disease of adults instead of early childhood in many regions of the world, resulting in an age-related shift toward more severe disease. HEV has remained endemic in many developing countries, and in well-developed, economically advanced countries it is now recognized as a cause of chronic, progressive liver disease in individuals with compromised immunity. The goal of this collection of articles is to review recent progress and to shine a bright light on gaps in our understanding of how these viruses replicate, cause disease, interact with the liver and host immune system, and are transmitted, along with prospects for improved control in human populations. Renewed efforts to study and compare HAV and HEV biology in humans and animal models have high potential to enhance our understanding of host-pathogen balance in the liver, and may contribute ultimately to the control of other infectious diseases of the liver. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

Evolutionary ecology of virus emergence.

Science.gov (United States)

Dennehy, John J

2017-02-01

The cross-species transmission of viruses into new host populations, termed virus emergence, is a significant issue in public health, agriculture, wildlife management, and related fields. Virus emergence requires overlap between host populations, alterations in virus genetics to permit infection of new hosts, and adaptation to novel hosts such that between-host transmission is sustainable, all of which are the purview of the fields of ecology and evolution. A firm understanding of the ecology of viruses and how they evolve is required for understanding how and why viruses emerge. In this paper, I address the evolutionary mechanisms of virus emergence and how they relate to virus ecology. I argue that, while virus acquisition of the ability to infect new hosts is not difficult, limited evolutionary trajectories to sustained virus between-host transmission and the combined effects of mutational meltdown, bottlenecking, demographic stochasticity, density dependence, and genetic erosion in ecological sinks limit most emergence events to dead-end spillover infections. Despite the relative rarity of pandemic emerging viruses, the potential of viruses to search evolutionary space and find means to spread epidemically and the consequences of pandemic viruses that do emerge necessitate sustained attention to virus research, surveillance, prophylaxis, and treatment. © 2016 New York Academy of Sciences.

A virus of hyperthermophilic archaea with a unique architecture among DNA viruses.

Science.gov (United States)

Rensen, Elena Ilka; Mochizuki, Tomohiro; Quemin, Emmanuelle; Schouten, Stefan; Krupovic, Mart; Prangishvili, David

2016-03-01

Viruses package their genetic material in diverse ways. Most known strategies include encapsulation of nucleic acids into spherical or filamentous virions with icosahedral or helical symmetry, respectively. Filamentous viruses with dsDNA genomes are currently associated exclusively with Archaea. Here, we describe a filamentous hyperthermophilic archaeal virus, Pyrobaculum filamentous virus 1 (PFV1), with a type of virion organization not previously observed in DNA viruses. The PFV1 virion, 400 ± 20 × 32 ± 3 nm, contains an envelope and an inner core consisting of two structural units: a rod-shaped helical nucleocapsid formed of two 14-kDa major virion proteins and a nucleocapsid-encompassing protein sheath composed of a single major virion protein of 18 kDa. The virion organization of PFV1 is superficially similar to that of negative-sense RNA viruses of the family Filoviridae, including Ebola virus and Marburg virus. The linear dsDNA of PFV1 carries 17,714 bp, including 60-bp-long terminal inverted repeats, and contains 39 predicted ORFs, most of which do not show similarities to sequences in public databases. PFV1 is a lytic virus that completely disrupts the host cell membrane at the end of the infection cycle.

DIAGNOSTICS OF VIRUS PHYTOPATHOGENS FRUIT TREE PLUM POX VIRUS, PRUNUS NECROTIC RINGSPOT VIRUS AND PRUNUS DWARF VIRUS BY BIOLOGICAL AND MOLECULAR DIAGNOSTICS

OpenAIRE

Július Rozák; Zdenka Gálová

2013-01-01

The aim of this study was to determine the incidence of viral phytopathogen Plum pox virus, Prunus necrotic ringspot virus and Prunus dwarf virus in selected localities of Slovakia and diagnose them using a molecular and biological methods. Forty samples of fruit trees of the genus Prunus, twenty samples from intensive plantings and twenty samples from wild subject were analysed. Biological diagnostic by using biological indicators Prunus persica cv. GF 305, Prunus serrulata cv. Schirofugen a...

Functional properties of Virus-Encoded and Virus-Regulated 7TM Receptors

DEFF Research Database (Denmark)

Spiess, Katja; Rosenkilde, Mette Marie

2014-01-01

During co-evolution with their hosts, viruses have developed several survival strategies that involve exploitation of 7TM receptors. These include virus-encoded 7TM receptors and ligands and viral regulation of endogenous receptors. Many functional properties have been ascribed to virus-exploited...

Electron microscopic identification of Zinga virus as a strain of Rift Valley fever virus.

Science.gov (United States)

Olaleye, O D; Baigent, C L; Mueller, G; Tomori, O; Schmitz, H

1992-01-01

Electron microscopic examination of a negatively stained suspension of Zinga virus showed particles 90-100 nm in diameter, enveloped with spikes 12-20 nm in length and 5 nm in diameter. Further identification of the virus by immune electron microscopy showed the reactivity of human Rift Valley fever virus-positive serum with Zinga virus. Results of this study are in agreement with earlier reports that Zinga virus is a strain of Rift Valley fever virus.

Nonhuman Primate Models of Hepatitis A Virus and Hepatitis E Virus Infections.

Science.gov (United States)

Lanford, Robert E; Walker, Christopher M; Lemon, Stanley M

2018-04-23

Although phylogenetically unrelated, human hepatitis viruses share an exclusive or near exclusive tropism for replication in differentiated hepatocytes. This narrow tissue tropism may contribute to the restriction of the host ranges of these viruses to relatively few host species, mostly nonhuman primates. Nonhuman primate models thus figure prominently in our current understanding of the replication and pathogenesis of these viruses, including the enterically transmitted hepatitis A virus (HAV) and hepatitis E virus (HEV), and have also played major roles in vaccine development. This review draws comparisons of HAV and HEV infection from studies conducted in nonhuman primates, and describes how such studies have contributed to our current understanding of the biology of these viruses. Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

Zika Virus

Science.gov (United States)

... Funding CDC Activities For Healthcare Providers Clinical Evaluation & Disease Sexual Transmission HIV Infection & Zika Virus Testing for Zika Test Specimens – At Time of Birth Diagnostic Tests Understanding Zika Virus Test Results ...

Hepatitis C virus infection in the human immunodeficiency virus infected patient

DEFF Research Database (Denmark)

Clausen, Louise Nygaard; Lundbo, Lene Fogt; Benfield, Thomas

2014-01-01

Human immunodeficiency virus (HIV) and hepatitis C virus (HCV) share the same transmission routes; therefore, coinfection is frequent. An estimated 5-10 million individuals alone in the western world are infected with both viruses. The majority of people acquire HCV by injection drug use and...

Immunological responses against human papilloma virus and human papilloma virus induced laryngeal cancer.

Science.gov (United States)

Chitose, Shun-ichi; Sakazaki, T; Ono, T; Kurita, T; Mihashi, H; Nakashima, T

2010-06-01

This study aimed to clarify the local immune status in the larynx in the presence of infection or carcinogenesis associated with human papilloma virus. Cytological samples (for human papilloma virus detection) and laryngeal secretions (for immunoglobulin assessment) were obtained from 31 patients with laryngeal disease, during microscopic laryngeal surgery. On histological examination, 12 patients had squamous cell carcinoma, four had laryngeal papilloma and 15 had other benign laryngeal disease. Cytological samples were tested for human papilloma virus DNA using the Hybrid Capture 2 assay. High risk human papilloma virus DNA was detected in 25 per cent of patients (three of 12) with laryngeal cancer. Low risk human papilloma virus DNA was detected only in three laryngeal papilloma patients. The mean laryngeal secretion concentrations of immunoglobulins M, G and A and secretory immunoglobulin A in human papilloma virus DNA positive patients were more than twice those in human papilloma virus DNA negative patients. A statistically significant difference was observed between the secretory immunoglobulin A concentrations in the two groups. Patients with laryngeal cancer had higher laryngeal secretion concentrations of each immunoglobulin type, compared with patients with benign laryngeal disease. The study assessed the mean laryngeal secretion concentrations of each immunoglobulin type in the 12 laryngeal cancer patients, comparing human papilloma virus DNA positive patients (n = 3) and human papilloma virus DNA negative patients (n = 9); the mean concentrations of immunoglobulins M, G and A and secretory immunoglobulin A tended to be greater in human papilloma virus DNA positive cancer patients, compared with human papilloma virus DNA negative cancer patients. These results suggest that the local laryngeal immune response is activated by infection or carcinogenesis due to human papilloma virus. The findings strongly suggest that secretory IgA has inhibitory activity

Deep-Sea Hydrothermal Vent Viruses Compensate for Microbial Metabolism in Virus-Host Interactions.

Science.gov (United States)

He, Tianliang; Li, Hongyun; Zhang, Xiaobo

2017-07-11

Viruses are believed to be responsible for the mortality of host organisms. However, some recent investigations reveal that viruses may be essential for host survival. To date, it remains unclear whether viruses are beneficial or harmful to their hosts. To reveal the roles of viruses in the virus-host interactions, viromes and microbiomes of sediment samples from three deep-sea hydrothermal vents were explored in this study. To exclude the influence of exogenous DNAs on viromes, the virus particles were purified with nuclease (DNase I and RNase A) treatments and cesium chloride density gradient centrifugation. The metagenomic analysis of viromes without exogenous DNA contamination and microbiomes of vent samples indicated that viruses had compensation effects on the metabolisms of their host microorganisms. Viral genes not only participated in most of the microbial metabolic pathways but also formed branched pathways in microbial metabolisms, including pyrimidine metabolism; alanine, aspartate, and glutamate metabolism; nitrogen metabolism and assimilation pathways of the two-component system; selenocompound metabolism; aminoacyl-tRNA biosynthesis; and amino sugar and nucleotide sugar metabolism. As is well known, deep-sea hydrothermal vent ecosystems exist in relatively isolated environments which are barely influenced by other ecosystems. The metabolic compensation of hosts mediated by viruses might represent a very important aspect of virus-host interactions. IMPORTANCE Viruses are the most abundant biological entities in the oceans and have very important roles in regulating microbial community structure and biogeochemical cycles. The relationship between virus and host microbes is broadly thought to be that of predator and prey. Viruses can lyse host cells to control microbial population sizes and affect community structures of hosts by killing specific microbes. However, viruses also influence their hosts through manipulation of bacterial metabolism. We found

Hydrothermal Carbonization of Municipal Woody and Herbaceous Prunings: Hydrochar Valorisation as Soil Amendment and Growth Medium for Horticulture

Directory of Open Access Journals (Sweden)

Monica Puccini

2018-03-01

Full Text Available In this study, we investigate the suitability of hydrochar, produced at industrial scale by hydrothermal carbonization of municipal woody and herbaceous prunings, to be used as soil amendment and peat substitute in organic growth medium for horticulture. Fresh hydrochar and the products of two different hydrochar post-treatments (i.e., washing and aging were compared in terms of potential phytotoxicity throughout physicochemical characterization and germination tests, performed with a sensitive species (Lactuca sativa. The results showed that the fresh hydrochar obtained from municipal green wastes complies with the Italian regulated parameters for the use as soil amendment. Moreover, hydrochar exhibits biological activity and a high content in organic C, Ca, and other micronutrients (Mg, Zn, Cu, Na, Cl. On the other hand, post-treatments are needed before application of hydrochar as peat substitute in potting mix, since appreciable phytotoxic effects on lettuce seed germination and radicle length of plantlets were observed (e.g., germination percentage of 56% and 54%, with 5 and 10 wt % of hydrochar in the blend, respectively. The inhibition of germination could be mainly attributed to the presence of polyphenols (tannins and volatile fatty acids, which were most effectively removed through the aging post-treatment.

Viruses in reptiles.

Science.gov (United States)

Ariel, Ellen

2011-09-21

The etiology of reptilian viral diseases can be attributed to a wide range of viruses occurring across different genera and families. Thirty to forty years ago, studies of viruses in reptiles focused mainly on the zoonotic potential of arboviruses in reptiles and much effort went into surveys and challenge trials of a range of reptiles with eastern and western equine encephalitis as well as Japanese encephalitis viruses. In the past decade, outbreaks of infection with West Nile virus in human populations and in farmed alligators in the USA has seen the research emphasis placed on the issue of reptiles, particularly crocodiles and alligators, being susceptible to, and reservoirs for, this serious zoonotic disease. Although there are many recognised reptilian viruses, the evidence for those being primary pathogens is relatively limited. Transmission studies establishing pathogenicity and cofactors are likewise scarce, possibly due to the relatively low commercial importance of reptiles, difficulties with the availability of animals and permits for statistically sound experiments, difficulties with housing of reptiles in an experimental setting or the inability to propagate some viruses in cell culture to sufficient titres for transmission studies. Viruses as causes of direct loss of threatened species, such as the chelonid fibropapilloma associated herpesvirus and ranaviruses in farmed and wild tortoises and turtles, have re-focused attention back to the characterisation of the viruses as well as diagnosis and pathogenesis in the host itself.

A REVIEW ON ZIKA VIRUS (ZIKV) -A DREADFUL MEMBER OF THE VIRUS FAMILY FLAVIVIRIDAE

OpenAIRE

1Rafiya Begum, 2 Raafia Aseena, 3Nuha Rasheed and 4 Abdul Saleem Mohammad

2017-01-01

Research on zika virus examine the virus that is spread to humans through a mosquito bite, with symptoms that include fever, rash, joint pain, and conjuctivities. For most people zika virus is not necessarily anything to worry, as it is not fatal and symptoms are generally mild for period up to a week. Hospitalization because of zika virus is almost always not necessary. However, the zika virus can be extremely dangerous to pregnant womes. Key Words: Zika, virus, transmission, fatal, flavivir...

Type C virus activation in nontransformed mouse cells by uv-irradiated herpes simplex virus

Energy Technology Data Exchange (ETDEWEB)

Hampar, B. (National Institutes of Health, Bethesda, MD); Hatanaka, M.; Aulakh, G.; Derge, J.G.; Lee, L.; Showalter, S.

1977-02-01

Infection of nontransformed mouse cells with uv-irradiated herpes simplex virus (uv-HSV) resulted in the activation of an endogenous xenotropic (x-tropic) type C virus. Synthesis of type C virus persisted for only a few days, with most of the virus remaining cell associated. The levels of type C virus activated by uv-HSV varied depending on the multiplicity of infection (m.o.i.) and the uv dose. At low uv doses, where cell killing occurred, little or no type C virus synthesis was observed. Maximum levels of type C virus synthesis were observed with the minimum uv dose which eliminated cell killing by HSV. Synthesis of type C virus, albeit at lower levels, was still observed at uv doses beyond those required to prevent cell killing.