Effects of Elevated CO2 Concentration on the Biomasses and Nitrogen Concentrations in the Organs of Sainfoin(Onobrychis viciaefolia Scop.)

Institute of Scientific and Technical Information of China (English)

ZHOU Zheng-chao; SHANGGUAN Zhou-ping

2009-01-01

In forage grasses,the nitrogen concentration is directly related to the nutritional value.The studies examined the hypothesis that global elevation of CO2 concentration probably affects the biomass,nitrogen(N)concentration,and allocation and distribution patterns in the organs of forage grasses.While sainfoin(Onobrychis viciaefolia Scop.)seedlings grew on a low nutrient soil in closed chambers for 90 days,they were exposed to two CO2 concentrations(ambient or ambient+350μmol mol-1 CO2)without adding nutrients to them.After 90 days exposure to CO2,the biomasses of leaves,stems,and roots,and N concentrations and contents of different parts were measured.Compared with the ambient CO2 concentration,the elevated CO2 concentration increased the total dry matter by 25.07%,mainly due to the root and leaf having positive response to the elevated CO2 concentration.However,the elevated CO2 concentration did not change the proportions of the dry matters in different parts and the total plants compared with the ambient CO2 concentration.The elevated CO2 concentration lowered the N concentrations of the plant parts.Because the dry matter was higher,the elevated CO2 concentration had no effect on the N content in the plants compared to the ambient CO2 concentration.The elevated CO2 concentration promoted N allocations of the different parts significantly and increased N allocation of the underground part.The results have confirmed the previous suggestions that the elevated CO2 concentration stimulates plant biomass production and decreases the N concentrations of the plant parts.

Condensed Tannins in the Gastrointestinal Tract of Cattle after Sainfoin (Onobrychis viciifolia) Intake and Their Possible Relationship with Anthelmintic Effects

DEFF Research Database (Denmark)

Desrues, Olivier; Mueller-Harvey, Irene; Pellikaan, Wilbert F

2017-01-01

Condensed tannins' (CTs) fate along the digestive tract of ruminants may account for the variable efficacy of CTs against gastrointestinal nematodes. We analyzed CTs in the digesta of cattle fed sainfoin. With the acetone-butanol-HCl assay, the total CTs concentrations in the digesta were close...

Anthelmintic effect of carob pods and sainfoin hay when fed to lambs after experimental trickle infections with Haemonchus contortus and Trichostrongylus colubriformis

Directory of Open Access Journals (Sweden)

Arroyo-Lopez Celia

2014-01-01

Full Text Available The aim of the study was to compare the in vivo anthelmintic activity of sainfoin hay (Onobrychis viciifolia and carob pod meal (Ceratonia siliqua against gastrointestinal nematodes. Seven days before infection, 64 naive lambs were assigned to four different groups: Group S received sainfoin hay and group CAR was fed with carob pods. The remaining lambs received lucerne hay (Medicago sativa and were assigned to positive (non-treated, NT and negative (treated, T control groups (treatment with albendazole. On day 0, lambs were artificially trickle infected for 6 weeks, with a mixture of infective larvae of Haemonchus contortus and Trichostrongylus colubriformis. Parasitological and pathophysiological parameters were measured repeatedly during the 2-month study. Compared to the NT group, decreases in egg excretion were observed in the CAR and S groups with significant differences only found for sainfoin (p < 0.05. At necropsy, group S showed decreases in the total worm numbers of both nematode species with significant differences for H. contortus. In contrast, no differences were noticed for the CAR group. Compared to the NT group, lower values for fecundity of female H. contortus were found in the S and CAR groups, however differences were non-significant. No differences in body weight gains were found between groups. Consistent results were found showing significantly higher packed cell volume (PCV values in the T and S groups compared to NT and CAR groups. Overall, these results confirm a positive effect associated with the feeding of lambs with tanniniferous resources on host resilience (PCV values and against gastrointestinal parasitic nematodes by affecting some biological traits of worm populations (e.g. eggs per gram of faeces and worm numbers. However, the anthelmintic effects differed between the two tannin-containing resources, which might be associated with the quantity and/or quality of secondary metabolites (condensed tannins and

Anthelmintic effect of carob pods and sainfoin hay when fed to lambs after experimental trickle infections with Haemonchus contortus and Trichostrongylus colubriformis.

Science.gov (United States)

Arroyo-Lopez, Celia; Manolaraki, Foteini; Saratsis, Anastasios; Saratsi, Katerina; Stefanakis, Alexandros; Skampardonis, Vasileios; Voutzourakis, Nikolaos; Hoste, Hervé; Sotiraki, Smaragda

2014-01-01

The aim of the study was to compare the in vivo anthelmintic activity of sainfoin hay (Onobrychis viciifolia) and carob pod meal (Ceratonia siliqua) against gastrointestinal nematodes. Seven days before infection, 64 naive lambs were assigned to four different groups: Group S received sainfoin hay and group CAR was fed with carob pods. The remaining lambs received lucerne hay (Medicago sativa) and were assigned to positive (non-treated, NT) and negative (treated, T) control groups (treatment with albendazole). On day 0, lambs were artificially trickle infected for 6 weeks, with a mixture of infective larvae of Haemonchus contortus and Trichostrongylus colubriformis. Parasitological and pathophysiological parameters were measured repeatedly during the 2-month study. Compared to the NT group, decreases in egg excretion were observed in the CAR and S groups with significant differences only found for sainfoin (p < 0.05). At necropsy, group S showed decreases in the total worm numbers of both nematode species with significant differences for H. contortus. In contrast, no differences were noticed for the CAR group. Compared to the NT group, lower values for fecundity of female H. contortus were found in the S and CAR groups, however differences were non-significant. No differences in body weight gains were found between groups. Consistent results were found showing significantly higher packed cell volume (PCV) values in the T and S groups compared to NT and CAR groups. Overall, these results confirm a positive effect associated with the feeding of lambs with tanniniferous resources on host resilience (PCV values) and against gastrointestinal parasitic nematodes by affecting some biological traits of worm populations (e.g. eggs per gram of faeces and worm numbers). However, the anthelmintic effects differed between the two tannin-containing resources, which might be associated with the quantity and/or quality of secondary metabolites (condensed tannins and/or other

Data growth and its impact on the SCOP database: new developments

Energy Technology Data Exchange (ETDEWEB)

Chandonia, John-Marc; Andreeva, Antonina; Howorth, Dave; Chandonia, John-Marc; Brenner, Steven E.; Hubbard, Tim J.P.; Chothia, Cyrus; Murzin, Alexey G.

2007-11-13

The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. The SCOP hierarchy comprises the following levels: Species, Protein, Family, Superfamily, Fold and Class. While keeping the original classification scheme intact, we have changed the production of SCOP in order to cope with a rapid growth of new structural data and to facilitate the discovery of new protein relationships. We describe ongoing developments and new features implemented in SCOP. A new update protocol supports batch classification of new protein structuresby their detected relationships at Family and Superfamily levels in contrast to our previous sequential handling of new structural data by release date. We introduce pre-SCOP, a preview of the SCOP developmental version that enables earlier access to the information on new relationships. We also discuss the impact of worldwide Structural Genomics initiatives, which are producing new protein structures at an increasing rate, on the rates of discovery and growth of protein families and superfamilies. SCOP can be accessed at http://scop.mrc-lmb.cam.ac.uk/scop.

Beneficial Effects of Temperate Forage Legumes that Contain Condensed Tannins

Directory of Open Access Journals (Sweden)

Jennifer W. MacAdam

2015-07-01

Full Text Available The two temperate forage legumes containing condensed tannins (CT that promote ruminant production are birdsfoot trefoil (Lotus corniculatus L.; BFT and sainfoin (Onobrychis viciifolia Scop.; SF. Both are well-adapted to the cool-temperate climate and alkaline soils of the Mountain West USA. Condensed tannins comprise a diverse family of bioactive chemicals with multiple beneficial functions for ruminants, including suppression of internal parasites and enteric methane. Birdsfoot trefoil contains 10 to 40 g·CT·kg−1 dry matter (DM, while SF contains 30 to 80 g·CT·kg−1 DM. Our studies have focused on these two plant species and have demonstrated consistently elevated rates of gain for beef calves grazing both BFT and SF. Novel results from our BFT research include carcass dressing percentages and consumer sensory evaluations equivalent to feedlot-finished steers and significantly greater than grass-finished steers, but with omega-3 fatty acid concentrations equal to grass-finished beef. We have further demonstrated that ruminants fed BFT or SF will consume more endophyte-infected tall fescue (Schedonorus arundinaceus (Schreb. Dumort. forage or seed than ruminants fed a non-CT forage legume. There is great potential value for sustainable livestock production in the use of highly digestible, nitrogen-fixing legumes containing tannins demonstrated to improve ruminant productivity.

A high level interface to SCOP and ASTRAL implemented in Python

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Saqi Mansoor AS

2006-01-01

Full Text Available Abstract Background Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP database is a manually curated structural classification which groups together proteins on the basis of structural similarity. The ASTRAL compendium provides non redundant subsets of SCOP domains on the basis of sequence similarity such that no two domains in a given subset share more than a defined degree of sequence similarity. Taken together these two resources provide a 'ground truth' for assessing structural bioinformatics algorithms. We present a small and easy to use API written in python to enable construction of datasets from these resources. Results We have designed a set of python modules to provide an abstraction of the SCOP and ASTRAL databases. The modules are designed to work as part of the Biopython distribution. Python users can now manipulate and use the SCOP hierarchy from within python programs, and use ASTRAL to return sequences of domains in SCOP, as well as clustered representations of SCOP from ASTRAL. Conclusion The modules make the analysis and generation of datasets for use in structural genomics easier and more principled.

Influence of different forages on gastrointestinal namatode infections in grazing lambs

OpenAIRE

Thamsborg, S.M.; Mejer, H.; Bandier, M.; Larsen, M.

2003-01-01

Nematode infections of sheep may be influenced by secondary compounds in the diet, e.g. condensed tannins. A study was performed with 7 groups of lambs experimentally infected with Teladorsagia circumcincta and Trichostronglylus vitrinus. All groups were grazed on clean clover-grass pasture and then moved to paddocks with bioactive forages with either sainfoin (Onobrychis viciifolia) (groups Pre-S and Post-S), chicory (Cichorium intybus, cv. Grasslands Puna) (Pre-C and Post-C) or clover-grass...

The SCOP-formalism: an Operational Approach to Quantum Mechanics

International Nuclear Information System (INIS)

D'Hooghe, Bart

2010-01-01

We present the SCOP-formalism, an operational approach to quantum mechanics. If a State-COntext-Property-System (SCOP) satisfies a specific set of 'quantum axioms,] it fits in a quantum mechanical representation in Hilbert space. We present a model in which the maximal change of state of the system due to interaction with the measurement context is controlled by a parameter N. In the case N = 2 the system reduces to a model for the spin measurements on a quantum spin-1/2 particle. In the limit N→∞ the system is classical. For the intermediate cases it is impossible to define an orthocomplementation on the set of properties. Another interesting feature is that the probability of a state transition also depends on the context which induces it. This contrasts sharply with standard quantum mechanics for which Gleason's theorem states the uniqueness of the state transition probability and independent of measurement context. We show that if a SCOP satisfies a Gleason-like condition, namely that all state transition probabilities are independent of which measurement context induces the change of state, then the lattice of properties is orthocomplemented.

Contrasting Pollination Efficiency and Effectiveness among Flower Visitors of Malva Sylvestris, Borago Officinalis and Onobrychis Viciifolia

OpenAIRE

Gorenflo, Anna; Diekötter, Tim; van Kleunen, Mark; Wolters, Volkmar; Jauker, Frank

2017-01-01

Biotic pollination is an important factor for ecosystem functioning and provides a substantial ecosystem service to human food security. Not all flower visitors are pollinators, however, and pollinators differ in their pollination performances. In this study, we determined the efficiencies of flower visitors to the plant species Malva sylvestris, Borago officinalis and Onobrychis viciifolia by analysing stigmatic pollen deposition. We further calculated pollinator effectiveness by scaling up ...

Fatty acid composition of ruminal digesta and longissimus muscle from lambs fed silage mixtures including red clover, sainfoin, and timothy.

Science.gov (United States)

Campidonico, L; Toral, P G; Priolo, A; Luciano, G; Valenti, B; Hervás, G; Frutos, P; Copani, G; Ginane, C; Niderkorn, V

2016-04-01

This work investigated the effects of feeding silage mixtures of a plant containing polyphenol oxidase (PPO; red clover [; RC]), a plant containing tannins (sainfoin [; SF]), and a grass species not containing these compounds (timothy [; T]) on ruminal and intramuscular (i.m.) fatty acids of lambs. Forty 4-mo-old castrated male Romane lambs, divided into 5 groups, received 1 of the following silages: 1) T (100%), 2) a binary mixture of timothy and tannin-containing sainfoin ( cv. Perly; 50:50 [T-SF]), 3) a binary mixture of timothy and PPO-containing red clover ( cv. Mervius; 50:50 [T-RC]), 4) a ternary mixture of timothy, sainfoin, and red clover containing both tannins and PPO (50:25:25, respectively [T-SF-RC]), and 5) a binary mixture of tannin-containing sainfoin and PPO-containing red clover (50:50 [SF-RC]). In the rumen digesta, the partial or total replacement of T with forage legumes was associated with greater concentrations of PUFA ( forage legumes in the silage favored the accumulation of 18:3 -3 ( Forage legumes decreased the -11 18:1 to 30% of T in rumen digesta ( Forage legumes decreased the total concentration of branched-chain fatty acids in the rumen digesta (on average, -28%; comparison with T. The dietary treatment tended to affect the proportion of MUFA ( = 0.081) and of PUFA ( = 0.079) in the i.m. fat of the LM, respectively, at the highest and lowest numerical value in the T group. The sum of -3 fatty acids was less in the T and T-SF groups compared with the mixture of legumes without T (SF-RC; comparison with lambs given T-RC, T-SF-RC, and SF-RC. Rumenic acid (-9 -11 CLA) was detected at a greater percentage in the LM from the animals fed the T silage compared with animals fed the T-SF-RC treatment ( = 0.004). Contrarily, -9 -12 -15 18:3 was found at a greater concentration in the muscle from lambs in the SF-RC treatment compared with lambs in the other treatments ( forage for growing lambs in terms of i.m. fatty acid composition.

Behaviour of Onobrychis Viciifolia Growing on Fly Ash Experimental Parcels

Directory of Open Access Journals (Sweden)

Florica Morariu

2011-05-01

Full Text Available Studies were conducted to identify a treatment method for upper layers of fly ash to cover them with vegetation. Fixing plant layer acts against erosion/washes of fly ash deposits. Studies emphasized the need of use of an organic fertilizer mixed with inorganic materials such as volcanic tuff and, also, the need of selecting a plant species compatible with the treated culture medium. The use of an amended variant of compost and modified volcanic tuff of fly ash layers shows that the selected leguminous species, Onobrychis viciifolia, installs itself quickly on the third level of Braun - Blanquet scale. The reduction of toxic heavy metals bioaccumulation from the aerial plant tissues such as lead and nickel of 72-79%, and copper and zinc of 50-68%, respectively, allows obtaining of a safe biomass for wildlife visiting the area.

Evaluation of 'best practice' (SCOPS) guidelines for nematode control on commercial sheep farms in England and Wales.

Science.gov (United States)

Learmount, Jane; Gettinby, George; Boughtflower, Valerie; Stephens, Nathalie; Hartley, Kayleigh; Allanson, Peter; Gutierrez, Alba Barrecheguren; Perez, David; Taylor, Mike

2015-01-30

Parasitic diseases are a major constraint to optimum livestock production and are the major cause of economic loss in UK sheep flocks, with farmers remaining dependant on anthelmintics for control. In the UK, research and evidence based, "best practice" guidelines for sustainable control of parasites in sheep (SCOPS) were first produced in 2004 and have been regularly updated since. This study was designed to evaluate the effect of these best practice guidelines for worm control on lamb production and infection levels, compared with more traditional management. Sixteen farms were selected based on a 2 cube factorial design with 3 factors known to affect worm epidemiology: control regimen; farm type; and climatic region. A formalised plan for worm control using 7 potential resistance-delaying practices was prepared for each of the 8 best practice (SCOPS) farms, in conjunction with the farms veterinarians. The 8 farms in the traditional management group (CONTROL farms) were selected based on ongoing evidence of them using worm control strategies deemed to be "higher-risk". A cohort of 40-50 study lambs at each farm was monitored from birth to finishing, allowing evaluation of lamb productivity, worm infection levels and for comparison of numbers of anthelmintic treatments. Birth and mid-season weights were used to calculate daily live-weight gain. Birth and finish dates were used to calculate time to finish and finish weights were also compared. Faecal egg counts, larval culture and species differentiation were undertaken throughout the year to assess the impact of the control strategies on worm burdens. There was no significant difference in results for any of the 3 production responses when comparing predicted means accounting for the differences in birth weight. In fact SCOPS farms had, on average, a higher daily weight gain and finish weight than CONTROL farms when comparing observed means. Statistical analysis of infection levels clearly showed no significant

Study of sedative preanaesthetic and anxiolytic effects of herbal extract of Tilia platyphyllos scop in comparison with diazepam in the rat

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A Rezaie

2011-05-01

Full Text Available Tilia platyphyllos scop belongs to the Tiliaceae family and mainly grows in northern parts of the country. It has various pharmacological effects including anxiolytic, antibacterial, anticonvulsant, spasmolytic, tranquilization and sedation, hypnotic and muscular relaxation. In order to study sedative, preanaesthetic and anxiolytic effects herbal extract of Tiliaplatyphyllos scop in comparison with diazepam in different groups of female Wistar rats with the same age and weight, doses of 150 mg/kg, 300 mg/kg and  450 mg/kg of herbal extract, 1.2 mg/kg of diazepam and equal volumes of dimethyl sulfoxide as a placebo were injected to rats intraperitoneally 30 minutes prior to evaluation of sedative and preanaesthetic effects (induced sleep duration following 40 mg/kg administration intraperitoneally and anxiolytic effects (using elevated plus maze and Rotarod test. Statistical results obtained represent a significant increase in sleep time induced with ketamine and also a significant increase in time spent by rats in open arms of maze with high and low doses of Tiliaplatyphyllos scop herbal extract (p

Effect of exchanging Onobrychis viciifolia and Lotus corniculatus for Medicago sativa on ruminal fermentation and nitrogen turnover in dairy cows.

Science.gov (United States)

Grosse Brinkhaus, A; Bee, G; Silacci, P; Kreuzer, M; Dohme-Meier, F

2016-06-01

The objective of the study was to determine the effect of feeding sainfoin (SF; Onobrychis viciifolia) and birdsfoot trefoil (BT; Lotus corniculatus), 2 temperate climate forage legumes that contain condensed tannins (CT), on ruminal fermentation and N turnover in dairy cows. Six ruminally cannulated multiparous dairy cows (milk yield=40kg/d; 36 d in milk) were used in a replicated 3×3 Latin square design. All animals were fed basal diets containing 20% pelleted SF (223g of CT/kg of dry matter), BT (30.3g of CT/kg of dry matter), or alfalfa (AL) and concentrate to meet their predicted nutrient requirements. Each experimental period consisted of a 21-d adaptation period in a tiestall, followed by a 7-d collection period in metabolic crates, where feces and urine were collected quantitatively. During the 7-d period, milk yield was recorded daily and milk samples were taken at each milking. Blood, ruminal fluid, and papillae were sampled on d 2 and 5. The relative abundance of selected bacterial strains in ruminal fluid and the gene expression of transporter genes in the papillae were determined with quantitative PCR. Total volatile fatty acids and the abundance of the cellulolytic bacteria Prevotella spp. and Ruminococcus flavefaciens decreased with SF compared with AL. The relative gene expression of the monocarboxylate transporter 1 was increased with BT compared with AL and SF. Total yields of milk, milk fat, and milk protein were similar among treatments. The proportion of 18:3n-3 in milk fat was greater and those of 22:5n-3 and 22:6n-3 were lower with SF than with BT. The contents of urea N in blood (2.71, 3.45, and 3.90mmol/L for SF, AL, and BT, respectively), milk (79.8, 100.1, and 110.9mg/kg for SF, AL, and BT, respectively), and urine were lower with SF than with AL and BT, and a trend toward a lower ruminal ammonia content occurred with SF compared with BT. Intake and excretion of N with milk were similar among treatments, but urine N was lower with SF

SCOPS and COWS--'worming it out of UK farmers'.

Science.gov (United States)

Taylor, M A

2012-05-04

Infections with gastrointestinal roundworms are an important cause of production losses in sheep and cattle. Worm control is a vital part of health and production management in sheep flocks and cattle herds in the UK, and good control is highly dependent on effective anthelmintics. Unfortunately, a direct and unavoidable consequence of using anthelmintics to control worm populations is selection for individuals that are resistant to the chemicals used. If left unchecked, anthelmintic resistance (AR) could prove to be one of the biggest challenges to sheep and cattle production and animal welfare within the UK. As a consequence of increasing reports of AR in sheep, a working group, "SCOPS" (sustainable control of parasites in sheep) was formed in 2003 with representatives from the UK sheep industry to promote practical guidelines for sheep farmers and their advisors. This led to the production of guidelines for 'sustainable worm control strategies for sheep' intended for veterinarians and sheep advisors, plus ongoing promotional literature aimed at farmers. Whilst there is some evidence of emerging resistance in roundworms of cattle, it appears to still be at a very low level in the UK. However the potential presence of such AR in cattle worms has been seen as a timely warning, which if ignored, could lead to a not dissimilar AR situation to that seen in sheep, and in other cattle areas around the world. Reports of AR in UK cattle nematodes have generally been limited to a small number of anecdotal reports of treatment failure with some macrocyclic lactone (ML) products, especially those formulated as pour-on preparations, and invariably involving the dose-limiting species, Cooperia oncophora. As a consequence of these observations, guidelines have been produced similar to those for sheep, for sustainable worm control strategies for cattle "COWS" (control of worms sustainably), and were launched in May 2010. Uptake and effectiveness of SCOPS recommendations are

The Simple Concurrent Online Processing System (SCOPS) - An open-source interface for remotely sensed data processing

Science.gov (United States)

Warren, M. A.; Goult, S.; Clewley, D.

2018-06-01

Advances in technology allow remotely sensed data to be acquired with increasingly higher spatial and spectral resolutions. These data may then be used to influence government decision making and solve a number of research and application driven questions. However, such large volumes of data can be difficult to handle on a single personal computer or on older machines with slower components. Often the software required to process data is varied and can be highly technical and too advanced for the novice user to fully understand. This paper describes an open-source tool, the Simple Concurrent Online Processing System (SCOPS), which forms part of an airborne hyperspectral data processing chain that allows users accessing the tool over a web interface to submit jobs and process data remotely. It is demonstrated using Natural Environment Research Council Airborne Research Facility (NERC-ARF) instruments together with other free- and open-source tools to take radiometrically corrected data from sensor geometry into geocorrected form and to generate simple or complex band ratio products. The final processed data products are acquired via an HTTP download. SCOPS can cut data processing times and introduce complex processing software to novice users by distributing jobs across a network using a simple to use web interface.

A study on the determination of the morphological, yield and quality characteristics of some sainfoin species (onobrychis spp.) native to east anatolia

International Nuclear Information System (INIS)

Okcu, M.; Sengul, S.

2014-01-01

Objective of the present study is to identify the species belonging to the genus Onobrychis (Fabaceae) growing native in and around Erzurum, and to determine their overall prevalence and morphological and quality characteristics. Species samples were collected from different locations in flowering periods of 2007, 2008 and 2009. At the end of the study, totally 10 genotypes were found representing 8 species and 2 sub-species. It was found that leaf length and leaflet frequency were the largest in O. atropatana var. grandiflora, the number of leaflets was the highest in O. viciifolia, the length and width of leaflets were maximum in O. radiata, the number of main branches and the number of fascicles in main branches were in O. hajastana, crude ash rate was highest in O. stenostachya, plant fresh and dry weight, ADF and NDF rate were highest in O. cornuta, where as crude protein rate was slightly higher in O. stenostachya subsp. sosnowskyi than other taxa. (author)

The influence of cover crops and tillage on actual and potential soil erosion in an olive grove

Science.gov (United States)

Sastre, Blanca; Bienes, Ramón; García-Díaz, Andrés; Panagopoulos, Thomas; José Marqués, Maria

2014-05-01

The study was carried out in an olive grove in central Spain (South of Madrid; Tagus River Basin). In this semi-arid zone, the annual mean temperature is 13.8 ºC and the annual precipitation is 395 mm. Olive groves are planted in an erosion prone area due to steep slopes up to 15%. Soil is classified as Typic Haploxerept with clay loam texture. The land studied was formerly a vineyard, but it was replaced by the studied olive grove in 2004. It covers approximately 3 ha and olive trees are planted every 6 x 7 metres. They were usually managed by tillage to decrease weed competition. This conventional practice results in a wide surface of bare soil prone to erosion processes. In the long term soil degradation may lead to increase the desertification risk in the area. Storms have important consequences in this shallow and vulnerable soil, as more than 90 Mg ha-1 have been measured after one day with 40 mm of rainfall. In order to avoid this situation, cover crops between the olive trees were planted three years ago: sainfoin (Onobrychis viciifolia), barley (Hordeum vulgare), and purple false brome (Brachypodium distachyon), and they were compared with annual spontaneous vegetation after a minimum tillage treatment (ASV). The results regarding erosion control were positive. We observed (Oct. 2012/Sept. 2013) annual soil loss up to 11 Mg ha-1 in ASV, but this figure was reduced in the sown covers, being 8 Mg ha-1 in sainfoin treatment, 3,7 Mg ha-1 in barley treatment, and only 1,5 Mg ha-1 in false brome treatment. Those results are used to predict the risk of erosion in long term. Moreover, soil organic carbon (SOC) increased with treatments, this is significant as it reduces soil erodibility. The increases were found both in topsoil (up to 5 cm) and more in depth, in the root zone (from 5 to 10 cm depth). From higher to lower SOC values we found the false brome (1.05%), barley (0.92%), ASV (0.79%) and sainfoin (0.71%) regarding topsoil. In the root zone (5-10 cm depth

Genetic Analysis of Seed Yield Components and its Association with Forage Production in Wild and Cultivated Species of Sainfoin

Directory of Open Access Journals (Sweden)

A. Najafipoor

2017-02-01

Full Text Available Little is known about genetic variation of seed related traits and their association with forage characters in sainfoin. In order to investigate the variation and relationship among seed yield and its components, 93 genotypes from 21 wild and cultivated species of genus Onobrychis were evaluated using a randomized complete block design with four replications at Isfahan University of Technology Research Farm, Isfahan, Iran. Analysis of variance showed that there was significant difference among genotypes, indicating existence of considerable genetic variation in this germplasm. Panicle fertility and panicle length had the most variation in cultivated and the wild genotypes, respectively. Results of correlation analysis showed that seed yield was positively correlated with number of stems per plant and number of seeds per panicle and negatively correlated with panicle length and days to 50% flowering. Seed yield had positive correlation with forage yield in wild species while this correlation was not significant in cultivated one. Cluster analysis classified the genotypes into three groups which separate wild and cultivated species. Based on principal component analysis the first component was related to seed yield and the second one was related to components of forage yield which can be used for selection of high forage and seed yielding genotypes.

Cotinus coggygria Scop.: An overview of its chemical constituents, pharmacological and toxicological potential

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Sanja Matić

2016-07-01

Full Text Available The Anacardiaceae Lindl. family comprises of many species which are used in nutrition and in traditional folk medicine for the treatment of several human diseases. Cotinus coggygria Scop. commonly known as “smoke tree”, is a commercial ornamental plant with high medicinal usages, belongs to the family Anacardiaceae. The present review provides a comprehensive report of empirical investigations on important pharmacological activities and phytochemical screening of essential oils and extracts. Relevant information was collected from scientific journals, books, and reports via library and electronic search using Medline, PubMed, Google Scholar, ScienceDirect, Web of Science, and Scopus. The plant has been extensively investigated in a broad range of studies to provide scientific evidence for folklore claims or to find new therapeutic uses. Numerous activities namely antioxidative, antibacterial, antifungal, antiviral, anticancer, antigenotoxic, hepatoprotective and anti-inflammatory have been demonstrated for all parts of these plants by in vivo and in vitro studies. Essential oils and extracts showed various pharmacological and biological properties which make them an effective remedy for various kinds of illnesses. Considering data from the literature, it could be demonstrated that C. coggygria possesses diverse bioactive properties and immense utilization in medicine, health care, cosmetics and as health supplements.

The typification of Cordia flavescens Aubl., the transfer of Firensia Scop. from Cordia L. (Cordiaceae; Boraginales) to the synonymy of Ocotea Aubl. (Lauraceae), and the identity of the species of Firensia

OpenAIRE

Feuillet,Christian

2013-01-01

Abstract Firensia Scop. was based on Cordia flavescens Aubl., a species described and illustrated from a mixed collection that Scopoli never transferred to Firensia . The genus included three additional species formally named by Rafinesque. Currently the four species are placed in three different families and none retained the epithet accepted by Scopoli or given by Rafinesque for reason of priority. A lectotype is designated for Cordia flavescens that places Firensia in the synonymy of Ocote...

The typification of Cordia flavescens Aubl., the transfer of Firensia Scop. from Cordia L. (Cordiaceae, Boraginales) to the synonymy of Ocotea Aubl. (Lauraceae), and the identity of the species of Firensia.

Science.gov (United States)

Feuillet, Christian

2013-01-01

Firensia Scop. was based on Cordia flavescens Aubl., a species described and illustrated from a mixed collection that Scopoli never transferred to Firensia. The genus included three additional species formally named by Rafinesque. Currently the four species are placed in three different families and none retained the epithet accepted by Scopoli or given by Rafinesque for reason of priority. A lectotype is designated for Cordia flavescens that places Firensia in the synonymy of Ocotea (Lauraceae).

The typification of Cordia flavescens Aubl., the transfer of Firensia Scop. from Cordia L. (Cordiaceae; Boraginales to the synonymy of Ocotea Aubl. (Lauraceae, and the identity of the species of Firensia

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Christian Feuillet

2013-05-01

Full Text Available Firensia Scop. was based on Cordia flavescens Aubl., a species described and illustrated from a mixed collection that Scopoli never transferred to Firensia. The genus included three additional species formally named by Rafinesque. Currently the four species are placed in three different families and none retained the epithet accepted by Scopoli or given by Rafinesque for reason of priority. A lectotype is designated for Cordia flavescens that places Firensia in the synonymy of Ocotea (Lauraceae.

Impact of variation in structure of condensed tannins from sainfoin (Onobrychis viciifolia) on in vitro ruminal methane production and fermentation characteristics

NARCIS (Netherlands)

Hatew, B.; Stringano, E.; Mueller-Harvey, I.; Hendriks, W.H.; Carbonero, C.H.; Smith, L.; Pellikaan, W.F.

2016-01-01

Our study investigated the effects of condensed tannins (CT) on rumen in vitro methane (CH4) production and fermentation characteristics by incubating lucerne in buffered rumen fluid in combination with different CT extracts at 0 (control), 40, 80 and 120 g CT/kg of substrate DM. Condensed tannins

The Activity of Cotinus coggygria Scop. Leaves on Staphylococcus aureus Strains in Planktonic and Biofilm Growth Forms

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Katarína Rendeková

2015-12-01

Full Text Available The purpose of this study was to detect the effectiveness of Cotinus coggygria Scop. leaves methanol extract against planktonic and biofilm growth forms of Staphylococcus aureus. The antimicrobial activity was determined by the broth microdilution test. Minimal inhibitory concentrations and minimal bactericidal concentrations were detected against two collection and ten clinical S. aureus strains. Anti-biofilm activity of the tested extract was detected using 24 h bacterial biofilm on the surface of microtiter plate wells. The biofilm inhibitory activity was evaluated visually after 24 h interaction of extract with biofilm, and the eradicating activity by a regrowth method. The tested extract showed bactericidal activity against all S. aureus strains (methicillin susceptible or methicillin resistant in concentrations ranging from 0.313 to 0.625 mg·mL−1. Biofilm inhibitory concentrations were 10-times higher and biofilm eradicating concentrations 100-times higher (8 and 32 mg·mL−1, respectively. The phytochemical analysis of C. coggygria leaves 60% methanol extract performed by LC-DAD-MS/MS revealed quercetin rhamnoside, methyl gallate, and methyl trigallate as main constituents. Results of our study indicate that C. coggygria, rich in tannins and flavonoids, seems to be a prospective topical antibacterial agent with anti-biofilm activity.

In vitro digestion of bloat-safe and bloat-causing legumes by rumen microorganisms: gas and foam production.

Science.gov (United States)

Fay, J P; Cheng, K J; Hanna, M R; Howarth, R E; Costerton, J W

1980-08-01

Leaves of three bloat-safe legumes -- birdsfoot trefoil (Lotus corniculatus L.), sainfoin (Onobrychis viciaefolia Scop.), and cicer milkvetch (Astralagus cicer L.) -- and of three bloat-causing legumes -- alfalfa (Medicago sativa L.), red clover (Trifolium pratense L.), and white clover (Trifolium repens L.) -- were incubated with strained rumen fluid or with mixed rumen fluid and solids. Gas released was measured during the early period (0 to 22 h) of this in vitro digestion. Gas volume was greater with a 1:1 (wt/vol) mixture of solid and fluid rumen contents than with rumen fluid alone. It was greater with whole and chewed leaves from the bloat-causing legumes than with whole leaves from the bloat-safe legumes. However, when leaves were homogenized, volumes of gas from bloat-causing and bloat-safe legumes were similar. More gas was released from homogenized leaves than from the same weight of whole leaves. The amount of foam produced on chewed herbage and homogenized leaves of bloat-causing legumes was greater than on those of bloat-safe legumes. These results are consistent with the rate of disintegration and digestion of legumes by rumen bacteria being an important determinant in pasture bloat. Measurement of gas produced early in in vitro digestion may provide a useful bioassay for evaluating the bloat-causing potential of legumes in breeding selections if variability of the method can be reduced.

Ocular consequences of blunt trauma in two species of nocturnal raptors (Athene noctua and Otus scops).

Science.gov (United States)

Seruca, Cristina; Molina-López, Rafael; Peña, Teresa; Leiva, Marta

2012-07-01

  To determine the type, prevalence, and prognosis of ocular and periocular lesions in free-living little owls (LO) and scops owls (SO), injured by blunt trauma.   Medical records from LO and SO with ocular or periocular lesions secondary to blunt trauma were reviewed. A complete ophthalmic examination was performed in all birds. Short protocol electroretinography (ERG) and ocular ultrasound were performed as dictated by the case.   During the study period, a total of 158 LO and 99 SO with blunt trauma were admitted. Among these, 43 LO (27.8%) and 27 SO (27.3%) had ocular or periocular lesions. Bilateral injuries (72.1% LO and 81.5% SO) were more common than unilateral. Common findings in both species were: corneal erosions/superficial ulcers, anterior and posterior uveitis, cataracts, hyphema, posterior synechia, vitreal hemorrhage, and retinal detachment. Electroretinography was performed in 32 LO and eight SO, which had posterior segment lesions or opacity of the transparent media. Normal to nonrecordable b-wave amplitudes were observed. Follow-up was available in 13 LO and 11 SO. Among these, nine LO (14 eyes) and 10 SO (17 eyes) had resolution of the clinical signs following medical treatment.   Ocular lesions are common in LO and SO injured by blunt trauma. Electroretinography is a valuable diagnostic tool to assess the severity of retinal dysfunction secondary to blunt trauma and to determine the response to medical treatment. A complete ophthalmic examination is a determining factor in the early management of trauma in these species. © 2011 American College of Veterinary Ophthalmologists.

Algunos aspectos de la biología y manejo de Digitaria sanguinalis (L. Scop. En asociación con el cultivo del arroz y otras especies adventicias Sorne aspects of the biology and rnanagernt of Digitaria sanguinalis (L. Scop. in rice crop and other weeds

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Plaza T. Guido A.

1998-12-01

Full Text Available Para el cultivo del arroz en Colombia se reportan más de 70 especies de malezas que, por orden de competitividad biológica y económica, las malezas gramíneas son las de mayor afección al cultivo. Por su nocividad, las más importantes son: Echinochloa colonum (L. Link, Oryza sativa L. (arroz rojo, Cyperus rotundus L., Rottboellia cochinchinensis U., Fimbristylis annua (Alt. Riets, Murdania nudiflora (L. Brenan, y Digitaria sanguinalis (L. Scop. La ausencia de trabajos realizados sobre Digitaria sanguinalis (L Scop., dirigidos al conocimiento de sus aspectos biológicos, el aumento en la incidencia y agresividad de la especie en los cultivos de arroz y sorgo en la zona norte del Tolima, justificó la elaboración del presente estudio, para el cual se propusieron los siguientes objetivos: identificar aspectos de
la biología y fenología, evaluar el banco de semillas y medir el efecto de la competencia de diferentes densidades de población de Digitaria sanguina lis (L. Scop. en los cultivos de arroz en Lérida, (Tolima. Los momentos de mayor suceptibilidad a la presencia de malezas en el cultivo del arroz fueron: a Germinación: D. sanguinalis completó esta fase en los tres primeros días después de humedecer el terreno, a diferencia de las semillas de arroz que requirieron dos días más. b Macollamiento: D. sanguinalis inició esta fase a los 20 días, a diferencia de las plantas de arroz que iniciaron a los 28 días. e Formación de Panícula: D. sanguina lis, la inició a los 65 días, a diferencia del arroz que inició a los 70 días. d Maduración de semillas: Las semillas de D. sanguinalis necesitaron 110 días para completar esta fase, las semillas de las plantas de arroz necesitaron 10 días más. D sanguinalis comenzó a liberar semillas a los 100 días aproximadamente. Mediante la emergencia de plántulas se
logró estimar la composición del Banco de Semilla, obteniendo los mayores porcentajes de emergencia en

The Study of Perennial Grasses and Legumes Mixtures in the Environmental Conditions Part 1: The Evolution of Mixtures Productivity from Someşelor Plateau

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Dorin-Benone Pleşa

2012-05-01

Full Text Available Lately it is a high interest in the establishing of temporary grasslands, these being considered a valuable source of fodder from the quantitative and qualitative point of view. Temporary grasslands can be established instead of degraded permanent grasslands or in arable lands. In the paper are presented the results of the research which took place in 2010 and 2011, regarding the fodder evolution of a double factor experience; A factor – mixtures (8 complex mixtures of perennial grasses and legumes and one alfalfa pure crop, considered as a witness,B factor – levels of fertilization (0N0P2O5, 60N70P2O5,120N70P2O5 kg·ha-1. In 2010 the highest productions (13.16 SU t·ha-1 were obtained at all the cycles from the 5th mixture composed from red clover and 4 species of grasses Trifolium pratense L., Dactylis glomerata L., Festulolium Asch. & Graebn., Phleum pratense L., Lolium perenne L.. In 2011, mixture number 3, recognized as being recommended for the forest steppe area and composed from Lotus corniculatus L.,Onobrychis viciifolia Scop., Dactylis glomerata L., Festuca pratensis Huds., Bromus inermis Leyss, presented the highest productions (4.82 t·ha-1 for the 60N70P2O5 and 120N70P2O5 kg·ha-1 levels of fertilization.

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Science.gov (United States)

Lewis, Tony E; Sillitoe, Ian; Andreeva, Antonina; Blundell, Tom L; Buchan, Daniel W A; Chothia, Cyrus; Cuff, Alison; Dana, Jose M; Filippis, Ioannis; Gough, Julian; Hunter, Sarah; Jones, David T; Kelley, Lawrence A; Kleywegt, Gerard J; Minneci, Federico; Mitchell, Alex; Murzin, Alexey G; Ochoa-Montaño, Bernardo; Rackham, Owen J L; Smith, James; Sternberg, Michael J E; Velankar, Sameer; Yeats, Corin; Orengo, Christine

2013-01-01

Genome3D, available at http://www.genome3d.eu, is a new collaborative project that integrates UK-based structural resources to provide a unique perspective on sequence-structure-function relationships. Leading structure prediction resources (DomSerf, FUGUE, Gene3D, pDomTHREADER, Phyre and SUPERFAMILY) provide annotations for UniProt sequences to indicate the locations of structural domains (structural annotations) and their 3D structures (structural models). Structural annotations and 3D model predictions are currently available for three model genomes (Homo sapiens, E. coli and baker's yeast), and the project will extend to other genomes in the near future. As these resources exploit different strategies for predicting structures, the main aim of Genome3D is to enable comparisons between all the resources so that biologists can see where predictions agree and are therefore more trusted. Furthermore, as these methods differ in whether they build their predictions using CATH or SCOP, Genome3D also contains the first official mapping between these two databases. This has identified pairs of similar superfamilies from the two resources at various degrees of consensus (532 bronze pairs, 527 silver pairs and 370 gold pairs).

Efeitos de hexazinone e diuron, e suas misturas, no controle de capim-de-colchão (Digitaria sanguinalis (L. Scop em cana-de-açúcar (Saccharum spp Effects of hexazinone and diuron and mixtures on crabgrass (Digitaria sanguinalis (L. Scop control on sugarcane (Saccharum spp

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L. S. P. Cruz

1983-06-01

Full Text Available Foi conduzido em 1976 /77, um experimento de campo em área do Centro de Tecnologia da Copersucar, em Piracicaba, SP , com a finalidade de se conhecer o efeito dos herbicidas hexazinone e diuron , assim como o de suas misturas, no controle do capim-de -colchão (Digitaria sanguinalis (L. Scop em avançado estádio de desenvolvimento vegetativo infestando cultura de cana-deaçúcar (Saccharum spp. Os tratamentos constaram da aplicação pós - emergente de hexazinone a 0,30, 0,35, 0,45 e 0, 65 kg/h a; de diuro na 0, 88 , 1, 20 e 2, 50 kg/h a; de hexazinone -i - diuron a 0,30 0,88, 0,35 + 1 , 2 0 e 0 , 4 5 + 1 , 3 6 kg / ha . Foram incluídos mais dois tratamentos com herbicidas ( ter - bacila 0,9 6 kg/ ha e metribuzin a 1,5 0 kg/ ha e um sem herbicida, mantidos empreno limpo com o auxílio de enxada. Esses 13 tratamentos foram distribuídos em blocos ao acaso, com quatro repetições. Foram determinados também os efeitos dos tratamentos sobre a produção de cana -de-açúcar no campo e sobre suas características tecnológicas (Brix, Pol, Pureza, Fibra. Os melhores resultados de controle da gramínea , aos 15 dias da aplicação dos herbicidas , foram obtidos com a mistura de hexazinone a 0, 45 kg/h a com diuron a 1, 36 kg/h a. Hexazinon e a 0,6 4 kg /h a, aplicado isolado, também apresentou bons resultados de controle. Nos tratamentos com hexazinone apareceram sintomas de fitotoxicidade na cana-de-açúcar, os quais desapareceram posteriormente, sem interferir na produção. Os demais tratamentos também não foram prejudiciais à cana de-açúcar.A field experiment was carried out at the Centre of Technology of Copers ucar, Piracicaba , SP, to know the action of hexazinone and diuron and mixtures on crab grass (Digitaria sanguinali s (L . Scop control, at advanced stage of development in sugarcane crop. Treatments were post -emergence aplication of hexazinone at 0,30; 0,35; 0,45 and 0,64 kg/ha; diuron at 0,88; 1,20 ; 1,36 and 2, 50 kg/h a

SMART core protection system design

International Nuclear Information System (INIS)

Lee, J. K.; Park, H. Y.; Koo, I. S.; Park, H. S.; Kim, J. S.; Son, C. H.

2003-01-01

SMART COre Protection System(SCOPS) is designed with real-tims Digital Signal Processor(DSP) board and Network Interface Card(NIC) board. SCOPS has a Control Rod POSition (CRPOS) software module while Core Protection Calculator System(CPCS) consists of Core Protection Calculators(CPCs) and Control Element Assembly(CEA) Calculators(CEACs) in the commercial nuclear plant. It's not necessary to have a independent cabinets for SCOPS because SCOPS is physically very small. Then SCOPS is designed to share the cabinets with Plant Protection System(PPS) of SMART. Therefor it's very easy to maintain the system because CRPOS module is used instead of the computer with operating system

Antiproliferative Properties Against Human Breast, Cervical and Ovarian Cancer Cell Lines, and Antioxidant Capacity of Leaf Aqueous Ethanolic Extract from Cotinus coggygria Scop.

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Gospodinova Z.

2017-10-01

Full Text Available Cotinus coggygria Scop. leaf aqueous ethanolic extract was examined for its in vitro antiproliferative and antioxidant activity. Antiproliferative effect was assessed on four human gynecological cancer cell lines: breast (MCF7, T47D, cervical (HeLa and ovarian (A2780 and compared to the cell growth inhibitory effect on non-cancerous breast epithelial cell line MCF10A using MTT cell proliferation assay. Radical scavenging assay with DPPH was applied to evaluate antioxidant potential of the extract. The obtained results showed that the herb inhibited cell growth of all of the tested cancer cell lines and the highest was the cytostatic effect on A2780 cells with a half maximal inhibitory concentration (IC50 value of 30.8 μg/ml. For the other cell lines the IC50 values were in the range of 55-122.7 μg/ml. Additionally, the extract exerted considerably weaker reduction in cell proliferation of the non-cancerous cell line MCF10A compared to cancer cells, which indicates for antiproliferative selectivity. C. coggygria extract showed high free radical scavenging activity with an IC50 value of 11.2 μg/ml. The obtained data provide evidence for pharmacological potential of the tested extract and future more detailed studies concerning the molecular mechanisms of the anticancer effect of the herb are needed.

Attelabus Nitens (Scop. – an Abundant but Biologically Little Known Species from the Family of Attelabidae (Coleoptera

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Zdeňka Urbanová

2016-01-01

Full Text Available The study deals with the biology of Attelabus nitens (Scop. in the Brno region. In the growing season of 2014, 35 field inspections were made at 10 sites in the intervals of three‑to‑seven days. Leaf rolls were found on Quercus petraea, Q. dalechampii, Q. robur, Q. pubescens and Q. cerris, rarely on Castanea sativa. Hibernating in the shed leaf rolls are larvae of the second instar. These pupate in the rolls during the second half of April and beginning of May. At the turn of April and May, beetles fly onto host woody plants of the 1st age class. They damage about 30 cm2 of leaves in two months. Females create about 30 leaf rolls into which they lay 1 to 5 (on average 1.1 eggs. The species develops through two larval instars, which damage 1.7 to 2.3 cm2 of leaves and come of age towards the end of the growing season. On the primary shoots of oaks (with relatively large leaves, the females rolled below‑average sized leaves. On the secondary shoots (with relatively small leaves, they rolled leaves of average to above‑average size. The female gnaws a deep mine into the main vein (in a third of its length from the adaxial side first. Then she makes a cross cut into the blade from both sides up to the main vein, which is damaged only on the surface. Into thicker sections of veins she bites out (mainly from the abaxial side on average 350 cross cuts. Only then, the female folds the wilted leaf part adaxially along the main vein and after having laid an egg (eggs, she rolls the blade from the end into a transversal cylindrical roll. On the leaves of Quercus spp. with an average area of 14.3 cm2, the females roll on average 11.9 cm2 (83.2 %. During the growing period, 36 % of individuals died in the leaf rolls on primary shoots and 28 % of individuals died in the leaf rolls on secondary shoots.

Automatic structure classification of small proteins using random forest

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Hirst Jonathan D

2010-07-01

Full Text Available Abstract Background Random forest, an ensemble based supervised machine learning algorithm, is used to predict the SCOP structural classification for a target structure, based on the similarity of its structural descriptors to those of a template structure with an equal number of secondary structure elements (SSEs. An initial assessment of random forest is carried out for domains consisting of three SSEs. The usability of random forest in classifying larger domains is demonstrated by applying it to domains consisting of four, five and six SSEs. Results Random forest, trained on SCOP version 1.69, achieves a predictive accuracy of up to 94% on an independent and non-overlapping test set derived from SCOP version 1.73. For classification to the SCOP Class, Fold, Super-family or Family levels, the predictive quality of the model in terms of Matthew's correlation coefficient (MCC ranged from 0.61 to 0.83. As the number of constituent SSEs increases the MCC for classification to different structural levels decreases. Conclusions The utility of random forest in classifying domains from the place-holder classes of SCOP to the true Class, Fold, Super-family or Family levels is demonstrated. Issues such as introduction of a new structural level in SCOP and the merger of singleton levels can also be addressed using random forest. A real-world scenario is mimicked by predicting the classification for those protein structures from the PDB, which are yet to be assigned to the SCOP classification hierarchy.

Histaminergic and cholinergic neuron systems in the impairment of human thermoregulation during motion sickness.

Science.gov (United States)

Nobel, Gerard; Tribukait, Arne; Mekjavic, Igor B; Eiken, Ola

2010-05-31

Motion sickness (MS) exaggerates body cooling during cold-water immersion. The aim of the present study was to investigate whether such MS-induced predisposition to hypothermia is influenced by two anti-MS drugs: the histamine-receptor blocker dimenhydrinate (DMH) and the muscarine-receptor blocker scopolamine (Scop). Nine healthy male subjects were immersed in 15 degrees C water for a maximum of 90min in five conditions: (1) control (CN): no medication, no MS provocation; (2) MS-control (MS-CN): no medication, MS provocation; (3) MS-placebo (MS-P): placebo DMH and placebo Scop, MS provocation; (4) MS-DMH: DMH and placebo Scop, MS provocation; (5) MS-Scop: Scop and placebo DMH, MS provocation. MS was induced by use of a rotating chair. Throughout the experiments rectal temperature (T(re)), the difference in temperature between the non-immersed right forearm and third finger (T(ff)) as an index of peripheral vasoconstriction, and oxygen uptake (VO(2)) as a measure of shivering thermogenesis, were recorded. DMH and Scop were similarly efficacious in ameliorating nausea. The fall in T(re) was greater in the MS-CN and MS-P conditions than in the CN condition. DMH, but not Scop, prevented the MS-induced increase in body-core cooling. MS attenuated the cold-induced vasoconstriction, an effect which was fully prevented by DMH but only partially by Scop. MS provocation did not affect VO(2) in any condition. The results suggest that the MS-induced predisposition to hypothermia is predominantly mediated by histaminergic mechanisms and that DMH might be useful in conjunction with maritime accidents or other scenarios where exposure to cold and MS are imminent features. Copyright (c) 2010 Elsevier Inc. All rights reserved.

Investigation of antimicrobial and antioxidant activities of cirsium arvensis (l.) scop from district bhimber of azad jammu and kashmir

International Nuclear Information System (INIS)

Maqbool, M.; Ajaib, M.; Ishtiaq, M.; Mushtaq, W.; Azam, S.

2017-01-01

Plants are part and parcel of human life. The current research was designed to explore ethnomedicinal importance of ''Cirsium arvensis (L.) Scop.'' (family Asteraceae) from Samahni area of District Bhimber Azad Kashmir, Pakistan. The maceration protocol was applied using four solvents of different polarity and highest yield was found in water extract for leaf (9.85 mg) and for stem (8.50 mg) from 250 g dry wt of sample. Leaf extract produced significant quantity of biochemicals: saponin, terpnoids, alkaloids and tannins. The antimicrobial activity was explored using four bacterial strains and four fungal species. Petroleum extract (P.E.) macerate depicted the highest antibacterial and antimycotic activity. P.E. extract of leaf showed significant zone of inhibition (Z.I.) nearly 76+-0.4 mm which was the most promising. For antimycotic, highest ZI was calculated for cholorformic extract of leaf (79+-0.2 mm) against Aspergillus niger, followed by 77+-0.7 mm for Fusarium oxysporum. Minimum inhibitory concentration (M.I.C.) was also determined for different bacterial and fungal strains. It was found 0.12+-0.05 M.I.C. for E. coli and followed by 0.2 0.3 mm for B. subtilis. For antimycotic analysis, M.I.C. was determined significant for Aspergillus niger (0.05+-0.3). In the study, activity index (A.I.) for bacteria was highest (4.22) for P.E. of leaf extract against E. coli and for fungi it was highest (3.59) for leaf chloroform extract against A. niger. The plant crude extract was also tested for total antioxidant activity (TAA) and it depicted 4.70+-10.8 value for aqueous macerate. Other fractions also do have good range of TAA. In total phenolic content (TPC) analysis, highest TPC was determined for methanol extract of stem of for concentration of 125 mL with value of 78.93+-0.3. These findings proved that plant is good source of herbal medication and it might be good source of novel drug discovery and development against bacteria and fungi. (author)

In vitro ruminal fermentation characteristics and utilisable CP supply of sainfoin and birdsfoot trefoil silages and their mixtures with other legumes.

Science.gov (United States)

Grosse Brinkhaus, A; Wyss, U; Arrigo, Y; Girard, M; Bee, G; Zeitz, J O; Kreuzer, M; Dohme-Meier, F

2017-04-01

The extensive protein degradation occurring during ensiling decreases the nutritive value of silages, but this might be counteracted by tannins. Therefore, silages from two legume species containing condensed tannins (CT) - sainfoin (SF) and birdsfoot trefoil (two cultivars: birdsfoot trefoil, cv. Bull (BTB) and birdsfoot trefoil, cv. Polom) - were compared for their in vitro ruminal fermentation characteristics. The effect of combining them with two CT-free legume silages (lucerne (LU) and red clover (RC)) was also determined. The supply of duodenally utilisable CP (uCP) in the forages was emphasised. The legumes were each harvested from three field sites. After 24 h of wilting on the field, the legumes were ensiled in laboratory silos for 86 days. Proximate constituents, silage fermentation characteristics, CT content and CP fractions were determined. Subsequently, silage samples and 1 : 1 mixtures of the CT-containing and CT-free silages were incubated for 24 h in batch cultures using ruminal fluid and buffer (1 : 2, v/v). Each treatment was replicated six times in six runs. The effects on pH, ammonia and volatile fatty acid concentrations, protozoal counts, and total gas and methane production were determined. uCP content was calculated by considering the CP in the silage and the ammonia in the incubation fluid from treatments and blanks. Statistical evaluation compared data from single plants alone and together with that from the mixtures. Among treatments, SF silage contained the least CP and the most CT. The non-protein nitrogen content was lower, favouring neutral detergent soluble and insoluble protein fractions, in the SF and RC silages. Absolute uCP content was lowest in SF and SF mixtures, although the ratio to total CP was the highest. In comparison with LU, the ammonia concentration of the incubation fluid was lower for SF, RC and BTB and for the mixture of SF with LU. The total gas and methane production was similar among the treatments, and the

Wage inequality in workers’ cooperatives and conventional firms

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Nathalie Magne

2017-12-01

Full Text Available The author evaluates the effects of democratic worker participation on the income distribution within firms. Wage inequality in French workers’ cooperatives (called SCOPs versus traditional firms is measured using the 2001-2012 panel DADS dataset which includes all French firms. The author finds significantly lower inequality in SCOPs, in line with the previous empirical literature. Going into more detail, it appears that inequality is reduced at the top of the distribution and specifically regarding qualification-based inequalities; the gender gap and the advantage of senior workers are not lower in SCOPs. These findings contribute to the literature on Labor-Managed Firms, as well as to the broader debate on rising wage inequality in developed countries.The author evaluates the effects of democratic worker participation on the income distribution within firms. Wage inequality in French workers’ cooperatives (called SCOPs versus traditional firms is measured using the 2001-2012 panel DADS dataset which includes all French firms. The author finds significantly lower inequality in SCOPs, in line with the previous empirical literature. Going into more detail, it appears that inequality is reduced at the top of the distribution and specifically regarding qualification-based inequalities; the gender gap and the advantage of senior workers are not lower in SCOPs. These findings contribute to the literature on Labor-Managed Firms, as well as to the broader debate on rising wage inequality in developed countries.

Linear programming models with planned lead times for supply chain operations planning

NARCIS (Netherlands)

Spitter, J.M.; Hurkens, C.A.J.; Kok, de A.G.; Lenstra, J.K.; Negenman, E.G.

2005-01-01

This paper contributes to the development of models for capacity constrained Supply Chain Operations Planning (SCOP). We focus on production environments with arbitrary supply chain structures. The demand for the end items is assumed to be exogenously determined. We solve the SCOP problem with

Improvement of Forage Quantity and Quality in Corn-Legumes Intercropping with Nitroxin Biofertilizer Application in Double Cropping

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Abdollah Javanmard

2018-05-01

Full Text Available Forage quantity and quality in simultaneous cropping of maize with vetch (Vicia villosa, grass pea (Lathyrus sativus, sainfoin (Onobrychis vicifolia, berseem clover (Trifolium alexanderinum L., studied by experiment as randomized complete block design (RCBD with 14 treatments and three replications at the Faculty of Agriculture, University of Maragheh during 2015. The treatments were monocultures of maize (SC 704, Vetch, Grass pea, Sainfoin, Berseem clover and intercropping maize with each legume in inoculated and non-inoculated with nitroxin biofertilizer. The results showed that the highest and lowest forage yield were obtained in maize (inoculation+ vetch intercropping and sainfoin monoculture, respectively. Also, the highest (277.5 g.kgDM-1 and the lowest (60.60 g.kgDM-1 crude protein were achieved in vetch and maize monoculture (without inoculation, respectively. In addition to, the highest acid detergent fiber (ADF and neutral detergent fiber (NDF values were obtained in monoculture of maize (no -inoculation. The lowest ADF and NDF values were obtained in vetch monoculture and intercropping of maize (inoculation + vetch. The highest values of DMI, DDM, RFV, NEL and TDN was observed in vetch monocultures. Also, between intercropping patterns, the highest values of these indices were obtained in intercropping of maize (inoculation + vetch. Generally, the results of this study exhibited that the effects of vetch on the quality and quantity of forages was higher than other legumes in intercropping patterns.

Development of Uncertainty Analysis Method for SMART Digital Core Protection and Monitoring System

International Nuclear Information System (INIS)

Koo, Bon Seung; In, Wang Kee; Hwang, Dae Hyun

2012-01-01

The Korea Atomic Energy Research Institute has developed a system-integrated modular advanced reactor (SMART) for a seawater desalination and electricity generation. Online digital core protection and monitoring systems, called SCOPS and SCOMS respectively were developed. SCOPS calculates minimum DNBR and maximum LPD based on the several online measured system parameters. SCOMS calculates the variables of limiting conditions for operation. KAERI developed overall uncertainty analysis methodology which is used statistically combining uncertainty components of SMART core protection and monitoring system. By applying overall uncertainty factors in on-line SCOPS/SCOMS calculation, calculated LPD and DNBR are conservative with a 95/95 probability/confidence level. In this paper, uncertainty analysis method is described for SMART core protection and monitoring system

SOLID participatory research from Denmark: Use of herbs in pastures for dairy cows: Farmers’ experience, pasture coverage analyses, and literature survey of Danish research results

DEFF Research Database (Denmark)

Kudahl, Anne Braad; Karydi, Emmanouela; Vaarst, Mette

2015-01-01

chicory and salad burnet. In both fields, birdsfoot trefoil, yellow sweet clover, Sainfoin and starflower never established although the originally seed mixture had a quite high content of their seeds. The plant coverage analyses of the fields which were one to six years old, generally, dandelions...

USSR and Eastern Europe Scientific Abstracts, Chemistry, Number 58

Science.gov (United States)

1978-01-20

fertilization. Miron- ovskaya 808 winter wheat variety was planted in 1972-1974, in rotation after sainfoin. Production conditions of planting and cultivation ...METHODOLOGICAL PRINCIPLES OF PESTICIDE ECOTOXICOLOGY Moscow KHIMIYA V SEL’SKOM KHOZYAYSTVE in Russian No 6, 1977 pp 67-73 SOKOLOV, M. S., Candidate

Concepts to increase the seasonal coefficient of performance of an air-water heat pump: Comparison according to costs and benefits; Konzepte zur Erhoehung der saisonalen Leistungszahl einer Luft-Wasser-Waermepumpe. Vergleich hinsichtlich Kosten und Nutzen

Energy Technology Data Exchange (ETDEWEB)

Mader, Gunda [Danfoss A/S, Nordborg (Denmark); Tiedemann, Thomas [Danfoss GmbH, Offenbach (Germany); Palm, Bjoern [KTH, Stockholm (Sweden)

2012-07-01

The regulation EN 14825 defines three climate profiles for the calculation of the seasonal coefficient of performance (SCOP) of an air-water heat pump. Nine key figures for the evaluation of a system result together with three possible profiles of the water intake temperature. In particular, the combination of cold climate profile and enhanced intake temperatures is particularly critical with respect to the achievable SCOP. With the classic system design with two heat exchangers, a compressor and an expansion valve, sufficiently high SCOP values can often no longer be achieved, or the heat pump cannot be operated no longer due to an enhanced outlet temperatures of the refrigerant at the compressor and at low ambient temperatures. Different concepts concerning the system design, component selection and control are known in order to extend the operational area of a heat pump to large differences between the temperature of the heat source and the temperature of the heat sink as well as to achieve simultaneously enhanced SCOP values. The numerical screening method is used in order to compare several concepts of this type by means of the different SCOP values as well as the costs attributable to the plant. For this, the Pareto curves of the optimal combination of the heat transfer surfaces are determined taking into account the condition of a limited refrigerant temperature at the compressor outlet. Different refrigerants also are included in the analysis. The impact of different control parameters and control strategies as well as the different choice of components are investigated by means of a sensitivity analysis.

Etologická studie zvířat chovaných společně v nočním pavilonu v zoo Olomouc

OpenAIRE

GRÖGEROVÁ, Simona

2013-01-01

Species Red-rumped Agouti (Dasyprocta leporina), Fennec Fox (Vulpes zerda), Rodrigues Flying Fox (Pteropus rodricensis) Tawny Frogmouth (Podargus strigoides) Bolivian Night Monkey (Aotus azarae ssp. boliviensis) and Common Scops-owl (Otus scops) are breed together in reversed light/dark cycle exhibit in zoo Olomouc. Most of these species have similar environmental living conditions in the wild, but they are zoogeographically heterogeneous. The purpose of this study was to assess success of th...

Preliminary Uncertainty Analysis for SMART Digital Core Protection and Monitoring System

International Nuclear Information System (INIS)

Koo, Bon Seung; In, Wang Kee; Hwang, Dae Hyun

2012-01-01

The Korea Atomic Energy Research Institute (KAERI) developed on-line digital core protection and monitoring systems, called SCOPS and SCOMS as a part of SMART plant protection and monitoring system. SCOPS simplified the protection system by directly connecting the four RSPT signals to each core protection channel and eliminated the control element assembly calculator (CEAC) hardware. SCOMS adopted DPCM3D method in synthesizing core power distribution instead of Fourier expansion method being used in conventional PWRs. The DPCM3D method produces a synthetic 3-D power distribution by coupling a neutronics code and measured in-core detector signals. The overall uncertainty analysis methodology which is used statistically combining uncertainty components of SMART core protection and monitoring system was developed. In this paper, preliminary overall uncertainty factors for SCOPS/SCOMS of SMART initial core were evaluated by applying newly developed uncertainty analysis method

The Protective Role of Selenium on Scopolamine-Induced Memory Impairment, Oxidative Stress, and Apoptosis in Aged Rats: The Involvement of TRPM2 and TRPV1 Channels.

Science.gov (United States)

Balaban, Hasan; Nazıroğlu, Mustafa; Demirci, Kadir; Övey, İshak Suat

2017-05-01

Inhibition of Ca 2+ entry into the hippocampus and dorsal root ganglion (DRG) through inhibition of N-methyl-D-aspartate (NMDA) receptor antagonist drugs is the current standard of care in neuronal diseases such as Alzheimer's disease, dementia, and peripheral pain. Oxidative stress activates Ca 2+ -permeable TRPM2 and TRPV1, and recent studies indicate that selenium (Se) is a potent TRPM2 and TRPV1 channel antagonist in the hippocampus and DRG. In this study, we investigated the neuroprotective properties of Se in primary hippocampal and DRG neuron cultures of aged rats when given alone or in combination with scopolamine (SCOP). Thirty-two aged (18-24 months old) rats were divided into four groups. The first and second groups received a placebo and SCOP (1 mg/kg/day), respectively. The third and fourth groups received intraperitoneal Se (1.5 mg/kg/ over day) and SCOP + Se, respectively. The hippocampal and DRG neurons also were stimulated in vitro with a TRPV1 channel agonist (capsaicin) and a TRPM2 channel agonist (cumene hydroperoxide). We found that Se was fully effective in reversing SCOP-induced TRPM2 and TRPV1 current densities as well as errors in working memory and reference memory. In addition, Se completely reduced SCOP-induced oxidative toxicity by modulating lipid peroxidation, reducing glutathione and glutathione peroxidase. The Se and SCOP + Se treatments also decreased poly (ADP-ribose) polymerase activity, intracellular free Ca 2+ concentrations, apoptosis, and caspase 3, caspase 9, and mitochondrial membrane depolarization values in the hippocampus. In conclusion, the current study reports on the cellular level for SCOP and Se on the different endocytotoxic cascades for the first time. Notably, the research indicates that Se can result in remarkable neuroprotective and memory impairment effects in the hippocampal neurons of rats. Graphical abstract Possible molecular pathways of involvement of selenium (Se) in scopolamine (SCOP) induced

Dynamic Ocular Surface and Lacrimal Gland Changes Induced in Experimental Murine Dry Eye

Science.gov (United States)

Xiao, Bing; Wang, Yu; Reinach, Peter S.; Ren, Yueping; Li, Jinyang; Hua, Shanshan; Lu, Huihui; Chen, Wei

2015-01-01

Dry eye disease can be a consequence of lacrimal gland insufficiency in Sjögren’s Syndrome or increased tear film evaporation despite normal lacrimal gland function. To determine if there is a correlation between severity effects in these models and underlying pathophysiological responses, we compared the time dependent changes in each of these parameters that occur during a 6 week period. Dry eye was induced in 6-week-old female C57BL/6 mice by exposing them to an Intelligently Controlled Environmental System (ICES). Sixty mice were housed in ICES for 1, 2, 4 and 6 weeks respectively. Twelve were raised in normal environment and received subcutaneous injections of scopolamine hydrobromide (SCOP) 3 times daily for 5 days. Another sixty mice were housed in a normal environment and received no treatment. Corneal fluorescein staining along with corneal MMP-9 and caspase-3 level measurements were performed in parallel with the TUNEL assay. Interleukin-17(IL-17), IL-23, IL-6, IL-1, TNF-α, IFN-γ and TGF-β2 levels were estimated by real-time PCR measurements of conjunctival and lacrimal gland samples (LGs). Immunohistochemistry of excised LGs along with flow cytometry in cervical lymph nodes evaluated immune cell infiltration. Light and transmission electron microscopy studies evaluated LGs cytoarchitectural changes. ICES induced corneal epithelial destruction and apoptosis peaked at 2 weeks and kept stable in the following 4 weeks. In the ICES group, lacrimal gland proinflammatory cytokine level increases were much lower than those in the SCOP group. In accord with the lower proinflammatory cytokine levels, in the ICES group, lacrimal gland cytosolic vesicular density and size exceeded that in the SCOP group. ICES and SCOP induced murine dry eye effects became progressively more severe over a two week period. Subsequently, the disease process stabilized for the next four weeks. ICES induced local effects in the ocular surface, but failed to elicit lacrimal gland

Dynamic ocular surface and lacrimal gland changes induced in experimental murine dry eye.

Science.gov (United States)

Xiao, Bing; Wang, Yu; Reinach, Peter S; Ren, Yueping; Li, Jinyang; Hua, Shanshan; Lu, Huihui; Chen, Wei

2015-01-01

Dry eye disease can be a consequence of lacrimal gland insufficiency in Sjögren's Syndrome or increased tear film evaporation despite normal lacrimal gland function. To determine if there is a correlation between severity effects in these models and underlying pathophysiological responses, we compared the time dependent changes in each of these parameters that occur during a 6 week period. Dry eye was induced in 6-week-old female C57BL/6 mice by exposing them to an Intelligently Controlled Environmental System (ICES). Sixty mice were housed in ICES for 1, 2, 4 and 6 weeks respectively. Twelve were raised in normal environment and received subcutaneous injections of scopolamine hydrobromide (SCOP) 3 times daily for 5 days. Another sixty mice were housed in a normal environment and received no treatment. Corneal fluorescein staining along with corneal MMP-9 and caspase-3 level measurements were performed in parallel with the TUNEL assay. Interleukin-17(IL-17), IL-23, IL-6, IL-1, TNF-α, IFN-γ and TGF-β2 levels were estimated by real-time PCR measurements of conjunctival and lacrimal gland samples (LGs). Immunohistochemistry of excised LGs along with flow cytometry in cervical lymph nodes evaluated immune cell infiltration. Light and transmission electron microscopy studies evaluated LGs cytoarchitectural changes. ICES induced corneal epithelial destruction and apoptosis peaked at 2 weeks and kept stable in the following 4 weeks. In the ICES group, lacrimal gland proinflammatory cytokine level increases were much lower than those in the SCOP group. In accord with the lower proinflammatory cytokine levels, in the ICES group, lacrimal gland cytosolic vesicular density and size exceeded that in the SCOP group. ICES and SCOP induced murine dry eye effects became progressively more severe over a two week period. Subsequently, the disease process stabilized for the next four weeks. ICES induced local effects in the ocular surface, but failed to elicit lacrimal gland

Stimulation des défenses naturelles par l’application d’un Lombricompost. Effet sur les paramètres populationnels d’Aphis fabae scop. (Homoptera: Aphididae et la qualité Phytochimique de la fève

Directory of Open Access Journals (Sweden)

Zahr-Eddine Djazouli

2017-06-01

Full Text Available Chaichi, W. Djazouli, Z. Djemai, I. Abdelkader, S. Ribera, I. and Nancé, J. 2017. Stimulation of natural defences by the application of lombricompost. Effect on the Aphis fabae scop. (Homoptéra: Aphididae population and phytochemical quality of faba bean. Lebanese Science Journal, 18(1: 81-97. The integrated production in durable agriculture aims to improve the efficiency of biological inputs through formulations extending the remanence in the field or the incorporation of synergistic products which, being themselves nontoxic at used quantities, increase the protective action of the viabe cultivations. The lombricultivation represents an appropriate technology to enhance the value of the farm residues and manage, on a long term basis, plant health. The study focused on the stimulation of natural defenses of bean through the use of a lombricompost dilutions produced in two different seasons. The effect of lombricompost has been evaluated based on the Aphis fabae population density in relation to the phytochemical quality of the nutritional support. Variations of biochemical molecule contents and major mineral elements during the leaf expanding phase have been noticed. These changes affect the biological performance as well as the density of A. fabae population. The results allowed detecting a positive effect of lombricompost on plant chemistry. On the other hand, enrichment in proteins and proline under the effect of strong dilution was noticed. Finally, results related to the repressive effect of the different forms of lombricompost showed a marked difference between treatments and the control, with a stronger effect on the winged forms. Results also indicated some variability of the Aphis Fabae populational structure in relation to the phytochemical enrichments established by the application of lombricompost.

Resistance delaying strategies on UK sheep farms: A cost benefit analysis.

Science.gov (United States)

Learmount, Jane; Glover, Mike J; Taylor, Mike A

2018-04-30

UK guidelines for the sustainable control of parasites in sheep (SCOPS) were formulated with the primary aim of delaying development of anthelmintic resistance (AR) on UK sheep farms. Promoting their use requires the engagement and commitment of stakeholders. An important driver for behavioural change in sheep farmers is evidence of economic benefits. A recent evaluation of SCOPS guidance in practice demonstrated a significant reduction in anthelmintic use, suggesting economic benefits through a direct reduction in product and labour costs. However, in order to maintain production, a range of alternative control strategies are advised, resulting in additional costs to farmers and so a full cost benefit analysis of best practice management was undertaken. We allocated financial values to the management recommendations described in the SCOPS technical manual. Benefits were calculated using data for production variables and anthelmintic use measured during studies to evaluate the effect of SCOPS recommendations on 16 UK sheep farms and from other published work. As SCOPS control is not prescriptive and a range of different diagnostics are available, best and worst case scenarios were presented, comparing the cheapest methods (e.g. egg counts without larval culture) and management situations (e.g closed flocks not requiring quarantine treatments) with the most laborious and expensive. Simulations were run for farms with a small, medium or large flock (300; 1000; 1900 ewes) as well as comparing scenarios with and without potential production benefits from using effective wormers. Analysis demonstrated a moderate cost for all farms under both scenarios when production benefits were not included. A cost benefit was demonstrated for medium and large farms when production benefits were included and the benefit could be perceived as significant in the case of the large farms for the best case scenario (>£5000 per annum). Despite a significant potential reduction in

Occurence, spread and possibilities of invasive weeds control in sugar beet

Directory of Open Access Journals (Sweden)

Konstantinović Branko I.

2006-01-01

Full Text Available Floristically rich and diverse weed comunity of sugar beet is in our country represented by 150 weed species. They are not all equaly significant in weediness of this crop. Only a limited number of them participate in weed comunity composition. These are: Abuthilon theophrasti Medic., Ambrosia artemisiifolia L., Amaranthus retroflexus L., Chenopodium album L., Cirsium arvense (L Scop., Convolvulus arvensis L., Cynodon dactylon (L Pers. Digitaria sanguinalis (L Scop., Hibiscus trionum L., Rubus caesius L. Echinochloa crus-gall L., Polygonum aviculare L., P. lapathifolium L., P. persicaria L., Setaria glauca (L P. B., S. viridis (L P. B., Solanum nigrum L. and Sorghum halepense (L Pers. In shooting period up to 4-8 weeks upon emergence, sugar beet is under the haviest harmfull inluence of weeds, especially invasive ones such as: Abuthilon theophrasti Medic. Ambrosia artemisiifolia L., Cirsium arvense (L Scop., Iva xanthifolia L. Sorghum halepense (L Pers. and Xanthium strumarium L. Sugar beet growing requires intensive cultural practices, i.e. basic and additional tillage and cultivation. Due to the widening of weed problems, frequent herbicide use in several applications is needed in the longer time period.

Hourly simulation of a Ground-Coupled Heat Pump system

Science.gov (United States)

Naldi, C.; Zanchini, E.

2017-01-01

In this paper, we present a MATLAB code for the hourly simulation of a whole Ground-Coupled Heat Pump (GCHP) system, based on the g-functions previously obtained by Zanchini and Lazzari. The code applies both to on-off heat pumps and to inverter-driven ones. It is employed to analyse the effects of the inverter and of the total length of the Borehole Heat Exchanger (BHE) field on the mean seasonal COP (SCOP) and on the mean seasonal EER (SEER) of a GCHP system designed for a residential house with 6 apartments in Bologna, North-Center Italy, with dominant heating loads. A BHE field with 3 in line boreholes is considered, with length of each BHE either 75 m or 105 m. The results show that the increase of the BHE length yields a SCOP enhancement of about 7%, while the SEER remains nearly unchanged. The replacement of the on-off heat pump by an inverter-driven one yields a SCOP enhancement of about 30% and a SEER enhancement of about 50%. The results demonstrate the importance of employing inverter-driven heat pumps for GCHP systems.

The development of anthelmintic resistance with best practice control of nematodes on commercial sheep farms in the UK.

Science.gov (United States)

Learmount, Jane; Stephens, Nathalie; Boughtflower, Valerie; Barrecheguren, Alba; Rickell, Kayleigh

2016-10-15

Antimicrobial resistance threatens the effective prevention and treatment of an ever-increasing range of infections. The widespread development of anthelmintic resistance is a major global issue affecting the effective control of parasite diseases in grazing livestock production. Sustainable control strategies that reduce dependence on antimicrobials have the potential to slow the further development of resistance but there is little data on the effect of control strategies on resistance development in the field. This report documents a study undertaken to measure the temporal effect of the UK sustainable control of parasites in sheep (SCOPS) guidelines on the development of anthelmintic resistance. Farms carrying out SCOPS or traditional worm control (TRADITIONAL) were tested for resistance to the benzimidazole and imidazothiazole anthelmintics in vitro using a discriminating dose (dd) larval development test (LDT) in year 1 and then 7 years later. In years 5 and 7, resistance was also measured using a dose-response LDT assay. There was a significant increase in Teladorsagia survivors at the benzimidazole dd assay between year 1 and year 7 for both treatment groups, but the increase in survivors was greater for the farms carrying out their traditional worm control compared to the SCOPS farms. There was also a significant difference between benzimidazole dd results generated across years for Trichostrongylus, but the year and treatment interaction was not significant. Only one of the farm Teladorsagia populations had survivors in the imidazothiazole dd assay in years 1 and 7 and none of the Trichostrongylus populations survived in year 1 compared to isolates from three of the farms in year 7. Dose-response data showed a significant effect for time for both the benzimidazole and imidazothiazole anthelmintics and the increase was again significantly higher for the Teladorsagia populations in the TRADITIONAL group compared to the SCOPS group. This data suggests an

D-cycloserine in prelimbic cortex reverses scopolamine-induced deficits in olfactory memory in rats.

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Marta Portero-Tresserra

Full Text Available A significant interaction between N-methyl-D-aspartate (NMDA and muscarinic receptors has been suggested in the modulation of learning and memory processes. The present study further investigates this issue and explores whether d-cycloserine (DCS, a partial agonist at the glycine binding site of the NMDA receptors that has been regarded as a cognitive enhancer, would reverse scopolamine (SCOP-induced amnesia in two olfactory learning tasks when administered into the prelimbic cortex (PLC. Thus, in experiment 1, DCS (10 µg/site was infused prior to acquisition of odor discrimination (ODT and social transmission of food preference (STFP, which have been previously characterized as paradigms sensitive to PLC muscarinic blockade. Immediately after learning such tasks, SCOP was injected (20 µg/site and the effects of both drugs (alone and combined were tested in 24-h retention tests. To assess whether DCS effects may depend on the difficulty of the task, in the STFP the rats expressed their food preference either in a standard two-choice test (experiment 1 or a more challenging three-choice test (experiment 2. The results showed that bilateral intra-PLC infusions of SCOP markedly disrupted the ODT and STFP memory tests. Additionally, infusions of DCS alone into the PLC enhanced ODT but not STFP retention. However, the DCS treatment reversed SCOP-induced memory deficits in both tasks, and this effect seemed more apparent in ODT and 3-choice STFP. Such results support the interaction between the glutamatergic and the cholinergic systems in the PLC in such a way that positive modulation of the NMDA receptor/channel, through activation of the glycine binding site, may compensate dysfunction of muscarinic neurotransmission involved in stimulus-reward and relational learning tasks.

D-cycloserine in prelimbic cortex reverses scopolamine-induced deficits in olfactory memory in rats.

Science.gov (United States)

Portero-Tresserra, Marta; Cristóbal-Narváez, Paula; Martí-Nicolovius, Margarita; Guillazo-Blanch, Gemma; Vale-Martínez, Anna

2013-01-01

A significant interaction between N-methyl-D-aspartate (NMDA) and muscarinic receptors has been suggested in the modulation of learning and memory processes. The present study further investigates this issue and explores whether d-cycloserine (DCS), a partial agonist at the glycine binding site of the NMDA receptors that has been regarded as a cognitive enhancer, would reverse scopolamine (SCOP)-induced amnesia in two olfactory learning tasks when administered into the prelimbic cortex (PLC). Thus, in experiment 1, DCS (10 µg/site) was infused prior to acquisition of odor discrimination (ODT) and social transmission of food preference (STFP), which have been previously characterized as paradigms sensitive to PLC muscarinic blockade. Immediately after learning such tasks, SCOP was injected (20 µg/site) and the effects of both drugs (alone and combined) were tested in 24-h retention tests. To assess whether DCS effects may depend on the difficulty of the task, in the STFP the rats expressed their food preference either in a standard two-choice test (experiment 1) or a more challenging three-choice test (experiment 2). The results showed that bilateral intra-PLC infusions of SCOP markedly disrupted the ODT and STFP memory tests. Additionally, infusions of DCS alone into the PLC enhanced ODT but not STFP retention. However, the DCS treatment reversed SCOP-induced memory deficits in both tasks, and this effect seemed more apparent in ODT and 3-choice STFP. Such results support the interaction between the glutamatergic and the cholinergic systems in the PLC in such a way that positive modulation of the NMDA receptor/channel, through activation of the glycine binding site, may compensate dysfunction of muscarinic neurotransmission involved in stimulus-reward and relational learning tasks.

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

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Alberto Pascual-García

2009-03-01

. As a domain set, we have selected a consensus set of 2,890 domains decomposed very similarly in SCOP and CATH. As an alignment algorithm, we used a global version of MAMMOTH developed in our group, which is both rapid and accurate. As a similarity measure, we used the size-normalized contact overlap, and as a clustering algorithm, we used average linkage. The resulting automatic classification at the cross-over point was more consistent than expert ones with respect to the structure similarity measure, with 86% of the clusters corresponding to subsets of either SCOP or CATH superfamilies and fewer than 5% containing domains in distinct folds according to both SCOP and CATH. Almost 15% of SCOP superfamilies and 10% of CATH superfamilies were split, consistent with the notion of fold change in protein evolution. These results were qualitatively robust for all choices that we tested, although we did not try to use alignment algorithms developed by other groups. Folds defined in SCOP and CATH would be completely joined in the regime of large transitivity violations where clustering is more arbitrary. Consistently, the agreement between SCOP and CATH at fold level was lower than their agreement with the automatic classification obtained using as a clustering algorithm, respectively, average linkage (for SCOP or single linkage (for CATH. The networks representing significant evolutionary and structural relationships between clusters beyond the cross-over point may allow us to perform evolutionary, structural, or functional analyses beyond the limits of classification schemes. These networks and the underlying clusters are available at http://ub.cbm.uam.es/research/ProtNet.php.

A scanning electron microscopy study of the invasion of leaflets of a bloat-safe and a bloat-causing legume by rumen microorganisms.

Science.gov (United States)

Fay, J P; Cheng, K J; Hanna, M R; Howarth, R E; Costerton, J W

1981-04-01

A newly developed technique using ruthenium red to detect foci of bacterial digestion in mounts of whole leaflets that had been incubated with rumen bacteria was used to compare the digestion of alfalfa, a bloat-causing legume, and sainfoin, a bloat-safe legume. When whole leaflets were suspended in an artificial rumen medium and inoculated with rumen bacteria, massive bacterial adhesion and proliferation were noted at the stomata of alfalfa leaflets after 6 h of incubation, whereas only a few isolated bacteria adhered near the stomata of sainfoin leaflets After 22 h of incubation, the epidermal layers of alfalfa leaflets had peeled away in many areas, revealing an extensive bacterial invasion of the underlying mesophyll tissue in which large bacterial microcolonies had formed in intercellular spaces, and in intracellular spaces in several areas where plant cell walls had broken down. After 22 h of incubation, the surface of sainfoin leaflets resembled that of alfalfa leaflets at 6 h, with bacterial microcolonies adhering to the area surrounding the stomata, but without sloughing of the epidermis. Uninoculated control leaflets of both species showed no surface alteration but part of their normal bacterial flora had proliferated to form microcolonies on the surface after 22 h incubation. Dry matter loss due to leaching or bacterial digestion when whole leaflets of legumes were suspended in an artificial rumen medium, alone or with rumen bacteria, was significantly higher in the bloat-causing group. Values of leaching and of bacterial digestion were positively correlated. We conclude that reported differences in plant anatomy, and in cell wall chemistry, produce distinct rates or organic nutrient release from legume leaflets, and that these same differences produce an equally distinct susceptibility of leaflets to bacterial invasion, plant cell rupture, and the consequent release of intracellular plant components. The rate of release of organic nutrients from legume

GIS: a comprehensive source for protein structure similarities.

Science.gov (United States)

Guerler, Aysam; Knapp, Ernst-Walter

2010-07-01

A web service for analysis of protein structures that are sequentially or non-sequentially similar was generated. Recently, the non-sequential structure alignment algorithm GANGSTA+ was introduced. GANGSTA+ can detect non-sequential structural analogs for proteins stated to possess novel folds. Since GANGSTA+ ignores the polypeptide chain connectivity of secondary structure elements (i.e. alpha-helices and beta-strands), it is able to detect structural similarities also between proteins whose sequences were reshuffled during evolution. GANGSTA+ was applied in an all-against-all comparison on the ASTRAL40 database (SCOP version 1.75), which consists of >10,000 protein domains yielding about 55 x 10(6) possible protein structure alignments. Here, we provide the resulting protein structure alignments as a public web-based service, named GANGSTA+ Internet Services (GIS). We also allow to browse the ASTRAL40 database of protein structures with GANGSTA+ relative to an externally given protein structure using different constraints to select specific results. GIS allows us to analyze protein structure families according to the SCOP classification scheme. Additionally, users can upload their own protein structures for pairwise protein structure comparison, alignment against all protein structures of the ASTRAL40 database (SCOP version 1.75) or symmetry analysis. GIS is publicly available at http://agknapp.chemie.fu-berlin.de/gplus.

Rumen microbial protein synthesis and nitrogen efficiency as affected by tanniferous and non-tanniferous forage legumes incubated individually or together in Rumen Simulation Technique.

Science.gov (United States)

Grosse Brinkhaus, Anja; Bee, Giuseppe; Schwarm, Angela; Kreuzer, Michael; Dohme-Meier, Frigga; Zeitz, Johanna O

2018-03-01

A limited availability of microbial protein can impair productivity in ruminants. Ruminal nitrogen efficiency might be optimised by combining high-quality forage legumes such as red clover (RC), which has unfavourably high ruminal protein degradability, with tanniferous legumes like sainfoin (SF) and birdsfoot trefoil (BT). Silages from SF and from BT cultivars [Bull (BB) and Polom (BP)] were incubated singly or in combination with RC using the Rumen Simulation Technique (n = 6). The tanniferous legumes, when compared to RC, changed the total short-chain fatty acid profile by increasing propionate proportions at the expense of butyrate. Silage from SF contained the most condensed tannins (CTs) (136 g CT kg -1 dry matter) and clearly differed in various traits from the BT and RC silages. The apparent nutrient degradability (small with SF), microbial protein synthesis, and calculated content of potentially utilisable crude protein (large with SF) indicated that SF had the greatest efficiency in ruminal protein synthesis. The effects of combining SF with RC were mostly linear. The potential of sainfoin to improve protein supply, demonstrated either individually or in combination with a high-performance forage legume, indicates its potential usefulness in complementing protein-deficient ruminant diets and high-quality forages rich in rumen-degradable protein. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

ECONOMIC VALUE OF SOME LEGUMINOUS PLANT SPECIES OF THE COLLECTIONS FROM THE BOTANICAL GARDEN (INSTITUTE OF THE ACADEMY OF SCIENCES OF MOLDOVA

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Alexandru TELEUTA

2016-12-01

Full Text Available The results of the evaluation of the growth and development rates, the seed productivity, the green mass yield, the biochemical composition and the content of amino acids, phosphorous and calcium, the nutritive and energy value of the forage, as well as the biomethane productivity of local ecotypes of the leguminous species maintained in monoculture, in the collection of the Botanical Garden (Institute of the Academy of Sciences of Moldova (BG ASM: Astragalus ponticus, Coronilla varia, Lotus corniculatus, Medicago falcata, Onobrychis arenaria and Trifolium repens are presented in this article. Control variants – the traditional forage crops: Medicago sativa and Onobrychis viciifolia. The local ecotypes of the studied leguminous species were characterized by different growth and development rates. Coronilla varia and Lotus corniculatus, in the 2nd-3rd years, could be harvested, for the first time, 5 days earlier than Medicago sativa, but Medicago falcata and Onobrychis viciifolia – 18 days later. The green mass yield varied from 0.83 kg/m2 to 4.08 kg/m2. The studied ecotypes reached amounts of 0.60-0.89 nutritive units/kg and metabolizable energy 8.05-9.90 MJ/kg of dry matter, the content of digestible protein, of 106.28-225.09 g/nutritive unit, met the zootechnical standards; seed production: 19.12-83.00 g/m2; the biomethane yield ranged from 692 to 3197 m3/ha. Higher yield of natural forage, dry matter and biomethane was produced by Onobrychis arenaria and Coronilla varia.

Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs.

Science.gov (United States)

Regad, Leslie; Martin, Juliette; Camproux, Anne-Claude

2011-06-20

One of the strategies for protein function annotation is to search particular structural motifs that are known to be shared by proteins with a given function. Here, we present a systematic extraction of structural motifs of seven residues from protein loops and we explore their correspondence with functional sites. Our approach is based on the structural alphabet HMM-SA (Hidden Markov Model - Structural Alphabet), which allows simplification of protein structures into uni-dimensional sequences, and advanced pattern statistics adapted to short sequences. Structural motifs of interest are selected by looking for structural motifs significantly over-represented in SCOP superfamilies in protein loops. We discovered two types of structural motifs significantly over-represented in SCOP superfamilies: (i) ubiquitous motifs, shared by several superfamilies and (ii) superfamily-specific motifs, over-represented in few superfamilies. A comparison of ubiquitous words with known small structural motifs shows that they contain well-described motifs as turn, niche or nest motifs. A comparison between superfamily-specific motifs and biological annotations of Swiss-Prot reveals that some of them actually correspond to functional sites involved in the binding sites of small ligands, such as ATP/GTP, NAD(P) and SAH/SAM. Our findings show that statistical over-representation in SCOP superfamilies is linked to functional features. The detection of over-represented motifs within structures simplified by HMM-SA is therefore a promising approach for prediction of functional sites and annotation of uncharacterized proteins.

Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs

Directory of Open Access Journals (Sweden)

Martin Juliette

2011-06-01

Full Text Available Abstract Background One of the strategies for protein function annotation is to search particular structural motifs that are known to be shared by proteins with a given function. Results Here, we present a systematic extraction of structural motifs of seven residues from protein loops and we explore their correspondence with functional sites. Our approach is based on the structural alphabet HMM-SA (Hidden Markov Model - Structural Alphabet, which allows simplification of protein structures into uni-dimensional sequences, and advanced pattern statistics adapted to short sequences. Structural motifs of interest are selected by looking for structural motifs significantly over-represented in SCOP superfamilies in protein loops. We discovered two types of structural motifs significantly over-represented in SCOP superfamilies: (i ubiquitous motifs, shared by several superfamilies and (ii superfamily-specific motifs, over-represented in few superfamilies. A comparison of ubiquitous words with known small structural motifs shows that they contain well-described motifs as turn, niche or nest motifs. A comparison between superfamily-specific motifs and biological annotations of Swiss-Prot reveals that some of them actually correspond to functional sites involved in the binding sites of small ligands, such as ATP/GTP, NAD(P and SAH/SAM. Conclusions Our findings show that statistical over-representation in SCOP superfamilies is linked to functional features. The detection of over-represented motifs within structures simplified by HMM-SA is therefore a promising approach for prediction of functional sites and annotation of uncharacterized proteins.

Rolling schedule approaches for supply chain operations planning

NARCIS (Netherlands)

Spitter, J.M.

2005-01-01

Supply Chain Operations Planning (SCOP) involves the determination of an extensive production plan for a network of manufacturing and distribution entities within and across organizations. The production plan consist of order release decisions that allocate materials and resources in order to

Studies on the weed pathosystems Cirsium arvense - Puccinia punctiformis

NARCIS (Netherlands)

Frantzen, P.A.M.J.

1994-01-01

The biology and epidemiology of the rust fungus Puccinia punctiformis (Str.) Röhl was investigated to evaluate the potential of this rust as a biological agent against the clonal plant species Cirsium arvense (L) Scop., which is considered

De verspreiding van virusziekten van de aardappel (Solanum tuberosum L.) door insekten

NARCIS (Netherlands)

Elze, D.L.

1927-01-01

The object was to study the relation between virus and the transmitting insect, especially the aphids Myzus persicae Sulz., Myzus pseudosolani Theob., Macrosiphum solanifold Ashm., Aphis rhamni Fonsc. and Aphis fabae Scop. The diseases studied were leafroll, common mosaic (virus A), crinckle (virus

Electron and positron interaction with pyrimidine: A theoretical investigation

Science.gov (United States)

Sinha, Nidhi; Antony, Bobby

2018-03-01

Pyrimidine (C4H4N2) is considered as the building block of nucleobases, viz., cytosine, thymine and uracil. They provide a blueprint for probing the scattering of radiation by DNA and RNA bases. In this article, we report the elastic and total scattering cross-sections for electron and positron scattering from the pyrimidine molecule, employing a spherical complex optical potential (SCOP) formalism for an extensive energy range of 10 eV to 5 keV. In the case of positron scattering, the original SCOP formalism is modified to adequately solve the positron-target dynamics. Moreover, a reasonable agreement is observed between the present results and other available datasets, for both electron and positron scattering. The cross-sections for electron and positron impact scattering by pyrimidine are necessary input data for codes that seek to simulate radiation damage, and hence are useful to model biomolecular systems.

Niche convergence suggests functionality of the nocturnal fovea.

Science.gov (United States)

Moritz, Gillian L; Melin, Amanda D; Tuh Yit Yu, Fred; Bernard, Henry; Ong, Perry S; Dominy, Nathaniel J

2014-01-01

The fovea is a declivity of the retinal surface associated with maximum visual acuity. Foveae are widespread across vertebrates, but among mammals they are restricted to haplorhine primates (tarsiers, monkeys, apes, and humans), which are primarily diurnal. Thus primates have long contributed to the view that foveae are functional adaptations to diurnality. The foveae of tarsiers, which are nocturnal, are widely interpreted as vestigial traits and therefore evidence of a diurnal ancestry. This enduring premise is central to adaptive hypotheses on the origins of anthropoid primates; however, the question of whether tarsier foveae are functionless anachronisms or nocturnal adaptations remains open. To explore this question, we compared the diets of tarsiers (Tarsius) and scops owls (Otus), taxa united by numerous anatomical homoplasies, including foveate vision. A functional interpretation of these homoplasies predicts dietary convergence. We tested this prediction by analyzing stable isotope ratios that integrate dietary information. In Borneo and the Philippines, the stable carbon isotope compositions of Tarsius and Otus were indistinguishable, whereas the stable nitrogen isotope composition of Otus was marginally higher than that of Tarsius. Our results indicate that species in both genera consumed mainly ground-dwelling prey. Taken together, our findings support a functional interpretation of the many homoplasies shared by tarsiers and scops owls, including a retinal fovea. We suggest that the fovea might function similarly in tarsiers and scops owls by calibrating the auditory localization pathway. The integration of auditory localization and visual fixation during prey detection and acquisition might be critical at low light levels.

ASH structure alignment package: Sensitivity and selectivity in domain classification

Directory of Open Access Journals (Sweden)

Toh Hiroyuki

2007-04-01

Full Text Available Abstract Background Structure alignment methods offer the possibility of measuring distant evolutionary relationships between proteins that are not visible by sequence-based analysis. However, the question of how structural differences and similarities ought to be quantified in this regard remains open. In this study we construct a training set of sequence-unique CATH and SCOP domains, from which we develop a scoring function that can reliably identify domains with the same CATH topology and SCOP fold classification. The score is implemented in the ASH structure alignment package, for which the source code and a web service are freely available from the PDBj website http://www.pdbj.org/ASH/. Results The new ASH score shows increased selectivity and sensitivity compared with values reported for several popular programs using the same test set of 4,298,905 structure pairs, yielding an area of .96 under the receiver operating characteristic (ROC curve. In addition, weak sequence homologies between similar domains are revealed that could not be detected by BLAST sequence alignment. Also, a subset of domain pairs is identified that exhibit high similarity, even though their CATH and SCOP classification differs. Finally, we show that the ranking of alignment programs based solely on geometric measures depends on the choice of the quality measure. Conclusion ASH shows high selectivity and sensitivity with regard to domain classification, an important step in defining distantly related protein sequence families. Moreover, the CPU cost per alignment is competitive with the fastest programs, making ASH a practical option for large-scale structure classification studies.

Notice of release of Syn1 Tall Fescue

Science.gov (United States)

The Agricultural Research Service, U.S. Department of Agriculture announces the release of Syn1 tall fescue [Festuca arundinacea (syn., Lolium arundinaceum Darbyshire; Schedonorus phoenix (Scop.) Holub)] (PI xxxx, PI xxxx) germplasm developed by Dr. Bryan K. Kindiger at the USDA-ARS Grazinglands Res...

The cultural and ecological impacts of aboriginal tourism: a case study on Taiwan's Tao tribe.

Science.gov (United States)

Liu, Tzu-Ming; Lu, Dau-Jye

2014-01-01

We show that tourism activities severely impact the ecology of Orchid Island, its natural resources, and the culture of the Tao tribe. For example, highway widening, in response to the increased traffic volumes caused by tourism, required many Pandanus trees to be cut and removed, which has placed the coconut crabs in danger of extinction. To promote eco-tourism, observation trips to observe Elegant Scops owls and Birdwing butterflies have taken place, which has affected the breeding of these two protected species. The Elegant Scops owls- and Birdwing butterflies-related tourism activities also break the "evil spirits" taboo of the Tao people and have caused the disappearance of the specifications for using traditional natural resources, causing natural ecosystems to face the threat of excessive use. In addition to promoting and advocating aboriginal tourism of the Tao people on Orchid Island, the Taiwanese government should help the Tao people to develop a management model that combines traditional regulations and tourism activities.

Improvement of the Cubic Spline Function Sets for a Synthesis of the Axial Power Distribution of a Core Protection System

International Nuclear Information System (INIS)

Koo, Bon-Seung; Lee, Chung-Chan; Zee, Sung-Quun

2006-01-01

Online digital core protection system(SCOPS) for a system-integrated modular reactor is being developed as a part of a plant protection system at KAERI. SCOPS calculates the minimum CHFR and maximum LPD based on several online measured system parameters including 3-level ex-core detector signals. In conventional ABB-CE digital power plants, cubic spline synthesis technique has been used in online calculations of the core axial power distributions using ex-core detector signals once every 1 second in CPC. In CPC, pre-determined cubic spline function sets are used depending on the characteristics of the ex-core detector responses. But this method shows an unnegligible power distribution error for the extremely skewed axial shapes by using restrictive function sets. Therefore, this paper describes the cubic spline method for the synthesis of an axial power distribution and it generates several new cubic spline function sets for the application of the core protection system, especially for the severely distorted power shapes needed reactor type

New Records of Raptors in Eastern Kazakhstan

Directory of Open Access Journals (Sweden)

Anna N. Barashkova

2014-11-01

Full Text Available In this article we describe our data on observations of birds of prey in Eastern-Kazakhstan Upland and Northern Balkhash Lake area collected mostly in 2013, May–June and September, and also in 2012, March and May. In total we have recorded 15 species of birds of prey: Steppe Eagle (Aquila nipalensis, Golden Eagle (Aquila chrysaetos, Imperial Eagle (Aquila heliaca, Booted Eagle (Hieraaetus pennatus, Short-Toed Eagle (Circaetus gallicus, Long-Legged Buzzard (Buteo rufinus, Black-Eared Kite (Milvus migrans lineatus, Pallid Harrier (Circus macrourus, Montagu’s Harrier (Circus pygargus, Western Marsh Harrier (Circus aeruginosus, Eurasian Sparrowhawk (Accipiter nisus, Saker Falcon (Falco cherrug, Steppe Merlin (Falco columbarius pallidus, Lesser and Common Kestrels (Falco naumanni, F. tinnunculus, and also 4 owl species: Eurasian Eagle Owl (Bubo bubo, Short-Eared Owl (Asio flammeus, Little Owl (Athene noctua, and Scops Owl (Otus scops. Nesting peculiarities (data on nests' locations and breeding are described for some species.

Increasing weed flora in Danish beet, pea and winter barley fields

DEFF Research Database (Denmark)

Andreasen, Christian; Stryhn, Henrik

2012-01-01

.g. Capsella bursa-pastoris (L.) Medik, Cirsium arvense (L. Scop.), Galium aparine L., Fallopia convolvulus (L.) Á. Löwe, Tripleurospermum inodorum (L.) Sch. Bip.) have been favoured. Some weeds have declined in some crops but increased in other crops (e.g. Chenopodium album L., Geranium pusillum L.), while...

Anticipation of lead time performance in supply chain operations planning

NARCIS (Netherlands)

Jansen, M.M.; Kok, de A.G.; Fransoo, J.C.

2009-01-01

Whilst being predominantly used in practice, linear and mixed integer programming models for Supply Chain Operations Planning (SCOP) are not well suited for modeling the relationship between the release of work to a production unit and its output over time. In this paper we propose an approach where

Seasonal performance evaluation of electric air-to-water heat pump systems

International Nuclear Information System (INIS)

Dongellini, Matteo; Naldi, Claudia; Morini, Gian Luca

2015-01-01

A numerical model for the calculation of the seasonal performance of different kinds of electric air-to-water heat pumps is presented. The model is based on the procedure suggested by the European standard EN 14825 and the Italian standard UNI/TS 11300-4, which specify the guidelines for calculation of the seasonal performance of heat pumps during the heating season (SCOP), the cooling season (SEER) and for the production of domestic hot water. In order to consider the variation of outdoor conditions the developed model employs the bin-method. Different procedures are proposed in the paper for the analysis of the seasonal performance of mono-compressor, multi-compressor and variable speed compressor air-to-water heat pumps. The numerical results show the influence of the effective operating mode of the heat pumps on the SCOP value and put in evidence the impact of the design rules on the seasonal energy consumption of these devices. The study also highlights the importance of the correct sizing of the heat pump in order to obtain high seasonal efficiency and it shows that, for a fixed thermal load, inverter-driven and multi-compressor heat pumps have to be slightly oversized with respect to mono-compressor ones in order to obtain for the same building the highest SCOP values. - Highlights: • A model for the prediction of seasonal performance of HPs has been developed. • The model considers mono-compressor, multi-compressor and inverter-driven HPs. • The procedure takes into account HPs performances at partial load. • Optimization of heat pump sizing depending on its control system.

Niche convergence suggests functionality of the nocturnal fovea

Directory of Open Access Journals (Sweden)

Gillian L. Moritz

2014-07-01

Full Text Available The fovea is a declivity of the retinal surface associated with maximum visual acuity. Foveae are widespread across vertebrates, but among mammals they are restricted to haplorhine primates (tarsiers, monkeys, apes, and humans, which are primarily diurnal. Thus primates have long contributed to the prevailing view that the fovea is a functional adaptation to diurnal color vision. The foveae of nocturnal taxa, such as tarsiers, are widely interpreted as vestigial traits and therefore evidence of a diurnal ancestry. This enduring premise has been central to adaptive hypotheses on the origins of anthropoid primates; however, the question of whether the fovea of tarsiers is a functionless anachronism or a nocturnal adaptation remains open. To address this question, we focused on the diets of tarsiers (Tarsius and scops owls (Otus, two taxa united by numerous anatomical homoplasies, including foveate vision. A functional interpretation of these homoplasies predicts dietary convergence and competition. This prediction can be tested with an analysis of carbon and nitrogen stable isotopes in tissues, which integrate dietary information. As predicted, the isotopic niches of Tarsius and Otus overlapped. In both Borneo and the Philippines, the δ13C values were indistinguishable, whereas the δ15N values of Otus were marginally higher than those of Tarsius. Our results indicate that both diets consisted mainly of ground-dwelling prey and raise the possibility of some resource partitioning. Taken together, our isotopic analysis supports a functional interpretation of the many homoplasies shared by tarsiers and scops owls, including a retinal fovea. We suggest that the fovea might function similarly in tarsiers and scops owls by calibrating the auditory localization pathway. The integration of auditory localization and visual fixation during prey detection and acquisition might be critical at low light levels.

Blockade of muscarinic receptors impairs the retrieval of well-trained memory

Directory of Open Access Journals (Sweden)

Shogo eSoma

2014-04-01

Full Text Available Acetylcholine (ACh is known to play an important role in memory functions, and its deficit has been proposed to cause the cognitive decline associated with advanced age and Alzheimer’s disease (the cholinergic hypothesis. Although many studies have tested the cholinergic hypothesis for recently acquired memory, only a few have investigated the role of ACh in the retrieval process of well-trained cognitive memory, which describes the memory established from repetition and daily routine. To examine this point, we trained rats to perform a two-alternative forced-choice visual detection task. Each trial was started by having the rats pull upward a central-lever, which triggered the presentation of a visual stimulus to the right or left side of the display monitor, and then pulling upward a stimulus-relevant choice-lever located on both sides. Rats learned the task within 10 days, and the task training was continued for a month. Task performance was measured with or without systemic administration of a muscarinic ACh receptor (mAChR antagonist, scopolamine (SCOP, prior to the test. After 30 min of SCOP administration, rats stopped manipulating any lever even though they explored the lever and surrounding environment, suggesting a loss of the task-related associative memory. Three hours later, rats were recovered to complete the trial, but the rats selected the levers irrespective of the visual stimulus, suggesting they remembered a series of lever-manipulations in association with a reward, but not association between the reward and visual stimulation. Furthermore, an m1-AChR, but not nicotinic AChR antagonist caused a similar deficit in the task execution. SCOP neither interfered with locomotor activity nor drinking behavior, while it influenced anxiety. These results suggest that the activation of mAChRs at basal ACh levels is essential for the recall of well-trained cognitive memory.

20(S)-protopanaxadiol (PPD) alleviates scopolamine-induced memory impairment via regulation of cholinergic and antioxidant systems, and expression of Egr-1, c-Fos and c-Jun in mice.

Science.gov (United States)

Lu, Cong; Dong, Liming; Lv, Jingwei; Wang, Yan; Fan, Bei; Wang, Fengzhong; Liu, Xinmin

2018-01-05

20(S)-protopanaxadiol (PPD) possesses various biological properties, including anti-inflammatory, antitumor and anti-fatigue properties. Recent studies found that PPD functioned as a neurotrophic agent to ameliorate the sensory deficit caused by glutamate-induced excitotoxicity through its antioxidant effects and exhibited strong antidepressant-like effects in vivo. The objective of the present study was first to investigate the effect of PPD in scopolamine (SCOP)-induced memory deficit in mice and the potential mechanisms involved. In this study, mice were pretreated with PPD (20 and 40 μmol/kg) and donepezil (1.6 mg/kg) intraperitoneally (i.p) for 14 days. Then, open field test was used to assess the effect of PPD on the locomotor activity and mice were daily injected with SCOP (0.75 mg/kg) to induce cognitive deficits and then subjected to behavioral tests by object location recognition (OLR) experiment and Morris water maze (MWM) task. The cholinergic system function, oxidative stress biomarkers and protein expression of Egr-1, c-Fos, and c-Jun in mouse hippocampus were examined. PPD was found to significantly improve the performance of amnesia mice in OLR and MWM tests. PPD regulated cholinergic function by inhibiting SCOP-induced elevation of acetylcholinesterase (AChE) activity, decline of choline acetyltransferase (ChAT) activity and decrease of acetylcholine (Ach) level. PPD suppressed oxidative stress by increasing activities of antioxidant enzymes such as superoxide dismutase (SOD) and lowering maleic diadehyde (MDA) level. Additionally, PPD significantly elevated the expression of Egr-1, c-Fos, and c-Jun in hippocampus at protein level. Taken together, all these results suggested that 20(S)-protopanaxadiol (PPD) may be a candidate compound for the prevention against memory loss in some neurodegenerative diseases such as Alzheimer's disease (AD). Copyright © 2017. Published by Elsevier B.V.

Application of CHD1 Gene and EE0.6 Sequences to Identify Sexes of Several Protected Bird Species in Taiwan

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E.-C. Lin

2011-06-01

Full Text Available Many bird species, for example: Crested Serpent Eagle (Spilornis cheela hoya, Collared Scops (Owl Otus bakkamoena, Tawny Fish Owl (Ketupa flavipes, Crested Goshawk (Accipiter trivirgatus, and Grass Owl (Tyto longimembris... etc, are monomorphic, which is difficult to identify their sex simply by their outward appearance. Especially for those monomorphic endangered species, finding an effective tool to identify their sex beside outward appearance is needed for further captive breeding programs or other conservation plans. In this study, we collected samples of Black Swan (Cygmus atratus and Nicobar Pigeon (Caloenas nicobarica, two aviaries introduced monomorphic species served as control group, and Crested Serpent Eagle, Collared Scops Owl, Tawny Fish Owl, Crested Goshawk, and Grass Owl, five protected monomorphic species in Taiwan. We used sex-specific primers of avian CHD1 (chromo-helicase-DNA-binding gene and EE0.6 (EcoRI 0.6-kb fragment sequences to identify the sex of these birds. The results showed that CHD1 gene primers could be used to correctly identify the sex of Black Swans, Nicobar Pigeons and Crested Serpent Eagles, but it could not be used to correctly identify sex in Collared Scops Owls, Tawny Fish Owls, and Crested Goshawks. In the sex identification using EE0.6 sequence fragment, A, C, D and E primer sets could be used for sexing Black Swans; A, B, C, and D primer sets could be used for sexing Crested Serpent Eagles; and E primer set could be used for sexing Nicobar Pigeons and the two owl species. Correct determination of sex is the first step if a captive breeding measure is required. We have demonstrated that several of the existing primer sets can be used for sex determination of several captive breeding and indigenous bird species.

Avian mycobacteriosis in free-living raptors in Majorca Island, Spain.

Science.gov (United States)

Millán, Javier; Negre, Nieves; Castellanos, Elena; de Juan, Lucía; Mateos, Ana; Parpal, Lluis; Aranaz, Alicia

2010-02-01

Avian mycobacteriosis is a chronic, infectious disease caused by different species of mycobacteria, usually belonging to the Mycobacterium avium complex. From 2004 to 2007, 589 raptors brought dead or sick to a wildlife rehabilitation centre in Majorca (Balearic Islands, Spain) were necropsied. The birds belonged to 12 different species, chiefly common kestrel (Falco tinnunculus) (n=297), scops owl (Otus scops) (n=109), barn owl (Tyto alba) (n=75), long-eared owl (Asio otus) (n=58), peregrine falcon (Falco peregrinus) (n=27), and booted eagle (Hieraaetus pennatus) (n=13). Gross lesions compatible with mycobacteriosis were observed in 14 birds (2.4%) found in several locations in Majorca. They were 12 kestrels (prevalence in this species, 4.0%), one long-eared owl (1.7%) and one scops owl (0.9%), all the birds presenting white-yellowish nodules from pinpoint size to 1 cm in diameter in diverse organs, mainly in the liver, spleen and intestine. Affected organs were subjected to bacteriology and molecular identification by polymerase chain reaction and, in all cases, infection with M. avium subspecies avium was confirmed. The observed prevalences are similar to those previously observed in Holland, although the actual prevalence detected in this study is likely to be higher than reported because only birds with gross lesions were subjected to culture. Further molecular characterization with a set of six mycobacterial interspersed repetitive unit-variable number tandem repeat loci was used to sub-type the isolates in order to show the existence of possible epidemiological links. Six different genotypes were found, which points to infection from multiple foci. No temporal or geographical aggregation of the cases was observed to be associated with the presence of positive birds or with the different variable number tandem repeat allelic profiles. The most feasible origin might be water or food sources, although the reservoir of mycobacteria remains unknown.

Deleting Both PHLPP1 and CANP1 Rescues Impairments in Long-Term Potentiation and Learning in Both Single Knockout Mice

Science.gov (United States)

Liu, Yan; Sun, Jiandong; Wang, Yubin; Lopez, Dulce; Tran, Jennifer; Bi, Xiaoning; Baudry, Michel

2016-01-01

Calpain-1 (CANP1) has been shown to play a critical role in synaptic plasticity and learning and memory, as its deletion in mice results in impairment in theta-burst stimulation (TBS)-induced LTP and various forms of learning and memory. Likewise, PHLPP1 (aka SCOP) has also been found to participate in learning and memory, as PHLPP1 overexpression…

Condensed tannins act against cattle nematodes

DEFF Research Database (Denmark)

Novobilský, Adam; Mueller-Harvey, Irene; Thamsborg, Stig Milan

2011-01-01

The use of natural plant anthelmintics was suggested as a possible alternative control of gastrointestinal nematodes (GIN) in ruminants. Direct anthelmintic effects of tannin-containing plants have already been shown in sheep and goat GIN. These anthelmintic properties are mainly associated...... with condensed tannins. In the present study, we evaluated possible in vitro effects of three tannin-containing plants against bovine GIN. Effects of Onobrychis viciifolia, Lotus pedunculatus and Lotus corniculatus condensed tannin (CT) extracts on Cooperia oncophora and Ostertagia ostertagi were determined...... (third stage larvae) was also affected by CT extracts from all three plants. In both in vitro assays, extracts with added polyvinylpolypyrrolidone, an inhibitor of tannins, generated almost the same values as the negative control; this confirms the role of CT in the anthelmintic effect of these plant...

Anatomy of Subterranean Organs of Medicinally Used Cardueae and Related Species and its Value for Discrimination

Science.gov (United States)

Fritz, Elisabeth; Saukel, Johannes

2011-01-01

Numerous species of the Asteraceae, the composites, are famous for their use in both traditional and conventional medicine. Reliable anatomical descriptions of these plants and of possible adulterations provide a basis for fast identification and cheap purity controls of respective medicinal drugs by means of light microscopy. Nevertheless, detailed comparative studies on root and rhizome anatomy of valuable as well as related inconsiderable composite plants are largely missing yet. The presented study aims to narrow this gap by performing anatomical analyses of roots and rhizomes of 16 species belonging to the tribe Cardueae, of formerly and currently used drugs as well as their near relatives as potential adulterations (Carlina acaulis L., Carlina vulgaris L., Arctium lappa L., Arctium tomentosum Mill., Carduus defloratus L., Carduus personata (L.) Jacq, Cirsium arvense (L.) Scop., Cirsium vulgare (Savi) Ten., Cirsium erisithales (Jacq.) Scop., Onopordum acanthium L., Silybum marianum (L.) Gaertn., Rhaponticum scariosum Lam., Centaurea jacea L., Centaurea scabiosa L., Centaurea cyanus L., Cnicus benedictus L.). A detailed verbal and graphical survey of the analysed anatomical features is provided. Several characters were finally extracted which allow for discrimination of the examined species and may be effectively used for drug quality controls. PMID:21617780

Efficacy of paracetamol on patent ductus arteriosus closure may be dose dependent: evidence from human and murine studies.

Science.gov (United States)

El-Khuffash, Afif; Jain, Amish; Corcoran, David; Shah, Prakesh S; Hooper, Christopher W; Brown, Naoko; Poole, Stanley D; Shelton, Elaine L; Milne, Ginger L; Reese, Jeff; McNamara, Patrick J

2014-09-01

We evaluated the clinical effectiveness of variable courses of paracetamol on patent ductus arteriosus (PDA) closure and examined its effect on the in vitro term and preterm murine ductus arteriosus (DA). Neonates received one of the following three paracetamol regimens: short course of oral paracetamol (SCOP), long course of oral paracetamol (LCOP), and intravenous paracetamol (IVP) for 2-6 d. Pressure myography was used to examine changes in vasomotor tone of the preterm and term mouse DA in response to paracetamol or indomethacin. Their effect on prostaglandin synthesis by DA explants was measured by mass spectroscopy. Twenty-one preterm infants were included. No changes in PDA hemodynamics were seen in SCOP infants (n = 5). The PDA became less significant and eventually closed in six LCOP infants (n = 7). PDA closure was achieved in eight IVP infants (n = 9). On pressure myograph, paracetamol induced a concentration-dependent constriction of the term mouse DA, up to 30% of baseline (P 1 µmol/l. Indomethacin induced greater DA constriction and suppression of prostaglandin synthesis (P closure may depend on the duration of treatment and the mode of administration. Paracetamol is less potent than indomethacin for constriction of the mouse DA in vitro.

Soil redistribution and nutrient delivery in a Mediterranean rain-fed agro-ecosystem with different crops and management: environmental and economic aspects

Science.gov (United States)

López-Vicente, Manuel; Álvarez, Sara

2017-04-01

Mediterranean agro-ecosystems are characterised by fragmented fields and patched vegetation. This shape governs the spatial patterns of water, soil and nutrient redistribution. Rainfall parameters, human infrastructures, crop management, support practices, and land use changes (set aside crops, land abandonment) control the magnitude of these processes. Under rain-fed water supply conditions, runoff generation and soil water content are two important factors in determining crop yield. Soil erosion and nutrient delivery are two of the factors which limit crop yield and thus, the gross earning of the landowner. In hilly landscapes, farmers usually supply extra soil to fill in the ephemeral gullies, and nutrient replenishment with fertilizers is a common practice. The aim of this study is to evaluate the environmental (runoff yield, soil erosion and nutrient delivery) and economic (replenishment of soil and nutrient losses with new soil and fertilizers) consequences of different conventional and conservative practices (fallow/crop rotation, cover crops, land abandonment, buffer strips) in a Mediterranean rain-fed agro-ecosystem (27 ha) with vineyards, cereal crops, cultivated and abandoned olive orchards, several trails and patches of natural vegetation. The five winter cereal fields (wheat and barley) follow fallow/crop rotation. The four vineyards are devoted to the Garnacha variety: one planted in 2007 with white wine grapes, and three planted in 2008 with red wine grapes. The inter-crop strips are managed with a mixture of plant species as cover crop (CC), including: i) spontaneous vegetation, and ii) plantation of common sainfoin (Onobrychis viciifolia). The maintenance of the CC includes one mowing pass at the end of spring, between May and June. The appearance and development of ephemeral gullies and the deposition of soil at the bottom of the hillslope are two of the main concerns of the landowners. In some places, the accumulation of soil complicates grape

Vitality structure of the populations of some weed species in crop sowings

Directory of Open Access Journals (Sweden)

E. M. Tikhonova

2010-11-01

Full Text Available Features of development of populations of weed species (Cirsium arvense (L. Scop., Sonchus arvensis L., Melandium album (Mill. Garke, Setaria glauca (L. Beauv., Fallopia convolvulus (L. А. Lоve in most typical crops in the forest-steppe zone of the Sumy region. It was studied the crop sowings (winter wheat, rye, barley, buckwheat, pea which was not subjected to the herbicide treatment.

Identification and characterisation of potential biofertilizer bacterial strains

Science.gov (United States)

Karagöz, Kenan; Kotan, Recep; Dadaşoǧlu, Fatih; Dadaşoǧlu, Esin

2016-04-01

In this study we aimed that isolation, identification and characterizations of PGPR strains from rhizosphere of legume plants. 188 bacterial strains isolated from different legume plants like clover, sainfoin and vetch in Erzurum province of Turkey. These three plants are cultivated commonly in the Erzurum province. It was screen that 50 out of 188 strains can fix nitrogen and solubilize phosphate. These strains were identified via MIS (Microbial identification system). According to MIS identification results, 40 out of 50 strains were identified as Bacillus, 5 as Pseudomonas, 3 as Paenibacillus, 1 as Acinetobacter, 1 as Brevibacterium. According to classical test results, while the catalase test result of all isolates are positive, oxidase, KOH and starch hydrolysis rest results are variable.

A calpain-2 selective inhibitor enhances learning & memory by prolonging ERK activation.

Science.gov (United States)

Liu, Yan; Wang, Yubin; Zhu, Guoqi; Sun, Jiandong; Bi, Xiaoning; Baudry, Michel

2016-06-01

While calpain-1 activation is required for LTP induction by theta burst stimulation (TBS), calpain-2 activation limits its magnitude during the consolidation period. A selective calpain-2 inhibitor applied either before or shortly after TBS enhanced the degree of potentiation. In the present study, we tested whether the selective calpain-2 inhibitor, Z-Leu-Abu-CONH-CH2-C6H3 (3, 5-(OMe)2 (C2I), could enhance learning and memory in wild-type (WT) and calpain-1 knock-out (C1KO) mice. We first showed that C2I could reestablish TBS-LTP in hippocampal slices from C1KO mice, and this effect was blocked by PD98059, an inhibitor of ERK. TBS resulted in PTEN degradation in hippocampal slices from both WT and C1KO mice, and C2I treatment blocked this effect in both mouse genotypes. Systemic injection of C2I 30 min before training in the fear-conditioning paradigm resulted in a biphasic dose-response curve, with low doses enhancing and high doses inhibiting freezing behavior. The difference between the doses needed to enhance and inhibit learning matches the difference in concentrations producing inhibition of calpain-2 and calpain-1. A low dose of C2I also restored normal learning in a novel object recognition task in C1KO mice. Levels of SCOP, a ERK phosphatase known to be cleaved by calpain-1, were decreased in dorsal hippocampus early but not late following training in WT mice; C2I treatment did not affect the early decrease in SCOP levels but prevented its recovery at the later time-point and prolonged ERK activation. The results indicate that calpain-2 activation limits the extent of learning, an effect possibly due to temporal limitation of ERK activation, as a result of SCOP synthesis induced by calpain-2-mediated PTEN degradation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Harvest Amounts and Ethnobotanical Uses of the Lime flowers in Turkey

OpenAIRE

TUTTU, Gamze; URSAVAŞ, Serhat; SÖYLER, Recep

2018-01-01

Lime flowers, significantly used in medical and cosmetic industries dueto the active substances they contained. Medically valued ones usually containstannins, mucilage, sugar, fixed oils, gum in flower (Tilia cordata Mill. ve T.platyphyllos Scop.). In addition, ithas essential oils as of 0,5%; in this essential oilcompound, there is present seskiterperik substance called parnesol. Its ash hasvery rich manganese. Its leafs, contains the useful glycosides called Tiliac.The delightful smells of ...

Antibacterial Activity of Pollen Extracts on Pathogenic Microflora from Milk

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Liviu Alexandru Marghitas

2016-11-01

Full Text Available Bee-pollen was used for thousands of years as functional food and medicinal plant product. Various beneficial effects were attributed to it and its consumption was increased over the years. The tests have been made on 16 pollen samples of the following families: Rosaceae, Salicaceae, Fabaceae, Tiliaceae, Asteraceae, Brassicaceae and two polifloral pollen assortment, using difuzimetric method. Among the tested bacteria, the Onobrychis viciifolia pollen has the highest sensitivity 11.86±1.79 mm while the low antibacterial activity was registered for Brassica sp. pollen  8.65±2.65 mm. As the use of antibiotic substances over a long period of time resulted in larger doses of residues in milk and representing a potential biohazard, the use of ethanol extracts from beepollen is a real alternative in the treatment of cows with various diseases.

Gnezdilke Parka Škocjanske jame (Kras, JZ Slovenija/ The breeding birds of Škocjan Caves Park (Kras, SW Slovenia

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Figelj Jernej

2014-12-01

Full Text Available The aim of the study done in 2011 and 2012 was to identify the number of breeding bird species, to provide population estimates as well as to evaluate the conservational importance of Škocjan Caves Park for birds. Common bird species were surveyed using the territory mapping method. Rare species and nocturnally active species were surveyed using species-specific methods: observation, the playback method and the line transect method. 81 species were registered, 49 of which bred within the boundaries of the Park. The most abundant breeding species were Blackcap Sylvia atricapilla (260-320 breeding pairs, Robin Erithacus rubecula (250-310 breeding pairs, Blackbird Turdus merula (230-280 breeding pairs, Chaffinch Fringilla coelebs (230-280 breeding pairs and Marsh Tit Poecile palustris (200-240 breeding pairs. Qualifying species for the Special Protected Area (SPA Kras (SI5000023 also bred within the Park: Peregrine Falcon Falco peregrinus, Nightjar Caprimulgus europaeus, Scops Owl Otus scops and Woodlark Lululla arborea. Eagle Owl Bubo bubo was also registered, but breeding attempts during the study period were unsuccessful due to the negative influence of several factors. One of the largest colonies of Alpine Swifts Apus melba, a rare and localized species in Slovenia, is also of conservation concern.

Measured Performance of a Low Temperature Air Source Heat Pump

Energy Technology Data Exchange (ETDEWEB)

Johnson, R. K. [Johnson Research LLC, Pueblo West, CO (United States)

2013-09-01

A 4-ton Low Temperature Heat Pump (LTHP) manufactured by Hallowell International was installed in a residence near New Haven, Connecticut and monitored over two winters of operation. After attending to some significant service issues, the heat pump operated as designed. This report should be considered a review of the dual compressor 'boosted heat pump' technology. The Low Temperature Heat Pumpsystem operates with four increasing levels of capacity (heat output) as the outdoor temperature drops. The system was shown to select capacity correctly, supplying the appropriate amount of heat to the house across the full range of outdoor temperatures. The system's Coefficient of Performance (Seasonal COP, or SCOP) over two entire winters was calculated, based on measured data, to be 3.29over the first winter and 2.68 over the second winter. A second seasonal efficiency calculation by a different method yielded a SCOP of 2.78 for the first winter and 2.83 for the second winter. This second seasonal efficiency calculation was determined by comparing measured heat pump energy use to the in situ energy use with resistance heat alone. This method is the ratio of the slopes of thedaily energy use load lines.

Predation risk determines breeding territory choice in a Mediterranean cavity-nesting bird community.

Science.gov (United States)

Parejo, Deseada; Avilés, Jesús M

2011-01-01

Non-direct effects of predation can be an important component of the total effect of predation, modulating animal population and community dynamics. The isolated effects of predation risk on the spatial organisation of the breeding bird community, however, remains poorly studied. We investigated whether an experimentally increased predation risk prior to reproduction affected breeding territory selection and subsequent reproductive strategies in three Mediterranean cavity-nesting birds, i.e., the little owl Athene noctua, European roller Coracias garrulus and scops owl Otus scops. We found that territories used the previous year were more likely to be re-occupied when they belonged to the safe treatment rather than to the risky treatment. The first choice of breeders of all three species was for safe territories over risky ones. When all breeding attempts in the season (i.e., final occupation) were considered, breeders also preferred safe to risky sites. In addition, little owls laid larger eggs in risky territories than in safe territories. Our study provides experimental evidence of a rapid preventive response of the three most abundant species in a cavity-nesting bird community to a short-term manipulation of predation risk. This response highlights the key role of the non-direct effects of predation in modulating avian community organisation.

Characterization and cultivation of a wild mushroom species isolated in Brazil
Caracterização e cultivo de uma espécie de cogumelo silvestre isolado no Brasil

OpenAIRE

Luzia Doretto Paccola-Meirelles; Cristina Sayuri Maki

2002-01-01

Wild mushrooms were collected close to cattle manure in pasture areas in Tamarana (Paraná/Brazil), with the objective of finding and domesticating new non-exploited basidiomycetes. An edible basidiomycete of the Agaricales order was classified as belonging to the Macrolepiota bonaerensis species (=Lepiota procera, form bonaerensis (Speg.) Rick or M. procera (Scop.:Fr) Sing.). The mycelia was isolated and characterized for growth rate in different culture media. A vigorous growth was observed ...

Supply chain collaboration and responsiveness : a comparison between Thai automotive and electronics industries

OpenAIRE

Ueki, Yasushi

2013-01-01

This paper examines factors that promote firms to develop supply chain collaborations (SCC) with their partners and relationships between SCC and supply chain operational performances (SCOP), using a questionnaire survey on Thai automotive and electronics industries in 2012. This paper also carries out a comparative study on these questions between the electronics and automotive industries. Two-stage least squares (2SLS) regressions verifY that supplier evaluation and audit is a foundation fo...

Research and development of commercial lidar systems in romania: critical review of the ESYRO lidar systems developed by sc enviroscopy SRL (ESYRO)

Science.gov (United States)

Mihai Cazacu, Marius; Tudose, Ovidiu; Balanici, Dragos; Balin, Ioan

2018-04-01

This paper is shortly presenting the two basic lidar system configurations respectively a micro-lidar and a multi-wavelength lidar systems developed by SC EnviroScopY SRL (ESYRO) from Iasi - Romania in the last decade. Furthermore in addition to the comparative analysis of the two technical configurations the examples of various tests and the capability of the two systems to perform are here presented. Measurements samples of aerosols, clouds, PBL, depolarization and Saharan dust are also illustrated.

Molecular and morphological characterization of Dothiorella species associated with dieback of Ostrya carpinifolia in Slovenia and Italy

Directory of Open Access Journals (Sweden)

Draginja PAVLIC-ZUPANC

2015-09-01

Full Text Available Isolates that resemble Dothiorella (Botryosphaeriaceae, Ascomycota species were isolated from dead twigs, asymptomatic and necrotized bark of European hop hornbeam (Ostrya carpinifolia Scop., Eurasian smoke tree (Cotinus coggygria Scop. and common juniper (Juniperus communis L. growing in western Slovenia and northern Italy. They were identified based on anamorph morphology and phylogenetic analyses of the ITS rDNA and EF-1α sequences, and previously designated as Dothiorella sp. A, B and C. This study has clarified the identity of these species by comparing them with other Dothiorella species known from culture based on gene sequence data, as well as morphological characters of the anamorphs. The phylogenetic results revealed three species, Dothiorella iberica, Dothiorella parva, and a Dothiorella sp. Isolates identified in the phylogenetic analyses as D. parva differed from the original description of this species and are thus described here based on the anamorph morphology. Isolates of D. parva were identified from O. carpinifolia in western Slovenia and northern Italy, and C. coggygria in western Slovenia, and coexist with Dothiorella sp. on O. carpinifolia in northern Italy. Dothiorella iberica was identified on J. communis in western Slovenia, thus expanding the geographic range of this species. This is the first record of D. parva from these hosts and countries. Our results indicate that these Dothiorella species occur widely across the Mediterranean region, and on a variety of hosts.

E-MSD: an integrated data resource for bioinformatics.

Science.gov (United States)

Velankar, S; McNeil, P; Mittard-Runte, V; Suarez, A; Barrell, D; Apweiler, R; Henrick, K

2005-01-01

The Macromolecular Structure Database (MSD) group (http://www.ebi.ac.uk/msd/) continues to enhance the quality and consistency of macromolecular structure data in the worldwide Protein Data Bank (wwPDB) and to work towards the integration of various bioinformatics data resources. One of the major obstacles to the improved integration of structural databases such as MSD and sequence databases like UniProt is the absence of up to date and well-maintained mapping between corresponding entries. We have worked closely with the UniProt group at the EBI to clean up the taxonomy and sequence cross-reference information in the MSD and UniProt databases. This information is vital for the reliable integration of the sequence family databases such as Pfam and Interpro with the structure-oriented databases of SCOP and CATH. This information has been made available to the eFamily group (http://www.efamily.org.uk/) and now forms the basis of the regular interchange of information between the member databases (MSD, UniProt, Pfam, Interpro, SCOP and CATH). This exchange of annotation information has enriched the structural information in the MSD database with annotation from wider sequence-oriented resources. This work was carried out under the 'Structure Integration with Function, Taxonomy and Sequences (SIFTS)' initiative (http://www.ebi.ac.uk/msd-srv/docs/sifts) in the MSD group.

Rehabilitation materials from surface- coal mines in western U.S.A. III. Relations between elements in mine soil and uptake by plants.

Science.gov (United States)

Severson, R.C.; Gough, L.P.

1984-01-01

Plant uptake of Cd, Co, Cu, Fe, Mn, Ni, Pb and Zn from mine soils was assessed using alfalfa Medicago sativa, sainfoin Onobrychis viciaefolia, smooth brome Bromus inermis, crested wheatgrass Agropyron cristatum, slender wheatgrass A. trachycaulum and intermediate wheatgrass A. intermedium; mine soil (cover-soil and spoil material) samples were collected from rehabilitated areas of 11 western US surface-coal mines in North Dakota, Montana, Wyoming and Colorado. Correlations between metals in plants and DTPA-extractable metals from mine soils were generally not statistically significant and showed no consistent patterns for a single metal or for a single plant species. Metal uptake by plants, relative to amounts in DTPA extracts of mine soil, was positively related to mine soil organic matter content or negatively related to mine soil pH. DTPA-extractable metal levels were significantly correlated with mine soil pH and organic-matter content.-from Authors

K-nearest uphill clustering in the protein structure space

KAUST Repository

Cui, Xuefeng

2016-08-26

The protein structure classification problem, which is to assign a protein structure to a cluster of similar proteins, is one of the most fundamental problems in the construction and application of the protein structure space. Early manually curated protein structure classifications (e.g., SCOP and CATH) are very successful, but recently suffer the slow updating problem because of the increased throughput of newly solved protein structures. Thus, fully automatic methods to cluster proteins in the protein structure space have been designed and developed. In this study, we observed that the SCOP superfamilies are highly consistent with clustering trees representing hierarchical clustering procedures, but the tree cutting is very challenging and becomes the bottleneck of clustering accuracy. To overcome this challenge, we proposed a novel density-based K-nearest uphill clustering method that effectively eliminates noisy pairwise protein structure similarities and identifies density peaks as cluster centers. Specifically, the density peaks are identified based on K-nearest uphills (i.e., proteins with higher densities) and K-nearest neighbors. To our knowledge, this is the first attempt to apply and develop density-based clustering methods in the protein structure space. Our results show that our density-based clustering method outperforms the state-of-the-art clustering methods previously applied to the problem. Moreover, we observed that computational methods and human experts could produce highly similar clusters at high precision values, while computational methods also suggest to split some large superfamilies into smaller clusters. © 2016 Elsevier B.V.

О распространении Lobaria scrobiculata (Scop. ) DC. На территории Архангельской области

OpenAIRE

АМОСОВА ИРИНА БОРИСОВНА; СИДОРОВА ОКСАНА ВЛАДИМИРОВНА; ЧУРАКОВА ЕЛЕНА ЮРЬЕВНА; МАМОНТОВ ВИКТОР НИКОЛАЕВИЧ

2015-01-01

В статье приведены сведения о распространении эпифитного лишайника Lobaria scrobiculata (Scop.) DC. на территории Архангельской области. Вид широко распространен на территории Российской Федерации, однако везде встречается редко и локально. На сопредельных с областью территориях данный вид занесен в региональные Красные книги (республики Карелия и Коми, Ненецкий автономный округ). Первые сведения о произрастании вида в Архангельской области приводятся в 2006 году. К настоящему времени авторам...

Electron scattering studies of nitrogen dioxide

Energy Technology Data Exchange (ETDEWEB)

Gupta, Dhanoj; Naghma, Rahla [Department of Applied Physics, Indian School of Mines, Dhanbad 826004, Jharkhand (India); Vinodkumar, Minaxi [V. P. and R. P. T. P. Science College, Vallabh Vidyanagar 388120, Gujarat (India); Antony, Bobby, E-mail: bka.ism@gmail.com [Department of Applied Physics, Indian School of Mines, Dhanbad 826004, Jharkhand (India)

2013-12-15

Highlights: •Two quantum mechanical models used to find TCS for e-NO{sub 2} from 0.5 to 2000 eV. •R-matrix method at low energies (<15 eV) and SCOP at high energies (16 to 2000 eV). •Besides CS, R-matrix method predicts resonances and possibility of DEA formation. •SCOP formalism is used to find total inelastic and elastic CS at high energies. •Resonances detected at 1.33, 3 and 8.41 eV is associated with O{sup −} anion formation by DEA. -- Abstract: Present work reports total cross sections for e-NO{sub 2} scattering over an extensive range of impact energy from 0.5 eV to 2000 eV, through a composite formalism. The ab initio R-matrix method is employed for calculations up to 15 eV while the spherical complex optical potential formalism is used beyond that energy. The electronic excitation cross sections are computed from ground state X{sup 2}A{sub 1} to seven electronically allowed excited states {sup 2}B{sub 1}, {sup 2}B{sub 2}, {sup 2}A{sub 2}, {sup 4}A{sub 2}, {sup 4}B{sub 2}, {sup 4}A{sub 1}, {sup 4}A{sub 1} and {sup 4}B{sub 1}. The eigenphase diagrams presented here reproduces the resonances identified earlier. The structures detected at 1.33, 3 and 8.41 eV can be associated with the observed O{sup −} anion formation through dissociative electron attachment process.

Antimicrobial activity of the essential oil of wild-growing Micromeria thymifolia (Scop. Fritsch

Directory of Open Access Journals (Sweden)

MARIJA A. MARIN

2015-04-01

Full Text Available The genus Micromeria Benth. (Lamiaceae, Nepetoideae includes about 130 species, often aromatc. The essential oil and extracts of some Micromeria species have significant antioxidant, antibacterial and antifungal activities. Micromeria thymifolia is endemic species of the Balkan peninsula. It has been traditionally used in the Mediterranean area as condiment and medicinal plant. The aim of this study was to investigate antimicrobial properties of essential oil of wild Micromeria thymifolia against four Gram negative bacteria (Escherichia coli SY252, Pseudomonas aeruginosa ATCC27853, Salmonella enterica ATCC13076 and human patogen Burkholderia cepacia ATCC25416, four Gram positive bacteria (Enterococcus fecalis ATCC29212, Staphylococcus aureus ATCC25923, Bacillus subtilis ATCC6633, Listeria innocua ATCC33090 and two fungi strains (Candida albicans ATCC10231 and Saccharomyces cerevisiae ATCC9763. The MICs of M. thymifolia essential oil against tested bacteria and fungi was assessed using microtitre plate-based antimicrobial assay. MHB was used as growth media for bacteria, with exception of L. innocua when BHI was used, YPD was used for fungi. The results of our investigation showed that the essential oil of wild-growing M. thymifolia possess significant antimicrobial activity against all tested strains except the P. aeruginosa.

Biblioteca Naţională a României: obiective şi perspective în valorificarea patrimoniului cultural

Directory of Open Access Journals (Sweden)

Elena Tîrziman

2008-01-01

Biblioteca Naţională a României este implicată în proiecte internaţionale care au ca scop crearea de conţinut digital relevant pentru memoria culturală europeană: The European Library – TEL (Biblioteca europeană, Manuscriptorium şi ENRICH – European Networking Resources and Information concerning Cultural Heritage, proiecte coordonate de Biblioteca Naţională a Cehiei. Biblioteca Naţională a României a contribuit la proiectele Manuscriptorium / ENRICH prin carte românească veche din perioada corespunzătoare secolelor XVI-XVII.

THE ROLE OF XYLOPHAGY IN THE REGULATION OF THE NUMBER OF TICKS AND THE POSSIBILITY OF ITS USE IN THE BIOLOGICAL STRUGGLE IN THE CONDITIONS OF THE ABSHERON PENINSULA OF AZERBAIJAN

Directory of Open Access Journals (Sweden)

L. A. Shirinova

2012-01-01

Full Text Available In the forest and fruit conenoses Absheron, identified 37 species xylophagous harmful to forest crops. Of these, 6 species (Lucanus ibericus L., Oructes nasicornis L., Perotis lugubris Sub., Dicerca aenea Sem., Megopis scabricornis Scop., Cerambyx cerdo L. are the most serious pests. Their bioecological particular economic importance and natural enemies has been studied. We have found that 34 entomophagous play a role in regulation of the number xylophagous. Of these, 12 species have economic value, of which 4 types (Xorides irrigator F., Atanycollus initiator Nees, Nidobius umbratus Mots., Tanasimus formicarius L. examined in more detail bioecology, distribution and economic value

Herbage intake regulation and growth of rabbits raised on grasslands: back to basics and looking forward.

Science.gov (United States)

Martin, G; Duprat, A; Goby, J-P; Theau, J-P; Roinsard, A; Descombes, M; Legendre, H; Gidenne, T

2016-10-01

Organic agriculture is developing worldwide, and organic rabbit production has developed within this context. It entails raising rabbits in moving cages or paddocks, which enables them to graze grasslands. As organic farmers currently lack basic technical information, the objective of this article is to characterize herbage intake, feed intake and the growth rate of rabbits raised on grasslands in different environmental and management contexts (weather conditions, grassland type and complete feed supplementation). Three experiments were performed with moving cages at an experimental station. From weaning, rabbits grazed a natural grassland, a tall fescue grassland and a sainfoin grassland in experiments 1, 2 and 3, respectively. Rabbit diets were supplemented with a complete pelleted feed limited to 69 g dry matter (DM)/rabbit per day in experiment 1 and 52 g DM/rabbit per day in experiments 2 and 3. Herbage allowance and fiber, DM and protein contents, as well as rabbit intake and live weight, were measured weekly. Mean herbage DM intake per rabbit per day differed significantly (P<0.001) between experiments. It was highest in experiment 1 (78.5 g DM/day) and was 43.9 and 51.2 g DM/day in experiments 2 and 3, respectively. Herbage allowance was the most significant determinant of herbage DM intake during grazing, followed by rabbit metabolic weight (live weight0.75) and herbage protein and fiber contents. Across experiments, a 10 g DM increase in herbage allowance and a 100 g increase in rabbit metabolic weight corresponded to a mean increase of 6.8 and 9.6 g of herbage DM intake, respectively. When including complete feed, daily mean DM intakes differed significantly among experiments (P<0.001), ranging from 96.1 g DM/rabbit per day in experiment 2 to 163.6 g DM/rabbit per day in experiment 1. Metabolic weight of rabbits raised on grasslands increased linearly over time in all three experiments, yielding daily mean growth rates of 26.2, 19.2 and 28.5 g/day in

Optimal working pairs for solar adsorption cooling applications

International Nuclear Information System (INIS)

Allouhi, A.; Kousksou, T.; Jamil, A.; El Rhafiki, T.; Mourad, Y.; Zeraouli, Y.

2015-01-01

This article suggests a detailed comparison of 7 working pairs intended for use in solar adsorption cooling systems. The performance analysis was based on two indicators: adsorption capacity and solar coefficient of performance. Based on a reformed form of the Dubinin–Astakhov equation, a 3D graph was constructed to show the adsorbate concentration in the appropriate adsorbent as a first step to determine the adsorption capacity. A MATLAB program was developed to solve the system equation to predict the solar coefficient of performance for a typical summer day in a Moroccan city Fez. It was found that maximal adsorption capacity is obtained by activated carbon fibre/methanol (0.3406 kg kg −1 ) followed by activated carbon/methanol (0.2565 kg kg −1 ) and activated carbon/ethanol (0.2008 kg kg −1 ). At a condenser temperature of 25 °C, with an adsorbent mass of 20 kg, and an integrated collector-reactor configuration, the couple silica gel/water for air conditioning purpose can reach an SCOP of 0.3843. Activated carbon fibre/methanol is the following more efficient couple and can be used in the different cooling applications with an SCOP ranging from 0.1726 to 0.3287. Furthermore, adequate indicators are evaluated addressing the economic, environmental and safe aspects associated with each working pair. - Highlights: • 7 working pairs intended for use in solar adsorption cooling systems are compared. • A MATLAB program is used to predict the solar coefficient of performance. • Maximal adsorption capacity is obtained by activated carbon fibre/methanol

Phytochemistry and Biological Properties of Burnet Weed (Sanguisorba spp.: A Review

Directory of Open Access Journals (Sweden)

Anestis KARKANIS

2014-12-01

Full Text Available Great burnet (Sanguisorba officinalis L. and small burnet (Sansguisorba minor Scop. are edible, perennial weeds widely distributed in the world. These are the most widespread Sanguisorba species. The bioactive components of Sanguisorba plants include phenolics (phenolic acids, flavonoids and neolignans and terpenoids. Large potential exists to use burnets as medicinal plants. Sanguisorba species are known to show anticancer properties, antioxidative, antimicrobial and antiviral activities. Also, Sanguisorba extracts show anti-Alzheimer and anti-inflammatory properties. Small burnet extracts could also be a useful alternative to synthetic fungicides for crop production. This review focuses on biological activities of Sanguisorba extracts and emphasizing their potential applications in pharmaceutical areas.

Phytochemistry and Biological Properties of Burnet Weed (Sanguisorba spp.: A Review

Directory of Open Access Journals (Sweden)

Anestis KARKANIS

2014-12-01

Full Text Available Great burnet (Sanguisorba officinalis L. and small burnet (Sansguisorba minor Scop. are edible, perennial weeds widely distributed in the world. These are the most widespread Sanguisorba species. The bioactive components of Sanguisorba plants include phenolics (phenolic acids, flavonoids and neolignans and terpenoids. Large potential exists to use burnets as medicinal plants. Sanguisorba species are known to show anticancer properties, antioxidative, antimicrobial and antiviral activities. Also, Sanguisorba extracts show anti-Alzheimer and anti-inflammatory properties. Small burnet extracts could also be a useful alternative to synthetic fungicides for crop production. This review focuses on biological activities of Sanguisorba extracts and emphasizing their potential applications in pharmaceutical areas.

Electron impact scattering study of hypohalous acids HOX (X = F, Cl, Br, I)

Science.gov (United States)

Yadav, Hitesh; Bhutadia, Harshad; Prajapati, Dinesh; Desai, Hardik; Vinodkumar, Minaxi; Vinodkumar, P. C.

2018-05-01

In this article we aim to report total cross sections (TCS) QT, total elastic cross sections (Qel), total inelastic cross sections (Qinel) i.e. (total ionizations cross sections (Qion)+total electronic excitation cross sections (Qexc)) from threshold of the target to 5000 eV energy range. We have used a well-defined theoretical methodology Spherical Complex Optical Potential (SCOP) to compute QT, Qel and Qinel and Complex Scattering Potential - ionization contribution (CSP - ic) method to report the (Qion). The cross-sectional data reported here for the Hypohalous Acids is for the first time and the present data can become a guideline for the experimentalist to study these targets.

Shape Control of Responsive Building Envelopes

DEFF Research Database (Denmark)

Foged, Isak Worre; Kirkegaard, Poul Henning; Christensen, Jesper Thøger

2010-01-01

The present paper considers shape control of adaptive architectural structures for improvement of structural performance by recognizing changes in their environments and loads, adapting to meet goals, and using past events to improve future performance or maintain serviceability. The general scop...... environmental system to a primary structural system joint into a collective behavioral system equipment with an actuator system is presented....... alternatives. The adaptive structure is a proposal for a responsive building envelope which is an idea of a first level operational framework for present and future investigations towards performance based responsive architectures through a set of responsive typologies. A mock-up concept of a secondary...

E-MSD: the European Bioinformatics Institute Macromolecular Structure Database.

Science.gov (United States)

Boutselakis, H; Dimitropoulos, D; Fillon, J; Golovin, A; Henrick, K; Hussain, A; Ionides, J; John, M; Keller, P A; Krissinel, E; McNeil, P; Naim, A; Newman, R; Oldfield, T; Pineda, J; Rachedi, A; Copeland, J; Sitnov, A; Sobhany, S; Suarez-Uruena, A; Swaminathan, J; Tagari, M; Tate, J; Tromm, S; Velankar, S; Vranken, W

2003-01-01

The E-MSD macromolecular structure relational database (http://www.ebi.ac.uk/msd) is designed to be a single access point for protein and nucleic acid structures and related information. The database is derived from Protein Data Bank (PDB) entries. Relational database technologies are used in a comprehensive cleaning procedure to ensure data uniformity across the whole archive. The search database contains an extensive set of derived properties, goodness-of-fit indicators, and links to other EBI databases including InterPro, GO, and SWISS-PROT, together with links to SCOP, CATH, PFAM and PROSITE. A generic search interface is available, coupled with a fast secondary structure domain search tool.

Protein concentrate production from the biomass contaminated with radionuclides

International Nuclear Information System (INIS)

Nizhko, V.F.; Shinkarenko, M.P.; Polozhaj, V.V.; Krivchik, O.V.

1992-01-01

Coefficients of radionuclides accumulation are determined for traditional and rare forage crops grown on contaminated soils. It is shown that with low concentration of radionuclides in soil minimal level of contamination were found in the biomass of lupine (Lupinus luteus L.) and sainfoin (Onobrychis hybridus L.). Relatively high levels of contamination were found in comfrey (Symphytum asperum Lepech.) and bistort (Polygonum divaricatum L.). Comparatively low accumulation coefficients in case of higher density of soil contamination were observed for white and yellow sweetclovers (Melilotus albus Medik. and M. officinalis (L.) Desr.), while higher values of coefficients were found for bird's-foot trefoil (Lotus corniculatus L.), white clover (Trifolium repens L.) and alsike clover (t. hybridum L.). Biomass of white sweet-clover and alsike clover has been processed to produce leaf protein concentrate. It is shown that with biomass contamination of 1 kBq/kg and above conventional technology based on thermal precipitation of the protein does not provide production of pure product. More purified protein concentrates are obtained after two-stage processing of the biomass

Response of the Digitaria sanguinalis (L.) Scop. to the soil salinity - a greenhouse experiment

Czech Academy of Sciences Publication Activity Database

Šerá, Božena; Hrušková, Iveta; Nováková, Markéta

2011-01-01

Roč. 14, č. 2011 (2011), s. 39-40 ISSN 1644-7298 R&D Projects: GA MŠk OC10032 Institutional research plan: CEZ:AV0Z60870520 Keywords : plant growth * soil contamination * weed Subject RIV: EF - Botanics

Morphological and agronomical characterization and estimates of genetic parameters of sesbania Scop. (Leguminosae accessions

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Veasey E.A.

1999-01-01

Full Text Available Twenty-two accessions of seven Sesbania (Leguminosae species: S. emerus, S. rostrata, S. tetraptera, S. exasperata (annuals, S. grandiflora, S. sesban and S. virgata (perennials, used for ruminant fodder, firewood, wood products, soil improvement, and human food, were investigated, with the aim of characterizing both inter- and intraspecific genetic variability, estimating genetic parameters for the characters evaluated and appraising the forage potential of the accessions. These were planted at the Instituto de Zootecnia, Nova Odessa, SP, Brazil, in a randomized complete block design with 22 treatments and four replications. Seventeen morphological and 17 agronomic characters were evaluated. Genetic parameters coefficient of intraspecific genetic diversity (bi and coefficient of intraspecific genetic variation (CVgi were obtained for the species represented by more than one accession. Highly significant differences were observed among as well as within species for most characters, showing considerable genetic variability. S. exasperata showed intraspecific genetic variability for the largest number of morphological characters. The same was observed for S. sesban for the agronomic characters. Most of the characters gave high bi values, above 0.80, indicating the possibility of selecting superior genotypes. The CVgi values, on the other hand, which indicate the magnitude of the existing genetic variability relative to the character mean, varied according to the species and character evaluated. Differences between annual and perennial species were observed, with higher biomass yields presented by the annuals at the first cut and by the perennials after the second cut, reaching the highest yield at the third cut. The annual species had higher seed production. Accession NO 934 of S. sesban gave the highest biomass yields and regrowth vigor, showing promise as a forage legume plant.

Enige opmerkingen over de aanpassing van de zeeraket (Cakile maritima Scop.) aan het strand

NARCIS (Netherlands)

Veldkamp, J.F.

1971-01-01

It has been assumed that the sea-rockets, Cakile Mill., are adapted to life on the beach. It is here suggested that the habit of the plants, their annual cycle, the structure of the fruit and the consequent distribution by the sea cannot be regarded as typical, special adaptations to the sandy

NEW CYTOKINlNS - META-METHOXYTOPOLlNS IN MICROPROPAGATION OF COTINUS COGGYGRIA SCOP. 'ROYAL PURPLE'

Czech Academy of Sciences Publication Activity Database

Podwyszynska, M.; Wegrzynowicz-Lesiak, E.; Doležal, Karel; Krekule, Jan; Strnad, Miroslav; Saniewski, M.

2012-01-01

Roč. 12, č. 4 (2012), s. 220-228 ISSN 1311-9109 Grant - others:GA MŠk(CZ) ED0007/01/01 Program:ED Institutional research plan: CEZ:AV0Z50380511 Keywords : BA-derivatives * early senescence * in vitro propagation Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 0.492, year: 2012 http://www.journal-pop.org/2012_12_4_220-228.html

Origin and Evolution of Protein Fold Designs Inferred from Phylogenomic Analysis of CATH Domain Structures in Proteomes

Science.gov (United States)

Bukhari, Syed Abbas; Caetano-Anollés, Gustavo

2013-01-01

The spatial arrangements of secondary structures in proteins, irrespective of their connectivity, depict the overall shape and organization of protein domains. These features have been used in the CATH and SCOP classifications to hierarchically partition fold space and define the architectural make up of proteins. Here we use phylogenomic methods and a census of CATH structures in hundreds of genomes to study the origin and diversification of protein architectures (A) and their associated topologies (T) and superfamilies (H). Phylogenies that describe the evolution of domain structures and proteomes were reconstructed from the structural census and used to generate timelines of domain discovery. Phylogenies of CATH domains at T and H levels of structural abstraction and associated chronologies revealed patterns of reductive evolution, the early rise of Archaea, three epochs in the evolution of the protein world, and patterns of structural sharing between superkingdoms. Phylogenies of proteomes confirmed the early appearance of Archaea. While these findings are in agreement with previous phylogenomic studies based on the SCOP classification, phylogenies unveiled sharing patterns between Archaea and Eukarya that are recent and can explain the canonical bacterial rooting typically recovered from sequence analysis. Phylogenies of CATH domains at A level uncovered general patterns of architectural origin and diversification. The tree of A structures showed that ancient structural designs such as the 3-layer (αβα) sandwich (3.40) or the orthogonal bundle (1.10) are comparatively simpler in their makeup and are involved in basic cellular functions. In contrast, modern structural designs such as prisms, propellers, 2-solenoid, super-roll, clam, trefoil and box are not widely distributed and were probably adopted to perform specialized functions. Our timelines therefore uncover a universal tendency towards protein structural complexity that is remarkable. PMID:23555236

Total cross sections for electron scattering with halocarbon molecules

Energy Technology Data Exchange (ETDEWEB)

Naghma, Rahla; Gupta, Dhanoj; Antony, Bobby, E-mail: bka.ism@gmail.com

2014-03-01

Highlights: • A quantum mechanical model to find elastic, inelastic and total CS by e{sup −} impact. • Spherical complex optical potential formalism is used to find total CS. • Result shows consistency and good agreement with previous data wherever available. • Maiden attempt to find CS for CH{sub 2}Br{sub 2}, CHBr{sub 3}, CBr{sub 4} and C{sub n}H{sub 2n+1}Cl (n = 2–4) molecules. • Interesting correlation observed between total CS and polarizability of the molecule. - Abstract: A theoretical study on electron collision with chlorinated methanes: CH{sub 2}Cl{sub 2} and CHCl{sub 3}, brominated methanes: CH{sub 2}Br{sub 2}, CHBr{sub 3} and CBr{sub 4} and some mono chloroalkanes: C{sub n}H{sub 2n+1}Cl (n = 2–4) molecules in gaseous ground state is undertaken to report elastic, inelastic and total cross sections in the 20–5000 eV energy range. The target molecule is represented as a sum of various scattering centres, which are assumed to scatter electrons independently. The spherical complex optical potential (SCOP) is formulated to represent the interaction dynamics between the electron and the constituent scattering centres. Using SCOP, the quantum mechanical scattering problem is solved through partial wave analysis. The results obtained for CH{sub 2}Cl{sub 2} and CHCl{sub 3} are compared with the available experimental and theoretical values. The elastic cross section for CBr{sub 4} shows satisfactory agreement with the previous available data. The cross sections for CH{sub 2}Br{sub 2}, CHBr{sub 3}, and C{sub n}H{sub 2n+1}Cl (n = 2–4) molecules presented in this work are reported for the first time.

OBIECTUL RAPORTULUI JURIDIC DE IPOTECĂ

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Artur TARLAPAN

2015-11-01

Full Text Available Acest articol are drept scop ralierea viziunii tradiţionale asupra obiectului raportului juridic de ipotecă la un concept ştiinţific, bazat pe perceperea naturii sociale a sarcinilor la care este supus dreptul de proprietate în caz de constituire a altor drepturi reale, cum ar fi şi dreptul subiectiv de ipotecă.THE OBJECT OF THE MORTGAGE LEGAL RELATIONThis article aims to rally the traditional view on the object of the mortgage legal relationship to a scientific concept, based on the perception of the social nature of duties to which the property right is subjected, when other real rights, such as the mortgage right, are established.

Formulation of the endophytic fungus Cladosporium oxysporum Berk.

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Bensaci Oussama Ali

2015-01-01

Full Text Available Two formulations containing culture filtrates and conidial suspensions of the endophytic fungus Cladosporium oxysporum Berk. & M.A. Curtis, isolated previously from stems of Euphorbia bupleuroides subsp. luteola (Kralik Maire, were experimentally tested for their aphicid activity against the black bean aphid Aphis fabae Scop. found in Algeria. It was shown that invert emulsions are more effective against aphids, than using aqueous suspensions. This was especially true for formulations containing culture filtrates. The relatively insignificant mortalities obtained by formulations containing conidial suspensions indicated a low infectious potential towards the aphids. The proteolytic activity seemed to be more important than the chitinolytic activity of the fungus against the black bean aphid A. fabae

A structural keystone for drug design

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Rother Kristian

2006-06-01

Full Text Available 3D-structures of proteins and potential ligands are the cornerstones of rational drug design. The first brick to build upon is selecting a protein target and finding out whether biologically active compounds are known. Both tasks require more information than the structures themselves provide. For this purpose we have built a web resource bridging protein and ligand databases. It consists of three parts: i A data warehouse on annotation of protein structures that integrates many well-known databases such as Swiss-Prot, SCOP, ENZYME and others. ii A conformational library of structures of approved drugs. iii A conformational library of ligands from the PDB, linking the realms of proteins and small molecules.

The effects of temperature on the dormancy and germination of Cirsium arvense (L. Scop. seeds

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Anna Bochenek

2011-01-01

Full Text Available The ecophysiological regulation of seed dormancy in perennial species and those with a varied life cycle has not been studied in detail yet. That is why an attempt has been made to determine the Cirsium arvense seed water relations during stratification and afterripening at different temperatures and germination at constant or fluctuating temperatures on the basis of the hydrotime model. The obtained results showed that breaking of the primary dormancy of achenes took place only during the first stratification month at moderate temperatures, mainly due to an increase in the average water-stress tolerance in a seed population. The induction of secondary seed dormancy during after-ripening at all temperatures resulted mostly from a substantial loss of the seeds' ability to tolerate water stress. Fluctuating temperatures affected neither seed germination nor the hydrotime model parameters. The analysis of the variations of hydrotime model parameters allows a better understanding of the physiological basis of seed dormancy relief and induction.

Association of Pinus banksiana Lamb. and Populus tremuloides Michx. seedling fine roots with Sistotrema brinkmannii (Bres.) J. Erikss. (Basidiomycotina).

Science.gov (United States)

Potvin, Lynette R; Richter, Dana L; Jurgensen, Martin F; Dumroese, R Kasten

2012-11-01

Sistotrema brinkmannii (Bres.) J. Erikss. (Basidiomycotina, Hydanaceae), commonly regarded as a wood decay fungus, was consistently isolated from bareroot nursery Pinus banksiana Lamb. seedlings. S. brinkmannii was found in ectomycorrhizae formed by Thelephora terrestris Ehrh., Laccaria laccata (Scop.) Cooke, and Suillus luteus (L.) Roussel. In pure culture combinations with sterile P. banksiana and Populus tremuloides Michx. seedlings, S. brinkmannii colonized root cortical cells while not killing seedlings. Colonization by S. brinkmannii appeared to be intracellular but typical endo- or ectomycorrhizae were not formed. The fungus did not decay roots, although it was shown to produce cellulase in enzyme tests. Results suggest a unique association between S. brinkmannii and seedling roots that is neither mycorrhizal nor detrimental; its exact function remains to be elucidated.

Evaluation of Thermal Margin Analysis Models for SMART

International Nuclear Information System (INIS)

Seo, Kyong Won; Kwon, Hyuk; Hwang, Dae Hyun

2011-01-01

Thermal margin of SMART would be analyzed by three different methods. The first method is subchannel analysis by MATRA-S code and it would be a reference data for the other two methods. The second method is an on-line few channel analysis by FAST code that would be integrated into SCOPS/SCOMS. The last one is a single channel module analysis by safety analysis. Several thermal margin analysis models for SMART reactor core by subchannel analysis were setup and tested. We adopted a strategy of single stage analysis for thermal analysis of SMART reactor core. The model should represent characteristics of the SMART reactor core including hot channel. The model should be simple as possible to be evaluated within reasonable time and cost

Evaluating the efficacy of a structure-derived amino acid substitution matrix in detecting protein homologs by BLAST and PSI-BLAST.

Science.gov (United States)

Goonesekere, Nalin Cw

2009-01-01

The large numbers of protein sequences generated by whole genome sequencing projects require rapid and accurate methods of annotation. The detection of homology through computational sequence analysis is a powerful tool in determining the complex evolutionary and functional relationships that exist between proteins. Homology search algorithms employ amino acid substitution matrices to detect similarity between proteins sequences. The substitution matrices in common use today are constructed using sequences aligned without reference to protein structure. Here we present amino acid substitution matrices constructed from the alignment of a large number of protein domain structures from the structural classification of proteins (SCOP) database. We show that when incorporated into the homology search algorithms BLAST and PSI-blast, the structure-based substitution matrices enhance the efficacy of detecting remote homologs.

Chemical composition, antibacterial and antifungal activity of the essential oils of Cotinus coggygria from Serbia

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MIROSLAV NOVAKOVIC

2007-11-01

Full Text Available Essential oils from leaves with young branches of Cotinus coggygria Scop. from two localities in Serbia (Deliblatska pescara and Zemun, obtained by hydrodistillation, were analysed by GC–MS. Thirty-one component were identified from both oils and among them monoterpenic hydrocarbons were the dominant class (87.4 and 93.1 %. The dominant constituent in both essential oils was limonene (47.0 and 39.2 %. Both oils were also tested for antibacterial and antifungal activities. In comparison to streptomycin, both oils showed slightly higher activity (against most Gram-positive bacteria in the disc diffusion method and slightly lower activity when the microdilution method was employed. They also exhibited antifungal potential higher than that of the commercial fungicide bifonazole.

Characterization and cultivation of a wild mushroom species isolated in Brazil Caracterização e cultivo de uma espécie de cogumelo silvestre isolado no Brasil

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Luzia Doretto Paccola-Meirelles

2002-11-01

Full Text Available Wild mushrooms were collected close to cattle manure in pasture areas in Tamarana (Paraná/Brazil, with the objective of finding and domesticating new non-exploited basidiomycetes. An edible basidiomycete of the Agaricales order was classified as belonging to the Macrolepiota bonaerensis species (=Lepiota procera, form bonaerensis (Speg. Rick or M. procera (Scop.:Fr Sing.. The mycelia was isolated and characterized for growth rate in different culture media. A vigorous growth was observed in PDA Medium (pH 5, ±25°C. The oat culture medium was the most appropriate for cultivation submersed. M. bonaerensis mycelia secretes lipase, cellulase and protease exoenzyme types. Cytological analyses confirmed the bi-nucleated condition of the mycelia, the presence of septa and clamp connections in the hypha. The fructification occurred in the substrate composed of sterilized humus + soil (1:9 plus casing layer with active carbon. Visando a busca e a domesticação de basidiomicetos ainda inexplorados, coletou-se cogumelos silvestres em regiões de pastagens e próximos a esterco de gado no município de Tamarana, PR. Um basidiomiceto comestível da ordem Agaricales foi classificado como pertencente à espécie Macrolepiota bonaerensis (=Lepiota procera, forma bonaerensis (Speg. Rick ou M. procera (Scop.:Fr. Sing.. O micélio foi isolado e caracterizado em relação à taxa de crescimento em diferentes meios de cultura. Observou-se um crescimento vigoroso em meio BDA (pH 5, ±25°C. O meio de aveia foi o mais adequado para cultivo submerso. O micélio de M. bonaerensis secreta enzimas dos tipos lipase, celulase e protease, e as análises citológicas confirmaram a condição binucleada do micélio, a presença de septos e de grampos de conexão nas hifas. A frutificação dos cogumelos ocorreu no substrato constituído de húmus + terra (1:9 esterilizados, acrescido de terra de cobertura e carvão ativado.

Seropositivity and risk factors associated with Toxoplasma gondii infection in wild birds from Spain.

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Oscar Cabezón

Full Text Available Toxoplasma gondii is a zoonotic intracellular protozoan parasite of worldwide distribution that infects many species of warm-blooded animals, including birds. To date, there is scant information about the seropositivity of T. gondii and the risk factors associated with T. gondii infection in wild bird populations. In the present study, T. gondii infection was evaluated on sera obtained from 1079 wild birds belonging to 56 species (including Falconiformes (n=610, Strigiformes (n=260, Ciconiiformes (n=156, Gruiformes (n=21, and other orders (n=32, from different areas of Spain. Antibodies to T. gondii (modified agglutination test, MAT titer ≥1:25 were found in 282 (26.1%, IC(95%:23.5-28.7 of the 1079 birds. This study constitute the first extensive survey in wild birds species in Spain and reports for the first time T. gondii antibodies in the griffon vulture (Gyps fulvus, short-toed snake-eagle (Circaetus gallicus, Bonelli's eagle (Aquila fasciata, golden eagle (Aquila chrysaetos, bearded vulture (Gypaetus barbatus, osprey (Pandion haliaetus, Montagu's harrier (Circus pygargus, Western marsh-harrier (Circus aeruginosus, peregrine falcon (Falco peregrinus, long-eared owl (Asio otus, common scops owl (Otus scops, Eurasian spoonbill (Platalea leucorodia, white stork (Ciconia ciconia, grey heron (Ardea cinerea, common moorhen (Gallinula chloropus; in the International Union for Conservation of Nature (IUCN "vulnerable" Spanish imperial eagle (Aquila adalberti, lesser kestrel (Falco naumanni and great bustard (Otis tarda; and in the IUCN "near threatened" red kite (Milvus milvus. The highest seropositivity by species was observed in the Eurasian eagle owl (Bubo bubo (68.1%, 98 of 144. The main risk factors associated with T. gondii seropositivity in wild birds were age and diet, with the highest exposure in older animals and in carnivorous wild birds. The results showed that T. gondii infection is widespread and can be at a high level in many wild

Myxomycetes de Florianópolis (Santa Catarina - Brasil Myxomycetes of Florianópolis (State of Santa Catarina - Brazil

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Laise de Holanda Cavalcanti

1994-07-01

Full Text Available Considerando a inexistência de registros de ocorrência de Myxomycetes em Florianópolis, realizou- se coletas nas matas da Lagoa do Peri e Lagoa da Conceição, em 1990, assinalando-se as seguintes espécies : Lycogala exiguum Morg. (Enteridiaceae ; Cribraria languescem Rex, C. vulgaris Sclir. (Cribrariaceae ; Arcyria cinerea ( Bull. Pers. , Hemitrichia serpula ( Scop. Rost., H. calyculata ( Speg. Farr e Hemitrichia sp (Trichiaceae ; Stemonitis fusca Roth. e S. smithii Macbr. (Stemonitaceae. Exsicatas encontram-se depositadas no herbário UFP. Lycogala exiguum é assinalada pela primeira vez para Santa Catarina, Cribraria languescens para a região Sul e Cribraria vulgaris para o Brasil. O levantamento eleva para 47 o número de espécies referidas para o Estado de Santa Catarina. Fornece-se um histórico do estudo deste qrupo de organismos em Santa Catarina bem como a área de ocorrência de cada espécie no Estado e nas diferentes regiões do Brasil.A survey on Myxomycetes was made in the woods of Lagoa do Peri and Lagoa da Conceição in 1990, considering the absence of reports of this kind for the city of Florianópolis, when the following species were registered: Lycogala exiguum Morg. (Enteridiaceae; Cribraria languescem Rex, C. vulgaris Schr. (Cribrariaceae; Arcyria cinerea (Bull. Pers. Hemitrichia serpula (Scop. Rost., H. calyculata (Speg. Fair and Hemitrichia sp (Trichiaceae; Stemonitis fusca Roth, and S. smithii Macbr. (Stemonitaceae. Exicates are deposited at the herbarium UFP. Lycogala exiguum is noted for the first time in the state of Santa Catarina, Cribraria languescem in the South and Cribraria vulgaris in Brazil. The survey raises up the number of registers refered to the state of Santa Catarina to 47 species. A review of the studies on this group of organisms in Santa Catarina is given as well as the area where each species occur in this state and in different regions of Brazil.

Protective-decorative revegetation of spoil banks in the Donbass

Energy Technology Data Exchange (ETDEWEB)

Baklanov, V.I.; Podkopaev, A.A.

1985-05-01

Spoil bank reclamation in the Donbass is discussed, where there were 1195 spoil banks from underground coal mines in 1984, 80% of which were conic shaped. The average spoil bank was 60 to 80 m high, base surface was 4.2 ha, volume amounted to 1,144,000 mT. Ninety-five spoil banks were situated in cities or towns and were a source of environmental pollution. Reclamation of a spoil bank in the No 6/14 coal mine in the Makeevugol' association is analyzed. Buildup of the spoil bank started in 1930. The spoil bank was 72 m high, its base was 8.05 ha large, slopes were inclined at 25 to 36 degrees, volume of material amounted to 2.2 million mT. From 1973 to 1978 shape of the spoil bank was changed: its height was reduced to 40 m, slope inclination was reduced to 25 degrees. Spontaneous combustion was controlled by changing spoil bank shape. Slopes were divided into a number of terraces. The spoil bank was covered with a 0.3 m thick soil cover suitable for vegetation. Sainfoin (Onobrychis) was sown on leveled zones of the spoil bank and false acacia (Robinia pseudoacacia) was planted on the terraces. Plant growth in the first and second years was satisfactory.

SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale

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Paccanaro Alberto

2010-03-01

Full Text Available Abstract Background An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed for this task which are "local" in the sense that they assign a protein to a cluster based only on the distances between that protein and the other proteins in the set. It was shown recently that global methods such as spectral clustering have better performance on a wide variety of datasets. However, currently available implementations of spectral clustering methods mostly consist of a few loosely coupled Matlab scripts that assume a fair amount of familiarity with Matlab programming and hence they are inaccessible for large parts of the research community. Results SCPS (Spectral Clustering of Protein Sequences is an efficient and user-friendly implementation of a spectral method for inferring protein families. The method uses only pairwise sequence similarities, and is therefore practical when only sequence information is available. SCPS was tested on difficult sets of proteins whose relationships were extracted from the SCOP database, and its results were extensively compared with those obtained using other popular protein clustering algorithms such as TribeMCL, hierarchical clustering and connected component analysis. We show that SCPS is able to identify many of the family/superfamily relationships correctly and that the quality of the obtained clusters as indicated by their F-scores is consistently better than all the other methods we compared it with. We also demonstrate the scalability of SCPS by clustering the entire SCOP database (14,183 sequences and the complete genome of the yeast Saccharomyces cerevisiae (6,690 sequences. Conclusions Besides the spectral method, SCPS also implements connected component analysis and hierarchical clustering, it integrates TribeMCL, it provides different cluster quality tools, it can extract human-readable protein

SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale.

Science.gov (United States)

Nepusz, Tamás; Sasidharan, Rajkumar; Paccanaro, Alberto

2010-03-09

An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed for this task which are "local" in the sense that they assign a protein to a cluster based only on the distances between that protein and the other proteins in the set. It was shown recently that global methods such as spectral clustering have better performance on a wide variety of datasets. However, currently available implementations of spectral clustering methods mostly consist of a few loosely coupled Matlab scripts that assume a fair amount of familiarity with Matlab programming and hence they are inaccessible for large parts of the research community. SCPS (Spectral Clustering of Protein Sequences) is an efficient and user-friendly implementation of a spectral method for inferring protein families. The method uses only pairwise sequence similarities, and is therefore practical when only sequence information is available. SCPS was tested on difficult sets of proteins whose relationships were extracted from the SCOP database, and its results were extensively compared with those obtained using other popular protein clustering algorithms such as TribeMCL, hierarchical clustering and connected component analysis. We show that SCPS is able to identify many of the family/superfamily relationships correctly and that the quality of the obtained clusters as indicated by their F-scores is consistently better than all the other methods we compared it with. We also demonstrate the scalability of SCPS by clustering the entire SCOP database (14,183 sequences) and the complete genome of the yeast Saccharomyces cerevisiae (6,690 sequences). Besides the spectral method, SCPS also implements connected component analysis and hierarchical clustering, it integrates TribeMCL, it provides different cluster quality tools, it can extract human-readable protein descriptions using GI numbers from NCBI, it interfaces with

Identification of similar regions of protein structures using integrated sequence and structure analysis tools

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Heiland Randy

2006-03-01

Full Text Available Abstract Background Understanding protein function from its structure is a challenging problem. Sequence based approaches for finding homology have broad use for annotation of both structure and function. 3D structural information of protein domains and their interactions provide a complementary view to structure function relationships to sequence information. We have developed a web site http://www.sblest.org/ and an API of web services that enables users to submit protein structures and identify statistically significant neighbors and the underlying structural environments that make that match using a suite of sequence and structure analysis tools. To do this, we have integrated S-BLEST, PSI-BLAST and HMMer based superfamily predictions to give a unique integrated view to prediction of SCOP superfamilies, EC number, and GO term, as well as identification of the protein structural environments that are associated with that prediction. Additionally, we have extended UCSF Chimera and PyMOL to support our web services, so that users can characterize their own proteins of interest. Results Users are able to submit their own queries or use a structure already in the PDB. Currently the databases that a user can query include the popular structural datasets ASTRAL 40 v1.69, ASTRAL 95 v1.69, CLUSTER50, CLUSTER70 and CLUSTER90 and PDBSELECT25. The results can be downloaded directly from the site and include function prediction, analysis of the most conserved environments and automated annotation of query proteins. These results reflect both the hits found with PSI-BLAST, HMMer and with S-BLEST. We have evaluated how well annotation transfer can be performed on SCOP ID's, Gene Ontology (GO ID's and EC Numbers. The method is very efficient and totally automated, generally taking around fifteen minutes for a 400 residue protein. Conclusion With structural genomics initiatives determining structures with little, if any, functional characterization

Controle das plantas daninhas na cultura de alface transplantada com o herbicida oxadiazom Weed control in transplanted lettuce by oxadiazon

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Edison Martins Paulo

1990-01-01

Full Text Available Efetuou-se um experimento com o herbicida oxadiazom, objetivando estudar o efeito do seu uso no controle das plantas daninhas e na, produção da cultura da alface transplantada. Os tratamentos, em número de sete, consistiram em três doses de oxadiazom formulado em grânulos, 1,0,1,5 e 2,0kg/ha, aplicadas após o transplante da alface, dois fratamentos de 1,0kg/ha do herbicida formulado em concentrado emulsionável, um pulverizado antes e, outro, após o transplante, em área total, e duas testemunhas, uma capinada e outra mantida com o mato até a colheita. As principais plantas daninhas que infestaram o experimento foram: beldroega (Portulacca oleracea L., picão-branco (Galinsoga parvifiora Cav., caruru (Amaranthus hibridus L., capim-colchão (Digitaria sanguinalis (L. Scop. e capim-pé-de-galinha (Eleusine indica (L. Gaertn.. Constatou-se o controle dessas espécies pelo oxadiazom, 51 dias após a aplicação, até que se mostrou seletivo à cultura, exceto na sua formulação concentrado emulsionável pulverizada após o transplante, quando reduziu o número e o peso das alfaces colhidas.A trial was carried out in order to study the performance of oxadiazon on yield of transplanted lettuce. The treatments were: oxadiazon granular formulation at rates of 1.0,1.5 and 2.0 kg/ha applied after transplanting and pre emergence of weeds; oxadiazom emulsifiable concentrate at 1.0 kg/ha applied before and after transplanting both as preemergence of weeds. Two controls were used: one without any control of weeds and another free from weeds 33 days after transplanting. Oxadiazon gave good control of Portulacca oleracea L, Galinsoga parviflora Cav., Amaranthus hibridus L, Digitaria sanguinalis (L. Scop, and Eleusine indica (L. Gaertn. up to 51 days after application. Except for oxadiazon emulsifiable formulation, when applied after transplanting, no phototoxicity to lettuce was observed with the herbicide whether applied at preemergence or before

Controle de plantas daninhas na cultura do milho (Zea mays L. por meio de herbicidas Weed control in maize (Zea mays L. with herbicides

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C. A. L. dos Santos

1979-12-01

Full Text Available Com o objetivo de se verificar a ação do butylate, aplicado isoladamente e em mistura com atrazine, no controle de plantas daninhas da cultura do milho, foi instalado um experimento de campo em solo fino areno-argiloso. Foram utilizados os seguintes tratamentos: butylate a 2,80; 3,60 e 4,32 kg/ha (p.p.i.; butylate + atrazine a 3,24 + 0,80; 3,24 + 1,20 e 3,60 + 0,96 kg/ha (p.p.i.; atrazine a 3,00 kg/ha e atrazine + metolachlor a 1,40 + 2,10 kg/ha, ambos aplicados em pré-emergência e empregados como herbicidas padrão para a cultura. As plantas daninhas encontradas foram: tiririca - Cyperus rotundus L., carurú comum - .:maranthus viridis L., capim de colchão - Digitaria sanguinalis (L. Scop. e capim pé-de-galinha Eleusine indica (L. Gaertn. Butylate nas três doses apresentou-se bem contra C. rotundus e E. indica; nas doses de 3,60 e 4,32 kg foram obtidos bons resultados sobre D. sanguinalis. Butylate + atrazine controlou, nas três doses, todas as espécies incidentes, o mesmo ocorrendo com a mistura atrazine + metolachlor. Atrazine foi mais eficiente para A. viridis e E. indica. Nas condições em que foi conduzido o experimento nenhum dos herbicidas foi prejudicial para a cultura.Butylate at 2.80; 3.60 and 4.32 kg/ha and butylate + atrazine at. 3.24 + 0.80; 3.24 + 1.20 and 3.60 + 0.96 kg, were applied in preplant incorporated; atrazine at 3.00 kg and atrazine + metolachlor at 1.40 + 2.10 kg were applied in preemergence on corn. The weeds were represented by Cyperus rotundus L., Amaranthus viridis L., Digitaria sanguinalis (L. Scop. and Eleusine indica (L. Gaertn. Butylate + atrazine, in all rates, atrazine + metolachlor and atrazine gave good control of the weeds in general. Butylate, in the three rates, controlled C. rotundus and E. indica; at 3.60 and 4.32 kg/ha controlled well D. sanguinalis. The herbicides did not cause injuries to the crop.

Population trends of Goričko agricultural landscape birds

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Denac Katarina

2017-12-01

Full Text Available Due to numerous bird surveys in the past 20 years, the avifauna of Goričko is relatively well known. For some species, the very first national ecological researches were conducted in this area. The article summarizes all bird surveys so far. It presents population trends of farmland species which is one of the most threatened bird groups in Europe. Most of the qualifying species of this habitat that are protected within the Natura 2000 network have suffered a decline at Goričko, specifically Quail Coturnix coturnix, Scops Owl Otus scops, Hoopoe Upupa epops, Woodlark Lullula arborea and White Stork Ciconia ciconia. The number of breeding pairs of the latter has not changed, but its fecundity has decreased. Furthermore, populations of other farmland bird species have decreased, for example Skylark Alauda arvensis, Stonechat Saxicola rubicola, Serin Serinus serinus and Common Linnet Linaria cannabina, as well as butterfly populations and tracts of grassland habitat types. National agricultural and nature conservation policies are evidently inefficient in protecting the biodiversity of Goričko. The most probable cause for bird population decline is agricultural intensification, which manifests itself at Goričko as disappearance and intensification of meadows, land consolidation, degradation of traditional orchards and use of pesticides. As a result of land consolidation hedges, uncultivated strips between fields, individual trees and bushes and minority habitat types are disappearing, whereas the surface of arable fields is increasing. Nature conservation measures performed by the Public Institute Goričko Nature Park with the support of DOPPS – BirdLife Slovenia volunteers seem to be efficient, but are spatially and temporally constrained. For this reason, they cannot serve as a substitute for insufficient systemic financing which could be improved by substantive and financial reform of the agri-environmental scheme. Currently, a negligible

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces

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Schroeder Michael

2006-03-01

Full Text Available Abstract Background Currently there is a strong need for methods that help to obtain an accurate description of protein interfaces in order to be able to understand the principles that govern molecular recognition and protein function. Many of the recent efforts to computationally identify and characterize protein networks extract protein interaction information at atomic resolution from the PDB. However, they pay none or little attention to small protein ligands and solvent. They are key components and mediators of protein interactions and fundamental for a complete description of protein interfaces. Interactome profiling requires the development of computational tools to extract and analyze protein-protein, protein-ligand and detailed solvent interaction information from the PDB in an automatic and comparative fashion. Adding this information to the existing one on protein-protein interactions will allow us to better understand protein interaction networks and protein function. Description SCOWLP (Structural Characterization Of Water, Ligands and Proteins is a user-friendly and publicly accessible web-based relational database for detailed characterization and visualization of the PDB protein interfaces. The SCOWLP database includes proteins, peptidic-ligands and interface water molecules as descriptors of protein interfaces. It contains currently 74,907 protein interfaces and 2,093,976 residue-residue interactions formed by 60,664 structural units (protein domains and peptidic-ligands and their interacting solvent. The SCOWLP web-server allows detailed structural analysis and comparisons of protein interfaces at atomic level by text query of PDB codes and/or by navigating a SCOP-based tree. It includes a visualization tool to interactively display the interfaces and label interacting residues and interface solvent by atomic physicochemical properties. SCOWLP is automatically updated with every SCOP release. Conclusion SCOWLP enriches

CONCEPTUL DE PARADIGMĂ ÎN FORMAREA PROFESIONALĂ CONTINUĂ A CADRELOR DIDACTICE

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Vladimir Guțu

2015-12-01

Full Text Available În articol este abordată problema privind formarea continuă a cadrelor didactice din perspectiva paradigmatică: este definită noţiunea „paradigmă”, analizată în plan comparativ paradigma educaţională tradiţională şi modernă, dedus un ansamblu de principii privind formarea continuă a cadrelor didactice. Autorii propun un concept de formare continuă axat pe nevoile individuale şi instituţionale, având ca scop profesionalizarea cadrelor didactice. CONCEPT OF PARADIGM IN TRAINING COURSES FOR TEACHERSThe article gave not address the ongoing training of teachers in terms of paradigmatic: it defines the notion of "paradigm", analyzed comparatively educational paradigm traditional and modern, dedicate a set of principles on training for teachers and propose a concept of continuous training focused on the needs of individual and institutional reforms aimed at professionalizing teachers.

Understanding the issues around quantifying GHG emissions in the financial sector

International Nuclear Information System (INIS)

Jacono, Caline; Poivet, Romain; Havette, Didier; Maille, Catherine; Jaubert, Nathalie; Grandjean, Alain; Cottenceau, Jean-Baptiste; Finidori, Esther; Le Teno, Helene; Cochard, Eric; Sanchez, Thomas; Michaux, Elisabeth; Courcier, Jerome; Marie Lapalle; Guez, Herve; Mia, Ladislas; Agnes Guiral; Martinez, Emmanuel; Rose, Antoine; Breton, Herve; Meyssonier, Guillaume; Arndt, Matthew; Saichs, Nancy; Desfosses, Philippe; Bonnet, Olivier; Rouchon, Jean-Philippe; Smart, Lauren; Lenoel, Benjamin; Dupre, Stanislas; Chenet, Hugues; Lavaud, Patricia; Laviale, Michel; Lucas-Leclin, Valery; Bernasconi, Maxime; Merlin, Alexis; Delettang, Catherine; Gerardi, Anne

2016-01-01

In the face of climate change, the financial sector shows a need to have access to methods and tools for quantifying GHG emissions. This guide proposes to address multiple needs of financial institutions (Investment banks, insurers, retail bank, commercial bank, asset managers...) in terms of financed emissions quantification. It meets two objectives: Make formal methodological recommendations for financial institutions about their operating related emissions, and propose methodological recommendations to quantify financed emissions (Scop3 - Poste 15 'Investments'). The guide is divided in three parts. Volume 1 gives background, identifies sectorial challenges related to climate change and offers an overview of the main existing quantification methods and tools. Volume 2 offers practical and operational guidance for estimating emissions from organisation's back-office functions into the financial sector. Volume 3 (through case studies) offers methodological information to quantify the financed emissions through a 'top-down' approach, with an 'excel' tool to calculate emission factors related to this method

Reakcii rastenij raznyh zhiznennyh form na izmenenija prirodnoj sredy [The response of different plant life forms to natural environment changes

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Schmidt Svetlana

2011-01-01

Full Text Available This paper contains test results revealing norm and stress reactions of various life-form plants: trees — Betula pendula Roth, Tilia platyphyllos Scop., Pinus sylvetris L; water-plant -Galium palustre L.; grass — Solidago Canadensis; cereal — Secale cereal L. Collection and processing of the material was made in the area of Berlin/Brandenburg, Germany. Clark sensor-based method made it possible to determine the amount and rate of the oxygen evolution by plants in the dark and light phase. Under the reaction norm the average amount of the oxygen evolved and the average rate of metabolism processes during dark and light phases are changing simultaneously. Parabolic and periodic dependences of these changes during the vegetation period has been found. Under the stress reaction (drought, illness the rate of metabolism dark reactions is increased by 2—3 times as compared with light reactions. The obtained results may be use for bioindication of the climate change in the Baltic Region.

The response of different plant life forms to natural environment changes

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Schmidt Svetlana

2011-03-01

Full Text Available This paper contains test results revealing norm and stress reactions of various life-form plants: trees — Betula pendula Roth, Tilia platyphyllos Scop., Pinus sylvetris L; water-plant -Galium palustre L.; grass — Solidago Canadensis; cereal — Secale cereal L. Collection and processing of the material was made in the area of Berlin/Brandenburg, Germany. Clark sensor-based method made it possible to determine the amount and rate of the oxygen evolution by plants in the dark and light phase. Under the reaction norm the average amount of the oxygen evolved and the average rate of metabolism processes during dark and light phases are changing simultaneously. Parabolic and periodic dependences of these changes during the vegetation period has been found. Under the stress reaction (drought, illness the rate of metabolism dark reactions is increased by 2—3 times as compared with light reactions. The obtained results may be use for bioindication of the climate change in the Baltic Region.

SIFTS: Structure Integration with Function, Taxonomy and Sequences resource

Science.gov (United States)

Velankar, Sameer; Dana, José M.; Jacobsen, Julius; van Ginkel, Glen; Gane, Paul J.; Luo, Jie; Oldfield, Thomas J.; O’Donovan, Claire; Martin, Maria-Jesus; Kleywegt, Gerard J.

2013-01-01

The Structure Integration with Function, Taxonomy and Sequences resource (SIFTS; http://pdbe.org/sifts) is a close collaboration between the Protein Data Bank in Europe (PDBe) and UniProt. The two teams have developed a semi-automated process for maintaining up-to-date cross-reference information to UniProt entries, for all protein chains in the PDB entries present in the UniProt database. This process is carried out for every weekly PDB release and the information is stored in the SIFTS database. The SIFTS process includes cross-references to other biological resources such as Pfam, SCOP, CATH, GO, InterPro and the NCBI taxonomy database. The information is exported in XML format, one file for each PDB entry, and is made available by FTP. Many bioinformatics resources use SIFTS data to obtain cross-references between the PDB and other biological databases so as to provide their users with up-to-date information. PMID:23203869

Evaluating the efficacy of a structure-derived amino acid substitution matrix in detecting protein homologs by BLAST and PSI-BLAST

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Nalin CW Goonesekere

2009-06-01

Full Text Available Nalin CW GoonesekereDepartment of Chemistry and Biochemistry, University of Northern iowa, Cedar Falls, IA, USAAbstract: The large numbers of protein sequences generated by whole genome sequencing projects require rapid and accurate methods of annotation. The detection of homology through computational sequence analysis is a powerful tool in determining the complex evolutionary and functional relationships that exist between proteins. Homology search algorithms employ amino acid substitution matrices to detect similarity between proteins sequences. The substitution matrices in common use today are constructed using sequences aligned without reference to protein structure. Here we present amino acid substitution matrices constructed from the alignment of a large number of protein domain structures from the structural classification of proteins (SCOP database. We show that when incorporated into the homology search algorithms BLAST and PSI-blaST, the structure-based substitution matrices enhance the efficacy of detecting remote homologs. Keywords: computational biology, protein homology, amino acid substitution matrix, protein structure

THE IMPACT OF PRODUCTION DECISIONS ON THE BALANCE PERFECT MARKET. AN INTERACTIVE STUDY

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Zaharia Marian

2011-12-01

Full Text Available Given that the market equilibrium at a given time t is the result of ratio of product demand, at the same moment of time t, and the supply launched at an earlier time t − Δt , and given that the product remains on the market until the sale was full, rationality of supply decision, by future sizing anticipating of demand, has a fundamental influence on the stability and equilibrium of product market. This paper provides an interactive version for study of sizing impact on offer, based from three dynamic models of perfect markets, derived from Kaldor's cobweb model. Using the same values of marginal demand, marginal supply and incompressible demand and supply are presented interactively the influences of the producer decision on the stability of the product market. IT produs, dezvoltat pentru acest scop poate fi utilizat, de asemenea, în cereri şi cursuri practice în microeconomie, dinamica economică, luarea deciziilor şi altele.

Genus Sisymbrium L. (Rockets In The Flora Of Latvia

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Rūrāne Ieva

2015-04-01

Full Text Available One of the largest genera in the Cruciferae family in Latvia is Sisymbrium L. The genus includes not only native, but also some alien species. The distributions of the Sisymbrium species were reviewed for the first time in the last 50th years in Latvia. The distribution data were compiled from herbarium material, literature and field surveys. An identification key for the Sisymbrium species in Latvia and detailed scientific nomenclature are presented in the current study. In total, seven species of Sisymbrium were found in Latvia — S. supinum L., S. loeselii L., S. polymorphum (Murray Roth, S. volgense M. Bieb. ex E. Fourn., S. altissimum L., S. orientale L. and S. officinale (L. Scop. The mainly were recorded in railway verges, roadsides, waste dumps and wasteland. Five species of the genus are alien to the flora of Latvia — S. loeselii, S. altissimum, S. polymorphum, S. orientale, and S. volgense; two are native — S. supinum and S. officinale.

Lead and cadmium in mushrooms from the vicinity of two large emission sources in Slovenia

International Nuclear Information System (INIS)

Petkovšek, Samar Al Sayegh; Pokorny, Boštjan

2013-01-01

Cd and Pb contents were determined in 699 samples of fruiting bodies of 55 mushrooms species, collected in the period 2000–2007 in the vicinity of the largest Slovenian thermal power plant (the Šalek Valley) and near an abandoned lead smelter (the Upper Meža Valley). The present study is the first regarding lead and cadmium in mushrooms from those exposed areas. Therefore, there was a significant lack of prior data. Among 55 studied mushroom species 36 species are edible and important from an ecotoxicological perspective. However, the remaining non-edible species are important for bioindication and allowed us to compare our results with other studies carried out in other polluted areas in Europe. The highest contents of Cd were found in Agaricus arvensis Schff.: Fr. (117 mg/kg dw) and Agaricus silvicola L.: Fr. (67.9 mg/kg dw), while the highest contents of Pb were found in Macrolepiota procera (Scop.) Singer (53.8 mg/kg dw) and Lycoperdon perlatum Pers. (50 mg/kg dw), respectively. Considering the high contents of both metals in fruiting bodies of edible fungi, together with FAO/WHO directives on tolerable levels of weekly intake of Pb/Cd by humans, it is evident that consumption of some mushroom species originating from both study areas may pose a significant human health risk. A. arvensis Schff.: Fr., A. silvicola L.: Fr. and Cortinarius caperatus (Pers.) Fr. originating from the Šalek Valley, and Armillaria mellea Vahl. P. Kumm., Boletus edulis Bull., L. perlatum Pers., Leccinum versipelle (Fr. and Hök) Snell, and M. procera (Scop.) Singer originating from the Upper Meža Valley should not be consumed at all. Our findings are consistent with some other studies, which emphasized that mushrooms from heavily polluted areas, such as in the vicinity of smelters, accumulate extremely high amounts of metals, and should therefore be omitted from human consumption. - Highlights: ► The Pb contents were higher in saprophytic fungi in comparison with mycorrhizal

Do heterotrophic growth factors determine occurrence and distribution of the creeping thistle (Cirsium arvense (L. Scop. in the landscape?

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Heilmann, Hartmut

2016-02-01

Full Text Available Mixotrophic plants take - aside the sun’s energy - energetic advantage of organic sources which can be described as parasitism, probiosis, symbiosis or saprotrophism. Holoparasites like broomrape (Orobanche minor L. or clover dodder (Cuscuta epithymum ssp. trifolii are limited to their host plants. Orchids live on different probioses and symbioses. Also thistles (Cirsium arvense L occur as mixotroph plants and develop to weeds. Their occurrence shows different nutritional patterns. Aspects of new scientific results are discussed. Hints to regulation of thistles on this basis are given.

Single-tube condensation experiment in Passive Auxiliary Feedwater System of APR1400+

Energy Technology Data Exchange (ETDEWEB)

Shin, Chang Wook; No, Hee Cheon; Yun, Bong Yo; Jeon, Byong Guk [Korea Advanced Institute of Science and Technology, Daejeon (Korea, Republic of)

2012-05-15

Conventional Korean nuclear power plants, Advanced Power Reactors (APR), are characterized by an active cooling system. However, Active cooling system may not prevent significant damage without any AC power source available for its operation as vividly illustrated through the recent Fukushima incident. In the APR1400+ to be designed, an independent passive cooling system was added in order to overcome the aforementioned shortcomings. In the Passive Auxiliary Feedwater System (PAFS), gravity force and density difference between steam and water are used. The system comprises of 240 condensation tubes to efficiently remove decay heat. Before applying the PAFS to APR1400+, the system's safety and heat removal performance must be verified. The present study experimentally evaluates the heat removal performance of a single tube in the PAFS. The objectives of SCOP (Single-tube Condensation experiment facility of PAFS) are the evaluation of the heat removal performance in the tube of the PAFS and database construction under various tube designs and test conditions. Reaching these objectives, we developed advanced measurement techniques for the amount of moisture, heat flux, and water film thickness.

Future prospects for radioactive nuclear beams in North America

International Nuclear Information System (INIS)

Nitschke, J.M.

1993-05-01

In 1989 this author proposed the construction of a dedicated, flexible, radioactive nuclear beams facility that would provide intense beams of nearly all elements for a program of scientific studies in nuclear structure, nuclear reaction dynamics, astrophysics, high-spin physics, nuclei far from stability, material- and surface science, and atomic- and hyperfine-interaction physics. The initial name proposed for the new facility was ''IsoSpin Factory'' to underscore the key feature of this new physics tool; it was later changed to ''IsoSpin Laboratory'' (ISL). The ISL is now supported by a broad base of nuclear scientists and has been identified in the US Long Range Plan on Nuclear Science as one of the new potential construction projects for the second part of this decade. Since 1989 a number of conferences and workshops has been held in which the scientific and technical case for RNB facilities has been made. The purpose of this paper is to focus on the North American plan for the ISL, which was initially summarized in a ''White Paper'' but has since evolved in its scientific and technical scop

Aspecte ale managementului resurselor umane în domeniul public

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Cristina MORA

1999-01-01

Full Text Available După 1989 managementul resurselor umane a început să fie considerat o ştiinţă cheie în succesul şi buna funcţionare a organizaţiilor. Schimbările politice şi legislative au permis o autonomie sporită a administraţilor publice locale. Aceste guvernăminte locale au ca scop administrarea unei unităţi teritoriale şi oferirea de servicii cetăţenilor acesteia. Descentralizarea şi autonomia crescândă a acestora le fac din ce în ce mai importante. Considerându-se că un cadru de funcţionare a fost elaborat, îndeplinirea cu succes a atribuţiilor administrative revine în totalitate organizaţiilor publice, în acest moment fiind necesară o cât mai bună perfecţionare a lor, o creştere a eficacităţii. Este de datoria noastră să demonstrăm că acest lucru se poate face doar cu ajutorul managementului resurselor umane.

Calculations of elastic, ionization and total cross sections for inert gases upon electron impact: threshold to 2 keV

Energy Technology Data Exchange (ETDEWEB)

Vinodkumar, Minaxi [V P and R P T P Science College, Vallabh Vidyanagar 388 120, Gujarat (India); Limbachiya, Chetan [P S Science College, Kadi 382 715, Gujarat (India); Antony, Bobby [Department of Environmental, Earth and Atmospheric Sciences, University of Massachusetts Lowell, 265 Riverside Street, Lowell, MA 01854-5045 (United States); Joshipura, K N [Department of Physics, Sardar Patel University, Vallabh Vidyanagar 388 120, Gujarat (India)

2007-08-28

In this paper we report comprehensive calculations of total elastic (Q{sub el}), total ionization (Q{sub ion}) and total (complete) cross sections (Q{sub T}) for the impact of electrons on inert gases (He, Ne, Ar, Kr and Xe) at energies from about threshold to 2000 eV. We have employed the spherical complex optical potential (SCOP) formalism to evaluate Q{sub el} and Q{sub T} and used the complex spherical potential-ionization contribution (CSP-ic) method to derive Q{sub ion}. The dependence of Q{sub T} on polarizability and incident energy is presented for these targets through an analytical formula. Mutual comparison of various cross sections is provided to show their relative contribution to the total cross sections Q{sub T}. Comparison of Q{sub T} for all these targets is carried out to present a general theoretical picture of collision processes. The present calculations also provide information, hitherto sparse, on the excitation processes of these atomic targets. These results are compared with available experimental and other theoretical data and overall good agreement is observed.

CONTROLE DE PLANTAS DANINHAS E SELETIVIDADE DE HERBICIDAS EM ALHO

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Danton Camacho Garcia

1994-12-01

Full Text Available Foi conduzido um experimento de campo no município de Rio Grande, RS, na safra agrícola 1987/88, com objetivo de avaliar a eficiência de herbicidas no controle de plantas daninhas na cultura do alho, cultivar Quitéria. O delineamento experimental utilizado foi blocos ao acaso, com quatro repetições e os tratamentos constituídos pela aplicação de herbicidas em pré e pós-emergência, das plantas daninhas. Destas, as espécies predominantes na área experimental foram: Digitaria sanguinalis (L. Scop., Eleusine indica (L Gaertne Spergula arvensis L. Os resultados observados indicaram que os tratamentos mais eficientes no controle das plantas daninhas foram: Linuron (PRÉ + Fluazifop-P-butil (PÓS, Linuron (PRÉ + Sethoxydim (PÓS e Oxifluorfen (PRÉ + Alloxydim-sodium (PÓS, que proporcionaram os maiores rendimentos de bulbos curados e toaletados. Houve efeito fitotóxico significativo de Bentazon, aplicado em pós-emergência, reduzindo significativamente o rendimento de bulbos.

Cruciferous weeds in oil seed rape – appearance and control

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Klingenhagen, Günter

2014-02-01

Full Text Available Different cruciferous weeds were drilled in autumn 2011 and 2012 in a field near Münster. Beside common species like hedge mustard (Sisymbrium officinale Scop., shepherd`s purse (Capsella bursa-pastoris, pennycress (Thlaspiarvense, tall hedge mustard (Sisymbrium loeselii and flixweed (Descurainia sophia, we tried to establish weeds that are not common on arable land in Germany until now. These were: Yellow rocket (Barbarea vulgaris, hoary cress (Lepidium draba and Turkish rocket (Bunias orientalis. In autumn 2011 emergence of the sown weeds was poor. In the second year of experiment we got good emergence of the named weeds excluding hoary cress (Lepidium draba. In autumn 2011 and 2012 different herbicidecombinations were applied across the stripes. The best results were achieved with Colzor Trio (clomazone + dimethachlor + napropamid which was applied in pre-emergence state, a spray sequence Butisan Gold (metazachlor + quinmerac + dimethenamid-P applied in pre-emergence followed by Salsa (ethametsulfuronmethyl + Trend (adjuvant in post-emergence and Clearfield-Vantiga (metazachlor + quinmerac + imazamox + Dash (adjuvant, also applied in post-emergence state of the weeds.

SA-Mot: a web server for the identification of motifs of interest extracted from protein loops.

Science.gov (United States)

Regad, Leslie; Saladin, Adrien; Maupetit, Julien; Geneix, Colette; Camproux, Anne-Claude

2011-07-01

The detection of functional motifs is an important step for the determination of protein functions. We present here a new web server SA-Mot (Structural Alphabet Motif) for the extraction and location of structural motifs of interest from protein loops. Contrary to other methods, SA-Mot does not focus only on functional motifs, but it extracts recurrent and conserved structural motifs involved in structural redundancy of loops. SA-Mot uses the structural word notion to extract all structural motifs from uni-dimensional sequences corresponding to loop structures. Then, SA-Mot provides a description of these structural motifs using statistics computed in the loop data set and in SCOP superfamily, sequence and structural parameters. SA-Mot results correspond to an interactive table listing all structural motifs extracted from a target structure and their associated descriptors. Using this information, the users can easily locate loop regions that are important for the protein folding and function. The SA-Mot web server is available at http://sa-mot.mti.univ-paris-diderot.fr.

D-Ribulose 5-Phosphate 3-Epimerase: Functional and Structural Relationships to Members of the Ribulose-Phosphate Binding (beta/alpha)8-Barrel Superfamily

International Nuclear Information System (INIS)

Akana, J.; Federov, A.; Federov, E.; Novak, W.; Babbitt, P.; Almo, S.; Gerlt, J.

2006-01-01

The 'ribulose phosphate binding' superfamily defined by the Structural Classification of Proteins (SCOP) database is considered the result of divergent evolution from a common (β/α) 8 -barrel ancestor. The superfamily includes D-ribulose 5-phosphate 3-epimerase (RPE), orotidine 5'-monophosphate decarboxylase (OMPDC), and 3-keto-L-gulonate 6-phosphate decarboxylase (KGPDC), members of the OMPDC suprafamily, as well as enzymes involved in histidine and tryptophan biosynthesis that utilize phosphorylated metabolites as substrates. We now report studies of the functional and structural relationships of RPE to the members of the superfamily. As suggested by the results of crystallographic studies of the RPEs from rice and Plasmodium falciparum, the RPE from Streptococcus pyogenes is activated by Zn 2+ which binds with a stoichiometry of one ion per polypeptide. Although wild type RPE has a high affinity for Zn 2+ and inactive apoenzyme cannot be prepared, the affinity for Zn 2+ is decreased by alanine substitutions for the two histidine residues that coordinate the Zn 2+ ion (H34A and H67A); these mutant proteins can be prepared in an inactive, metal-free form and activated by exogenous Zn 2+ . The crystal structure of the RPE was solved at 1.8 Angstroms resolution in the presence of D-xylitol 5-phosphate, an inert analogue of the D-xylulose 5-phosphate substrate. This structure suggests that the 2,3-enediolate intermediate in the 1,1-proton transfer reaction is stabilized by bidentate coordination to the Zn 2+ that also is liganded to His 34, Asp 36, His 67, and Asp 176; the carboxylate groups of the Asp residues are positioned also to function as the acid/base catalysts. Although the conformation of the bound analogue resembles those of ligands bound in the active sites of OMPDC and KGPDC, the identities of the active site residues that coordinate the essential Zn 2+ and participate as acid/base catalysts are not conserved. We conclude that only the phosphate

D-Ribulose 5-Phosphate 3-Epimerase: Functional and Structural Relationships to Members of the Ribulose-Phosphate Binding (beta/alpha)8-Barrel Superfamily

Energy Technology Data Exchange (ETDEWEB)

Akana,J.; Federov, A.; Federov, E.; Novak, W.; Babbitt, P.; Almo, S.; Gerlt, J.

2006-01-01

The 'ribulose phosphate binding' superfamily defined by the Structural Classification of Proteins (SCOP) database is considered the result of divergent evolution from a common ({beta}/{alpha}){sub 8}-barrel ancestor. The superfamily includes D-ribulose 5-phosphate 3-epimerase (RPE), orotidine 5'-monophosphate decarboxylase (OMPDC), and 3-keto-L-gulonate 6-phosphate decarboxylase (KGPDC), members of the OMPDC suprafamily, as well as enzymes involved in histidine and tryptophan biosynthesis that utilize phosphorylated metabolites as substrates. We now report studies of the functional and structural relationships of RPE to the members of the superfamily. As suggested by the results of crystallographic studies of the RPEs from rice and Plasmodium falciparum, the RPE from Streptococcus pyogenes is activated by Zn{sup 2+} which binds with a stoichiometry of one ion per polypeptide. Although wild type RPE has a high affinity for Zn{sup 2+} and inactive apoenzyme cannot be prepared, the affinity for Zn{sup 2+} is decreased by alanine substitutions for the two histidine residues that coordinate the Zn{sup 2+} ion (H34A and H67A); these mutant proteins can be prepared in an inactive, metal-free form and activated by exogenous Zn{sup 2+}. The crystal structure of the RPE was solved at 1.8 Angstroms resolution in the presence of D-xylitol 5-phosphate, an inert analogue of the D-xylulose 5-phosphate substrate. This structure suggests that the 2,3-enediolate intermediate in the 1,1-proton transfer reaction is stabilized by bidentate coordination to the Zn{sup 2+} that also is liganded to His 34, Asp 36, His 67, and Asp 176; the carboxylate groups of the Asp residues are positioned also to function as the acid/base catalysts. Although the conformation of the bound analogue resembles those of ligands bound in the active sites of OMPDC and KGPDC, the identities of the active site residues that coordinate the essential Zn{sup 2+} and participate as acid/base catalysts

Controle de plantas daninhas com herbicidas na cultura do feijão (Phaseolus vulgaris L. Weed control in beans (Phaseolus vulgaris L. with herbicides

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L.S.P. Cruz

1981-12-01

Full Text Available Foi realizada uma pesquisa em 1970, para se conhecer os efeitos de três herbicidas aplicados em pré-plantio incorporado (EPTC a 3,60 kg/ha, nitralin e trifluralin a 0,76 kg/ha e de um em pré-emergência (fluorodifen a 3,00 kg/ha na cultura de feijão comparados com uma testemunha sem herbicida. As duas gramíneas presentes no ensaio, Eleusine indica (L. Gaertn. e Digitaria sanguinalis (L. Scop. foram eficientemente controladas por todos os herbicidas, com indices de controle superiores a 87,00%, em contagem de plantas daninhas realizada 29 dias após a aplicação dos herbicidas. Dentre as dicotiledóneas presentes, Amaranthus viridis L. também foi eficientemente controlado por todos os herbicidas, com indices de controle superiores a 92,00%. Ageratum conyzoides L. foi eficientemente controlado por fluorodifen (91,60% e regularmente por EPTC (78,99% e por nitralin (79,83%. Trifluralin não foi eficiente contra A. conyzoides L. Nenhum dos herbicidas testados controlou Ipomoea sp e Chenopodium ambrosioides L., também presentes no experimento. EPTC e nitralin apresentaram as menores porcentagens de infestação geral de plantas daninhas, tendo, aos 51 dias da aplicação dos produtos, quando suas parcelas foram capinadas mecanicamente, 8,00 e 17,00% de infestação, respectivamente. Trifluralin e fluorodifen precisaram de limpeza aos 42 dias da aplicação, e a testemunha já aos 29 dias, pois apresentavam parcelas com 25,00%, ou mais, de infestação, naquelas épocas. Os herbicidas experimentados não foram prejudiciais à germinação e ao desenvolvimento vegetativo dos feijoeiros, assim como à sua produção de grãos.The weed control with herbicides in beans crop was studied during 1970 year, in Campinas-SP, on a sandy-loam soil. The treatments employed were EPTC at 3.60 kg/ha, nitralin and trifluralin at 0.76 kg/ha, all applied in preplant i •porated; fluorodifen in preemergence at 3.00 kg/ha and a hoed check. Among the weeds

SCOWLP classification: Structural comparison and analysis of protein binding regions

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Anders Gerd

2008-01-01

. The hierarchical classification of PBRs is implemented into the SCOWLP database and extends the SCOP classification with three additional family sub-levels: Binding Region, Interface and Contacting Domains. SCOWLP contains 9,334 binding regions distributed within 2,561 families. In 65% of the cases we observe families containing more than one binding region. Besides, 22% of the regions are forming complex with more than one different protein family. Conclusion The current SCOWLP classification and its web application represent a framework for the study of protein interfaces and comparative analysis of protein family binding regions. This comparison can be performed at atomic level and allows the user to study interactome conservation and variability. The new SCOWLP classification may be of great utility for reconstruction of protein complexes, understanding protein networks and ligand design. SCOWLP will be updated with every SCOP release. The web application is available at http://www.scowlp.org.

Alien plant species (ephemerophytes in Romensko-Poltavsky Geobotanical District, Ukraine

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Dvirna Tetyana S.

2017-09-01

Full Text Available This paper presents the results of research on ephemerophytes of the alien portion of the flora of the Romensko-Poltavsky Geobotanical District (north-eastern Ukraine. It is a detailed study of this group of plants, conducted for the first time in the Ukraine. The checklist of alien vascular plants contains 345 species, of which 27 species are ephemerophytes (or 8%: Adonis aestivalis, A. annua, Papaver albiflorum, Urtica cannabina, Gypsophila perfoliata, Atriplex micrantha, Chenopodium × preissmannii, Ch. × thellungii, Rumex longifolius, Sisymbrium polymorphum, Euphorbia humifusa, Malus sylvestris, Onobrychis viciifolia, Astrodaucus orientalis, Datura tatula, Solanum schultesii, Lindernia procumbens, Melampyrum cristatum, Helianthus annuus, Petasites spurius, Xanthium ripicola × Xanthium albinum, Echinochloa tzvelevii, Panicum capillare, Panicum capillare L. subsp. barvipulvinatum, Phalaris canariensis, Setaria ×ambigua, Sorghum halepense. The basis of this work is original data of the author obtained during field studies, and a critical study of the literature, archival, cartographic materials and herbarium collections, and the use of classical methods of botanical classification. Complex research of this group of plants was conducted and as a result of these investigations the following characteristics were established: a predominance of kenophytes of Mediterranean origin in this group, species of arid areas, cosmopolitan species with a diffuse type of space structure, therophytes, herbaceous monocarpic plants, mesotrophes, heliophytes and xeromesophytes, with an insignificant degree of impact on native plant communities and with a limited distribution within the study region. The combination of these results indicates that ephemerophytes comprise a temporary, unstable component of the flora of this region of the Ukraine. The paper provides maps of the distribution of these 27 species.

Utilización de Onobrychis viciifolia para modular el metabolismo ruminal y la biohidrogenación de ácidos grasos de la dieta

OpenAIRE

Missaoui, Hajer

2015-01-01

Tesis de máster del Instituto de Ganadería de Montaña (IGM-CSIC-ULE). Departamento de Nutrición y Producción de Herbívoros; Cnetro Internacional de Altos Estudios Agronómicos Mediterráneos (CIHEAM); Instituto Agronómico Mediterráneo de Zaragoza (IAMZ).--Octubre 2015.

Aspectos químicos y bioactivos de tres matrices naturales: Calendula officinalis L., Mentha cervina L. y Macrolepiota procera (Scop.) Singer

OpenAIRE

Gordo, María Miguel

2015-01-01

Mestrado em cooperação com a Universidade de Salamanca Desde la antigüedad se han utilizado las plantas y las setas como fuentes de nutrientes y por sus propiedades medicinales. En la actualidad, continua el interés, en la búsqueda de productos naturales que den lugar a nuevos fármacos, complementos dietéticos o nutracéuticos en alimentos funcionales, de ahí la importancia de su estudio químico y bioactivo. Con el fin ampliar el conocimiento de estas fuentes naturales y por tanto de sus...

Cadmium accumulation and its effect on the in vitro growth of woody fleabane and mycorrhized white birch

Energy Technology Data Exchange (ETDEWEB)

Fernandez, R.; Bertrand, A.; Casares, A. [Departamento de Biologia de Organismos y Sistemas, Oviedo University, Catedratico Rodrigo Uria s/n, 33071 Oviedo (Spain); Garcia, R. [Departamento de Quimica Fisica y Analitica, Oviedo University, Julian Claveria s/n, 33071 Oviedo (Spain); Gonzalez, A. [Departamento de Biologia de Organismos y Sistemas, Oviedo University, Catedratico Rodrigo Uria s/n, 33071 Oviedo (Spain)], E-mail: aidag@uniovi.es; Tames, R.S. [Departamento de Biologia de Organismos y Sistemas, Oviedo University, Catedratico Rodrigo Uria s/n, 33071 Oviedo (Spain)

2008-04-15

The effect of Cd on woody fleabane (Dittrichia viscosa (L.) Greuter) and white birch (Betula celtiberica Rothm. and Vasc.) was examined. Woody fleabane and white birch were grown in vitro in Murashige, T., Skoog, F., [1962. A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15, 473-479] (MS) plus Cd (10 mg Cd kg{sup -1}) and except for root length in white birch, plant development was inhibited when Cd was added. Cd accumulation in above-ground tissues showed differences among clones, reaching 1300 and 463 mg Cd kg{sup -1} dry wt. in selected clones of woody fleabane and white birch, respectively. Tolerance of Paxillus filamentosus (Scop) Fr. to Cd was also examined before mycorrhization. Plants of mycorrhized white birch grown in the presence of Cd had a better development and accumulated more Cd in their shoots than the non-mycorrhized ones. The use of selected clones of woody fleabane and the mycorrhization of white birch enhance extraction efficiency from contaminated soils in phytoremediation programs. - The high accumulation of Cd observed in selected clones of Dittrichia viscosa and mycorrhized Betula celtiberica grown in vitro implies a potential application for phytoextraction.

Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples

Energy Technology Data Exchange (ETDEWEB)

Gopinath, T. [University of Minnesota, Department of Biochemistry, Molecular Biology, and Biophysics (United States); Mote, Kaustubh R. [University of Minnesota, Department of Chemistry (United States); Veglia, Gianluigi, E-mail: vegli001@umn.edu [University of Minnesota, Department of Biochemistry, Molecular Biology, and Biophysics (United States)

2015-05-15

We present a new method called DAISY (Dual Acquisition orIented ssNMR spectroScopY) for the simultaneous acquisition of 2D and 3D oriented solid-state NMR experiments for membrane proteins reconstituted in mechanically or magnetically aligned lipid bilayers. DAISY utilizes dual acquisition of sine and cosine dipolar or chemical shift coherences and long living {sup 15}N longitudinal polarization to obtain two multi-dimensional spectra, simultaneously. In these new experiments, the first acquisition gives the polarization inversion spin exchange at the magic angle (PISEMA) or heteronuclear correlation (HETCOR) spectra, the second acquisition gives PISEMA-mixing or HETCOR-mixing spectra, where the mixing element enables inter-residue correlations through {sup 15}N–{sup 15}N homonuclear polarization transfer. The analysis of the two 2D spectra (first and second acquisitions) enables one to distinguish {sup 15}N–{sup 15}N inter-residue correlations for sequential assignment of membrane proteins. DAISY can be implemented in 3D experiments that include the polarization inversion spin exchange at magic angle via I spin coherence (PISEMAI) sequence, as we show for the simultaneous acquisition of 3D PISEMAI–HETCOR and 3D PISEMAI–HETCOR-mixing experiments.

Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples.

Science.gov (United States)

Gopinath, T; Mote, Kaustubh R; Veglia, Gianluigi

2015-05-01

We present a new method called DAISY (Dual Acquisition orIented ssNMR spectroScopY) for the simultaneous acquisition of 2D and 3D oriented solid-state NMR experiments for membrane proteins reconstituted in mechanically or magnetically aligned lipid bilayers. DAISY utilizes dual acquisition of sine and cosine dipolar or chemical shift coherences and long living (15)N longitudinal polarization to obtain two multi-dimensional spectra, simultaneously. In these new experiments, the first acquisition gives the polarization inversion spin exchange at the magic angle (PISEMA) or heteronuclear correlation (HETCOR) spectra, the second acquisition gives PISEMA-mixing or HETCOR-mixing spectra, where the mixing element enables inter-residue correlations through (15)N-(15)N homonuclear polarization transfer. The analysis of the two 2D spectra (first and second acquisitions) enables one to distinguish (15)N-(15)N inter-residue correlations for sequential assignment of membrane proteins. DAISY can be implemented in 3D experiments that include the polarization inversion spin exchange at magic angle via I spin coherence (PISEMAI) sequence, as we show for the simultaneous acquisition of 3D PISEMAI-HETCOR and 3D PISEMAI-HETCOR-mixing experiments.

PANDORA: keyword-based analysis of protein sets by integration of annotation sources.

Science.gov (United States)

Kaplan, Noam; Vaaknin, Avishay; Linial, Michal

2003-10-01

Recent advances in high-throughput methods and the application of computational tools for automatic classification of proteins have made it possible to carry out large-scale proteomic analyses. Biological analysis and interpretation of sets of proteins is a time-consuming undertaking carried out manually by experts. We have developed PANDORA (Protein ANnotation Diagram ORiented Analysis), a web-based tool that provides an automatic representation of the biological knowledge associated with any set of proteins. PANDORA uses a unique approach of keyword-based graphical analysis that focuses on detecting subsets of proteins that share unique biological properties and the intersections of such sets. PANDORA currently supports SwissProt keywords, NCBI Taxonomy, InterPro entries and the hierarchical classification terms from ENZYME, SCOP and GO databases. The integrated study of several annotation sources simultaneously allows a representation of biological relations of structure, function, cellular location, taxonomy, domains and motifs. PANDORA is also integrated into the ProtoNet system, thus allowing testing thousands of automatically generated clusters. We illustrate how PANDORA enhances the biological understanding of large, non-uniform sets of proteins originating from experimental and computational sources, without the need for prior biological knowledge on individual proteins.

Conversion trials in mixed coppices of Gargano (Puglia, Italy: first results

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2009-03-01

Full Text Available Six plots have been drawn in an mixed aged coppice stand, 40 years after last coppicing; they represent a typical expression of Doronico-Carpinetum phytosociological association and they are characteristic of many woods of Gargano’s territory, composed by Quercus cerris L. (turkey oak, Quercus pubescens Willd. (downy oak, Acer opalus Mill. (italian maple, Carpinus betulus L. (european hornbeam, Ostrya carpinifolia Scop. (hop hornbeam. Compared treatments are: natural evolution of the coppice without thinning versus two thinning regimes with different intensity, both aimed to convert the stands into high forests. 1200 and 1600 stems per hectare were released in the conversion plots. Plots, control and treated in 2001, have been measured before and immediately after thinning and remeasured five years later. At the present time, stands are characterized by a basically monolayered structure, in which turkey oak is prevalent in term of basal area. Moreover in thinned areas, losses on the released shoots number are unimportant both in absolute and in percent terms; in control plot, instead, competition by plants of upper storey on the dominated ones means high values of mortality.

Simultaneous acquisition of 2D and 3D solid-state NMR experiments for sequential assignment of oriented membrane protein samples

International Nuclear Information System (INIS)

Gopinath, T.; Mote, Kaustubh R.; Veglia, Gianluigi

2015-01-01

We present a new method called DAISY (Dual Acquisition orIented ssNMR spectroScopY) for the simultaneous acquisition of 2D and 3D oriented solid-state NMR experiments for membrane proteins reconstituted in mechanically or magnetically aligned lipid bilayers. DAISY utilizes dual acquisition of sine and cosine dipolar or chemical shift coherences and long living 15 N longitudinal polarization to obtain two multi-dimensional spectra, simultaneously. In these new experiments, the first acquisition gives the polarization inversion spin exchange at the magic angle (PISEMA) or heteronuclear correlation (HETCOR) spectra, the second acquisition gives PISEMA-mixing or HETCOR-mixing spectra, where the mixing element enables inter-residue correlations through 15 N– 15 N homonuclear polarization transfer. The analysis of the two 2D spectra (first and second acquisitions) enables one to distinguish 15 N– 15 N inter-residue correlations for sequential assignment of membrane proteins. DAISY can be implemented in 3D experiments that include the polarization inversion spin exchange at magic angle via I spin coherence (PISEMAI) sequence, as we show for the simultaneous acquisition of 3D PISEMAI–HETCOR and 3D PISEMAI–HETCOR-mixing experiments

Computational and the real energy performance of a single-family residential building in Poland – an attempt to compare: a case study

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Kowalski Piotr

2017-01-01

Full Text Available The paper presents energy use for heating and ventilation (one of the energy performance components determined in three ways. A case of a single family building located near Wroclaw in Poland is analyzed. The first and the second variant are both computational and the third presents actual measured energy consumption. Computational variants are based on the Polish methodology for the EPC (the Energy Performance Certificate. This methodology is based on ‘the Energy Performance of Buildings Directive 2010/31/EU’. Energy use for heating and ventilation is calculated using monthly method presented in EN ISO 13790. In the first computational option standard input data (parameters such as indoor and outdoor air temperature etc. are taken from standards and regulations are implemented. In the second variant this input data are partially taken from measurements. The results of energy use from both computational variants are compared to the actual measured energy consumption. On the basis of this comparison the influence of three factors: solar radiation heat gains, building air tightness and the SCOP of the heat pump on energy use calculations are analyzed. Conclusions aim to point the differences between them and the actual energy consumption.

Grassland communities of traditional orchards in the Western Carpathians (Slovakia

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Hubert Zarnovican

2017-06-01

Full Text Available Traditional orchards are a valuable feature of the rural landscape and they are specific for regions with scattered settlement such as the Myjava hilly land and White Carpathians. Here, the permanent species-rich grasslands beneath trees were regularly managed in the traditional manner until some were replaced in the 1970’s and 80’s by intensively managed orchards, some of which were abandoned in the early 1990’s. Our 2011–2015 phytosociological research followed the standard Braun-Blanquet approach. We classified 178 phytosociological relevés recorded in orchard meadows (156 relevés, former intensively managed orchards (16 relevés, and two relevés from a semi-intensively grazed orchard. Traditionally managed orchard meadows were classified in the following five units: (i Pastinaco sativae-Arrhenatheretum elatioris – thermophilous variant, (ii Pastinaco sativae-Arrhenatheretum elatioris – transitional variant to Alchemillo-Arrhenatheretum elatioris, (iii Ranunculo bulbosi-Arrhenatheretum elatioris, (iv Onobrychido viciifoliae-Brometum erecti, and (v Brachypodio pinnati-Molinietum arundinaceae. Formerly intensively managed large-scale orchards were classified as Pastinaco sativae-Arrhenatheretum elatioris association and the semi-intensively grazed orchard as Lolio perennis-Cynosuretum cristati association. The species composition varies considerably due to tree-shading and different management treatments applied in the orchards, so the relevés of the delimited syntaxonomic units are not typical and have transitional character. Moisture, soil nutrients, and soil reaction were identified as the main environmental gradients influencing species composition. We tested four management treatments in direct gradient analysis and found that abandonment has the strongest effect on species composition. Comparison of grassland vegetation in the studied traditional orchards with that described in Germany reveals differences in species

Myxomycetes do Parque Zoobotânico de Teresina, Piauí, Brasil Myxomycetes of the Parque Zoobotânico - Teresina, Piauí, Brazil

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Márcia Percília Moura Parente Ponte

2003-03-01

Full Text Available Visando ampliar o conhecimento sobre a mixobiota do Piauí, foram realizadas coletas no Parque Zoobotânico de Teresina (05º 05' 12'' S, 42º 48' 48'' WG. A vegetação do Parque caracteriza-se como um cerradão com representantes da mata de cocais, que oferecem substratos potencialmente favoráveis ao desenvolvimento de Myxomycetes. Esporocarpos foram coletados no período chuvoso e início da estiagem (março a junho de 1999, identificados e depositados no herbário UFP (Universidade Federal de Pernambuco. Foram obtidas 101 amostras, correspondentes a 19 espécies, distribuídas nas famílias Ceratiomyxaceae (Ceratiomyxa fruticulosa (Mull. Macbr., Clastodermataceae (Clastoderma debaryanum Blytt, Cribrariaceae (Cribraria microcarpa (Schrad. Pers., C. violacea Rex, Dictydium canceilatum* (Batsch. Macbr., Enteridiaceae (Lycogala exiguum* Morgan., Physaraceae (Craterium aureum* (Schum. Rost., Physarum bogoriense* Racib., P. melleum (Berk. & Br. Massee, P. nucleatum Rex, P. pusilium* (Berk. & Curt. G. Lister, Trichiaceae (Arcyria denudata (L. Wett., A. cinerea (Bull. Pers., Hemitrichia calyculata (Speg. Farr, H. serpula (Scop. Rost., Metatrichia vesparium (Batsch Nann.-Brem., Perichaena depressa Lib. e Stemonitaceae (Comatricha typhoides (Bull. Rost., Stemonitis smithii Macbr.. Exceto H. calyculata e H. serpula, todos os táxons são referidos pela primeira vez para o município de Teresina; as espécies assinaladas com um asterisco constituem novos registros para o Piauí.Aiming to increase the knowledge about the myxobiota of Piauí State, Brazil, collections were done in the undertaken Zoobotanical Park of Teresina (05° 05' 12'' S, 42° 48' 48'' WG. The vegetation of the Park is a savanna ("cerradão" with "cocais" forest representative, offering substrates potentially favorable to the development of Myxomycetes. Sporocarps were collected in the rainy season (March to June 1999, identified and deposited at the UFP herbarium (Federal University

Palinologia de espécies de Solanum L. (Solanaceae A. Juss. ocorrentes nas restingas do Estado do Rio de Janeiro, Brasil Palynology of species of Solanum L. (Solanaceae A. Juss. from the restingas of Rio de Janeiro State, Brazil

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Carla Patrícia Rodrigues Batista-Franklim

2008-09-01

Full Text Available Foram estudados 21 táxons de Solanum L., com o objetivo de caracterizá-los palinologicamente e, assim, contribuir para a elaboração de um catálogo polínico da flora das restingas do Estado do Rio de Janeiro. Os táxons examinados foram Solanum affine Sendtn., Solanum americanum Mill. var. americanum,Solanum argenteum Dunal ex Poir., Solanum aturense Dunal, Solanum caavurana Vell., Solanum capsicoides All., Solanum carautae Carv., Solanum cordifolium Dunal, Solanum curvispinum Dunal, Solanum echidnaeforme Dunal, Solanum gardneri Sendtn.,Solanum indigoferum A. St.-Hil., Solanum insidiosum Mart., Solanum mauritianum Scop., Solanum paludosum Moric., Solanum paniculatum L., Solanum paratyense Vell., Solanum pseudoquina A.St.-Hil., Solanum sisymbriifolium Lam., Solanum torvum Sw., Solanum velleum Sw. Os grãos de pólen foram acetolisados, mensurados, descritos e fotomicrografados. A análise sob microscopia eletrônica de varredura foi utilizada, em grãos de pólen não acetolisados, para confirmar as descrições feitas sob microscopia de luz e, em alguns casos para confirmar as descrições de abertura e ornamentação. Constatou-se que os grãos de pólen são pequenos ou médios, isopolares, subprolatos a oblato-esferoidais, 3-colporados, sexina granulada, rugulado-granulada ou escabrada. Pela análise dos resultados obtidos pôde-se concluir que os táxons analisados apresentam certa heterogeneidade polínica, quanto à forma, aos atributos das aberturas e à ornamentação da sexina, podendo-se usar estes caracteres na taxonomia do gênero.In this study 21 taxa of Solanum L. were investigated for palynological characterization and to contribute to the Pollen Catalog of the Flora of the Rio de Janeiro restingas. The taxa analysed were Solanum affine Sendtn., Solanum americanum Mill. var. americanum,Solanum argenteum Dunal ex Poir., Solanum aturense Dunal, Solanum caavurana Vell., Solanum capsicoides All., Solanum carautae Carv., Solanum

ORION: a web server for protein fold recognition and structure prediction using evolutionary hybrid profiles.

Science.gov (United States)

Ghouzam, Yassine; Postic, Guillaume; Guerin, Pierre-Edouard; de Brevern, Alexandre G; Gelly, Jean-Christophe

2016-06-20

Protein structure prediction based on comparative modeling is the most efficient way to produce structural models when it can be performed. ORION is a dedicated webserver based on a new strategy that performs this task. The identification by ORION of suitable templates is performed using an original profile-profile approach that combines sequence and structure evolution information. Structure evolution information is encoded into profiles using structural features, such as solvent accessibility and local conformation -with Protein Blocks-, which give an accurate description of the local protein structure. ORION has recently been improved, increasing by 5% the quality of its results. The ORION web server accepts a single protein sequence as input and searches homologous protein structures within minutes. Various databases such as PDB, SCOP and HOMSTRAD can be mined to find an appropriate structural template. For the modeling step, a protein 3D structure can be directly obtained from the selected template by MODELLER and displayed with global and local quality model estimation measures. The sequence and the predicted structure of 4 examples from the CAMEO server and a recent CASP11 target from the 'Hard' category (T0818-D1) are shown as pertinent examples. Our web server is accessible at http://www.dsimb.inserm.fr/ORION/.

Molecular approach to characterize ectomycorrhizae fungi from Mediterranean pine stands in Portugal

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Carla Ragonezi

2013-01-01

Full Text Available Stone pine (Pinus pinea L., like other conifers, forms ectomycorrhizas (ECM, which have beneficial impact on plant growth in natural environments and forest ecosystems. An in vitro co-culture of stone pine microshoots with pure mycelia of isolated ECM sporocarps was used to overcome the root growth cessation not only in vitro but also to improve root development during acclimation phase. Pisolithus arhizus (Scop. Rauschert and Lactarius deliciosus (L. ex Fr. S.F. Gray fungi, were collected, pure cultured and used in in vitro co-culture with stone pine microshoots. Samples of P. arhizus and L. deliciosus for the in vitro co-cultures were collected from the pine stands southwest Portugal. The in situ characterization was based on their morphotypes. To confirm the identity of the collected material, ITS amplification was applied using the pure cultures derived from the sporocarps. Additionally, a molecular profile using PCR based genomic fingerprinting comparison was executed with other genera of Basidiomycetes and Ascomycetes. Our results showed the effectiveness of the techniques used to amplify DNA polymorphic sequences, which enhances the characterization of the genetic profile of ECM fungi and also provides an option to verify the fungus identity at any stage of plant mycorrhization.

Molecular approach to characterize ectomycorrhizae fungi from Mediterranean pine stands in Portugal

Science.gov (United States)

Ragonezi, Carla; Caldeira, A. Teresa; Martins, M. Rosário; Salvador, Cátia; Santos-Silva, Celeste; Ganhão, Elsa; Klimaszewska, Krystyna; Zavattieri, Amely

2013-01-01

Stone pine (Pinus pinea L.), like other conifers, forms ectomycorrhizas (ECM), which have beneficial impact on plant growth in natural environments and forest ecosystems. An in vitro co-culture of stone pine microshoots with pure mycelia of isolated ECM sporocarps was used to overcome the root growth cessation not only in vitro but also to improve root development during acclimation phase. Pisolithus arhizus (Scop.) Rauschert and Lactarius deliciosus (L. ex Fr.) S.F. Gray fungi, were collected, pure cultured and used in in vitro co-culture with stone pine microshoots. Samples of P. arhizus and L. deliciosus for the in vitro co-cultures were collected from the pine stands southwest Portugal. The in situ characterization was based on their morphotypes. To confirm the identity of the collected material, ITS amplification was applied using the pure cultures derived from the sporocarps. Additionally, a molecular profile using PCR based genomic fingerprinting comparison was executed with other genera of Basidiomycetes and Ascomycetes. Our results showed the effectiveness of the techniques used to amplify DNA polymorphic sequences, which enhances the characterization of the genetic profile of ECM fungi and also provides an option to verify the fungus identity at any stage of plant mycorrhization. PMID:24294266

Anti-methicillin-resistant Staphylococcus aureus (MRSA) activity of Rubiaceae, Fabaceae and Poaceae plants: A search for new sources of useful alternative antibacterials against MRSA infections.

Science.gov (United States)

Sharifi-Rad, M; Iriti, M; Sharifi-Rad, M; Gibbons, S; Sharifi-Rad, J

2016-08-29

In this study, we evaluated the effects of the extracts of the leaves of species from the Rubiaceae (Galium aparine L. and Asperula arvensis L.), Fabaceae (Lathyrus aphaca L. and Vicia narbonensis L.) and Poaceae (Digitaria sanguinalis (L.) Scop. and Hordeum murinum L.) plant families on a wide and extensive panel of isolated methicillin-resistant Staphylococcus aureus strains (MRSA). The effects of the methanolic leaf extracts of Rubiaceae, Fabaceae and Poaceae plants on MRSA were evaluated by the disc diffusion assay and the broth dilution method. Among a total of 177 S. aureus isolates, 92 (51.97%) were found to be methicillin-resistant in an antibiogram and this was confirmed by the presence of the mecA gene in polymerase chain reaction method. All MRSA isolates were sensitive to all extracts. There were dose-dependent inhibitions on tested microorganisms for all plant extracts which showed maximum inhibition zones at a concentration of 300 mg/L. L. aphaca, G. aparine and H. murinum exhibited the highest antibacterial activity on the MRSA strains compared to the positive control (P Fabaceae), G. aparine (Rubiaceae), and H. murinum (Poaceae) proved to have high antibacterial activity on MRSA isolates, thus representing promising antimicrobial agents in clinical settings.

Pentatomids associated with different forest species in Itaara, RS, Brazil

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Ervandil Corrêa Costa

2010-03-01

Full Text Available The objective of this study was to determine qualitatively and quantitatively the pentatomid fauna associated with the canopy of different native species during the period from September 2005 to September 2006. Insects were collected from among nine botanical species: Gochnatia polymorpha (Less. (cambará, Eugenia uniflora Berg. (pitangueira, Acca selowiana (Berg Burret (goiaba-da-serra, Psidium cattleianum Sabine (araçá, Baccharis spp., Solanaum mauritianum Scop. (fumo-bravo, Micanea cinerascens Miq. (passiquinho, Calliandra brevipes Bhent. (caliandra, and Schinus molle L. (aroeira located at Rodolfo da Costa Dam in Itaara, RS, Brazil. Samples were taken every two weeks with a conical funnel made of tin plate (2mm, 70cm in diameter at the rim and 63cm in height. One sample per botanical species for each sampling date was taken, by shaking the branches, ten times over the funnel. Samples were sent to the Entomology Laboratory of the Crop Protection Department of the Federal University of Santa Maria, where the material was analyzed. A total of nine Pentatomidae species were identified. Edessa rufomarginata (De Geer, 1773 was the species of highest ocurrence followed by Thyanta humilis (Bergroth, 1891. The botanical species S. mauritianum presented the greatest number of Pentatomidae species, with an occurrence of 26.9%.

THE EFFECT OF WATER EXTRACTS FROM WINTER SAVORY ON BLACK BEAN APHID MORTALITY

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Milena Rusin

2016-01-01

Full Text Available The aim of this study was to determine the effect of water extracts prepared from fresh and dry matter of winter savory (Satureja montana L. on mortality of wingless females and larvae of black bean aphid (Aphis fabae Scop.. The experiment was conducted in the laboratory, in six replicates. Dry extracts were prepared at concentration of 2%, 5% and 10%, while the fresh plant at concentration of 10%, 20% and 30%. Stomach poisoning of extracts was determined by soaking broad bean leaves in the respective solutions, and then determining mortality of wingless female and larvae feeding on leaves thus prepared at 12 hour intervals. The results of the experiment showed that the extract prepared from dry matter at the highest concentration (10%, as well as the extracts from fresh matter at concentration of 20% and 30% contributed to an increase in mortality of wingless female of black bean aphid. Meanwhile, extracts prepared from both dry and fresh matter at two highest concentrations caused an increase in mortality of larvae of this pest. Furthermore, with increasing concentrations of analysed extracts prepared from both fresh and dry matter of winter savory, their negative effect on wingless females and larvae usually increase.

Reproductive success of rose-ringed parakeets Psittacula krameri in a captive UK population.

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Lambert, Mark S; Massei, Giovanna; Bell, Jennifer; Berry, Leslie; Haigh, Carol; Cowan, David P

2009-11-01

Rose-ringed parakeets Psittacula krameri (Scop.) have recently become established in several European countries, with potential for significant negative economic and ecological impacts. However, in northern Europe the potential for reproductive output is largely unknown. In 2005 the authors established a captive outdoor colony in north-east England and examined breeding success over 2 years. In 2006 (19 pairs, 15 clutches) the average first clutch size was 3.6 (+/-0.3) eggs. Six clutches were infertile, and overall the colony produced 1.4 (+/-0.5) fertile eggs per pair. Eleven pairs produced a second clutch following removal of the first; seven were infertile, and overall productivity was 0.7 (+/-0.4) fertile eggs per pair. Unsuccessful pairs were rearranged or replaced. In 2007, overall productivity was 2.5 (+/-0.4) and 1.8 (+/-0.4) fertile eggs per pair for the first and second attempts respectively. For pairs that remained unchanged through 2006-2007, productivity was consistent between years and breeding attempts. Where food and nest sites were not limiting, clutch sizes in north-east England were similar to those in the native range, and consistent between first and second attempts. This has implications for the future expansion and management of the species. (c) Crown Copyright 2009. Reproduced with permission of Her Majesty's Stationery Office.

JAIL: a structure-based interface library for macromolecules.

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Günther, Stefan; von Eichborn, Joachim; May, Patrick; Preissner, Robert

2009-01-01

The increasing number of solved macromolecules provides a solid number of 3D interfaces, if all types of molecular contacts are being considered. JAIL annotates three different kinds of macromolecular interfaces, those between interacting protein domains, interfaces of different protein chains and interfaces between proteins and nucleic acids. This results in a total number of about 184,000 database entries. All the interfaces can easily be identified by a detailed search form or by a hierarchical tree that describes the protein domain architectures classified by the SCOP database. Visual inspection of the interfaces is possible via an interactive protein viewer. Furthermore, large scale analyses are supported by an implemented sequential and by a structural clustering. Similar interfaces as well as non-redundant interfaces can be easily picked out. Additionally, the sequential conservation of binding sites was also included in the database and is retrievable via Jmol. A comprehensive download section allows the composition of representative data sets with user defined parameters. The huge data set in combination with various search options allow a comprehensive view on all interfaces between macromolecules included in the Protein Data Bank (PDB). The download of the data sets supports numerous further investigations in macromolecular recognition. JAIL is publicly available at http://bioinformatics.charite.de/jail.

Development of the test facilities for the measurement of core flow and pressure distribution of SMART reactor

International Nuclear Information System (INIS)

Ko, Y.J.; Euh, D.J.; Youn, Y.J.; Chu, I.C.; Kwon, T.S.

2011-01-01

A design of SMART reactor has been developed, of which the primary system is composed of four internal circulation pumps, a core of 57 fuel assemblies, eight cassettes of steam generators, flow mixing head assemblies, and other internal structures. Since primary design features are very different from conventional reactors, the characteristics of flow and pressure distribution are expected to be different accordingly. In order to analyze the thermal margin and hydraulic design characteristics of SMART reactor, design quantification tests for flow and pressure distribution with a preservation of flow geometry are necessary. In the present study, the design feature of the test facility in order to investigate flow and pressure distribution, named “SCOP” is described. In order to preserve the flow distribution characteristics, the SCOP is linearly reduced with a scaling ratio of 1/5. The core flow rate of each fuel assembly is measured by a venturi meter attached in the lower part of the core simulator having a similarity of pressure drop for nominally scaled flow conditions. All the 57 core simulators and 8 S/G simulators are precisely calibrated in advance of assembling in test facilities. The major parameters in tests are pressures, differential pressures, and core flow distribution. (author)

Effect of Cultural Practices in Night on Weed Density and Weed Dry Matter

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M.H Rashed Mohasel

2011-01-01

Full Text Available Abstract In order to evaluate the response of weed seeds to light, two experiments, at two different locations were conducted at Ferdowsi university of Mashhad in 2009. At the first experiment, field was ploughed in day and night. Weed density was evaluated 70 d after plough, with 1×1 quadrate. At the second experiment, at night treatment, ploughing, potato planting and weeding with cultivator were done at night. Weed sampling was done twice at 43 and 130 days after planting with 1×1 quadrate and weeds were identified and counted. Result showed pigweed (Amaranthus retroflexus L., sowthistle (Sonchus oleraceus L., crabgrass (Digitaria sanguinalis (L. scop, jimsonweed (Datura stramonium L. and mallow (Hibiscus trionum L. did not observed at night plough, in contrast, night plough has no significance influence on common lambsquarters (Chenopodium album L., and black nightshade (Solanum nigrum L.. Only common lambsquarters had similar appearance in two treatments, indicating insusceptibility of this weed to time of plough. Interestingly, at the second experiment, result was very similar. Potato yield was higher at night treatment, but not significant. This research showed that some cultural practice like plough, planting and weeding with cultivator in night can reduce weed density and weed dry matter. Keywords: Germination, Time of plough, Sustainable weeds management, Light

Screening and Scoring of Antimicrobial and Biological Activities of Italian Vulnerary Plants against Major Oral Pathogenic Bacteria

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Gianmaria F. Ferrazzano

2013-01-01

Full Text Available This study aims to evaluate the activity of Italian vulnerary plants against the most important oral pathogenic bacteria. This estimate was accomplished through a fivefold process: (a a review of ethnobotanical and microbiological data concerning the Italian vulnerary plants; (b the development of a scoring system to rank the plants; (c the comparative assessment of microbiological properties; (d the assessment of potential cytotoxic effects on keratinocyte-like cells and gingival fibroblasts in culture by XTT cell viability assay; (e clinical evaluation of the most suitable plant extract as antibacterial agent in a home-made mouthwash. The study assays hexane (H, ethanol (E, and water (W extracts from 72 plants. The agar diffusion method was used to evaluate the activity against Streptococcus mutans, Streptococcus sobrinus, Lactobacillus casei, and Actinomyces viscosus. Twenty-two plants showed appreciable activity. The extracts showing the strongest antibacterial power were those from Cotinus coggygria Scop., Equisetum hyemale L., Helichrysum litoreum Guss, Juniperus communis L., and Phyllitis scolopendrium (L. Newman subsp. scolopendrium. The potential cytotoxic effect of these extracts was assessed. On the basis of these observations, a mouth-rinse containing the ethanolic extract of H. litoreum has been tested in vivo, resulting in reduction of the salivary concentration of S. mutans.

Screening and Scoring of Antimicrobial and Biological Activities of Italian Vulnerary Plants against Major Oral Pathogenic Bacteria

Science.gov (United States)

Ferrazzano, Gianmaria F.; Roberto, Lia; Catania, Maria Rosaria; Chiaviello, Angela; De Natale, Antonino; Roscetto, Emanuela; Pinto, Gabriele; Pollio, Antonino; Ingenito, Aniello; Palumbo, Giuseppe

2013-01-01

This study aims to evaluate the activity of Italian vulnerary plants against the most important oral pathogenic bacteria. This estimate was accomplished through a fivefold process: (a) a review of ethnobotanical and microbiological data concerning the Italian vulnerary plants; (b) the development of a scoring system to rank the plants; (c) the comparative assessment of microbiological properties; (d) the assessment of potential cytotoxic effects on keratinocyte-like cells and gingival fibroblasts in culture by XTT cell viability assay; (e) clinical evaluation of the most suitable plant extract as antibacterial agent in a home-made mouthwash. The study assays hexane (H), ethanol (E), and water (W) extracts from 72 plants. The agar diffusion method was used to evaluate the activity against Streptococcus mutans, Streptococcus sobrinus, Lactobacillus casei, and Actinomyces viscosus. Twenty-two plants showed appreciable activity. The extracts showing the strongest antibacterial power were those from Cotinus coggygria Scop., Equisetum hyemale L., Helichrysum litoreum Guss, Juniperus communis L., and Phyllitis scolopendrium (L.) Newman subsp. scolopendrium. The potential cytotoxic effect of these extracts was assessed. On the basis of these observations, a mouth-rinse containing the ethanolic extract of H. litoreum has been tested in vivo, resulting in reduction of the salivary concentration of S. mutans. PMID:24302963

Camps 2.0: exploring the sequence and structure space of prokaryotic, eukaryotic, and viral membrane proteins.

Science.gov (United States)

Neumann, Sindy; Hartmann, Holger; Martin-Galiano, Antonio J; Fuchs, Angelika; Frishman, Dmitrij

2012-03-01

Structural bioinformatics of membrane proteins is still in its infancy, and the picture of their fold space is only beginning to emerge. Because only a handful of three-dimensional structures are available, sequence comparison and structure prediction remain the main tools for investigating sequence-structure relationships in membrane protein families. Here we present a comprehensive analysis of the structural families corresponding to α-helical membrane proteins with at least three transmembrane helices. The new version of our CAMPS database (CAMPS 2.0) covers nearly 1300 eukaryotic, prokaryotic, and viral genomes. Using an advanced classification procedure, which is based on high-order hidden Markov models and considers both sequence similarity as well as the number of transmembrane helices and loop lengths, we identified 1353 structurally homogeneous clusters roughly corresponding to membrane protein folds. Only 53 clusters are associated with experimentally determined three-dimensional structures, and for these clusters CAMPS is in reasonable agreement with structure-based classification approaches such as SCOP and CATH. We therefore estimate that ∼1300 structures would need to be determined to provide a sufficient structural coverage of polytopic membrane proteins. CAMPS 2.0 is available at http://webclu.bio.wzw.tum.de/CAMPS2.0/. Copyright © 2011 Wiley Periodicals, Inc.

Improving Protein Fold Recognition by Deep Learning Networks

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Jo, Taeho; Hou, Jie; Eickholt, Jesse; Cheng, Jianlin

2015-12-01

For accurate recognition of protein folds, a deep learning network method (DN-Fold) was developed to predict if a given query-template protein pair belongs to the same structural fold. The input used stemmed from the protein sequence and structural features extracted from the protein pair. We evaluated the performance of DN-Fold along with 18 different methods on Lindahl’s benchmark dataset and on a large benchmark set extracted from SCOP 1.75 consisting of about one million protein pairs, at three different levels of fold recognition (i.e., protein family, superfamily, and fold) depending on the evolutionary distance between protein sequences. The correct recognition rate of ensembled DN-Fold for Top 1 predictions is 84.5%, 61.5%, and 33.6% and for Top 5 is 91.2%, 76.5%, and 60.7% at family, superfamily, and fold levels, respectively. We also evaluated the performance of single DN-Fold (DN-FoldS), which showed the comparable results at the level of family and superfamily, compared to ensemble DN-Fold. Finally, we extended the binary classification problem of fold recognition to real-value regression task, which also show a promising performance. DN-Fold is freely available through a web server at http://iris.rnet.missouri.edu/dnfold.

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures

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Dopazo Joaquín

2007-05-01

Full Text Available Abstract Background Advances in structural biology, including structural genomics, have resulted in a rapid increase in the number of experimentally determined protein structures. However, about half of the structures deposited by the structural genomics consortia have little or no information about their biological function. Therefore, there is a need for tools for automatically and comprehensively annotating the function of protein structures. We aim to provide such tools by applying comparative protein structure annotation that relies on detectable relationships between protein structures to transfer functional annotations. Here we introduce two programs, AnnoLite and AnnoLyze, which use the structural alignments deposited in the DBAli database. Description AnnoLite predicts the SCOP, CATH, EC, InterPro, PfamA, and GO terms with an average sensitivity of ~90% and average precision of ~80%. AnnoLyze predicts ligand binding site and domain interaction patches with an average sensitivity of ~70% and average precision of ~30%, correctly localizing binding sites for small molecules in ~95% of its predictions. Conclusion The AnnoLite and AnnoLyze programs for comparative annotation of protein structures can reliably and automatically annotate new protein structures. The programs are fully accessible via the Internet as part of the DBAli suite of tools at http://salilab.org/DBAli/.

Improving Protein Fold Recognition by Deep Learning Networks.

Science.gov (United States)

Jo, Taeho; Hou, Jie; Eickholt, Jesse; Cheng, Jianlin

2015-12-04

For accurate recognition of protein folds, a deep learning network method (DN-Fold) was developed to predict if a given query-template protein pair belongs to the same structural fold. The input used stemmed from the protein sequence and structural features extracted from the protein pair. We evaluated the performance of DN-Fold along with 18 different methods on Lindahl's benchmark dataset and on a large benchmark set extracted from SCOP 1.75 consisting of about one million protein pairs, at three different levels of fold recognition (i.e., protein family, superfamily, and fold) depending on the evolutionary distance between protein sequences. The correct recognition rate of ensembled DN-Fold for Top 1 predictions is 84.5%, 61.5%, and 33.6% and for Top 5 is 91.2%, 76.5%, and 60.7% at family, superfamily, and fold levels, respectively. We also evaluated the performance of single DN-Fold (DN-FoldS), which showed the comparable results at the level of family and superfamily, compared to ensemble DN-Fold. Finally, we extended the binary classification problem of fold recognition to real-value regression task, which also show a promising performance. DN-Fold is freely available through a web server at http://iris.rnet.missouri.edu/dnfold.

Черноголовник многобрачный (Poterium polygamum Waldst et kit. – перспективный пастбищный таксон для Среднего Приднестровья Украины и гипотетически для Молдовы

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ПУЮ В. Л.

2015-12-01

Full Text Available The article includes research results regarding the introduction, biological features and pasture productivity of garden burnet with the annual application of N45. Sainfoin (Onobrychis is accepted as a constitutional prototype of garden burnet. The main study results include: the transfer of garden burnet from the Crimea to the south-western part of the Ukrainian forest steppe (a distance of 750 km has not changed life expectancy of plants – 10-12 years, just prolonged the annual growing season by 10-15 days. Garden burnet begins to bloom in late May, its seed sripen in mid-June and the vegetation period lasts 80-90 days in the Crimea. In the central part of Transnistria it blooms in late June and its fruits ripen in mid-July. The advantage in pasture productivity of sainfoin over garden burnet in the south-western region of the Ukrainian forest-steppe may be considered as a tendency, which is statistically unreliable. The most significant feature of garden burnet as compared to manyother pasture crops, including sainfoin, is that its root mass exceeds by1.78 times it stop mass, while this index equals to1.48 in sainfoin. This advantage is especially important for the coastal zone of Transnistria – the territory, which is mostly used for sheep grazing and where the soil is not sufficiently protected against erosion. Therefore, the introduction of garden burnet in the central part of Transnistria is possible and advisable. Реферат. В статье изложены результаты исследований интродукции, биологических особенностей и пастбищной продуктивности черноголовника многобрачного при ежегодном внесении N45. В качестве конституционного прототипа черноголовника принят эспарцет. Основные результаты исследований: �

Assessment and prediction of the invasiveness of some alien plants in conditions of climate change in the steppe Dnieper region

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Y. V. Lykholat

2017-02-01

Full Text Available The flora of the steppe Dnieper region is characterized by an abundance of naturalized alien species, some of which colonised over the last decade. Climate change, associated primarily with increasing temperature, became clearly manifested in this period. We tested the hypothesis that there is an association between climate change and the initiation of invasiveness of some alien plant species in the steppe Dnieper region. For this purpose, comparative studies of the distribution boundaries of naturalized alien trees, shrubs and herbaceous plants were conducted. Along the research route numerous 5–10-year-old broadleaf linden trees (Tilia platyphyllos Scop. were found in the man-made plantation communities of Dnipro city in areas with moist soil; seeded undergrowth was located at a significant distance from the adult linden plants. Numerous groups of young 7–10-year-old plants of the smoke trees (Cotinus coggygria Scop., which had a seed origin, were found in the shelterbelt and urban recreational plantations. Young 10–12-year-old virginal and generative plants of the black cherry (Padus serotina Ehrh. were found in large numbers in both the semi-natural and artificial plant communities at great distances from the adult trees. The alien plant species common hackberry (Celtis occidentalis L. showed the ability to form fairly sparse seminal seedlings, which was presented by the plants at the age of 4–7 years in both the natural and urban plant communities. The perennial herbaceous plant common milkweed (Asclepias syriaca L. was found in the course of the research in ruderal habitats, urban plant communities, and also in the agrocoenoses. The common milkweed reached its greatest abundance in fields of winter crops, where the spread of this species was accompanied by a sharp decrease in the number of other species of segetal plants. Our study results confirm that the extension of the distribution boundaries of alien species over the last

Evaluation of wild animals browsing preferences in forage resources

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Giovanni Argenti

2017-09-01

Full Text Available Excessive presence of wild ungulates can produce negative effects on herbaceous crops or woody species, and to face this problem, habitat improvements are often performed to recreate suitable environments for a given animal species and to attract animals far from cultivated crops. A common example of these interventions is represented by grassland restoration and to evaluate the real animal preferences on restored forage resources a proper trial was established in a hilly area of Tuscany (central Italy, inside the historical Park of Pratolino, near Florence. The trial compared six different forage species or mixtures sown in plots: vegetal material was represented by two pure stands (Onobrychis viciifolia and Medicago sativa and four mixtures differing in number and kind of used species. Plots were utilised only by wild animals occurring in the area. Data collection consisted of botanical samples in each plot in different periods to obtain the percent presence of each species. At the same time, a visual estimation of animal intake on all occurring species was performed to obtain the browsing ratio of single species and overall defoliation rate for each species/mixture. Moreover, six camera traps were placed on the boundary of the experimental site to record videos of wild animals browsing in the area for identification of animals actually occurring on different plots and for comparison of these results with botanical data. Vegetation surveys permitted a proper evaluation of animals intake and of their feeding preferences. In general, sown species performed a major role in animal browsing, even if in some periods also a few native species (such as Plantago lanceolata or Cichorium intybus were utilised in a strong way, depending on vegetation context and existing biomass. Camera traps results permitted the identification of browsing animal species (mainly represented by roe deer and plots frequentation resulted to be highly related to animal

Polybrominated diphenyl ethers in birds of prey from Northern China.

Science.gov (United States)

Chen, Da; Mai, Bixian; Song, Jie; Sun, Quanhui; Luo, Yong; Luo, Xiaojun; Zeng, Eddy Y; Hale, Robert C

2007-03-15

Birds of prey from Northern China (Beijing area) were examined for polybrominated diphenyl ethers (PBDEs). A total of 47 specimens from eight different species were analyzed. Muscle and liver were analyzed separately for each bird. Kidneys were pooled by species. Common kestrels exhibited the highest PBDE levels (mean muscle and liver concentrations of 12300 and 12200 ng/g lipid weight, respectively), with maxima in an individual bird of 31700 in muscle and 40900 ng/g lw in liver. Congener profiles differed between some species, but were generally dominated by the more brominated congeners (e.g., BDE-153, -209, -183, -207). BDE-209 was especially elevated compared to other published reports. Interspecies differences in congener concentrations and profiles may be due to diet, behavior, or biotransformation capacities. BDE-209 was detected in 79.4% of the samples. Common kestrels contained the highest BDE-209 levels (mean/maxima of 2150/6220 in muscle and 2870/12200 ng/g lw in liver). BDE-209 was the dominant congener in tissues from some buzzards, scops owls, and long-eared owls. It was the second most abundant congener in common kestrels. The remarkable levels and dominance of BDE-209 may relate to significant production, usage, or disposal of deca-containing products in China. These observations reinforce the growing view that organisms using terrestrial food chains may have greater exposure to BDE-209.

Multiple graph regularized protein domain ranking.

Science.gov (United States)

Wang, Jim Jing-Yan; Bensmail, Halima; Gao, Xin

2012-11-19

Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain database. Recently, graph regularized ranking that exploits the global structure of the graph defined by the pairwise similarities has been proposed. However, the existing graph regularized ranking methods are very sensitive to the choice of the graph model and parameters, and this remains a difficult problem for most of the protein domain ranking methods. To tackle this problem, we have developed the Multiple Graph regularized Ranking algorithm, MultiG-Rank. Instead of using a single graph to regularize the ranking scores, MultiG-Rank approximates the intrinsic manifold of protein domain distribution by combining multiple initial graphs for the regularization. Graph weights are learned with ranking scores jointly and automatically, by alternately minimizing an objective function in an iterative algorithm. Experimental results on a subset of the ASTRAL SCOP protein domain database demonstrate that MultiG-Rank achieves a better ranking performance than single graph regularized ranking methods and pairwise similarity based ranking methods. The problem of graph model and parameter selection in graph regularized protein domain ranking can be solved effectively by combining multiple graphs. This aspect of generalization introduces a new frontier in applying multiple graphs to solving protein domain ranking applications.

Performance Test of Core Protection and Monitoring Algorithm with DLL for SMART Simulator Implementation

International Nuclear Information System (INIS)

Koo, Bonseung; Hwang, Daehyun; Kim, Keungkoo

2014-01-01

A multi-purpose best-estimate simulator for SMART is being established, which is intended to be used as a tool to evaluate the impacts of design changes on the safety performance, and to improve and/or optimize the operating procedure of SMART. In keeping with these intentions, a real-time model of the digital core protection and monitoring systems was developed and the real-time performance of the models was verified for various simulation scenarios. In this paper, a performance test of the core protection and monitoring algorithm with a DLL file for the SMART simulator implementation was performed. A DLL file of the simulator application code was made and several real-time evaluation tests were conducted for the steady-state and transient conditions with simulated system variables. A performance test of the core protection and monitoring algorithms for the SMART simulator was performed. A DLL file of the simulator version code was made and several real-time evaluation tests were conducted for various scenarios with a DLL file and simulated system variables. The results of all test cases showed good agreement with the reference results and some features caused by algorithm change were properly reflected to the DLL results. Therefore, it was concluded that the SCOPS S SIM and SCOMS S SIM algorithms and calculational capabilities are appropriate for the core protection and monitoring program in the SMART simulator

Antifungal and Herbicidal Effects of Fruit Essential Oils of Four Myrtus communis Genotypes.

Science.gov (United States)

Kordali, Saban; Usanmaz, Ayse; Cakir, Ahmet; Komaki, Amanmohammad; Ercisli, Sezai

2016-01-01

The chemical composition of the essential oils isolated by hydrodistillation from the fruits of four selected Myrtus communis L. genotypes from Turkey was characterized by GC-FID and GC/MS analyses. 1,8-Cineole (29.20-31.40%), linalool (15.67-19.13%), α-terpineol (8.40-18.43%), α-pinene (6.04-20.71%), and geranyl acetate (3.98-7.54%) were found to be the major constituents of the fruit essential oils of all M. communis genotypes investigated. The oils were characterized by high amounts of oxygenated monoterpenes, representing 73.02-83.83% of the total oil compositions. The results of the fungal growth inhibition assays showed that the oils inhibited the growth of 19 phytopathogenic fungi. However, their antifungal activity was generally lower than that of the commercial pesticide benomyl. The herbicidal effects of the oils on the seed germination and seedling growth of Amaranthus retroflexus L., Chenopodium album L., Cirsium arvense (L.) Scop., Lactuca serriola L., and Rumex crispus L. were also determined. The oils completely or partly inhibited the seed germinations and seedling growths of the plants. The findings of the present study suggest that the M. communis essential oils might have potential to be used as natural herbicides as well as fungicides. Copyright © 2016 Verlag Helvetica Chimica Acta AG, Zürich.

A discriminative method for family-based protein remote homology detection that combines inductive logic programming and propositional models.

Science.gov (United States)

Bernardes, Juliana S; Carbone, Alessandra; Zaverucha, Gerson

2011-03-23

Remote homology detection is a hard computational problem. Most approaches have trained computational models by using either full protein sequences or multiple sequence alignments (MSA), including all positions. However, when we deal with proteins in the "twilight zone" we can observe that only some segments of sequences (motifs) are conserved. We introduce a novel logical representation that allows us to represent physico-chemical properties of sequences, conserved amino acid positions and conserved physico-chemical positions in the MSA. From this, Inductive Logic Programming (ILP) finds the most frequent patterns (motifs) and uses them to train propositional models, such as decision trees and support vector machines (SVM). We use the SCOP database to perform our experiments by evaluating protein recognition within the same superfamily. Our results show that our methodology when using SVM performs significantly better than some of the state of the art methods, and comparable to other. However, our method provides a comprehensible set of logical rules that can help to understand what determines a protein function. The strategy of selecting only the most frequent patterns is effective for the remote homology detection. This is possible through a suitable first-order logical representation of homologous properties, and through a set of frequent patterns, found by an ILP system, that summarizes essential features of protein functions.

Gözeli yöresindeki (Elazığ meşe (Quercus sp . ormanlarına asılan yapay yuvalardaki böcekçil kuşların kuluçka faaliyetleri

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Özden YALÇIN

2015-12-01

Full Text Available Elazığ Orman Bölge Müdürlüğü sınırları içerisinde yer alan Elazığ ili Sivrice ilçesi Gözeli mevkiinde bulunan meşe ormanlarında, 2009-2013 yılları arasında gerçekleştirilen bu çalışma ile farklı bakılara asılan farklı renkteki küçük ve büyük yuva sandıklarında yuva yapan kuş türleri ve bu türlerin kuluçka faaliyetlerinin saptanması amaçlanmıştır. Kuluçkalarını başarı ile tamamlayan kuş türlerinin Otus scops haricindeki türlerin hepsi, hem küçük hem de büyük yuvaları kullanmıştır. Öncelikli yuva tercihleri şu şekilde olmuştur: Parus major küçük yuvaların %66,4’ünde, Cyanistes caeruleus büyük yuvaların %16,3’ünde, Sitta europaea büyük yuvaların %23,2’sinde, Petronia petronia küçük yuvaların %15,2’sinde, Passer domesticus büyük yuvaların %27,9’unda, Otus scops ise sadece büyük yuvaların %7’sinde yuvalanmıştır. Asılan yuvalarda başarılı kuluçka durumunun farklı kuş türlerine göre bakı tercihleri arasında farklılıklar bulunmaktadır. Büyük yuvalarda güney (%39,5, doğu (%34,9, kuzey (%16,3 ve batı (%9,3’dır. Küçük yuvalarda ise güney (%33,2, doğu (%27,2, batı (%20,8 ve kuzey (%18,8’dir.Farklı renklerde asılan kuş yuvalarında başarılı kuluçka yapan kuş türlerinin renk tercihleri değişmektedir. Büyük yuvalarda, Parus major yeşil yuvaları, Cyanistes caeruleus sarı yuvaları, Sitta europaea turuncu yuvaları, Petronia petronia sarı ve mavi yuvaları, Passer domesticus sarı, mavi ve boyanmamış yuvaları daha fazla tercih etmişlerdir. Kuşların yuva tercihinde yuva boyutu, renk ve bakının türler arası farklılık gösterdiği ortaya çıkmıştır. Bir türün daha yoğun bulunduğu alanda, o türe uygun yuva tercihinin gerçekleştirilerek asılması biyolojik mücadele kapsamında daha verimli sonuçlar elde edilmesini sağlayacaktır.

Optimum yields of dibenzylbutyrolactone-type lignans from Cynareae fruits, during their ripening, germination and enzymatic hydrolysis processes, determined by on-line chromatographic methods.

Science.gov (United States)

Szokol-Borsodi, Lilla; Sólyomváry, Anna; Molnár-Perl, Ibolya; Boldizsár, Imre

2012-01-01

Dibenzylbutyrolactone-type lignans are the physiologically active constituents of the achene fruits of Cynareae. These lignans occur in glycoside/aglycone forms: in the highest quantity of the arctiin/arctigenin, matairesinoside/matairesinol and tracheloside/trachelogenin pairs found in the fruits of Arctium lappa L., Centaurea scabiosa L. and Cirsium arvense (L.) Scop. To optimise the extraction yield of the arctiin/arctigenin, matairesinoside/matairesinol and tracheloside/trachelogenin glycoside/aglycone pairs, from the fruits of Arctium lappa, Centaurea scabiosa and Cirsium arvense, under the ripening, germination and enzymatic hydrolysis processes of the fruits. Identification and quantification of lignans were performed with on-line gas chromatography-mass spectrometry (GC-MS) and with high performance liquid chromatography (HPLC), both with UV and mass selective detections (HPLC-UV/MS). As novelties to the field it was confirmed that: (i) the unripe fruits provide a high amount of lignans, similar to the ripe fruit; (ii) the fruits of Arctium lappa and Cirsium arvense do have glycosidase activity to hydrolyse their lignan glycosides into free lignans; (iii) the glycosidase of Centaurea scabiosa fruit becomes activated under its germination process only; and (iv) the overwhelming part of the fruits lignan contents (80-94%) in all three species are accumulated in the embryo. The best sources of (i) lignan aglycones are the enzyme-hydrolysed embryos, separating spontaneously during the germination process, and (ii) lignan glycosides are the unripe fruits. Copyright © 2012 John Wiley & Sons, Ltd.

Testing statistical significance scores of sequence comparison methods with structure similarity

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Leunissen Jack AM

2006-10-01

Full Text Available Abstract Background In the past years the Smith-Waterman sequence comparison algorithm has gained popularity due to improved implementations and rapidly increasing computing power. However, the quality and sensitivity of a database search is not only determined by the algorithm but also by the statistical significance testing for an alignment. The e-value is the most commonly used statistical validation method for sequence database searching. The CluSTr database and the Protein World database have been created using an alternative statistical significance test: a Z-score based on Monte-Carlo statistics. Several papers have described the superiority of the Z-score as compared to the e-value, using simulated data. We were interested if this could be validated when applied to existing, evolutionary related protein sequences. Results All experiments are performed on the ASTRAL SCOP database. The Smith-Waterman sequence comparison algorithm with both e-value and Z-score statistics is evaluated, using ROC, CVE and AP measures. The BLAST and FASTA algorithms are used as reference. We find that two out of three Smith-Waterman implementations with e-value are better at predicting structural similarities between proteins than the Smith-Waterman implementation with Z-score. SSEARCH especially has very high scores. Conclusion The compute intensive Z-score does not have a clear advantage over the e-value. The Smith-Waterman implementations give generally better results than their heuristic counterparts. We recommend using the SSEARCH algorithm combined with e-values for pairwise sequence comparisons.

Timiş River Flooding in Banat (Romania in 2005

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Codea Daniel Mihuţ

2013-12-01

Full Text Available Inundaţii în Banat (România, datorate râului Timiş în 2005. Inundaţiile care au avut loc în bazinul Banat constituie un fenomen natural frecvent pe cursurile de râu din acest spaţiu hidrografic, unde sunt 1.085 km de curs de râu, care sunt îndiguiți, precum și numeroase lucrări hidrotehnice și de gospodărire a apei. Deși aceste lucrări sunt bine realizate și au ca scop apărarea împotriva inundațiilor, o analiză a acestor fenomene naturale petrecute în Banat, scot în evidență faptul că pe un interval de aproximativ 250 ani, periodicitatea acestor inundaţii majore este de circa 30 ani, existând şi cazuri când aceste fenomene se produc la intervale de numai câţiva ani, cum este şi exemplul inundaţiilor din 2005 petrecute la doar cinci ani după cele din 2000. Aproape în toate lunile anului 2005 (februarie-septembrie s-au produs depăşiri ale cotelor de apărare pe cursurile de apă din țară, cele mai importante inundaţii înregistrate în Banat au fost în luna aprilie.

Multiple graph regularized protein domain ranking

KAUST Repository

Wang, Jim Jing-Yan

2012-11-19

Background: Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain database. Recently, graph regularized ranking that exploits the global structure of the graph defined by the pairwise similarities has been proposed. However, the existing graph regularized ranking methods are very sensitive to the choice of the graph model and parameters, and this remains a difficult problem for most of the protein domain ranking methods.Results: To tackle this problem, we have developed the Multiple Graph regularized Ranking algorithm, MultiG-Rank. Instead of using a single graph to regularize the ranking scores, MultiG-Rank approximates the intrinsic manifold of protein domain distribution by combining multiple initial graphs for the regularization. Graph weights are learned with ranking scores jointly and automatically, by alternately minimizing an objective function in an iterative algorithm. Experimental results on a subset of the ASTRAL SCOP protein domain database demonstrate that MultiG-Rank achieves a better ranking performance than single graph regularized ranking methods and pairwise similarity based ranking methods.Conclusion: The problem of graph model and parameter selection in graph regularized protein domain ranking can be solved effectively by combining multiple graphs. This aspect of generalization introduces a new frontier in applying multiple graphs to solving protein domain ranking applications. 2012 Wang et al; licensee BioMed Central Ltd.

Multiple graph regularized protein domain ranking

KAUST Repository

Wang, Jim Jing-Yan; Bensmail, Halima; Gao, Xin

2012-01-01

Background: Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain database. Recently, graph regularized ranking that exploits the global structure of the graph defined by the pairwise similarities has been proposed. However, the existing graph regularized ranking methods are very sensitive to the choice of the graph model and parameters, and this remains a difficult problem for most of the protein domain ranking methods.Results: To tackle this problem, we have developed the Multiple Graph regularized Ranking algorithm, MultiG-Rank. Instead of using a single graph to regularize the ranking scores, MultiG-Rank approximates the intrinsic manifold of protein domain distribution by combining multiple initial graphs for the regularization. Graph weights are learned with ranking scores jointly and automatically, by alternately minimizing an objective function in an iterative algorithm. Experimental results on a subset of the ASTRAL SCOP protein domain database demonstrate that MultiG-Rank achieves a better ranking performance than single graph regularized ranking methods and pairwise similarity based ranking methods.Conclusion: The problem of graph model and parameter selection in graph regularized protein domain ranking can be solved effectively by combining multiple graphs. This aspect of generalization introduces a new frontier in applying multiple graphs to solving protein domain ranking applications. 2012 Wang et al; licensee BioMed Central Ltd.

Five new species of jawfishes (Opistognathus: Opistognathidae) from the western Atlantic Ocean

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Smith-Vaniz, W.F.

1997-01-01

Synonymies, diagnoses, descriptions, illustrations, and spot distribution maps are given for ten species of Opistognathus, including all western Atlantic species that have a cirrus on their anterior nostrils. Three deep-water species lacking nasal cirri are also treated, including O. leprocarus n. sp. (Bahamas and Lesser Antilles), O. melachasme (Yucatan), and O. nothus n. sp. (North Carolina, Gulf of Mexico and Cuba); the latter two species were originally thought to represent different sexes of the same species. The O. macrognathus species group is diagnosed primarily by having sexually dimorphic jaws and sexually dichromatic maxillary markings, and includes the eastern Pacific O. scops and the following five western Atlantic species: O. macrognathus (Florida, Gulf of Mexico, and Bahamas to northern South America), O. brasiliensis n. sp. (southern Brazil), O. cuverii (southern Brazil), O. robinsi n. sp. (South Carolina, Florida, Bahamas, and Gulf of Mexico), and O. signatus n. sp. (Nicaragua, Panama, and northern South America). Opistognathus robinsi and O. signatus are very similar morphologically and here recognized as allopatric sister-species but the possibility exists that their disjunct continental distributions may be a collecting artifact. The broadly distributed and shallow-water species Opistognathus whitehurstii and O. maxillosus are superficially similar to some members of the O. macrognathus species group, including having cirri on their anterior nostrils, but differ most obviously in having non-sexually dimorphic jaws and more numerous cephalic sensory pores. An identification key is provided for all known western Atlantic species of Opistognathus.

Improving model construction of profile HMMs for remote homology detection through structural alignment

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Zaverucha Gerson

2007-11-01

Full Text Available Abstract Background Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs are one of the most successful approaches in addressing this important problem. pHMM packages present a relatively small computational cost, and perform particularly well at recognizing remote homologies. This raises the question of whether structural alignments could impact the performance of pHMMs trained from proteins in the Twilight Zone, as structural alignments are often more accurate than sequence alignments at identifying motifs and functional residues. Next, we assess the impact of using structural alignments in pHMM performance. Results We used the SCOP database to perform our experiments. Structural alignments were obtained using the 3DCOFFEE and MAMMOTH-mult tools; sequence alignments were obtained using CLUSTALW, TCOFFEE, MAFFT and PROBCONS. We performed leave-one-family-out cross-validation over super-families. Performance was evaluated through ROC curves and paired two tailed t-test. Conclusion We observed that pHMMs derived from structural alignments performed significantly better than pHMMs derived from sequence alignment in low-identity regions, mainly below 20%. We believe this is because structural alignment tools are better at focusing on the important patterns that are more often conserved through evolution, resulting in higher quality pHMMs. On the other hand, sensitivity of these tools is still quite low for these low-identity regions. Our results suggest a number of possible directions for improvements in this area.

Improving model construction of profile HMMs for remote homology detection through structural alignment.

Science.gov (United States)

Bernardes, Juliana S; Dávila, Alberto M R; Costa, Vítor S; Zaverucha, Gerson

2007-11-09

Remote homology detection is a challenging problem in Bioinformatics. Arguably, profile Hidden Markov Models (pHMMs) are one of the most successful approaches in addressing this important problem. pHMM packages present a relatively small computational cost, and perform particularly well at recognizing remote homologies. This raises the question of whether structural alignments could impact the performance of pHMMs trained from proteins in the Twilight Zone, as structural alignments are often more accurate than sequence alignments at identifying motifs and functional residues. Next, we assess the impact of using structural alignments in pHMM performance. We used the SCOP database to perform our experiments. Structural alignments were obtained using the 3DCOFFEE and MAMMOTH-mult tools; sequence alignments were obtained using CLUSTALW, TCOFFEE, MAFFT and PROBCONS. We performed leave-one-family-out cross-validation over super-families. Performance was evaluated through ROC curves and paired two tailed t-test. We observed that pHMMs derived from structural alignments performed significantly better than pHMMs derived from sequence alignment in low-identity regions, mainly below 20%. We believe this is because structural alignment tools are better at focusing on the important patterns that are more often conserved through evolution, resulting in higher quality pHMMs. On the other hand, sensitivity of these tools is still quite low for these low-identity regions. Our results suggest a number of possible directions for improvements in this area.

Cum se traduce ‘rușinea’. Abordare traductologică (I

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Magda Jeanrenaud

2017-03-01

Full Text Available Pornind de la sfera semantică și lexicală a conceptelor honte (limba franceză și, respectiv, rușine (limba română, îmi propun să examinez modul cum se traduce acesta în limba română pornind de la un studiu de caz. În acest scop, voi încerca să elaborez un studiu traductologic comparativ al lucrării lui Boris Cyrulnik, intitulată Mourir de dire. La honte (Éditions Odile Jacob, Paris, 2010 și a traducerii sale în limba română, intitulată Mai bine mor decît să spun. Rușinea (traducere din limba franceză de Valentin Protopopescu, Editura Trei, col. „Psihologia pentru toți”, București, 2012. Textul lui Cyrulnik are o particularitate: oscilează între factura literară și cea a unui text specializat. Din acest punct de vedere, transpunerea lui pune la încercare teoriile funcționaliste ale traducerii și, mai ales, teoria skopos-ului elaborată de Katharina Reiss și Hans Vermeer: este interesant de analizat cum „decodează” traducătorul „intenționalitatea” acestui tip de text, totuși specializat, cum decide el să transpună sfera sa semantică și lexicală în limba română.

Multiple graph regularized protein domain ranking

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Wang Jim

2012-11-01

Full Text Available Abstract Background Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain database. Recently, graph regularized ranking that exploits the global structure of the graph defined by the pairwise similarities has been proposed. However, the existing graph regularized ranking methods are very sensitive to the choice of the graph model and parameters, and this remains a difficult problem for most of the protein domain ranking methods. Results To tackle this problem, we have developed the Multiple Graph regularized Ranking algorithm, MultiG-Rank. Instead of using a single graph to regularize the ranking scores, MultiG-Rank approximates the intrinsic manifold of protein domain distribution by combining multiple initial graphs for the regularization. Graph weights are learned with ranking scores jointly and automatically, by alternately minimizing an objective function in an iterative algorithm. Experimental results on a subset of the ASTRAL SCOP protein domain database demonstrate that MultiG-Rank achieves a better ranking performance than single graph regularized ranking methods and pairwise similarity based ranking methods. Conclusion The problem of graph model and parameter selection in graph regularized protein domain ranking can be solved effectively by combining multiple graphs. This aspect of generalization introduces a new frontier in applying multiple graphs to solving protein domain ranking applications.

State of weed infestation and features of sugar beet protection in Belarus

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Soroka Sergey Vladimirovich

2006-01-01

Full Text Available The changes of phytosanitary situation recently taking place in sugar beet crops in the Republic of Belarus are shown. It is noticed that in the crop agrocoenosises there is a high infestation level caused by Japanese barnyard millet (Echinochloa crus-galli (L Pal. Beauv, field sowthistle (Sonchus arvensis L, chickweed (Stellaria media (L Vill, quick grass (Agropyron repens (L Pal Beauv, matricary (Matricaria perforate Merat, creeping thistle (Circium arvense (L scop, marsh woundwort (Stachus palustris L wild buckwheat (Polygonum convolvulus L, bristle stem hemp nettle (Galeopsis tetrahit L, common horsetail (Equisetum arvense L, field forget-me-not (Myosotis arvensis (L Hill, shepherd's purse (Capsella bursa-pastoris (L Med etc. Due to non-observance of preventive and separate agrotechnical techniques especially in spring-summer period, such weeds as bedstraw (Galium aparine L, white campion (Melandrium album (Mill Garcke, green amaranthus (Amaranthus retroflexus L started to appear in the crops. To protect sugar beet effectively, two variants of herbicides application are proposed. The first one - a combined, one stipulating soil action herbicides application before planting or before sugar beet seedlings emergence and on seedlings - to carry out two treatment by post-emergence preparations. The second variant, a split post- -emergence herbicide application (two-three times spraying on growing weeds at small application rates. In the next 5-6 years, a combined method will be of a primary importance in the conditions of the Republic.

Working in Cooperatives and Social Economy: Effects on Job Satisfaction and the Meaning of Work Travailler en coopérative et dans l’économie sociale, effets sur la satisfaction et le sens du travail Trabajar en cooperativa y en la economía social, efectos sobre la satisfacción y el sentido del trabajo

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Davy Castel

2011-11-01

Full Text Available This study investigates the impact of social economics on job satisfaction. According to the hypothesis, the adoption of social economics’ goals and modes of work organization is a source of job satisfaction: reduction in the separation between conception and execution, increase in work’s interest and perceived usefulness, and better cohesion and coordination among workers. Semi-structured interviews were conducted with the workers in two consulting firms in sustainable development in France, one a cooperative and the other a private company. The results of the content analysis corroborate the hypothesis. The fact that social economy’s principles have positive impacts on job satisfaction in both companies also shows that social economy’s positive influence on well-being at work depends less on formal work organization than on the meaning given to work.Nous étudions les effets de l’économie sociale sur la satisfaction au travail. Selon l’hypothèse, l’adoption des finalités et des modes d’organisation du travail de l’économie sociale est source de satisfaction au travail : réduction de la séparation entre conception et exécution, augmentation de l’intérêt et de l’utilité perçue du travail, meilleure cohésion et coordination entre les travailleurs. Les résultats de l’analyse de contenu des entretiens semi-directifs menés auprès des salariés de deux entreprises exerçant dans le secteur du conseil en développement durable en France, l’une société coopérative (SCOP et l’autre entreprise privée, confirment cette hypothèse. Le fait que les principes d’économie sociale ont des conséquences positives sur la satisfaction au travail dans les deux entreprises montre par ailleurs que l’influence positive de l’économie sociale sur le bien-être au travail dépend moins des modes de structuration formels que du sens donné au travail.Este artículo estudia los efectos de la economía social sobre la

Travailler en coopérative et dans l’économie sociale, effets sur la satisfaction et le sens du travail Working in a cooperative and social economics: Effects on job satisfaction and the meaning of work Trabajar en cooperativa y en la economía social, efectos sobre la satisfacción y el sentido del trabajo

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Annick Durand-Delvigne

2011-11-01

Full Text Available Nous étudions les effets de l’économie sociale sur la satisfaction au travail. Selon l’hypothèse, l’adoption des finalités et des modes d’organisation du travail de l’économie sociale est source de satisfaction au travail : réduction de la séparation entre conception et exécution, augmentation de l’intérêt et de l’utilité perçue du travail, meilleure cohésion et coordination entre les travailleurs. Les résultats de l’analyse de contenu des entretiens semi-directifs menés auprès des salariés de deux entreprises exerçant dans le secteur du conseil en développement durable en France, l’une société coopérative (SCOP et l’autre entreprise privée, confirment cette hypothèse. Le fait que les principes d’économie sociale ont des conséquences positives sur la satisfaction au travail dans les deux entreprises montre par ailleurs que l’influence positive de l’économie sociale sur le bien-être au travail dépend moins des modes de structuration formels que du sens donné au travail.This study investigates the impact of social economics on job satisfaction. According to the hypothesis, the adoption of social economics’ goals and modes of work organization is a source of job satisfaction: reduction in the separation between conception and execution, increase in work’s interest and perceived usefulness, and better cohesion and coordination among workers. Semi-structured interviews were conducted with the workers in two consulting firms in sustainable development in France, one a cooperative and the other a private company. The results of the content analysis corroborate the hypothesis. The fact that social economy’s principles have positive impacts on job satisfaction in both companies also shows that social economy’s positive influence on well-being at work depends less on formal work organization than on the meaning given to work.Este artículo estudia los efectos de la economía social sobre la

Functional annotation by sequence-weighted structure alignments: statistical analysis and case studies from the Protein 3000 structural genomics project in Japan.

Science.gov (United States)

Standley, Daron M; Toh, Hiroyuki; Nakamura, Haruki

2008-09-01

A method to functionally annotate structural genomics targets, based on a novel structural alignment scoring function, is proposed. In the proposed score, position-specific scoring matrices are used to weight structurally aligned residue pairs to highlight evolutionarily conserved motifs. The functional form of the score is first optimized for discriminating domains belonging to the same Pfam family from domains belonging to different families but the same CATH or SCOP superfamily. In the optimization stage, we consider four standard weighting functions as well as our own, the "maximum substitution probability," and combinations of these functions. The optimized score achieves an area of 0.87 under the receiver-operating characteristic curve with respect to identifying Pfam families within a sequence-unique benchmark set of domain pairs. Confidence measures are then derived from the benchmark distribution of true-positive scores. The alignment method is next applied to the task of functionally annotating 230 query proteins released to the public as part of the Protein 3000 structural genomics project in Japan. Of these queries, 78 were found to align to templates with the same Pfam family as the query or had sequence identities > or = 30%. Another 49 queries were found to match more distantly related templates. Within this group, the template predicted by our method to be the closest functional relative was often not the most structurally similar. Several nontrivial cases are discussed in detail. Finally, 103 queries matched templates at the fold level, but not the family or superfamily level, and remain functionally uncharacterized. 2008 Wiley-Liss, Inc.

Phenolic acids as bioindicators of fly ash deposit revegetation

Energy Technology Data Exchange (ETDEWEB)

L. Djurdjevic; M. Mitrovic; P. Pavlovic; G. Gajic; O. Kostic [Institute for Biological Research ' Sinisa Stankovic,' Belgrade (Serbia and Montenegro). Department of Ecology

2006-05-15

The floristic composition, the abundance, and the cover of pioneer plant species of spontaneously formed plant communities and the content of total phenolics and phenolic acids, as humus constituents, of an ash deposit after 7 years of recultivation were studied. The restoration of both the soil and the vegetation on the ash deposits of the 'Nikola Tesla-A' thermoelectric power plant in Obrenovac (Serbia) is an extremely slow process. Unfavorable physical and chemical characteristics, the toxicity of fly ash, and extreme microclimatic conditions prevented the development of compact plant cover. The abundance and cover of plants increased from the central part of the deposit towards its edges. Festuca rubra L., Crepis setosa Hall., Erigeron canadensis L., Cirsium arvense (L.) Scop., Calamagrostis epigeios (L.) Roth., and Tamarix gallica L. were the most abundant species, thus giving the highest cover. Humus generated during the decomposition process of plant remains represents a completely new product absent in the ash as the starting material. The amount of total phenolics and phenolic acids in fly ash increased from the center of the deposit towards its edges in correlation with the increase in plant abundance and cover. The presence of phenolic acids indicates the ongoing process of humus formation in the ash, in which the most abundant pioneer plants of spontaneously formed plant communities play the main role. Phenolic compounds can serve as reliable bioindicators in an assessment of the success of the recultivation process of thermoelectric power plants' ash deposits.

The potential medicinal value of plants from Asteraceae family with antioxidant defense enzymes as biological targets.

Science.gov (United States)

Koc, Suheda; Isgor, Belgin S; Isgor, Yasemin G; Shomali Moghaddam, Naznoosh; Yildirim, Ozlem

2015-05-01

Plants and most of the plant-derived compounds have long been known for their potential pharmaceutical effects. They are well known to play an important role in the treatment of several diseases from diabetes to various types of cancers. Today most of the clinically effective pharmaceuticals are developed from plant-derived ancestors in the history of medicine. The aim of this study was to evaluate the free radical scavenging activity and total phenolic and flavonoid contents of methanol, ethanol, and acetone extracts from flowers and leaves of Onopordum acanthium L., Carduus acanthoides L., Cirsium arvense (L.) Scop., and Centaurea solstitialis L., all from the Asteraceae family, for investigating their potential medicinal values of biological targets that are participating in the antioxidant defense system such as catalase (CAT), glutathione S-transferase (GST), and glutathione peroxidase (GPx). In this study, free radical scavenging activity and total phenolic and flavonoid contents of the plant samples were assayed by DPPH, Folin-Ciocalteu, and aluminum chloride colorimetric methods. Also, the effects of extracts on CAT, GST, and GPx enzyme activities were investigated. The highest phenolic and flavonoid contents were detected in the acetone extract of C. acanthoides flowers, with 90.305 mg GAE/L and 185.43 mg Q/L values, respectively. The highest DPPH radical scavenging was observed with the methanol leaf extracts of C. arvense with an IC50 value of 366 ng/mL. The maximum GPx and GST enzyme inhibition activities were observed with acetone extracts from the flower of C. solstitialis with IC50 values of 79 and 232 ng/mL, respectively.

0.1–2000 eV electron impact cross sections for dichlorine monoxide

Energy Technology Data Exchange (ETDEWEB)

Goswami, Biplab; Gupta, Dhanoj; Antony, Bobby, E-mail: bka.ism@gmail.com

2014-03-01

Highlights: • Quantum mechanical models were used to find TCS for e-Cl{sub 2}O from 0.1 to 2000 eV. • R-matrix method at low energies (<13 eV) and SCOP at high energies (13–2000 eV). • Besides TCS, DCS, excitation cross section and momentum transfer CS also predicted. • R-matrix method identifies resonances with a possibility of DEA formation. • Resonance detected at 1.88 eV is associated with Cl{sub 2}O{sup −} anion formation. - Abstract: Scattering dynamics of dichlorine monoxide (Cl{sub 2}O) molecule by electron impact is investigated as a function of electron energy and scattering angle. Electron impact total cross sections for Cl{sub 2}O over an extensive range of impact energies from 0.1 to 2000 eV are reported in this article. Below the ionization threshold of the target, the ab initio R-matrix method and above this incident energy spherical complex optical potential formalism are used for cross section calculation. The total cross section obtained from both theories merges smoothly at the overlapping energy. The resonances obtained using DZP basis sets are located at 1.883, 3.592, 5.205 and 7.326, 8.206, 8.301, 8.452, 9.369 eV and that with 6-31G* basis sets are identified at 1.944, 3.566, 5.183, 5.261, 5.658, 8.738 and 9.187 eV with the possibility of negative ions formation. This is the first attempt to calculate the differential, and momentum transfer cross sections for Cl{sub 2}O molecule.

Cotinus coggyria: a rich source of antioxidants.

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Riaz, Tauheeda; Abbasi, Muhammad Athar; Aziz-ur-Rehman; Rubab, Kaniz; Shahzadi, Tayyaba; Ajaib, Muhammad; Khan, Khalid Mohammed

2012-07-01

Methanolic extract of Cotinus coggyria Scop. was mixed in distilled water and partitioned first with the n-hexane, then with chloroform, then ethyl acetate and at the end with n-butanol. The phytochemical screening of plant showed presence of the phenolics, cardiac glycosides and flavonoides in large amount in the chloroform, n-butanol and ethyl acetate soluble fraction. Antioxidant activity of these four fractions and the left behind aqueous fraction was measured by four methods such as: 1,1-diphenyl-2-picrylhydrazyl (DPPH) free radical scavenging activity, ferric thiocyanate assay, ferric reducing antioxidant power (FRAP) assay and total antioxidant activity. Total phenolics were also measured. Noteworthy antioxidant potential was shown by the chloroform, n-butanol and ethyl acetate soluble fraction showed. Ethyl acetate fraction showed highest % inhibition of the DPPH radical when compared with the other studied fractions i.e. 81.64 ± 1.29% inhibition of the DPPH radical at the concentration of 30 μg/ml. Its IC(50) value was found to be 15.58 ± 0.09 μg/ml, comparative to the butylated hydroxytoluene (BHT), which has IC(50) value 12.6 ± 0.85μg/ml. This fraction also showed the highest lipid peroxidation inhibition (61.41 ± 1.16%), as well as highest values of FRAP (697.76 ± 1.98 μg of trolox equivalents) total antioxidant activity (1.02 ± 0.09) and total phenolic contents (229.34 ± 0.57) comparative to the other studied fractions. The chloroform and n-butanol soluble fraction also showed good results for all the studied antioxidant assays.

Pentatomídeos (Hemiptera associados a espécies nativas em Itaara, RS, Brasil

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Juliana Garlet

2010-04-01

Full Text Available http://dx.doi.org/10.5007/2175-7925.2010v23n1p91 Com o objetivo de determinar qualitativamente e quantitativamente os pentatomídeos associados a diferentes espécies botânicas nativas, no período de setembro de 2005 a setembro de 2006, foram coletados insetos em nove espécies: Gochnatia polymorpha (Less. (cambará, Eugenia uniflora Berg. (pitangueira, Acca selowiana (Berg Burret (goiaba-da-serra, Psidium cattleianum Sabine (araçá, Baccharis spp., Solanaum mauritianum Scop. (fumo-bravo, Micanea cinerascens Miq. (passiquinho, Calliandra brevipes Bhent. (caliandra, Schinus molle L. (aroeira, localizadas na barragem Rodolfo da Costa e Silva, município de Itaara, RS. Foram realizadas coletas quinzenais, com o auxílio de um funil cônico confeccionado com folha de flandres (2mm, com 70cm de diâmetro na maior abertura e 63cm de altura. Retirou-se uma amostra por espécie botânica por data de coleta, obtida através de dez sacudidas dos ramos sobre o funil. Realizadas as coletas, o material foi levado ao Laboratório de Entomologia do Departamento de Defesa Fitossanitária da Universidade Federal de Santa Maria, onde foi realizada a triagem e identificação do material. Foram identificadas nove espécies de Pentatomidae. Edessa rufomarginata (De Geer, 1773 foi à espécie com maior ocorrência, seguida de Thyanta humilis Bergroth, 1891. A espécie botânica S. mauritianum foi a que apresentou o maior número de espécies de Pentatomidae coletados, representando 26,9% do total.

Adopting a Sustainable Community of Practice Model when Developing a Service to Support Patients with Epidermolysis Bullosa (EB): A Stakeholder-Centered Approach.

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Gowran, Rosemary Joan; Kennan, Avril; Marshall, Siobhán; Mulcahy, Irene; Ní Mhaille, Sile; Beasley, Sarah; Devlin, Mark

2015-02-01

Epidermolysis bullosa (EB) is a rare, genetic skin condition that is complicated, distressing, and painful and permeates every aspect of patients' lives. Support services are essential for meeting the primary needs of patients and families living with EB; however, provision is challenged by many complex issues. In collaboration with the patient organization DEBRA Ireland, this research conducted an in-depth analysis of Irish healthcare support services for EB, with a view to moving towards an improved and sustainable care pathway. A sustainable community of practice model (SCOP), as a core construct provided a simplified framework when studying this complex system. The research utilized mixed methods, comprising individual interviews, questionnaires, and a participatory action research workshop based on a soft systems approach. The study engaged patients, family members, service providers, and policy developers. Findings emphasized that the complexities of life with EB are more than 'skin deep'. The lived experience of stakeholders revealed many levels of emotion, both positive and heart-rending. Despite the positive efforts of specialists in this field, inadequacies to meet the primary needs of people with EB, such as bandages-fundamental for survival-were highlighted. Participants reported challenges relating to understanding patients' needs, access to consistent services within hospitals and the community, time constraints, and the strong emotions evoked by this severe and rare disease. The study identified several areas that can be targeted to bring about improvements in meeting primary needs. Education and research at public, policy, and practice levels need to be prioritized. It is imperative that citizens move beyond an awareness that EB exists and demonstrate a consciousness about the importance of advocating and enabling seamless and sustainable support services through collective action.

Phenological observations on shrubs to predict weed emergence in turf

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Masin, Roberta; Zuin, Maria Clara; Zanin, Giuseppe

2005-09-01

Phenology is the study of periodic biological events. If we can find easily recognizable events in common plants that precede or coincide with weed emergences, these plants could be used as indicators. Weed seedlings are usually difficult to detect in turf, so the use of phenological indicators may provide an alternative approach to predict the time when a weed appears and consequently guide management decisions. A study was undertaken to determine whether the phenological phases of some plants could serve as reliable indicators of time of weed emergence in turf. The phenology of six shrubs (Crataegus monogyna Jacq., Forsythia viridissima Lindl., Sambucus nigra L., Syringa vulgaris L., Rosa multiflora Thunb., Ziziphus jujuba Miller) and a perennial herbaceous plant [Cynodon dactylon (L.) Pers.] was observed and the emergence dynamics of four annual weed species [Digitaria sanguinalis (L.) Scop., Eleusine indica (L.) Gaertner, Setaria glauca (L.) Beauv., Setaria viridis (L.) Beauv.] were studied from 1999 to 2004 in northern Italy. A correlation between certain events and weed emergence was verified. S. vulgaris and F. viridissima appear to be the best indicators: there is a quite close correspondence between the appearance of D. sanguinalis and lilac flowering and between the beginning of emergence of E. indica and the end of lilac flowering; emergences of S. glauca and S. viridis were predicted well in relation to the end of forsythia flowering. Base temperatures and starting dates required to calculate the heat unit sums to reach and complete the flowering phase of the indicators were calculated using two different methods and the resultant cumulative growing degree days were compared.

Improved protein surface comparison and application to low-resolution protein structure data

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Kihara Daisuke

2010-12-01

Full Text Available Abstract Background Recent advancements of experimental techniques for determining protein tertiary structures raise significant challenges for protein bioinformatics. With the number of known structures of unknown function expanding at a rapid pace, an urgent task is to provide reliable clues to their biological function on a large scale. Conventional approaches for structure comparison are not suitable for a real-time database search due to their slow speed. Moreover, a new challenge has arisen from recent techniques such as electron microscopy (EM, which provide low-resolution structure data. Previously, we have introduced a method for protein surface shape representation using the 3D Zernike descriptors (3DZDs. The 3DZD enables fast structure database searches, taking advantage of its rotation invariance and compact representation. The search results of protein surface represented with the 3DZD has showngood agreement with the existing structure classifications, but some discrepancies were also observed. Results The three new surface representations of backbone atoms, originally devised all-atom-surface representation, and the combination of all-atom surface with the backbone representation are examined. All representations are encoded with the 3DZD. Also, we have investigated the applicability of the 3DZD for searching protein EM density maps of varying resolutions. The surface representations are evaluated on structure retrieval using two existing classifications, SCOP and the CE-based classification. Conclusions Overall, the 3DZDs representing backbone atoms show better retrieval performance than the original all-atom surface representation. The performance further improved when the two representations are combined. Moreover, we observed that the 3DZD is also powerful in comparing low-resolution structures obtained by electron microscopy.

Improved protein surface comparison and application to low-resolution protein structure data.

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Sael, Lee; Kihara, Daisuke

2010-12-14

Recent advancements of experimental techniques for determining protein tertiary structures raise significant challenges for protein bioinformatics. With the number of known structures of unknown function expanding at a rapid pace, an urgent task is to provide reliable clues to their biological function on a large scale. Conventional approaches for structure comparison are not suitable for a real-time database search due to their slow speed. Moreover, a new challenge has arisen from recent techniques such as electron microscopy (EM), which provide low-resolution structure data. Previously, we have introduced a method for protein surface shape representation using the 3D Zernike descriptors (3DZDs). The 3DZD enables fast structure database searches, taking advantage of its rotation invariance and compact representation. The search results of protein surface represented with the 3DZD has showngood agreement with the existing structure classifications, but some discrepancies were also observed. The three new surface representations of backbone atoms, originally devised all-atom-surface representation, and the combination of all-atom surface with the backbone representation are examined. All representations are encoded with the 3DZD. Also, we have investigated the applicability of the 3DZD for searching protein EM density maps of varying resolutions. The surface representations are evaluated on structure retrieval using two existing classifications, SCOP and the CE-based classification. Overall, the 3DZDs representing backbone atoms show better retrieval performance than the original all-atom surface representation. The performance further improved when the two representations are combined. Moreover, we observed that the 3DZD is also powerful in comparing low-resolution structures obtained by electron microscopy.

Efeitos de misturas de dinitramine e diuron em pré-plantio incorporado na cultura do algodão (Gossypium hirsutum L. Effects of dinitramine and diuron mixtures applied pre-planting incorporated on cotton (Gossypium hirsutum L.

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R. Victoria Filho

1982-06-01

Full Text Available Com o objetivo de se verificar o comportamento de misturas de dinitramine e diuron no controle de plantas daninhas na cultura do algodão, foram conduzidos dois experimentos de campo nos municípios paulistas de Casa Branca e Jaboticabal, em solo argiloso (3,6% m.o. e barrento (2,3% m.o., respectivamente. A variedade de algodão semeada foi a IAC -13-1 em Casa Branca (05-11-75 e a RM-4A em Jaboticabal (03-12-75. O delineamento experimental adotado foi o de blocos ao acaso com os tratamentos de dinitramine a 0,25 kg; 0,40 kg; 0,50 kg/ha; de diuron a 1,20 kg; 1,50 kg; 1,80 kg/ha, e das misturas de dinitramine e diuron nas combinações possíveis com essas doses além do tratamento de trifluralin a 1,00 kg/ha ou mistura com diuron a 1,20 kg/ha. Constou do experimento também um tratamento sem aplicação de herbicida, mantido no limpo por meios mecânicos. Quando foi considerado o controle geral das plantas daninhas, no ensaio de Casa Branca, os melhores resultados foramobtidos pelas misturas em comparação com as aplicações isoladas de dinitramine e de diuron sobre capim-colchão (Digitaria sanguinalis (L. Scop., capimpé-de-galinha (Eleusine indica (L. Gaertn., carrapicho-rasteiro (Acanthospermum australe (Loef O. Kúntze, poaia (Borreria alata (Aubl. D.C., poaia -branca (Richardia brasiliensis Gomez e guanxuma (Sida spp. Porém, no experimento de Jaboticabal, onde as plantas daninhas mais frequentes foram capim-colchão, capim-carrapicho (Cenchrus echinatus L., capim-oferecido (Pennisetum setosum L. Rich. Pers. carrapicho-rasteiro, poaia e guanxuma, os melhores índices de controle foram obtidos com trifluralin + diuron e com dinitramine a 0,25 kg; 0,40 kg; 0,50 kg/ha em mistura com diuron a 1,80 kg/ha. Não foram observados sintomas fitotóxicos à cultura na fase inicial de desenvolvimento; e, não houve diferença significativa na produção de algodão em caroço obtida.A field research was conducted to evaluate the effects of

ASIGURAREA PROCESULUI EDUCAȚIONAL ORIENTAT SPRE ÎNVĂȚARE ACTIVĂ LA UNIVERSITATEA GLOUCESTERSHIRE DIN MAREA BRITANIE

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Mihaela VIDAICU

2018-03-01

Full Text Available Acest studiu a fost elaborat în rezultatul vizitei de studiu la Universitatea Gloucestershiredin Marea Britanie (28 februarie – 5 martie 2016 realizată în cadrul Proiectului „Introducerea metodelor de învățare bazată pe probleme în Moldova: Sporirea competitivității şi angajabilităţii studenților”, finanțat de Programul European Erasmus +. Prezen­tările și orele de curs la care am asistatla Facultatea de Business, Facultatea de Drept şila Facultatea de Tehnologii Informaționale au avut drept scop familiarizarea delegației din Republica Moldova cu procesul de studii de la această universitate, precum și prezentarea unor metode interactive de predare orientate spre o învățare activă și o implicare mai intensă a studenților în procesul de predare-învățare. Acest studiu cuprinde analiza proceselor educaționale la nivel de sistem educațional, management universitar și management al facultăților.ENSURING AN EDUCATIONAL PROCESS FOCUSED ON ACTIVE LEARNING ATGLOUCESTERSHIREUNIVERSITYFROMUKThis study was conducted as follow up to the study visit at GloucestershireUniversityfrom United Kingdom(Feb­ruary 28 – March 5, 2016 within the Project „Introducing Problem Based Learning in Moldova: Toward Enhancing Students’ Competitiveness and Employability", funded by the European Erasmus+ Program. Presentations and classes attended at the Faculty of Business, Faculty of Law and IT Faculty aimed at familiarizing Moldovan delegation with the educational process at this university and with the interactive teaching methods focused on active learning and with significant involvement of students in teaching-learning process. This study refers to the processes on education system level, university and faculty management levels.

REINTERPRETATION OF THE LATE PLEISTOCENE INGARANO CAVE DEPOSIT BASED ON THE FOSSIL BIRD ASSOCIATION (APULIA, SOUTH-EASTERN ITALY

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CLAUDIA BEDETTI

2007-11-01

Full Text Available We present a study of Late Pleistocene fossil bird remains from Ingarano (Apulia, SE Italy, based on the revision of previously published material and the study of unpublished fossils bones. New field observations make it possible to simplify the stratigraphy of the deposit compared to previous work. The systematic study of the fossil bird bones revealed the presence of 15 taxa, including two hypothetical ones: Circus aeruginosus, Buteo rufinus, Aquila chrysaëtos, Falco columbarius, Falco cherrug, Alectoris graeca, Perdix perdix, Columba livia, Otus scops, Nyctea scandiaca, Nyctea scandiaca vel Bubo bubo, Athene noctua, Pyrrhocorax graculus, Pyrrhocorax pyrrhocorax, Corvus corone, Corvus corone vel Corvus frugilegus, Corvus corax. Our detailed study also helps improve the taphonomical interpretation of the deposit: the remains from the lower layers were accumulated after mammalian predator activity and were transported over short distances, while the ones from the upper layers show sings of intense transport, such as fractures and surface abrasion. Two different bird assemblages were recognized, respectively from the lowermost and the upper layers of the clastic succession exposed in the Ingarano deposit; this difference is also confirmed by the fossil mammal remains. The systematic study makes it possible to make palaeoenvironmental and palaeoclimatic reconstructions: both assemblages indicate open environments, and the taxa of the lower layers indicate the presence of woods and wetlands with colder characteristics, while birds of the upper layers indicate drier and warmer conditions. This analysis, and the dating established through geochemical analyses and study of lithic artefacts, lead us to date the formation of the Ingarano deposit to the Late Pleistocene, in particular to the MIS 3. The presence of a layer dated to the MIS 2 at the base of the succession indicated in previous works cannot be confirmed. 

Natural history and immature stage morphology of Spialia Swinhoe, 1912 in the Iberian Peninsula (Lepidoptera, Hesperiidae

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Juan L. Hernández-Roldán

2018-01-01

Full Text Available We present new data on the ecology, natural history and geographic distribution of the recently described skipper Spialia rosae Hernández-Roldán, Dapporto, Dincă, Vicente & Vila, 2016 and compare its immature stage morphology with the sympatric species S. sertorius (Hoffmannsegg, 1804. Spialia rosae uses species of Rosa L. (Rosaceae as larval host-plants and prefers montane habitats, while S. sertorius feeds on Sanguisorba minor Scop. (Rosaceae and inhabits lower altitudes. Rosa corymbifera Borkh. and R. tomentosa Sm. are documented for the first time as foodplants of S. rosae. We report Microgaster australis Thomson, 1895 (Hymenoptera, Braconidae, Microgastrinae as a larval parasitoid of S. rosae. Details of the immature stages of S. rosae and S. sertorius are shown using scanning electron microscope photographs, confirming the similar immature stage morphology, at least as regards the Iberian S. sertorius. In both species, the egg has high radial ribs, the last instar larva has branched setae covering the head, and the pupa has setae with pointed tips, barrel-like cuticular formations, and hairy mesothoracic tubercles. By extensive sampling of the species of Spialia in the region of Segovia, Central Spain, we extend the previously known geographic distribution of S. rosae to 56 new 100 km2 MGRS squares, which represents a 155 % increase. Spialia rosae is present in the northern part of the interior plateau and in the main mountain systems of the Iberian Peninsula. The main threats to the populations of S. rosae are its limited distribution range and the possible effects of climate change due to its specialization in montane habitats. The conservation status of S. rosae was previously regarded as Data Deficient (DD. With the addition of new data the species can now be evaluated as Least Concern (LC.

A randomised double-blind placebo-controlled pilot trial of a combined extract of sage, rosemary and melissa, traditional herbal medicines, on the enhancement of memory in normal healthy subjects, including influence of age.

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Perry, N S L; Menzies, R; Hodgson, F; Wedgewood, P; Howes, M-J R; Brooker, H J; Wesnes, K A; Perry, E K

2018-01-15

To evaluate for the first time the effects of a combination of sage, rosemary and melissa (Salvia officinalis L., Rosmarinus officinalis L. and Melissa officinalis L.; SRM), traditional European medicines, on verbal recall in normal healthy subjects. To devise a suitable study design for assessing the clinical efficacy of traditional herbal medicines for memory and brain function. Forty-four normal healthy subjects (mean age 61 ± 9.26y SD; m/f 6/38) participated in this study. A double-blind, randomised, placebo-controlled pilot study was performed with subjects randomised into an active and placebo group. The study consisted of a single 2-week term ethanol extract of SRM that was chemically-characterised using high resolution LC-UV-MS/MS analysis. Immediate and delayed word recall were used to assess memory after taking SRM or placebo (ethanol extract of Myrrhis odorata (L.) Scop.). In addition analysis was performed with subjects divided into younger and older subgroups (≤ 62 years mean age n = 26: SRM n = 10, Placebo n = 16; ≥ 63 years n = 19: SRM n = 13, Placebo n = 6). Overall there were no significant differences between treatment and placebo change from baseline for immediate or delayed word recall. However subgroup analysis showed significant improvements to delayed word recall in the under 63 year age group (p memory in healthy subjects under 63 years of age. Short- and long- term supplementation with SRM extract merits more robust investigation as an adjunctive treatment for patients with Alzheimer's disease and in the general ageing population. The study design proved a simple cost effective trial protocol to test the efficacy of herbal medicines on verbal episodic memory, with future studies including broader cognitive assessment. Copyright © 2017 Elsevier GmbH. All rights reserved.

Selection and characterization of glyphosate tolerance in birdsfoot trefoil (Lotus corniculatus)

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Boerboom, C.M.

1989-01-01

If birdsfoot trefoil (Lotus corniculatus L.) was tolerant to glyphosate [N-(phosphonomethyl)glycine], Canada thistle [Cirsium arvense (L.) Scop.] and other dicot weeds could be selectively controlled in certified seed production fields. Glyphosate tolerance in birdsfoot trefoil was identified in plants from the cultivar Leo, plants regenerated from tolerant callus, and selfed progeny of plants regenerated from callus. Plants from the three sources were evaluated in field studies for tolerance to glyphosate at rates up to 1.6 kg ae/ha. Plants of Leo selected for tolerance exhibited a twofold range in the rate required to reduce shoot weight 50% (I 50 s from 0.6 to 1.2 kg/ha glyphosate). Plants regenerated from tolerant callus had tolerance up to 66% greater than plants regenerated from unselected callus. Transgressive segregation for glyphosate tolerance was observed in the selfed progeny of two regenerated plants that both had I 50 s of 0.7 kg/ha glyphosate. The selfed progeny ranged from highly tolerant (I 50 of 1.5 kg/ha) to susceptible (I 50 of 0.5 kg/ha). Spray retention, 14 C-glyphosate absorption and translocation did not account for the differential tolerance of nine plants that were evaluated from the three sources. The specific activity of 5-enolpyruvylshikimate 3-phosphate (EPSP) synthase ranged from 1.3 to 3.5 nmol/min sm-bullet mg among the nine plants and was positively correlated with glyphosate tolerance. Leo birdsfoot trefoil was found to have significant variation in glyphosate tolerance which made it possible to initiate a recurrent selection program to select for glyphosate tolerance in birdsfoot trefoil. Two cycles of selection for glyphosate tolerance were practiced in three birdsfoot trefoil populations, Leo, Norcen, and MU-81

Perceived health properties of wild and cultivated food plants in local and popular traditions of Italy: A review.

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Guarrera, P M; Savo, V

2013-04-19

Many wild and cultivated plants are rich in mineral elements and bioactive compounds and are consumed for health purposes. Studies have demonstrated the curative properties of many of these food plants. In this paper, we discuss the properties of several plants with potential health benefits that have previously received little attention. This review provides an overview and critical discussion of food plants perceived by informants (emic view) as healthy or used as 'food medicine' in Italy. Pharmacological activity of these plants is explored, based upon published scientific research (etic view). Preparation methods, taste perception, toxicity and various potentialities of some food plants are also discussed. The present review includes literature available from 1877 to 2012. The information was collected from books, scientific papers, and abstracts that reported any plants used as food medicine in Italy. The perceived health properties were analyzed in the framework of recent international phytochemical and phytopharmacological literature. A total of 67 edible wild plants and 18 cultivated vegetables, distributed into 20 families, were reported by informants (in literature). Several plants were highly cited (e.g., Taraxacum officinale Webb., Crepis vesicaria L., Allium cepa L., Allium sativum L.). The most frequent health properties attributed to edible plants by the informants were: laxative (22 species), diuretic (15), digestive (11), galactagogue (8), antitussive (cough) (8), hypotensive (7), tonic (7), sedative (7), hypoglycemic (6). Some edible plants are promising for their potential health properties, such as Crepis vesicaria L., Sanguisorba minor Scop. and Sonchus oleraceus L. Several wild species were perceived by informants to maintain health but have never been studied from a phytochemical or pharmacological point of view: e.g., Asparagus albus L., Crepis leontodontoides All., Hyoseris radiata L. subsp. radiata, Phyteuma spicatum L. Copyright © 2013

Competição entre quatro herbicidas indicados para o controle de plantas daninhas em cana-de-açucar (Saccharum sp Competition on four herbicides for controling weeds in sugarcane (Saccharum sp

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L.S.P. Cruz

1978-09-01

Full Text Available Com a finalidade de estudar a ação dos herbicidas oxadiazon, napropamide, methazole e A-3587 na cultura de cana -de-açúcar (Saccharum sp, foram conduzidos em 1971/72 dois ensaios de campo nos municípios paulistas de Capivari e Leme. Os herbicidas acima citados foram comparados, em trés doses, com 2,4-D anina e atrazine, aplicados em pré -emergência. Oxadiazon a 2,0 kg/ha e A-3587 a 3,0 kg e 4,0 kg/ha foram eficientes no controle das principais plantas daninhas que apareceram nos experimentos: capim-marmelada, Brachiaria plantaginea (Link Hitch; capim-de-colchão, Digitaria sanguinalis (L. Scop; capim-pé-degalinha, Eleusine indica (L. Gaertn.; beldroega, Portulacca oleracea L e guanxumas, Sida spp. Napropamide a 3,0 kg/ha e methazole a 3,5 kg e 4,0 kg/ha só não con trolaram as guanxumas. Nas doses empregadas, nenhum dos herbicidas mostrou-se prejudicial às plantas e à produção de cana-de-açúcar.This paper reports on two field trials carried out during 1971/72, in Capivari and Leme, with the herbicides oxadiazon, napropamide, methazole and A-3587, in sugar-cane crops. In these experiments the four herbicides, in three doses, were compared, in preemergence, with 2,4-D amine and atrazine. Oxadiazon at 2.0 kg/ha and A-3587 at 3.0 kg and 4,0 kg/ha gave good control against Brachiaria plantaginea, Digitaria sanguinalis, Eleusine indica, Portulacca oleracea and Sida spp, wich were found in the trials. Napropamide at 3.0 kg/ha and methazole at 3.5 kg and 4.0 kg/ha gave good control against those weeds but except Sida spp. None of the herbicides caused injuries to the crop or reduced yield.

Phenolic acids as bioindicators of fly ash deposit revegetation.

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Djurdjević, L; Mitrović, M; Pavlović, P; Gajić, G; Kostić, O

2006-05-01

The floristic composition, the abundance, and the cover of pioneer plant species of spontaneously formed plant communities and the content of total phenolics and phenolic acids, as humus constituents, of an ash deposit after 7 years of recultivation were studied. The restoration of both the soil and the vegetation on the ash deposits of the "Nikola Tesla-A" thermoelectric power plant in Obrenovac (Serbia) is an extremely slow process. Unfavorable physical and chemical characteristics, the toxicity of fly ash, and extreme microclimatic conditions prevented the development of compact plant cover. The abundance and cover of plants increased from the central part of the deposit towards its edges (ranging from 1-80%). Festuca rubra L., Crepis setosa Hall., Erigeron canadensis L., Cirsium arvense (L.) Scop., Calamagrostis epigeios (L.) Roth., and Tamarix gallica L. were the most abundant species, thus giving the highest cover. Humus generated during the decomposition process of plant remains represents a completely new product absent in the ash as the starting material. The amount of total phenolics and phenolic acids (38.07-185.16 microg/g of total phenolics and 4.12-27.28 microg/g of phenolic acids) in fly ash increased from the center of the deposit towards its edges in correlation with the increase in plant abundance and cover. Ash samples contained high amounts of ferulic, vanillic, and p-coumaric acid, while the content of both p-hydroxybenzoic and syringic acid was relatively low. The presence of phenolic acids indicates the ongoing process of humus formation in the ash, in which the most abundant pioneer plants of spontaneously formed plant communities play the main role. Phenolic compounds can serve as reliable bioindicators in an assessment of the success of the recultivation process of thermoelectric power plants' ash deposits.

PSPP: a protein structure prediction pipeline for computing clusters.

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Michael S Lee

2009-07-01

Full Text Available Protein structures are critical for understanding the mechanisms of biological systems and, subsequently, for drug and vaccine design. Unfortunately, protein sequence data exceed structural data by a factor of more than 200 to 1. This gap can be partially filled by using computational protein structure prediction. While structure prediction Web servers are a notable option, they often restrict the number of sequence queries and/or provide a limited set of prediction methodologies. Therefore, we present a standalone protein structure prediction software package suitable for high-throughput structural genomic applications that performs all three classes of prediction methodologies: comparative modeling, fold recognition, and ab initio. This software can be deployed on a user's own high-performance computing cluster.The pipeline consists of a Perl core that integrates more than 20 individual software packages and databases, most of which are freely available from other research laboratories. The query protein sequences are first divided into domains either by domain boundary recognition or Bayesian statistics. The structures of the individual domains are then predicted using template-based modeling or ab initio modeling. The predicted models are scored with a statistical potential and an all-atom force field. The top-scoring ab initio models are annotated by structural comparison against the Structural Classification of Proteins (SCOP fold database. Furthermore, secondary structure, solvent accessibility, transmembrane helices, and structural disorder are predicted. The results are generated in text, tab-delimited, and hypertext markup language (HTML formats. So far, the pipeline has been used to study viral and bacterial proteomes.The standalone pipeline that we introduce here, unlike protein structure prediction Web servers, allows users to devote their own computing assets to process a potentially unlimited number of queries as well as perform

Protein fold recognition using geometric kernel data fusion.

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Zakeri, Pooya; Jeuris, Ben; Vandebril, Raf; Moreau, Yves

2014-07-01

Various approaches based on features extracted from protein sequences and often machine learning methods have been used in the prediction of protein folds. Finding an efficient technique for integrating these different protein features has received increasing attention. In particular, kernel methods are an interesting class of techniques for integrating heterogeneous data. Various methods have been proposed to fuse multiple kernels. Most techniques for multiple kernel learning focus on learning a convex linear combination of base kernels. In addition to the limitation of linear combinations, working with such approaches could cause a loss of potentially useful information. We design several techniques to combine kernel matrices by taking more involved, geometry inspired means of these matrices instead of convex linear combinations. We consider various sequence-based protein features including information extracted directly from position-specific scoring matrices and local sequence alignment. We evaluate our methods for classification on the SCOP PDB-40D benchmark dataset for protein fold recognition. The best overall accuracy on the protein fold recognition test set obtained by our methods is ∼ 86.7%. This is an improvement over the results of the best existing approach. Moreover, our computational model has been developed by incorporating the functional domain composition of proteins through a hybridization model. It is observed that by using our proposed hybridization model, the protein fold recognition accuracy is further improved to 89.30%. Furthermore, we investigate the performance of our approach on the protein remote homology detection problem by fusing multiple string kernels. The MATLAB code used for our proposed geometric kernel fusion frameworks are publicly available at http://people.cs.kuleuven.be/∼raf.vandebril/homepage/software/geomean.php?menu=5/. © The Author 2014. Published by Oxford University Press.

Polyphenolic Profile and Targeted Bioactivity of Methanolic Extracts from Mediterranean Ethnomedicinal Plants on Human Cancer Cell Lines

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Antonino Pollio

2016-03-01

Full Text Available The methanol extracts of the aerial part of four ethnomedicinal plants of Mediterranean region, two non-seed vascular plants, Equisetum hyemale L. and Phyllitis scolopendrium (L. Newman, and two Spermatophyta, Juniperus communis L. (J. communis and Cotinus coggygria Scop. (C. coggygria, were screened against four human cells lines (A549, MCF7, TK6 and U937. Only the extracts of J. communis and C. coggygria showed marked cytotoxic effects, affecting both cell morphology and growth. A dose-dependent effect of these two extracts was also observed on the cell cycle distribution. Incubation of all the cell lines in a medium containing J. communis extract determined a remarkable accumulation of cells in the G2/M phase, whereas the C. coggygria extract induced a significant increase in the percentage of G1 cells. The novelty of our findings stands on the observation that the two extracts, consistently, elicited coherent effects on the cell cycle in four cell lines, independently from their phenotype, as two of them have epithelial origin and grow adherent and two are lymphoblastoid and grow in suspension. Even the expression profiles of several proteins regulating cell cycle progression and cell death were affected by both extracts. LC-MS investigation of methanol extract of C. coggygria led to the identification of twelve flavonoids (compounds 1–11, 19 and eight polyphenols derivatives (12–18, 20, while in J. communis extract, eight flavonoids (21–28, a α-ionone glycoside (29 and a lignin (30 were found. Although many of these compounds have interesting individual biological activities, their natural blends seem to exert specific effects on the proliferation of cell lines either growing adherent or in suspension, suggesting potential use in fighting cancer.

A hybrid clustering approach to recognition of protein families in 114 microbial genomes

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Gogarten J Peter

2004-04-01

Full Text Available Abstract Background Grouping proteins into sequence-based clusters is a fundamental step in many bioinformatic analyses (e.g., homology-based prediction of structure or function. Standard clustering methods such as single-linkage clustering capture a history of cluster topologies as a function of threshold, but in practice their usefulness is limited because unrelated sequences join clusters before biologically meaningful families are fully constituted, e.g. as the result of matches to so-called promiscuous domains. Use of the Markov Cluster algorithm avoids this non-specificity, but does not preserve topological or threshold information about protein families. Results We describe a hybrid approach to sequence-based clustering of proteins that combines the advantages of standard and Markov clustering. We have implemented this hybrid approach over a relational database environment, and describe its application to clustering a large subset of PDB, and to 328577 proteins from 114 fully sequenced microbial genomes. To demonstrate utility with difficult problems, we show that hybrid clustering allows us to constitute the paralogous family of ATP synthase F1 rotary motor subunits into a single, biologically interpretable hierarchical grouping that was not accessible using either single-linkage or Markov clustering alone. We describe validation of this method by hybrid clustering of PDB and mapping SCOP families and domains onto the resulting clusters. Conclusion Hybrid (Markov followed by single-linkage clustering combines the advantages of the Markov Cluster algorithm (avoidance of non-specific clusters resulting from matches to promiscuous domains and single-linkage clustering (preservation of topological information as a function of threshold. Within the individual Markov clusters, single-linkage clustering is a more-precise instrument, discerning sub-clusters of biological relevance. Our hybrid approach thus provides a computationally efficient

THE FAUNA OF PEST CHRYSOMELINAE (СOLEOPTERA: СHRYSOMELIDAE OF NORTH-EASTERN PART OF AZERBAIJAN

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N. B. Mirzoeva

2014-01-01

Full Text Available Abstract. An annotated list of beetles of the subfamily Chrysomelinae of Kuba-Khachmaz Region of Azerbaijan is providedfor the first time. In total 18 species were found, 5 of which are new records to Azerbaijan and 4 to Kuba-Khachmaz Region. Also, among these beetles such a serious pests were recorded as Leptinotarsa decemlineata Say, Chrysolina menthastri Suffr., Chrysomela populi L., Chrysomela vigintipunctata Scop., Qastrophysa polygoni L., Phaedon cochleariae F. which are harmful to both forest and agricultural ecosystems.Methods. Collection of eggs, larvae, pupae and adults was carried out by examination of wild and cultivated plants, soil excavation as well as mowing a net for wild plants and trees.To determine leaf beetles used classification and nomenclature of prof. L.N. Medvedeva and prof. D.S. Shapiro.Results. As a result of research conducted in Cuba-Khachmaz Region 18 species are recorded. To clarify the current state of fauna and nature of the propagation of leaf beetles injuring agricultural plants in the region, and to establish links with certain environmental conditions and rationalization measures against the most harmful species, the importance of finding the distribution of leaf beetles on individual habitats and on the basis of the materials give some data on the biological and ecological features in the territory of Cuba-Khachmaz Region.Main conclucasions. Leaf beetles registered for Cuba-Khachmaz Region of Azerbaijan belong to 8 genera and 18 species of the subfamily Chrysomelinae: 8 species of the genus Chrysolina, 2 species of Chrysomela, 1 species of Colaphellus, 2 species of Entomoscelis, 1 species of Qastrophysa, 2species of Phratora and 2 species of Phaedon. Among them, 3 species are recorded for the first time for the fauna of Azerbaijan and 4 species for the fauna of Cuba-Khachmaz Region.

Clusters of ancestrally related genes that show paralogy in whole or in part are a major feature of the genomes of humans and other species.

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Michael B Walker

Full Text Available Arrangements of genes along chromosomes are a product of evolutionary processes, and we can expect that preferable arrangements will prevail over the span of evolutionary time, often being reflected in the non-random clustering of structurally and/or functionally related genes. Such non-random arrangements can arise by two distinct evolutionary processes: duplications of DNA sequences that give rise to clusters of genes sharing both sequence similarity and common sequence features and the migration together of genes related by function, but not by common descent. To provide a background for distinguishing between the two, which is important for future efforts to unravel the evolutionary processes involved, we here provide a description of the extent to which ancestrally related genes are found in proximity.Towards this purpose, we combined information from five genomic datasets, InterPro, SCOP, PANTHER, Ensembl protein families, and Ensembl gene paralogs. The results are provided in publicly available datasets (http://cgd.jax.org/datasets/clustering/paraclustering.shtml describing the extent to which ancestrally related genes are in proximity beyond what is expected by chance (i.e. form paraclusters in the human and nine other vertebrate genomes, as well as the D. melanogaster, C. elegans, A. thaliana, and S. cerevisiae genomes. With the exception of Saccharomyces, paraclusters are a common feature of the genomes we examined. In the human genome they are estimated to include at least 22% of all protein coding genes. Paraclusters are far more prevalent among some gene families than others, are highly species or clade specific and can evolve rapidly, sometimes in response to environmental cues. Altogether, they account for a large portion of the functional clustering previously reported in several genomes.

Determination of Mineral Contents of Some Legume and Cereal Forages Grown as Naturally in Pastures of Erzurum Province

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Esra GÜRSOY

2017-06-01

Full Text Available This study was carried out to determine the mineral substances such as macro and micro minerals of legume and cereal forages grown as naturally in the pastures of Erzurum province. In present study, clover, (Medicago sativa, mountain hispanic sainfoin (Hedysarum elegans, bird vetch (Vicia cracca, hairy vetch (Vicia villosa, mountain vetch (Vicia alpestris, mountain clover (Trifolium montanum, caucasian clover (Trifolium ambiguum, the three-headed clover (Trifolium trichocephalum, tawny grass crown (Coronilla varia, the crown of the eastern horn of grass (Coronilla orientatis and yellow flowers gazelle (Lotus corniculatus from legume forages; cocksfoot (Dactylis glomerata, crested wheatgrass (Agropyron cristatum, red fescue (Festuca rubra, sheep ball (Festuca ovina, tawny bromine (Bromus variegatus, blue split (Agropyron intermedium, kelp tail grass (Phleum pratense, meadow bluegrass (Poa pratensis from cereal forages were investigated. The obtained data were subjected to an analysis of variance by using SPSS 12.0 package program. Significant differences between means were tested by using Duncan’s Multiple Range Test. Macro minerals such as Nitrogen (N, Phosphorus (P, Potassium (K, Calcium (Ca, Magnesium (Mg and Sulfur (S assigned for legume forages changed between 2.39- 3.30%, 1.16-1.28%, 0.70-2.69%, 0.56-1.61%, 0.11-0.51% and 0.16-0.27%, respectively. The amounts of micro mineral like Iron (Fe, Virgin (Cu, Zinc (Zn, Manganese (Mn and Boron (B of legume forages were determined to be 105.9-893.7 ppm, 2.22-12.36 ppm, 14.11-195 ppm, 18.18-66.58 ppm and 5.91-40.39 ppm, respectively. Instances of macro minerals of cereal forages were found for N 1.76-of 2.19%, P 1.10-1.19%, K 1.99-3.25%, Ca 0.09-1.15%, Mg 0.07-0.26% and S 0.22-0.36% in present study. Micro minerals such as Fe, Cu, Zn, Mn and B determined for cereal forages changed between 74.90-630.6 ppm, 4-9.84 ppm, 31.49-335.6 ppm, 24.63-94.51 ppm and 0.35-26.64 ppm, respectively. In conclusion

Experimental evaluation of ALS point cloud ground extraction over different land cover in the Malopolska Province

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Korzeniowska, Karolina; Mandlburger, Gottfried; Klimczyk, Agata

2013-04-01

The paper presents an evaluation of different terrain point extraction algorithms for Airborne Laser Scanning (ALS) point clouds. The research area covers eight test sites in the Małopolska Province (Poland) with varying point density between 3-15points/m² and surface as well as land cover characteristics. In this paper the existing implementations of algorithms were considered. Approaches based on mathematical morphology, progressive densification, robust surface interpolation and segmentation were compared. From the group of morphological filters, the Progressive Morphological Filter (PMF) proposed by Zhang K. et al. (2003) in LIS software was evaluated. From the progressive densification filter methods developed by Axelsson P. (2000) the Martin Isenburg's implementation in LAStools software (LAStools, 2012) was chosen. The third group of methods are surface-based filters. In this study, we used the hierarchic robust interpolation approach by Kraus K., Pfeifer N. (1998) as implemented in SCOP++ (Trimble, 2012). The fourth group of methods works on segmentation. From this filtering concept the segmentation algorithm available in LIS was tested (Wichmann V., 2012). The main aim in executing the automatic classification for ground extraction was operating in default mode or with default parameters which were selected by the developers of the algorithms. It was assumed that the default settings were equivalent to the parameters on which the best results can be achieved. In case it was not possible to apply an algorithm in default mode, a combination of the available and most crucial parameters for ground extraction were selected. As a result of these analyses, several output LAS files with different ground classification were achieved. The results were described on the basis of qualitative and quantitative analyses, both being in a formal description. The classification differences were verified on point cloud data. Qualitative verification of ground extraction was

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

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Oliver C Redfern

2007-11-01

Full Text Available We present CATHEDRAL, an iterative protocol for determining the location of previously observed protein folds in novel multidomain protein structures. CATHEDRAL builds on the features of a fast secondary-structure-based method (using graph theory to locate known folds within a multidomain context and a residue-based, double-dynamic programming algorithm, which is used to align members of the target fold groups against the query protein structure to identify the closest relative and assign domain boundaries. To increase the fidelity of the assignments, a support vector machine is used to provide an optimal scoring scheme. Once a domain is verified, it is excised, and the search protocol is repeated in an iterative fashion until all recognisable domains have been identified. We have performed an initial benchmark of CATHEDRAL against other publicly available structure comparison methods using a consensus dataset of domains derived from the CATH and SCOP domain classifications. CATHEDRAL shows superior performance in fold recognition and alignment accuracy when compared with many equivalent methods. If a novel multidomain structure contains a known fold, CATHEDRAL will locate it in 90% of cases, with <1% false positives. For nearly 80% of assigned domains in a manually validated test set, the boundaries were correctly delineated within a tolerance of ten residues. For the remaining cases, previously classified domains were very remotely related to the query chain so that embellishments to the core of the fold caused significant differences in domain sizes and manual refinement of the boundaries was necessary. To put this performance in context, a well-established sequence method based on hidden Markov models was only able to detect 65% of domains, with 33% of the subsequent boundaries assigned within ten residues. Since, on average, 50% of newly determined protein structures contain more than one domain unit, and typically 90% or more of these

Defining an essence of structure determining residue contacts in proteins.

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Sathyapriya, R; Duarte, Jose M; Stehr, Henning; Filippis, Ioannis; Lappe, Michael

2009-12-01

The network of native non-covalent residue contacts determines the three-dimensional structure of a protein. However, not all contacts are of equal structural significance, and little knowledge exists about a minimal, yet sufficient, subset required to define the global features of a protein. Characterisation of this "structural essence" has remained elusive so far: no algorithmic strategy has been devised to-date that could outperform a random selection in terms of 3D reconstruction accuracy (measured as the Ca RMSD). It is not only of theoretical interest (i.e., for design of advanced statistical potentials) to identify the number and nature of essential native contacts-such a subset of spatial constraints is very useful in a number of novel experimental methods (like EPR) which rely heavily on constraint-based protein modelling. To derive accurate three-dimensional models from distance constraints, we implemented a reconstruction pipeline using distance geometry. We selected a test-set of 12 protein structures from the four major SCOP fold classes and performed our reconstruction analysis. As a reference set, series of random subsets (ranging from 10% to 90% of native contacts) are generated for each protein, and the reconstruction accuracy is computed for each subset. We have developed a rational strategy, termed "cone-peeling" that combines sequence features and network descriptors to select minimal subsets that outperform the reference sets. We present, for the first time, a rational strategy to derive a structural essence of residue contacts and provide an estimate of the size of this minimal subset. Our algorithm computes sparse subsets capable of determining the tertiary structure at approximately 4.8 A Ca RMSD with as little as 8% of the native contacts (Ca-Ca and Cb-Cb). At the same time, a randomly chosen subset of native contacts needs about twice as many contacts to reach the same level of accuracy. This "structural essence" opens new avenues in the

IMPACTUL REMEDIULUI BioR ASUPRA UNOR PARAMETRI AI SISTEMULUI PROOXIDANT (OXIDANT-ANTIOXIDANT LA PREPELIŢELE ADULTE

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Ana MACARI

2015-12-01

Full Text Available Problema stimulării productivităţii în avicultură, pentru asigurarea consumatorilor cu alimente de înaltă calitate, devine din ce în ce mai stringentă la nivel mondial. Studiul a avut drept scop evaluarea efectelor remediului BioR asupra indicilor marker ai peroxidării lipidelor (PLO şi ai sistemului antioxidant (SAO la prepeliţele adulte crescute în condiţii fiziologice de producţie. Studiul a fost realizat pe 5 loturi de prepeliţe. Remediul BioR a fost administrat de două ori: la începutul studiului şi la 7-10 zile după prima administrare, în doze diferite. S-a constatat că administrarea remediului BioR determină îmbunătăţirea indicilor sistemului PLO - SAO şi activitatea majorităţii indicilor evaluaţi depinde direct sau indirect de doza utilizată, momente ce trebuie să fie luate în considerare atunci când se alege doza optimă a remediului.THE IMPACT OF THE BioR REMEDY ON THE PARAMETERS OF THE PRO-OXIDANT (OXIDANT-ANTIOXIDANT SYSTEM IN ADULT QUAILSThe problem of aviculture productivity stimulation in order to ensure consumers with high quality food is becoming increasingly stringent worldwide. The study aimed to assess the effects of the BioR remedy on the marker indices of lipid peroxidation (LPO and antioxidant system (AOS in adult quails bred under physiological production conditions. The research was conducted on 5 lots of quails. The BioR remedy was administered twice: at the beginning of the study, and at the 7-10th day after the first administration, in different doses. It was found that the BioR remedy administration leads to the improvement of POL-SAO system indices, and the level or activity of the most evaluated indices depended directly or indirectly on the used dose, which must be taken into account when selecting the optimal dose of the remedy.

Aplicação de misturas de diuron com MSMA, e com paraquat, no controle de plantas daninhas de folhas largas em cultura de algodão (Gossypium hirsutum L. Mixture of diuron whit MSMA and with paraquat for broadleaved weeds control in cotton

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L. S. P. Cruz

1978-01-01

Full Text Available Em ensaio de campo conduzido em 1975/76 procurou-se avaliar a ação de misturas de MSMA com diuron e de paraquat com diuron, aplicadas em pós-emergência, em jato dirigido, em duas épocas diferentes, no controle de algumas plantas daninhas de folhas largas em algodão: carrapicho- do-campo (Acanthospermum australe (Loef O. Kuntze , falsa-poaia (Borreria ala ta (Aubl DC, poaia-branca (Richardia brasiliensis Gomez e guanxuma (Sida spp . A vegetação natural da área do ensaio era formada ainda pela gramínea capim-de-colchão (Digitaria sanguinalis (L. Scop . Os resultados mostraram que as misturas de 2,00 kg e 2,70 kg/ha de MSMA com, respectivamente 0,30 kg e 0,40 kg/ha de diuron, e a mistura de 0.60 kg/ha de paraquat com 0,60 kg/ ha de diuron, foram eficientes no co ntro le daquelas dicotiledôneas, e também no da gramínea. Todos os tratamentos provocaram leves sintomas de fitotoxicidade nos algodoeiros, mas desapareceram depois e não prejudicaram o desenvolvimento vegetativo das plantas, assim como a produção de algodão em caroço.In a field trial carried out in 1975/76, a diuron mixtu re with MSMA and another with paraquat was tested on broadleaved weeds in cotton crops. The applications were done in postemergence, directed-spray, in two different periods. The broadleaved weeds observed in the trial were Acanthospermum australe , Borreria alata, Richardia brasiliensis, and Sida spp, also the grass Digitaria sanguinalis. Best results were obtained with the mixture of 0,60 kg/ha of paraquat with 0,60 kg/ha of diuron, and 2,70 kg/ha of MSMA with 0,40 kg/ ha of diuron, or 2,00 kg/ha of MSMA with 0,30 kg/ha of diuron. All the treatments caused sl ight symptons of toxic ity in cotton, which disappeared later and did not damage the production.

Sistemas de control de malezas en maiz (Zea mays L.: efecto de metodos de control, densidad y distribucion del cultivo Weed control systems in corn: effects of control methods, density and plant distribution

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G. Martinez

1982-12-01

Full Text Available Con el objetivo de integrar diferentes prácticas culturales en un sistema de control de malezas en maíz, se instaló un ensayo en el Campo Experimental de la Universidad Autónoma Chapingo (México (2250 msnm, precipitación media anual 550 mm, suelo franco, 1.7% M.O. bajo condiciones de secano, en donde se evaluaron dos densidades (44.400 y 66.600 pl/ha, dos distribuciones (normal y equidistante y siete métodos de control de malezas (cyanazine + alachlor (1,2 + 1,92 kg/ha, atrazine + alachlor (1,2 + 1,44 kg/ha, un escarda, dos escardas, testigo siempre desmalezado, testigo siempre desmalezado + dos escardas y testigo siempre enmalezado. Las principales malezas presentes fueron: quelite (Amaranthus sp., perlilla (Lopezia mexicana Jacq., rosilla chita (Galinsoga parviflora Cav., acahual (Encelia mexicana Mart., Sporobulus poiretti (Roem, et Sch. Hichc. y fresadilla (Digitaria sanguinalis (L. Scop.. El aumento de la densidad de siembra no se reflejó en el control de malezas, incidencia de enfermedades, crescimiento vegetativo y reproductivo del cultivo. La distribución equidistante aparejó un mejor control de malezas, en relación a la distribución normal, pero la incidencia de enfermedades fue mayor, lo que quizá pudo haber determinado la ausencia de diferencias en crecimiento vegetativo, un menor número de mazorcas/ha y consecuentemente la ausencia de respuesta en rendimiento de grano. De los tratamientos químicos, atrazine + alachlor tuvo un comportamiento superior a cyanazine + alachlor, en control de malezas, aunque sólo fue detectable estadisticamente en las evaluaciones. No hubo diferencia entre ambos en la incidencia de enfermedades, ni en su efecto sobre el cultivo. aunque el rendimiento de cyanazine + alachlor fue ligeramente inferior. Los métodos químicos fueron superiores a los mecánicos en control de malezas, pero no difirie -ron en la incidencia de enfermedades ni en los parámetros de desarrollo del cultivo. La

A cross-cultural comparison of folk plant uses among Albanians, Bosniaks, Gorani and Turks living in south Kosovo.

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Mustafa, Behxhet; Hajdari, Avni; Pieroni, Andrea; Pulaj, Bledar; Koro, Xhemajli; Quave, Cassandra L

2015-05-12

Kosovo represents a unique hotspot of biological and cultural diversity in Europe, which allows for interesting cross-cultural ethnobotanical studies. The aims of this study were twofold: 1) to document the state of traditional knowledge related to local (esp. wild) plant uses for food, medicine, and handicrafts in south Kosovo; and 2) to examine how communities of different ethnic groups in the region (Albanians, Bosniaks/Gorani, and Turks) relate to and value wild botanical taxa in their ecosystem. Field research was conducted in 10 villages belonging to the Prizren municipality and 4 villages belonging to the Dragash municipality, located in the Sharr Mountains in the southern part of Kosovo. Snowball sampling techniques were used to recruit 139 elderly informants (61 Albanians, 32 Bosniaks/Gorani and 46 Turks), for participation in semi-structured interviews regarding the use of the local flora for medicinal, food, and handicraft purposes. Overall, we recorded the local uses of 114 species were used for medicinal purposes, 29 for food (wild food plants), and 20 in handicraft activities. The most important species used for medicinal purposes were Achillea millefolium L., Sambucus nigra L., Urtica dioica L., Tilia platyphyllos Scop. Hypericum perforatum L., Chamomilla recutita (L.) Rauschert, Thymus serpyllum L. and Vaccinium myrtillus L. Chamomilla recutita was the most highly valued of these species across the populations surveyed. Out of 114 taxa used for medicinal purposes, only 44 species are also included in the European Pharmacopoeia. The predominantly quoted botanical families were Rosaceae, Asteraceae, and Lamiaceae. Comparison of the data recorded among the Albanian, Bosniak/Gorani, and Turkish communities indicated a less herbophilic attitude of the Albanian populations, while most quoted taxa were quoted by all three communities, thus suggesting a hybrid character of the Kosovar plant knowledge. Cross-cultural ethnobiological studies are crucial in

Abnormalities in soluble CD147 / MMPs / TIMPs axis in Ankylosing Spondylitis patients with and without a history of Acute Anterior Uveitis / Anomalii ale axei CD147 solubil / MMPs / TIMPs la pacienții cu spondilită anchilozantă cu sau fără uveită acută anterioară

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Mitulescu Traian Costin

2014-12-01

Full Text Available Spondilita Anchilozantă (SA este prototipul formei axiale a spondiloartritelor. În pofida studiilor extinse, sunt încă incomplet înțelese mecansimele complexe legate de procesele celulare și moleculare anormale din SA. Printre mediatorii inflamației, cum ar fi citokinele proinflamatoare, NOS-2, chemokinele, care conduc la inflamație, metaloproteinazele de matrice (MMPs joacă un rol important în procesele inflamatoare care caracterizează SA. De aceea, ne-am propus să evaluăm dacă perturbări ale homeostaziei inductorului extracelular de MMPs (EMMPRIN/CD147, MMPs și inhibitorilor tisulari ai MMPs (TIMPs joacă un rol în evoluția SA în special la pacienții care au în istoricul lor Uveită Acută Anterioară (UAA. În acest scop seruri de la pacienți cu SA și de la donatori sănătoși (DS au fost analizate pentru nivelurile de CD147 solubil (sCD147, MMP-3 și TIMP-1 prin tehnica imunoenzimatica ELISA și pentru activitatea gelatinazelor MMP-2 si MMP-9 folosind gelatin zimografia. Rezultatele experimentale au arătat că nivelurile de sCD147, MMP-3 si TIMP-1 sunt semnificativ crescute la pacienții cu SA comparativ cu DS. sCD147 ca și raportul MMP-2/sCD147 a diferențiat pacienții cu UAA de cei fără UAA în istoricul lor. La pacienții cu SA rapoartele MMP-2/sCD147, MMP-3/sCD147 și MMP-3/TIMP-1 au sugerat dezechilibrul dintre MMPs și reglatorii lor. Aceste rezultate sugerează că rapoartele MMPs/sCD147 pot deveni biomarkeri potențiali pentru întărirea caracterizării pacienților cu SA și pentru a prognoza evoluția bolii. Corelațiile pozitive și negative dintre anumite caracteristici experimentale și/sau clinice ale pacienților cu SA și terapie subliniază de asemenea utilitatea evaluării acestor biomarkeri pentru a identifica o terapie individualizată și eficientă.

Assessment of environmental and health risks in former polymetallic ore mining and smelting area, Slovakia: Spatial distribution and accumulation of mercury in four different ecosystems.

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Árvay, Július; Demková, Lenka; Hauptvogl, Martin; Michalko, Miloslav; Bajčan, Daniel; Stanovič, Radovan; Tomáš, Ján; Hrstková, Miroslava; Trebichalský, Pavol

2017-10-01

Former long-term mining and smelting of pollymetallic ores in the Middle Spiš area caused a serious contamination problem of the environment with heavy metals and metalloids, especially mercury (Hg). Several studies have reported concentration of Hg in the area but this paper provides first detailed characterization of Hg contamination of different environmental components in agricultural, forest, grassland and urban ecosystems. The ecosystems are in different distances from emission sources - former mercury and copper smelting plants in NE Slovakia. Total Hg content was studied in soil/substrate samples (n = 234) and characteristic biological samples (Athyrium filix-femina (L.) Roth, Macrolepiota procera (Scop.) Singer, Boletus edulis Bull., Cyanoboletus pulverulentus (Opat.) Gelardi, Vizzini & Simonini, Triticum aestivum (L.), Poa pratensis (L.)) (n = 234) collected in the above-mentioned ecosystems. The level of contamination and environmental risks were assessed by contamination factor (C f ), index of geoaccumulation (I geo ) and potential environmental risk index (PER). To determine the level of transition of Hg from abiotic to biotic environment, bioconcentration factor (BCF) was used. To determine a health risk resulting from regular and long-term consumption of the locally available species, the results of the Hg content were compared with the Provisional Tolerable Weekly Intake (PTWI) for Hg defined by World Health Organization. The results suggest that almost 63% of the area belong to the very high risk category and 80% of the sampling sites shown very high contamination factor. Geoaccumulation index showed that almost 30% of the area is very strongly contaminated and only 8% is not contaminated with Hg. Spearman's correlation relationship confirmed that the values of PER, BCF, C f and I geo decreased with an increasing distance from the pollution source. The percentage of contribution to PTWI ranged between 5.76-69.0% for adults and 11.5-138% for

Comparison of extraction methods for the analysis of natural dyes in historical textiles by high-performance liquid chromatography.

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Valianou, Lemonia; Karapanagiotis, Ioannis; Chryssoulakis, Yannis

2009-12-01

Different methods for the extraction of Dactylopius coccus Costa, Rubia tinctorum L., Isatis tinctoria L., Reseda luteola L., Curcuma longa L. and Cotinus coggygria Scop. from wool fibres are investigated using high-performance liquid chromatography with diode array detector (HPLC-DAD). The efficiencies of five extraction methods which include the use of HCl (widely used extraction method), citric acid, oxalic acid, TFA and a combination of HCOOH and EDTA are compared on the basis of the (a) number, (b) relative quantities, measured as HPLC peak areas and (c) signal-to-noise ratios (S/N) of the compounds extracted from the wool substrates. Flavonoid glycosides and curcuminoids contained in R. luteola L. and C. longa L., respectively, according to liquid chromatography with mass spectrometry (LC-MS) identifications, are not detected after treating the fibres with HCl. All the other milder methods are successful in extracting these compounds. Experiments are performed using HPLC-DAD to compare the HPLC peak areas and the S/N of the following extracted compounds: indigotin, indirubin, curcumin, demethoxycurcumin, bisdemethoxycurcumin, fisetin, sulfuretin, luteolin, luteolin-7-O-glucoside, apigenin, carminic acid, alizarin, puruprin and rubiadin. It is shown that the TFA method provides overall the best results as it gives elevated extraction yields except for fisetin, luteolin, apigenin and luteolin-7-O-glucoside and highest S/N except for fisetin and luteolin-7-O-glucoside. It is noteworthy that treatment of the fibres with the typical HCl extraction method results overall in very low S/N. The TFA method is selected for further studies, as follows. First, it is applied on silk dyed samples and compared with the HCl method. The same relative differences of the TFA and HCl methods observed for the wool dyed samples are reported for the silk dyed samples too, except for rubiadin, luteolin and apigenin. Thus, in most cases, the nature of the substrate (wool or silk

Medicinal plants used in treatment and management of cancer in Kakamega County, Kenya.

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Ochwang'i, Dominic O; Kimwele, Charles N; Oduma, Jemimah A; Gathumbi, Peter K; Mbaria, James M; Kiama, Stephen G

2014-02-12

, Solanum mauritianum Scop, Spathodea campanulata P. Beauv. ssp. nilotica (Seem), Spermacoce princea (K. Schum.) Verdc., Tabernaemontana stapfiana Britten, Tragia brevipes Pax and Zanthoxylum gilletii (De Wild.) P.G.Waterman. The most frequently used plant parts were fresh or dried leaves and stem barks. Administration to patients was almost exclusively oral, with the exceptions being topical application especially for breast cancer and skin sarcomas. This study identified diverse medicinal plants used in therapeutic and management intervention against cancer by communities living adjacent to Kakamega Tropical Rainforest. The primary mode of administration was oral. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

USE OF THE PHOTOGRAMMETRIC DATA FOR VEGETATION INVENTORY ON URBAN A REAS

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Kubalska Joanna Lucyna

2014-12-01

Full Text Available This paper discusses the methodology of the implementation of an inventory of vegetation in an urban area using photogrammetric data in the form of color NIR "true - orthophotomap" (true - ortho and the digital surface model (DSM created with data from airborne laser scanning, or alternatively, with an automatic correlation of images. The vegetation inventory was conducted by classification on the basis of the characteristics contained in pixels of georeferenced true - ortho while taking into account the elevation data in the form of gridded DSM. To carry out the classification Erdas Imagine software was used. The correct classification process was preceded by the creation of the input data for this task. This data was obtained from the processing of digital aerial photos taken by a Vexcel UltraCam camera with the ground resolution GSD = 10cm and point clouds acquired from ALS. This processing included the generation of digital terrain model in the SCOP++ environment and the digital surface model in an Opals and Inpho environment.T he Comparison of DSM created from two different sources of data showed the overall consistency and uniformity and the ability to use both models to generate a true - ortho product from digital aerial photographs. The work was performed on an INPHO photogrammetric workstation. "True - ortho" was generated from both the black and white NIR images and colour images. The classification carried out with the Erdas Imagine software proved that this software is suitable for classification based on the features extracted from the pixels with the simultaneous analysis of elevation data. Simultaneous use of data both from airborne laser scanning and colour infrared images made it possible to make an exact classification of vegetation on very difficult terrain, like built up urban areas. The results of the classification accuracy were evaluated by the visual verification in Google Street View application. At a time when airborne

Use of the photogrammetric data for vegetation inventory on urban areas. (Polish Title: Wykorzystanie danych fotogrametrycznych do inwentaryzacji zieleni na terenach zurbanizowanych)

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Kubalska, J. L.; Preuss, R.

2014-12-01

This paper discusses the methodology of the implementation of an inventory of vegetation in an urban area using photogrammetric data in the form of color NIR "true - orthophotomap" (true - ortho) and the digital surface model (DSM) created with data from airborne laser scanning, or alternatively, with an automatic correlation of images. The vegetation inventory was conducted by classification on the basis of the characteristics contained in pixels of georeferenced true - ortho while taking into account the elevation data in the form of gridded DSM. To carry out the classification Erdas Imagine software was used. The correct classification process was preceded by the creation of the input data for this task. This data was obtained from the processing of digital aerial photos taken by a Vexcel UltraCam camera with the ground resolution GSD = 10cm and point clouds acquired from ALS. This processing included the generation of digital terrain model in the SCOP++ environment and the digital surface model in an Opals and Inpho environment. The Comparison of DSM created from two different sources of data showed the overall consistency and uniformity and the ability to use both models to generate a true - ortho product from digital aerial photographs. The work was performed on an INPHO photogrammetric workstation. "True - ortho" was generated from both the black and white NIR images and colour images. The classification carried out with the Erdas Imagine software proved that this software is suitable for classification based on the features extracted from the pixels with the simultaneous analysis of elevation data. Simultaneous use of data both from airborne laser scanning and colour infrared images made it possible to make an exact classification of vegetation on very difficult terrain, like built up urban areas. The results of the classification accuracy were evaluated by the visual verification in Google Street View application. At a time when airborne platforms are

Ability of 3 tanniferous forage legumes to modify quality of milk and Gruyère-type cheese.

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Girard, M; Dohme-Meier, F; Wechsler, D; Goy, D; Kreuzer, M; Bee, G

2016-01-01

Condensed tannins (CT) may affect ruminal biohydrogenation of dietary polyunsaturated fatty acids. A feeding experiment was conducted with 24 Holstein cows to evaluate whether diets containing CT from different forage legumes can increase polyunsaturated fatty acids, especially n-3 fatty acid content in milk and cheese, without affecting negatively their physicochemical and sensorial properties. Cows were assigned to 4 treatment groups (n=6) for 52 d, divided into 2 periods: a control period (CoP) and an experimental period (ExP). During the CoP, cows received a basal diet composed of hay, corn silage, ExtruLin (Trinova Handel & Marketing AG, Wangen, Switzerland), concentrate, and alfalfa (AF) in a ratio of 45:25:5:7:18. In the ExP, in 3 of the 4 groups AF was replaced by either sainfoin (SF; 19% CT in dry matter) or 1 of 2 cultivars of birdsfoot trefoil [Polom (BP), 3% CT; Bull (BB), 5% CT]. At the end of each period, milk was collected on 3 consecutive days and analyzed for milk gross composition and fatty acid profile and was processed to Gruyère-type cheese. A trained panel assessed the sensory quality of raw milk and cheese using discriminative and descriptive tests. This experimental design consisting of AF in both the CoP and ExP allowed us to quantify effects due to lactation stage and experimental diets. In both the CoP and ExP, dry matter intake and milk yield did not differ among treatment groups. From the CoP to the ExP, milk urea content was reduced by 23% with SF, remained unchanged with BP, and tended to increase with AF and BB. The odor of the raw BB milk was judged to be different from AF milk. With SF, switching from the CoP to the ExP resulted in a 17% increase of the 18:3n-3 proportion in milk and cheese lipids. In BP cheese, the increase was 3%, whereas it tended to decrease in BB cheese. Additionally, the 20:5n-3 and 22:5n-3 proportions tended to increase in SF cheese from the CoP to the ExP. Compared with the AF cheeses, cheeses from cows

Comparison of species-rich cover crop mixtures in Hungarian vineyards

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Donkó, Adam; Miglécz, Tamas; Valkó, Orsolya; Török, Peter; Deák, Balazs; Kelemen, Andras; Zanathy, Gabor; Drexler, Dora

2014-05-01

In case of vine growing, agricultural practices of the past decades - as mechanical cultivation on steep vineyard slopes - can endanger the soil of vineyards. Moreover, climate change scenarios predict heavier rainstorms, which can also promote the degradation of the soil. These are some of the reasons why sustainable floor management plays an increasingly important role in viticulture recently. The use of cover crops in the inter-row has a special importance, especially on steep slopes and in case of organic farming to provide conditions for environmental friendly soil management. Species-rich cover crop seed mixtures may help to prevent erosion and create easier cultivation circumstances. Furthermore they have a positive effect on soil structure, soil fertility and ecosystem functions. However, it is important to find suitable seed mixtures for specific production sites, consisting ideally of native species from local provenance, adapted to the local climate/vine region/vineyard. Requirements for suitable cover crop species are as follows: they should save the soil from erosion and also from compaction caused by the movement of workers and machines, they should not compete significantly with the grapevines, or influence produce quality. We started to develop and apply several species-rich cover crop seed mixtures in spring 2012. During the experiments, three cover crop seed mixtures (Biocont-Ecovin mixture, mixture of legumes, mixture of grasses and herbs) were compared in vineyards of the Tokaj and Szekszárd vine regions of Hungary. Each mixture was sown in three consecutive inter-rows at each experimental site (all together 10 sites). Besides botanical measurements, yield, must quality, and pruning weight was studied in every treatment. The botanical survey showed that the following species of the mixtures established successfully and prospered during the years 2012 and 2013: Coronilla varia, Lotus corniculatus, Medicago lupulina, Onobrychis viciifolia

The phytosanitary form and fighting measures diseases and pests of sugar beet from Republic of Moldova

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Timus Asea M.

2006-01-01

Full Text Available Sugar beet is one of the most important agricultural crops in the Republic of Moldova. The North and Central regions have good enough pedoclimatic conditions. The genetic potential of sorts and hybrids can be created through the application of modern technologies in order to grow at least 32-35 tons/ha of sugar beet roots. In the Republic of Moldova, sugar beet vegetates between 160 and 180 days in the first year and needs approximately an amount of 2400-2900°C, average of 15.3-15.4°C. Each phenological phase needs different temperatures: at least 4C° is necessary for planting and springing an amount of 650°C is necessary for foliar apparatus; an amount of 1150- 1800°C is necessary to grow the volume of roots and for sugar depositing the average of 2400 to 2600°C is necessary. The mentioned temperatures ensure a normal development of sugar beet plants. If these temperatures fluctuate, the pathogens and pests are stimulated to develop. The most frequent diseases of sugar beet are: Pythium de baryanum Hesse., Aphanomyces cochlioides Dresch. Peronospora schachtii Fuck., Phoma betae Fr. Cercospora beticola Sacc. Erysiphe communis Grev. f. betae Jacz., virosis - Beta virus 2, 3 si 4 etc. The main pests belong to the following categories: Homoptera: Aphis fabae Scop. (fam. Aphididae, Pemphigus fuscicornis Koch. (fam. Pemphigidae Coleoptera: Agriotes sp. (fam. Elateridae, Chaetocnema concinna M. Ch. breviuscula Fld., Cassida nebulosa L. (fam. Chrysomelidae, Atomaria linearis Step. (fam. Cryptophagidae; Bothynoderes punctiventris Germ., Tanymechus dilaticollis Gyll., T. palliatus F., Psalidium maxillosum F. (Curculionidae; Lepidoptera: Agrotis segetum Den. et Schiff., Authographa gamma L. Mamestra (Barathra brassicae L. (Noctuidae, Loxostege sticticalis L. (Pyralidae, Gnorimoschema ocellatella Boyd.; Diptera Pegomyia betae Curtis. (fam. Anthomyidae. Heterodera schachtii Schmidt (Heteroderidae. The most recommended insecticides for fighting the

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

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Melvin, Iain; Ie, Eugene; Kuang, Rui; Weston, Jason; Stafford, William Noble; Leslie, Christina

2007-05-22

Predicting a protein's structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing new representations for protein sequences, called string kernels, for use with support vector machine (SVM) classifiers. However, while some of these approaches exhibit state-of-the-art performance at the binary protein classification problem, i.e. discriminating between a particular protein class and all other classes, few of these studies have addressed the real problem of multi-class superfamily or fold recognition. Moreover, there are only limited software tools and systems for SVM-based protein classification available to the bioinformatics community. We present a new multi-class SVM-based protein fold and superfamily recognition system and web server called SVM-Fold, which can be found at http://svm-fold.c2b2.columbia.edu. Our system uses an efficient implementation of a state-of-the-art string kernel for sequence profiles, called the profile kernel, where the underlying feature representation is a histogram of inexact matching k-mer frequencies. We also employ a novel machine learning approach to solve the difficult multi-class problem of classifying a sequence of amino acids into one of many known protein structural classes. Binary one-vs-the-rest SVM classifiers that are trained to recognize individual structural classes yield prediction scores that are not comparable, so that standard "one-vs-all" classification fails to perform well. Moreover, SVMs for classes at different levels of the protein structural hierarchy may make useful predictions, but one-vs-all does not try to combine these multiple predictions. To deal with these problems, our method learns relative weights between one-vs-the-rest classifiers and encodes information about the protein structural hierarchy for multi-class prediction. In large-scale benchmark results based on the SCOP database, our code weighting approach

Experience in Rearing Common Carder Bees (Bombus pascuorum Scop., with Some Notes on Three Similar Species: Shrill Carder Bee (B. sylvarum L., Red-shanked Carder Bee (B. ruderarius Müll., and Brown-banded Carder Bee (B. humilis Ill. (Hymenoptera: Apidae

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Vladimír Ptáček

2015-01-01

Full Text Available The rearing method under controlled conditions known for Bombus terrestris was successful in initiating egg-laying for 83% of B. pascuorum queens. After larvae had hatched, fresh pollen pellets needed to be inserted into brood pockets daily. After the first workers had emerged, colony development was advanced by placing them outdoors and supplying them with a sugar solution and pollen. The bees were able to use tightly pressed pollen from small plastic pots inserted near the brood. This feeding resulted in large colonies that produced dozens of young queens. In contrast, colonies managed in the laboratory were unable to utilize pollen in a similar manner. They raised only a few workers and several queens. Mating young queens was easy. It was stimulated by daylight, but in the case of B. humilis by direct sunshine. Several B. pascuorum and B. sylvarum queens were overwintered and began the new generation under artificial conditions. However, a lack of fresh pollen limited the development of colonies outside of the vegetation period.

Impact of emissions of Pridneprovsk TPP in Dnipropetrovsk on the anatomical indices of stem of two-year whip of the Tilia genus representatives

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Z. V. Gritzay

2015-09-01

Full Text Available The paper presents discussion of the results of studying the impact of environmental contamination because of emissions of Pridneprovsk TPP in Dnipropetrovsk city on the anatomical indices of stem of two-year whip of the Tilia genus representatives. Objects of study were T. platyphyllos Scop., T. europaea L. and T. cordata Mill. Material was collected in September 2015 on two sampling areas: experimental plot – tree plantations adjacent to Pridneprovsk TPP which emissions mainly comprise the pollutants such as sulfur dioxide, nitrogen oxides, particulate matter, with the share in total volume of emissions of the Plant being 67.3%, 18.7%, 13.3%, respectively; control plot (conditionally clean – territory of the Botanical garden of Oles Honchar Dnipropetrovsk National University. For research, two-year whips located in the apical portion of branches of the same order of branching were taken. Sections were made at the medium cross-line of the stem, and stained with the alcoholic solution of phloroglucinol. 30 sections for each species were measured on each sampling area. In the objects under study on technogenically contaminated area the changes in dimensions of histological elements of the stem were found and the nature of such changes had specific differences. T. platyphyllos and T. europaea under action of toxic emissions of TPP demonstrated the increase of total size of primary cortex of stem and width of its individual components (plug, collenchyma, cortex parenchyma, maintenance of stable dimensions of the bark and its histological elements (hard and soft bast, and in T. europaea the wood radius as well, which we considered as the indicators of relative stability of these species in technogenic environment. In T. cordata in the TPP emission zone we revealed the increase in the width of plug, cortex parenchyma, and total radius of primary cortex, which could provide certain tolerance of plants of this species in the adverse conditions of

Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.

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Zhu, Jianwei; Zhang, Haicang; Li, Shuai Cheng; Wang, Chao; Kong, Lupeng; Sun, Shiwei; Zheng, Wei-Mou; Bu, Dongbo

2017-12-01

Accurate recognition of protein fold types is a key step for template-based prediction of protein structures. The existing approaches to fold recognition mainly exploit the features derived from alignments of query protein against templates. These approaches have been shown to be successful for fold recognition at family level, but usually failed at superfamily/fold levels. To overcome this limitation, one of the key points is to explore more structurally informative features of proteins. Although residue-residue contacts carry abundant structural information, how to thoroughly exploit these information for fold recognition still remains a challenge. In this study, we present an approach (called DeepFR) to improve fold recognition at superfamily/fold levels. The basic idea of our approach is to extract fold-specific features from predicted residue-residue contacts of proteins using deep convolutional neural network (DCNN) technique. Based on these fold-specific features, we calculated similarity between query protein and templates, and then assigned query protein with fold type of the most similar template. DCNN has showed excellent performance in image feature extraction and image recognition; the rational underlying the application of DCNN for fold recognition is that contact likelihood maps are essentially analogy to images, as they both display compositional hierarchy. Experimental results on the LINDAHL dataset suggest that even using the extracted fold-specific features alone, our approach achieved success rate comparable to the state-of-the-art approaches. When further combining these features with traditional alignment-related features, the success rate of our approach increased to 92.3%, 82.5% and 78.8% at family, superfamily and fold levels, respectively, which is about 18% higher than the state-of-the-art approach at fold level, 6% higher at superfamily level and 1% higher at family level. An independent assessment on SCOP_TEST dataset showed consistent

Hippocampal long term memory: effect of the cholinergic system on local protein synthesis.

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Lana, Daniele; Cerbai, Francesca; Di Russo, Jacopo; Boscaro, Francesca; Giannetti, Ambra; Petkova-Kirova, Polina; Pugliese, Anna Maria; Giovannini, Maria Grazia

2013-11-01

The present study was aimed at establishing a link between the cholinergic system and the pathway of mTOR and its downstream effector p70S6K, likely actors in long term memory encoding. We performed in vivo behavioral experiments using the step down inhibitory avoidance test (IA) in adult Wistar rats to evaluate memory formation under different conditions, and immunohistochemistry on hippocampal slices to evaluate the level and the time-course of mTOR and p70S6K activation. We also examined the effect of RAPA, inhibitor of mTORC1 formation, and of the acetylcholine (ACh) muscarinic receptor antagonist scopolamine (SCOP) or ACh nicotinic receptor antagonist mecamylamine (MECA) on short and long term memory formation and on the functionality of the mTOR pathway. Acquisition test was performed 30 min after i.c.v. injection of RAPA, a time sufficient for the drug to diffuse to CA1 pyramidal neurons, as demonstrated by MALDI-TOF-TOF imaging. Recall test was performed 1 h, 4 h or 24 h after acquisition. To confirm our results we performed in vitro experiments on live hippocampal slices: we evaluated whether stimulation of the cholinergic system with the cholinergic receptor agonist carbachol (CCh) activated the mTOR pathway and whether the administration of the above-mentioned antagonists together with CCh could revert this activation. We found that (1) mTOR and p70S6K activation in the hippocampus were involved in long term memory formation; (2) RAPA administration caused inhibition of mTOR activation at 1 h and 4 h and of p70S6K activation at 4 h, and long term memory impairment at 24 h after acquisition; (3) scopolamine treatment caused short but not long term memory impairment with an early increase of mTOR/p70S6K activation at 1 h followed by stabilization at longer times; (4) mecamylamine plus scopolamine treatment caused short term memory impairment at 1 h and 4 h and reduced the scopolamine-induced increase of mTOR/p70S6K activation at 1 h and 4 h; (5

Nest-site competition between invasive and native cavity nesting birds and its implication for conservation.

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Charter, Motti; Izhaki, Ido; Ben Mocha, Yitzchak; Kark, Salit

2016-10-01

Nesting cavities are often a limited resource that multiple species use. There is an ongoing discussion on whether invasive cavity nesting birds restrict the availability of this key limited resource. While the answer to this question has important conservation implications, little experimental work has been done to examine it. Here, we aimed to experimentally test whether alien cavity nesting birds affect the occupancy of cavities and the resulting breeding success of native cavity breeders in a large urban park located in Tel Aviv, Israel. Over three breeding seasons, we manipulated the entry size of nest boxes and compared the occupancy and breeding success of birds in nest boxes of two treatments. These included nest boxes with large-entrance and small-entrance holes. The large-entrance holes allowed access for both the native and invasive birds (the two main aliens in the park are the common mynas and rose-ringed parakeets). The smaller-entrance boxes, on the other hand, allowed only the smaller sized native cavity breeders (great tits and house sparrows) to enter the boxes but prevented the alien species from entering. We found that the large-entrance nest boxes were occupied by five different bird species, comprising three natives (great tit, house sparrow, Scops owl) and two invasive species (common myna, rose-ringed parakeet) while the small-entrance boxes were only occupied by the two native species. The alien common mynas and rose-ringed parakeets occupied 77.5% of the large-entrance nest boxes whereas native species, mainly great tits, occupied less than 9% of the large-entrance boxes and 36.5% of the small-entrance boxes. When examining the occupancy of those cavities that were not occupied by the aliens, natives occupied both the small and large-entrance nest boxes equally. Three quarters (78%) of the great tits breeding in the large-entrance boxes were usurped by common mynas during the breeding season and as a result breeding success was

The Harry Potter effect: The rise in trade of owls as pets in Java and Bali, Indonesia

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Vincent Nijman

2017-07-01

Full Text Available Hundreds of species of wild-caught birds are offered for sale in the bird markets of Java and Bali, Indonesia, to meet the demand for the largely-domestic pet and songbird trade. In the past, owls were offered only in very small numbers in these bird markets but since the release of the Harry Potter series in Indonesia in the early 2000s their popularity as pets has increased. Whereas in the past owls were collective known as Burung Hantu (“Ghost birds”, in the bird markets they are now commonly referred to as Burung Harry Potter (“Harry Potter birds”. We made a retrospective quantitative assessment of the abundance of owls in the bird markets (1979–2010 and conducted 109 surveys in 20 bird markets in 2012–2016 to quantify owls in trade. In the 1980s, 1990s and early 2000s owls were rarely recorded in Indonesia's bird markets, typically one or two and up to five per survey, and frequently no owls were recorded at all. The trade was largely confined to small scops owls. In the late 2000s more species were offered for sale, including barn and bay owls, and larger owl species such as wood-owls, eagle-owls and fish-owls; typically 10 + owls were observed per survey. In recent years, the number of owl species increased even more, and on average we recorded 17 owls per survey, yielding a total of 1810 owls, and in >90% of the surveys owls were present. In the larger bird markets in Jakarta and Bandung typically 30 to 60 owls are on offer of up to 8 species at a time. The number of owls as a proportion of all birds in the markets increased from 0.43% post 2008, suggesting a delayed Harry Potter effect. Over this period, common species have become cheaper and less common ones have become more expensive. The owls are largely, if not exclusively, wild-caught and are sold into the domestic pet market. The release of Harry Potter films and novels in Indonesia coincided with the rise of the Internet and social media and, with some delay, the

Efeitos de herbicidas nos teores de macronutrientes e nas características tecnológicas da cana-de-açúcar (Saccharum spp.. I - Misturas de herbicidas em pós-emergência Effect of herbicides on the macronutrient levels and on the tecnologic characteristics of sugarcane (Saccharum spp. I - Mixtures of postemergence herbicides

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R. Victoria Filho

1980-12-01

Full Text Available A presente pesquisa foi conduzida em um Latossol Roxo, com 3,9% de matéria orgânica, na Usina São Carlos, município de Jaboticabal - SP com o objetivo de verificar o comportamento das principais misturas de herbicidas aplicadas em pós-emergência e suas possíveis interferências nos teores de macronutrientes, e no desenvolvimento da variedade CB 41-14. Os tratamentos utilizados com as respectivas doses do ingrediente ativo em kg/ha foram: ametryne + 2,4 - D (formulação comercial a 1,47 - 2,03, diuron + 2,4 -D a 1,60 + 2,16; ametryne + 2,4-D a 1,60 + 2,16; alachlor + 2,4-D a 1,09 + 1,80; asulam + ioxynil - 2,4-D a 2,80 + 1,75; MCPA + 2,4-D a 0,83 + 0,83; oxadiazon + 2,4 -D a 0,50 + 2,16; ametryne + simazine + 2,4-D a 1,25 + 1,25 + 2,16; ametryne + secbumetone + 2,4-D a 2,00 + 2,00 + 2,16; diuron + hexazinone + surfatante a 0,80 + 0,45 + 0,5% e MCPA + 2,3,6-TBA + pendimethalin + surfatante a 1,50 + 0,48 + 0,66 + 0,5%. O controle das plantas daninhas foi avaliado através de contagens por espécie botânica e por avaliações visuais . Sobre a cultura os efeitos foram constatados pela contagem da brotação inicial, avaliações visuais dos efeitos fitotóxicos, análise dos teores de macronutrientes aos 5 e 8 meses, medidas do comprimento dos colmos, análise dos teores de fibra, pol, brix, % de cana e pureza, assim como valores de pol/ha, e peso de colmos por hectare. Não houve interferência das diferentes misturas de herbicidas na brotação inicial, no comprimento médio dos colmos, e nos teores de fibra, pol, brix e pureza por ocasião da colheita. Em relação às principais plantas daninhas presentes na área, que eram capim-colchão (Digitaria sanguinalis (L. Scop. capim-coloniâo (Panicum maximum Jacq, beldroega (Portulacca oleracea L. e caruru (Amaranthus spp, as melhores porcentagens de controle foram obtidas com as misturas de ametryne + 2,4-D, MCPA + 2,4-D, oxadiazon + 2,4-D, ametryne + secbumetone, diuron + hexazinone e MCPA

Surveying a fossil oyster reef using terrestrial laser scanning

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Haring, A.; Exner, U.; Harzhauser, M.

2009-04-01

is suitable for answering certain questions of paleontologists and geologists. Finally, structural measurements may be performed in a geological software application, without treading on the fragile surface. On the other hand, paleontologists are interested in knowing if the oyster axes are aligned randomly or if they show a systematic alignment, in order to draw conclusions on the ocean currents at that time. For data processing, we use the 3D modeling software Geomagic Studio and the DTM (Digital Terrain Model) software SCOP++. The entire site has also been systematically documented by a large number of digital photographs. The obtained texture information allows a visual interpretation of the underlying surface. We discuss in how far such a 3D model derived from terrestrial laser scanner data may be useful to support the research work of geoscientists.

Could the long term cover change of three Mediterranean shrubs be explained by their photosynthetic responses to drought in a rainfall exclusion experiment ?

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Liberati, Dario; De Dato, Giovanbattista; Guidolotti, Gabriele; De Angelis, Paolo

2013-04-01

In the Mediterranean climates water stress is considered to be the main environmental factor limiting plant growth. In front of water limitations plants have developed a wide diversity of adaptation mechanism, and co-occurring species often display different physiological, functional, and life history strategies. In the contest of a rainfall exclusion experiment (project INCREASE), the present work is aimed to assess if the seasonal response of photosynthesis to the water stress (based on gas exchange data collected during 2010) can explain the long term change in the cover degree (assessed by seven pin point survey carried out from 2001 to 2012) of the three main species present in the Italian experimental site, Cistus monspeliensis L. (Cistaceae), Dorycnium pentaphyllum Scop. (Fabaceae) and Helichrysum italicum subsp. microphyllum (Willd.) Nyman (Asteraceae) From 2001 to 2012, in the untreated plots, the cover degree increased in C. monspeliensis (+ 0.34% per year), did not show any significant trend in D. pentaphyllum and decreased in H. italicum (- 1.54% per year). In the same period the rainfall exclusion system has worked during Spring and Autumn, mainly reducing the soil water content of the drought plots in Autumn: this treatment did not affect the cover trend of D. pentaphyllum and H. italicum, whereas C. monspeliensis displayed in the drought plots an opposite dynamic (- 1.23% per year) compared to the natural conditions. During 2010 all monitored species reached the maximum photosynthesis rates in spring, with a depression during summer drought and a recovery after the first Autumn rainfalls. The recovery of the spring rates was almost complete in C. monspeliensis and D. pentaphyllum, while in H. italicum did not exceed the 30% of the spring value. The rainfall exclusion reduced the photosynthesis rates in C. monspeliensis and H. italicum in Autumn. In the control plots the opposite cover trend observed in C. monspeliensis and H.italicum could be

Comportamento do herbicida metribuzin, aplicado isolado e em mistura com outros herbicidas, no controle de plantas daninhas em cafeeiros novos por dois anos consecutivos Effect of metribuzin, sprayed alone or in mixture with another herbicides, for weed control on young coffee trees, during two years

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L.S.P. Cruz

1985-12-01

Full Text Available Para se conhecer o comportamento do herbicida metribuzin, aplicado isolaso ou em mistura com outros herbicidas residuais (napropamide, pendimethalin, alchlor, oryzalin e diuron no controle de plantas daninhas que comumente infestam cafeeiros em formação, foi conduzido um experimento de campo onde esse herbicida a 0,28; 0,42; 0,56 e 0,70 kg/ha em mistura com napropamide a 4,00 kg/ha pendimethalin a 1,00 kg/ha, alachlor a 2,40kg/ha, oryzalin a 1,50 kg/ha ou com diuron a 1,20 kg/ha, comparado com duas testemunhas , onde, em uma, o mato foi mantido a níveis não competitivos com a cultura, por meios mecânicos, e outra onde o mato foi deixado desenvolver-se naturalmente, sem nenhuma interferência. Foi incluído também um tratamento com diuron a 1,20 kg/ha. A infestação natural de plantas daninhas da área do experimento era formada pelas gramínas, capim-de-colçhão (Digitaria sanguinalis (L. Scop, capim - marmelada (Brachiaria plantaginea (Link. Hitch capim-pé-de-galinha (Elcusine indica (L. Gaertn., Capim-favorito (Rhynchelitrum roseum (Nees Stapf eet Hubb, e pelas dicotiledôneas beldroega (Portulaca oleracea L., picão-branco (Galinsoga parviflora Cav., caruru-de-mancha (Amarantus virides L., amendoim bravo (Euphorbia heterophylla L., picão-preto (Bidens pilosa L., mentruz (Lepidium virginicum L., quebra-pedra (Phyllantus cordovadensis, Muell Arg. e falsa-serralha (Emilia sachifolia DC. Os resultados dos dois anos foram semelhantes para cada tratamento. Metribuzin a 0,28 kg/ha em mistura com napropamide a 4,00 kg/ha, apresentam períodos de ação maior, seguidos da mistura de metribuzin, naquela mesma dose, com oryzalin a 1,50 kg/ha. Não foi contatado a presença de qualquer sintoma de intoxicação nos cafeeiros, em todos os tratamentos, até a última observação, realizada 210 dias após a segunda aplicação dos herbicidas.This paper reports on two years field trials carried out in Araras, SP, Brazil, on coffee tress with twenty

POLITICA DE RECRUTARE ȘI SELECȚIE A PERSONALULUI ACADEMIC ÎN ÎNVĂȚĂMÂNTUL SUPERIOR DIN RSS MOLDOVENEASCĂ. 1944-1950

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Liliana ROTARU

2017-08-01

Full Text Available Resursa umană este capitalul strategic al oricărei instituții de învățământ superior și o politică judicioasă de personal, în general, dar mai ales de recrutare și selecție a cadrelor didactico-științifice. Ea face posibilă realizarea misiunii învăță­mân­tului superior, implicit, prin cei care îl promovează. Cercetarea politicii de personal în școlile superioare din RSS Moldovenească în perioada de refacere a învățământului superior de după cel de-al Doilea Război Mondial a scos în evidență că aceasta era subordonată politicii naționale a statului sovietic, care presupunea formarea „omului nou” și integrarea acestuia în identitatea supraetnică numită „popor sovietic” – deznaționalizat, îndoctrinat cu ideologie marxist-leninistă, rusificat și rusianizat, care să aibă o patrie socialistă comună – Uniunea Sovietică și un scop comun – const­ruirea comunismului. Toate instrumentele și metodele de recrutare și selectare a personalului academic pentru insti­tuțiile de învățământ din RSS Moldovenească erau subordonate necesității creării unui corp didactico-științific în mare parte vorbitor și purtător de limbă și cultură rusă, puternic ideologizat și loial statului sovietic și partidului comunist, și mai apoi de o anumită competență profesională, toate acestea camuflate sub pregnanta idee de promovare a „elemen­tului autohton moldovenesc”.THE POLICY OF RECRUITMENT AND SELECTION OF ACADEMIC STAFF IN HIGHER EDUCATION OF MSSR. 1944-1950The human resource is the strategic capital of any higher education institutions and, in general, a judicious staff policy, but especially – a good policy of recruitment and selection of didactic and scientific staff makes possible to realize the higher education mission and, by default – the goals of those who are promoting it. The research of staff policy in high schools of MSSR during the higher education

NECESITATEA FORMĂRII COMPETENŢELOR INOVAŢIONALE LA MANAGERII DIN ÎNVĂŢĂMÂNTUL PREUNIVERSITAR

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Victoria COJOCARU

2016-12-01

Full Text Available Articolul conţine o analiză a entităţilor de bază ale procesului inovaţional în învăţământ, aici înscriindu-se definirea inovaţiei în raport cu inovarea, invenţia, novaţia, reforma etc.; sintetizarea caracteristicilor inovaţiei ca înnoire şi îmbu­nătăţire, ca schimbare în soluţionarea problemelor, orientare a noilor idei spre produse utile, ca factor al dezvoltării învă­ţământului şi instrument al concurenţei.Competenţa este abordată ca o stare care conferă randament, precizie şi siguranţă în rezolvarea sarcinilor; este un model comportamental care exprimă ceea ce poate fi etc. A fost dată o definiţie a competenţei inovaţionale, ca o com­po­nentă a competenţei profesionale, adică manageriale, şi ca un aspect de bază al acestei competenţe.În articol este descrisă Tehnologia inovaţională managerială elaborată în baza schemei tehnologiei inovaţiilor, cri­te­riilor de eficacitate a monitorizării activităţii inovaţionale, tehnologiei Web 2.0, ca mecanism de sprijin.Pornind de la sinteza analitică a domeniilor analizate pe parcurs, în baza elucidării circumstanţelor necesităţii imple­mentării inovaţiilor, a specificului activităţii managerial-inovaţionale, a caracteristicilor personalităţii inovatoare şi prin modelizarea ideilor expuse anterior este argumentată activitatea managerial-inovaţională a managerilor, care este o activitate a subiectului de creare, elaborare, însuşire a inovaţiilor în conţinutul funcţiilor manageriale, utilizarea metode­lor, structurii organizaţionale, implementării în practică a obiectivelor propuse în scop de eficientizare a monitori­zării şi dezvoltării instituţiei.Cuvinte-cheie: inovare, inovaţie, activitate managerial-inovaţională, tehnologie inovaţională managerială şi com­petenţă inovaţională. MANAGERS NEED INNOVATIVE SKILLS TRAINING IN SECONDARY EDUCATIONThe article contains an analysis of the basic

EPISTEMOLOGIA EDUCAŢIEI – O ABORDARE INTERDISCIPLINARĂ

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Florentina Olimpia AVRAM

2015-12-01

Full Text Available Epistemologia educaţiei, ca parte, deopotrivă, a disciplinei filosofiei educaţiei (prin urmare, aparţinând domeniului filosofiei, poate să se constituie şi ca disciplină în cadrul ştiinţelor educaţiei. Un parcurs similar l-au avut şi alte discip­line considerate a fi „de graniţă” şi având o abordare interdisciplinară, care fac parte în acelaşi timp din două discipline distincte, cum ar fi, de exemplu, sociologia educaţiei, care este, deopotrivă, o ramură a sociologiei dar şi o subdisciplină a ştiinţelor educaţiei. Prin urmare, în contextul actual, de hibridare metodologică, conceptuală şi disciplinară, rolul epistemologiei educaţiei este acela de a întemeia cunoaşterea din domeniul ştiinţelor educaţiei; ea are, de asemenea, un rol de fundamentare normativă, evidenţiind rolul şi importanţa enunţurilor celor mai generale ale ştiinţei – axiome, legi, principii şi reguli, în întemeierea critică a cunoaşterii şi legătura acestor legităţi cu praxis-ul educaţional. De asemenea, aspecte legate de sursele cunoaşterii în educaţie, de tipurile şi modalităţile de cunoaştere specifice acestor ştiinţe, de analiza critică a conceptelor, principiilor, legităţilor educaţiei, constituie un demers epistemologic în câmpul educaţiei, care are scop de clarificare, de elucidare şi întemeiere a cunoaşterii.EPISTEMOLOGY OF EDUCATION – AN INTERDISCIPLINARY APPROACHFrom an epistemological perspective the scientific research in the area of education sciences has some specific characte­ristics we would like to emphasize in this article, in a synthetic approach. One of the purposes considered is to briefly present some of the most recurrent forms of knowledge in the field of education, namely: reflexive, material, taxonomic, experimental and statistical knowledge. We will emphasise the specificity of each approach and we will insist on the forms encountered in the education sciences unlike

UTILIZAREA TEHNOLOGIILOR INFORMAŢIONALE ŞI COMUNICAŢIONALE LA ORELE DE ISTORIE

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Natalia ŢURCANU

2017-07-01

Full Text Available Comunicarea face referire la integrarea mijloacelor, tehnologiilor informaţionale şi comunicaţionale (TIC în cadrul procesului de formare a competenţelor specifice la istorie, ca practică de succes în activitatea mea ca profesor de istorie şi educaţie civică. Drept argument pentru această preocupare este Recomandarea Consiliului Europei cu privire la pre­darea istoriei în secolul XXI, despre creşterea accesului tinerilor la tehnologiile informaţionale şi comuni­ca­ţionale atât la şcoală, cât şi în afara orelor de curs, despre necesitatea formării unui individ competitiv în societatea informaţională. În acest scop, pentru desfăşurarea orelor de istorie, profesorul dispune de mijloace TIC, cu ajutorul cărora realizează şi valorifică o bancă informţională ce conţine resurse didactice integrate în cadrul situaţiilor didactice şi ele­mentelor de conţinut disciplinar.S-a constatat, în urma unor evaluări şi sondaje, că utilizarea materialelor multimedia la ora de istorie a dus la obţine­rea unor câştiguri educaţionale: sunt consolidate abilităţile de cercetare şi capacităţile intelectuale, sporesc cunoştinţele şi abilităţile în utilizarea tehnologiei informaţiei, creşte interesul şi angajarea elevilor în procesul educaţional.Se menţionează existenţa unor limite ale posibilităţilor de utilizare TIC ce nu pot fi depăşite decât prin menţinerea unui rol important al profesorului în achiziţia, prelucrarea şi utilizarea informaţiilor, în acţiunea de formare a deprinde­rilor şi abilităţilor practice. De aceea, interesul acordat dezvoltării competenţei tehnologice depăşeşte etapa instruirii iniţiale în profesie şi se inserează pe parcursul întregii cariere didactice, necesitând o redefinire continuă a obiectivelor formării.THE INTEGRATION OF THE INFORMATIONAL AND COMMUNICATION TECHNOLOGIES DURING THE HISTORY LESSONSThe Communication that Natalia �

SYNERGISTIC EFFECTS OF ETHANOL MEDICINAL PLANT EXTRACTS WITH ERYTHROMYCIN AGAINST SKIN STRAINS OF STAPHYLOCOCCI WITH INDUCIBLE PHENOTYPE OF MLS-RESISTANCE

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Yurchyshyn O.I.

2017-10-01

decreased in 32-64 times and Geranium pratense L. rhizomes extract antimicrobial concentration was decreased in 64-256 times. Ethanol extracts of Betula verrucosa L. buds (average FICI 0.473±0.20, Arctostaphylos uva-ursi (L. Spreng. leaves (average FICI 0.143±0.18 and Tamarix ramosissima Ledeb. leaves (average FICI 0.189±0.29 showed synergic action with erythromycin against 71.4-85.7% tested strains. Ethanol extracts of Sanguisorba officinalis L. roots showed non-interactive action with antibiotic against 42.8% isolates of staphylococci. Additive interaction with erythromycin for this extract was observed against 28.6% and synergic action against 28.6% strains (average FICI 0.812±0.52. Biota orientalis (L. Endl. (Platycladus orientalis (L. Franco fruits extract and Cotinus coggygria Scop. (Rhus cotinus R. leaves extract exhibited non-interactive action with antibiotic against all tested strains (average FICI 2.0±0.0. Experimental data indicate that combination of plant extracts with macrolides in therapeutic regimens against MLS-resistant staphylococci is promising, particularly for the treatment of pyoderma. The introduction of combined chemotherapy in clinical practice can actually help to solve two problems of modern medicine - slow the process of microorganisms (such as staphylococcus resistance to antibiotics acquiring and improve treatment of infections caused by resistant strains. Detection of bacteria antibiotic resistance modifiers in various plants stimulates to their intensive phytochemical study for isolation and identification of the active components. It will help to investigate the mechanisms of synergy on the molecular level. Conclusion. BAC of medicinal and aromatic plants potentiate antimicrobial activity of macrolides against skin isolates of staphylococci with inducible MLS-resistance. Alnus incana L. fruits ethanolic extract demonstrates the best direct antimicrobial activity and in combination with ERY synergistically inhibits the growth of S

Cultural and wild plant species as bio indicators and phyto-remedies of PHC contaminated soils in Russia

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Breus, I.; Larionova, N.; Semenova, E.; Breus, V.

2005-01-01

of kerosene and 1- methyl-naphthalene-tri-decane mixture on plant seeds connected with the disturbance of water-air soil regime, but also the direct toxic one caused by penetration of 1-methyl-naphthalene into maize seeds (dry and swell). At the second stage plant roots and seedlings growth on soil contaminated with kerosene was studied. Hereby it was established that at low PHC-concentrations in soil (even at 1% of kerosene) the parameters of initial plant growth (especially root length and biomass) are more sensitive. Therefore they are more informative as bio-indication parameters and can be used for bio-indication at the levels of soil contamination by kerosene less than 5%. At the final stage for some cultural species the root and over-ground biomass and also the phyto-remediation effect in leached chernozem contaminated with kerosene were investigated. Here it must be noted that generally we have not found the overlap of plant tolerance to soil PHC-contamination (estimated on both seed germination and biomass accumulation) with their phyto-remediation capacity. From all studied plants the most clear phyto-remediation effect was established for sainfoin at 1 - 5% of kerosene in soil

Cultural and wild plant species as bio indicators and phyto-remedies of PHC contaminated soils in Russia

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Breus, I.; Larionova, N.; Semenova, E.; Breus, V. [Kazan State Univ., Dept. of Geography and Geoecology (Russian Federation)

2005-07-01

of kerosene and 1- methyl-naphthalene-tri-decane mixture on plant seeds connected with the disturbance of water-air soil regime, but also the direct toxic one caused by penetration of 1-methyl-naphthalene into maize seeds (dry and swell). At the second stage plant roots and seedlings growth on soil contaminated with kerosene was studied. Hereby it was established that at low PHC-concentrations in soil (even at 1% of kerosene) the parameters of initial plant growth (especially root length and biomass) are more sensitive. Therefore they are more informative as bio-indication parameters and can be used for bio-indication at the levels of soil contamination by kerosene less than 5%. At the final stage for some cultural species the root and over-ground biomass and also the phyto-remediation effect in leached chernozem contaminated with kerosene were investigated. Here it must be noted that generally we have not found the overlap of plant tolerance to soil PHC-contamination (estimated on both seed germination and biomass accumulation) with their phyto-remediation capacity. From all studied plants the most clear phyto-remediation effect was established for sainfoin at 1 - 5% of kerosene in soil.

COMITETELE ŞCOLARE DIN BASARABIA INTERBELICĂ: CONTRIBUŢII LA DEZVOLTAREA ÎNVĂŢĂMÂNTULUI

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Gheorghe PALADE

2015-11-01

Full Text Available În acest studiu sunt analizate aspecte privind activitatea comitetelor şcolare înfiinţate în România din iniţiativa mini-strului Instrucţiunii C.Angelescu prin Decretul-lege din iulie 1919. Obiectivul lor principal era mobilizarea eforturilor şi mijloacelor populaţiei din mediul rural şi urban la construcţia localurilor de şcoli. Drept urmare a activităţii acestora şi a susţinerii financiare din partea statului extinderea şcolară a cunoscut proporţii sporite, numărul de şcoli primare în Basa-rabia dublându-se, de la 1383 în anul 1918 la 2628 în 1940. Pe lângă construirea şi întreţinerea şcolilor, comitetele şcolare au avut în responsabilitatea lor asigurarea şcolilor cu material didactic şi cărţi pentru instruirea elevilor, fapt confirmat de numeroase demersuri şi solicitări adresate Casei Şcoalelor în acest scop. O importanţă deosebită au avut acţiunile comitetelor şcolare conjugate cu cele ale corpului didactic pentru realizarea obligativităţii învăţământului primar şi asigurarea frecvenţei şcolare. În Basarabia, unde, drept urmare a regimului ţarist, domina analfabetismul şi ignoranţa populaţiei, acest proces a fost mai dificil decât în celelalte provincii româneşti. Comitetele şcolare aveau în competenţa lor şi aplicarea amenzilor pentru absentarea elevilor de la şcoală. Documentele analizate demonstrează că în multe cazuri acestea erau nevoite să reducă amenzile şcolare din cauza situaţiei materiale precare a populaţiei rurale, care se înregistra mai ales în anii secetoşi. Acţiunile întreprinse de comitetele şcolare au fost mai eficiente în perioada guvernărilor liberale din anii 1922-1926 şi 1934-1937, acestea fiind încurajate energic de Ministerul Instrucţiunii Publice condus de C.Angelescu. Construcţiile şcolare erau propagate prin conferinţe publice, cinematograf, decernarea cu medalii a persoanelor cu merite deosebite. În aceşti ani cu

ВЛИЯНИЕ ВОЗЗРЕНИЙ НИККОЛО МAКИАВЕЛЛИ О ПРИРОДЕ ЧЕЛОВЕКА НА ТЕОРИЮ И МЕТОДОЛОГИЮ ИЗУЧЕНИЯ ЛИЧНОСТИ В ПСИХОЛОГИИ

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Ludmila ANŢIBOR

2017-03-01

natura umană au fost dezvoltate în teoria cultural-istorică a lui L.S. Vâgotsky despre dezvoltarea funcţiilor psihice superioare ale omului şi în abordarea activităţii subiectului, care justifică capacitatea lui la autodeterminare (S.L. Rubinstein, A.N. Leontiev, A.V. Brushlinskii. S-a constatat că stu­diul machiavelismului în psihologie se bazează pe noţiunea de activitate, perceput ca proces contradictoriu, şi pe ideea autonomiei relative a unităţilor activităţii – acţiuni şi operaţii (activitate obiectuală, motivaţie, scop şi condiţii (activi­tatea internă.

Mediterranean shrub vegetation: soil protection vs. water availability

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García Estringana, Pablo; Nieves Alonso-Blázquez, M.; Alegre, Alegre; Cerdà, Artemi

2014-05-01

Soil Erosion and Land Degradation are closely related to the changes in the vegetation cover (Zhao et al., 2013). Although other factors such as rainfall intensiy or slope (Ziadat and Taimeh, 2013) the plant covers is the main factor that controls the soil erosion (Haregeweyn, 2013). Plant cover is the main factor of soil erosion processes as the vegetation control the infiltration and runoff generation (Cerdà, 1998a; Kargar Chigani et al., 2012). Vegetation cover acts in a complex way in influencing on the one hand on runoff and soil loss and on the other hand on the amount and the way that rainfall reaches the soil surface. In arid and semiarid regions, where erosion is one of the main degradation processes and water is a scant resource, a minimum percentage of vegetation coverage is necessary to protect the soil from erosion, but without compromising the availability of water (Belmonte Serrato and Romero Diaz, 1998). This is mainly controlled by the vegetation distribution (Cerdà, 1997a; Cammeraat et al., 2010; Kakembo et al., 2012). Land abandonment is common in Mediterranean region under extensive land use (Cerdà, 1997b; García-Ruiz, 2010). Abandoned lands typically have a rolling landscape with steep slopes, and are dominated by herbaceous communities that grow on pasture land interspersed by shrubs. Land abandonment use to trigger an increase in soil erosion, but the vegetation recovery reduces the impact of the vegetation. The goal of this work is to assess the effects of different Mediterranean shrub species (Dorycnium pentaphyllum Scop., Medicago strasseri, Colutea arborescens L., Retama sphaerocarpa, L., Pistacia Lentiscus L. and Quercus coccifera L.) on soil protection (runoff and soil losses) and on rainfall reaching soil surface (rainfall partitioning fluxes). To characterize the effects of shrub vegetation and to evaluate their effects on soil protection, two field experiments were carried out. The presence of shrub vegetation reduced runoff by

Содержание форм азота в листьях древесных растений как составляющая мониторинга состояния дендрофлоры парков г. Днепропетровск

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Ольга ИВАНЧЕНКО

2016-12-01

Full Text Available This research has been conducted to evaluate the content of nitrogen forms in the leaves of woody plants in the parks located at different distances from sources of pollution in the urban area of Dnipropetrovsk. It has been found that in all except a few wood species such as Tilia plathyphyllos Scop. and Biota orientalis L. the content of total nitrogen does not differ from the control indices. In the city parks (e.g., in the park named after Yu. Gagarin and Sevastopol park, where the plants are exposed to low-risk man-induced impacts, the content of protein nitrogen in the leaves of the trees does not differ from the control indices, while this index is less in the plants in the other parks under study. Higher contents of non-protein nitrogen have been revealed in the leaves at the model sites in the parks named after L. Globa, T. G. Shevchenko, B. Khmelnitsky, M. Kalinin, and in Мolodezhny park; more over, that index varies more significantly as compared to the protein nitrogen content. It has been observed that the values of the protein to non-protein nitrogen ratio are less in the leaves of the trees in the parks than the control indices, except for the plants in the park named after Yu. Gagarin. This indicator can be used as a marker of the vigorous status of woody plants in the city parks of industrial urban areas. Реферат. Изучено содержание форм азота в листьях древесных растений парков Днепропетровска, расположенных на разном удалении от источников загрязнения. Установлено, что содержание общего азота не отличается от контрольных показателей за некоторыми исключениями у липы широколистной и биоты восточной. В городских парках, растения которые �