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Sample records for three-dimensional culture model

  1. Engineered three-dimensional multicellular culture model to ...

    Science.gov (United States)

    Tissue fusion during early mammalian development requires crosstalk between multiple cell types. For example, paracrine signaling between palatal epithelial cells and palatal mesenchyme mediates the fusion of opposing palatal shelves during embryonic development. Fusion events in developmental processes including heart development, neural tube closure, and palatal fusion are dependent on epithelial-mesenchymal interactions (EMIs) and specific signaling pathways that have been elucidated largely using gene knockout mouse models. A broad analysis of literature using ToxRefDB identified 63 ToxCast chemicals associated with cleft palate in animal models. However, the influence of these and other putative teratogens on human palatal fusion has not been examined in depth due to the lack of in vitro models incorporating EMIs between human cell types. We sought to engineer the stratified mesenchymal and epithelial structure of the developing palate in vitro using spheroid culture of human Wharton’s Jelly mesenchymal stem cells (hMSC). hMSC spheroids exhibited uniform size over time (175 ± 21 µm mean diameter) that was proportional to starting cell density. Further, hMSCs in spheroid culture exhibited increased alkaline phosphatase activity and increased expression of bglap and runx2 after 7 days of culture in osteo-induction medium, which suggests that spheroid culture together with osteo-induction medium supports osteogenic differentiation. We developed a novel pro

  2. Organotypic three-dimensional culture model of mesenchymal ...

    Science.gov (United States)

    Tissue fusion during early mammalian development requires coordination of multiple cell types, the extracellular matrix, and complex signaling pathways. Fusion events during processes including heart development, neural tube closure, and palatal fusion are dependent on signaling pathways elucidated using gene knockout mouse models. A broad analysis of literature, ToxRefDB, and ToxCast identified 63 chemicals that are related to cleft palate. However,the influence of these putative teratogens on human palatal fusion has not been studied due to the lack of in vitro models. We sought to engineer the stratified mesenchymal and epithelial structure of the developing palate in vitro via organotypic culture of human mesenchymal stem cell (hMSC) spheroids coated with a single layer of human primary epidermalkeratinocytes (hPEKp). hMSC spheroids exhibited uniform size over time (175 ± 21 µm mean diameter) proportional to starting cell density. Further, we developed a novel procedure to coat hMSC spheroids homogeneously with a single layer of hPEKp cells using a seeding ratio of 0.1-0.2 hPEKp per hMSC, and hMSC/hPEKp spheroids expressed mesenchymal markers (vim+, C044+, CD105+, CD34-) and epithelial markers (krt17+, itga6+) via qRT-PCR. Analysis of adverse outcome pathways related to palate fusion points to an EGF/TGFj33 switch that could be a target for cleft palate teratogens, and both egf and egfr were expressed by hMSC/hPEKp spheres. Finally, hMSCs and hPE

  3. Effect of a dienogest for an experimental three-dimensional endometrial culture model for endometriosis.

    Science.gov (United States)

    Prechapanich, Japarath; Kajihara, Takeshi; Fujita, Keiko; Sato, Kazuko; Uchino, Satomi; Tanaka, Kayoko; Matsumoto, Sachiko; Akita, Masumi; Nagashima, Masabumi; Brosens, Jan J; Ishihara, Osamu

    2014-12-01

    The pathogenesis of endometriosis remains poorly understood at least in part because early stages of the disease process are difficult to investigate. Previous studies have proposed a three-dimensional fibrin matrix culture model to study human endometriosis. We examined the ultrastructural features of the endometriosis in this model and assessed the effect of a progestin on endometrial outgrowth and apoptosis in this culture system. Endometrial explants were placed in three-dimensional fibrin matrix culture and treated with and without various concentrations of the progestin dienogest. By the second week, endometrial gland-like formation was established in outgrowths both attached to and at a distance from the explants. These cells formed a combination of clumps and tubular monolayers surrounding a central cavity. Electron microscopy demonstrated that these cells are polarized with microvilli on the apical surface, desmosome-like structures, and basement membrane; features consistent with glandular epithelial cells. Outgrowth of endometrial stromal cells and glandular formation was impaired in response to dienogest in a dose-dependent manner. Our study shows that the human endometrial explants cultured in three-dimensional fibrin matrix establish outgrowths that ultrastructurally resemble ectopic endometrial implants. This model may provide insight into the cellular processes leading to endometriosis formation and enables screening of therapeutic compounds.

  4. Challenges of culturing human norovirus in three-dimensional organoid intestinal cell culture models.

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    Efstathia Papafragkou

    Full Text Available Human noroviruses are the most common cause of acute gastroenteritis worldwide. Recently, cell culture systems have been described using either human embryonic intestinal epithelial cells (Int-407 or human epithelial colorectal adenocarcinoma cells (Caco-2 growing on collagen-I porous micro carrier beads in a rotating bioreactor under conditions of physiological fluid shear. Here, we describe the efforts from two independent laboratories to implement this three dimensional (3D cell culture system for the replication of norovirus. Int-407 and Caco-2 were grown in a rotating bioreactor for up to 28 days. Prior to infection, cells were screened for the presence of microvilli by electron microscopy and stained for junction proteins (zonula occludens-1, claudin-1, and β-catenin. Differentiated 3D cells were transferred to 24-well plates and infected with bacteria-free filtrates of various norovirus genotypes (GI.1, GI.3, GI.8, GII.2, GII.4, GII.7, and GII.8. At 12 h, 24 h, and 48 h post inoculation, viral RNA from both cells and supernatants were collected and analyzed for norovirus RNA by real-time reverse transcription PCR. Despite observations of high expression of junction proteins and microvilli development in stained thin sections, our data suggest no significant increase in viral titer based on norovirus RNA copy number during the first 48 h after inoculation for the different samples and virus culture conditions tested. Our combined efforts demonstrate that 3D cell culture models using Int-407 or Caco-2 cells do not support norovirus replication and highlight the complexity and difficulty of developing a reproducible in vitro cell culture system for human norovirus.

  5. Culture of three-dimensional tissue model and its application in bystander-effect research

    International Nuclear Information System (INIS)

    Wu Ruqun; Xu An; Wu Lijun; Hu Burong

    2012-01-01

    Compared with the cultured monolayer (2D) cells, three-dimensional (3D) tissue could be more similar to the environment in vivo including the physical support, chemical factors, cell-cell and cell-matrix interaction and so on. With the development of three-dimensional cell culture techniques (TDCC), 3D tissue is widely used in the areas of bystander effect research. This review focuses on introducing the TDCC method and its application in bystander-effect research. First, the development process of 3D tissue culture method was introduced. Secondly, the induction of radiation induced bystander effects both in 2D cell and 3D tissue and its mechanisms were reviewed. Finally, because heavy ion (carbon ion beam) has been developed as a useful tool to cure solid cancer, and the 3D tissue model is an ideal material to study the damages on body after being irradiated and to understand the underlying mechanisms, future study about heavy ion radiation inducing bystander effect in 3D tissue was discussed. (authors)

  6. Cell-free DNA in a three-dimensional spheroid cell culture model

    DEFF Research Database (Denmark)

    Aucamp, Janine; Calitz, Carlemi; Bronkhorst, Abel J.

    2017-01-01

    state, may be of significant benefit for cfDNA research. Methods CfDNA was isolated from the growth medium of C3A spheroid cultures in rotating bioreactors during both normal growth and treatment with acetaminophen. Spheroid growth was monitored via planimetry, lactate dehydrogenase activity and glucose...... environment. Combining 3D culture and cfDNA research could, therefore, optimize both research fields.......Background Investigating the biological functions of cell-free DNA (cfDNA) is limited by the interference of vast numbers of putative sources and causes of DNA release into circulation. Utilization of three-dimensional (3D) spheroid cell cultures, models with characteristics closer to the in vivo...

  7. Three-dimensional cell culture model utilization in cancer stem cell research.

    Science.gov (United States)

    Bielecka, Zofia F; Maliszewska-Olejniczak, Kamila; Safir, Ilan J; Szczylik, Cezary; Czarnecka, Anna M

    2017-08-01

    Three-dimensional (3D) cell culture models are becoming increasingly popular in contemporary cancer research and drug resistance studies. Recently, scientists have begun incorporating cancer stem cells (CSCs) into 3D models and modifying culture components in order to mimic in vivo conditions better. Currently, the global cell culture market is primarily focused on either 3D cancer cell cultures or stem cell cultures, with less focus on CSCs. This is evident in the low product availability officially indicated for 3D CSC model research. This review discusses the currently available commercial products for CSC 3D culture model research. Additionally, we discuss different culture media and components that result in higher levels of stem cell subpopulations while better recreating the tumor microenvironment. In summary, although progress has been made applying 3D technology to CSC research, this technology could be further utilized and a greater number of 3D kits dedicated specifically to CSCs should be implemented. © 2016 The Authors. Biological Reviews published by John Wiley & Sons Ltd on behalf of Cambridge Philosophical Society.

  8. Three-dimensional hydrogel cultures for modeling changes in tissue impedance around microfabricated neural probes

    Science.gov (United States)

    Frampton, J. P.; Hynd, M. R.; Williams, J. C.; Shuler, M. L.; Shain, W.

    2007-12-01

    One limitation to the use of neuroprosthestic devices for chronic application, in the treatment of disease, is the reactive cell responses that occur surrounding the device after insertion. These cell and tissue responses result in increases in device impedance and failure of the device to interact with target populations of neurons. However, few tools are available to assess which components of the reactive response contribute most to changes in tissue impedance. An in vitro culture system has been developed that is capable of assessing individual components of the reactive response. The system utilizes alginate cell encapsulation to construct three-dimensional architectures that approach the cell densities found in rat cortex. The system was constructed around neuroNexus acute probes with on-board circuitry capable of monitoring the electrical properties of the surrounding tissue. This study demonstrates the utility of the system by demonstrating that differences in cell density within the three-dimensional alginate constructs result in differences in resistance and capacitance as measured by electrochemical impedance spectroscopy. We propose that this system can be used to model components of the reactive responses in brain tissue, and that the measurements recorded in vitro are comparable to measurements recorded in vivo.

  9. Segmentation of Three Dimensional Cell Culture Models from aSingle Focal Plane

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    Chang, Hang; Parvin, Bahram

    2006-11-01

    Three dimensional cell culture models offer new opportunities for development of computational techniques for segmentation and localization. These assays have a unique signature of a clump of cells that correspond to a functioning colony. Often the nuclear compartment is labeled and then imaged with fluorescent microscopy to provide context for protein localization. These colonies are first delineated from background using the level set method. Within each colony, nuclear regions are then bounded by their center of mass through radial voting, and a local neighborhood for each nucleus is established through Voronoi tessellation. Finally, the level set method is applied again within each Voronoi region to delineate the nuclear compartment. The paper concludes with the application of the proposed method to a dataset of experimental data demonstrating a stable solution when iterative radial voting and level set methods are used synergistically.

  10. Three-dimensional hydrogel cell culture systems for modeling neural tissue

    Science.gov (United States)

    Frampton, John

    Two-dimensional (2-D) neural cell culture systems have served as physiological models for understanding the cellular and molecular events that underlie responses to physical and chemical stimuli, control sensory and motor function, and lead to the development of neurological diseases. However, the development of three-dimensional (3-D) cell culture systems will be essential for the advancement of experimental research in a variety of fields including tissue engineering, chemical transport and delivery, cell growth, and cell-cell communication. In 3-D cell culture, cells are provided with an environment similar to tissue, in which they are surrounded on all sides by other cells, structural molecules and adhesion ligands. Cells grown in 3-D culture systems display morphologies and functions more similar to those observed in vivo, and can be cultured in such a way as to recapitulate the structural organization and biological properties of tissue. This thesis describes a hydrogel-based culture system, capable of supporting the growth and function of several neural cell types in 3-D. Alginate hydrogels were characterized in terms of their biomechanical and biochemical properties and were functionalized by covalent attachment of whole proteins and peptide epitopes. Methods were developed for rapid cross-linking of alginate hydrogels, thus permitting the incorporation of cells into 3-D scaffolds without adversely affecting cell viability or function. A variety of neural cell types were tested including astrocytes, microglia, and neurons. Cells remained viable and functional for longer than two weeks in culture and displayed process outgrowth in 3-D. Cell constructs were created that varied in cell density, type and organization, providing experimental flexibility for studying cell interactions and behavior. In one set of experiments, 3-D glial-endothelial cell co-cultures were used to model blood-brain barrier (BBB) structure and function. This co-culture system was

  11. Low Doses of Celecoxib Stimulate Human Endometrium Growth in A Three-Dimensional Culture Model

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    Mohammad Rasool Khazaei

    2013-01-01

    Full Text Available Background: The endometrium plays a pivotal role in implantation and pregnancy. CyclooxygenaseII (COX-2 has an important function in biological processes such as cellproliferation and inflammation. Celecoxib is a selective inhibitor of COX-2 with numerouspharmacologic functions. The aim of present study is to investigate the effects ofcelecoxib on the human endometrium in a three-dimensional (3D culture model.Materials and Methods: In this experimental study, normal human endometria (n=10obtained from reproductive age women were cut into 1×1 mm sections. Endometrialexplants were placed between two layers of fibrin gel. To create the fibrin gel, we poureda thin layer of fibrinogen solution [3 mg/ml in medium 199 (M199] into each well of a24-well culture dish and added thrombin enzyme. Endometrial fragments were placed inthe center of each well and covered with a second layer of fibrinogen solution. M199 supplementedwith L-glutamine, fetal bovine serum (FBS, 5% and antibiotics were addedto each well. The media in each experimental well contained either1, 10 or 50 μM ofcelecoxib. At the end of the study, we calculated endometrial tissue growth changes byscoring methods and determined the percentage of angiogenesis. Data were analyzed bythe Kruskal-Wallis method. P<0.05 was considered significant.Results: The growth scores were as follows: control (1.37 ± 0.16, 1 μM (1.96 ± 0.28,10 μM (2.01 ± 0.25, and 50 μM (1.17 ± 0.14 celecoxib, all of which were significantlydifferent. The angiogenesis percentages were: 25.56 ± 6.72% (control, 31.98 ± 6.18% (1μM, 42.67 ± 7.27% (10 μM and 23.44 ± 4.03% (50 μM, which were not significantlydifferent from each other.

  12. Cytocompatibility of Biodentine using a three-dimensional cell culture model.

    Science.gov (United States)

    Silva, E J N L; Senna, P M; De-Deus, G; Zaia, A A

    2016-06-01

    To evaluate the cytotoxic effects of Biodentine, using a three-dimensional (3D) cell culture associated with an in situ root-end filling experimental model. White mineral trioxide aggregate (MTA) and zinc oxide cement were used as reference for comparison. IL-1α and TNF-α cytokine production were also evaluated. The root canals of 24 human maxillary incisor teeth were prepared using a single-file reciprocating technique. After root filling, a 3-mm root-end resection was performed and 3 mm of gutta-percha was removed from the canal. The teeth were randomly distributed to receive one of the following root-end filling materials: Biodentine, white MTA or zinc oxide cement (positive control group). In the negative control group, the root canal was not retro-filled. The cytocompatibility of the materials was evaluated using the methyl-thiazol-diphenyl-tetrazolium (MTT) assay in an in situ root-end filling experimental model. Balb/c 3T3 fibroblasts, cultured in rat tail collagen type I 3D scaffold, were exposed to the root apex for 24 h, and cell viability was measured by means of reduction MTT salt. IL-1α and TNF-α production were analysed using enzyme-linked immunosorbent assay. One-way analysis of variance was performed and, when the F-ratios were significant, data were compared by Duncan's multiple-range test. The alpha-type error was set at 0.05. Biodentine and MTA groups had similar cell activity to the negative control group (P > 0.05), indicating low cytotoxicity for both materials. The stronger cytotoxicity effect was identified on the zinc oxide cement (P Biodentine and the negative control group were observed for TNF-α (P > 0.05); however, both MTA and Biodentine were associated with overproduction of IL-1α when compared to the control group (P Biodentine and MTA had similar cytocompatibility in a 3D cell culture model associated with an in situ root-end filling model. The methodology could be used as an alternative to assess the

  13. A three-dimensional cell culture model to study the mechano-biological behavior in periodontal ligament regeneration.

    NARCIS (Netherlands)

    Oortgiesen, D.A.W.; Yu, N.; Bronckers, A.L.; Yang, F.; Walboomers, X.F.; Jansen, J.A.

    2012-01-01

    Periodontitis is a disease affecting the supporting structures of the teeth, which can eventually result in tooth loss. A three-dimensional (3D) tissue culture model was developed that may serve to grow a 3D construct that not only transplants into defective periodontal sites, but also allows to

  14. A three-dimensional cell culture model to study the mechano-biological behavior in periodontal ligament regeneration

    NARCIS (Netherlands)

    Oortgiesen, D.A.W.; Yu, N.; Bronckers, A.L.J.J.; Yang, F.; Walboomers, X.F.; Jansen, J.A.

    2012-01-01

    Periodontitis is a disease affecting the supporting structures of the teeth, which can eventually result in tooth loss. A three-dimensional (3D) tissue culture model was developed that may serve to grow a 3D construct that not only transplants into defective periodontal sites, but also allows to

  15. Three-Dimensional Organotypic Co-Culture Model of Intestinal Epithelial Cells and Macrophages to Study "Salmonella Enterica" Colonization Patterns

    Science.gov (United States)

    Ott, Mark; Yang, J; Barilla, J.; Crabbe, A.; Sarker, S. F.; Liu, Y.

    2017-01-01

    Three-dimensional/3-D organotypic models of human intestinal epithelium mimic the differentiated form and function of parental tissues often not exhibited by 2-D monolayers and respond to Salmonella in ways that reflect in vivo infections. To further enhance the physiological relevance of 3-D models to more closely approximate in vivo intestinal microenvironments during infection, we developed and validated a novel 3-D intestinal co-culture model containing multiple epithelial cell types and phagocytic macrophages, and applied to study enteric infection by different Salmonella pathovars.

  16. Three-dimensional in vitro follicle growth: overview of culture models, biomaterials, design parameters and future directions.

    Science.gov (United States)

    Desai, Nina; Alex, Anastasia; AbdelHafez, Faten; Calabro, Anthony; Goldfarb, James; Fleischman, Aaron; Falcone, Tommaso

    2010-10-14

    In vitro ovarian follicle culture is a new frontier in assisted reproductive technology with tremendous potential, especially for fertility preservation. Folliculogenesis within the ovary is a complex process requiring interaction between somatic cell components and the oocyte. Conventional two-dimensional culture on tissue culture substrata impedes spherical growth and preservation of the spatial arrangements between oocyte and surrounding granulosa cells. Granulosa cell attachment and migration can leave the oocyte naked and unable to complete the maturation process. Recognition of the importance of spatial arrangements between cells has spurred research in to three-dimensional culture system. Such systems may be vital when dealing with human primordial follicles that may require as long as three months in culture. In the present work we review pertinent aspects of in vitro follicle maturation, with an emphasis on tissue-engineering solutions for maintaining the follicular unit during the culture interval. We focus primarily on presenting the various 3-dimensional culture systems that have been applied for in vitro maturation of follicle:oocyte complexes. We also try to present an overview of outcomes with various biomaterials and animal models and also the limitations of the existing systems.

  17. Airway branching morphogenesis in three dimensional culture

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    Gudjonsson Thorarinn

    2010-11-01

    Full Text Available Abstract Background Lungs develop from the fetal digestive tract where epithelium invades the vascular rich stroma in a process called branching morphogenesis. In organogenesis, endothelial cells have been shown to be important for morphogenesis and the maintenance of organ structure. The aim of this study was to recapitulate human lung morphogenesis in vitro by establishing a three dimensional (3D co-culture model where lung epithelial cells were cultured in endothelial-rich stroma. Methods We used a human bronchial epithelial cell line (VA10 recently developed in our laboratory. This cell line cell line maintains a predominant basal cell phenotype, expressing p63 and other basal markers such as cytokeratin-5 and -14. Here, we cultured VA10 with human umbilical vein endothelial cells (HUVECs, to mimic the close interaction between these cell types during lung development. Morphogenesis and differentiation was monitored by phase contrast microscopy, immunostainings and confocal imaging. Results We found that in co-culture with endothelial cells, the VA10 cells generated bronchioalveolar like structures, suggesting that lung epithelial branching is facilitated by the presence of endothelial cells. The VA10 derived epithelial structures display various complex patterns of branching and show partial alveolar type-II differentiation with pro-Surfactant-C expression. The epithelial origin of the branching VA10 colonies was confirmed by immunostaining. These bronchioalveolar-like structures were polarized with respect to integrin expression at the cell-matrix interface. The endothelial-induced branching was mediated by soluble factors. Furthermore, fibroblast growth factor receptor-2 (FGFR-2 and sprouty-2 were expressed at the growing tips of the branching structures and the branching was inhibited by the FGFR-small molecule inhibitor SU5402. Discussion In this study we show that a human lung epithelial cell line can be induced by endothelial cells to

  18. Establishment of a Novel Model for Anticancer Drug Resistance in Three-Dimensional Primary Culture of Tumor Microenvironment

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    Tatsuya Usui

    2016-01-01

    Full Text Available Tumor microenvironment has been implicated in tumor development and progression. As a three-dimensional tumor microenvironment model, air liquid interface (ALI organoid culture from oncogene transgenic mouse gastrointestinal tissues was recently produced. However, ALI organoid culture system from tissues of colorectal cancer patients has not been established. Here, we developed an ALI organoid model from normal and tumor colorectal tissues of human patients. Both organoids were successfully generated and showed cystic structures containing an epithelial layer and surrounding mesenchymal stromal cells. Structures of tumor organoids closely resembled primary tumor epithelium. Expression of an epithelial cell marker, E-cadherin, a goblet cell marker, MUC2, and a fibroblast marker, vimentin, but not a myofibroblast marker, α-smooth muscle actin (SMA, was observed in normal organoids. Expression of E-cadherin, MUC2, vimentin, and α-SMA was observed in tumor organoids. Expression of a cancer stem cell marker, LGR5 in tumor organoids, was higher than that in primary tumor tissues. Tumor organoids were more resistant to toxicity of 5-fluorouracil and Irinotecan than colorectal cancer cell lines, SW480, SW620, and HCT116. These findings indicate that ALI organoid culture from colorectal cancer patients may become a novel model that is useful for examining resistance to chemotherapy in tumor microenvironment.

  19. Three-Dimensional Rotating Wall Vessel-Derived Cell Culture Models for Studying Virus-Host Interactions

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    Jameson K. Gardner

    2016-11-01

    Full Text Available The key to better understanding complex virus-host interactions is the utilization of robust three-dimensional (3D human cell cultures that effectively recapitulate native tissue architecture and model the microenvironment. A lack of physiologically-relevant animal models for many viruses has limited the elucidation of factors that influence viral pathogenesis and of complex host immune mechanisms. Conventional monolayer cell cultures may support viral infection, but are unable to form the tissue structures and complex microenvironments that mimic host physiology and, therefore, limiting their translational utility. The rotating wall vessel (RWV bioreactor was designed by the National Aeronautics and Space Administration (NASA to model microgravity and was later found to more accurately reproduce features of human tissue in vivo. Cells grown in RWV bioreactors develop in a low fluid-shear environment, which enables cells to form complex 3D tissue-like aggregates. A wide variety of human tissues (from neuronal to vaginal tissue have been grown in RWV bioreactors and have been shown to support productive viral infection and physiological meaningful host responses. The in vivo-like characteristics and cellular features of the human 3D RWV-derived aggregates make them ideal model systems to effectively recapitulate pathophysiology and host responses necessary to conduct rigorous basic science, preclinical and translational studies.

  20. A Three-Dimensional Cell Culture Model to Study the Mechano-Biological Behavior in Periodontal Ligament Regeneration

    Science.gov (United States)

    Oortgiesen, Daniel A.W.; Yu, Na; Bronckers, Antonius L.J.J.; Yang, Fang; Walboomers, X. Frank

    2012-01-01

    Periodontitis is a disease affecting the supporting structures of the teeth, which can eventually result in tooth loss. A three-dimensional (3D) tissue culture model was developed that may serve to grow a 3D construct that not only transplants into defective periodontal sites, but also allows to examine the effect of mechanical load in vitro. In the current in vitro study, green fluorescent protein labeled periodontal ligament (PDL) cells form rat incisors were embedded in a 3D matrix and exposed to mechanical loading alone, to a chemical stimulus (Emdogain; enamel matrix derivative [EMD]) alone, or a combination of both. Loading consisted of unilateral stretching (8%, 1 Hz) and was applied for 1, 3, or 5 days. Results showed that PDL cells were distributed and randomly oriented within the artificial PDL space in static culture. On mechanical loading, the cells showed higher cell numbers. Moreover, cells realigned perpendicular to the stretching force depending on time and position, with great analogy to natural PDL tissue. EMD application gave a significant effect on growth and upregulated bone sialoprotein (BSP) and collagen type-I (Col-I), whereas Runx-2 was downregulated. This implies that PDL cells under loading might tend to act similar to bone-like cells (BSP and Col-I) but at the same time, react tendon like (Runx-2). The combination of chemical and mechanical stimulation seems possible, but does not show synergistic effects. In this study, a new model was successfully introduced in the field of PDL-related regenerative research. Besides validating the 3D model to mimic an authentic PDL space, it also provided a useful and well-controlled approach to study cell response to mechanical loading and other stimuli. PMID:21913838

  1. Characterization of human lung cancer-associated fibroblasts in three-dimensional in vitro co-culture model

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    Horie, Masafumi [Department of Respiratory Medicine, Graduate School of Medicine, University of Tokyo (Japan); Saito, Akira, E-mail: asaitou-tky@umin.ac.jp [Department of Respiratory Medicine, Graduate School of Medicine, University of Tokyo (Japan); Mikami, Yu [Department of Respiratory Medicine, Graduate School of Medicine, University of Tokyo (Japan); Ohshima, Mitsuhiro [Department of Biochemistry, Ohu University School of Pharmaceutical Sciences (Japan); Morishita, Yasuyuki [Department of Molecular Pathology, Graduate School of Medicine, University of Tokyo (Japan); Nakajima, Jun [Department of Thoracic Surgery, Graduate School of Medicine, University of Tokyo (Japan); Kohyama, Tadashi; Nagase, Takahide [Department of Respiratory Medicine, Graduate School of Medicine, University of Tokyo (Japan)

    2012-06-22

    Highlights: Black-Right-Pointing-Pointer We established three patient-paired sets of CAFs and NFs. Black-Right-Pointing-Pointer CAFs and NFs were analyzed using three-dimensional co-culture experiments. Black-Right-Pointing-Pointer CAFs clearly enhanced collagen gel contraction. Black-Right-Pointing-Pointer CAFs showed higher {alpha}-SMA expression than NFs. Black-Right-Pointing-Pointer CAFs were implicated in invasion and differentiation of lung cancer cells. -- Abstract: Lung cancer is the most common cause of cancer-related death worldwide. Stromal cancer-associated fibroblasts (CAFs) play crucial roles in carcinogenesis, proliferation, invasion, and metastasis of non-small cell lung carcinoma, and targeting of CAFs could be a novel strategy for cancer treatment. However, the characteristics of human CAFs still remain to be better defined. In this study, we established patient-matched CAFs and normal fibroblasts (NFs), from tumoral and non-tumoral portions of resected lung tissue from lung cancer patients. CAFs showed higher {alpha}-smooth muscle actin ({alpha}-SMA) expression than NFs, and CAFs clearly enhanced collagen gel contraction. Furthermore, we employed three-dimensional co-culture assay with A549 lung cancer cells, where CAFs were more potent in inducing collagen gel contraction. Hematoxylin and eosin staining of co-cultured collagen gel revealed that CAFs had the potential to increase invasion of A549 cells compared to NFs. These observations provide evidence that lung CAFs have the tumor-promoting capacity distinct from NFs.

  2. Characterization of human lung cancer-associated fibroblasts in three-dimensional in vitro co-culture model

    International Nuclear Information System (INIS)

    Horie, Masafumi; Saito, Akira; Mikami, Yu; Ohshima, Mitsuhiro; Morishita, Yasuyuki; Nakajima, Jun; Kohyama, Tadashi; Nagase, Takahide

    2012-01-01

    Highlights: ► We established three patient-paired sets of CAFs and NFs. ► CAFs and NFs were analyzed using three-dimensional co-culture experiments. ► CAFs clearly enhanced collagen gel contraction. ► CAFs showed higher α-SMA expression than NFs. ► CAFs were implicated in invasion and differentiation of lung cancer cells. -- Abstract: Lung cancer is the most common cause of cancer-related death worldwide. Stromal cancer-associated fibroblasts (CAFs) play crucial roles in carcinogenesis, proliferation, invasion, and metastasis of non-small cell lung carcinoma, and targeting of CAFs could be a novel strategy for cancer treatment. However, the characteristics of human CAFs still remain to be better defined. In this study, we established patient-matched CAFs and normal fibroblasts (NFs), from tumoral and non-tumoral portions of resected lung tissue from lung cancer patients. CAFs showed higher α-smooth muscle actin (α-SMA) expression than NFs, and CAFs clearly enhanced collagen gel contraction. Furthermore, we employed three-dimensional co-culture assay with A549 lung cancer cells, where CAFs were more potent in inducing collagen gel contraction. Hematoxylin and eosin staining of co-cultured collagen gel revealed that CAFs had the potential to increase invasion of A549 cells compared to NFs. These observations provide evidence that lung CAFs have the tumor-promoting capacity distinct from NFs.

  3. Pathogen propagation in cultured three-dimensional tissue mass

    Science.gov (United States)

    Goodwin, Thomas J. (Inventor); Spaulding, Glenn F. (Inventor); Wolf, David A. (Inventor)

    2000-01-01

    A process for propagating a pathogen in a three-dimensional tissue mass cultured at microgravity conditions in a culture vessel containing culture media and a culture matrix is provided. The three-dimensional tissue mass is inoculated with a pathogen and pathogen replication in the cells of the tissue mass achieved.

  4. Development of three dimensional solid modeler

    International Nuclear Information System (INIS)

    Zahoor, R.M.A.

    1999-01-01

    The work presented in this thesis is aimed at developing a three dimensional solid modeler employing computer graphics techniques using C-Language. Primitives have been generated, by combination of plane surfaces, for various basic geometrical shapes including cylinder, cube and cone. Back face removal technique for hidden surface removal has also been incorporated. Various transformation techniques such as scaling, translation, and rotation have been included for the object animation. Three dimensional solid modeler has been created by the union of two primitives to demonstrate the capabilities of the developed program. (author)

  5. Three-Dimensional Ocean Noise Modeling

    Science.gov (United States)

    2015-03-01

    realistic and complex three-dimensional bathymetry. This is achieved by using a parabolic equation [PE) propagation model and the reciprocity principle...explain the horizontal noise directionality observed in the Tonga Trench [Barclay, 2014], which was found not to be a 3D effect, but rather due to...modeled noise arriving on the axis of the canyon has significantly perturbed zero-crossings when compared to the equivalent Nx2D result. Theoretical

  6. [The application progress of three-dimensional cell culture technology in ophthalmology].

    Science.gov (United States)

    Zhao, Yun; Zhang, Lei; Zhao, Hong

    2015-11-01

    Three-dimensional cell culture technology is a kind of technology that cultures the cells in a three-dimensional cultivation by using a kind of scaffold materials in vitro. Its advantage is that the vivo microenvironment simulating degrees of the three-dimensional culture technology is higher than that of the two-dimensional planar cell culture model, and the controllability is also higher than the animal experiment. In recent years, with the development of tissue engineering technology, a varietiy of the stent of biological materials also a fast development, which provided a favorable platform for three-dimensional cell culture technology. In ophthalmology, three-dimensional cell culture has been applied to the cornea, retina and the visual system development and other optic tumor researches. The objective of this paper is to making a review the application status of the three-dimensional cell culture technology in the basic research and clinical treatment in ophthalmology.

  7. Construction of three-dimensional liver tissue models by cell accumulation technique and maintaining their metabolic functions for long-term culture without medium change.

    Science.gov (United States)

    Matsuzawa, Atsushi; Matsusaki, Michiya; Akashi, Mitsuru

    2015-04-01

    Three-dimensional (3D) hepatocyte cultures have attracted much attention to obtain high biological functions of hepatocyte for pharmaceutical drug assessment. However, maintaining the high functions for over one month is still a key challenge although many approaches have been reported. In this study, we demonstrate for the first time simple and rapid construction of 3D-hepatocyte constructs by our cell accumulation technique and their high biological functions for one month, without any medium change. The human hepatocyte carcinoma (HepG2) cells were coated with ∼ 7 nm-sized extracellular matrix (ECM) films consisting of fibronectin (FN) and gelatin (G), and then incubated in cell culture insert to construct 3D-tissue constructs for 24 h. The thickness of obtained 3D-HepG2 constructs was easily controlled by altering seeding cell number and the maximum is over 100 μm. When a large volume of culture media was employed, the 3D-constructs showed higher mRNA expression of albumin and some cytochrome P450 (CYP) enzymes as compared to general two-dimensional (2D) culture. Surprisingly, their high cell viabilities (over 80%) and high mRNA expressions were successfully maintained without medium change for at least 27 days. These results demonstrate novel easy and rapid technique to construct 3D-human liver tissue models which can maintain their high functions and viability for 1 month without medium change. © 2014 Wiley Periodicals, Inc.

  8. Upregulated epidermal growth factor receptor expression following near-infrared irradiation simulating solar radiation in a three-dimensional reconstructed human corneal epithelial tissue culture model.

    Science.gov (United States)

    Tanaka, Yohei; Nakayama, Jun

    2016-01-01

    Humans are increasingly exposed to near-infrared (NIR) radiation from both natural (eg, solar) and artificial (eg, electrical appliances) sources. Although the biological effects of sun and ultraviolet (UV) exposure have been extensively investigated, the biological effect of NIR radiation is still unclear. We previously reported that NIR as well as UV induces photoaging and standard UV-blocking materials, such as sunglasses, do not sufficiently block NIR. The objective of this study was to investigate changes in gene expression in three-dimensional reconstructed corneal epithelial tissue culture exposed to broad-spectrum NIR irradiation to simulate solar NIR radiation that reaches human tissues. DNA microarray and quantitative real-time polymerase chain reaction analysis were used to assess gene expression levels in a three-dimensional reconstructed corneal epithelial model composed of normal human corneal epithelial cells exposed to water-filtered broad-spectrum NIR irradiation with a contact cooling (20°C). The water-filter allowed 1,000-1,800 nm wavelengths and excluded 1,400-1,500 nm wavelengths. A DNA microarray with >62,000 different probes showed 25 and 150 genes that were up- or downregulated by at least fourfold and twofold, respectively, after NIR irradiation. In particular, epidermal growth factor receptor (EGFR) was upregulated by 19.4-fold relative to control cells. Quantitative real-time polymerase chain reaction analysis revealed that two variants of EGFR in human corneal epithelial tissue were also significantly upregulated after five rounds of 10 J/cm(2) irradiation (Psolar energy reaching the Earth is in the NIR region, which cannot be adequately blocked by eyewear and thus can induce eye damage with intensive or long-term exposure, protection from both UV and NIR radiation may prevent changes in gene expression and in turn eye damage.

  9. Nonuniform multiview color texture mapping of image sequence and three-dimensional model for faded cultural relics with sift feature points

    Science.gov (United States)

    Li, Na; Gong, Xingyu; Li, Hongan; Jia, Pengtao

    2018-01-01

    For faded relics, such as Terracotta Army, the 2D-3D registration between an optical camera and point cloud model is an important part for color texture reconstruction and further applications. This paper proposes a nonuniform multiview color texture mapping for the image sequence and the three-dimensional (3D) model of point cloud collected by Handyscan3D. We first introduce nonuniform multiview calibration, including the explanation of its algorithm principle and the analysis of its advantages. We then establish transformation equations based on sift feature points for the multiview image sequence. At the same time, the selection of nonuniform multiview sift feature points is introduced in detail. Finally, the solving process of the collinear equations based on multiview perspective projection is given with three steps and the flowchart. In the experiment, this method is applied to the color reconstruction of the kneeling figurine, Tangsancai lady, and general figurine. These results demonstrate that the proposed method provides an effective support for the color reconstruction of the faded cultural relics and be able to improve the accuracy of 2D-3D registration between the image sequence and the point cloud model.

  10. 10-Hydroxy-2-Decenoic Acid in Royal Jelly Extract Induced Both Filaggrin and Amino Acid in a Cultured Human Three-Dimensional Epidermis Model

    Directory of Open Access Journals (Sweden)

    Lihao Gu

    2017-11-01

    Full Text Available Royal jelly (RJ is a natural product which the honeybee secretes as a special diet for a queen bee. It is one of the natural products in which various functionalities, such as antibacterial effects, immunomodulating properties, and estrogen-like action, were reported. We investigated the effect of the RJ extract on the moisturizing effect by topical application in humans. The stratum corneum moisture was increased significantly after four weeks by using the RJ extract lotion compared to placebo lotion. RJ extract contained a characteristic ingredient, 10-hydroxy-2-decenoic acid (10H2DA and 10-hydroxydecanoic acid (10HDAA, etc. However, the mechanism of stratum corneum moisture and its contributing ingredient have not yet been elucidated. We have investigated the effects of 10H2DA and 10HDAA on the free amino acids content in the stratum corneum using a cultured human three-dimensional epidermis model. Additionally, the effect of 10H2DA and 10HDAA on the amounts of filaggrin (FLG and aquaporin 3 (AQP3 were investigated at the mRNA level and by immunohistochemistry using a cultured human epidermis model. It was determined that 10H2DA increases the free amino acids in the stratum corneum of the cultured human epidermis model, and that it increased FLG on both the mRNA and protein levels. On the other hand, these actions are not observed by treatment of 10HDAA. The mRNA and protein level of AQP3 did not increase with 10H2DA or 10HDAA use. It was thought that the increase in the amount of FLG and the increase in the free amino acids of the epidermis and the stratum corneum, respectively, by 10H2DA were participating in the moisturizing function of the stratum corneum by the continuous use of RJ extract lotion.

  11. Effects of ethanol and acetaldehyde on tight junction integrity: in vitro study in a three dimensional intestinal epithelial cell culture model.

    Directory of Open Access Journals (Sweden)

    Elhaseen Elamin

    Full Text Available BACKGROUND: Intestinal barrier dysfunction and translocation of endotoxins are involved in the pathogenesis of alcoholic liver disease. Exposure to ethanol and its metabolite, acetaldehyde at relatively high concentrations have been shown to disrupt intestinal epithelial tight junctions in the conventional two dimensional cell culture models. The present study investigated quantitatively and qualitatively the effects of ethanol at concentrations detected in the blood after moderate ethanol consumption, of its metabolite acetaldehyde and of the combination of both compounds on intestinal barrier function in a three-dimensional cell culture model. METHODS AND FINDINGS: Caco-2 cells were grown in a basement membrane matrix (Matrigel™ to induce spheroid formation and were then exposed to the compounds at the basolateral side. Morphological differentiation of the spheroids was assessed by immunocytochemistry and transmission electron microscopy. The barrier function was assessed by the flux of FITC-labeled dextran from the basal side into the spheroids' luminal compartment using confocal microscopy. Caco-2 cells grown on Matrigel assembled into fully differentiated and polarized spheroids with a central lumen, closely resembling enterocytes in vivo and provide an excellent model to study epithelial barrier functionality. Exposure to ethanol (10-40 mM or acetaldehyde (25-200 µM for 3 h, dose-dependently and additively increased the paracellular permeability and induced redistribution of ZO-1 and occludin without affecting cell viability or tight junction-encoding gene expression. Furthermore, ethanol and acetaldehyde induced lysine residue and microtubules hyperacetylation. CONCLUSIONS: These results indicate that ethanol at concentrations found in the blood after moderate drinking and acetaldehyde, alone and in combination, can increase the intestinal epithelial permeability. The data also point to the involvement of protein hyperacetylation in

  12. Quantitative volumetric Raman imaging of three dimensional cell cultures

    KAUST Repository

    Kallepitis, Charalambos

    2017-03-22

    The ability to simultaneously image multiple biomolecules in biologically relevant three-dimensional (3D) cell culture environments would contribute greatly to the understanding of complex cellular mechanisms and cell–material interactions. Here, we present a computational framework for label-free quantitative volumetric Raman imaging (qVRI). We apply qVRI to a selection of biological systems: human pluripotent stem cells with their cardiac derivatives, monocytes and monocyte-derived macrophages in conventional cell culture systems and mesenchymal stem cells inside biomimetic hydrogels that supplied a 3D cell culture environment. We demonstrate visualization and quantification of fine details in cell shape, cytoplasm, nucleus, lipid bodies and cytoskeletal structures in 3D with unprecedented biomolecular specificity for vibrational microspectroscopy.

  13. Upregulated epidermal growth factor receptor expression following near-infrared irradiation simulating solar radiation in a three-dimensional reconstructed human corneal epithelial tissue culture model

    Directory of Open Access Journals (Sweden)

    Tanaka Y

    2016-08-01

    Full Text Available Yohei Tanaka,1,2 Jun Nakayama2 1Department of Plastic Surgery, Clinica Tanaka Plastic, Reconstructive Surgery and Anti-aging Center, 2Department of Molecular Pathology, Shinshu University Graduate School of Medicine, Matsumoto, Nagano, Japan Background and objective: Humans are increasingly exposed to near-infrared (NIR radiation from both natural (eg, solar and artificial (eg, electrical appliances sources. Although the biological effects of sun and ultraviolet (UV exposure have been extensively investigated, the biological effect of NIR radiation is still unclear. We previously reported that NIR as well as UV induces photoaging and standard UV-blocking materials, such as sunglasses, do not sufficiently block NIR. The objective of this study was to investigate changes in gene expression in three-dimensional reconstructed corneal epithelial tissue culture exposed to broad-spectrum NIR irradiation to simulate solar NIR radiation that reaches human tissues.Materials and methods: DNA microarray and quantitative real-time polymerase chain reaction analysis were used to assess gene expression levels in a three-dimensional reconstructed corneal epithelial model composed of normal human corneal epithelial cells exposed to water-filtered broad-spectrum NIR irradiation with a contact cooling (20°C. The water-filter allowed 1,000–1,800 nm wavelengths and excluded 1,400–1,500 nm wavelengths.Results: A DNA microarray with >62,000 different probes showed 25 and 150 genes that were up- or downregulated by at least fourfold and twofold, respectively, after NIR irradiation. In particular, epidermal growth factor receptor (EGFR was upregulated by 19.4-fold relative to control cells. Quantitative real-time polymerase chain reaction analysis revealed that two variants of EGFR in human corneal epithelial tissue were also significantly upregulated after five rounds of 10 J/cm2 irradiation (P<0.05.Conclusion: We found that NIR irradiation induced the

  14. Apical polarity in three-dimensional culture systems: where to now?

    Energy Technology Data Exchange (ETDEWEB)

    Inman, J.L.; Bissell, Mina

    2010-01-21

    Delineation of the mechanisms that establish and maintain the polarity of epithelial tissues is essential to understanding morphogenesis, tissue specificity and cancer. Three-dimensional culture assays provide a useful platform for dissecting these processes but, as discussed in a recent study in BMC Biology on the culture of mammary gland epithelial cells, multiple parameters that influence the model must be taken into account.

  15. Three-dimensional model analysis and processing

    CERN Document Server

    Yu, Faxin; Luo, Hao; Wang, Pinghui

    2011-01-01

    This book focuses on five hot research directions in 3D model analysis and processing in computer science:  compression, feature extraction, content-based retrieval, irreversible watermarking and reversible watermarking.

  16. Discretization model for nonlinear dynamic analysis of three dimensional structures

    International Nuclear Information System (INIS)

    Hayashi, Y.

    1982-12-01

    A discretization model for nonlinear dynamic analysis of three dimensional structures is presented. The discretization is achieved through a three dimensional spring-mass system and the dynamic response obtained by direct integration of the equations of motion using central diferences. First the viability of the model is verified through the analysis of homogeneous linear structures and then its performance in the analysis of structures subjected to impulsive or impact loads, taking into account both geometrical and physical nonlinearities is evaluated. (Author) [pt

  17. Growing B Lymphocytes in a Three-Dimensional Culture System

    Science.gov (United States)

    Wu, J. H. David; Bottaro, Andrea

    2010-01-01

    A three-dimensional (3D) culture system for growing long-lived B lymphocytes has been invented. The capabilities afforded by the system can be expected to expand the range of options for immunological research and related activities, including testing of immunogenicity of vaccine candidates in vitro, generation of human monoclonal antibodies, and immunotherapy. Mature lymphocytes, which are the effectors of adaptive immune responses in vertebrates, are extremely susceptible to apoptotic death, and depend on continuous reception of survival-inducing stimulation (in the forms of cytokines, cell-to-cell contacts, and antigen receptor signaling) from the microenvironment. For this reason, efforts to develop systems for long-term culture of functional, non-transformed and non-activated mature lymphocytes have been unsuccessful until now. The bone-marrow microenvironment supports the growth and differentiation of many hematopoietic lineages, in addition to B-lymphocytes. Primary bone-marrow cell cultures designed to promote the development of specific cell types in vitro are highly desirable experimental systems, amenable to manipulation under controlled conditions. However, the dynamic and complex network of stromal cells and insoluble matrix proteins is disrupted in prior plate- and flask-based culture systems, wherein the microenvironments have a predominantly two-dimensional (2D) character. In 2D bone-marrow cultures, normal B-lymphoid cells become progressively skewed toward precursor B-cell populations that do not retain a normal immunophenotype, and such mature B-lymphocytes as those harvested from the spleen or lymph nodes do not survive beyond several days ex vivo in the absence of mitogenic stimulation. The present 3D culture system is a bioreactor that contains highly porous artificial scaffolding that supports the long-term culture of bone marrow, spleen, and lymph-node samples. In this system, unlike in 2D culture systems, B-cell subpopulations developing

  18. Development of three-dimensional cellular culture system for testing of biological effects of radiations in tumoral and non-tumoral models

    International Nuclear Information System (INIS)

    Bonfim, Leticia; Vieira, Daniel Perez; Oliveira, Karina

    2017-01-01

    Pre-clinical drug testing is currently based on based on monolayer or 2D (2D) cell cultures and, despite the large-scale use of this form of culture, there is already scientific evidence that the cellular disposition in monolayers does not adequately simulate tissue physiology, as it prevents cells from expressing their characteristics in a manner analogous to that found in the organism. For this purpose, the work aimed to produce three-dimensional structures, referred as spheroids, using magnetic levitation by adding iron nanoparticles to the cultures and with the aid of magnets. Electron microscopy showed particles with about 20nm in diameter. FTIR (Fourier-transform infrared spectroscopy) analysis showed stretches compatible with iron and amino acid (Lysine) binding. The images showed the formation of spherical bodies until the ninth day. LnCap spheroid diameter varied from (mean ± error) 434.407 ± 50.018 μm (5 th day) to 264.574 ± 13.184 μm (9 t 'h day). Cultures of CHO ranged from 229.237 ± 5.278 μm to 236.719 ± 12.910 μm in the same period. Spheres generated by magnetic levitation could be measured by digital means and compared throughout the experiment. The tool can be used to test the biological effects of radiation and / or radiopharmaceuticals in culture. (author)

  19. Development of three-dimensional cellular culture system for testing of biological effects of radiations in tumoral and non-tumoral models

    Energy Technology Data Exchange (ETDEWEB)

    Bonfim, Leticia; Vieira, Daniel Perez, E-mail: leticia.bonfim@ipen.br [Instituto de Pesquisas Energéticas e Nucleares (IPEN/CNEN-SP), São Paulo, SP (Brazil). Lab. de Radiobiologia; Oliveira, Karina [Universidade Federal de Sao Paulo (UNIFESP), Diadema, SP (Brazil). Departamento de Fisica

    2017-07-01

    Pre-clinical drug testing is currently based on based on monolayer or 2D (2D) cell cultures and, despite the large-scale use of this form of culture, there is already scientific evidence that the cellular disposition in monolayers does not adequately simulate tissue physiology, as it prevents cells from expressing their characteristics in a manner analogous to that found in the organism. For this purpose, the work aimed to produce three-dimensional structures, referred as spheroids, using magnetic levitation by adding iron nanoparticles to the cultures and with the aid of magnets. Electron microscopy showed particles with about 20nm in diameter. FTIR (Fourier-transform infrared spectroscopy) analysis showed stretches compatible with iron and amino acid (Lysine) binding. The images showed the formation of spherical bodies until the ninth day. LnCap spheroid diameter varied from (mean ± error) 434.407 ± 50.018 μm (5{sup th} day) to 264.574 ± 13.184 μm (9{sup t}'h day). Cultures of CHO ranged from 229.237 ± 5.278 μm to 236.719 ± 12.910 μm in the same period. Spheres generated by magnetic levitation could be measured by digital means and compared throughout the experiment. The tool can be used to test the biological effects of radiation and / or radiopharmaceuticals in culture. (author)

  20. Characterization of A Three-Dimensional Organotypic Co-Culture Skin Model for Epidermal Differentiation of Rat Adipose-Derived Stem Cells.

    Science.gov (United States)

    Ghanavati, Zeinab; Orazizadeh, Mahmoud; Bayati, Vahid; Abbaspour, Mohammad Reza; Khorsandi, Layasadat; Mansouri, Esrafil; Neisi, Niloofar

    2016-01-01

    The organotypic co-culture is a well-known technique to examine cellular interactions and their roles in stem cell proliferation and differentiation. This study aims to evaluate the effects of dermal fibroblasts (DFs) on epidermal differentiation of adipose-derived stem cells (ASCs) using a three-dimensional (3D) organotypic co- culture technique. In this experimental research study, rat DFs and ASCs were isolated and cultured separately on electrospun polycaprolactone (PCL) matrices. The PCL matrices seeded by ASCs were superimposed on to the matrices seeded by DFs in order to create a 3D organotypic co-culture. In the control groups, PCL matrices seeded by ASCs were placed on matrices devoid of DFs. After 10 days, we assessed the expressions of keratinocyte-related genes by real-time reverse transcriptase-polymerase chain reaction (RT-PCR) and expression of pan-cytokeratin protein by immunofluorescence in the differentiated keratinocyte-like cells from co- culture and control groups. Keratinocyte-like cell morphologies were also observed by scanning electron microscopy (SEM). The early, intermediate, and terminal differentiation keratinocyte markers-Cytokeratin14, Filaggrin, and Involucrin significantly expressed in the co-culture groups com- pared to the control ones (Pculture groups showed that the differentiated keratinocyte-like cells developed a polygonal cobblestone shape, considered characteristic of keratinocytes. The 3D organotypic co-culture bilayered construct that consisted of DFs and ASCs was an effective technique for epidermal differentiation of ASCs. This co-culture might be useful for epidermal differentiation of stem cells for future applications in skin regeneration.

  1. Robot vision based on three-dimensional model

    International Nuclear Information System (INIS)

    Shirai, Yoshiaki

    1985-01-01

    In order that robots recognize objects, the models of the objects are required. If there is not any constraint about an object scene, it is desirable that robot vision has the three-dimensional models of the things composing the scene. Since the preparation of three-dimensional models takes much time, here, the utilization of the geometrical models made by CAD is proposed. Besides, when the description of a scene and three-dimensional models are compared, to attempt the comparison with all attitudes of respective models is not efficient, therefore, stratum-wise comparison was proposed. As concrete examples, when input information is only in the direction of a part of surfaces such as lustrous bodies, when information can be obtained in all the directions of the surfaces of a body visible by a photometric stereo, and when complete three dimensional information is obtained by a distance-measuring instrument, the techniques of object recognition are described. In all cases, by carrying out the stratum-wise comparison based on three-dimensional models, the efficient and generalized object recognition was able to be achieved. (Kako, I.)

  2. Shape memory polymers: three-dimensional isotropic modeling

    Science.gov (United States)

    Balogun, Olaniyi; Mo, Changki

    2014-04-01

    This paper presents a comprehensive three-dimensional isotropic numerical simulation for a thermo-mechanical constitutive model of shape memory polymers (SMPs). In order to predict the thermo-mechanical behavior of SMPs, a one-dimensional rheological thermo-mechanical constitutive model is adopted, translated into a three-dimensional form and a time discrete form of the three-dimensional model is then presented. Numerical simulation of this model was developed using the UMAT subroutine capabilities of the finite element software ABAQUS. Evolution of the analysis was conducted by making use of the backward difference scheme, which was applied to all quantities within the model, including the material properties. A comparison of the numerical simulation results was carried out with the available experimental data. Numerical simulation results clearly exhibit the thermo-mechanical properties of the material which include shape fixity, shape recovery, and recovery stress. Finally, a prediction for the transverse and shear directions of the material is presented.

  3. Three-dimensional cell culture technique and pathophysiology.

    Science.gov (United States)

    Matsusaki, Michiya; Case, Charles Patrick; Akashi, Mitsuru

    2014-07-01

    Three-dimensional (3D) tissue constructs consisting of human cells have opened a new avenue for tissue engineering, pharmaceutical and pathophysiological applications, and have great potential to estimate the dynamic pharmacological effects of drug candidates, metastasis processes of cancer cells, and toxicity expression of nano-materials, as a 3D-human tissue model instead of in vivo animal experiments. However, most 3D-cellular constructs are a cell spheroid, which is a heterogeneous aggregation, and thus the reconstruction of the delicate and precise 3D-location of multiple types of cells is almost impossible. In recent years, various novel technologies to develop complex 3D-human tissues including blood and lymph capillary networks have demonstrated that physiological human tissue responses can be replicated in the nano/micro-meter ranges. Here, we provide a brief overview on current 3D-tissue fabrication technologies and their biomedical applications. 3D-human tissue models will be a powerful technique for pathophysiological applications. Copyright © 2014 Elsevier B.V. All rights reserved.

  4. Two-and three-dimensional gravity modeling along western ...

    Indian Academy of Sciences (India)

    The western continental margin and the intraplate Narmada-Tapti rifts are primarily covered by Deccan flood basalts. Three-dimensional gravity modeling of +70 mgal Bouguer gravity highs extending in the north-south direction along the western continental margin rift indicates the presence of a subsurface high density, ...

  5. Mathematical modeling of three-dimensional images in emission tomography

    International Nuclear Information System (INIS)

    Koblik, Yu.N.; Khugaev, A. V.; Mktchyan, G.A.; Ioannou, P.; Dimovasili, E.

    2002-01-01

    The model of processing results of three-dimensional measurements in positron-emissive tomograph is proposed in this work. The algorithm of construction and visualization of phantom objects of arbitrary shape was developed and its concrete realization in view of program packet for PC was carried out

  6. and three-dimensional gravity modeling along western continental ...

    Indian Academy of Sciences (India)

    Three-dimensional gravity modeling of +70 mgal Bouguer gravity highs extending in the north-south direction along the western continental margin rift indicates the presence of a subsurface high density, mafic-ultramafic type, elongated, roughly ellipsoidal body. It is approximately 12.0 ± 1.2 km thick with its upper surface at ...

  7. Three dimensional simulated modelling of diffusion capacitance of ...

    African Journals Online (AJOL)

    A three dimensional (3-D) simulated modelling was developed to analyse the excess minority carrier density in the base of a polycrystalline bifacial silicon solar cell. The concept of junction recombination velocity was ado-pted to quantify carrier flow through the junction, and to examine the solar cell diffusion capacitance for ...

  8. Three-dimensional computer models of electrospinning systems

    Directory of Open Access Journals (Sweden)

    Smółka Krzysztof

    2017-12-01

    Full Text Available Electrospinning is a very interesting method that allows the fabrication of continuous fibers with diameters down to a few nanometers. This paper presents an overview of electrospinning systems as well as their comparison using proposed three-dimensional parameterized numerical models. The presented solutions allow an analysis of the electric field distribution.

  9. and three-dimensional models for analysis of optical absorption

    Indian Academy of Sciences (India)

    Unknown

    Goldberg et al 1975; Kam and Parkinson 1982; Baglio et al 1982, 1983; Oritz 1995; Li et al 1996) has been carried out on WS2, there is no detailed analysis of the absorption spectra obtained from the single crystals of WS2 on the basis of two- and three-dimensional models. We have therefore carried out this study and the.

  10. and three-dimensional gravity modeling along western continental ...

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    western continental margin and the intraplate Narmada-Tapti rifts suggests that the migration and concentration of high density magma in the upper lithosphere was much more dominant along the western continental margin rift. Based on the three-dimensional gravity modeling, it is conjectured that the emplacement of ...

  11. Three dimensional rigorous model for optical scattering problems

    NARCIS (Netherlands)

    Wei, X.

    2006-01-01

    We present a three-dimensional model based on the finite element method for solving the time-harmonic Maxwell equation in optics. It applies to isotropic or anisotropic dielectrics and metals, and to many configurations such as an isolated scatterer in a multilayer, bi-gratings and crystals. We

  12. Three-dimensional computer models of electrospinning systems

    Science.gov (United States)

    Smółka, Krzysztof; Firych-Nowacka, Anna; Lefik, Marcin

    2017-12-01

    Electrospinning is a very interesting method that allows the fabrication of continuous fibers with diameters down to a few nanometers. This paper presents an overview of electrospinning systems as well as their comparison using proposed three-dimensional parameterized numerical models. The presented solutions allow an analysis of the electric field distribution.

  13. TU-H-CAMPUS-TeP3-01: Gold Nanoparticle-Enhanced Radiation Therapy in In Vitro A549 Lung Carcinoma: Studies in Both Traditional Monolayer and Three Dimensional Cell Culture Models

    Energy Technology Data Exchange (ETDEWEB)

    Oumano, M [Baystate Medical Center, Springfield, MA (United States); University of Massachusetts Lowell, Lowell, MA (United States); Ngwa, W [University of Massachusetts Lowell, Lowell, MA (United States); Harvard Medical School, Boston, MA (United States); Celli, J; Hempstead, J; Petrovic, L [University of Massachusetts Boston, Boston, MA (United States); Arnoldussen, M; Hanlon, J [Oraya Therapeutics inc., Newark, CA (United States)

    2016-06-15

    Purpose: To measure the increase in in vitro radiosensitivity for A549 lung carcinoma cells due to gold nanoparticle (GNP) radiation dose enhancement in both traditional monolayer and three dimensional (3D) cell culture models. Methods: A γH2AX immunofluorescence assay is performed on monolayer A549 cell culture and quantitatively analyzed to measure the increase in double strand breaks (DSBs) resulting from GNP dose enhancement. A clonogenic survival assay (CSA) is then performed on monolayer A549 cell culture to assess true viability after treatment. And lastly, another γH2AX assay is performed on 3D A549 multicellular nodules overlaid on a bed of growth factor reduced matrigel to measure dose response in a model that better recapitulates treatment response to actual tumors in vivo. Results: The first γH2AX assay performed on the monolayer cell culture shows a significant increase in DSBs due to GNP dose enhancement. The maximum average observed increase in normalized fluorescent intensity for monolayer cell culture is 171% for the 6Gy-treatment groups incubated in 0.556 mg Au/ml solution. The CSA performed on monolayer cell culture also shows considerable GNP dose enhancement. The maximum decrease in the normalized surviving fraction is 12% for the 4Gy-treatment group incubated in 0.556 mg Au/ml. And lastly, the GNP dose enhancement is confirmed to be mitigated in three dimensional cell culture models as compared to the traditional monolayer model. The maximum average observed dose enhancement for 3D cell culture is 19% for the 6Gy-treatment groups and incubated in 0.556 mg Au/ml. Conclusion: A marked increase in radiosensitivity is observed for A549 lung carcinoma cells when treated with GNPs plus radiation as opposed to radiation alone. Traditional monolayer cell culture also shows a much more pronounced radiation dose enhancement than 3D cell culture.

  14. A three-dimensional model of women's empowerment

    OpenAIRE

    Huis, Marloes A.; Hansen, Nina; Otten, Sabine; Lensink, Robert

    2017-01-01

    Women's empowerment is an important goal in achieving sustainable development worldwide. Offering access to microfinance services to women is one way to increase women's empowerment. However, empirical evidence provides mixed results with respect to its effectiveness. We reviewed previous research on the impact of microfinance services on different aspects of women's empowerment. We propose a Three-Dimensional Model of Women's Empowerment to integrate previous findings and to gain a deeper un...

  15. Reversible gelling culture media for in-vitro cell culture in three-dimensional matrices

    Science.gov (United States)

    An, Yuehuei H.; Mironov, Vladimir A.; Gutowska, Anna

    2000-01-01

    A gelling cell culture medium useful for forming a three dimensional matrix for cell culture in vitro is prepared by copolymerizing an acrylamide derivative with a hydrophilic comonomer to form a reversible (preferably thermally reversible) gelling linear random copolymer in the form of a plurality of linear chains having a plurality of molecular weights greater than or equal to a minimum gelling molecular weight cutoff, mixing the copolymer with an aqueous solvent to form a reversible gelling solution and adding a cell culture medium to the gelling solution to form the gelling cell culture medium. Cells such as chondrocytes or hepatocytes are added to the culture medium to form a seeded culture medium, and temperature of the medium is raised to gel the seeded culture medium and form a three dimensional matrix containing the cells. After propagating the cells in the matrix, the cells may be recovered by lowering the temperature to dissolve the matrix and centrifuging.

  16. Three-dimensional Modeling of Type Ia Supernova Explosions

    Science.gov (United States)

    Khokhlov, Alexei

    2001-06-01

    A deflagration explosion of a Type Ia Supernova (SNIa) is studied using three-dimensional, high-resolution, adaptive mesh refinement fluid dynamic calculations. Deflagration speed in an exploding Chandrasekhar-mass carbon-oxygen white dwarf (WD) grows exponentially, reaches approximately 30the speed of sound, and then declines due to a WD expansion. Outermost layers of the WD remain unburned. The explosion energy is comparable to that of a Type Ia supernova. The freezing of turbulent motions by expansion appears to be a crucial physical mechanism regulating the strength of a supernova explosion. In contrast to one-dimensional models, three-dimensional calculations predict the formation of Si-group elements and pockets of unburned CO in the middle and in central regions of a supernova ejecta. This, and the presence of unburned outer layer of carbon-oxygen may pose problems for SNIa spectra. Explosion sensitivity to initial conditions and its relation to a diversity of SNIa is discussed.

  17. On a Three Dimensional Vision Based Collision Avoidance Model

    Science.gov (United States)

    Parzani, Céline; Filbet, Francis

    2017-08-01

    This paper presents a three dimensional collision avoidance approach for aerial vehicles inspired by coordinated behaviors in biological groups. The proposed strategy aims to enable a group of vehicles to converge to a common destination point avoiding collisions with each other and with moving obstacles in their environment. The interaction rules lead the agents to adapt their velocity vectors through a modification of the relative bearing angle and the relative elevation. Moreover the model satisfies the limited field of view constraints resulting from individual perception sensitivity. From the proposed individual based model, a mean-field kinetic model is derived. Simulations are performed to show the effectiveness of the proposed model.

  18. A Three-dimensional Topological Model of Ternary Phase Diagram

    International Nuclear Information System (INIS)

    Mu, Yingxue; Bao, Hong

    2017-01-01

    In order to obtain a visualization of the complex internal structure of ternary phase diagram, the paper realized a three-dimensional topology model of ternary phase diagram with the designed data structure and improved algorithm, under the guidance of relevant theories of computer graphics. The purpose of the model is mainly to analyze the relationship between each phase region of a ternary phase diagram. The model not only obtain isothermal section graph at any temperature, but also extract a particular phase region in which users are interested. (paper)

  19. Summary of three-dimensional animation creation based on ethnic culture element

    Directory of Open Access Journals (Sweden)

    Shao Zhaopo

    2016-01-01

    Full Text Available three-dimensional animation is a product combined by technology and art. It is an artistic ex-pression form combining painting, film & television, digital technology, music, and literature. As an audio and visual art, three-dimensional animation has its own unique culture-loading function, technical aesthetic charac-teristics, and requirements for national art expression. This paper aims to find the method to combine digital technology and national art in combination of three-dimensional animation short film creation, and hopes to clear the road for the cultivation of domestic three-dimensional animation quality project.

  20. Magnetic properties of three-dimensional Hubbard-sigma model

    International Nuclear Information System (INIS)

    Yamamoto, Hisashi; Ichinose, Ikuo; Tatara, Gen; Matsui, Tetsuo.

    1989-11-01

    It is broadly viewed that the magnetism may play an important role in the high-T c superconductivity in the lamellar CuO 2 materials. In this paper, based on a Hubbard-inspired CP 1 or S 2 nonlinear σ model, we give a quantitative study of some magnetic properties in and around the Neel ordered state of three-dimensional quantum antiferromagnets such as La 2 CuO 4 with and without small hole doping. Our model is a (3+1) dimensional effective field theory describing the low energy spin dynamics of a three-dimensional Hubbard model with a very weak interlayer coupling. The effect of hole dynamics is taken into account in the leading approximation by substituting the CP 1 coupling with an 'effective' one determined by the concentration and the one-loop correction of hole fermions. A stationary-phase equation for the one-loop effective potential of S 2 model is analyzed numerically. The behavior of Neel temperature, magnetization (long range Neel order), spin correlation length, etc as functions of anisotropic parameter, temperature, hole concentrations, etc are investigated in detail. A phase diagram is also supported by the renormlization group analysis. The results show that our anisotropic field theory model with certain values of parameters could give a reasonably well description of the magnetic properties indicated by some experiments on pure and doped La 2 CuO 4 . (author)

  1. Three-dimensional modeler for animated images display system

    International Nuclear Information System (INIS)

    Boubekeur, Rania

    1987-01-01

    The mv3d software allows the modeling and display of three dimensional objects in interpretative mode with animation possibility in real time. This system is intended for a graphical extension of a FORTH interpreter (implemented by CEA/IRDI/D.LETI/DEIN) in order to control a specific hardware (3.D card designed and implemented by DEIN) allowing the generation of three dimensional objects. The object description is carried out with a specific graphical language integrated in the FORTH interpreter. Objects are modeled using elementary solids called basic forms (cube, cone, cylinder...) assembled with classical geometric transformations (rotation, translation and scaling). These basic forms are approximated by plane polygonal facets further divided in triangles. Coordinates of the summits of triangles constitute the geometrical data. These are sent to the 3.D. card for processing and display. Performed processing are: geometrical transformations on display, hidden surface elimination, shading and clipping. The mv3d software is not an entire modeler but a simple, modular and extensible tool, to which other specific functions may be easily added such as: robots motion, collisions... (author) [fr

  2. Modeling emissions for three-dimensional atmospheric chemistry transport models.

    Science.gov (United States)

    Matthias, Volker; Arndt, Jan A; Aulinger, Armin; Bieser, Johannes; Denier Van Der Gon, Hugo; Kranenburg, Richard; Kuenen, Jeroen; Neumann, Daniel; Pouliot, George; Quante, Markus

    2018-01-24

    Poor air quality is still a threat for human health in many parts of the world. In order to assess measures for emission reductions and improved air quality, three-dimensional atmospheric chemistry transport modeling systems are used in numerous research institutions and public authorities. These models need accurate emission data in appropriate spatial and temporal resolution as input. This paper reviews the most widely used emission inventories on global and regional scale and looks into the methods used to make the inventory data model ready. Shortcomings of using standard temporal profiles for each emission sector are discussed and new methods to improve the spatio-temporal distribution of the emissions are presented. These methods are often neither top-down nor bottom-up approaches but can be seen as hybrid methods that use detailed information about the emission process to derive spatially varying temporal emission profiles. These profiles are subsequently used to distribute bulk emissions like national totals on appropriate grids. The wide area of natural emissions is also summarized and the calculation methods are described. Almost all types of natural emissions depend on meteorological information, which is why they are highly variable in time and space and frequently calculated within the chemistry transport models themselves. The paper closes with an outlook for new ways to improve model ready emission data, for example by using external databases about road traffic flow or satellite data to determine actual land use or leaf area. In a world where emission patterns change rapidly, it seems appropriate to use new types of statistical and observational data to create detailed emission data sets and keep emission inventories up-to-date. Emission data is probably the most important input for chemistry transport model (CTM) systems. It needs to be provided in high temporal and spatial resolution and on a grid that is in agreement with the CTM grid. Simple

  3. Efficient hepatic differentiation of human induced pluripotent stem cells in a three-dimensional microscale culture.

    Science.gov (United States)

    Zhang, Ran-Ran; Takebe, Takanori; Miyazaki, Leina; Takayama, Maho; Koike, Hiroyuki; Kimura, Masaki; Enomura, Masahiro; Zheng, Yun-Wen; Sekine, Keisuke; Taniguchi, Hideki

    2014-01-01

    Human induced pluripotent stem cells (iPSCs) represent a novel source of hepatocytes for drug development, disease modeling studies, and regenerative therapy for the treatment of liver diseases. A number of protocols for generating functional hepatocytes have been reported worldwide; however, reproducible and efficient differentiation remained challenging under conventional two-dimensional (2D) culture. In this study, we describe an efficient differentiation protocol for generating functional hepatocyte-like cells from human iPSC-derived homogenous hepatic endoderm cells combined with three-dimensional (3D) microscale culture system. First, hepatic endoderm cells (iPSC-HEs) were directly differentiated using two-step approaches, and then cultured in the 3D micropattern plate. Human iPSC-HEs quickly reaggregated and formed hundreds of round-shaped spheroids at day 4 of cell plating. The size distribution of iPSC-HEs derived spheroids was relatively uniform around 100-200 μm in diameter. After 14 days, iPSC-HEs efficiently differentiated into hepatocyte-like cells in terms of hepatic maker gene expression compared with conventional 2D approach. We conclude that our scalable and three-dimensional culture system would be one promising approach to generate a huge number of hepatocyte-like cells from human iPSCs aiming at future industrial and clinical applications.

  4. Media Compositions for Three Dimensional Mammalian Tissue Growth Under Microgravity Culture Conditions

    Science.gov (United States)

    Goodwin, Thomas J. (Inventor)

    1998-01-01

    Normal mammalian tissue and the culturing process has been developed for the three groups of organ, structural and blood tissue. The cells are grown in vitro under microgravity culture conditions and form three dimensional cells aggregates with normal cell function. The microgravity culture conditions may be microgravity or simulated microgravity created in a horizontal rotating wall culture vessel.

  5. Media Compositions for Three-Dimensional Mammalian Tissue Growth under Microgravity Culture Conditions

    Science.gov (United States)

    Goodwin, Thomas J. (Inventor)

    1998-01-01

    Normal mammalian tissue and the culturing process has been developed for the three groups of organ, structural and blood tissue.The cells are grown in vitro under microgravity culture conditions and form three dimensional cells aggregates with normal cell function. The microgravity culture conditions may be microgravity or simulated microgravity created in a horizontal rotating wall culture vessel.

  6. High-Content Screening Comparison of Cancer Drug Accumulation and Distribution in Two-Dimensional and Three-Dimensional Culture Models of Head and Neck Cancer.

    Science.gov (United States)

    Shan, Feng; Close, David A; Camarco, Daniel P; Johnston, Paul A

    2018-01-01

    High cancer drug development attrition rates have provoked considerable debate about whether the two-dimensional tumor growth inhibition high-throughput screening assays used in pre-clinical lead discovery adequately reflect solid tumor complexity. We used automated high-content screening image acquisition and analysis methods to compare fluorescent drug uptake, accumulation, and distribution in Cal33 and FaDu head and neck cancer (HNC) monolayer and multicellular tumor spheroid (MCTS) models. Ellipticine, idarubicin, daunorubicin, and doxorubicin were studied because of their fluorescent properties and broad anti-tumor activities. HNC MCTSs were generated in 384-well ultra-low attachment plates where compound exposure, image acquisition, and analysis could be performed in situ. Fluorescent drug accumulation in Cal33 monolayer and MCTS cultures was linear with respect to concentration, and appeared to achieve steady-state levels within 10-15 min of drug exposure, which were maintained through 30-45 min. Drug accumulation in monolayers was independent of cell number and/or density, and every cell achieved uniform drug concentrations. In MCTSs, however, drug accumulation increased as the number of cells and sizes of the MCTSs became bigger. Drugs exhibited restricted penetration and distribution gradients, accumulating preferentially in cells in the outer layers of MCTSs relative to those in the inner cores. Cal33 monolayers were 6-, 20-, 10-, and 16-fold more sensitive than MCTSs to growth inhibition by ellipticine, idarubicin, daunorubicin, and doxorubicin, respectively. In Cal33 MCTSs exposed to ellipticine or doxorubicin for 24 h, MCTSs were smaller and although they still exhibited drug penetration and distribution gradients, the fluorescent intensity difference between outer and inner cells was reduced. After a 24 h exposure, both drugs had penetrated throughout FaDu MCTSs, consistent with drug-induced death of peripheral cell layers enhancing drug

  7. Electrospinning PCL Scaffolds Manufacture for Three-Dimensional Breast Cancer Cell Culture

    Directory of Open Access Journals (Sweden)

    Marc Rabionet

    2017-08-01

    Full Text Available In vitro cell culture is traditionally performed within two-dimensional (2D environments, providing a quick and cheap way to study cell properties in a laboratory. However, 2D systems differ from the in vivo environment and may not mimic the physiological cell behavior realistically. For instance, 2D culture models are thought to induce cancer stem cells (CSCs differentiation, a rare cancer cell subpopulation responsible for tumor initiation and relapse. This fact hinders the development of therapeutic strategies for tumors with a high relapse percentage, such as triple negative breast cancer (TNBC. Thus, three-dimensional (3D scaffolds have emerged as an attractive alternative to monolayer culture, simulating the extracellular matrix structure and maintaining the differentiation state of cells. In this work, scaffolds were fabricated through electrospinning different poly(ε-caprolactone-acetone solutions. Poly(ε-caprolactone (PCL meshes were seeded with triple negative breast cancer (TNBC cells and 15% PCL scaffolds displayed significantly (p < 0.05 higher cell proliferation and elongation than the other culture systems. Moreover, cells cultured on PCL scaffolds exhibited higher mammosphere forming capacity and aldehyde dehydrogenase activity than 2D-cultured cells, indicating a breast CSCs enrichment. These results prove the powerful capability of electrospinning technology in terms of poly(ε-caprolactone nanofibers fabrication. In addition, this study has demonstrated that electrospun 15% PCL scaffolds are suitable tools to culture breast cancer cells in a more physiological way and to expand the niche of breast CSCs. In conclusion, three-dimensional cell culture using PCL scaffolds could be useful to study cancer stem cell behavior and may also trigger the development of new specific targets against such malignant subpopulation.

  8. A THREE-DIMENSIONAL BABCOCK-LEIGHTON SOLAR DYNAMO MODEL

    International Nuclear Information System (INIS)

    Miesch, Mark S.; Dikpati, Mausumi

    2014-01-01

    We present a three-dimensional (3D) kinematic solar dynamo model in which poloidal field is generated by the emergence and dispersal of tilted sunspot pairs (more generally bipolar magnetic regions, or BMRs). The axisymmetric component of this model functions similarly to previous 2.5 dimensional (2.5D, axisymmetric) Babcock-Leighton (BL) dynamo models that employ a double-ring prescription for poloidal field generation but we generalize this prescription into a 3D flux emergence algorithm that places BMRs on the surface in response to the dynamo-generated toroidal field. In this way, the model can be regarded as a unification of BL dynamo models (2.5D in radius/latitude) and surface flux transport models (2.5D in latitude/longitude) into a more self-consistent framework that builds on the successes of each while capturing the full 3D structure of the evolving magnetic field. The model reproduces some basic features of the solar cycle including an 11 yr periodicity, equatorward migration of toroidal flux in the deep convection zone, and poleward propagation of poloidal flux at the surface. The poleward-propagating surface flux originates as trailing flux in BMRs, migrates poleward in multiple non-axisymmetric streams (made axisymmetric by differential rotation and turbulent diffusion), and eventually reverses the polar field, thus sustaining the dynamo. In this Letter we briefly describe the model, initial results, and future plans

  9. Three-dimensional decomposition models for carbon productivity

    International Nuclear Information System (INIS)

    Meng, Ming; Niu, Dongxiao

    2012-01-01

    This paper presents decomposition models for the change in carbon productivity, which is considered a key indicator that reflects the contributions to the control of greenhouse gases. Carbon productivity differential was used to indicate the beginning of decomposition. After integrating the differential equation and designing the Log Mean Divisia Index equations, a three-dimensional absolute decomposition model for carbon productivity was derived. Using this model, the absolute change of carbon productivity was decomposed into a summation of the absolute quantitative influences of each industrial sector, for each influence factor (technological innovation and industrial structure adjustment) in each year. Furthermore, the relative decomposition model was built using a similar process. Finally, these models were applied to demonstrate the decomposition process in China. The decomposition results reveal several important conclusions: (a) technological innovation plays a far more important role than industrial structure adjustment; (b) industry and export trade exhibit great influence; (c) assigning the responsibility for CO 2 emission control to local governments, optimizing the structure of exports, and eliminating backward industrial capacity are highly essential to further increase China's carbon productivity. -- Highlights: ► Using the change of carbon productivity to measure a country's contribution. ► Absolute and relative decomposition models for carbon productivity are built. ► The change is decomposed to the quantitative influence of three-dimension. ► Decomposition results can be used for improving a country's carbon productivity.

  10. Three-dimensional (3D) culture in sarcoma research and the clinical significance.

    Science.gov (United States)

    Gao, Songtao; Shen, Jacson; Hornicek, Francis; Duan, Zhenfeng

    2017-08-03

    Sarcomas are rare malignant tumors that arise from transformed cells of mesenchymal origin. Despite the progress in diagnosis and treatment, sarcomas have a high mortality rate due to local recurrence, metastasis, and the development of drug resistance to chemotherapy. New models for sarcoma research are required to further understand the disease and to develop new therapies. In vitro sarcoma modeling is challenging because of significant genetic heterogeneities, diverse pathological, and overlapping clinical characteristics. Studies on the mechanisms of recurrence, metastasis, and drug resistance in sarcoma have resulted in the generation of novel three-dimensional (3D) culture models for sarcoma research. 3D culture models aim to recapitulate the tumor microenvironment that plays a critical role in the pathogenesis of sarcoma using biomaterial scaffolds of natural biological materials and artificial polymers. An ideal 3D culture model can properly mimic not only the microenvironment, oncogenesis, and maintenance of sarcoma cell growth, but also imitate the interactions between cells and to the extracellular matrix. More recently, 3D cell culture has been used to research the biological behavior and mechanism of chemotherapy and radiotherapy resistance in different sarcoma models. Ultimately, findings using 3D models that more accurately reflect human sarcoma biology are likely to translate into improved clinical outcomes. In this review, we discuss the most recent advances of 3D culture technologies in sarcoma research and emerging clinical applications.

  11. A microfluidically perfused three dimensional human liver model.

    Science.gov (United States)

    Rennert, Knut; Steinborn, Sandra; Gröger, Marko; Ungerböck, Birgit; Jank, Anne-Marie; Ehgartner, Josef; Nietzsche, Sandor; Dinger, Julia; Kiehntopf, Michael; Funke, Harald; Peters, Frank T; Lupp, Amelie; Gärtner, Claudia; Mayr, Torsten; Bauer, Michael; Huber, Otmar; Mosig, Alexander S

    2015-12-01

    Within the liver, non-parenchymal cells (NPCs) are critically involved in the regulation of hepatocyte polarization and maintenance of metabolic function. We here report the establishment of a liver organoid that integrates NPCs in a vascular layer composed of endothelial cells and tissue macrophages and a hepatic layer comprising stellate cells co-cultured with hepatocytes. The three-dimensional liver organoid is embedded in a microfluidically perfused biochip that enables sufficient nutrition supply and resembles morphological aspects of the human liver sinusoid. It utilizes a suspended membrane as a cell substrate mimicking the space of Disse. Luminescence-based sensor spots were integrated into the chip to allow online measurement of cellular oxygen consumption. Application of microfluidic flow induces defined expression of ZO-1, transferrin, ASGPR-1 along with an increased expression of MRP-2 transporter protein within the liver organoids. Moreover, perfusion was accompanied by an increased hepatobiliary secretion of 5(6)-carboxy-2',7'-dichlorofluorescein and an enhanced formation of hepatocyte microvilli. From this we conclude that the perfused liver organoid shares relevant morphological and functional characteristics with the human liver and represents a new in vitro research tool to study human hepatocellular physiology at the cellular level under conditions close to the physiological situation. Copyright © 2015 Elsevier Ltd. All rights reserved.

  12. Three-dimensional culture conditions lead to decreased radiation induced cytotoxicity in human mammary epithelial cells

    International Nuclear Information System (INIS)

    Sowa, Marianne B.; Chrisler, William B.; Zens, Kyra D.; Ashjian, Emily J.; Opresko, Lee K.

    2010-01-01

    For both targeted and non-targeted exposures, the cellular responses to ionizing radiation have predominantly been measured in two-dimensional monolayer cultures. Although convenient for biochemical analysis, the true interactions in vivo depend upon complex interactions between cells themselves and the surrounding extracellular matrix. This study directly compares the influence of culture conditions on radiation induced cytotoxicity following exposure to low-LET ionizing radiation. Using a three-dimensional (3D) human mammary epithelial tissue model, we have found a protective effect of 3D cell culture on cell survival after irradiation. The initial state of the cells (i.e., 2D versus 3D culture) at the time of irradiation does not alter survival, nor does the presence of extracellular matrix during and after exposure to dose, but long term culture in 3D which offers significant reduction in cytotoxicity at a given dose (e.g. ∼4-fold increased survival at 5 Gy). The cell cycle delay induced following exposure to 2 and 5 Gy was almost identical between 2D and 3D culture conditions and cannot account for the observed differences in radiation responses. However the amount of apoptosis following radiation exposure is significantly decreased in 3D culture relative to the 2D monolayer after the same dose. A likely mechanism of the cytoprotective effect afforded by 3D culture conditions is the down regulation of radiation induced apoptosis in 3D structures.

  13. Development of an interactive anatomical three-dimensional eye model.

    Science.gov (United States)

    Allen, Lauren K; Bhattacharyya, Siddhartha; Wilson, Timothy D

    2015-01-01

    The discrete anatomy of the eye's intricate oculomotor system is conceptually difficult for novice students to grasp. This is problematic given that this group of muscles represents one of the most common sites of clinical intervention in the treatment of ocular motility disorders and other eye disorders. This project was designed to develop a digital, interactive, three-dimensional (3D) model of the muscles and cranial nerves of the oculomotor system. Development of the 3D model utilized data from the Visible Human Project (VHP) dataset that was refined using multiple forms of 3D software. The model was then paired with a virtual user interface in order to create a novel 3D learning tool for the human oculomotor system. Development of the virtual eye model was done while attempting to adhere to the principles of cognitive load theory (CLT) and the reduction of extraneous load in particular. The detailed approach, digital tools employed, and the CLT guidelines are described herein. © 2014 American Association of Anatomists.

  14. A comprehensive three-dimensional model of the cochlea

    International Nuclear Information System (INIS)

    Givelberg, Edward; Bunn, Julian

    2003-01-01

    The human cochlea is a remarkable device, able to discern extremely small amplitude sound pressure waves, and discriminate between very close frequencies. Simulation of the cochlea is computationally challenging due to its complex geometry, intricate construction and small physical size. We have developed, and are continuing to refine, a detailed three-dimensional computational model based on an accurate cochlear geometry obtained from physical measurements. In the model, the immersed boundary method is used to calculate the fluid-structure interactions produced in response to incoming sound waves. The model includes a detailed and realistic description of the various elastic structures present. In this paper, we describe the computational model and its performance on the latest generation of shared memory servers from Hewlett Packard. Using compiler generated threads and OpenMP directives, we have achieved a high degree of parallelism in the executable, which has made possible several large scale numerical simulation experiments that study the interesting features of the cochlear system. We show several results from these simulations, reproducing some of the basic known characteristics of cochlear mechanics

  15. A review of the three-dimensional cell culture technique: Approaches, advantages and applications.

    Science.gov (United States)

    Zhang, Weijie; Zhuang, Ai; Gu, Ping; Zhou, Huifang; Fan, Xianqun

    2016-01-01

    Cell culture is a core and basic technique in biotechnology and is widely applied in biology, medicine, drug research and development. Traditional two-dimensional cell culture methods have undergone great developments. However, with in-depth basic research, higher requirements are needed to better mimic the in vivo environment to accurately observe cell behavior and explore its mechanisms. To comply with this situation, the three-dimensional cell culture technique emerged and has made profound advances in sustaining inherent cell properties. Here, we briefly review the development of this technique, including the main approaches to form three-dimensional microtissues, and its application and potential for future clinical therapies.

  16. Three-dimensional transient electromagnetic modeling in the Laplace Domain

    International Nuclear Information System (INIS)

    Mizunaga, H.; Lee, Ki Ha; Kim, H.J.

    1998-01-01

    In modeling electromagnetic responses, Maxwell's equations in the frequency domain are popular and have been widely used (Nabighian, 1994; Newman and Alumbaugh, 1995; Smith, 1996, to list a few). Recently, electromagnetic modeling in the time domain using the finite difference (FDTD) method (Wang and Hohmann, 1993) has also been used to study transient electromagnetic interactions in the conductive medium. This paper presents a new technique to compute the electromagnetic response of three-dimensional (3-D) structures. The proposed new method is based on transforming Maxwell's equations to the Laplace domain. For each discrete Laplace variable, Maxwell's equations are discretized in 3-D using the staggered grid and the finite difference method (FDM). The resulting system of equations is then solved for the fields using the incomplete Cholesky conjugate gradient (ICCG) method. The new method is particularly effective in saving computer memory since all the operations are carried out in real numbers. For the same reason, the computing speed is faster than frequency domain modeling. The proposed approach can be an extremely useful tool in developing an inversion algorithm using the time domain data

  17. ALGE3D: A Three-Dimensional Transport Model

    Science.gov (United States)

    Maze, G. M.

    2017-12-01

    Of the top 10 most populated US cities from a 2015 US Census Bureau estimate, 7 of the cities are situated near the ocean, a bay, or on one of the Great Lakes. A contamination of the water ways in the United States could be devastating to the economy (through tourism and industries such as fishing), public health (from direct contact, or contaminated drinking water), and in some cases even infrastructure (water treatment plants). Current national response models employed by emergency response agencies have well developed models to simulate the effects of hazardous contaminants in riverine systems that are primarily driven by one-dimensional flows; however in more complex systems, such as tidal estuaries, bays, or lakes, a more complex model is needed. While many models exist, none are capable of quick deployment in emergency situations that could contain a variety of release situations including a mixture of both particulate and dissolved chemicals in a complex flow area. ALGE3D, developed at the Department of Energy's (DOE) Savannah River National Laboratory (SRNL), is a three-dimensional hydrodynamic code which solves the momentum, mass, and energy conservation equations to predict the movement and dissipation of thermal or dissolved chemical plumes discharged into cooling lakes, rivers, and estuaries. ALGE3D is capable of modeling very complex flows, including areas with tidal flows which include wetting and drying of land. Recent upgrades have increased the capabilities including the transport of particulate tracers, allowing for more complete modeling of the transport of pollutants. In addition the model is capable of coupling with a one-dimension riverine transport model or a two-dimension atmospheric deposition model in the event that a contamination event occurs upstream or upwind of the water body.

  18. A three dimensional model of a vane rheometer

    International Nuclear Information System (INIS)

    Nazari, Behzad; Moghaddam, Ramin Heidari; Bousfield, Douglas

    2013-01-01

    Highlights: • FEM was used to calculate the isothermal flow parameters in a vane geometry. • Velocity, pressure and then stress fields were obtained. • Using total stress, shaft torque was calculated to compare with experimental data. • A modified cell Reynolds number and power number were used to study flow pattern. • A comparison between 2D and 3D modeling was done based on calculated torques. -- Abstract: Vane type geometries are often used in rheometers to avoid slippage between the sample and the fixtures. While yield stress and other rheological properties can be obtained with this geometry, a complete analysis of this complex flow field is lacking in the literature. In this work, a finite element method is used to calculate the isothermal flow parameters in a vane geometry. The method solves the mass and momentum continuity equations to obtain velocity, pressure and then stress fields. Using the total stress numerical data, we calculated the torque applied on solid surfaces. The validity of the computational model was established by comparing the results to experimental results of shaft torque at different angular velocities. The conditions where inertial terms become important and the linear relationship between torque and stress are quantified with dimensionless groups. The accuracy of a two dimensional analysis is compared to the three dimensional results

  19. Three dimensional modelling of earthquake rupture cycles on frictional faults

    Science.gov (United States)

    Simpson, Guy; May, Dave

    2017-04-01

    We are developing an efficient MPI-parallel numerical method to simulate earthquake sequences on preexisting faults embedding within a three dimensional viscoelastic half-space. We solve the velocity form of the elasto(visco)dynamic equations using a continuous Galerkin Finite Element Method on an unstructured pentahedral mesh, which thus permits local spatial refinement in the vicinity of the fault. Friction sliding is coupled to the viscoelastic solid via rate- and state-dependent friction laws using the split-node technique. Our coupled formulation employs a picard-type non-linear solver with a fully implicit, first order accurate time integrator that utilises an adaptive time step that efficiently evolves the system through multiple seismic cycles. The implementation leverages advanced parallel solvers, preconditioners and linear algebra from the Portable Extensible Toolkit for Scientific Computing (PETSc) library. The model can treat heterogeneous frictional properties and stress states on the fault and surrounding solid as well as non-planar fault geometries. Preliminary tests show that the model successfully reproduces dynamic rupture on a vertical strike-slip fault in a half-space governed by rate-state friction with the ageing law.

  20. Modeling Three-Dimensional Chromosome Structures Using Gene Expression Data.

    Science.gov (United States)

    Xiao, Guanghua; Wang, Xinlei; Khodursky, Arkady B

    2011-03-01

    Recent genomic studies have shown that significant chromosomal spatial correlation exists in gene expression of many organisms. Interestingly, coexpression has been observed among genes separated by a fixed interval in specific regions of a chromosome chain, which is likely caused by three-dimensional (3D) chromosome folding structures. Modeling such spatial correlation explicitly may lead to essential understandings of 3D chromosome structures and their roles in transcriptional regulation. In this paper, we explore chromosomal spatial correlation induced by 3D chromosome structures, and propose a hierarchical Bayesian method based on helical structures to formally model and incorporate the correlation into the analysis of gene expression microarray data. It is the first study to quantify and infer 3D chromosome structures in vivo using expression microarrays. Simulation studies show computing feasibility of the proposed method and that, under the assumption of helical chromosome structures, it can lead to precise estimation of structural parameters and gene expression levels. Real data applications demonstrate an intriguing biological phenomenon that functionally associated genes, which are far apart along the chromosome chain, are brought into physical proximity by chromosomal folding in 3D space to facilitate their coexpression. It leads to important biological insight into relationship between chromosome structure and function.

  1. Three-Dimensional Modeling of Fracture Clusters in Geothermal Reservoirs

    Energy Technology Data Exchange (ETDEWEB)

    Ghassemi, Ahmad [Univ. of Oklahoma, Norman, OK (United States)

    2017-08-11

    The objective of this is to develop a 3-D numerical model for simulating mode I, II, and III (tensile, shear, and out-of-plane) propagation of multiple fractures and fracture clusters to accurately predict geothermal reservoir stimulation using the virtual multi-dimensional internal bond (VMIB). Effective development of enhanced geothermal systems can significantly benefit from improved modeling of hydraulic fracturing. In geothermal reservoirs, where the temperature can reach or exceed 350oC, thermal and poro-mechanical processes play an important role in fracture initiation and propagation. In this project hydraulic fracturing of hot subsurface rock mass will be numerically modeled by extending the virtual multiple internal bond theory and implementing it in a finite element code, WARP3D, a three-dimensional finite element code for solid mechanics. The new constitutive model along with the poro-thermoelastic computational algorithms will allow modeling the initiation and propagation of clusters of fractures, and extension of pre-existing fractures. The work will enable the industry to realistically model stimulation of geothermal reservoirs. The project addresses the Geothermal Technologies Office objective of accurately predicting geothermal reservoir stimulation (GTO technology priority item). The project goal will be attained by: (i) development of the VMIB method for application to 3D analysis of fracture clusters; (ii) development of poro- and thermoelastic material sub-routines for use in 3D finite element code WARP3D; (iii) implementation of VMIB and the new material routines in WARP3D to enable simulation of clusters of fractures while accounting for the effects of the pore pressure, thermal stress and inelastic deformation; (iv) simulation of 3D fracture propagation and coalescence and formation of clusters, and comparison with laboratory compression tests; and (v) application of the model to interpretation of injection experiments (planned by our

  2. A Three-Dimensional Model of the Yeast Genome

    Science.gov (United States)

    Noble, William; Duan, Zhi-Jun; Andronescu, Mirela; Schutz, Kevin; McIlwain, Sean; Kim, Yoo Jung; Lee, Choli; Shendure, Jay; Fields, Stanley; Blau, C. Anthony

    Layered on top of information conveyed by DNA sequence and chromatin are higher order structures that encompass portions of chromosomes, entire chromosomes, and even whole genomes. Interphase chromosomes are not positioned randomly within the nucleus, but instead adopt preferred conformations. Disparate DNA elements co-localize into functionally defined aggregates or factories for transcription and DNA replication. In budding yeast, Drosophila and many other eukaryotes, chromosomes adopt a Rabl configuration, with arms extending from centromeres adjacent to the spindle pole body to telomeres that abut the nuclear envelope. Nonetheless, the topologies and spatial relationships of chromosomes remain poorly understood. Here we developed a method to globally capture intra- and inter-chromosomal interactions, and applied it to generate a map at kilobase resolution of the haploid genome of Saccharomyces cerevisiae. The map recapitulates known features of genome organization, thereby validating the method, and identifies new features. Extensive regional and higher order folding of individual chromosomes is observed. Chromosome XII exhibits a striking conformation that implicates the nucleolus as a formidable barrier to interaction between DNA sequences at either end. Inter-chromosomal contacts are anchored by centromeres and include interactions among transfer RNA genes, among origins of early DNA replication and among sites where chromosomal breakpoints occur. Finally, we constructed a three-dimensional model of the yeast genome. Our findings provide a glimpse of the interface between the form and function of a eukaryotic genome.

  3. Phase Diagrams of Three-Dimensional Anderson and Quantum Percolation Models Using Deep Three-Dimensional Convolutional Neural Network

    Science.gov (United States)

    Mano, Tomohiro; Ohtsuki, Tomi

    2017-11-01

    The three-dimensional Anderson model is a well-studied model of disordered electron systems that shows the delocalization-localization transition. As in our previous papers on two- and three-dimensional (2D, 3D) quantum phase transitions [https://doi.org/10.7566/JPSJ.85.123706" xlink:type="simple">J. Phys. Soc. Jpn. 85, 123706 (2016), https://doi.org/10.7566/JPSJ.86.044708" xlink:type="simple">86, 044708 (2017)], we used an image recognition algorithm based on a multilayered convolutional neural network. However, in contrast to previous papers in which 2D image recognition was used, we applied 3D image recognition to analyze entire 3D wave functions. We show that a full phase diagram of the disorder-energy plane is obtained once the 3D convolutional neural network has been trained at the band center. We further demonstrate that the full phase diagram for 3D quantum bond and site percolations can be drawn by training the 3D Anderson model at the band center.

  4. Making three-dimensional Monson's sphere using virtual dental models.

    Science.gov (United States)

    Nam, Shin-Eun; Park, Young-Seok; Lee, WooCheol; Ahn, Sug-Joon; Lee, Seung-Pyo

    2013-04-01

    The Monson's sphere and curve of Wilson can be used as reference for prosthetic reconstructions or orthodontic treatments. This study aimed to generate and measure the three-dimensional (3-D) Monson's sphere and curve of Wilson using virtual dental models and custom software. Mandibular dental casts from 79 young adults of Korean descent were scanned and rendered as virtual dental models using a 3-D digitizing scanner. 26 landmarks were digitized on the virtual dental models using a custom made software program. The Monson's sphere was estimated by fitting a sphere to the cusp tips using a least-squares method. Two curves of Wilson were generated by finding the intersecting circle between the Monson's sphere and two vertical planes orthogonal to a virtual occlusal plane. Non-parametric Mann-Whitney and Kruskal-Wallis tests were performed to test for difference between sex and in cusp number within tooth position. The mean radius of Monson's sphere was 110.89 ± 25.75 mm. There were significant differences between males and females in all measurements taken (pocclusal curvature (p>0.05). This study describes a best-fit algorithm for generating 3-D Monson's sphere using occlusal curves quantified from virtual dental models. The radius of Monson's sphere in Korean subjects was greater than the original four-inch value suggested by Monson. The Monson's sphere and curve of Wilson can be used as a reference for prosthetic reconstruction and orthodontic treatment. The data found in this study may be applied to improve dental treatment results. Copyright © 2013 Elsevier Ltd. All rights reserved.

  5. The efficacy of cetuximab in a tissue-engineered three-dimensional in vitro model of colorectal cancer

    Directory of Open Access Journals (Sweden)

    Tarig Magdeldin

    2014-07-01

    Full Text Available The preclinical development process of chemotherapeutic drugs is often carried out in two-dimensional monolayer cultures. However, a considerable amount of evidence demonstrates that two-dimensional cell culture does not accurately reflect the three-dimensional in vivo tumour microenvironment, specifically with regard to gene expression profiles, oxygen and nutrient gradients and pharmacokinetics. With this objective in mind, we have developed and established a physiologically relevant three-dimensional in vitro model of colorectal cancer based on the removal of interstitial fluid from collagen type I hydrogels. We employed the RAFT™ (Real Architecture For 3D Tissue system for producing three-dimensional cultures to create a controlled reproducible, multiwell testing platform. Using the HT29 and HCT116 cell lines to model epidermal growth factor receptor expressing colorectal cancers, we characterized three-dimensional cell growth and morphology in addition to the anti-proliferative effects of the anti–epidermal growth factor receptor chemotherapeutic agent cetuximab in comparison to two-dimensional monolayer cultures. Cells proliferated well for 14 days in three-dimensional culture and formed well-defined cellular aggregates within the concentrated collagen matrix. Epidermal growth factor receptor expression levels revealed a twofold and threefold increase in three-dimensional cultures for both HT29 and HCT116 cells in comparison to two-dimensional monolayers, respectively (p < 0.05; p < 0.01. Cetuximab efficacy was significantly lower in HT29 three-dimensional cultures in comparison to two-dimensional monolayers, whereas HCT116 cells in both two-dimension and three-dimension were non-responsive to treatment in agreement with their KRAS mutant status. In summary, these results confirm the use of a three-dimensional in vitro cancer model as a suitable drug-screening platform for in vitro pharmacological testing.

  6. Cytokeratin expression of engrafted three-dimensional culture tissues using epithelial cells derived from porcine periodontal ligaments.

    Science.gov (United States)

    Yamada, Rie; Kitajima, Kayoko; Arai, Kyoko; Igarashi, Masaru

    2014-09-01

    This study investigated the differentiation and proliferation of epithelial cells derived from periodontal ligaments after three-dimensional culture using collagen gel with fibroblasts in vitro and in vivo. Epithelial cells and fibroblasts were derived from porcine periodontal ligaments. Epithelial cells were labeled using a fluorescent red membrane marker (PKH-26GL) and were seeded onto collagen gel with fibroblasts, followed by incubation in an air-liquid interface for 7 days. Three-dimensional cultures were grafted onto the backs of nude mice and removed at 1, 7, and 14 days after surgery (in vivo model). Unfixed sections (5 μm) were used to detect the presence of red fluorescent cells. Paraffin sections were analyzed histologically and immunohistochemically. Specimens were compared with three-dimensional culture tissues at 8, 14 and 21 days (in vitro model). Grafted three-dimensional cultures formed a stratified epithelial structure similar to skin in vivo. Epithelial cells were sequenced in basal-layer-like structures at 14 days in vivo. Immunohistochemical findings showed that the expression of cytokeratin was detected in the epithelial layer in in vitro and in vivo models. Ck8 + 18 + 19 was expressed in the upper epithelial layer in the in vitro model at 14 and 21 days, but not in vivo. Involucrin was expressed in the certified layers in vitro at 14 days, but not in vivo. Laminin was detected at the dermo-epidermal junction in vivo at 7 and 14 days, but not in vitro. These results suggest that differentiation of three-dimensional culture tissues differs in vivo and in vitro. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  7. A Novel Microgravity Simulator Applicable for Three-Dimensional Cell Culturing

    Science.gov (United States)

    Wuest, Simon L.; Richard, Stéphane; Walther, Isabelle; Furrer, Reinhard; Anderegg, Roland; Sekler, Jörg; Egli, Marcel

    2014-10-01

    Random Positioning Machines (RPM) were introduced decades ago to simulate microgravity. Since then numerous experiments have been carried out to study its influence on biological samples. The machine is valued by the scientific community involved in space relevant topics as an excellent experimental tool to conduct pre-studies, for example, before sending samples into space. We have developed a novel version of the traditional RPM to broaden its operative range. This novel version has now become interesting to researchers who are working in the field of tissue engineering, particularly those interested in alternative methods for three-dimensional (3D) cell culturing. The main modifications concern the cell culture condition and the algorithm that controls the movement of the frames for the nullification of gravity. An incubator was integrated into the inner frame of the RPM allowing precise control over the cell culture environment. Furthermore, several feed-throughs now allow a permanent supply of gas like CO 2. All these modifications substantially improve conditions to culture cells; furthermore, the rewritten software responsible for controlling the movement of the frames enhances the quality of the generated microgravity. Cell culture experiments were carried out with human lymphocytes on the novel RPM model to compare the obtained response to the results gathered on an older well-established RPM as well as to data from space flights. The overall outcome of the tests validates this novel RPM for cell cultivation under simulated microgravity conditions.

  8. Functional Characterization of Resting and Adenovirus-Induced Reactive Astrocytes in Three-Dimensional Culture.

    Science.gov (United States)

    Woo, Junsung; Im, Sun-Kyoung; Chun, Heejung; Jung, Soon-Young; Oh, Soo-Jin; Choi, Nakwon; Lee, C Justin; Hur, Eun-Mi

    2017-06-01

    Brain is a rich environment where neurons and glia interact with neighboring cells as well as extracellular matrix in three-dimensional (3D) space. Astrocytes, which are the most abundant cells in the mammalian brain, reside in 3D space and extend highly branched processes that form microdomains and contact synapses. It has been suggested that astrocytes cultured in 3D might be maintained in a less reactive state as compared to those growing in a traditional, two-dimensional (2D) monolayer culture. However, the functional characterization of the astrocytes in 3D culture has been lacking. Here we cocultured neurons and astrocytes in 3D and examined the morphological, molecular biological, and electrophysiological properties of the 3D-cultured hippocampal astrocytes. In our 3D neuron-astrocyte coculture, astrocytes showed a typical morphology of a small soma with many branches and exhibited a unique membrane property of passive conductance, more closely resembling their native in vivo counterparts. Moreover, we also induced reactive astrocytosis in culture by infecting with high-titer adenovirus to mimic pathophysiological conditions in vivo . Adenoviral infection induced morphological changes in astrocytes, increased passive conductance, and increased GABA content as well as tonic GABA release, which are characteristics of reactive gliosis. Together, our study presents a powerful in vitro model resembling both physiological and pathophysiological conditions in vivo , and thereby provides a versatile experimental tool for studying various neurological diseases that accompany reactive astrocytes.

  9. Induction of carcinoembryonic antigen expression in a three-dimensional culture system

    Science.gov (United States)

    Jessup, J. M.; Brown, D.; Fitzgerald, W.; Ford, R. D.; Nachman, A.; Goodwin, T. J.; Spaulding, G.

    1994-01-01

    MIP-101 is a poorly differentiated human colon carcinoma cell line established from ascites that produces minimal amounts of carcinoembryonic antigen (CEA), a 180 kDa glycoprotein tumor marker, and nonspecific cross-reacting antigen (NCA), a related protein that has 50 and 90 kDa isoforms, in vitro in monolayer culture. MIP-101 produces CEA when implanted into the peritoneum of nude mice but not when implanted into subcutaneous tissue. We tested whether MIP-101 cells may be induced to express CEA when cultured on microcarrier beads in three-dimensional cultures, either in static cultures as non-adherent aggregates or under dynamic conditions in a NASA-designed low shear stress bioreactor. MIP- 101 cells proliferated well under all three conditions and increased CEA and NCA production 3 - 4 fold when grown in three-dimensional cultures compared to MIP-101 cells growing logarithmically in monolayers. These results suggest that three-dimensional growth in vitro simulates tumor function in vivo and that three-dimensional growth by itself may enhance production of molecules that are associated with the metastatic process.

  10. Three-Dimensional Analysis and Modeling of a Wankel Engine

    Science.gov (United States)

    Raju, M. S.; Willis, E. A.

    1991-01-01

    A new computer code, AGNI-3D, has been developed for the modeling of combustion, spray, and flow properties in a stratified-charge rotary engine (SCRE). The mathematical and numerical details of the new code are described by the first author in a separate NASA publication. The solution procedure is based on an Eulerian-Lagrangian approach where the unsteady, three-dimensional Navier-Stokes equations for a perfect gas-mixture with variable properties are solved in generalized, Eulerian coordinates on a moving grid by making use of an implicit finite-volume, Steger-Warming flux vector splitting scheme. The liquid-phase equations are solved in Lagrangian coordinates. The engine configuration studied was similar to existing rotary engine flow-visualization and hot-firing test rigs. The results of limited test cases indicate a good degree of qualitative agreement between the predicted and measured pressures. It is conjectured that the impulsive nature of the torque generated by the observed pressure nonuniformity may be one of the mechanisms responsible for the excessive wear of the timing gears observed during the early stages of the rotary combustion engine (RCE) development. It was identified that the turbulence intensities near top-dead-center were dominated by the compression process and only slightly influenced by the intake and exhaust processes. Slow mixing resulting from small turbulence intensities within the rotor pocket and also from a lack of formation of any significant recirculation regions within the rotor pocket were identified as the major factors leading to incomplete combustion. Detailed flowfield results during exhaust and intake, fuel injection, fuel vaporization, combustion, mixing and expansion processes are also presented. The numerical procedure is very efficient as it takes 7 to 10 CPU hours on a CRAY Y-MP for one entire engine cycle when the computations are performed over a 31 x16 x 20 grid.

  11. Oxygen diffusion and consumption in extracellular matrix gels: implications for designing three-dimensional cultures.

    Science.gov (United States)

    Colom, Adai; Galgoczy, Roland; Almendros, Isaac; Xaubet, Antonio; Farré, Ramon; Alcaraz, Jordi

    2014-08-01

    Three-dimensional (3D) cultures are increasingly used as tissue surrogates to study many physiopathological processes. However, to what extent current 3D culture protocols provide physiologic oxygen tension conditions remains ill defined. To address this limitation, oxygen tension was measured in a panel of acellular or cellularized extracellular matrix (ECM) gels with A549 cells, and analyzed in terms of oxygen diffusion and consumption. Gels included reconstituted basement membrane, fibrin and collagen. Oxygen diffusivity in acellular gels was up to 40% smaller than that of water, and the lower values were observed in the denser gels. In 3D cultures, physiologic oxygen tension was achieved after 2 days in dense (≥3 mg/mL) but not sparse gels, revealing that the latter gels are not suitable tissue surrogates in terms of oxygen distribution. In dense gels, we observed a dominant effect of ECM composition over density in oxygen consumption. All diffusion and consumption data were used in a simple model to estimate ranges for gel thickness, seeding density and time-window that may support physiologic oxygen tension. Thus, we identified critical variables for oxygen tension in ECM gels, and introduced a model to assess initial values of these variables, which may short-cut the optimization step of 3D culture studies. © 2013 Wiley Periodicals, Inc.

  12. Modelling flexible link manipulators in the three-dimensional space

    Science.gov (United States)

    Kozel, David

    The force/torque relationship between the joints and the end effector of flexible link manipulators is affected not only by the motion of the joints but also by translations and rotations of the links due to their bending and torsion effects. These inaccuracies in the force/torque relationship for flexible manipulators in the three-dimensional space are addressed. This thesis presents the development of a systematic technique for determining for force/torque relationship between the joints and the end effector for flexible link manipulators. The proposed technique accounts for link bending and torsion in the kinematic equations of a flexible manipulator while considering rigid hubs and tools attached to the ends of the links. A procedure for modelling link bending and torsion to within a desired accuracy has also been developed. The resulting model is independent of manipulator configuration. In this technique, vector cross products are used instead of partial derivatives. This reduces inaccuracies which result from approximations made in the kinematic equations when modelling bending and torsion of the links. The magnitude and location of these inaccuracies are characterized. The validity of the proposed technique/procedure and the inaccuracies noted are demonstrated for link bending of a single-link planar manipulator by comparing simulations of the resulting force/torque relationships to results obtained experimentally; however, the experiments were not able to illustrate the torsion effect in the proposed model. Results indicate that the magnitude and location of the errors in the force/torque relationship are dependent upon the rotation due to link deformation, the 'length' of the rest of the manipulator, and the configuration of the manipulator. Although the proposed technique is able to account for the link bending and torsion effects in the kinematic equations of a flexible manipulator, it also suffers from several limitations. These include: translations

  13. Increased Paracrine Immunomodulatory Potential of Mesenchymal Stromal Cells in Three-Dimensional Culture

    DEFF Research Database (Denmark)

    Follin, Bjarke; Juhl, Morten; Cohen, Smadar

    2016-01-01

    Mesenchymal stromal/stem cells (MSCs) have been investigated extensively through the past years, proving to have great clinical therapeutic potential. In vitro cultivation of MSCs in three-dimensional (3D) culture systems, such as scaffolds, hydrogels, or spheroids, have recently gained attention...

  14. Three-dimensional Huh7 cell culture system for the study of Hepatitis C virus infection

    Directory of Open Access Journals (Sweden)

    Uprichard Susan L

    2009-07-01

    Full Text Available Abstract Background In order to elucidate how Hepatitis C Virus (HCV interacts with polarized hepatocytes in vivo and how HCV-induced alterations in cellular function contribute to HCV-associated liver disease, a more physiologically relevant hepatocyte culture model is needed. As such, NASA-engineered three-dimensional (3-D rotating wall vessel (RWV bioreactors were used in effort to promote differentiation of HCV-permissive Huh7 hepatoma cells. Results When cultured in the RWV, Huh7 cells became morphologically and transcriptionally distinct from more standard Huh7 two-dimensional (2-D monolayers. Specifically, RWV-cultured Huh7 cells formed complex, multilayered 3-D aggregates in which Phase I and Phase II xenobiotic drug metabolism genes, as well as hepatocyte-specific transcripts (HNF4α, Albumin, TTR and α1AT, were upregulated compared to 2-D cultured Huh7 cells. Immunofluorescence analysis revealed that these HCV-permissive 3-D cultured Huh7 cells were more polarized than their 2D counterparts with the expression of HCV receptors, cell adhesion and tight junction markers (CD81, scavenger receptor class B member 1, claudin-1, occludin, ZO-1, β-Catenin and E-Cadherin significantly increased and exhibiting apical, lateral and/or basolateral localization. Conclusion These findings show that when cultured in 3-D, Huh7 cells acquire a more differentiated hepatocyte-like phenotype. Importantly, we show that these 3D cultures are highly permissive for HCV infection, thus providing an opportunity to study HCV entry and the effects of HCV infection on host cell function in a more physiologically relevant cell culture system.

  15. Three dimensional heat transport modeling in Vossoroca reservoir

    Science.gov (United States)

    Arcie Polli, Bruna; Yoshioka Bernardo, Julio Werner; Hilgert, Stephan; Bleninger, Tobias

    2017-04-01

    Freshwater reservoirs are used for many purposes as hydropower generation, water supply and irrigation. In Brazil, according to the National Energy Balance of 2013, hydropower energy corresponds to 70.1% of the Brazilian demand. Superficial waters (which include rivers, lakes and reservoirs) are the most used source for drinking water supply - 56% of the municipalities use superficial waters as a source of water. The last two years have shown that the Brazilian water and electricity supply is highly vulnerable and that improved management is urgently needed. The construction of reservoirs affects physical, chemical and biological characteristics of the water body, e.g. stratification, temperature, residence time and turbulence reduction. Some water quality issues related to reservoirs are eutrophication, greenhouse gas emission to the atmosphere and dissolved oxygen depletion in the hypolimnion. The understanding of the physical processes in the water body is fundamental to reservoir management. Lakes and reservoirs may present a seasonal behavior and stratify due to hydrological and meteorological conditions, and especially its vertical distribution may be related to water quality. Stratification can control heat and dissolved substances transport. It has been also reported the importance of horizontal temperature gradients, e.g. inflows and its density and processes of mass transfer from shallow to deeper regions of the reservoir, that also may impact water quality. Three dimensional modeling of the heat transport in lakes and reservoirs is an important tool to the understanding and management of these systems. It is possible to estimate periods of large vertical temperature gradients, inhibiting vertical transport and horizontal gradients, which could be responsible for horizontal transport of heat and substances (e.g. differential cooling or inflows). Vossoroca reservoir was constructed in 1949 by the impoundment of São João River and is located near to

  16. Liver progenitor cells develop cholangiocyte-type epithelial polarity in three-dimensional culture.

    OpenAIRE

    Tanimizu, Naoki; Miyajima, Atsushi; Mostov, Keith E

    2007-01-01

    Cholangiocytes are cellular components of the bile duct system of the liver, which originate from hepatoblasts during embryonic liver development. Although several transcription factors and signaling molecules have been implicated in bile duct development, its molecular mechanism has not been studied in detail. Here, we applied a three-dimensional (3D) culture technique to a liver progenitor cell line, HPPL, to establish an in vitro culture system in which HPPL acquire differentiated cholangi...

  17. Biodynamic imaging for phenotypic profiling of three-dimensional tissue culture

    Science.gov (United States)

    Sun, Hao; Merrill, Daniel; An, Ran; Turek, John; Matei, Daniela; Nolte, David D.

    2017-01-01

    Three-dimensional (3-D) tissue culture represents a more biologically relevant environment for testing new drugs compared to conventional two-dimensional cancer cell culture models. Biodynamic imaging is a high-content 3-D optical imaging technology based on low-coherence interferometry and digital holography that uses dynamic speckle as high-content image contrast to probe deep inside 3-D tissue. Speckle contrast is shown to be a scaling function of the acquisition time relative to the persistence time of intracellular transport and hence provides a measure of cellular activity. Cellular responses of 3-D multicellular spheroids to paclitaxel are compared among three different growth techniques: rotating bioreactor (BR), hanging-drop (HD), and nonadherent (U-bottom, UB) plate spheroids, compared with ex vivo living tissues. HD spheroids have the most homogeneous tissue, whereas BR spheroids display large sample-to-sample variability as well as spatial heterogeneity. The responses of BR-grown tumor spheroids to paclitaxel are more similar to those of ex vivo biopsies than the responses of spheroids grown using HD or plate methods. The rate of mitosis inhibition by application of taxol is measured through tissue dynamics spectroscopic imaging, demonstrating the ability to monitor antimitotic chemotherapy. These results illustrate the potential use of low-coherence digital holography for 3-D pharmaceutical screening applications.

  18. Three-Dimensional Model for Preservation and Restoration of Architectural Heritage

    Science.gov (United States)

    Marchis, Elena

    2011-01-01

    Thc aim of the research will be to create a model, three-dimensional mathematical. implementation. consultation and assistance to "large" restoration projects that will assist the structural analysis, allowing easier display of dynamic strain. analysis and lighting noise. It could also be a valuable tool for decision support. therefore. may simulate several possible scenarios for intervention, This model appears therefore an excellent support for recovering. ordering and monitoring information about materials and data (stage of restoration. photographs. sampling points. results of diagnostic tests, etc.) collected dynamically during the "life" of the cultural heritage. allowing to document its complete history

  19. Entrapment of cultured pancreas islets in three-dimensional collagen matrices.

    Science.gov (United States)

    Chao, S H; Peshwa, M V; Sutherland, D E; Hu, W S

    1992-01-01

    In vitro culture of islets of Langerhans decreases their immunogenicity, presumably by eliminating passenger leukocytes and other Ia+ presenting cells within the islets. Islets cultivated in petri dishes either at 37 degrees C or at 25 degrees C gradually disintegrate during culture in a time-dependent manner which is related to the free-floating condition of the islets. Also, a fraction of the islets disperse as single cells and beta-cell aggregates or adhere to the bottom of the culture dishes. Thus, the retrieval rate of transplantable islets is dampened due to their disintegration and spontaneous dispersion in conventional petri dish cultures. Entrapment of freshly harvested islets of Langerhans in a three-dimensional collagen matrix was studied as an alternative method for islet cultivation. The contraction of collagen fibrils during in vitro culture counteracts the dispersion of islets and helps in maintaining their integrity while in culture. It was observed that the entrapped islets maintain satisfactory morphology, viability, and capability of glucose-dependent insulin secretion for over 2 wk. The oxygen consumption rate and glucose metabolism of these islets was not deranged when entrapped in collagen. Also, the retrieval of islets is easier and more efficient than that observed in conventional culture systems. Our results indicate that culture of islets in three-dimensional collagen gels can potentially develop into an ideal system applicable to clinical transplantation of cultured islets or beta-cell aggregates.

  20. Tailor-made three-dimensional hybrid scaffolds for cell cultures

    International Nuclear Information System (INIS)

    Psycharakis, Stylianos; Melissinaki, Vasileia; Giakoumaki, Anastasia; Ranella, Anthi; Tosca, Androniki

    2011-01-01

    The construction of the ideal three-dimensional scaffold for cell culture is one of the most intriguing topics in tissue engineering. It has been shown that cells can be cultured on most organic biomimetic materials, which now are losing popularity in favour of novel, hybrid systems. In this study, a series of photosensitive sol-gel hybrid materials, based on silicon-zirconium and silicon-titanium oxides, have been investigated for their suitability in three-dimensional scaffold fabrication. These materials can be structured by two-photon polymerization, a laser-based technique allowing the fabrication of micrometre-size structures with submicron resolution. The work presented here examined the effect of the organic/inorganic composition of the materials on cell behaviour and the establishment of a 'cell-culture friendly' environment. This is vital for cell adhesion, growth and differentiation, as the organic part of the material provides the soft matrix for cell growth, whereas the inorganic component gives the mechanical stability and rigidity of the three-dimensional structures. In addition, the use of femtosecond laser structuring permits the fabrication of a wide range of mechanically stable scaffolds of different sizes and shapes to be tested in terms of cell viability, proliferation and orientation.

  1. Assessing Adipogenic Potential of Mesenchymal Stem Cells: A Rapid Three-Dimensional Culture Screening Technique

    Directory of Open Access Journals (Sweden)

    Jean F. Welter

    2013-01-01

    Full Text Available Bone-marrow-derived mesenchymal stem cells (MSCs have the potential to differentiate into a number of phenotypes, including adipocytes. Adipogenic differentiation has traditionally been performed in monolayer culture, and, while the expression of a fat-cell phenotype can be achieved, this culture method is labor and material intensive and results in only small numbers of fragile adherent cells, which are not very useful for further applications. Aggregate culture is a cell-culture technique in which cells are induced to form three-dimensional aggregates; this method has previously been used successfully, among others, to induce and study chondrogenic differentiation of MSCs. We have previously published an adaptation of the chondrogenic aggregate culture method to a 96-well plate format. Based on the success of this method, we have used the same format for the preparation of three-dimensional adipogenic cultures. The MSCs differentiate rapidly, the aggregates can be handled and processed for histologic and biochemical assays with ease, and the format offers significant savings in supplies and labor. As a differentiation assay, this method can distinguish between degrees of senescence and appears suitable for testing medium or drug formulations in a high-volume, high-throughput fashion.

  2. Assessing adipogenic potential of mesenchymal stem cells: a rapid three-dimensional culture screening technique.

    Science.gov (United States)

    Welter, Jean F; Penick, Kitsie J; Solchaga, Luis A

    2013-01-01

    Bone-marrow-derived mesenchymal stem cells (MSCs) have the potential to differentiate into a number of phenotypes, including adipocytes. Adipogenic differentiation has traditionally been performed in monolayer culture, and, while the expression of a fat-cell phenotype can be achieved, this culture method is labor and material intensive and results in only small numbers of fragile adherent cells, which are not very useful for further applications. Aggregate culture is a cell-culture technique in which cells are induced to form three-dimensional aggregates; this method has previously been used successfully, among others, to induce and study chondrogenic differentiation of MSCs. We have previously published an adaptation of the chondrogenic aggregate culture method to a 96-well plate format. Based on the success of this method, we have used the same format for the preparation of three-dimensional adipogenic cultures. The MSCs differentiate rapidly, the aggregates can be handled and processed for histologic and biochemical assays with ease, and the format offers significant savings in supplies and labor. As a differentiation assay, this method can distinguish between degrees of senescence and appears suitable for testing medium or drug formulations in a high-volume, high-throughput fashion.

  3. Three-dimensional semi-idealized model for estuarine turbidity maxima in tidally dominated estuaries

    NARCIS (Netherlands)

    Kumar, Mohit; Schuttelaars, Henk M.; Roos, Pieter C.

    2017-01-01

    We develop a three-dimensional idealized model that is specifically aimed at gaining insight in the physical mechanisms resulting in the formation of estuarine turbidity maxima in tidally dominated estuaries. First, the three-dimensional equations for water motion and suspended sediment

  4. A three-dimensional approach to in vitro culture of immune-related cells

    DEFF Research Database (Denmark)

    Hartmann, Sofie Bruun

    was found preferable compared to PBMC cultures, partly due to the risk of losing cell subsets after purification of PBMCs. The development of in vitro culture systems for more than 50 years ago revolutionized the biomedical world. It became possible to study cell behavior using cell lines or primary cells...... to interfere with cell morphology, gene expression and overall behavior and as such gives a poor reflection of in vivo cell behavior. Therefore, it is believed that by mimicking the in vivo conditions within the cultures, this would generate “closer-to-in vivo” results. For this purpose three dimensional (3D...... functions. The in vitro reactivation of antigen-experienced T lymphocytes and detection of IFN-γ from cell cultures can be used in a diagnostic assay to test for disease or vaccine efficacy. Practical procedures of the IFN-γ release assay (IGRA) was investigated using bovine cells and whole blood cultures...

  5. Three-Dimensional, Transgenic Cell Models to Quantify Space Genotoxic Effects

    Science.gov (United States)

    Gonda, S. R.; Sognier, M. A.; Wu, H.; Pingerelli, P. L.; Glickman, B. W.; Dawson, David L. (Technical Monitor)

    1999-01-01

    The space environment contains radiation and chemical agents known to be mutagenic and carcinogenic to humans. Additionally, microgravity is a complicating factor that may modify or synergize induced genotoxic effects. Most in vitro models fail to use human cells (making risk extrapolation to humans more difficult), overlook the dynamic effect of tissue intercellular interactions on genotoxic damage, and lack the sensitivity required to measure low-dose effects. Currently a need exists for a model test system that simulates cellular interactions present in tissue, and can be used to quantify genotoxic damage induced by low levels of radiation and chemicals, and extrapolate assessed risk to humans. A state-of-the-art, three-dimensional, multicellular tissue equivalent cell culture model will be presented. It consists of mammalian cells genetically engineered to contain multiple copies of defined target genes for genotoxic assessment,. NASA-designed bioreactors were used to coculture mammalian cells into spheroids, The cells used were human mammary epithelial cells (H184135) and Stratagene's (Austin, Texas) Big Blue(TM) Rat 2 lambda fibroblasts. The fibroblasts were genetically engineered to contain -a high-density target gene for mutagenesis (60 copies of lacl/LacZ per cell). Tissue equivalent spheroids were routinely produced by inoculation of 2 to 7 X 10(exp 5) fibroblasts with Cytodex 3 beads (150 micrometers in diameter). at a 20:1 cell:bead ratio, into 50-ml HARV bioreactors (Synthecon, Inc.). Fibroblasts were cultured for 5 days, an equivalent number of epithelial cells added, and the fibroblast/epithelial cell coculture continued for 21 days. Three-dimensional spheroids with diameters ranging from 400 to 600 micrometers were obtained. Histological and immunohistochemical Characterization revealed i) both cell types present in the spheroids, with fibroblasts located primarily in the center, surrounded by epithelial cells; ii) synthesis of extracellular matrix

  6. Construction of a Three-Dimensional in vitro skin model on polycaprolactone fibers.

    Science.gov (United States)

    Liu, Qi; Zhang, Ru-Zhi; Xu, Bin

    2017-05-16

    To observe the morphological characteristics and the biological properties of human epidermal cells when cultured at an air-liquid interface in polycaprolactone (PCL) fibers as a three-dimensional scaffold for tissue engineering. In this study, the melanocytes and keratinocytes were obtained from human scalp skin, seeded onto a PCL film, and cocultured for 2 weeks to construct a three-dimensional (3D) skin model. The cells were then characterized by hematoxylin and eosin (H&E) staining, by immunohistochemical staining with antibodies to cytokeratin 15 (CK15), Ki-67, CD34, CD200 and HMB45 and by transmission electron microscopy. Keratinocytes and melanocytes grew well in the co-culture system. Hematoxylin and eosin staining revealed that the cells adhered to the PCLfiber scaffold well, the keratinocyte layer became a multilayered concentric structure and the surface became distinctly keratinized at the air-liquid interface. Immunohistochemical analyses exhibited a scattered distribution of cells expressing CK15, CD34, CD200, Ki-67 and/or HMB45. Transmission electron microscopy revealed that the keratinocytes contained a number of keratin fibrils and membrane-coated granules. The PCL scaffold has excellent adhesiveness and biocompatibility with human epidermal cells, and is suitable for constructing 3D skin models for tissue engineering in the future.

  7. Usefulness Of Three-Dimensional Printing Models for Patients with Stoma Construction

    Directory of Open Access Journals (Sweden)

    Tetsuro Tominaga

    2016-04-01

    Full Text Available The use of patient-specific organ models in three-dimensional printing systems could be helpful for the education of patients and medical students. The aim of this study was to clarify whether the use of patient-specific stoma models is helpful for patient education. From January 2014 to September 2014, 5 patients who underwent colorectal surgery and for whom a temporary or permanent stoma had been created were involved in this study. Three-dimensional stoma models and three-dimensional face plates were created. The patients’ ages ranged from 59 to 81 years. Four patients underwent stoma construction because of rectal cancer, and 1 underwent stoma construction because of colon stenosis secondary to recurrent cancer. All patients were educated about their stoma and potential stoma-associated problems using three-dimensional stoma models, and all practiced cutting face plates using three-dimensional face plates. The models were also used during medical staff conferences to discuss current issues. All patients understood their problems and finally became self-reliant. The recent availability of three-dimensional printers has enabled the creation of many organ models, and full-scale stoma and face plate models are now available for patient education on cutting an appropriately individualized face plate. Thus, three-dimensional printers could enable fewer skin problems than are currently associated with daily stomal care.

  8. Usefulness Of Three-Dimensional Printing Models for Patients with Stoma Construction

    OpenAIRE

    Tominaga, Tetsuro; Takagi, Katsunori; Takeshita, Hiroaki; Miyamoto, Tomo; Shimoda, Kozue; Matsuo, Ayano; Matsumoto, Keitaro; Hidaka, Shigekazu; Yamasaki, Naoya; Sawai, Terumitsu; Nagayasu, Takeshi

    2016-01-01

    The use of patient-specific organ models in three-dimensional printing systems could be helpful for the education of patients and medical students. The aim of this study was to clarify whether the use of patient-specific stoma models is helpful for patient education. From January 2014 to September 2014, 5 patients who underwent colorectal surgery and for whom a temporary or permanent stoma had been created were involved in this study. Three-dimensional stoma models and three-dimensional face ...

  9. System for generating two-dimensional masks from a three-dimensional model using topological analysis

    Science.gov (United States)

    Schiek, Richard [Albuquerque, NM

    2006-06-20

    A method of generating two-dimensional masks from a three-dimensional model comprises providing a three-dimensional model representing a micro-electro-mechanical structure for manufacture and a description of process mask requirements, reducing the three-dimensional model to a topological description of unique cross sections, and selecting candidate masks from the unique cross sections and the cross section topology. The method further can comprise reconciling the candidate masks based on the process mask requirements description to produce two-dimensional process masks.

  10. Engineering three-dimensional stem cell morphogenesis for the development of tissue models and scalable regenerative therapeutics.

    Science.gov (United States)

    Kinney, Melissa A; Hookway, Tracy A; Wang, Yun; McDevitt, Todd C

    2014-02-01

    The physiochemical stem cell microenvironment regulates the delicate balance between self-renewal and differentiation. The three-dimensional assembly of stem cells facilitates cellular interactions that promote morphogenesis, analogous to the multicellular, heterotypic tissue organization that accompanies embryogenesis. Therefore, expansion and differentiation of stem cells as multicellular aggregates provides a controlled platform for studying the biological and engineering principles underlying spatiotemporal morphogenesis and tissue patterning. Moreover, three-dimensional stem cell cultures are amenable to translational screening applications and therapies, which underscores the broad utility of scalable suspension cultures across laboratory and clinical scales. In this review, we discuss stem cell morphogenesis in the context of fundamental biophysical principles, including the three-dimensional modulation of adhesions, mechanics, and molecular transport and highlight the opportunities to employ stem cell spheroids for tissue modeling, bioprocessing, and regenerative therapies.

  11. Thermosensitive injectable in-situ forming carboxymethyl chitin hydrogel for three-dimensional cell culture.

    Science.gov (United States)

    Liu, Hui; Liu, Jia; Qi, Chao; Fang, Yapeng; Zhang, Lina; Zhuo, Renxi; Jiang, Xulin

    2016-04-15

    Injectable hydrogels have gained great attentions for cell therapy and tissue regeneration as a result of the applications in minimally invasive surgical procedures with the ease of handling and complete filling of the defect area. Here, a novel biodegradable, thermosensitive and injectable carboxymethyl chitin (CMCH) hydrogel was developed for three-dimensional (3D) cell culture. The obtained CMCH solution remained transparent liquid flowing easily at low temperatures and gelled rapidly at 37°C. The gelation time of CMCH hydrogels could be easily tuned by varying temperature and the degree of carboxymethylation, which facilitates the cell encapsulation process at room temperature and in-situ forming hydrogel at body temperature. Moreover, the CMCH-14 hydrogels in PBS buffer remained stable and continuous porous structure and could be degraded in the presence of lysozyme or hyaluronidase. HeLa cells proliferated sustainably and self-assembled to form 3D multicellular spheroids with high cell activity on the surface of CMCH-14 hydrogel. Encapsulation of COS-7 cells within the in-situ forming CMCH hydrogel demonstrated that CMCH hydrogels promoted cell survival and proliferation. In vivo mouse study of the CMCH hydrogels showed good in-situ gel formation and tissue biocompatibility. Thus, the biodegradable thermosensitive injectable CMCH hydrogels hold potential for 3D cell culture and biomedical applications. Biodegradable hydrogels have been widely studied for cell therapy and tissue regeneration. Herein, we report a novel thermosensitive injectable carboxymethyl chitin (CMCH) hydrogel for 3D cell culture, which was synthesized homogeneously from the bioactive natural chitin through the "green" process avoiding using organic solvent. The CMCH solutions exhibited rapid thermoresponsive sol-to-gel phase transition behavior at 37°C with controllable gelation times, which facilitates the cell encapsulation process at room temperature and in-situ forming hydrogel at

  12. Three dimensional mathematical model of tooth for finite element analysis

    Directory of Open Access Journals (Sweden)

    Puškar Tatjana

    2010-01-01

    Full Text Available Introduction. The mathematical model of the abutment tooth is the starting point of the finite element analysis of stress and deformation of dental structures. The simplest and easiest way is to form a model according to the literature data of dimensions and morphological characteristics of teeth. Our method is based on forming 3D models using standard geometrical forms (objects in programmes for solid modeling. Objective. Forming the mathematical model of abutment of the second upper premolar for finite element analysis of stress and deformation of dental structures. Methods. The abutment tooth has a form of a complex geometric object. It is suitable for modeling in programs for solid modeling SolidWorks. After analyzing the literature data about the morphological characteristics of teeth, we started the modeling dividing the tooth (complex geometric body into simple geometric bodies (cylinder, cone, pyramid,.... Connecting simple geometric bodies together or substricting bodies from the basic body, we formed complex geometric body, tooth. The model is then transferred into Abaqus, a computational programme for finite element analysis. Transferring the data was done by standard file format for transferring 3D models ACIS SAT. Results. Using the programme for solid modeling SolidWorks, we developed three models of abutment of the second maxillary premolar: the model of the intact abutment, the model of the endodontically treated tooth with two remaining cavity walls and the model of the endodontically treated tooth with two remaining walls and inserted post. Conclusion Mathematical models of the abutment made according to the literature data are very similar with the real abutment and the simplifications are minimal. These models enable calculations of stress and deformation of the dental structures. The finite element analysis provides useful information in understanding biomechanical problems and gives guidance for clinical research.

  13. [Three dimensional mathematical model of tooth for finite element analysis].

    Science.gov (United States)

    Puskar, Tatjana; Vasiljević, Darko; Marković, Dubravka; Jevremović, Danimir; Pantelić, Dejan; Savić-Sević, Svetlana; Murić, Branka

    2010-01-01

    The mathematical model of the abutment tooth is the starting point of the finite element analysis of stress and deformation of dental structures. The simplest and easiest way is to form a model according to the literature data of dimensions and morphological characteristics of teeth. Our method is based on forming 3D models using standard geometrical forms (objects) in programmes for solid modeling. Forming the mathematical model of abutment of the second upper premolar for finite element analysis of stress and deformation of dental structures. The abutment tooth has a form of a complex geometric object. It is suitable for modeling in programs for solid modeling SolidWorks. After analysing the literature data about the morphological characteristics of teeth, we started the modeling dividing the tooth (complex geometric body) into simple geometric bodies (cylinder, cone, pyramid,...). Connecting simple geometric bodies together or substricting bodies from the basic body, we formed complex geometric body, tooth. The model is then transferred into Abaqus, a computational programme for finite element analysis. Transferring the data was done by standard file format for transferring 3D models ACIS SAT. Using the programme for solid modeling SolidWorks, we developed three models of abutment of the second maxillary premolar: the model of the intact abutment, the model of the endodontically treated tooth with two remaining cavity walls and the model of the endodontically treated tooth with two remaining walls and inserted post. Mathematical models of the abutment made according to the literature data are very similar with the real abutment and the simplifications are minimal. These models enable calculations of stress and deformation of the dental structures. The finite element analysis provides useful information in understanding biomechanical problems and gives guidance for clinical research.

  14. Three-dimensional micro-electrode array for recording dissociated neuronal cultures.

    Science.gov (United States)

    Musick, Katherine; Khatami, David; Wheeler, Bruce C

    2009-07-21

    This work demonstrates the design, fabrication, packaging, characterization, and functionality of an electrically and fluidically active three-dimensional micro-electrode array (3D MEA) for use with neuronal cell cultures. The successful function of the device implies that this basic concept-construction of a 3D array with a layered approach-can be utilized as the basis for a new family of neural electrode arrays. The 3D MEA prototype consists of a stack of individually patterned thin films that form a cell chamber conducive to maintaining and recording the electrical activity of a long-term three-dimensional network of rat cortical neurons. Silicon electrode layers contain a polymer grid for neural branching, growth, and network formation. Along the walls of these electrode layers lie exposed gold electrodes which permit recording and stimulation of the neuronal electrical activity. Silicone elastomer micro-fluidic layers provide a means for loading dissociated neurons into the structure and serve as the artificial vasculature for nutrient supply and aeration. The fluidic layers also serve as insulation for the micro-electrodes. Cells have been shown to survive in the 3D MEA for up to 28 days, with spontaneous and evoked electrical recordings performed in that time. The micro-fluidic capability was demonstrated by flowing in the drug tetrotodoxin to influence the activity of the culture.

  15. Three-dimensional Modeling of Water Quality and Ecology in Narragansett Bay

    Science.gov (United States)

    This report presents the methodology to apply, calibrate, and validate the three-dimensional water quality and ecological model provided with the Environmental Fluid Dynamics Code (EFDC). The required advection and dispersion mechanisms are generated simultaneously by the EFDC h...

  16. A three-dimensional autonomous nonlinear dynamical system modelling equatorial ocean flows

    Science.gov (United States)

    Ionescu-Kruse, Delia

    2018-04-01

    We investigate a nonlinear three-dimensional model for equatorial flows, finding exact solutions that capture the most relevant geophysical features: depth-dependent currents, poleward or equatorial surface drift and a vertical mixture of upward and downward motions.

  17. Probabilistic Three-Dimensional Model of an offshore Monopile Foundation

    DEFF Research Database (Denmark)

    Vahdatirad, Mohammad Javad; Andersen, Lars Vabbersgaard; Ibsen, Lars Bo

    2013-01-01

    shear strength of the soil. Typically, measurement, statistical and model uncertainties are not taken into account in code - based, deterministic design. Hence, current methodology based design may be expensive, but the reliability of the foundation is unknown. Instead, a reliability - based design......When wind turbines are to be installed offshore, expensive geotechnical in-situ tests are carried out at the location of each turbine and only a quantile value (typically the 5% quantile) of the measured strength parameters is used as design parameter , e.g., the 5% quantile value of the undrained...... -element model is established and a stochastic model for the undrained shear strength of the soil is proposed using random field theory. The Mohr – Coulomb constitutive model is used to model the soil behavior. Reliability indices of the monopile are obtained through an advanced reliability method...

  18. Probabilistic Three-Dimensional Model of an offshore Monopile Foundation

    DEFF Research Database (Denmark)

    Vahdatirad, Mohammad Javad; Andersen, Lars Vabbersgaard; Ibsen, Lars Bo

    2013-01-01

    shear strength of the soil. Typically, measurement, statistical and model uncertainties are not taken into account in code - based, deterministic design. Hence, current methodology based design may be expensive, but the reliability of the foundation is unknown. Instead, a reliability - based design...... process based on stochastic analysis of the soil parameters is proposed to obtain an efficient design with known reliability and smaller costs for tests and construction. In this study a monopile foundation in undrained, over -consolidated clay is considered as an example. A three –dimensional (3D) finite...... -element model is established and a stochastic model for the undrained shear strength of the soil is proposed using random field theory. The Mohr – Coulomb constitutive model is used to model the soil behavior. Reliability indices of the monopile are obtained through an advanced reliability method...

  19. Three-Dimensional Modeling of Glass Lens Molding

    DEFF Research Database (Denmark)

    Sarhadi, Ali; Hattel, Jesper Henri; Hansen, Hans Nørgaard

    2015-01-01

    The required accuracy for the final dimensions of the molded lenses in wafer-based precision glass molding as well as the need for elimination of costly experimental trial and error calls for numerical simulations. This study deals with 3D thermo-mechanical modeling of the wafer-based precision...... glass lens molding process. First, a comprehensive 3D thermo-mechanical model of glass is implemented into a FORTRAN user subroutine (UMAT) in the FE program ABAQUS, and the developed FE model is validated with both a well-known sandwich seal test and experimental results of precision molding of several...... glass rings. Afterward, 3D thermo-mechanical modeling of the wafer-based glass lens manufacturing is performed to suggest a proper molding program (i.e., the proper set of process parameters including preset force-time and temperature-time histories) for molding a wafer to a desired dimension...

  20. Semantic description of three-dimensional models of Bologna porches

    Directory of Open Access Journals (Sweden)

    Massimo Ballabeni

    2015-07-01

    Full Text Available The study is part of a broader search coordinated by the Department of Architecture of the University of Bologna, the Cineca and the city of Bologna for the nomination of the city porticoes in the UNESCO World Heritage Site. The study describes, first, the problems and the methods adopted for the survey, the numerical modeling and visualization of the arcades models. In addition, the paper aims to describe a method for the semantic studying of the porticoes architecture and the segmentation of the models. The goal is also to establish an integrated approach to the semantic cataloguing of the Bologna arcades based on historical, material, formal, dimensional and theoretical data, and to make this information easily readable and communicable.

  1. Three-dimensional musculoskeletal modelling of the seated row ...

    African Journals Online (AJOL)

    Adjustments had to be made to the model to solve the forward dynamics simulations; as a result, no muscle forces or contraction values were obtained. This negatively influenced the value of the results as these parameters are important when analysing an exercise. The seated row resistance-training machine's engineered ...

  2. Differentiation patterns of embryonic stem cells in two- versus three-dimensional culture.

    Science.gov (United States)

    Pineda, Emma T; Nerem, Robert M; Ahsan, Tabassum

    2013-01-01

    Pluripotent stem cells are attractive candidates as a cell source for regenerative medicine and tissue engineering therapies. Current methods of differentiation result in low yields and impure populations of target phenotypes, with attempts for improved efficiency often comparing protocols that vary multiple parameters. This basic science study focused on a single variable to understand the effects of two-dimensional (2D) versus three-dimensional (3D) culture on directed differentiation. We compared mouse embryonic stem cells (ESCs) differentiated on collagen type I-coated surfaces (SLIDEs), embedded in collagen type I gels (GELs), and in suspension as embryoid bodies (EBs). For a systematic analysis in these studies, key parameters were kept identical to allow for direct comparison across culture configurations. We determined that all three configurations supported differentiation of ESCs and that the kinetics of differentiation differed greatly for cells cultured in 2D versus 3D. SLIDE cultures induced overall differentiation more quickly than 3D configurations, with earlier expression of cytoskeletal and extracellular matrix proteins. For 3D culture as GELs or EBs, cells clustered similarly, formed complex structures and promoted differentiation towards cardiovascular phenotypes. GEL culture, however, also allowed for contraction of the collagen matrix. For differentiation towards fibroblasts and smooth muscle cells which actively remodel their environment, GEL culture may be particularly beneficial. Overall, this study determined the effects of dimensionality on differentiation and helps in the rational design of protocols to generate phenotypes needed for tissue engineering and regenerative medicine. Copyright © 2013 S. Karger AG, Basel.

  3. Three-Dimensional Culture Reduces Cell Size By Increasing Vesicle Excretion.

    Science.gov (United States)

    Mo, Miaohua; Zhou, Ying; Li, Sen; Wu, Yaojiong

    2018-02-01

    Our previous study has shown that three-dimensional (3D) culture decreases mesenchymal stem cell (MSC) size, leading to enhanced trafficking ability and reduced lung vascular obstructions. However, the underlying mechanisms are unclear. In this study, we proposed that 3D culture reduces MSC size by increasing vesicle excretion. Scanning electron microscope showed that 3D culture markedly increased the amount of membrane-bound vesicles on the cell surface. In consistence, tunable resistive pulse sensing quantifying analysis of vesicles in the culture medium indicated that there were higher levels of vesicles in the 3D culture MSC medium. 3D culture significantly lowered the level of actin polymerization (F-actin), suggestive of lowering actin skeleton tension may facilitate vesicle excretion. Indeed, treatment of MSCs with Cytochalasin D or functional blockade of integrin β1 caused increased vesicle secretion and decreased cell sizes. Thus, our results suggest that 3D culture reduces MSC size by increasing vesicle excretion which is likely mediated by lowering cytoskeleton tension. Stem Cells 2018;36:286-292. © 2017 AlphaMed Press.

  4. Weyl Phases in a Three Dimensional Network Model

    Science.gov (United States)

    Wang, Hailong; Chong, Yidong; theoretical photonics Team

    We study the topological properties of 3D ``Floquet'' band structures, defined using unitary evolution matrices rather than Hamiltonians. Such band structures can be realized in coherent-wave networks or lattices subjected to time-periodic drives. Previously, 2D Floquet band structures have been shown to exhibit unusual topological behaviors such as topologically-nontrivial zero-Chern-number phases. Here, we analyze the Floquet band structure of a 3D network model, which exhibits an Floquet analogue of a Weyl phase. The surface states exhibit topologically-protected ``Fermi'' arcs, similar to the recently-discovered Weyl semi-metals; however, the Weyl points in different quasi-energy gaps are related by a particle-hole symmetry which is unique to the Floquet system. By tuning the coupling parameters of the network, we can drive a transition between conventional insulator, weak topological insulator, and Weyl phases. Finally, we discuss the possibility of realizing this model using custom-designed electromagnetic networks. GRANT: Supported by Singapore National Research Foundation under Grant No. NRFF2012-02.

  5. Comparing Three-Dimensional Geophysical Models of Mount St. Helens

    Science.gov (United States)

    Creager, K. C.; Ulberg, C. W.; Vidale, J. E.; Levander, A.; Kiser, E.; Abers, G. A.; Crosbie, K.; Mann, M. E.; Moran, S. C.; Denlinger, R. P.; Thelen, W. A.; Hansen, S. M.; Schmandt, B.; Schultz, A.; Bowles-martinez, E.; Bedrosian, P.; Peacock, J.; Hill, G.

    2017-12-01

    The iMUSH project integrates active- and passive-source seismic experiments with magnetotelluric (MT) observations and petrology to better understand the structure and dynamics of the Mount St. Helens (MSH) magmatic system from the subducted plate to the surface. The geophysical experiments included a two-year, 70-element broadband array with 10-km station spacing within 50 km of the MSH edifice, 23 shots recorded by geophones at 6000 sites including 900 Nodal stations, and 147 wideband MT stations with 6-km nominal station spacing. We have determined 3-D models of P-wave, S-wave and P/S-wave velocity as well as 3-D electrical resistivity. Our models from independent data sets and methodologies exhibit remarkable similarity. A narrow low-VP and VS anomaly as well as a high VP/VS and conductivity anomaly is well imaged by nearly all methods at about 6-15 km beneath MSH and coincides with a previously inferred magma storage volume. The St. Helens seismic zone (SHZ), which cuts through MSH with a NNW-SSE orientation, coincides with a narrow, vertical, planar zone of high electrical conductivity and low VP from the near surface to 15 km depth where we lose resolution. The continental Moho shows strong reflectivity east of the SHZ, but is weak to non-existent to the west, perhaps because this marks the eastern edge of hydrous mineral stability in the cold mantle wedge. Farther north, a similar high-conductivity feature is imaged along the west Rainer seismic zone. High Vp/Vs and high electrical conductivity extend under the Indian Heaven volcanic field at depths of 5-15 km, potentially associated with regions of partial melt and/or fluids. Mid- to lower-crustal velocities are generally fast to the west of MSH, consistent with the presence of the accreted Siletz terrane, and slow to the east suggesting both a change in composition and higher temperatures. Moderate lower-crustal resistivity is also present to the east, and is consistent with a small degree of partial melt

  6. High Content Imaging (HCI) on Miniaturized Three-Dimensional (3D) Cell Cultures.

    Science.gov (United States)

    Joshi, Pranav; Lee, Moo-Yeal

    2015-12-14

    High content imaging (HCI) is a multiplexed cell staining assay developed for better understanding of complex biological functions and mechanisms of drug action, and it has become an important tool for toxicity and efficacy screening of drug candidates. Conventional HCI assays have been carried out on two-dimensional (2D) cell monolayer cultures, which in turn limit predictability of drug toxicity/efficacy in vivo; thus, there has been an urgent need to perform HCI assays on three-dimensional (3D) cell cultures. Although 3D cell cultures better mimic in vivo microenvironments of human tissues and provide an in-depth understanding of the morphological and functional features of tissues, they are also limited by having relatively low throughput and thus are not amenable to high-throughput screening (HTS). One attempt of making 3D cell culture amenable for HTS is to utilize miniaturized cell culture platforms. This review aims to highlight miniaturized 3D cell culture platforms compatible with current HCI technology.

  7. Multilineage differentiation of rhesus monkey embryonic stem cells in three-dimensional culture systems

    Science.gov (United States)

    Chen, Silvia S.; Revoltella, Roberto P.; Papini, Sandra; Michelini, Monica; Fitzgerald, Wendy; Zimmerberg, Joshua; Margolis, Leonid

    2003-01-01

    In the course of normal embryogenesis, embryonic stem (ES) cells differentiate along different lineages in the context of complex three-dimensional (3D) tissue structures. In order to study this phenomenon in vitro under controlled conditions, 3D culture systems are necessary. Here, we studied in vitro differentiation of rhesus monkey ES cells in 3D collagen matrixes (collagen gels and porous collagen sponges). Differentiation of ES cells in these 3D systems was different from that in monolayers. ES cells differentiated in collagen matrixes into neural, epithelial, and endothelial lineages. The abilities of ES cells to form various structures in two chemically similar but topologically different matrixes were different. In particular, in collagen gels ES cells formed gland-like circular structures, whereas in collagen sponges ES cells were scattered through the matrix or formed aggregates. Soluble factors produced by feeder cells or added to the culture medium facilitated ES cell differentiation into particular lineages. Coculture with fibroblasts in collagen gel facilitated ES cell differentiation into cells of a neural lineage expressing nestin, neural cell adhesion molecule, and class III beta-tubulin. In collagen sponges, keratinocytes facilitated ES cell differentiation into cells of an endothelial lineage expressing factor VIII. Exogenous granulocyte-macrophage colony-stimulating factor further enhanced endothelial differentiation. Thus, both soluble factors and the type of extracellular matrix seem to be critical in directing differentiation of ES cells and the formation of tissue-like structures. Three-dimensional culture systems are a valuable tool for studying the mechanisms of these phenomena.

  8. A Bioengineered Three-Dimensional Cell Culture Platform Integrated with Microfluidics To Address Antimicrobial Resistance in Tuberculosis

    Directory of Open Access Journals (Sweden)

    Magdalena K. Bielecka

    2017-02-01

    Full Text Available Antimicrobial resistance presents one of the most significant threats to human health, with the emergence of totally drug-resistant organisms. We have combined bioengineering, genetically modified bacteria, longitudinal readouts, and fluidics to develop a transformative platform to address the drug development bottleneck, utilizing Mycobacterium tuberculosis as the model organism. We generated microspheres incorporating virulent reporter bacilli, primary human cells, and an extracellular matrix by using bioelectrospray methodology. Granulomas form within the three-dimensional matrix, and mycobacterial stress genes are upregulated. Pyrazinamide, a vital first-line antibiotic for treating human tuberculosis, kills M. tuberculosis in a three-dimensional culture but not in a standard two-dimensional culture or Middlebrook 7H9 broth, demonstrating that antibiotic sensitivity within microspheres reflects conditions in patients. We then performed pharmacokinetic modeling by combining the microsphere system with a microfluidic plate and demonstrated that we can model the effect of dynamic antibiotic concentrations on mycobacterial killing. The microsphere system is highly tractable, permitting variation of cell content, the extracellular matrix, sphere size, the infectious dose, and the surrounding medium with the potential to address a wide array of human infections and the threat of antimicrobial resistance.

  9. Ho:YAG laser: intervertebral disk cell interaction using three-dimensional cell culture system

    Science.gov (United States)

    Sato, Masato; Ishihara, Miya; Arai, Tsunenori; Asazuma, Takashi; Kikuchi, Toshiyuki; Kikuchi, Makoto; Fujikawa, Kyosuke

    2000-06-01

    The purpose of this study is to evaluate the influence on the intervertebral disc cells after laser irradiation using three- dimensional culture system and to clarify the optimum Ho:YAG laser irradiation condition on percutaneous laser disc decompression (PLDD) for lumbar disc herniation. Since the Ho:YAG laser ablation is characterized by water-vapor bubble dynamics, not only thermal effect but also acoustic effect on cell metabolism might occur in the intervertebral disc. We studied the disc cell reaction from the metabolic point of view to investigate photothermal and photoacoustic effects on three-dimensional cultured disc cell. Intervertebral discs were obtained from female 30 Japanese white rabbits weighing about 1 kg. A pulsed Ho:YAG laser (wavelength: 2.1 micrometer, pulse width: about 200 microseconds) was delivered through a 200 micrometer-core diameter single silica glass fiber. We used the Ho:YAG laser irradiation fluence ranging from 60 to approximately 800 J/cm2 at the fiber end. To investigate acoustic effect, the acoustic transducer constructed with polyvinylidene fluoride (PVdF) film and acoustic absorber was used to detect the stress wave. Thermocouple and thermography were used to investigate thermal effect. Concerning damage of plasma membrane and ability of matrix synthesis, thermal effect might mainly affect cell reaction in total energy of 54 J (closed to practically used condition), but in 27 J, acoustic effect might contribute to it. We found that total energy was key parameter among the optimum condition, so that temperature and/or stress wave may influence Ho:YAG laser-disc cell interactions.

  10. Chip-based three-dimensional cell culture in perfused micro-bioreactors.

    Science.gov (United States)

    Gottwald, Eric; Lahni, Brigitte; Thiele, David; Giselbrecht, Stefan; Welle, Alexander; Weibezahn, Karl-Friedrich

    2008-05-21

    We have developed a chip-based cell culture system for the three-dimensional cultivation of cells. The chip is typically manufactured from non-biodegradable polymers, e.g., polycarbonate or polymethyl methacrylate by micro injection molding, micro hot embossing or micro thermo-forming. But, it can also be manufactured from bio-degradable polymers. Its overall dimensions are 0.7 1 x 20 x 20 x 0.7 1 mm (h x w x l). The main features of the chips used are either a grid of up to 1156 cubic micro-containers (cf-chip) each the size of 120-300 x 300 x 300 micron (h x w x l) or round recesses with diameters of 300 micron and a depth of 300 micron (r-chip). The scaffold can house 10 Mio. cells in a three-dimensional configuration. For an optimal nutrient and gas supply, the chip is inserted in a bioreactor housing. The bioreactor is part of a closed sterile circulation loop that, in the simplest configuration, is additionally comprised of a roller pump and a medium reservoir with a gas supply. The bioreactor can be run in perfusion, superfusion, or even a mixed operation mode. We have successfully cultivated cell lines as well as primary cells over periods of several weeks. For rat primary liver cells we could show a preservation of organotypic functions for more than 2 weeks. For hepatocellular carcinoma cell lines we could show the induction of liver specific genes not or only slightly expressed in standard monolayer culture. The system might also be useful as a stem cell cultivation system since first differentiation experiments with stem cell lines were promising.

  11. Embryonic stem cells in scaffold-free three-dimensional cell culture: osteogenic differentiation and bone generation

    Directory of Open Access Journals (Sweden)

    Meyer Ulrich

    2011-07-01

    Full Text Available Abstract Extracorporeal formation of mineralized bone-like tissue is still an unsolved challenge in tissue engineering. Embryonic stem cells may open up new therapeutic options for the future and should be an interesting model for the analysis of fetal organogenesis. Here we describe a technique for culturing embryonic stem cells (ESCs in the absence of artificial scaffolds which generated mineralized miromasses. Embryonic stem cells were harvested and osteogenic differentiation was stimulated by the addition of dexamethasone, ascorbic acid, and ß-glycerolphosphate (DAG. After three days of cultivation microspheres were formed. These spherical three-dimensional cell units showed a peripheral zone consisting of densely packed cell layers surrounded by minerals that were embedded in the extracellular matrix. Alizarine red staining confirmed evidence of mineralization after 10 days of DAG stimulation in the stimulated but not in the control group. Transmission electron microscopy demonstrated scorching crystallites and collagenous fibrils as early indication of bone formation. These extracellular structures resembled hydroxyl apatite-like crystals as demonstrated by distinct diffraction patterns using electron diffraction analysis. The micromass culture technique is an appropriate model to form three-dimensional bone-like micro-units without the need for an underlying scaffold. Further studies will have to show whether the technique is applicable also to pluripotent stem cells of different origin.

  12. Generation of three-dimensional prototype models based on cone beam computed tomography

    International Nuclear Information System (INIS)

    Lambrecht, J.T.; Berndt, D.C.; Zehnder, M.; Schumacher, R.

    2009-01-01

    The purpose of this study was to generate three-dimensional models based on digital volumetric data that can be used in basic and advanced education. Four sets of digital volumetric data were established by cone beam computed tomography (CBCT) (Accuitomo, J. Morita, Kyoto, Japan). Datasets were exported as Dicom formats and imported into Mimics and Magic software programs to separate the different tissues such as nerve, tooth and bone. These data were transferred to a Polyjet 3D Printing machine (Eden 330, Object, Israel) to generate the models. Three-dimensional prototype models of certain limited anatomical structures as acquired volumetrically were fabricated. Generating three-dimensional models based on CBCT datasets is possible. Automated routine fabrication of these models, with the given infrastructure, is too time-consuming and therefore too expensive. (orig.)

  13. Generation of three-dimensional prototype models based on cone beam computed tomography

    Energy Technology Data Exchange (ETDEWEB)

    Lambrecht, J.T.; Berndt, D.C.; Zehnder, M. [University of Basel, Department of Oral Surgery, University Hospital for Oral Surgery, Oral Radiology and Oral Medicine, Basel (Switzerland); Schumacher, R. [University of Applied Sciences Northwestern Switzerland, School of Life Sciences, Institute for Medical and Analytical Technologies, Muttenz (Switzerland)

    2009-03-15

    The purpose of this study was to generate three-dimensional models based on digital volumetric data that can be used in basic and advanced education. Four sets of digital volumetric data were established by cone beam computed tomography (CBCT) (Accuitomo, J. Morita, Kyoto, Japan). Datasets were exported as Dicom formats and imported into Mimics and Magic software programs to separate the different tissues such as nerve, tooth and bone. These data were transferred to a Polyjet 3D Printing machine (Eden 330, Object, Israel) to generate the models. Three-dimensional prototype models of certain limited anatomical structures as acquired volumetrically were fabricated. Generating three-dimensional models based on CBCT datasets is possible. Automated routine fabrication of these models, with the given infrastructure, is too time-consuming and therefore too expensive. (orig.)

  14. Selected contribution: a three-dimensional model for assessment of in vitro toxicity in balaena mysticetus renal tissue

    Science.gov (United States)

    Goodwin, T. J.; Coate-Li, L.; Linnehan, R. M.; Hammond, T. G.

    2000-01-01

    This study established two- and three-dimensional renal proximal tubular cell cultures of the endangered species bowhead whale (Balaena mysticetus), developed SV40-transfected cultures, and cloned the 61-amino acid open reading frame for the metallothionein protein, the primary binding site for heavy metal contamination in mammals. Microgravity research, modulations in mechanical culture conditions (modeled microgravity), and shear stress have spawned innovative approaches to understanding the dynamics of cellular interactions, gene expression, and differentiation in several cellular systems. These investigations have led to the creation of ex vivo tissue models capable of serving as physiological research analogs for three-dimensional cellular interactions. These models are enabling studies in immune function, tissue modeling for basic research, and neoplasia. Three-dimensional cellular models emulate aspects of in vivo cellular architecture and physiology and may facilitate environmental toxicological studies aimed at elucidating biological functions and responses at the cellular level. Marine mammals occupy a significant ecological niche (72% of the Earth's surface is water) in terms of the potential for information on bioaccumulation and transport of terrestrial and marine environmental toxins in high-order vertebrates. Few ex vivo models of marine mammal physiology exist in vitro to accomplish the aforementioned studies. Techniques developed in this investigation, based on previous tissue modeling successes, may serve to facilitate similar research in other marine mammals.

  15. In vitro ovarian cancer model based on three-dimensional agarose hydrogel

    Directory of Open Access Journals (Sweden)

    Guojie Xu

    2014-01-01

    Full Text Available To establish a typical tumor model of ovarian cancer which may be more representative and reliable than traditional monolayer culture and pellet, agarose was used as cell vehicle to engineering tumor. Selection of agarose is based on its successful application in tissue engineering with both amenable mechanical and biological properties. In this study, ovarian cancer cell line SKOV3 was encapsulated in agarose hydrogel with cell aggregates and two-dimensional culture as controls. In vitro cell proliferation was assessed by MTT and cell viability was examined at time points of 2, 4, and 6 days. The expression of tumor malignancy markers including matrix metalloproteinase 2, matrix metalloproteinase 9, hypoxia-inducible factor-1α, and vascular endothelial growth factor–A was assessed by real-time polymerase chain reaction. The results showed that cells proliferated more rapidly in three-dimensional agarose culture than controls. Furthermore, upregulation of matrix metalloproteinase 9 and matrix metalloproteinase 2 activity and increased expression of vascular endothelial growth factor–A and hypoxia-inducible factor-1α were shown in agarose-engineered tumors. All the evidences demonstrated that agarose may provide a more favorable environment for cancer cell growth, mimicking the in vivo environment for tumor generation. The novel in vitro tumor model may be useful for the further investigation of anticancer therapeutics.

  16. Development Report on the Idaho National Laboratory Sitewide Three-Dimensional Aquifer Model

    Energy Technology Data Exchange (ETDEWEB)

    Thomas R. Wood; Catherine M. Helm-Clark; Hai Huang; Swen Magnuson; Travis McLing; Brennon Orr; Michael J. Rohe; Mitchell A. Plummer; Robert Podgorney; Erik Whitmore; Michael S. Roddy

    2007-09-01

    A sub-regional scale, three-dimensional flow model of the Snake River Plain Aquifer was developed to support remediation decisions for Waste Area Group 10, Operable Unit 10 08 at the Idaho National Laboratory (INL) Site. This model has been calibrated primarily to water levels and secondarily to groundwater velocities interpreted from stable isotope disequilibrium studies and the movement of anthropogenic contaminants in the aquifer from facilities at the INL. The three-dimensional flow model described in this report is one step in the process of constructing a fully three-dimensional groundwater flow and contaminant transport model as prescribed in the Idaho National Engineering and Environmental Laboratory Operable Unit 10-08 Sitewide Groundwater Model Work Plan. An updated three-dimensional hydrogeologic conceptual model is presented along with the geologic basis for the conceptual model. Sediment-dominated three-dimensional volumes were used to represent the geology and constrain groundwater flow as part of the conceptual model. Hydrological, geochemical, and geological data were summarized and evaluated to infer aquifer behavior. A primary observation from development and evaluation of the conceptual model was that relative to flow on a regional scale, the aquifer can be treated with steady-state conditions. Boundary conditions developed for the three-dimensional flow model are presented along with inverse simulations that estimate parameterization of hydraulic conductivity. Inverse simulations were performed using the pilot-point method to estimate permeability distributions. Thermal modeling at the regional aquifer scale and at the sub-regional scale using the inverted permeabilities is presented to corroborate the results of the flow model. The results from the flow model show good agreement with simulated and observed water levels almost always within 1 meter. Simulated velocities show generally good agreement with some discrepancies in an interpreted low

  17. Three-dimensional conceptual model for the Hanford Site unconfined aquifer system, FY 1993 status report

    International Nuclear Information System (INIS)

    Thorne, P.D.; Chamness, M.A.; Spane, F.A. Jr.; Vermeul, V.R.; Webber, W.D.

    1993-12-01

    The ground water underlying parts of the Hanford Site (Figure 1.1) contains radioactive and chemical contaminants at concentrations exceeding regulatory standards (Dresel et al. 1993). The Hanford Site Ground-Water Surveillance Project, operated by Pacific Northwest Laboratory (PNL), is responsible for monitoring the movement of these contaminants to ensure that public health and the environment are protected. To support the monitoring effort, a sitewide three-dimensional ground-water flow model is being developed. This report provides an update on the status of the conceptual model that will form the basis for constructing a numerical three-dimensional flow model for, the site. Thorne and Chamness (1992) provide additional information on the initial development of the three-dimensional conceptual model

  18. Creating physically-based three-dimensional microstructures: Bridging phase-field and crystal plasticity models.

    Energy Technology Data Exchange (ETDEWEB)

    Lim, Hojun [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Owen, Steven J. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Abdeljawad, Fadi F. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Hanks, Byron [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Battaile, Corbett Chandler [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2015-09-01

    In order to better incorporate microstructures in continuum scale models, we use a novel finite element (FE) meshing technique to generate three-dimensional polycrystalline aggregates from a phase field grain growth model of grain microstructures. The proposed meshing technique creates hexahedral FE meshes that capture smooth interfaces between adjacent grains. Three dimensional realizations of grain microstructures from the phase field model are used in crystal plasticity-finite element (CP-FE) simulations of polycrystalline a -iron. We show that the interface conformal meshes significantly reduce artificial stress localizations in voxelated meshes that exhibit the so-called "wedding cake" interfaces. This framework provides a direct link between two mesoscale models - phase field and crystal plasticity - and for the first time allows mechanics simulations of polycrystalline materials using three-dimensional hexahedral finite element meshes with realistic topological features.

  19. Three-dimensional semi-idealized model for tidal motion in tidal estuaries

    NARCIS (Netherlands)

    Kumar, M.; Schuttelaars, H.M.; Roos, P.C.; Möller, M.

    2015-01-01

    In this paper, a three-dimensional semi-idealized model for tidal motion in a tidal estuary of arbitrary shape and bathymetry is presented. This model aims at bridging the gap between idealized and complex models. The vertical profiles of the velocities are obtained analytically in terms of the

  20. Accounting for the influence of the Earth's sphericity in three-dimensional density modelling

    Science.gov (United States)

    Martyshko, P. S.; Byzov, D. D.; Chernoskutov, A. I.

    2017-11-01

    A method for transformation of the three-dimensional regional "flat" density models of the Earth's crust and upper mantle to the "spherical" models and vice versa is proposed. A computation algorithm and a method of meaningful comparison of the vertical component of the gravity field of both models are presented.

  1. Compensation in Root Water Uptake Models Combined with Three-Dimensional Root Length Density Distribution

    NARCIS (Netherlands)

    Heinen, M.

    2014-01-01

    A three-dimensional root length density distribution function is introduced that made it possible to compare two empirical uptake models with a more mechanistic uptake model. Adding a compensation component to the more empirical model resulted in predictions of root water uptake distributions

  2. Three-dimensional culture of dental pulp stem cells in direct contact to tricalcium silicate cements.

    Science.gov (United States)

    Widbiller, M; Lindner, S R; Buchalla, W; Eidt, A; Hiller, K-A; Schmalz, G; Galler, K M

    2016-03-01

    Calcium silicate cements are biocompatible dental materials applicable in contact with vital tissue. The novel tricalcium silicate cement Biodentine™ offers properties superior to commonly used mineral trioxide aggregate (MTA). Objective of this study was to evaluate its cytocompatibility and ability to induce differentiation and mineralization in three-dimensional cultures of dental pulp stem cells after direct contact with the material. Test materials included a new tricalcium silicate (Biodentine™, Septodont, Saint-Maur-des-Fossés, France), MTA (ProRoot® MTA, DENSPLY Tulsa Dental Specialities, Johnson City, TN, USA), glass ionomer (Ketac™ Molar Aplicap™, 3M ESPE, Seefeld, Germany), human dentin disks and polystyrene. Magnetic activated cell sorting for to the surface antigen STRO-1 was performed to gain a fraction enriched with mesenchymal stem cells. Samples were allowed to set and dental pulp stem cells in collagen carriers were placed on top. Scanning electron microscopy of tricalcium silicate cement surfaces with and without cells was conducted. Cell viability was measured for 14 days by MTT assay. Alkaline phosphatase activity was evaluated (days 3, 7, and 14) and expression of mineralization-associated genes (COL1A1, ALP, DSPP, and RUNX2) was quantified by real-time quantitative PCR. Nonparametric statistical analysis for cell viability and alkaline phosphatase data was performed to compare different materials as well as time points (Mann-Whitney U test, α = 0.05). Cell viability was highest on tricalcium silicate cement, followed by MTA. Viability on glass ionomer cement and dentin disks was significantly lower. Alkaline phosphatase activity was lower in cells on new tricalcium silicate cement compared to MTA, whereas expression patterns of marker genes were alike. Increased cell viability and similar levels of mineralization-associated gene expression in three-dimensional cell cultures on the novel tricalcium silicate cement and mineral

  3. Ground-water solute transport modeling using a three-dimensional scaled model

    International Nuclear Information System (INIS)

    Crider, S.S.

    1987-01-01

    Scaled models are used extensively in current hydraulic research on sediment transport and solute dispersion in free surface flows (rivers, estuaries), but are neglected in current ground-water model research. Thus, an investigation was conducted to test the efficacy of a three-dimensional scaled model of solute transport in ground water. No previous results from such a model have been reported. Experiments performed on uniform scaled models indicated that some historical problems (e.g., construction and scaling difficulties; disproportionate capillary rise in model) were partly overcome by using simple model materials (sand, cement and water), by restricting model application to selective classes of problems, and by physically controlling the effect of the model capillary zone. Results from these tests were compared with mathematical models. Model scaling laws were derived for ground-water solute transport and used to build a three-dimensional scaled model of a ground-water tritium plume in a prototype aquifer on the Savannah River Plant near Aiken, South Carolina. Model results compared favorably with field data and with a numerical model. Scaled models are recommended as a useful additional tool for prediction of ground-water solute transport

  4. Three-Dimensional Model Test Study of Xbloc Armoured Breakwaters at Punta Catalina, Dominican Republic

    DEFF Research Database (Denmark)

    Røge, Mads Sønderstrup; Andersen, Thomas Lykke

    The present report presents results from a three-dimensional model test study carried out at Aalborg University in the period June 2015 – August 2015. The objectives of the model tests were to study the stability of the Xbloc armoured breakwaters at Punta Catalina under short-crested wave attack...

  5. A Fully Implicit Model of the Three-Dimensional Thermohaline Ocean Circulation

    NARCIS (Netherlands)

    Dijkstra, Henk A.; Oksuzoglu, Hakan; Wubs, Fred. W.; Botta, Eugen F.F.

    2001-01-01

    In this paper, a fully implicit numerical model of the three-dimensional thermohaline ocean circulation is presented. With this numerical model it is possible to follow branches of steady states in parameter space and monitor their linear stability. Also, transient flows can be computed allowing

  6. The Role of Peer Tutoring: Steps to Describing a Three-Dimensional Model.

    Science.gov (United States)

    Davis, Kevin

    A comprehensive, three-dimensional model of peer tutoring, constructed by gathering current theories and research and locating them on a dynamic continuum of the tutoring process, allows researchers to break new ground in tutor research and might eventually offer a new heuristic for training peer tutors. The first axis in the model, the focus…

  7. Three-dimensional in vitro tumor models for cancer research and drug evaluation.

    Science.gov (United States)

    Xu, Xian; Farach-Carson, Mary C; Jia, Xinqiao

    2014-11-15

    Cancer occurs when cells acquire genomic instability and inflammation, produce abnormal levels of epigenetic factors/proteins and tumor suppressors, reprogram the energy metabolism and evade immune destruction, leading to the disruption of cell cycle/normal growth. An early event in carcinogenesis is loss of polarity and detachment from the natural basement membrane, allowing cells to form distinct three-dimensional (3D) structures that interact with each other and with the surrounding microenvironment. Although valuable information has been accumulated from traditional in vitro studies in which cells are grown on flat and hard plastic surfaces (2D culture), this culture condition does not reflect the essential features of tumor tissues. Further, fundamental understanding of cancer metastasis cannot be obtained readily from 2D studies because they lack the complex and dynamic cell-cell communications and cell-matrix interactions that occur during cancer metastasis. These shortcomings, along with lack of spatial depth and cell connectivity, limit the applicability of 2D cultures to accurate testing of pharmacologically active compounds, free or sequestered in nanoparticles. To recapitulate features of native tumor microenvironments, various biomimetic 3D tumor models have been developed to incorporate cancer and stromal cells, relevant matrix components, and biochemical and biophysical cues, into one spatially and temporally integrated system. In this article, we review recent advances in creating 3D tumor models employing tissue engineering principles. We then evaluate the utilities of these novel models for the testing of anticancer drugs and their delivery systems. We highlight the profound differences in responses from 3D in vitro tumors and conventional monolayer cultures. Overall, strategic integration of biological principles and engineering approaches will both improve understanding of tumor progression and invasion and support discovery of more personalized

  8. Influence of flow conditions and matrix coatings on growth and differentiation of three-dimensionally cultured rat hepatocytes.

    Science.gov (United States)

    Fiegel, Henning C; Havers, Joerg; Kneser, Ulrich; Smith, Molly K; Moeller, Tim; Kluth, Dietrich; Mooney, David J; Rogiers, Xavier; Kaufmann, Peter M

    2004-01-01

    Maintenance of liver-specific function of hepatocytes in culture is still difficult. Improved culture conditions may enhance the cell growth and function of cultured cells. We investigated the effect of three-dimensional culture under flow conditions, and the influence of surface modifications in hepatocyte cultures. Hepatocytes were harvested from Lewis rats. Cells were cultured on three-dimensional polymeric poly-lactic-co-glycolic acid (PLGA) matrices in static culture, or in a pulsatile flow-bioreactor system. Different surface modifications of matrices were investigated: coating with collagen I, collagen IV, laminin, or fibronectin; or uncoated matrix. Hepatocyte numbers, DNA content, and albumin secretion rate were assessed over the observation period. Culture under flow condition significantly enhanced cell numbers. An additional improvement of this effect was observed, when matrix coating was used. Cellular function also showed a significant increase (4- to 5-fold) under flow conditions when compared with static culture. Our data showed that culture under flow conditions improves cell number, and strongly enhances cellular function. Matrix modification by coating with extracellular matrix showed overall an additive stimulatory effect. Our conclusion is that combining three-dimensional culture under flow conditions and using matrix modification significantly improves culture conditions and is therefore attractive for the development of successful culture systems for hepatocytes.

  9. The use of frequency resolution in echolocation for modeling three dimensional environments.

    Science.gov (United States)

    Huebschman, Benjamin D

    2010-12-01

    Bats use echolocation to navigate three dimensional obstacles while locating, identifying, and engaging targets. A theory is offered of image processing during the search and navigation phase of echolocation that uses Doppler frequency shifts. The information in frequency changes across the angle of elevation can be used to generate a three dimensional model of the environment when combined with the timing and the relative amplitude of the returned signals. The mathematics of frequency shifts for an emitter traveling at a large fraction of the velocity of propagation (c) is presented. Reported behavior that can be explained by this phenomenon is discussed.

  10. A three-dimensional breakdown model of SOI lateral power transistors with a circular layout

    International Nuclear Information System (INIS)

    Guo Yufeng; Wang Zhigong; Sheu Gene

    2009-01-01

    This paper presents an analytical three-dimensional breakdown model of SOI lateral power devices with a circular layout. The Poisson equation is solved in cylindrical coordinates to obtain the radial surface potential and electric field distributions for both fully- and partially-depleted drift regions. The breakdown voltages for N + N and P + N junctions are derived and employed to investigate the impact of cathode region curvature. A modified RESURF criterion is proposed to provide a design guideline for optimizing the breakdown voltage and doping concentration in the drift region in three dimensional space. The analytical results agree well with MEDICI simulation results and experimental data from earlier publications. (semiconductor devices)

  11. Time-domain Electromagnetic Exploration of Salt Islands: Three-dimensional Modelling and Field Results

    Science.gov (United States)

    Bauer-Gottwein, P.; . Gondwe, B. R. N.; Christiansen, L.; Kgotlhang, L.; Herckenrath, D.; Zimmermann, S.

    2009-04-01

    The time-domain electromagnetic method (TDEM) has been widely used in groundwater exploration and geological mapping applications. TDEM measures the subsurface electrical conductivity, which is strongly correlated with groundwater salinity. TDEM thus offers cheap and non-invasive ways to map saltwater intrusion and groundwater salinization. Typically, TDEM data is interpreted using 1D layered-earth models of the subsurface. However, most saltwater intrusion and groundwater salinization phenomena produce eminently three-dimensional anomalies. To fully exploit the information of TDEM data in this context, three-dimensional modeling of the TDEM response is required. We present a finite-element solution for three-dimensional forward modeling of TDEM responses from arbitrary subsurface electrical conductivity distributions. As an application example, the groundwater salinization process on islands in the Okavango Delta is simulated using a variable-density flow and salinity transport model. The transport model outputs are subsequently converted to TDEM responses using the 3D TDEM forward code. A field dataset of ground-based and airborne TDEM data from a selected Okavango Delta island is presented. The TDEM field data cannot be interpreted in terms of 1D layered-earth models, because of the strongly three-dimensional nature of the salinity anomaly under the island. A 3D interpretation of the field data allows detailed and consistent mapping of this anomaly.

  12. Three-dimensional virtual model and animation of penile lengthening surgery.

    Science.gov (United States)

    Wang, Ruiheng; Yang, Dongyun; Li, Shirong

    2012-10-01

    Three-dimensional digital models, animations, and simulations have been used in the plastic surgical field for surgical education and training and patient education. In penile lengthening surgery, proper patient selection and well-designed surgical interventions are necessary; however, no such surgical or patient education tool exists. Using magnetic resonance images as references, a preliminary three-dimensional digital model of the penis with its adjacent structures was constructed using Amira 5. This preliminary model was imported into Maya 2009, a computer modeling and animation software program, for processing to correct many defects. The refined model was used to create digital animation of penile lengthening surgery, including ordered steps of the procedure, using Maya 2009 and Adobe After Effects CS4. A three-dimensional digital animation was created to illustrate penile lengthening surgery. All major surgical steps were demonstrated, including exposure, transversal incision of the fundiform ligament, partial division and release of the suspensory ligament. Three-dimensional digital models and animations of penile lengthening surgery may serve as resources for patient education to facilitate patient selection and resident education outside the operating room. Copyright © 2012 British Association of Plastic, Reconstructive and Aesthetic Surgeons. Published by Elsevier Ltd. All rights reserved.

  13. Bone formation by three-dimensional stromal osteoblast culture in biodegradable polymer scaffolds

    Science.gov (United States)

    Ishaug, S. L.; Crane, G. M.; Miller, M. J.; Yasko, A. W.; Yaszemski, M. J.; Mikos, A. G.; McIntire, L. V. (Principal Investigator)

    1997-01-01

    Bone formation was investigated in vitro by culturing stromal osteoblasts in three-dimensional (3-D), biodegradable poly(DL-lactic-co-glycolic acid) foams. Three polymer foam pore sizes, ranging from 150-300, 300-500, and 500-710 microns, and two different cell seeding densities, 6.83 x 10(5) cells/cm2 and 22.1 x 10(5) cells/cm2, were examined over a 56-day culture period. The polymer foams supported the proliferation of seeded osteoblasts as well as their differentiated function, as demonstrated by high alkaline phosphatase activity and deposition of a mineralized matrix by the cells. Cell number, alkaline phosphatase activity, and mineral deposition increased significantly over time for all the polymer foams. Osteoblast foam constructs created by seeding 6.83 x 10(5) cells/cm2 on foams with 300-500 microns pores resulted in a cell density of 4.63 x 10(5) cells/cm2 after 1 day in culture; they had alkaline phosphatase activities of 4.28 x 10(-7) and 2.91 x 10(-6) mumol/cell/min on Days 7 and 28, respectively; and they had a cell density that increased to 18.7 x 10(5) cells/cm2 by Day 56. For the same constructs, the mineralized matrix reached a maximum penetration depth of 240 microns from the top surface of the foam and a value of 0.083 mm for mineralized tissue volume per unit of cross sectional area. Seeding density was an important parameter for the constructs, but pore size over the range tested did not affect cell proliferation or function. This study suggests the feasibility of using poly(alpha-hydroxy ester) foams as scaffolding materials for the transplantation of autogenous osteoblasts to regenerate bone tissue.

  14. Engineering of microscale three-dimensional pancreatic islet models in vitro and their biomedical applications.

    Science.gov (United States)

    Gao, Bin; Wang, Lin; Han, Shuang; Pingguan-Murphy, Belinda; Zhang, Xiaohui; Xu, Feng

    2016-08-01

    Diabetes now is the most common chronic disease in the world inducing heavy burden for the people's health. Based on this, diabetes research such as islet function has become a hot topic in medical institutes of the world. Today, in medical institutes, the conventional experiment platform in vitro is monolayer cell culture. However, with the development of micro- and nano-technologies, several microengineering methods have been developed to fabricate three-dimensional (3D) islet models in vitro which can better mimic the islet of pancreases in vivo. These in vitro islet models have shown better cell function than monolayer cells, indicating their great potential as better experimental platforms to elucidate islet behaviors under both physiological and pathological conditions, such as the molecular mechanisms of diabetes and clinical islet transplantation. In this review, we present the state-of-the-art advances in the microengineering methods for fabricating microscale islet models in vitro. We hope this will help researchers to better understand the progress in the engineering 3D islet models and their biomedical applications such as drug screening and islet transplantation.

  15. Production of ordered collagen matrices for three-dimensional cell culture.

    Science.gov (United States)

    Bessea, Laurence; Coulomb, Bernard; Lebreton-Decoster, Corinne; Giraud-Guille, Marie-Madeleine

    2002-01-01

    The aim of this study was to produce collagen gels with controlled fibrillar order as matrices for cell culture. Their structural characterization and colonization by human dermal fibroblasts arc presently reported. Ordered matrices are obtained by using the property of type I collagen monomers to self-assemble in liquid crystalline arrays by slow evaporation of acidic solutions at high concentrations. Induction of fibrillogenesis concomittent with the stabilization of the supramolecular order is then obtained, within petri dishes, by gelation of the viscous preparations under ammoniac vapours. For comparison, dermal equivalents, in which collagen compaction depends on fibroblasts contraction, are made according to the method of Bell et al. (Proc. Natl. Acad. Sci. 76(3) (1979) 1274). The fibrillar arrangement of the collagen network in the samples is determined by polarizing optical microscopy and by transmission electron microscopy. Whereas dermal equivalents exhibit heterogeneous distributions of fibrils, two differents types of order are obtained in the stabilized liquid crystalline collagen samples, namely aligned, i.e. nematic, at 20 mg/ml, or crimped, i.e. precholesteric, at 40 mg/ml. The morphology and behaviour of fibroblasts seeded on the surface of the matrices are analysed from day 1 to day 21. The cells are viable, proliferate at the surface of ordered matrices and migrate up to 400 microm in depth. Production of concentrated and ordered collagen matrices provides new perspectives to study the behaviour of cells in a valorized three-dimensional context where the fibrillar organization becomes close to in vivo situations.

  16. Two-dimensional and three-dimensional models for studying atherosclerosis pathogenesis induced by periodontopathogenic microorganisms.

    Science.gov (United States)

    Gualtero, D F; Lafaurie, G I; Fontanilla, M R

    2018-02-01

    Epidemiological studies have established a clinical association between periodontal disease and atherosclerosis. Bacteremia and endotoxemia episodes in patients with periodontitis appear to link these two diseases by inducing a body-wide production of cardiovascular markers. The presence of oral bacteria in atherosclerotic lesions in patients with periodontitis suggests that bacteria, or their antigenic components, induce alterations in the endothelium associated with atherosclerosis. Therefore, a causal mechanism explaining the association between both diseases can be constructed using in vitro models. This review presents current experimental approaches based on in vitro cell models used to shed light on the mechanism by which periodontal pathogenic microorganisms, and their antigenic components, induce proatherosclerotic endothelial activity. Monolayer cultures of endothelial vascular or arterial cells have been used to assess periodontal pathogenic bacteria and their antigenic compounds and endothelial activation. However, these models are not capable of reflecting the physiological characteristics of the endothelium inside vascularized tissue. Therefore, the shift from two-dimensional (2D) cellular models toward three-dimensional (3D) models of endothelial cells resembling an environment close to the physiological environment of the endothelial cell within the endothelium is useful for evaluating the physiological relevance of results regarding the endothelial dysfunction induced by periodontopathogens that are currently obtained from 2D models. The use of in vitro 3D cellular models can also be relevant to the search for therapeutic agents for chronic inflammatory diseases such as atherosclerosis. Here, we present some strategies for the assembly of 3D cultures with endothelial cells, which is useful for the study of periodontopathogen-mediated disease. © 2017 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  17. Osteogenic differentiation of mesenchymal stromal cells in two-dimensional and three-dimensional cultures without animal serum.

    Science.gov (United States)

    Castrén, Eeva; Sillat, Tarvo; Oja, Sofia; Noro, Ariel; Laitinen, Anita; Konttinen, Yrjö T; Lehenkari, Petri; Hukkanen, Mika; Korhonen, Matti

    2015-09-07

    Bone marrow-derived mesenchymal stromal cells (MSCs) have been intensely studied for the purpose of developing solutions for clinical tissue engineering. Autologous MSCs can potentially be used to replace tissue defects, but the procedure also carries risks such as immunization and xenogeneic infection. Replacement of the commonly used fetal calf serum (FCS) with human platelet lysate and plasma (PLP) to support cell growth may reduce some of these risks. Altered media could, however, influence stem cell differentiation and we address this experimentally. We examined human MSC differentiation into the osteoblast lineage using in vitro two- and three-dimensional cultures with PLP or FCS as cell culture medium supplements. Differentiation was followed by quantitative polymerase chain reaction, and alkaline phosphatase activity, matrix formation and matrix calcium content were quantified. Three-dimensional culture, where human MSCs were grown on collagen sponges, markedly stimulated osteoblast differentiation; a fourfold increase in calcium deposition could be observed in both PLP and FCS groups. PLP-grown cells showed robust osteogenic differentiation both in two- and three-dimensional MSC cultures. The calcium content of the matrix in the two-dimensional PLP group at day 14 was 2.2-fold higher in comparison to the FCS group (p cultures, cellular proliferation appeared to decrease during later stages of differentiation, while in the FCS group the number of cells increased throughout the experiment. In three-dimensional experiments, the PLP and FCS groups behaved more congruently, except for the alkaline phosphatase activity and mRNA levels which were markedly increased by PLP. Human PLP was at least equal to FCS in supporting osteogenic differentiation of human MSCs in two- and three-dimensional conditions; however, proliferation was inferior. As PLP is free of animal components, and thus represents reduced risk for xenogeneic infection, its use for human MSC

  18. Fusing range and intensity images for generating dense models of three-dimensional environments

    DEFF Research Database (Denmark)

    Ellekilde, Lars-Peter; Miró, Jaime Valls; Dissanayake., Gamini

    This paper presents a novel strategy for the construction of dense three-dimensional environment models by combining images from a conventional camera and a range imager. Ro- bust data association is ?rst accomplished by exploiting the Scale Invariant Feature Transformation (SIFT) technique...

  19. Three-dimensional modelling of thrust-controlled foreland basin stratigraphy

    NARCIS (Netherlands)

    Clevis, Q. (Quintijn)

    2003-01-01

    In this thesis a tectono-sedimentary forward model has been presented, devised to simulate sediment erosion and deposition in a coupled drainage basin - foreland system, as well as accumulating a three-dimensional stratigraphy. The aim of the research was to investigate which features recorded in

  20. and three-dimensional models for analysis of optical absorption in ...

    Indian Academy of Sciences (India)

    Unknown

    Goldberg et al 1975; Kam and Parkinson 1982; Baglio et al 1982, 1983; Oritz 1995; Li et al 1996) has been carried out on WS2, there is no detailed analysis of the absorption spectra obtained from the single crystals of WS2 on the basis of two- and three-dimensional models. We have therefore carried out this study and the.

  1. Articular contact in a three-dimensional model of the knee

    NARCIS (Netherlands)

    Blankevoort, L.; Kuiper, J. H.; Huiskes, R.; Grootenboer, H. J.

    1991-01-01

    This study is aimed at the analysis of articular contact in a three-dimensional mathematical model of the human knee-joint. In particular the effect of articular contact on the passive motion characteristics is assessed in relation to experimentally obtained joint kinematics. Two basically different

  2. On two-dimensionalization of three-dimensional turbulence in shell models

    DEFF Research Database (Denmark)

    Chakraborty, Sagar; Jensen, Mogens Høgh; Sarkar, A.

    2010-01-01

    Applying a modified version of the Gledzer-Ohkitani-Yamada (GOY) shell model, the signatures of so-called two-dimensionalization effect of three-dimensional incompressible, homogeneous, isotropic fully developed unforced turbulence have been studied and reproduced. Within the framework of shell...

  3. Three-dimensional dynamic models of subducting plate-overriding plate-upper mantle interaction

    NARCIS (Netherlands)

    Meyer, Clio; Schellart, W. P.

    2013-01-01

    We present fully dynamic generic three-dimensional laboratory models of progressive subduction with an overriding plate and a weak subduction zone interface. Overriding plate thickness (TOP) is varied systematically (in the range 0-2.5 cm scaling to 0-125 km) to investigate its effect on subduction

  4. Two-and three-dimensional models for analysis of optical absorption ...

    Indian Academy of Sciences (India)

    The optical energy gaps of WS2 single crystal were determined from the analysis of the absorption spectrum near the fundamental absorption edge at room temperature using light parallel to -axis incident normally on the basal plane. On the basis of two- and three-dimensional models it was found that both direct and ...

  5. Cytopede: a three-dimensional tool for modeling cell motility on a flat surface.

    Science.gov (United States)

    Herant, Marc; Dembo, Micah

    2010-12-01

    When cultured on flat surfaces, fibroblasts and many other cells spread to form thin lamellar sheets. Motion then occurs by extension of the sheet at the leading edge and retraction at the trailing edge. Comprehensive quantitative models of these phenomena have so far been lacking and to address this need, we have designed a three-dimensional code called Cytopede specialized for the simulation of the mechanical and signaling behavior of plated cells. Under assumptions by which the cytosol and the cytoskeleton are treated from a continuum mechanical perspective, Cytopede uses the finite element method to solve mass and momentum equations for each phase, and thus determine the time evolution of cellular models. We present the physical concepts that underlie Cytopede together with the algorithms used for their implementation. We then validate the approach by a computation of the spread of a viscous sessile droplet. Finally, to exemplify how Cytopede enables the testing of ideas about cell mechanics, we simulate a simple fibroblast model. We show how Cytopede allows computation, not only of basic characteristics of shape and velocity, but also of maps of cell thickness, cytoskeletal density, cytoskeletal flow, and substratum tractions that are readily compared with experimental data.

  6. Three-dimensional tissue assemblies: novel models for the study of Salmonella enterica serovar Typhimurium pathogenesis

    Science.gov (United States)

    Nickerson, C. A.; Goodwin, T. J.; Terlonge, J.; Ott, C. M.; Buchanan, K. L.; Uicker, W. C.; Emami, K.; LeBlanc, C. L.; Ramamurthy, R.; Clarke, M. S.; hide

    2001-01-01

    The lack of readily available experimental systems has limited knowledge pertaining to the development of Salmonella-induced gastroenteritis and diarrheal disease in humans. We used a novel low-shear stress cell culture system developed at the National Aeronautics and Space Administration in conjunction with cultivation of three-dimensional (3-D) aggregates of human intestinal tissue to study the infectivity of Salmonella enterica serovar Typhimurium for human intestinal epithelium. Immunohistochemical characterization and microscopic analysis of 3-D aggregates of the human intestinal epithelial cell line Int-407 revealed that the 3-D cells more accurately modeled human in vivo differentiated tissues than did conventional monolayer cultures of the same cells. Results from infectivity studies showed that Salmonella established infection of the 3-D cells in a much different manner than that observed for monolayers. Following the same time course of infection with Salmonella, 3-D Int-407 cells displayed minimal loss of structural integrity compared to that of Int-407 monolayers. Furthermore, Salmonella exhibited significantly lower abilities to adhere to, invade, and induce apoptosis of 3-D Int-407 cells than it did for infected Int-407 monolayers. Analysis of cytokine expression profiles of 3-D Int-407 cells and monolayers following infection with Salmonella revealed significant differences in expression of interleukin 1alpha (IL-1alpha), IL-1beta, IL-6, IL-1Ra, and tumor necrosis factor alpha mRNAs between the two cultures. In addition, uninfected 3-D Int-407 cells constitutively expressed higher levels of transforming growth factor beta1 mRNA and prostaglandin E2 than did uninfected Int-407 monolayers. By more accurately modeling many aspects of human in vivo tissues, the 3-D intestinal cell model generated in this study offers a novel approach for studying microbial infectivity from the perspective of the host-pathogen interaction.

  7. Variations in gene and protein expression in canine chondrodystrophic nucleus pulposus cells following long-term three-dimensional culture.

    Directory of Open Access Journals (Sweden)

    Munetaka Iwata

    Full Text Available Intervertebral disc (IVD degeneration greatly affects quality of life. The nucleus pulposus (NP of chondrodystrophic dog breeds (CDBs is similar to the human NP, because the cells disappear with age and are replaced by fibrochondrocyte-like cells. However, because IVD develops as early as within the first year of life, we used canines as a model to investigate in vitro the mechanisms underlying IVD degeneration. Specifically, we evaluated the potential of a three-dimensional (3D culture of healthy NP as an in vitro model system to investigate the mechanisms of IVD degeneration. Agarose hydrogels were populated with healthy NP cells from beagles after performing magnetic resonance imaging, and mRNA expression profiles and pericellular extracellular matrix (ECM protein distribution were determined. After 25 days of 3D culture, there was a tendency for redifferentiation into the native NP phenotype, and mRNA levels of Col2A1, COMP, and CK18 were not significantly different from those of freshly isolated cells. Our findings suggest that long-term 3D culture promoted chondrodystrophic NP redifferentiation through reconstruction of the pericellular microenvironment. Further, lipopolysaccharide (LPS induced expression of TNF-α, MMP3, MMP13, VEGF, and PGES mRNA in the 3D cultures, creating a molecular milieu that mimics that of degenerated NP. These results suggest that this in vitro model represents a reliable and cost-effective tool for evaluating new therapies for disc degeneration.

  8. Design and Validation of a Three-Dimensional Printed Flexible Canine Otoscopy Teaching Model

    OpenAIRE

    Nibblett, Belle Marie D.; Pereira, Mary Mauldin; Sithole, Fortune; Orchard, Paul A.D.; Bauman, Eric B.

    2017-01-01

    Introduction A teaching model was sought to improve canine otoscopy skill and reduce use of teaching dogs. Methods An otoscopy teaching model was printed in a flexible medium on a desktop three-dimensional printer from a magnetic resonance image of a canine external ear canal. The model was mounted in a polyvinyl dog mannequin. Validation of the teaching model was sought from student, faculty, and dog perspective. Student perception of prelaboratory training was assessed using a survey regard...

  9. Analytical model for three-dimensional Mercedes-Benz water molecules

    OpenAIRE

    Urbic, T.

    2012-01-01

    We developed a statistical model which describes the thermal and volumetric properties of water-like molecules. A molecule is presented as a three-dimensional sphere with four hydrogen-bonding arms. Each water molecule interacts with its neighboring waters through a van der Waals interaction and an orientation-dependent hydrogen-bonding interaction. This model, which is largely analytical, is a variant of a model developed before for a two-dimensional Mercedes-Benz model of water. We explored...

  10. THREE-DIMENSIONAL SIMULATION OF FLOW AT AN OPEN-CHANNEL CONFLUENCE WITH TURBULENCE MODELS

    Science.gov (United States)

    Dinh Thanh, Mung; Kimura, Ichiro; Shimizu, Yasuyuki

    Open-channel confluence flows are common in natural river systems as well as in environmental and hydraulic engineering, such as in river engineering. Often, these flows are three-dimensional and complex,while numerical studies fully describing confluence flow are still few. This paper presents the results of investigation of confluence flow using a three-dimensional numerical model with the linear and nonlinear k-ε models. To treat the dynamic boundary condition at the free surface, non-hydrostatic pressure is included in the present model. The model is validated using the experimental data available. Adequacy of the present model with two turbulence models above is indicated based on the result analysis. The nonlinear model is indicated as the more advantageous one than the linear one.

  11. Three-dimensional dose-response models of risk for radiation injury carcinogenesis

    International Nuclear Information System (INIS)

    Raabe, O.G.

    1988-01-01

    The use of computer graphics in conjunction with three-dimensional models of dose-response relationships for chronic exposure to ionizing radiation dramaticly clarifies the separate and interactive roles of competing risks. The three dimensions are average dose rate, exposure time, and risk. As an example, the functionally injurious and carcinogenic responses after systemic uptake of Ra-226 by beagles, mice and people with consequent alpha particle irradiation of the bone are represented by three-dimensional dose-rate/time/response surfaces that demonstrate the contributions with the passage of time of the competing deleterious responses. These relationships are further evaluated by mathematical stripping with three-dimensional illustrations that graphically show the resultant separate contribution of each effect. Radiation bone injury predominates at high dose rates and bone cancer at intermediate dose rates. Low dose rates result in spontaneous deaths from natural aging, yielding a type of practical threshold for bone cancer induction. Risk assessment is benefited by the insights that become apparent with these three-dimensional models. The improved conceptualization afforded by them contributes to planning and evaluating epidemiological analyses and experimental studies

  12. Biofabrication of a three-dimensional liver micro-organ as an in vitro drug metabolism model

    International Nuclear Information System (INIS)

    Chang, Robert; Sun Wei; Emami, Kamal; Wu Honglu

    2010-01-01

    In their normal in vivo matrix milieu, tissues assume complex well-organized three-dimensional architectures. Therefore, the primary aim in the tissue engineering design process is to fabricate an optimal analog of the in vivo scenario. This challenge can be addressed by applying emerging layered biofabrication approaches in which the precise configuration and composition of cells and bioactive matrix components can recapitulate the well-defined three-dimensional biomimetic microenvironments that promote cell-cell and cell-matrix interactions. Furthermore, the advent of and refinements in microfabricated systems can present physical and chemical cues to cells in a controllable and reproducible fashion unmatched with conventional cultures, resulting in the precise construction of engineered biomimetic microenvironments on the cellular length scale in geometries that are readily parallelized for high throughput in vitro models. As such, the convergence of layered solid freeform fabrication (SFF) technologies along with microfabrication techniques enables the creation of a three-dimensional micro-organ device to serve as an in vitro platform for cell culture, drug screening or to elicit further biological insights, particularly for NASA's interest in a flight-suitable high-fidelity microscale platform to study drug metabolism in space and planetary environments. The proposed model in this paper involves the combinatorial setup of an automated syringe-based, layered direct cell writing bioprinting process with micro-patterning techniques to fabricate a microscale in vitro device housing a chamber of bioprinted three-dimensional liver cell-encapsulated hydrogel-based tissue constructs in defined design patterns that biomimic the cell's natural microenvironment for enhanced biological functionality. In order to assess the structural formability and biological feasibility of such a micro-organ, reproducibly fabricated tissue constructs were biologically characterized for

  13. Development of a three dimensional circulation model based on fractional step method

    Directory of Open Access Journals (Sweden)

    Mazen Abualtayef

    2010-03-01

    Full Text Available A numerical model was developed for simulating a three-dimensional multilayer hydrodynamic and thermodynamic model in domains with irregular bottom topography. The model was designed for examining the interactions between flow and topography. The model was based on the three-dimensional Navier-Stokes equations and was solved using the fractional step method, which combines the finite difference method in the horizontal plane and the finite element method in the vertical plane. The numerical techniques were described and the model test and application were presented. For the model application to the northern part of Ariake Sea, the hydrodynamic and thermodynamic results were predicted. The numerically predicted amplitudes and phase angles were well consistent with the field observations.

  14. Upper ocean ecosystem dynamics and iron cycling in a global three-dimensional model

    OpenAIRE

    Moore, J. Keith; Doney, Scott C; Lindsay, Keith

    2004-01-01

    A global three-dimensional marine ecosystem model with several key phytoplankton functional groups, multiple limiting nutrients, explicit iron cycling, and a mineral ballast/organic matter parameterization is run within a global ocean circulation model. The coupled biogeochemistry/ecosystem/circulation (BEC) model reproduces known basin-scale patterns of primary and export production, biogenic silica production, calcification, chlorophyll, macronutrient and dissolved iron concentrations. The ...

  15. Three-dimensional analysis and computer modeling of the capillary endothelial vesicular system with electron tomography.

    Science.gov (United States)

    Wagner, Roger; Modla, Shannon; Hossler, Fred; Czymmek, Kirk

    2012-08-01

    We examined the three-dimensional organization of the endothelial vesicular system with TEM tomography of semi-thick sections. Mouse abdominal muscle capillaries were perfused with terbium to label vesicular compartments open to the luminal surface. The tissue was prepared for TEM and semi-thick (250 nm) sections were cut. Dual axis tilt series, collected from +60° to -60° at 1° increments, were acquired in regions of labeled abluminal caveolae. These tomograms were reconstructed and analyzed to reveal three-dimensional vesicular associations not evident in thin sections. Reconstructed tomograms revealed free vesicles, both labeled and unlabeled, in the endothelial cytoplasm as well as transendothelial channels that spanned the luminal and abluminal membranes. A large membranous compartment connecting the luminal and abluminal surfaces was also present. Computer modeling of tomographic data and video animations provided three-dimensional perspectives to these structures. Uncertainties associated with other three-dimensional methods to study the capillary wall are remedied by tomographic analysis of semi-thick sections. Transendothelial channels of fused vesicles and free cytoplasmic vesicles give credence to their role as large pores in the transport of solutes across the walls of continuous capillaries. © 2012 John Wiley & Sons Ltd.

  16. Chemometric analysis of MALDI mass spectrometric images of three-dimensional cell culture systems.

    Science.gov (United States)

    Weaver, Eric M; Hummon, Amanda B; Keithley, Richard B

    2015-09-07

    As imaging mass spectrometry (IMS) has grown in popularity in recent years, the applications of this technique have become increasingly diverse. Currently there is a need for sophisticated data processing strategies that maximize the information gained from large IMS data sets. Traditional two-dimensional heat maps of single ions generated in IMS experiments lack analytical detail, yet manual analysis of multiple peaks across hundreds of pixels within an entire image is time-consuming, tedious and subjective. Here, various chemometric methods were used to analyze data sets obtained by matrix-assisted laser desorption/ionization (MALDI) IMS of multicellular spheroids. HT-29 colon carcinoma multicellular spheroids are an excellent in vitro model system that mimic the three dimensional morphology of tumors in vivo . These data are especially challenging to process because, while different microenvironments exist, the cells are clonal which can result in strong similarities in the mass spectral profiles within the image. In this proof-of-concept study, a combination of principal component analysis (PCA), clustering methods, and linear discriminant analysis was used to identify unique spectral features present in spatially heterogeneous locations within the image. Overall, the application of these exploratory data analysis tools allowed for the isolation and detection of proteomic changes within IMS data sets in an easy, rapid, and unsupervised manner. Furthermore, a simplified, non-mathematical theoretical introduction to the techniques is provided in addition to full command routines within the MATLAB programming environment, allowing others to easily utilize and adapt this approach.

  17. Physically-induced cytoskeleton remodeling of cells in three-dimensional culture.

    Directory of Open Access Journals (Sweden)

    Sheng-Lin Lee

    Full Text Available Characterizing how cells in three-dimensional (3D environments or natural tissues respond to biophysical stimuli is a longstanding challenge in biology and tissue engineering. We demonstrate a strategy to monitor morphological and mechanical responses of contractile fibroblasts in a 3D environment. Cells responded to stretch through specific, cell-wide mechanisms involving staged retraction and reinforcement. Retraction responses occurred for all orientations of stress fibers and cellular protrusions relative to the stretch direction, while reinforcement responses, including extension of cellular processes and stress fiber formation, occurred predominantly in the stretch direction. A previously unreported role of F-actin clumps was observed, with clumps possibly acting as F-actin reservoirs for retraction and reinforcement responses during stretch. Responses were consistent with a model of cellular sensitivity to local physical cues. These findings suggest mechanisms for global actin cytoskeleton remodeling in non-muscle cells and provide insight into cellular responses important in pathologies such as fibrosis and hypertension.

  18. Comparison of one-, two-, and three-dimensional models for mass transport of radionuclides

    International Nuclear Information System (INIS)

    Prickett, T.A.; Voorhees, M.L.; Herzog, B.L.

    1980-02-01

    This technical memorandum compares one-, two-, and three-dimensional models for studying regional mass transport of radionuclides in groundwater associated with deep repository disposal of high-level radioactive wastes. In addition, this report outlines the general conditions for which a one- or two-dimensional model could be used as an alternate to a three-dimensional model analysis. The investigation includes a review of analytical and numerical models in addition to consideration of such conditions as rock and fluid heterogeneity, anisotropy, boundary and initial conditions, and various geometric shapes of repository sources and sinks. Based upon current hydrologic practice, each review is taken separately and discussed to the extent that the researcher can match his problem conditions with the minimum number of model dimensions necessary for an accurate solution

  19. A three-dimensional coupled thermo-hydro-mechanical model for deformable fractured geothermal systems

    DEFF Research Database (Denmark)

    Salimzadeh, Saeed; Paluszny, Adriana; Nick, Hamidreza M.

    2018-01-01

    A fully coupled thermal-hydraulic-mechanical (THM) finite element model is presented for fractured geothermal reservoirs. Fractures are modelled as surface discontinuities within a three-dimensional matrix. Non-isothermal flow through the rock matrix and fractures are defined and coupled to a mec......A fully coupled thermal-hydraulic-mechanical (THM) finite element model is presented for fractured geothermal reservoirs. Fractures are modelled as surface discontinuities within a three-dimensional matrix. Non-isothermal flow through the rock matrix and fractures are defined and coupled....... The model has been validated against several analytical solutions, and applied to study the effects of the deformable fractures on the injection of cold water in fractured geothermal systems. Results show that the creation of flow channelling due to the thermal volumetric contraction of the rock matrix...

  20. Three-dimensional culture of rat calvarial osteoblasts in porous biodegradable polymers

    Science.gov (United States)

    Ishaug-Riley, S. L.; Crane-Kruger, G. M.; Yaszemski, M. J.; Mikos, A. G.

    1998-01-01

    Neonatal rat calvarial osteoblasts were cultured in 90% porous, 75:25 poly(DL-lactic-co-glycolic acid) (PLGA) foam scaffolds for up to 56 days to examine the effects of the cell seeding density, scaffold pore size, and foam thickness on the proliferation and function of the cells in this three-dimensional environment. Osteoblasts were seeded at either 11.1 x 10(5) or 22.1 x 10(5) cells per cm2 onto PLGA scaffolds having pore sizes in the range of 150-300 or 500-710 microm with a thickness of either 1.9 or 3.2 mm. After 1 day in culture, 75.6 and 68.6% of the seeded cells attached and proliferated on the 1.9 mm thick scaffolds of 150-300 microm pore size for the low and high seeding densities, respectively. The number of osteoblasts continued to increase throughout the study and eventually leveled off near 56 days, as indicated by a quantitative DNA assay. Osteoblast/foam constructs with a low cell seeding density achieved comparable DNA content and alkaline phosphatase (ALPase) activity after 14 days, and mineralization results after 56 days to those with a high cell seeding density. A maximum penetration depth of osseous tissue of 220+/-40 microm was reached after 56 days in the osteoblast/foam constructs of 150-300 microm pore size initially seeded with a high cell density. For constructs of 500-710 microm pore size, the penetration depth was 190+/-40 microm under the same conditions. Scaffold pore size and thickness did not significantly affect the proliferation or function of osteoblasts as demonstrated by DNA content, ALPase activity, and mineralized tissue formation. These data show that comparable bone-like tissues can be engineered in vitro over a 56 day period using different rat calvarial osteoblast seeding densities onto biodegradable polymer scaffolds with pore sizes in the range of 150-710 microm. When compared with the results of a previous study where similar polymer scaffolds were seeded and cultured with marrow stromal cells, this study

  1. [Three dimensional finite element model of a modified posterior cervical single open-door laminoplasty].

    Science.gov (United States)

    Wang, Q; Yang, Y; Fei, Q; Li, D; Li, J J; Meng, H; Su, N; Fan, Z H; Wang, B Q

    2017-06-06

    Objective: To build a three-dimensional finite element models of a modified posterior cervical single open-door laminoplasty with short-segmental lateral mass screws fusion. Methods: The C(2)-C(7) segmental data were obtained from computed tomography (CT) scans of a male patient with cervical spondylotic myelopathy and spinal stenosis.Three-dimensional finite element models of a modified cervical single open-door laminoplasty (before and after surgery) were constructed by the combination of software package MIMICS, Geomagic and ABAQUS.The models were composed of bony vertebrae, articulating facets, intervertebral disc and associated ligaments.The loads of moments 1.5Nm at different directions (flexion, extension, lateral bending and axial rotation)were applied at preoperative model to calculate intersegmental ranges of motion.The results were compared with the previous studies to verify the validation of the models. Results: Three-dimensional finite element models of the modified cervical single open- door laminoplasty had 102258 elements (preoperative model) and 161 892 elements (postoperative model) respectively, including C(2-7) six bony vertebraes, C(2-3)-C(6-7) five intervertebral disc, main ligaments and lateral mass screws.The intersegmental responses at the preoperative model under the loads of moments 1.5 Nm at different directions were similar to the previous published data. Conclusion: Three-dimensional finite element models of the modified cervical single open- door laminoplasty were successfully established and had a good biological fidelity, which can be used for further study.

  2. A comparison of two- and three-dimensional stochastic models of regional solute movement

    Science.gov (United States)

    Shapiro, A.M.; Cvetkovic, V.D.

    1990-01-01

    Recent models of solute movement in porous media that are based on a stochastic description of the porous medium properties have been dedicated primarily to a three-dimensional interpretation of solute movement. In many practical problems, however, it is more convenient and consistent with measuring techniques to consider flow and solute transport as an areal, two-dimensional phenomenon. The physics of solute movement, however, is dependent on the three-dimensional heterogeneity in the formation. A comparison of two- and three-dimensional stochastic interpretations of solute movement in a porous medium having a statistically isotropic hydraulic conductivity field is investigated. To provide an equitable comparison between the two- and three-dimensional analyses, the stochastic properties of the transmissivity are defined in terms of the stochastic properties of the hydraulic conductivity. The variance of the transmissivity is shown to be significantly reduced in comparison to that of the hydraulic conductivity, and the transmissivity is spatially correlated over larger distances. These factors influence the two-dimensional interpretations of solute movement by underestimating the longitudinal and transverse growth of the solute plume in comparison to its description as a three-dimensional phenomenon. Although this analysis is based on small perturbation approximations and the special case of a statistically isotropic hydraulic conductivity field, it casts doubt on the use of a stochastic interpretation of the transmissivity in describing regional scale movement. However, by assuming the transmissivity to be the vertical integration of the hydraulic conductivity field at a given position, the stochastic properties of the hydraulic conductivity can be estimated from the stochastic properties of the transmissivity and applied to obtain a more accurate interpretation of solute movement. ?? 1990 Kluwer Academic Publishers.

  3. Multi-GPU hybrid programming accelerated three-dimensional phase-field model in binary alloy

    Directory of Open Access Journals (Sweden)

    Changsheng Zhu

    2018-03-01

    Full Text Available In the process of dendritic growth simulation, the computational efficiency and the problem scales have extremely important influence on simulation efficiency of three-dimensional phase-field model. Thus, seeking for high performance calculation method to improve the computational efficiency and to expand the problem scales has a great significance to the research of microstructure of the material. A high performance calculation method based on MPI+CUDA hybrid programming model is introduced. Multi-GPU is used to implement quantitative numerical simulations of three-dimensional phase-field model in binary alloy under the condition of multi-physical processes coupling. The acceleration effect of different GPU nodes on different calculation scales is explored. On the foundation of multi-GPU calculation model that has been introduced, two optimization schemes, Non-blocking communication optimization and overlap of MPI and GPU computing optimization, are proposed. The results of two optimization schemes and basic multi-GPU model are compared. The calculation results show that the use of multi-GPU calculation model can improve the computational efficiency of three-dimensional phase-field obviously, which is 13 times to single GPU, and the problem scales have been expanded to 8193. The feasibility of two optimization schemes is shown, and the overlap of MPI and GPU computing optimization has better performance, which is 1.7 times to basic multi-GPU model, when 21 GPUs are used.

  4. Multi-GPU hybrid programming accelerated three-dimensional phase-field model in binary alloy

    Science.gov (United States)

    Zhu, Changsheng; Liu, Jieqiong; Zhu, Mingfang; Feng, Li

    2018-03-01

    In the process of dendritic growth simulation, the computational efficiency and the problem scales have extremely important influence on simulation efficiency of three-dimensional phase-field model. Thus, seeking for high performance calculation method to improve the computational efficiency and to expand the problem scales has a great significance to the research of microstructure of the material. A high performance calculation method based on MPI+CUDA hybrid programming model is introduced. Multi-GPU is used to implement quantitative numerical simulations of three-dimensional phase-field model in binary alloy under the condition of multi-physical processes coupling. The acceleration effect of different GPU nodes on different calculation scales is explored. On the foundation of multi-GPU calculation model that has been introduced, two optimization schemes, Non-blocking communication optimization and overlap of MPI and GPU computing optimization, are proposed. The results of two optimization schemes and basic multi-GPU model are compared. The calculation results show that the use of multi-GPU calculation model can improve the computational efficiency of three-dimensional phase-field obviously, which is 13 times to single GPU, and the problem scales have been expanded to 8193. The feasibility of two optimization schemes is shown, and the overlap of MPI and GPU computing optimization has better performance, which is 1.7 times to basic multi-GPU model, when 21 GPUs are used.

  5. Inverse modeling of pumping tests to parameterize three-dimensional hydrofacies models

    Science.gov (United States)

    Medina-Ortega, P.; Morales-Casique, E.; Escolero-Fuentes, O.; Hernandez Espriu, A.

    2013-05-01

    We model the spatial distribution of hydrofacies in the aquifer of Mexico City and present a procedure for parameterizing those hydrofacies by inverse modeling of pumping tests . The aquifer is composed of a highly heterogeneous mixture of alluvial deposits and volcanic rocks. Lithological records from 111 production water wells are analyzed using indicator geostatistics. The different lithological categories are grouped into four hydrofacies, where a hydrofacies is a set of lithological categories which have similar hydraulic properties. An exponential variogram model was fitted to each hydrofacies by minimizing cross validation errors. The data set is then kriged to obtain the three-dimensional distribution of each hydrofacies within the alluvial aquifer of Mexico City. We present a procedure to parameterize the four hydrofacies by inverse modeling of two pumping tests and test the predictive capabilities of the inversion results by forward modeling of two more pumping tests.

  6. Patient-specific three-dimensional composite bone models for teaching and operation planning.

    Science.gov (United States)

    Matthews, Felix; Messmer, Peter; Raikov, Vladislav; Wanner, Guido A; Jacob, Augustinus L; Regazzoni, Pietro; Egli, Adrian

    2009-10-01

    Orthopedic trauma care relies on two-dimensional radiograms both before and during the operation. Understanding the three-dimensional nature of complex fractures on plain radiograms is challenging. Modern fluoroscopes can acquire three-dimensional volume datasets even during an operation, but the device limitations constrain the acquired volume to a cube of only 12-cm edge. However, viewing the surrounding intact structures is important to comprehend the fracture in its context. We suggest merging a fluoroscope's volume scan into a generic bone model to form a composite full-length 3D bone model. Materials consisted of one cadaver bone and 20 three-dimensional surface models of human femora. Radiograms and computed tomography scans were taken before and after applying a controlled fracture to the bone. A 3D scan of the fracture was acquired using a mobile fluoroscope (Siemens Siremobil). The fracture was fitted into the generic bone models by rigid registration using a modified least-squares algorithm. Registration precision was determined and a clinical appraisal of the composite models obtained. Twenty composite bone models were generated. Average registration precision was 2.0 mm (range 1.6 to 2.6). Average processing time on a laptop computer was 35 s (range 20 to 55). Comparing synthesized radiograms with the actual radiograms of the fractured bone yielded clinically satisfactory results. A three-dimensional full-length representation of a fractured bone can reliably be synthesized from a short scan of the patient's fracture and a generic bone model. This patient-specific model can subsequently be used for teaching, surgical operation planning, and intraoperative visualization purposes.

  7. A Three-Dimensional Model of the Gas-Cell Atomic Frequency Standard.

    Science.gov (United States)

    1988-02-25

    Clock Model Calculations ......................................................... 8 11. Exponents for Power-Law Formulas: oy -P a, S -P B, and PY...iz not substantiated oy the three-dimensional model. Considering Fig. 4 and Table IIi, it is more accurate tu state that the clock’s frequency offset...1985). [71 H. E. Williams, T. M. Kwon and T. McClelland, "Compact rectangular cavity for rubidium vapor cell frequency standards," Proceeding of the

  8. Development of a Three-Dimensional Bioengineering Technology to Generate Lung Tissue for Personalized Disease Modeling.

    Science.gov (United States)

    Wilkinson, Dan C; Alva-Ornelas, Jackelyn A; Sucre, Jennifer M S; Vijayaraj, Preethi; Durra, Abdo; Richardson, Wade; Jonas, Steven J; Paul, Manash K; Karumbayaram, Saravanan; Dunn, Bruce; Gomperts, Brigitte N

    2017-02-01

    Stem cell technologies, especially patient-specific, induced stem cell pluripotency and directed differentiation, hold great promise for changing the landscape of medical therapies. Proper exploitation of these methods may lead to personalized organ transplants, but to regenerate organs, it is necessary to develop methods for assembling differentiated cells into functional, organ-level tissues. The generation of three-dimensional human tissue models also holds potential for medical advances in disease modeling, as full organ functionality may not be necessary to recapitulate disease pathophysiology. This is specifically true of lung diseases where animal models often do not recapitulate human disease. Here, we present a method for the generation of self-assembled human lung tissue and its potential for disease modeling and drug discovery for lung diseases characterized by progressive and irreversible scarring such as idiopathic pulmonary fibrosis (IPF). Tissue formation occurs because of the overlapping processes of cellular adhesion to multiple alveolar sac templates, bioreactor rotation, and cellular contraction. Addition of transforming growth factor-β1 to single cell-type mesenchymal organoids resulted in morphologic scarring typical of that seen in IPF but not in two-dimensional IPF fibroblast cultures. Furthermore, this lung organoid may be modified to contain multiple lung cell types assembled into the correct anatomical location, thereby allowing cell-cell contact and recapitulating the lung microenvironment. Our bottom-up approach for synthesizing patient-specific lung tissue in a scalable system allows for the development of relevant human lung disease models with the potential for high throughput drug screening to identify targeted therapies. Stem Cells Translational Medicine 2017;6:622-633. © 2016 The Authors Stem Cells Translational Medicine published by Wiley Periodicals, Inc. on behalf of AlphaMed Press.

  9. Application of Steenbeck's minimum principle for three-dimensional modelling of DC arc plasma torches

    CERN Document Server

    Li He Ping; Chen, X

    2003-01-01

    In this paper, physical/mathematical models for the three-dimensional, quasi-steady modelling of the plasma flow and heat transfer inside a non-transferred DC arc plasma torch are described in detail. The Steenbeck's minimum principle (Finkelnburg W and Maecker H 1956 Electric arcs and thermal plasmas Encyclopedia of Physics vol XXII (Berlin: Springer)) is employed to determine the axial position of the anode arc-root at the anode surface. This principle postulates a minimum arc voltage for a given arc current, working gas flow rate, and torch configuration. The modelling results show that the temperature and flow fields inside the DC non-transferred arc plasma torch show significant three-dimensional features. The predicted anode arc-root attachment position and the arc shape by employing Steenbeck's minimum principle are reasonably consistent with experimental observations. The thermal efficiency and the torch power distribution are also calculated in this paper. The results show that the thermal efficiency...

  10. Three-dimensional model of stellacyanin and its implications for electron transfer reactivity

    DEFF Research Database (Denmark)

    Wherland, S; Farver, O; Pecht, I

    1988-01-01

    Experimental data were combined with computational methods in constructing a hypothetical three-dimensional model for the blue single copper protein Rhus stellacyanin (St). The known sequence of stellacyanin and its homology with plastocyanin (Pc) were used together with the results of spectrosco......Experimental data were combined with computational methods in constructing a hypothetical three-dimensional model for the blue single copper protein Rhus stellacyanin (St). The known sequence of stellacyanin and its homology with plastocyanin (Pc) were used together with the results....... The structure also indicates that a carbonyl oxygen atom is near the copper, thus the site may have analogy to the Alcaligenes denitrificans azurin (Az) site, although the amino acid sequence is more homologous to that of Pc. The model indicates that aspartate 49, reductively labeled by Cr(III), is near...

  11. Three-dimensional organoid culture reveals involvement of Wnt/β-catenin pathway in proliferation of bladder cancer cells.

    Science.gov (United States)

    Yoshida, Takahiro; Sopko, Nikolai A; Kates, Max; Liu, Xiaopu; Joice, Gregory; McConkey, David J; Bivalacqua, Trinity J

    2018-02-16

    There has been increasing awareness of the importance of three-dimensional culture of cancer cells. Tumor cells growing as multicellular spheroids in three-dimensional culture, alternatively called organoids, are widely believed to more closely mimic solid tumors in situ . Previous studies concluded that the Wnt/β-catenin pathway is required for regeneration of the normal urothelium after injury and that β-catenin is upregulated in human bladder cancers, but no clear evidence has been advanced to support the idea that the Wnt/β-catenin pathway is directly involved in deregulated proliferation and the other malignant characteristics of bladder cancer cells. Here we report that the Wnt/β-catenin pathway activator, CHIR99021, promoted proliferation of established human bladder cancer cell lines when they were grown in organoid culture but not when they were grown in conventional adherent cultures. CHIR99021 activated Wnt/β-catenin pathway in bladder cancer cell lines in organoid culture. CHIR99021 also stimulated proliferation and the Wnt/b-catenin pathway in primary human bladder cancer organoids. RNAi-mediated knockdown of β-catenin blocked growth of organoids. The effects of CHIR99021 were associated with decreased expression of the urothelial terminal differentiation marker, cytokeratin 20. Our data suggest that the Wnt/β-catenin pathway is required for the proliferation of bladder cancer cells in three-dimensional organoid culture and provide a concrete example of why organoid culture is important for cancer research.

  12. Application of data mining in three-dimensional space time reactor model

    International Nuclear Information System (INIS)

    Jiang Botao; Zhao Fuyu

    2011-01-01

    A high-fidelity three-dimensional space time nodal method has been developed to simulate the dynamics of the reactor core for real time simulation. This three-dimensional reactor core mathematical model can be composed of six sub-models, neutron kinetics model, cay heat model, fuel conduction model, thermal hydraulics model, lower plenum model, and core flow distribution model. During simulation of each sub-model some operation data will be produced and lots of valuable, important information reflecting the reactor core operation status could be hidden in, so how to discovery these information becomes the primary mission people concern. Under this background, data mining (DM) is just created and developed to solve this problem, no matter what engineering aspects or business fields. Generally speaking, data mining is a process of finding some useful and interested information from huge data pool. Support Vector Machine (SVM) is a new technique of data mining appeared in recent years, and SVR is a transformed method of SVM which is applied in regression cases. This paper presents only two significant sub-models of three-dimensional reactor core mathematical model, the nodal space time neutron kinetics model and the thermal hydraulics model, based on which the neutron flux and enthalpy distributions of the core are obtained by solving the three-dimensional nodal space time kinetics equations and energy equations for both single and two-phase flows respectively. Moreover, it describes that the three-dimensional reactor core model can also be used to calculate and determine the reactivity effects of the moderator temperature, boron concentration, fuel temperature, coolant void, xenon worth, samarium worth, control element positions (CEAs) and core burnup status. Besides these, the main mathematic theory of SVR is introduced briefly next, on the basis of which SVR is applied to dealing with the data generated by two sample calculation, rod ejection transient and axial

  13. [Three-dimensional finite element model of thoracolumbar spine with osteoporotic vertebral compression fracture].

    Science.gov (United States)

    Fei, Qi; Li, Qiu-jun; Yang, Yong; Li, Dong; Tang, Hai; Li, Jin-jun; Wang, Bing-qiang; Wang, Yi-peng

    2010-11-09

    To build a three-dimensional finite element model of thoracolumbar spine with osteoporotic vertebral compression fracture (OVCF) and analyze its biomechanical change. The T10-L2 segment data were obtained from computed tomography (CT) scans of an elderly female with a single T12 OVCF. A three-dimensional finite element model of thoracolumbar spine was constructed with the MIMICS and ABAQUS software. The model was composed of bony vertebrae, articulating facets, intervertebral disc and associated ligaments. The basic stress analysis of T10-L2 motion segment was made for different material properties of bone, ligaments and facet joints contacting frictional property. The stress on the annulus fiber, nucleus pulposus, endplate and facet joints under axial pressure (0.3 MPa, 1.0 MPa, 4.0 MPa) were analyzed. A three-dimensional finite element model of human T12-L2 motion segment had 617468 elements. And the stress was higher in vertebral body than posterior structure. The distribution of pressure stresses in intervertebral disc was asymmetrical. The stress increased with a rising axial pressure. 3D finite element model of thoracolumbar OVCF and adjacent segments are successfully established. The results of stress analysis are both feasible and reliable.

  14. Increasingly transformed MCF-10A cells have a progressively tumor-like phenotype in three-dimensional basement membrane culture.

    Science.gov (United States)

    Imbalzano, Karen M; Tatarkova, Iva; Imbalzano, Anthony N; Nickerson, Jeffrey A

    2009-03-16

    MCF-10A cells are near diploid and normal human mammary epithelial cells. In three-dimensional reconstituted basement membrane culture, they undergo a well-defined program of proliferation, differentiation, and growth arrest, forming acinar structures that recapitulate many aspects of mammary architecture in vivo. The pre-malignant MCF-10AT cells and malignant MCF-10CA1a lines were sequentially derived from the MCF-10A parental cell line first by expression of a constitutively active T24 H-Ras generating the MCF-10AT cell line. This was followed by repeated selection for increasingly aggressive tumor formation from cells recovered from xenograft tumors in immuno-compromised mice, generating the MCF-10CA1a cell line. When inoculated subcutaneously into the flanks of immuno-compromised mice, MCF-10AT cells occasionally form tumors, whereas MCF-10CA1a cells invariably form tumors with a shorter latency than MCF-10AT derived tumors. MCF-10AT cells grown in three-dimensional basement membrane culture form complex multi-acinar structures that produce a basement membrane but undergo delayed cell cycle arrest and have incomplete luminal development. MCF-10CA1a cells grown in three-dimensional basement membrane culture form large, hyper-proliferative masses, that retain few characteristics of MCF10A acini and more closely resemble tumors. Here we report on the growth and differentiation properties of these three matched cell lines in three-dimensional basement membrane culture. Features of tissue morphogenesis were assessed, including proliferation, basement membrane formation, polarization of alpha-6 beta-4 integrin to the basement membrane, formation of cell:cell junctions, and apoptosis for luminal clearance. The matched series of normal MCF-10A, pre-malignant MCF-10AT, and malignant MCF-10CA1a cells offers a unique opportunity to study the mechanisms of malignant progression both in a three-dimensional microenvironment and in the same cell background.

  15. Construction and validation of a three-dimensional finite element model of degenerative scoliosis.

    Science.gov (United States)

    Zheng, Jie; Yang, Yonghong; Lou, Shuliang; Zhang, Dongsheng; Liao, Shenghui

    2015-12-24

    With the aging of the population, degenerative scoliosis (DS) incidence rate is increasing. In recent years, increasing research on this topic has been carried out, yet biomechanical research on the subject is seldom seen and in vitro biomechanical model of DS nearly cannot be available. The objective of this study was to develop and validate a complete three-dimensional finite element model of DS in order to build the digital platform for further biomechanical study. A 55-year-old female DS patient (Suer Pan, ID number was P141986) was selected for this study. This study was performed in accordance with the ethical standards of Declaration of Helsinki and its amendments and was approved by the local ethics committee (117 hospital of PLA ethics committee). Spiral computed tomography (CT) scanning was conducted on the patient's lumbar spine from the T12 to S1. CT images were then imported into a finite element modeling system. A three-dimensional solid model was then formed from segmentation of the CT scan. The three-dimensional model of each vertebra was then meshed, and material properties were assigned to each element according to the pathological characteristics of DS. Loads and boundary conditions were then applied in such a manner as to simulate in vitro biomechanical experiments conducted on lumbar segments. The results of the model were then compared with experimental results in order to validate the model. An integral three-dimensional finite element model of DS was built successfully, consisting of 113,682 solid elements, 686 cable elements, 33,329 shell elements, 4968 target elements, 4968 contact elements, totaling 157,635 elements, and 197,374 nodes. The model accurately described the physical features of DS and was geometrically similar to the object of study. The results of analysis with the finite element model agreed closely with in vitro experiments, validating the accuracy of the model. The three-dimensional finite element model of DS built in

  16. Development of three dimensional hydrogeological model and estimation of groundwater storage in Japanese islands.

    Science.gov (United States)

    Koshigai, Masaru; Marui, Atsunao; Ito, Narimitsu; Yoshizawa, Takuya

    An optimum groundwater management which achieved a good balance between conservation and utilization is required to use the groundwater as sustainable water resources. On the recent groundwater management which uses a numerical simulation, it is important to understand the full breadth of groundwater basin and groundwater storage for evaluation the extent of human impact. However, previous study has not been clarified the full breadth of them throughout Japan, because basic information on the groundwater has not maintained still enough. The present work developed the three dimensional hydrogeological model in Japanese islands using the related database. And the groundwater storage was estimated based on the three dimensional hydrogeological model. As a result, to evaluate the full breadth of groundwater basin became possible from the sharply wide-range distribution of stratum. Moreover, we succeeded in providing the useful information such as development potential of unused groundwater resources for groundwater conservation and development.

  17. Three-dimensional dynamic response modeling of floating nuclear plants using finite element methods

    International Nuclear Information System (INIS)

    Johnson, H.W.; Vaish, A.K.; Porter, F.L.; McGeorge, R.

    1976-01-01

    A modelling technique which can be used to obtain the dynamic response of a floating nuclear plant (FNP) moored in an artificial basin is presented. Hydrodynamic effects of the seawater in the basin have a significant impact on the response of the FNP and must be included. A three-dimensional model of the platform and mooring system (using beam elements) is used, with the hydrodynamic effects represented by added mass and damping. For an essentially square plant in close proximity to the site structures, the three-dimensional nature of the basin must be considered in evaluating the added mass and damping. However, direct solutions for hydrodynamic effects with complex basin geometry are not, as yet, available. A method for estimating these effects from planar finite element analysis is developed. (Auth.)

  18. Fast three-dimensional core optimization based on modified one-group model

    International Nuclear Information System (INIS)

    Freire, Fernando S.; Martinez, Aquilino S.; Silva, Fernando C. da

    2009-01-01

    The optimization of any nuclear reactor core is an extremely complex process that consumes a large amount of computer time. Fortunately, the nuclear designer can rely on a variety of methodologies able to approximate the analysis of each available core loading pattern. Two-dimensional codes are usually used to analyze the loading scheme. However, when particular axial effects are present in the core, two-dimensional analysis cannot produce good results and three-dimensional analysis can be required at all time. Basically, in this paper are presented the major advantages that can be found when one use the modified one-group diffusion theory coupled with a buckling correction model in optimization process. The results of the proposed model are very accurate when compared to benchmark results obtained from detailed calculations using three-dimensional nodal codes (author)

  19. Fast three-dimensional core optimization based on modified one-group model

    Energy Technology Data Exchange (ETDEWEB)

    Freire, Fernando S. [ELETROBRAS Termonuclear S.A. - ELETRONUCLEAR, Rio de Janeiro, RJ (Brazil). Dept. GCN-T], e-mail: freire@eletronuclear.gov.br; Martinez, Aquilino S.; Silva, Fernando C. da [Coordenacao dos Programas de Pos-graduacao de Engenharia (COPPE/UFRJ), Rio de Janeiro, RJ (Brazil). Programa de Engenharia Nuclear], e-mail: aquilino@con.ufrj.br, e-mail: fernando@con.ufrj.br

    2009-07-01

    The optimization of any nuclear reactor core is an extremely complex process that consumes a large amount of computer time. Fortunately, the nuclear designer can rely on a variety of methodologies able to approximate the analysis of each available core loading pattern. Two-dimensional codes are usually used to analyze the loading scheme. However, when particular axial effects are present in the core, two-dimensional analysis cannot produce good results and three-dimensional analysis can be required at all time. Basically, in this paper are presented the major advantages that can be found when one use the modified one-group diffusion theory coupled with a buckling correction model in optimization process. The results of the proposed model are very accurate when compared to benchmark results obtained from detailed calculations using three-dimensional nodal codes (author)

  20. Experimental and theoretical study of Pseudomonas putida transport in a three-dimensional model aquifer

    Science.gov (United States)

    Vasiliadou, I. A.; Katzourakis, V. E.; Syngouna, V. I.; Chrysikopoulos, C. V.

    2012-04-01

    This study is focused on the transport of Pseudomonas (P.) putida bacterial cells in a three-dimensional model aquifer. The pilot-scale aquifer consisted of a rectangular glass tank with internal dimensions: 120 cm length, 48 cm width, and 50 cm height, carefully packed with well-characterized quartz sand. The P. putida attachment onto the aquifer sand was determined with batch experiments, and was adequately described by a linear isotherm. Transport experiments with a conservative tracer and P. putida were conducted to characterize the aquifer and to investigate the bacterial behavior during transport in water saturated porous media. A three-dimensional, finite-difference numerical model for bacterial transport in saturated, homogeneous porous media was developed and was used to successfully fit the experimental data. Furthermore, theoretical interaction energy calculations suggested that the extended DLVO theory seems to predict bacteria attachment onto the aquifer sand better than the classical DLVO theory.

  1. Verifying Three-Dimensional Skull Model Reconstruction Using Cranial Index of Symmetry

    OpenAIRE

    Kung, Woon-Man; Chen, Shuo-Tsung; Lin, Chung-Hsiang; Lu, Yu-Mei; Chen, Tzu-Hsuan; Lin, Muh-Shi

    2013-01-01

    BACKGROUND: Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM) implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D) CAD modeling. Thus, it is quite important ...

  2. Three-dimensional modelling of a dc non-transferred arc plasma torch

    International Nuclear Information System (INIS)

    Li Heping; Chen Xi

    2001-01-01

    Three-dimensional (3D) modelling results are presented concerning a direct current (dc) non-transferred arc plasma torch with axisymmetrical geometrical configuration and axisymmetrical boundary conditions. It is shown that the arc is locally attached at the anode surface of the plasma torch, and the heat transfer and plasma flow within the torch are of 3D features. The predicted arc root location at the anode surface and arc voltage of the torch are very consistent with corresponding experimental results. (author)

  3. Three-dimensional culture for monoclonal antibody production by hybridoma cells immobilized in macroporous gel particles.

    Science.gov (United States)

    Nilsang, Suthasinee; Nehru, Vishal; Plieva, Fatima M; Nandakumar, Kutty Selva; Rakshit, Sudip Kumar; Holmdahl, Rikard; Mattiasson, Bo; Kumar, Ashok

    2008-01-01

    Cell proliferation and long-term production of monoclonal antibody IgG(2b) by M2139 hybridoma cells immobilized in macroporous gel particles (MGPs) in packed-bed reactor were studied for a period of 60 days. The MGPs were made of supermacroporous gels produced in frozen conditions from crosslinked polyacrylamide and modified with gelatin which were housed in special plastic carriers (7 x 9 mm(2)). Cells were trapped in the interior part of MGPs by attaching to the void space of the gel matrix as three-dimensional (3D) cultivation using gelatin as a substrate layer. Optimizing productivity by hybridoma cell relies on understanding regulation of antibody production. In this study, the behavior of M2139 cells in two-dimensional cultures on multiwell plate surfaces was also investigated. The effect of three different medium such as basal medium Dulbecco's modified Eagle's medium (D-MEM) containing L-glutamine or L-glutamine + 2 mM alpha-ketoglutarate or L-alanyl-glutamine (GlutaMAXtrade mark) was studied prior to its use in 3D cultivation. The kinetics of cell growth in basal medium containing L-glutamine + alpha-ketoglutarate was similar to cells grown on GlutaMAX containing medium, whereas D-MEM containing L-glutamine showed lower productivity. With the maximal viable cell density (6.85 x 10(6) cells mL(-1)) and highest specific mAb production rate (3.9 mug mL(-1) 10(-4) viable cell day(-1)), D-MEM-GlutaMAX was further selected for 3D cultivation. Cells in MGPs were able to grow and secrete antibody for 30 days in packed-bed batch reactor, before a fresh medium reservoir was replaced. After being supplied with fresh medium, cells again showed continuous growth for another 30 days with mAb production efficiency of 50%. These results demonstrate that MGPs can be used efficiently as supporting carrier for long-term monoclonal antibody production.

  4. Virtual reality publication of spiral ct-derived three-dimensional models: or, creation of spiral, CT-derived, three-dimensional VRML objects.

    Science.gov (United States)

    Tyszka, J M

    1997-01-01

    Three-dimensional models can be generated from slice images, such as those obtained from computed tomography (CT) and magnetic resonance imaging (MRI) using a variety of techniques. A popular method for rendering 3D anatomical models is the creation of polygonal mesh surfaces representing the boundary between tissues. Mesh surfaces can be rendered extremely quickly using conventional personal computers, without recourse to more expensive graphic workstations. The dissemination of three-dimensional (3D) models across the Internet has been made significantly easier by the definition of the Virtual Reality Markup Language (VRML) format. The VRML definition allows the parameters and relationships of 3D objects to be described in a text format. The text file can be transfered from a host computer to a remote client computer through the World Wide Web and viewed using readily available software (See Appendix). VRML is based on the definition of primitive 3D objects such as polygons and spheres. Consequently, the transition from a mesh surface derived from a clinical image data set to a VRML object is relatively simple, allowing for convenient and cost-effective dissemination of 3D clinical models across the internet.

  5. Three-dimensional dynamic response modelling for floating nuclear power plants using finite element methods

    International Nuclear Information System (INIS)

    Johnson, H.W.; Vaish, A.K.; Porter, F.L.; McGeorge, R.

    1975-01-01

    A modelling technique which can be used to obtain the dynamic response of a floating nuclear plant (FNP) moored in an artificial basin is presented. Hydrodynamic effects of the seawater in the basin have a significant impact on the response of the FNP and must be included. A three dimensional model of the platform and mooring system (using beam elements) is used, with the hydrodynamic effects represented by added mass and damping. For an essentially square plant in close proximity to the site structures, the three dimensional nature of the basin must be considered in evaluating the added mass and damping. A method for estimating these effects from planer finite element analyses is developed. The accuracy of the planar finite element model in obtaining two-dimensional added mass and damping is shown through comparison with existing the documented results. In addition, a comparison is shown for open ocean added mass and damping with a three-dimensional solution using velocity potential functions. It is concluded that the overall technique results in a reasonable and conservative calculation of the dynamic response of the floating nuclear plant. (orig./HP) [de

  6. Three Dimensional Explicit Model for Cometary Tail Ions Interactions with Solar Wind

    Science.gov (United States)

    Al Bermani, M. J. F.; Alhamed, S. A.; Khalaf, S. Z.; Ali, H. Sh.; Selman, A. A.

    2009-06-01

    The different interactions between cometary tail and solar wind ions are studied in the present paper based on three-dimensional Lax explicit method. The model used in this research is based on the continuity equations describing the cometary tail-solar wind interactions. Three dimensional system was considered in this paper. Simulation of the physical system was achieved using computer code written using Matlab 7.0. The parameters studied here assumed Halley comet type and include the particle density rho, the particles velocity v, the magnetic field strength B, dynamic pressure p and internal energy E. The results of the present research showed that the interaction near the cometary nucleus is mainly affected by the new ions added to the plasma of the solar wind, which increases the average molecular weight and result in many unique characteristics of the cometary tail. These characteristics were explained in the presence of the IMF.

  7. Three-dimensional modelling of horizontal chemical vapor deposition. I - MOCVD at atmospheric pressure

    Science.gov (United States)

    Ouazzani, Jalil; Rosenberger, Franz

    1990-01-01

    A systematic numerical study of the MOCVD of GaAs from trimethylgallium and arsine in hydrogen or nitrogen carrier gas at atmospheric pressure is reported. Three-dimensional effects are explored for CVD reactors with large and small cross-sectional aspect ratios, and the effects on growth rate uniformity of tilting the susceptor are investigated for various input flow rates. It is found that, for light carrier gases, thermal diffusion must be included in the model. Buoyancy-driven three-dimensional flow effects can greatly influence the growth rate distribution through the reactor. The importance of the proper design of the lateral thermal boundary conditions for obtaining layers of uniform thickness is emphasized.

  8. Three-dimensional sound localisation with a lizard peripheral auditory model

    DEFF Research Database (Denmark)

    Kjær Schmidt, Michael; Shaikh, Danish

    -related transfer functions [Cheng and Wakefield 2001]. Here we present a preliminary sensorimotor approach [Aytekin et al. 2007; Shaikh 2012] in simulation to three-dimensional sound source localisation employing two simulated microphones. We use directed spatial movements of the microphones to resolve the unknown......Conventional approaches for three-dimensional sound source localisation utilise either interaural time difference information extracted via static two-dimensional multi-microphone grids [Imran et al. 2016] with at least four microphones, or spectral cues [Keyrouz 2014; Reddy et al. 2016] via head...... information in a single plane which by itself is insufficient to localise the acoustic target in three dimensions. A multi-layer perceptron neural network is used to combine two independent responses of the model, corresponding to two rotational movements, into an estimate of the sound direction in terms...

  9. Three dimensional global modeling of atmospheric CO2. Final technical report

    International Nuclear Information System (INIS)

    Fung, I.; Hansen, J.; Rind, D.

    1983-01-01

    A modeling effort has been initiated to study the prospects of extracting information on carbon dioxide sources and sinks from observed CO 2 variations. The approach uses a three-dimensional global transport model, based on winds from a 3-D general circulation model (GCM), to advect CO 2 noninteractively, i.e., as a tracer, with specified sources and sinks of CO 2 at the surface. This report identifies the 3-D model employed in this study and discusses biosphere, ocean and fossil fuel sources and sinks. Some preliminary model results are presented. 14 figures

  10. Comparison of three-dimensional ocean general circulation models on a benchmark problem

    International Nuclear Information System (INIS)

    Chartier, M.

    1990-12-01

    A french and an american Ocean General Circulation Models for deep-sea disposal of radioactive wastes are compared on a benchmark test problem. Both models are three-dimensional. They solve the hydrostatic primitive equations of the ocean with two different finite difference techniques. Results show that the dynamics simulated by both models are consistent. Several methods for the running of a model from a known state are tested in the French model: the diagnostic method, the prognostic method, the acceleration of convergence and the robust-diagnostic method

  11. Integration of a Three-Dimensional Process-Based Hydrological Model into the Object Modeling System

    Directory of Open Access Journals (Sweden)

    Giuseppe Formetta

    2016-01-01

    Full Text Available The integration of a spatial process model into an environmental modeling framework can enhance the model’s capabilities. This paper describes a general methodology for integrating environmental models into the Object Modeling System (OMS regardless of the model’s complexity, the programming language, and the operating system used. We present the integration of the GEOtop model into the OMS version 3.0 and illustrate its application in a small watershed. OMS is an environmental modeling framework that facilitates model development, calibration, evaluation, and maintenance. It provides innovative techniques in software design such as multithreading, implicit parallelism, calibration and sensitivity analysis algorithms, and cloud-services. GEOtop is a physically based, spatially distributed rainfall-runoff model that performs three-dimensional finite volume calculations of water and energy budgets. Executing GEOtop as an OMS model component allows it to: (1 interact directly with the open-source geographical information system (GIS uDig-JGrass to access geo-processing, visualization, and other modeling components; and (2 use OMS components for automatic calibration, sensitivity analysis, or meteorological data interpolation. A case study of the model in a semi-arid agricultural catchment is presented for illustration and proof-of-concept. Simulated soil water content and soil temperature results are compared with measured data, and model performance is evaluated using goodness-of-fit indices. This study serves as a template for future integration of process models into OMS.

  12. A three-dimensional non-isothermal model for a membraneless direct methanol redox fuel cell

    Science.gov (United States)

    Wei, Lin; Yuan, Xianxia; Jiang, Fangming

    2018-05-01

    In the membraneless direct methanol redox fuel cell (DMRFC), three-dimensional electrodes contribute to the reduction of methanol crossover and the open separator design lowers the system cost and extends its service life. In order to better understand the mechanisms of this configuration and further optimize its performance, the development of a three-dimensional numerical model is reported in this work. The governing equations of the multi-physics field are solved based on computational fluid dynamics methodology, and the influence of the CO2 gas is taken into consideration through the effective diffusivities. The numerical results are in good agreement with experimental data, and the deviation observed for cases of large current density may be related to the single-phase assumption made. The three-dimensional electrode is found to be effective in controlling methanol crossover in its multi-layer structure, while it also increases the flow resistance for the discharging products. It is found that the current density distribution is affected by both the electronic conductivity and the concentration of reactants, and the temperature rise can be primarily attributed to the current density distribution. The sensitivity and reliability of the model are analyzed through the investigation of the effects of cell parameters, including porosity values of gas diffusion layers and catalyst layers, methanol concentration and CO2 volume fraction, on the polarization characteristics.

  13. Three-Dimensional Printing of a Scalable Molecular Model and Orbital Kit for Organic Chemistry Teaching and Learning

    Science.gov (United States)

    Penny, Matthew R.; Cao, Zi Jing; Patel, Bhaven; dos Santos, Bruno Sil; Asquith, Christopher R. M.; Szulc, Blanka R.; Rao, Zenobia X.; Muwaffak, Zaid; Malkinson, John P.; Hilton, Stephen T.

    2017-01-01

    Three-dimensional (3D) chemical models are a well-established learning tool used to enhance the understanding of chemical structures by converting two-dimensional paper or screen outputs into realistic three-dimensional objects. While commercial atom model kits are readily available, there is a surprising lack of large molecular and orbital models…

  14. Explorable Three-Dimensional Digital Model of the Female Pelvis, Pelvic Contents, and Perineum for Anatomical Education

    Science.gov (United States)

    Sergovich, Aimee; Johnson, Marjorie; Wilson, Timothy D.

    2010-01-01

    The anatomy of the pelvis is complex, multilayered, and its three-dimensional organization is conceptually difficult for students to grasp. The aim of this project was to create an explorable and projectable stereoscopic, three-dimensional (3D) model of the female pelvis and pelvic contents for anatomical education. The model was created using…

  15. Three-dimensional dose-response models of competing risks and natural life span

    International Nuclear Information System (INIS)

    Raabe, O.G.

    1987-01-01

    Three-dimensional dose-rate/time/response surfaces for chronic exposure to carcinogens, toxicants, and ionizing radiation dramatically clarify the separate and interactive roles of competing risks. The three dimensions are average dose rate, exposure time, and risk. An illustration with computer graphics shows the contributions with the passage of time of the competing risks of death from radiation pneumonitis/fibrosis, lung cancer, and natural aging consequent to the inhalation of plutonium-239 dioxide by beagles. These relationships are further evaluated by mathematical stripping with three-dimensional illustrations that graphically show the resultant separate contribution of each fatal effect. Radiation pneumonitis predominates at high dose rates and lung cancer at intermediate dose rates. Low dose rates result in spontaneous deaths from natural aging, yielding a type of practical threshold for lung cancer induction. Risk assessment is benefited by the insights that become apparent with these three-dimensional models. The improved conceptualization afforded by them contributes to the planning and evaluation of epidemiological analyses and experimental studies involving chronic exposure to toxicants

  16. A physiologic three-dimensional cell culture system to investigate the role of decorin in matrix organisation and cell survival

    International Nuclear Information System (INIS)

    Seidler, Daniela G.; Schaefer, Liliana; Robenek, Horst; Iozzo, Renato V.; Kresse, Hans; Schoenherr, Elke

    2005-01-01

    In vivo cells exist in a three-dimensional environment generated and maintained by multiple cell-cell and cell-matrix interactions. Proteoglycans, like decorin, affect these complex interactions. Thus, we sought to investigate the role of decorin in a three-dimensional environment where the matrix was generated over time by decorin-deficient fibroblasts in the presence of L-ascorbic acid 2-phosphate. The cells were viable and proliferated in response to FGF2. Decorin was incorporated in the matrix and caused a ∼2 nm shift in the average diameter of the collagen fibrils, and the range and distribution of the fibrils became narrower and more uniform. Although there were no appreciable changes in collagen composition, we found that exogenous decorin induced the de novo synthesis of collagen I and V and cross-linked β (I). In the early phases of the three-dimensional culture, decorin reduced apoptosis. However, following the establishment of a three-dimensional matrix, the cells did not require decorin for their survival

  17. A three-dimensional radiative transfer model for shallow water environments.

    Science.gov (United States)

    Hedley, John

    2008-12-22

    A geometric optical model for three-dimensional radiative transfer capable of handling arbitrary arrangements of surfaces within anisotropic scattering media is described. The model operates by discretizing surfaces and volumes into patches and voxels and establishing the radiative transfer relationship between every pair of elements. In a plane-parallel configuration results for directional radiance agree closely with the numerical integration invariant imbedded method. Model accuracy for two examples incorporating surface water waves and complex benthic structures were assessed by conservation of energy, errors were less than 1%. Potential applications in remote sensing or photobiological studies of structurally complex benthos in shallow water environments are illustrated.

  18. Modeling flow and shear stress fields over unsteady three dimensional dunes

    Science.gov (United States)

    Hardy, Richard; Parsons, Dan; Ashworth, Phil; Reesink, Arjan; Best, Jim

    2014-05-01

    The flow field over dunes has been extensively measured in laboratory conditions and there is general understanding on the nature of the flow over dunes formed under equilibrium flow conditions. This has allowed an understanding of bed shear stress to be derived and the development of morpho-dynamic models. However, fluvial systems typically experience unsteady flow and therefore the sediment-water interface is constantly responding and reorganizing to these unsteady flows and stresses, over a range of both spatial and temporal scales. This is primarily through the adjustment of bed forms (including ripples, dunes and bar forms) which then subsequently alter the flow field. This paper investigates, through the application of a numerical model, the influence of these roughness elements on the overall flow and bed shear stress. A series of physical experiments were undertaken in a flume, 16m long and 2m wide, where a fine sand (D50 of 239µm) was water worked under a range of unsteady hydraulic conditions to generate a series of quasi-equilibrium three dimensional bed forms. During the experiments flow was measured with acoustic Doppler velocimeters, (aDv's). On four occasions the flume was drained and the bed topography measured with terrestrial LiDAR to create digital elevation models. This data provide the necessary boundary conditions and validation data for a numerical three dimensional flow model. The prediction of flow over the four static beds demonstrates the spatial distribution of shear stress and the potential sediment transport paths between the dune crests. These appear to be associated with coherent flow structures formed by localized shear flow. These flow predictions are currently being used to develop a fully three dimensional morphodynamic model to further understand dune dynamics under unsteady flow conditions.

  19. THREE DIMENSIONAL MODELING VIA PHOTOGRAPHS FOR DOCUMENTATION OF A VILLAGE BATH

    Directory of Open Access Journals (Sweden)

    H. B. Balta

    2013-07-01

    Full Text Available The aim of this study is supporting the conceptual discussions of architectural restoration with three dimensional modeling of monuments based on photogrammetric survey. In this study, a 16th century village bath in Ulamış, Seferihisar, and Izmir is modeled for documentation. Ulamış is one of the historical villages within which Turkish population first settled in the region of Seferihisar – Urla. The methodology was tested on an antique monument; a bath with a cubical form. Within the limits of this study, only the exterior of the bath was modeled. The presentation scale for the bath was determined as 1 / 50, considering the necessities of designing structural interventions and architectural ones within the scope of a restoration project. The three dimensional model produced is a realistic document presenting the present situation of the ruin. Traditional plan, elevation and perspective drawings may be produced from the model, in addition to the realistic textured renderings and wireframe representations. The model developed in this study provides opportunity for presenting photorealistic details of historical morphologies in scale. Compared to conventional drawings, the renders based on the 3d models provide an opportunity for conceiving architectural details such as color, material and texture. From these documents, relatively more detailed restitution hypothesis can be developed and intervention decisions can be taken. Finally, the principles derived from the case study can be used for 3d documentation of historical structures with irregular surfaces.

  20. Three-dimensional (3-D) Circumplex Model and revised scoring of FACES III.

    Science.gov (United States)

    Olson, D H

    1991-03-01

    FACES III can, however, continue to be a useful scale now that the Circumplex Model has been expanded into a three-dimensional design. Past and future studies would benefit from using FACES III as a linear dimension with high scores representing Balanced types and low scores representing Extreme types. This approach means that many past studies with FACES III need to be re-analyzed and/or re-interpreted in light of this 3-D Model. This revised scoring will significantly increase the number of studies that support the basic hypotheses of the Circumplex model, that Balanced families tend to function in more effective ways. It is clear from more recent work with the Clinical Rating Scale (CRS) that the lack of support for the curvilinear hypotheses of the Circumplex Model is due to the limitations of the FACES instrument and not the underlying theoretical model. The CRS clearly demonstrated the curvilinear pattern that has been hypothesized. It is important that future studies using FACES III analyze data in a linear way that fits with the three-dimensional model. In this way, there is a better match conceptually and methodologically between FACES III and the Circumplex Model. It is also highly recommended that future studies use both the self-report of FACES and the observational approaches to family assessment of the Clinical Rating Scale. This combined approach will help advance the field conceptually, methodologically, and clinically.

  1. On the use of effective stress in three-dimensional hydro-mechanical coupled model

    International Nuclear Information System (INIS)

    Arairo, W.; Prunier, F.; Djeran-Maigre, I.; Millard, A.

    2014-01-01

    In the last decades, a number of hydro-mechanical elastoplastic constitutive models for unsaturated soils have been proposed. Those models couple the hydraulic and mechanical behaviour of unsaturated soils, and take into account the effects of the degree of saturation on the stress-strain behaviour and the effects of deformation on the soil-water characteristic response with a simple reversible part for the hysteresis. In addition, the influence of the suction on the stress-strain behaviour is considered. However, until now, few models predict the stress-strain and soil-water characteristic responses of unsaturated soils in a fully three-dimensional Finite Element code. This paper presents the predictions of an unsaturated soil model in a Three-dimensional Framework, and develops a study on the effect of partial saturation on the stability of shallow foundation resting on unsaturated silty soil. Qualitative predictions of the constitutive model show that incorporating a special formulation for the effective stress into an elastoplastic coupled hydro-mechanical model opens a full range of possibilities in modelling unsaturated soil behaviour. (authors)

  2. Three-dimensional two-phase mass transport model for direct methanol fuel cells

    International Nuclear Information System (INIS)

    Yang, W.W.; Zhao, T.S.; Xu, C.

    2007-01-01

    A three-dimensional (3D) steady-state model for liquid feed direct methanol fuel cells (DMFC) is presented in this paper. This 3D mass transport model is formed by integrating five sub-models, including a modified drift-flux model for the anode flow field, a two-phase mass transport model for the porous anode, a single-phase model for the polymer electrolyte membrane, a two-phase mass transport model for the porous cathode, and a homogeneous mist-flow model for the cathode flow field. The two-phase mass transport models take account the effect of non-equilibrium evaporation/ condensation at the gas-liquid interface. A 3D computer code is then developed based on the integrated model. After being validated against the experimental data reported in the literature, the code was used to investigate numerically transport behaviors at the DMFC anode and their effects on cell performance

  3. Three-dimensional patient-specific cardiac model for surgical planning in Nikaidoh procedure.

    Science.gov (United States)

    Valverde, Israel; Gomez, Gorka; Gonzalez, Antonio; Suarez-Mejias, Cristina; Adsuar, Alejandro; Coserria, Jose Felix; Uribe, Sergio; Gomez-Cia, Tomas; Hosseinpour, Amir Reza

    2015-04-01

    To explore the use of three-dimensional patient-specific cardiovascular models using rapid prototyping techniques (fused deposition modelling) to improve surgical planning in patients with complex congenital heart disease. Rapid prototyping techniques are used to print accurate three-dimensional replicas of patients' cardiovascular anatomy based on magnetic resonance images using computer-aided design systems. Models are printed using a translucent polylactic acid polymer. As a proof of concept, a model of the heart of a 1.5-year-old boy with transposition of the great arteries, ventricular septal defect and pulmonary stenosis was constructed to help planning the surgical correction. The cardiac model allowed the surgeon to evaluate the location and dimensions of the ventricular septal defect as well as its relationship with the aorta and pulmonary artery. Cardiovascular models constructed by rapid prototyping techniques are extremely helpful for planning corrective surgery in patients with complex congenital malformations. Therefore they may potentially reduce operative time and morbi-mortality.

  4. A three-dimensional model for T-shaped acoustic resonators with sound absorption materials.

    Science.gov (United States)

    Yu, Ganghua; Cheng, Li; Li, Deyu

    2011-05-01

    Recent development in noise control using T-shaped acoustic resonators calls for the development of more reliable and accurate models to predict their acoustic characteristics, which is unfortunately lacking in the literature. This paper attempts to establish such a model based on three-dimensional theory for T-shaped acoustic resonators containing sound absorption materials. The model is validated by experiments using various configurations. Predictions on fundamental and high-order resonance frequencies are compared with those obtained from the one-dimensional model and finite element analyses, and the effects of the physical and geometric parameters of the absorption materials on the resonance frequencies and Q-factor are also investigated numerically and experimentally. Limitations and applicability of existing one-dimensional models are assessed. The proposed general three-dimensional model proved to be able to provide an accurate and reliable prediction on the resonance frequencies for T-shaped acoustic resonators with or without absorption materials. This can eventually meet the requirement for resonator array design in terms of accuracy.

  5. A Simple Technique For Visualising Three Dimensional Models in Landscape Contexts

    Directory of Open Access Journals (Sweden)

    Stuart Jeffrey

    2001-05-01

    Full Text Available One of the Scottish Early Medieval Sculptured Stones project (SEMSS project's objectives is to generate accurate three dimensional models of these monuments using a variety of data capture techniques from photogrammetry to Time of Flight laser measurement. As the landscape context of these monuments is often considered crucial to their understanding, the model's ultimate presentation to the user should include some level of contextual information. In addition there are a number of presentation issues that must be considered such as interactivity, the relationship of reconstructed to non-reconstructed sections, lighting and suitability for presentation over the WWW. This article discusses the problem of presenting three dimensional models of monumental stones in their landscape contexts. This problem is discussed in general, but special attention is paid to the difficulty of capturing landscape detail,interactivity, reconstructing landscapes and providing accurate representations of landscapes to the horizon. Comparison is made between 3D modelling packages and Internet specific presentation formats such as VRML and QTVR. The proposed technique provides some level of interactivity as well as photorealistic landscape representation extended to the horizon, without the need for a complete DEM/DTM, thereby making file sizes manageable and capable of WWW presentation. It also allows for the issues outlined to be tackled in a more efficient manner than by using either 3D modelling or QTVR on their own.

  6. Three dimensional modeling of laterally loaded pile groups resting in sand

    Directory of Open Access Journals (Sweden)

    Amr Farouk Elhakim

    2016-04-01

    Full Text Available Many structures often carry lateral loads due to earth pressure, wind, earthquakes, wave action and ship impact. The accurate predictions of the load–displacement response of the pile group as well as the straining actions are needed for a safe and economic design. Most research focused on the behavior of laterally loaded single piles though piles are most frequently used in groups. Soil is modeled as an elastic-perfectly plastic model using the Mohr–Coulomb constitutive model. The three-dimensional Plaxis model is validated using load–displacement results from centrifuge tests of laterally loaded piles embedded in sand. This study utilizes three dimensional finite element modeling to better understand the main parameters that affect the response of laterally loaded pile groups (2 × 2 and 3 × 3 pile configurations including sand relative density, pile spacing (s = 2.5 D, 5 D and 8 D and pile location within the group. The fixity of the pile head affects its load–displacement under lateral loading. Typically, the pile head may be unrestrained (free head as the pile head is allowed to rotate, or restrained (fixed head condition where no pile head rotation is permitted. The analyses were performed for both free and fixed head conditions.

  7. Scrapie prions: a three-dimensional model of an infectious fragment.

    Science.gov (United States)

    Huang, Z; Prusiner, S B; Cohen, F E

    1996-01-01

    A conformational change seems to represent the major difference between the scrapie prion protein (PrPSc) and its normal cellular isoform (PrPC). We recently proposed a set of four helix bundle models for the three-dimensional structure of PrPC that are consistent with a variety of spectroscopic and genetic data. We report a plausible model for the three-dimensional structure of a biologically important fragment of PrPSc. The model of residues 108-218 was constructed by an approach that combines computational techniques and experimental data. The proposed structures of this fragment of PrPSc display a four-stranded beta-sheet covered on one face by two alpha-helices. Residues implicated in the prion species barrier are found to cluster on the solvent-accessible surface of the beta-sheet of one of the models. This interface could provide a structural template that would assist the conversion of PrPC to PrPSc and hence direct prion propagation. Molecular models of the PrP isoforms should prove very useful in developing structural hypotheses about the process by which PrPC is transformed into PrPSc, the mechanisms by which PrP gene mutations give rise to the inherited human prion diseases, and the species barrier that seems to protect humans from animal prions. It seems likely that PrPC represents a kinetically trapped intermediate in PrP folding.

  8. Verification and Validation of a Three-Dimensional Orthotropic Plasticity Constitutive Model Using a Unidirectional Composite

    Directory of Open Access Journals (Sweden)

    Canio Hoffarth

    2017-03-01

    Full Text Available A three-dimensional constitutive model has been developed for modeling orthotropic composites subject to impact loads. It has three distinct components—a deformation model involving elastic and plastic deformations; a damage model; and a failure model. The model is driven by tabular data that is generated either using laboratory tests or via virtual testing. A unidirectional composite—T800/F3900, commonly used in the aerospace industry, is used in the verification and validation tests. While the failure model is under development, these tests indicate that the implementation of the deformation and damage models in a commercial finite element program, LS-DYNA, is efficient, robust and accurate.

  9. Inhibitory effect of progesterone on cervical tissue formation in a three-dimensional culture system with human cervical fibroblasts.

    Science.gov (United States)

    House, Michael; Tadesse-Telila, Serkalem; Norwitz, Errol R; Socrate, Simona; Kaplan, David L

    2014-01-01

    Progesterone supplementation is recommended to prevent preterm birth in women with a short cervix, but the mechanism is unclear. We hypothesize that progesterone acts by altering the composition of the cervical extracellular matrix (ECM). We tested this hypothesis using human cervical fibroblasts in both two-dimensional (2D) and three-dimensional (3D) cultures. For 2D culture, cells were seeded in 6-well plates and cultured with media supplemented with estradiol (10(-8) M), progesterone (10(-7) or 10(-6) M), and vehicle. For 3D culture, the cells were cultured on a porous silk protein scaffold system. Progesterone and estrogen receptors were documented by immunohistochemistry and Western blot analysis. In both 2D and 3D cultures, decreased collagen synthesis was seen with increased progesterone concentration. Three-dimensional cultures could be maintained significantly longer than 2D cultures, and the morphology of 3D cultures appeared similar to native cervical tissue. Thus, further studies were performed in 3D culture. To determine the effect of progesterone concentration, the 3D scaffolds were cultured with estradiol (10(-8) M) and five conditions: vehicle; 10(-9), 10(-8), or 10(-7) M progesterone; or 10(-7) M progesterone plus 10(-6) M mifepristone. The highest progesterone concentration correlated with the least amount of collagen synthesis. Collagen synthesis progressively increased as progesterone concentration decreased. This effect was partially antagonized by mifepristone, suggesting the mechanism is mediated by the progesterone receptor. This hormonally responsive 3D culture system supports the hypothesis that progesterone has a direct effect on remodeling cervical ECM during pregnancy. The 3D culture system could be useful for studying the mechanism of progesterone effects on the cervix.

  10. Inhibitory Effect of Progesterone on Cervical Tissue Formation in a Three-Dimensional Culture System with Human Cervical Fibroblasts1

    Science.gov (United States)

    House, Michael; Tadesse-Telila, Serkalem; Norwitz, Errol R.; Socrate, Simona; Kaplan, David L.

    2013-01-01

    ABSTRACT Progesterone supplementation is recommended to prevent preterm birth in women with a short cervix, but the mechanism is unclear. We hypothesize that progesterone acts by altering the composition of the cervical extracellular matrix (ECM). We tested this hypothesis using human cervical fibroblasts in both two-dimensional (2D) and three-dimensional (3D) cultures. For 2D culture, cells were seeded in 6-well plates and cultured with media supplemented with estradiol (10−8 M), progesterone (10−7 or 10−6 M), and vehicle. For 3D culture, the cells were cultured on a porous silk protein scaffold system. Progesterone and estrogen receptors were documented by immunohistochemistry and Western blot analysis. In both 2D and 3D cultures, decreased collagen synthesis was seen with increased progesterone concentration. Three-dimensional cultures could be maintained significantly longer than 2D cultures, and the morphology of 3D cultures appeared similar to native cervical tissue. Thus, further studies were performed in 3D culture. To determine the effect of progesterone concentration, the 3D scaffolds were cultured with estradiol (10−8 M) and five conditions: vehicle; 10−9, 10−8, or 10−7 M progesterone; or 10−7 M progesterone plus 10−6 M mifepristone. The highest progesterone concentration correlated with the least amount of collagen synthesis. Collagen synthesis progressively increased as progesterone concentration decreased. This effect was partially antagonized by mifepristone, suggesting the mechanism is mediated by the progesterone receptor. This hormonally responsive 3D culture system supports the hypothesis that progesterone has a direct effect on remodeling cervical ECM during pregnancy. The 3D culture system could be useful for studying the mechanism of progesterone effects on the cervix. PMID:24285720

  11. Teratoma formation of human embryonic stem cells in three-dimensional perfusion culture bioreactors.

    Science.gov (United States)

    Stachelscheid, H; Wulf-Goldenberg, A; Eckert, K; Jensen, J; Edsbagge, J; Björquist, P; Rivero, M; Strehl, R; Jozefczuk, J; Prigione, A; Adjaye, J; Urbaniak, T; Bussmann, P; Zeilinger, K; Gerlach, J C

    2013-09-01

    Teratoma formation in mice is today the most stringent test for pluripotency that is available for human pluripotent cells, as chimera formation and tetraploid complementation cannot be performed with human cells. The teratoma assay could also be applied for assessing the safety of human pluripotent cell-derived cell populations intended for therapeutic applications. In our study we examined the spontaneous differentiation behaviour of human embryonic stem cells (hESCs) in a perfused 3D multi-compartment bioreactor system and compared it with differentiation of hESCs and human induced pluripotent cells (hiPSCs) cultured in vitro as embryoid bodies and in vivo in an experimental mouse model of teratoma formation. Results from biochemical, histological/immunohistological and ultrastuctural analyses revealed that hESCs cultured in bioreactors formed tissue-like structures containing derivatives of all three germ layers. Comparison with embryoid bodies and the teratomas revealed a high degree of similarity of the tissues formed in the bioreactor to these in the teratomas at the histological as well as transcriptional level, as detected by comparative whole-genome RNA expression profiling. The 3D culture system represents a novel in vitro model that permits stable long-term cultivation, spontaneous multi-lineage differentiation and tissue formation of pluripotent cells that is comparable to in vivo differentiation. Such a model is of interest, e.g. for the development of novel cell differentiation strategies. In addition, the 3D in vitro model could be used for teratoma studies and pluripotency assays in a fully defined, controlled environment, alternatively to in vivo mouse models. Copyright © 2012 John Wiley & Sons, Ltd.

  12. Electronic transport on the spatial structure of the protein: Three-dimensional lattice model

    International Nuclear Information System (INIS)

    Sarmento, R.G.; Frazão, N.F.; Macedo-Filho, A.

    2017-01-01

    Highlights: • The electronic transport on the structure of the three-dimensional lattice model of the protein is studied. • The signing of the current–voltage is directly affected by permutations of the weak bonds in the structure. • Semiconductor behave of the proteins suggest a potential application in the development of novel biosensors. - Abstract: We report a numerical analysis of the electronic transport in protein chain consisting of thirty-six standard amino acids. The protein chains studied have three-dimensional structure, which can present itself in three distinct conformations and the difference consist in the presence or absence of thirteen hydrogen-bondings. Our theoretical method uses an electronic tight-binding Hamiltonian model, appropriate to describe the protein segments modeled by the amino acid chain. We note that the presence and the permutations between weak bonds in the structure of proteins are directly related to the signing of the current–voltage. Furthermore, the electronic transport depends on the effect of temperature. In addition, we have found a semiconductor behave in the models investigated and it suggest a potential application in the development of novel biosensors for molecular diagnostics.

  13. Electronic transport on the spatial structure of the protein: Three-dimensional lattice model

    Energy Technology Data Exchange (ETDEWEB)

    Sarmento, R.G. [Departamento de Ciências Biológicas, Universidade Federal do Piauí, 64800-000 Floriano, PI (Brazil); Frazão, N.F. [Centro de Educação e Saúde, Universidade Federal de Campina Grande, 581750-000 Cuité, PB (Brazil); Macedo-Filho, A., E-mail: amfilho@gmail.com [Campus Prof. Antonio Geovanne Alves de Sousa, Universidade Estadual do Piauí, 64260-000 Piripiri, PI (Brazil)

    2017-01-30

    Highlights: • The electronic transport on the structure of the three-dimensional lattice model of the protein is studied. • The signing of the current–voltage is directly affected by permutations of the weak bonds in the structure. • Semiconductor behave of the proteins suggest a potential application in the development of novel biosensors. - Abstract: We report a numerical analysis of the electronic transport in protein chain consisting of thirty-six standard amino acids. The protein chains studied have three-dimensional structure, which can present itself in three distinct conformations and the difference consist in the presence or absence of thirteen hydrogen-bondings. Our theoretical method uses an electronic tight-binding Hamiltonian model, appropriate to describe the protein segments modeled by the amino acid chain. We note that the presence and the permutations between weak bonds in the structure of proteins are directly related to the signing of the current–voltage. Furthermore, the electronic transport depends on the effect of temperature. In addition, we have found a semiconductor behave in the models investigated and it suggest a potential application in the development of novel biosensors for molecular diagnostics.

  14. Three-dimensional flow structure measurements behind a queue of studied model vehicles

    International Nuclear Information System (INIS)

    Huang, J.F.; Chan, T.L.; Zhou, Y.

    2009-01-01

    The three-dimensional flow structures of a queue of studied model vehicles (i.e., one-, two- and three-vehicle cases) were investigated comprehensively in a closed-circuit wind tunnel using particle image velocimetry (PIV) for the typical urban vehicle speeds (i.e., 10, 30 and 50 km/h). In this three-dimensional vehicle wake, a pair of longitudinal vortices is characterized by counter-rotating and moving downstream at relatively low velocity than their surrounding flow. The flow structures of multiple studied model vehicles are dominated by the wake generated from the last studied model vehicle but the preceding studied model vehicle(s) also has/have some minor effects. Cross-sectional turbulence distribution is non-uniform in the far-wake region for all studied cases. The lowest turbulence occurs at the center part of the vehicle wake while high turbulence occurs at its two sides. As such, it may lead to considerable underestimation in turbulence magnitude if the measurement is only taken along the centerline of the vehicle wake.

  15. THREE-DIMENSIONAL GEOFILTRATIONAL MODEL OF THE ROGUN HYDRO POWER PLANT CONSTRUCTION SITE

    Directory of Open Access Journals (Sweden)

    Khokhotva Sergey Nikolaevich

    2017-05-01

    Full Text Available The article deals with technique of creation and results of calculations of the three-dimensional geofiltrational model of the Rogun HPP construction site. When performing works on creation of the Rogun HPP three-dimensional geofiltration model, geological and hydrogeological conditions of the Rogun HPP construction site were analyzed. They showed that the construction site consists mostly of fractured rocks of various weathering degrees. In terms of preservation, four preservation zones were identified in the rock mass. These zones define the features of hydrogeological conditions that have emerged in the area of construction. Calculation results illustrated the absence of seepage areas on the lower slope of dam; this is the indication of normal operation of the dam impervious circuit. The drainage system of the underground hydropower plant has a high efficiency. Operation of the drainage galleries complex leads to a significant reduction of piezometric pressure on roofs of the machine and transformer halls. Above the underground structures a completely drained area is formed. Completed forecast calculations on geofiltration model of the Rogun hydropower plant determine the hydrostatic pressure and piezometric pressure at any point of the modeled area. These data can be used as loads while designing of lining of underground workings.

  16. Three-Dimensional Transient Electromagnetic Modeling Based on Fictitious Wave Domain Methods

    Science.gov (United States)

    Ji, Yanju; Hu, Yanpu; Imamura, Naoto

    2017-05-01

    Finite-difference time domain (FDTD) methods, which have been widely employed in three-dimensional transient electromagnetic (TEM) modeling, require very small time steps to simulate the electromagnetic fields and this will be time consuming. We present an efficient numerical method for three-dimensional TEM forward modeling. Its key features are based on a correspondence principle between the diffusive and fictitious wave fields. The diffusive Maxwell's equations are transformed and solved in a so-called fictitious wave domain. This scheme allows larger time steps than conventional FDTD methods, allows including air layers, and allows simulating topography. The need for initial field calculations is avoided by including an electric current source in the governing equations. This also avoids a traditional assumption of a flat earth surface in TEM modeling. We test the accuracy of the electromagnetic fields' responses using our method with the spectral differential difference (SLDM) solutions. The results show good agreement even under the existence of air layers and topography in the model.

  17. Increasingly transformed MCF-10A cells have a progressively tumor-like phenotype in three-dimensional basement membrane culture

    Directory of Open Access Journals (Sweden)

    Imbalzano Anthony N

    2009-03-01

    Full Text Available Abstract Background MCF-10A cells are near diploid and normal human mammary epithelial cells. In three-dimensional reconstituted basement membrane culture, they undergo a well-defined program of proliferation, differentiation, and growth arrest, forming acinar structures that recapitulate many aspects of mammary architecture in vivo. The pre-malignant MCF-10AT cells and malignant MCF-10CA1a lines were sequentially derived from the MCF-10A parental cell line first by expression of a constitutively active T24 H-Ras generating the MCF-10AT cell line. This was followed by repeated selection for increasingly aggressive tumor formation from cells recovered from xenograft tumors in immuno-compromised mice, generating the MCF-10CA1a cell line. When inoculated subcutaneously into the flanks of immuno-compromised mice, MCF-10AT cells occasionally form tumors, whereas MCF-10CA1a cells invariably form tumors with a shorter latency than MCF-10AT derived tumors. Results MCF-10AT cells grown in three-dimensional basement membrane culture form complex multi-acinar structures that produce a basement membrane but undergo delayed cell cycle arrest and have incomplete luminal development. MCF-10CA1a cells grown in three-dimensional basement membrane culture form large, hyper-proliferative masses, that retain few characteristics of MCF10A acini and more closely resemble tumors. Conclusion Here we report on the growth and differentiation properties of these three matched cell lines in three-dimensional basement membrane culture. Features of tissue morphogenesis were assessed, including proliferation, basement membrane formation, polarization of alpha-6 beta-4 integrin to the basement membrane, formation of cell:cell junctions, and apoptosis for luminal clearance. The matched series of normal MCF-10A, pre-malignant MCF-10AT, and malignant MCF-10CA1a cells offers a unique opportunity to study the mechanisms of malignant progression both in a three-dimensional

  18. Polarized Trafficking of AQP2 Revealed in Three Dimensional Epithelial Culture.

    Directory of Open Access Journals (Sweden)

    William L Rice

    Full Text Available In renal collecting duct (CD principal cells (PCs, vasopressin (VP acts through its receptor, V2R, to increase intracellular cAMP leading to phosphorylation and apical membrane accumulation of the water channel aquaporin 2 (AQP2. The trafficking and function of basolaterally located AQP2 is, however, poorly understood. Here we report the successful application of a 3-dimensional Madin-Darby canine kidney (MDCK epithelial model to study polarized AQP2 trafficking. This model recapitulates the luminal architecture of the CD and bi-polarized distribution of AQP2 as seen in kidney. Without stimulation, AQP2 is located in the subapical and basolateral regions. Treatment with VP, forskolin (FK, or 8-(4-Chlorophenylthio-2'-O-methyladenosine 3',5'-cyclic monophosphate monosodium hydrate (CPT-cAMP leads to translocation of cytosolic AQP2 to the apical membrane, but not to the basolateral membrane. Treating cells with methyl-β-cyclodextrin (mβCD to acutely block endocytosis causes accumulation of AQP2 on the basolateral membrane, but not on the apical membrane. Our data suggest that AQP2 may traffic differently at the apical and basolateral domains in this 3D epithelial model. In addition, application of a panel of phosphorylation specific AQP2 antibodies reveals the polarized, subcellular localization of differentially phosphorylated AQP2 at S256, S261, S264 and S269 in the 3D culture model, which is consistent with observations made in the CDs of VP treated animals, suggesting the preservation of phosphorylation dependent regulatory mechanism of AQP2 trafficking in this model. Therefore we have established a 3D culture model for the study of trafficking and regulation of both the apical and basolaterally targeted AQP2. The new model will enable further characterization of the complex mechanism regulating bi-polarized trafficking of AQP2 in vitro.

  19. Three-dimensional conceptual model for the Hanford Site unconfined aquifer system: FY 1994 status report

    Energy Technology Data Exchange (ETDEWEB)

    Thorne, P.D.; Chamness, M.A.; Vermeul, V.R.; Macdonald, Q.C.; Schubert, S.E.

    1994-11-01

    This report documents work conducted during the fiscal year 1994 to development an improved three-dimensional conceptual model of ground-water flow in the unconfined aquifer system across the Hanford Site Ground-Water Surveillance Project, which is managed by Pacific Northwest Laboratory. The main objective of the ongoing effort to develop an improved conceptual model of ground-water flow is to provide the basis for improved numerical report models that will be capable of accurately predicting the movement of radioactive and chemical contaminant plumes in the aquifer beneath Hanford. More accurate ground-water flow models will also be useful in assessing the impacts of changes in facilities and operations. For example, decreasing volumes of operational waste-water discharge are resulting in a declining water table in parts of the unconfined aquifer. In addition to supporting numerical modeling, the conceptual model also provides a qualitative understanding of the movement of ground water and contaminants in the aquifer.

  20. A three-dimensional meso-macroscopic model for Li-Ion intercalation batteries

    Science.gov (United States)

    Allu, S.; Kalnaus, S.; Simunovic, S.; Nanda, J.; Turner, J. A.; Pannala, S.

    2016-09-01

    In this paper we present a three-dimensional computational formulation for electrode-electrolyte-electrode system of Li-Ion batteries. The physical consistency between electrical, thermal and chemical equations is enforced at each time increment by driving the residual of the resulting coupled system of nonlinear equations to zero. The formulation utilizes a rigorous volume averaging approach typical of multiphase formulations used in other fields and recently extended to modeling of supercapacitors [1]. Unlike existing battery modeling methods which use segregated solution of conservation equations and idealized geometries, our unified approach can model arbitrary battery and electrode configurations. The consistency of multi-physics solution also allows for consideration of a wide array of initial conditions and load cases. The formulation accounts for spatio-temporal variations of material and state properties such as electrode/void volume fractions and anisotropic conductivities. The governing differential equations are discretized using the finite element method and solved using a nonlinearly consistent approach that provides robust stability and convergence. The new formulation was validated for standard Li-ion cells and compared against experiments. Its scope and ability to capture spatio-temporal variations of potential and lithium distribution is demonstrated on a prototypical three-dimensional electrode problem.

  1. Differences in growth properties of endometrial cancer in three dimensional (3D) culture and 2D cell monolayer

    International Nuclear Information System (INIS)

    Chitcholtan, Kenny; Asselin, Eric; Parent, Sophie; Sykes, Peter H.; Evans, John J.

    2013-01-01

    Three-dimensional (3D) in vitro models have an invaluable role in understanding the behaviour of tumour cells in a well defined microenvironment. This is because some aspects of tumour characteristics cannot be fully recapitulated in a cell monolayer (2D). In the present study, we compared growth patterns, expression of signalling molecules, and metabolism-associated proteins of endometrial cancer cell lines in 3D and 2D cell cultures. Cancer cells formed spherical structures in 3D reconstituted basement membrane (3D rBM), and the morphological appearance was cell line dependent. Cell differentiation was observed after 8 days in the 3D rBM. There was reduced proliferation, detected by less expression of PCNA in 3D rBM than in 2D cell monolayers. The addition of exogenous epidermal growth factor (EGF) to cancer cells induced phosphorylation of EGFR and Akt in both cell culture conditions. The uptake of glucose was selectively altered in the 3D rBM, but there was a lack of association with Glut-1 expression. The secretion of vascular endothelial growth factor (VEGF) and prostaglandin E 2 (PGE 2 ) was selectively altered in 3D rBM, and it was cell line dependent. Our data demonstrated that 3D rBM as an in vitro model can influence proliferation and metabolism of endometrial cancer cell behaviour compared to 2D cell monolayer. Changes are specific to individual cell types. The use of 3D rBM is, therefore, important in the in vitro study of targeted anticancer therapies.

  2. Differences in growth properties of endometrial cancer in three dimensional (3D) culture and 2D cell monolayer

    Energy Technology Data Exchange (ETDEWEB)

    Chitcholtan, Kenny, E-mail: kenny.chitcholtan@otago.ac.nz [Department of Obstetrics and Gynaecology, University of Otago, Christchurch, 2 Riccarton Avenue, Christchurch 8011 (New Zealand); Asselin, Eric, E-mail: Eric.Asselin@uqtr.ca [Department of Chemistry and Biology, University of Quebec, at Trois-Rivières, C.P. 500, Trois-Rivières, Quebec, Canada G9A 5H7 (Canada); Parent, Sophie, E-mail: Sophie.Parent@uqtr.ca [Department of Chemistry and Biology, University of Quebec, at Trois-Rivières, C.P. 500, Trois-Rivières, Quebec, Canada G9A 5H7 (Canada); Sykes, Peter H., E-mail: peter.sykes@otago.ac.nz [Department of Obstetrics and Gynaecology, University of Otago, Christchurch, 2 Riccarton Avenue, Christchurch 8011 (New Zealand); Evans, John J., E-mail: john.evans@otago.ac.nz [Department of Obstetrics and Gynaecology, University of Otago, Christchurch, 2 Riccarton Avenue, Christchurch 8011 (New Zealand); Centre of Neuroendocrinology and The MacDiarmid Institute of Advanced Materials and Nanotechnology, University of Otago, Christchurch, 2 Riccarton Avenue, Christchurch 8011 (New Zealand)

    2013-01-01

    Three-dimensional (3D) in vitro models have an invaluable role in understanding the behaviour of tumour cells in a well defined microenvironment. This is because some aspects of tumour characteristics cannot be fully recapitulated in a cell monolayer (2D). In the present study, we compared growth patterns, expression of signalling molecules, and metabolism-associated proteins of endometrial cancer cell lines in 3D and 2D cell cultures. Cancer cells formed spherical structures in 3D reconstituted basement membrane (3D rBM), and the morphological appearance was cell line dependent. Cell differentiation was observed after 8 days in the 3D rBM. There was reduced proliferation, detected by less expression of PCNA in 3D rBM than in 2D cell monolayers. The addition of exogenous epidermal growth factor (EGF) to cancer cells induced phosphorylation of EGFR and Akt in both cell culture conditions. The uptake of glucose was selectively altered in the 3D rBM, but there was a lack of association with Glut-1 expression. The secretion of vascular endothelial growth factor (VEGF) and prostaglandin E{sub 2} (PGE{sub 2}) was selectively altered in 3D rBM, and it was cell line dependent. Our data demonstrated that 3D rBM as an in vitro model can influence proliferation and metabolism of endometrial cancer cell behaviour compared to 2D cell monolayer. Changes are specific to individual cell types. The use of 3D rBM is, therefore, important in the in vitro study of targeted anticancer therapies.

  3. Three-dimensional plasma simulation models and their application to magnetically confined plasmas

    International Nuclear Information System (INIS)

    Okuda, H.

    1977-03-01

    Three-dimensional plasma simulation models using particles have been described and applied to the various microscopic processes in a plasma in a magnetic field. The model makes use of the hybrid approach using eigenfunction expansion in one direction and multipole expansion on a two-dimensional spatial grid introduced in the cross section of a plasma. The models for cylindrical and toroidal systems correctly reproduce the expected fluctuation spectrum in thermal equilibrium. Application to the study of anomalous plasma diffusion due to collisionless drift instabilities in a cylindrical plasma is shown. Some considerations are given as to how to construct a quasi-neutral particle simulation model and particle-fluid hybrid plasma model which eliminate the high frequency oscillations associated with the electrons

  4. FRiED: A Novel Three-dimensional Model of Coronal Mass Ejections

    Science.gov (United States)

    Isavnin, A.

    2016-12-01

    We present a novel three-dimensional (3D) model of coronal mass ejections (CMEs) that unifies all key evolutionary aspects of CMEs and encapsulates their 3D magnetic field configuration. This fully analytic model is capable of reproducing the global geometrical shape of a CME with all major deformations taken into account, I.e., deflection, rotation, expansion, “pancaking,” front flattening, and rotational skew. Encapsulation of 3D magnetic structure allows the model to reproduce in-situ measurements of magnetic field for trajectories of spacecraft-CME encounters of any degree of complexity. As such, the model can be used single-handedly for the consistent analysis of both remote and in-situ observations of CMEs at any heliocentric distance. We demonstrate the latter by successfully applying the model for the analysis of two CMEs.

  5. Computer-aided-design-model-assisted absolute three-dimensional shape measurement.

    Science.gov (United States)

    Li, Beiwen; Bell, Tyler; Zhang, Song

    2017-08-20

    Conventional three-dimensional (3D) shape measurement methods are typically generic to all types of objects. Yet, for many measurement conditions, such a level of generality is inessential when having the preknowledge of the object geometry. This paper introduces a novel adaptive algorithm for absolute 3D shape measurement with the assistance of the object computer-aided-design (CAD) model. The proposed algorithm includes the following major steps: (1) export the 3D point cloud data from the CAD model; (2) transform the CAD model into the camera perspective; (3) obtain a wrapped phase map from three phase-shifted fringe images; and (4) retrieve absolute phase and 3D geometry assisted by the CAD model. We demonstrate that if object CAD models are available, such an algorithm is efficient in recovering absolute 3D geometries of both simple and complex objects with only three phase-shifted fringe images.

  6. FITTING A THREE DIMENSIONAL PEM FUEL CELL MODEL TO MEASUREMENTS BY TUNING THE POROSITY AND

    DEFF Research Database (Denmark)

    Bang, Mads; Odgaard, Madeleine; Condra, Thomas Joseph

    2004-01-01

    the distribution of current density and further how thisaffects the polarization curve.The porosity and conductivity of the catalyst layer are some ofthe most difficult parameters to measure, estimate and especiallycontrol. Yet the proposed model shows how these two parameterscan have significant influence...... on the performance of the fuel cell.The two parameters are shown to be key elements in adjusting thethree-dimensional model to fit measured polarization curves.Results from the proposed model are compared to single cellmeasurements on a test MEA from IRD Fuel Cells.......A three-dimensional, computational fluid dynamics (CFD) model of a PEM fuel cell is presented. The model consists ofstraight channels, porous gas diffusion layers, porous catalystlayers and a membrane. In this computational domain, most ofthe transport phenomena which govern the performance of the...

  7. Three-dimensional hydrological and thermal property models of Yucca Mountain, Nevada

    International Nuclear Information System (INIS)

    Rautman, C.A.; McKenna, S.A.

    1997-11-01

    This report describes the creation of three-dimensional numerical models of selected rock-matrix properties for the region of the potential high-level nuclear waste repository site at Yucca Mountain, which is located in southern Nevada. The models have been generated for a majority of the unsaturated and shallow saturated zone within an area referred to within the Yucca Mountain Site Characterization project as the site area. They comprise a number of material properties of importance both to detailed process-level modeling activities and to more summary-style performance assessment modeling. The material properties within these models are both spatially variable (heterogeneous) and spatially correlated, as the rocks are understood from data obtained from site-characterization drill holes widely scattered across the site area

  8. Three-Dimensional Assembly Tolerance Analysis Based on the Jacobian-Torsor Statistical Model

    Directory of Open Access Journals (Sweden)

    Peng Heping

    2017-01-01

    Full Text Available The unified Jacobian-Torsor model has been developed for deterministic (worst case tolerance analysis. This paper presents a comprehensive model for performing statistical tolerance analysis by integrating the unified Jacobian-Torsor model and Monte Carlo simulation. In this model, an assembly is sub-divided into surfaces, the Small Displacements Torsor (SDT parameters are used to express the relative position between any two surfaces of the assembly. Then, 3D dimension-chain can be created by using a surface graph of the assembly and the unified Jacobian-Torsor model is developed based on the effect of each functional element on the whole functional requirements of products. Finally, Monte Carlo simulation is implemented for the statistical tolerance analysis. A numerical example is given to demonstrate the capability of the proposed method in handling three-dimensional assembly tolerance analysis.

  9. Prediction of the three-dimensional structure of aflatoxin of Aspergillus flavus by homology modelling.

    Science.gov (United States)

    Kasoju, Aruna; Narasu, M Lakshmi; Muvva, Charuvaka; Subbarao, Bathula Vv

    2012-01-01

    Aflatoxins are polyketide-derived secondary metabolites produced by Aspergillus spp. The toxic effects of aflatoxins have adverse consequences for human health and agricultural economics. The aflR gene, a regulatory gene for aflatoxin biosynthesis, encodes a protein containing a zinc-finger DNA-binding motif. AFLR-Protein three-dimensional model was generated using Robetta server. The modeled AFLR-Protein was further optimization and validation using Rampage. In the simulations, we monitored the backbone atoms and the C-α-helix of the modeled protein. The low RMSD and the simulation time indicate that, as expected, the 3D structural model of AFLR-protein represents a stable folding conformation. This study paves the way for generating computer molecular models for proteins whose crystal structures are not available and which would aid in detailed molecular mechanism of inhibition of aflatoxin.

  10. Three-dimensional hydrological and thermal property models of Yucca Mountain, Nevada

    Energy Technology Data Exchange (ETDEWEB)

    Rautman, C.A.; McKenna, S.A. [Sandia National Labs., Albuquerque, NM (United States). Geohydrology Dept.

    1997-11-01

    This report describes the creation of three-dimensional numerical models of selected rock-matrix properties for the region of the potential high-level nuclear waste repository site at Yucca Mountain, which is located in southern Nevada. The models have been generated for a majority of the unsaturated and shallow saturated zone within an area referred to within the Yucca Mountain Site Characterization project as the site area. They comprise a number of material properties of importance both to detailed process-level modeling activities and to more summary-style performance assessment modeling. The material properties within these models are both spatially variable (heterogeneous) and spatially correlated, as the rocks are understood from data obtained from site-characterization drill holes widely scattered across the site area.

  11. Three-Dimensional Flow Separation Induced by a Model Vocal Fold Polyp

    Science.gov (United States)

    Stewart, Kelley C.; Erath, Byron D.; Plesniak, Michael W.

    2012-11-01

    The fluid-structure energy exchange process for normal speech has been studied extensively, but it is not well understood for pathological conditions. Polyps and nodules, which are geometric abnormalities that form on the medial surface of the vocal folds, can disrupt vocal fold dynamics and thus can have devastating consequences on a patient's ability to communicate. A recent in-vitro investigation of a model polyp in a driven vocal fold apparatus demonstrated that such a geometric abnormality considerably disrupts the glottal jet behavior and that this flow field adjustment was a likely reason for the severe degradation of the vocal quality in patients. Understanding of the formation and propagation of vortical structures from a geometric protuberance, and their subsequent impact on the aerodynamic loadings that drive vocal fold dynamic, is a critical component in advancing the treatment of this pathological condition. The present investigation concerns the three-dimensional flow separation induced by a wall-mounted prolate hemispheroid with a 2:1 aspect ratio in cross flow, i.e. a model vocal fold polyp. Unsteady three-dimensional flow separation and its impact of the wall pressure loading are examined using skin friction line visualization and wall pressure measurements. Supported by the National Science Foundation, Grant No. CBET-1236351 and GW Center for Biomimetics and Bioinspired Engineering (COBRE).

  12. Three-Dimensional Numerical Modeling of Macrosegregation in Continuously Cast Billets

    Directory of Open Access Journals (Sweden)

    Qipeng Dong

    2017-06-01

    Full Text Available Macrosegregation, serving as a major defect in billets, can severely degrade material homogeneity. Better understanding of the physical characteristics of macrosegregation through numerical simulation could significantly contribute to the segregation control. The main purpose of this study was to predict macrosegregation in continuously cast billets with a newly developed three-dimensional macrosegregation model. The fluid flow, solidification, and solute transport in the entire billet region were solved and analyzed. Flow patterns, revealing a typical melt recirculation at the upper region of mold and thermosolutal convection at the secondary cooling zone, significantly affect the solidification and solute distribution. The solute redistribution occurring with thermosolutal convection at the solidification front contributes significantly to continued macrosegregation as solidification proceeds. The results of this study show that the equilibrium partition coefficient is mostly responsible for the magnitude of macrosegregation, while comparison between solute P and S indicated that diffusion coefficients also have some amount of influence. Typical macrosegregation patterns containing a positively segregated peak at the centerline and negatively segregated minima at either side were obtained via the proposed three-dimensional macrosegregation model, which validated by the measured surface temperatures and segregation degree.

  13. Three-dimensional linear fracture mechanics analysis by a displacement-hybrid finite-element model

    International Nuclear Information System (INIS)

    Atluri, S.N.; Kathiresan, K.; Kobayashi, A.S.

    1975-01-01

    This paper deals with a finite-element procedures for the calculation of modes I, II and III stress intensity factors, which vary, along an arbitrarily curved three-dimensional crack front in a structural component. The finite-element model is based on a modified variational principle of potential energy with relaxed continuity requirements for displacements at the inter-element boundary. The variational principle is a three-field principle, with the arbitrary interior displacements for the element, interelement boundary displacements, and element boundary tractions as variables. The unknowns in the final algebraic system of equations, in the present displacement hybrid finite element model, are the nodal displacements and the three elastic stress intensity factors. Special elements, which contain proper square root and inverse square root crack front variations in displacements and stresses, respectively, are used in a fixed region near the crack front. Interelement displacement compatibility is satisfied by assuming an independent interelement boundary displacement field, and using a Lagrange multiplier technique to enforce such interelement compatibility. These Lagrangean multipliers, which are physically the boundary tractions, are assumed from an equilibrated stress field derived from three-dimensional Beltrami (or Maxwell-Morera) stress functions that are complete. However, considerable care should be exercised in the use of these stress functions such that the stresses produced by any of these stress function components are not linearly dependent

  14. Comparing efficient data structures to represent geometric models for three-dimensional virtual medical training.

    Science.gov (United States)

    Bíscaro, Helton H; Nunes, Fátima L S; Dos Santos Oliveira, Jéssica; Pereira, Gustavo R

    2016-10-01

    Data structures have been explored for several domains of computer applications in order to ensure efficiency in the data store and retrieval. However, data structures can present different behavior depending on applications that they are being used. Three-dimensional interactive environments offered by techniques of Virtual Reality require operations of loading and manipulating objects in real time, where realism and response time are two important requirements. Efficient representation of geometrical models plays an important part so that the simulation may become real. In this paper, we present the implementation and the comparison of two topologically efficient data structures - Compact Half-Edge and Mate-Face - for the representation of objects for three-dimensional interactive environments. The structures have been tested at different conditions of processors and RAM memories. The results show that both these structures can be used in an efficient manner. Mate-Face structure has shown itself to be more efficient for the manipulation of neighborhood relationships and the Compact Half-Edge was more efficient for loading of the geometric models. We also evaluated the data structures embedded in applications of biopsy simulation using virtual reality, considering a deformation simulation method applied in virtual human organs. The results showed that their use allows the building of applications considering objects with high resolutions (number of vertices), without significant impact in the time spent in the simulation. Therefore, their use contributes for the construction of more realistic simulators. Copyright © 2016 Elsevier Inc. All rights reserved.

  15. An three-dimensional imaging algorithm based on the radiation model of electric dipole

    International Nuclear Information System (INIS)

    Tian Bo; Zhong Weijun; Tong Chuangming

    2011-01-01

    A three-dimensional imaging algorithm based on the radiation model of dipole (DBP) is presented. On the foundation of researching the principle of the back projection (BP) algorithm, the relationship between the near field imaging model and far field imaging model is analyzed based on the scattering model. Firstly, the far field sampling data is transferred to the near field sampling data through applying the radiation theory of dipole. Then the dealt sampling data was projected to the imaging region to obtain the images of targets. The capability of the new algorithm to detect targets is verified by using finite-difference time-domain method (FDTD), and the coupling effect for imaging is analyzed. (authors)

  16. Three-dimensional models of conventional and vertical junction laser-photovoltaic energy converters

    Science.gov (United States)

    Heinbockel, John H.; Walker, Gilbert H.

    1988-01-01

    Three-dimensional models of both conventional planar junction and vertical junction photovoltaic energy converters have been constructed. The models are a set of linear partial differential equations and take into account many photoconverter design parameters. The model is applied to Si photoconverters; however, the model may be used with other semiconductors. When used with a Nd laser, the conversion efficiency of the Si vertical junction photoconverter is 47 percent, whereas the efficiency for the conventional planar Si photoconverter is only 17 percent. A parametric study of the Si vertical junction photoconverter is then done in order to describe the optimum converter for use with the 1.06-micron Nd laser. The efficiency of this optimized vertical junction converter is 44 percent at 1 kW/sq cm.

  17. Analytical model for three-dimensional Mercedes-Benz water molecules

    Science.gov (United States)

    Urbic, T.

    2013-01-01

    We developed a statistical model which describes the thermal and volumetric properties of water-like molecules. A molecule is presented as a three-dimensional sphere with four hydrogen-bonding arms. Each water molecule interacts with its neighboring waters through a van der Waals interaction and an orientation-dependent hydrogen-bonding interaction. This model, which is largely analytical, is a variant of a model developed before for a two-dimensional Mercedes-Benz model of water. We explored properties such as molar volume, density, heat capacity, thermal expansion coefficient, and isothermal compressibility as a function of temperature and pressure. We found that the volumetric and thermal properties follow the same trends with temperature as in real water and are in good general agreement with Monte Carlo simulations, including the density anomaly, the minimum in the isothermal compressibility, and the decreased number of hydrogen bonds upon increasing the temperature. PMID:23005100

  18. Three-dimensional ray-tracing model for the study of advanced refractive errors in keratoconus.

    Science.gov (United States)

    Schedin, Staffan; Hallberg, Per; Behndig, Anders

    2016-01-20

    We propose a numerical three-dimensional (3D) ray-tracing model for the analysis of advanced corneal refractive errors. The 3D modeling was based on measured corneal elevation data by means of Scheimpflug photography. A mathematical description of the measured corneal surfaces from a keratoconus (KC) patient was used for the 3D ray tracing, based on Snell's law of refraction. A model of a commercial intraocular lens (IOL) was included in the analysis. By modifying the posterior IOL surface, it was shown that the imaging quality could be significantly improved. The RMS values were reduced by approximately 50% close to the retina, both for on- and off-axis geometries. The 3D ray-tracing model can constitute a basis for simulation of customized IOLs that are able to correct the advanced, irregular refractive errors in KC.

  19. Analytical model for three-dimensional Mercedes-Benz water molecules.

    Science.gov (United States)

    Urbic, T

    2012-06-01

    We developed a statistical model which describes the thermal and volumetric properties of water-like molecules. A molecule is presented as a three-dimensional sphere with four hydrogen-bonding arms. Each water molecule interacts with its neighboring waters through a van der Waals interaction and an orientation-dependent hydrogen-bonding interaction. This model, which is largely analytical, is a variant of a model developed before for a two-dimensional Mercedes-Benz model of water. We explored properties such as molar volume, density, heat capacity, thermal expansion coefficient, and isothermal compressibility as a function of temperature and pressure. We found that the volumetric and thermal properties follow the same trends with temperature as in real water and are in good general agreement with Monte Carlo simulations, including the density anomaly, the minimum in the isothermal compressibility, and the decreased number of hydrogen bonds upon increasing the temperature.

  20. An analysis of three dimensional diffusion in a representative arterial wall mass transport model.

    Science.gov (United States)

    Denny, William J; O'Connell, Barry M; Milroy, John; Walsh, Michael T

    2013-05-01

    The development and use of drug eluting stents has brought about significant improvements in reducing in-stent restenosis, however, their long term presence in the artery is still under examination due to restenosis reoccurring. Current studies focus mainly on stent design, coatings and deployment techniques but few studies address the issue of the physics of three dimensional mass transport in the artery wall. There is a dearth of adequate validated numerical mass transport models that simulate the physics of diffusion dominated drug transport in the artery wall whilst under compression. A novel experimental setup used in a previous study was adapted and an expansion of that research was carried out to validate the physics of three dimensional diffusive mass transport into a compressed porous media. This study developed a more sensitive method for measuring the concentration of the species of interest. It revalidated mass transport in the radial direction and presented results which highlight the need for an evaluation of the governing equation for transient diffusive mass transport in a porous media, in its current form, to be carried out.

  1. Mechanism of drag reduction on a three-dimensional model vehicle using a passive control device

    Science.gov (United States)

    Yi, Wook; Sagong, Woong; Choi, Haecheon

    2007-11-01

    It has been well known that the boat-tail device reduces drag on a three-dimensional vehicle. However, its detailed mechanism is not clearly known yet. To understand this mechanism, we conduct an experiment for flow over a three-dimensional model vehicle in ground proximity. We consider various lengths (l/H = 0.1 ˜0.5) and slant angles (θ=0^o ˜40^o) of the boat tail, and conduct velocity measurements near the boat tail and oil visualizations on the boat-tail surface. We find that the slant angle is an important parameter for drag reduction. The maximum drag reduction occurs at θ=12.5^o, 15^o and 15^o for l/H = 0.1, 0.3 and 0.5, respectively, and the amounts of maximum drag reduction are 20, 41 and 45%. For the case of l/H = 0.3, separation starts to occur from θ= 6^o at the leading edge of the boat tail. This separated flow reattaches on the boat-tail surface and forms a small secondary separation bubble, which provides strong near-wall momentum and delays main separation down to the trailing edge of boat tail. The size of secondary separation bubble increases with increasing θ. At θ>16^o, main separation occurs at the leading edge of boat tail, and drag increases from the minimum value and reaches that of no control at large θ's.

  2. Insulin as a model to teach three-dimensional structure of proteins

    Directory of Open Access Journals (Sweden)

    João Batista Teixeira da Rocha

    2018-02-01

    Proteins are the most ubiquitous macromolecules found in the living cells and have innumerous physiological functions. Therefore, it is fundamental to build a solid knowledge about the proteins three dimensional structure to better understand the living state. The hierarchical structure of proteins is usually studied in the undergraduate discipline of Biochemistry. Here we described pedagogical interventions designed to increase the preservice teacher chemistry students’ knowledge about protein structure. The activities were made using alternative and cheap materials to encourage the application of these simple methodologies by the future teachers in the secondary school. From the primary structure of insulin chains, students had to construct a three-dimensional structure of insulin. After the activities, the students highlighted an improvement of their previous knowledge about proteins structure. The construction of a tridimensional model together with other activities seems to be an efficient way to promote the learning about the structure of proteins to undergraduate students. The methodology used was inexpensiveness and simple and it can be used both in the university and in the high-school.

  3. Three-fluid, three-dimensional magnetohydrodynamic solar wind model with eddy viscosity and turbulent resistivity

    Energy Technology Data Exchange (ETDEWEB)

    Usmanov, Arcadi V.; Matthaeus, William H. [Department of Physics and Astronomy, University of Delaware, Newark, DE 19716 (United States); Goldstein, Melvyn L., E-mail: arcadi.usmanov@nasa.gov [Code 672, NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States)

    2014-06-10

    We have developed a three-fluid, three-dimensional magnetohydrodynamic solar wind model that incorporates turbulence transport, eddy viscosity, turbulent resistivity, and turbulent heating. The solar wind plasma is described as a system of co-moving solar wind protons, electrons, and interstellar pickup protons, with separate energy equations for each species. Numerical steady-state solutions of Reynolds-averaged solar wind equations coupled with turbulence transport equations for turbulence energy, cross helicity, and correlation length are obtained by the time relaxation method in the corotating with the Sun frame of reference in the region from 0.3 to 100 AU (but still inside the termination shock). The model equations include the effects of electron heat conduction, Coulomb collisions, photoionization of interstellar hydrogen atoms and their charge exchange with the solar wind protons, turbulence energy generation by pickup protons, and turbulent heating of solar wind protons and electrons. The turbulence transport model is based on the Reynolds decomposition and turbulence phenomenologies that describe the conversion of fluctuation energy into heat due to a turbulent cascade. In addition to using separate energy equations for the solar wind protons and electrons, a significant improvement over our previous work is that the turbulence model now uses an eddy viscosity approximation for the Reynolds stress tensor and the mean turbulent electric field. The approximation allows the turbulence model to account for driving of turbulence by large-scale velocity gradients. Using either a dipole approximation for the solar magnetic field or synoptic solar magnetograms from the Wilcox Solar Observatory for assigning boundary conditions at the coronal base, we apply the model to study the global structure of the solar wind and its three-dimensional properties, including embedded turbulence, heating, and acceleration throughout the heliosphere. The model results are

  4. Conversion of the Bryan Mound geological site characterization reports to a three-dimensional model.

    Energy Technology Data Exchange (ETDEWEB)

    Stein, Joshua S.; Rautman, Christopher Arthur

    2005-04-01

    The Bryan Mound salt dome, located near Freeport, Texas, is home to one of four underground crude oil-storage facilities managed by the U. S. Department of Energy Strategic Petroleum Reserve (SPR) Program. Sandia National Laboratories, as the geotechnical advisor to the SPR, conducts site-characterization investigations and other longer-term geotechnical and engineering studies in support of the program. This report describes the conversion of two-dimensional geologic interpretations of the Bryan Mound site into three-dimensional geologic models. The new models include the geometry of the salt dome, the surrounding sedimentary units, mapped faults, and the 20 oil-storage caverns at the site. This work provides an internally consistent geologic model of the Bryan Mound site that can be used in support of future work.

  5. An eddy-current model for three-dimensional nondestructive evaluation of advanced composites

    Science.gov (United States)

    Sabbagh, Harold A.; Murphy, R. Kim; Sabbagh, Elias H.

    2015-03-01

    We have developed a rigorous electromagnetic model and an inversion algorithm for the three-dimensional NDE of advanced composite materials. This approach extends Victor Technologies' work in eddy-current NDE of conventional metals, and allows one to determine in localized regions the fiber-resin ratio in graphite-epoxy, and to determine those anomalies, e.g., delaminations, broken fibers, moisture content, etc., that can be reconstructed by our inversion method. In developing the model, we apply rigorous electromagnetic theory to determine a Green's function for a slab of anisotropic composite material, and then determine the integral relations for the forward and inverse problems using the Green's function. We will give examples of the solution of forward problems using this model.

  6. Quasi-Three-Dimensional Mathematical Modeling of Morphological Processes Based on Equilibrium Sediment Transport

    Science.gov (United States)

    Charafi, My. M.; Sadok, A.; Kamal, A.; Menai, A.

    A quasi-three-dimensional mathematical model has been developed to study the morphological processes based on equilibrium sediment transport method. The flow velocities are computed by a two-dimensional horizontal depth-averaged flow model (H2D) in combination with logarithmic velocity profiles. The transport of sediment particles by a flow water has been considered in the form of bed load and suspended load. The bed load transport rate is defined as the transport of particles by rolling and saltating along the bed surface and is given by the Van Rijn relationship (1987). The equilibrium suspended load transport is described in terms of an equilibrium sediment concentration profile (ce) and a logarithmic velocity (u). Based on the equilibrium transport, the bed change rate is given by integration of the sediment mass-balance equation. The model results have been compared with a Van Rijn results (equilibrium approach) and good agreement has been found.

  7. Numerical simulation of hydraulic fracturing using a three-dimensional fracture model coupled with an adaptive mesh fluid model

    NARCIS (Netherlands)

    Xiang, G.L.; Vire, A.; Pavlidis, D.; Pain, C.

    2015-01-01

    A three-dimensional fracture model developed in the context of the combined finite-discrete element method is incorporated into a two-way fluid-solid coupling model. The fracture model is capable of simulating the whole fracturing process. It includes pre-peak hardening deformation, post-peak strain

  8. Fibroblasts and monocyte macrophages contract and degrade three-dimensional collagen gels in extended co-culture

    Directory of Open Access Journals (Sweden)

    Ertl Ronald F

    2001-09-01

    Full Text Available Abstract Background Inflammatory cells are believed to play a prominent role during tissue repair and remodeling. Since repair processes develop and mature over extended time frames, the present study was designed to evaluate the effect of monocytes and fibroblasts in prolonged culture in three-dimensional collagen gels. Methods Blood monocytes from healthy donors and human fetal lung fibroblasts were cast into type I collagen gels and maintained in floating cultures for three weeks. Results Fibroblast-mediated gel contraction was initially inhibited by the presence of monocytes (P P P 2 production was significantly increased by co-culture and its presence attenuated collagen degradation. Conclusion The current study, therefore, demonstrates that interaction between monocytes and fibroblasts can contract and degrade extracellular matrix in extended culture.

  9. A Web-based Visualization System for Three Dimensional Geological Model using Open GIS

    Science.gov (United States)

    Nemoto, T.; Masumoto, S.; Nonogaki, S.

    2017-12-01

    A three dimensional geological model is an important information in various fields such as environmental assessment, urban planning, resource development, waste management and disaster mitigation. In this study, we have developed a web-based visualization system for 3D geological model using free and open source software. The system has been successfully implemented by integrating web mapping engine MapServer and geographic information system GRASS. MapServer plays a role of mapping horizontal cross sections of 3D geological model and a topographic map. GRASS provides the core components for management, analysis and image processing of the geological model. Online access to GRASS functions has been enabled using PyWPS that is an implementation of WPS (Web Processing Service) Open Geospatial Consortium (OGC) standard. The system has two main functions. Two dimensional visualization function allows users to generate horizontal and vertical cross sections of 3D geological model. These images are delivered via WMS (Web Map Service) and WPS OGC standards. Horizontal cross sections are overlaid on the topographic map. A vertical cross section is generated by clicking a start point and an end point on the map. Three dimensional visualization function allows users to visualize geological boundary surfaces and a panel diagram. The user can visualize them from various angles by mouse operation. WebGL is utilized for 3D visualization. WebGL is a web technology that brings hardware-accelerated 3D graphics to the browser without installing additional software. The geological boundary surfaces can be downloaded to incorporate the geologic structure in a design on CAD and model for various simulations. This study was supported by JSPS KAKENHI Grant Number JP16K00158.

  10. Three-dimensional geologic model of the southeastern Espanola Basin, Santa Fe County, New Mexico

    Science.gov (United States)

    Pantea, Michael P.; Hudson, Mark R.; Grauch, V.J.S.; Minor, Scott A.

    2011-01-01

    This multimedia model and report show and describe digital three-dimensional faulted surfaces and volumes of lithologic units that confine and constrain the basin-fill aquifers within the Espanola Basin of north-central New Mexico. These aquifers are the primary groundwater resource for the cities of Santa Fe and Espanola, six Pueblo nations, and the surrounding areas. The model presented in this report is a synthesis of geologic information that includes (1) aeromagnetic and gravity data and seismic cross sections; (2) lithologic descriptions, interpretations, and geophysical logs from selected drill holes; (3) geologic maps, geologic cross sections, and interpretations; and (4) mapped faults and interpreted faults from geophysical data. Modeled faults individually or collectively affect the continuity of the rocks that contain the basin aquifers; they also help define the form of this rift basin. Structure, trend, and dip data not previously published were added; these structures are derived from interpretations of geophysical information and recent field observations. Where possible, data were compared and validated and reflect the complex relations of structures in this part of the Rio Grande rift. This interactive geologic framework model can be used as a tool to visually explore and study geologic structures within the Espanola Basin, to show the connectivity of geologic units of high and low permeability between and across faults, and to show approximate dips of the lithologic units. The viewing software can be used to display other data and information, such as drill-hole data, within this geologic framework model in three-dimensional space.

  11. Geostatistical three-dimensional modeling of oolite shoals, St. Louis Limestone, southwest Kansas

    Science.gov (United States)

    Qi, L.; Carr, T.R.; Goldstein, R.H.

    2007-01-01

    In the Hugoton embayment of southwestern Kansas, reservoirs composed of relatively thin (oil. The geometry and distribution of oolitic deposits control the heterogeneity of the reservoirs, resulting in exploration challenges and relatively low recovery. Geostatistical three-dimensional (3-D) models were constructed to quantify the geometry and spatial distribution of oolitic reservoirs, and the continuity of flow units within Big Bow and Sand Arroyo Creek fields. Lithofacies in uncored wells were predicted from digital logs using a neural network. The tilting effect from the Laramide orogeny was removed to construct restored structural surfaces at the time of deposition. Well data and structural maps were integrated to build 3-D models of oolitic reservoirs using stochastic simulations with geometry data. Three-dimensional models provide insights into the distribution, the external and internal geometry of oolitic deposits, and the sedimentologic processes that generated reservoir intervals. The structural highs and general structural trend had a significant impact on the distribution and orientation of the oolitic complexes. The depositional pattern and connectivity analysis suggest an overall aggradation of shallow-marine deposits during pulses of relative sea level rise followed by deepening near the top of the St. Louis Limestone. Cemented oolitic deposits were modeled as barriers and baffles and tend to concentrate at the edge of oolitic complexes. Spatial distribution of porous oolitic deposits controls the internal geometry of rock properties. Integrated geostatistical modeling methods can be applicable to other complex carbonate or siliciclastic reservoirs in shallow-marine settings. Copyright ?? 2007. The American Association of Petroleum Geologists. All rights reserved.

  12. Detection of the Hematopoietic Stem and Progenitor Cell Marker CD133 during Angiogenesis in Three-Dimensional Collagen Gel Culture

    Directory of Open Access Journals (Sweden)

    Masumi Akita

    2013-01-01

    Full Text Available We detected the hematopoietic stem and progenitor cell marker CD133 using immunogold labeling during angiogenesis in a three-dimensional collagen gel culture. CD133-positive cells were present in capillary tubes newly formed from aortic explants in vitro. The CD133-positive cell population had the capacity to form capillary tubes. Lovastatin strongly inhibited cell migration from aortic explants and caused the degradation of the capillary tubes. The present study provides insight into the function of CD133 during angiogenesis as well as an explanation for the antiangiogenic effect of statins.

  13. A three-dimensional cellular automaton model for dendritic growth in multi-component alloys

    International Nuclear Information System (INIS)

    Zhang Xianfei; Zhao, Jiuzhou; Jiang, Hongxiang; Zhu, Mingfang

    2012-01-01

    A three-dimensional (3-D) cellular automaton model for dendritic growth in multi-component alloys is developed. The velocity of advance of the solid/liquid (S/L) interface is calculated using the solute conservation relationship at the S/L interface. The effect of interactions between the alloying elements on the diffusion coefficient of solutes in the solid and liquid phases are considered. The model is first validated by comparing with the theoretical predictions for binary and ternary alloys, and then applied to simulate the solidification process of Al–Cu–Mg alloys by a coupling of thermodynamic and kinetic calculations. The numerical results obtained show both the free dendrite growth process as well as the directional solidification process. The calculated secondary dendrite arm spacing in the directionally solidified Al–Cu–Mg alloy is in good agreement with the experimental results. The effect of interactions between the various alloying elements on dendritic growth is discussed.

  14. Advances in electromagnetic models for three-dimensional nondestructive evaluation of advanced composites

    Science.gov (United States)

    Sabbagh, Harold A.; Murphy, R. Kim; Sabbagh, Elias H.

    2016-02-01

    In past work we have developed a rigorous electromagnetic model and an inversion algorithm for the three-dimensional NDE of advanced composite materials. This approach extends Victor Technologies' work in eddy-current NDE of conventional metals, and allows one to determine in localized regions the fiber-resin ratio in graphite-epoxy, and to determine those anomalies, e.g., delaminations, broken fibers, moisture content, etc., that can be reconstructed by our inversion method. In developing the model, we applied rigorous electromagnetic theory to determine a Green's function for a slab of anisotropic composite material, and then determine the integral relations for the forward and inverse problems using the Green's function. In addition, we have given examples of the solution of forward and inverse problems using these algorithms.

  15. Coarse-graining intermittent intracellular transport: Two- and three-dimensional models

    Science.gov (United States)

    Lawley, Sean D.; Tuft, Marie; Brooks, Heather A.

    2015-10-01

    Viruses and other cellular cargo that lack locomotion must rely on diffusion and cellular transport systems to navigate through a biological cell. Indeed, advances in single particle tracking have revealed that viral motion alternates between (a) diffusion in the cytoplasm and (b) active transport along microtubules. This intermittency makes quantitative analysis of trajectories difficult. Therefore, the purpose of this paper is to construct mathematical methods to approximate intermittent dynamics by effective stochastic differential equations. The coarse-graining method that we develop is more accurate than existing techniques and applicable to a wide range of intermittent transport models. In particular, we apply our method to two- and three-dimensional cell geometries (disk, sphere, and cylinder) and demonstrate its accuracy. In addition to these specific applications, we also explain our method in full generality for use on future intermittent models.

  16. A new method for three-dimensional laparoscopic ultrasound model reconstruction

    DEFF Research Database (Denmark)

    Fristrup, C W; Pless, T; Durup, J

    2004-01-01

    was to perform a volumetric test and a clinical feasibility test of a new 3D method using standard laparoscopic ultrasound equipment. METHODS: Three-dimensional models were reconstructed from a series of two-dimensional ultrasound images using either electromagnetic tracking or a new 3D method. The volumetric...... accuracy of the new method was tested ex vivo, and the clinical feasibility was tested on a small series of patients. RESULTS: Both electromagnetic tracked reconstructions and the new 3D method gave good volumetric information with no significant difference. Clinical use of the new 3D method showed...... accurate models comparable to findings at surgery and pathology. CONCLUSIONS: The use of the new 3D method is technically feasible, and its volumetrically, accurate compared to 3D with electromagnetic tracking....

  17. Gauge structure, anomalies and mass generation in a three dimensional thirring model

    International Nuclear Information System (INIS)

    Gomes, M.; Mendes, R.S.; Ribeiro, R.F.; Silva, A.J. da.

    1990-05-01

    We consider a three dimensional model of spinor fields with a Thirring like, quadrilinear self interaction. Using either two or four component Dirac spinors, we prove that the 1/N expansion for the model is renormalizable if a gauge structure to select physical quantities is introduced. For certain values of the coupling the leading 1/N approximation exihibits bound state poles. Dynamical breaking of parity or chiral symmetry is shown to occur as a cooperative effect of different orders of 1/N, if N is smaller than the critical value N c = 128 / x 2 D' , where D is two or four depending on wether the fermion field has two or four components. (author) [pt

  18. Chiral spin liquids at finite temperature in a three-dimensional Kitaev model

    Science.gov (United States)

    Kato, Yasuyuki; Kamiya, Yoshitomo; Nasu, Joji; Motome, Yukitoshi

    2017-11-01

    Chiral spin liquids (CSLs) in three dimensions and thermal phase transitions to paramagnet are studied by unbiased Monte Carlo simulations. For an extension of the Kitaev model to a three-dimensional tricoordinate network dubbed the hypernonagon lattice, we derive low-energy effective models in two different anisotropic limits. We show that the effective interactions between the emergent Z2 degrees of freedom called fluxes are unfrustrated in one limit, while highly frustrated in the other. In both cases, we find a first-order phase transition to the CSL, where both time-reversal and parity symmetries are spontaneously broken. In the frustrated case, however, the CSL state is highly exotic—the flux configuration is subextensively degenerate while showing a directional order with broken C3 rotational symmetry. Our results provide two contrasting archetypes of CSLs in three dimensions, both of which allow approximation-free simulation for investigating the thermodynamics.

  19. Simulations of Heat Transport Phenomena in a Three-Dimensional Model of Knitted Fabric

    Directory of Open Access Journals (Sweden)

    Puszkarz A.K.

    2016-09-01

    Full Text Available The main goal of the current work is to analyse the three-dimensional approach for modelling knitted fabric structures for future analysis of physical properties and thermal phenomena. The introduced model assumes some simplification of morphology. First, fibres in knitted fabrics are described as monofilaments characterized by isotropic thermal properties. The current form of the considered knitted fabric is determined by morphological properties of the used monofilament and simplification of the stitch shape. This simplification was based on a particular technology for the knitting process that introduces both geometric parameters and physical material properties. Detailed descriptions of heat transfer phenomena can also be considered. A sensitivity analysis of the temperature field with respect to selected structural parameters was also performed.

  20. The simulation of the transport of aircraft emissions by a three-dimensional global model

    Directory of Open Access Journals (Sweden)

    G. J. M. Velders

    1994-04-01

    Full Text Available A three-dimensional off-line tracer transport model coupled to the ECMWF analyses has been used to study the transport of trace gases in the atmosphere. The model gives a reasonable description of their general transport in the atmosphere. The simulation of the transport of aircraft emissions (as NOx has been studied as well as the transport of passive tracers injected at different altitudes in the North Atlantic flight corridor. A large zonal variation in the NOx concentrations as well as large seasonal and yearly variations was found. The altitude of the flight corridor influences the amount of tracers transported into the troposphere and stratosphere to a great extent.

  1. Pushing the limits of Monte Carlo simulations for the three-dimensional Ising model

    Science.gov (United States)

    Ferrenberg, Alan M.; Xu, Jiahao; Landau, David P.

    2018-04-01

    While the three-dimensional Ising model has defied analytic solution, various numerical methods like Monte Carlo, Monte Carlo renormalization group, and series expansion have provided precise information about the phase transition. Using Monte Carlo simulation that employs the Wolff cluster flipping algorithm with both 32-bit and 53-bit random number generators and data analysis with histogram reweighting and quadruple precision arithmetic, we have investigated the critical behavior of the simple cubic Ising Model, with lattice sizes ranging from 163 to 10243. By analyzing data with cross correlations between various thermodynamic quantities obtained from the same data pool, e.g., logarithmic derivatives of magnetization and derivatives of magnetization cumulants, we have obtained the critical inverse temperature Kc=0.221 654 626 (5 ) and the critical exponent of the correlation length ν =0.629 912 (86 ) with precision that exceeds all previous Monte Carlo estimates.

  2. An HCG-rich microenvironment contributes to ovarian cancer cell differentiation into endothelioid cells in a three-dimensional culture system.

    Science.gov (United States)

    Su, Min; Fan, Chao; Gao, Sainan; Shen, Aiguo; Wang, Xiaoying; Zhang, Yuquan

    2015-11-01

    We investigated the expression of human chorionic gonadotropin (HCG) and its effects on vasculogenic mimicry (VM) formation in ovarian cancer cells under normoxic and hypoxic conditions in three-dimensional matrices preconditioned by an endothelial-trophoblast cell co-culture system. The co-culture model was established using human umbilical vein endothelial cells (HUVECs) and HTR-8 trophoblast cells in a three-dimensional culture system. The co-cultured cells were removed with NH4OH, and ovarian cancer cells were implanted into the preconditioned matrix. VM was identified morphologically and by detecting vascular markers expressed by cancer cells. The specificity of the effects of exogenous HCG in the microenvironment was assessed by inhibition with a neutralizing anti-HCG antibody. HCG siRNA was used to knock down endogenous HCG expression in OVCAR-3 ovarian cancer cells. HTR-8 cells 'fingerprinted' HUVECs to form capillary-like tube structures in co-cultures. In the preconditioned HCG-rich microenvironment, the number of vessel-like network structures formed by HCG receptor-positive OVCAR-3 cells and the expression levels of CD31, VEGF and factor VIII were significantly increased. The preconditioned HCG-rich microenvironment significantly increased the expression of hypoxia inducible factor-1α (HIF‑1α) and VM formation in OVCAR-3 cells under hypoxic conditions. Treatment with a neutralizing anti-HCG antibody but not HCG siRNA significantly inhibited the formation of vessel-like network structures. HCG in the microenvironment contributes to OVCAR-3 differentiation into endothelioid cells in three-dimensional matrices preconditioned with an endothelial-trophoblast cell co-culture system. HCG may synergistically enhance hypoxia-induced vascular markers and HIF-1α expression. These findings would provide perspectives on new therapeutic targets for ovarian cancer.

  3. Petroleum migration pathways and charge concentration: A three-dimensional model

    Energy Technology Data Exchange (ETDEWEB)

    Hindle, A.D. [Anadarko Algeria Corp., Middlesex (United Kingdom)

    1997-09-01

    Petroleum migration pathways through a basin are determined by the three-dimensional distribution of discontinuous sealing surfaces, which are usually parallel to bedding. The petroleum migrates below the sealing surface, taking the structurally most advantageous route. The three-dimensional distribution of migration pathways within the petroleum system can be modeled on a personal computer using a program based on the parameters discussed in this paper. Application of the model to the Paris and Williston basins demonstrates that a good correlation between predicted pathways and discovered accumulations can be made using simple models. Pathways form a dense network overlying generating areas in the central parts of basins. Toward the basin margins these routes commonly become increasingly focused into discrete pathways by the sealing-surface morphologies. Eventually, these pathways may reach the surface as seepages. It is important to integrate surface outcrops of migration routes (surface seepages) into migration modeling. Deflection of the pathways from the structurally most advantageous route below the sealing surface may be caused by lateral sealing barriers due to faces variation in the carrier rock below the seal, fault juxtaposition, or cross-formational seals such as salt intrusions. Deflection of pathways also occurs where there are hydrodynamic conditions in response to topography-driven groundwater flow. Zones of vertical migration are associated with facies changes along the horizon of the sealing surface into a nonsealing facies, or juxtaposition to nonsealing strata by faults. Vertical migration from either normally or abnormally pressured strata is most likely to occur into normally or lesser pressured strata at intrabasinal highs where hydrocarbons can be stored and transferred at times of temporary seal rupture.

  4. Slab1.0: A three-dimensional model of global subduction zone geometries

    Science.gov (United States)

    Hayes, Gavin P.; Wald, David J.; Johnson, Rebecca L.

    2012-01-01

    We describe and present a new model of global subduction zone geometries, called Slab1.0. An extension of previous efforts to constrain the two-dimensional non-planar geometry of subduction zones around the focus of large earthquakes, Slab1.0 describes the detailed, non-planar, three-dimensional geometry of approximately 85% of subduction zones worldwide. While the model focuses on the detailed form of each slab from their trenches through the seismogenic zone, where it combines data sets from active source and passive seismology, it also continues to the limits of their seismic extent in the upper-mid mantle, providing a uniform approach to the definition of the entire seismically active slab geometry. Examples are shown for two well-constrained global locations; models for many other regions are available and can be freely downloaded in several formats from our new Slab1.0 website, http://on.doi.gov/d9ARbS. We describe improvements in our two-dimensional geometry constraint inversion, including the use of ‘average’ active source seismic data profiles in the shallow trench regions where data are otherwise lacking, derived from the interpolation between other active source seismic data along-strike in the same subduction zone. We include several analyses of the uncertainty and robustness of our three-dimensional interpolation methods. In addition, we use the filtered, subduction-related earthquake data sets compiled to build Slab1.0 in a reassessment of previous analyses of the deep limit of the thrust interface seismogenic zone for all subduction zones included in our global model thus far, concluding that the width of these seismogenic zones is on average 30% larger than previous studies have suggested.

  5. Estimation of muscle response using three-dimensional musculoskeletal models before impact situation: a simulation study.

    Science.gov (United States)

    Bae, Tae Soo; Loan, Peter; Choi, Kuiwon; Hong, Daehie; Mun, Mu Seong

    2010-12-01

    When car crash experiments are performed using cadavers or dummies, the active muscles' reaction on crash situations cannot be observed. The aim of this study is to estimate muscles' response of the major muscle groups using three-dimensional musculoskeletal model by dynamic simulations of low-speed sled-impact. The three-dimensional musculoskeletal models of eight subjects were developed, including 241 degrees of freedom and 86 muscles. The muscle parameters considering limb lengths and the force-generating properties of the muscles were redefined by optimization to fit for each subject. Kinematic data and external forces measured by motion tracking system and dynamometer were then input as boundary conditions. Through a least-squares optimization algorithm, active muscles' responses were calculated during inverse dynamic analysis tracking the motion of each subject. Electromyography for major muscles at elbow, knee, and ankle joints was measured to validate each model. For low-speed sled-impact crash, experiment and simulation with optimized and unoptimized muscle parameters were performed at 9.4 m/h and 10 m/h and muscle activities were compared among them. The muscle activities with optimized parameters were closer to experimental measurements than the results without optimization. In addition, the extensor muscle activities at knee, ankle, and elbow joint were found considerably at impact time, unlike previous studies using cadaver or dummies. This study demonstrated the need to optimize the muscle parameters to predict impact situation correctly in computational studies using musculoskeletal models. And to improve accuracy of analysis for car crash injury using humanlike dummies, muscle reflex function, major extensor muscles' response at elbow, knee, and ankle joints, should be considered.

  6. Towards Tuning the Mechanical Properties of Three-Dimensional Collagen Scaffolds Using a Coupled Fiber-Matrix Model

    Directory of Open Access Journals (Sweden)

    Shengmao Lin

    2015-08-01

    Full Text Available Scaffold mechanical properties are essential in regulating the microenvironment of three-dimensional cell culture. A coupled fiber-matrix numerical model was developed in this work for predicting the mechanical response of collagen scaffolds subjected to various levels of non-enzymatic glycation and collagen concentrations. The scaffold was simulated by a Voronoi network embedded in a matrix. The computational model was validated using published experimental data. Results indicate that both non-enzymatic glycation-induced matrix stiffening and fiber network density, as regulated by collagen concentration, influence scaffold behavior. The heterogeneous stress patterns of the scaffold were induced by the interfacial mechanics between the collagen fiber network and the matrix. The knowledge obtained in this work could help to fine-tune the mechanical properties of collagen scaffolds for improved tissue regeneration applications.

  7. Design and Validation of a Three-Dimensional Printed Flexible Canine Otoscopy Teaching Model.

    Science.gov (United States)

    Nibblett, Belle Marie D; Pereira, Mary Mauldin; Sithole, Fortune; Orchard, Paul A D; Bauman, Eric B

    2017-04-01

    A teaching model was sought to improve canine otoscopy skill and reduce use of teaching dogs. An otoscopy teaching model was printed in a flexible medium on a desktop three-dimensional printer from a magnetic resonance image of a canine external ear canal. The model was mounted in a polyvinyl dog mannequin. Validation of the teaching model was sought from student, faculty, and dog perspective. Student perception of prelaboratory training was assessed using a survey regarding their experience. Otoscopy skill was assessed by faculty grading the ear anatomy visualized as well as the time required to prepare for and perform otoscopy and the time to the dog's first sign of aversion. The time data were used to assess whether there was a reduction in use of teaching dogs. Data from students exposed to the otoscopy model as part of their prelaboratory training (n = 20) were compared with those that were not exposed to the model (n = 19). The students found prelaboratory training with the model significantly more helpful than prelaboratory training without the model in all aspects of otoscopy (P dog use. The students found the model helpful, but the best that can be said is the model did not negatively impact their otoscopy skill acquisition. Although the outcome of the study did not indicate a reduction in teaching dog use, the model has replaced live dog otoscopy in the institute's teaching program for initial canine otoscopy exposure.

  8. THREE-DIMENSIONAL MODELING TOOLS IN THE PROCESS OF FORMATION OF GRAPHIC COMPETENCE OF THE FUTURE BACHELOR OF COMPUTER SCIENCE

    Directory of Open Access Journals (Sweden)

    Kateryna P. Osadcha

    2017-12-01

    Full Text Available The article is devoted to some aspects of the formation of future bachelor's graphic competence in computer sciences while teaching the fundamentals for working with three-dimensional modelling means. The analysis, classification and systematization of three-dimensional modelling means are given. The aim of research consists in investigating the set of instruments and classification of three-dimensional modelling means and correlation of skills, which are being formed, concerning inquired ones at the labour market in order to use them further in the process of forming graphic competence during training future bachelors in computer sciences. The peculiarities of the process of forming future bachelor's graphic competence in computer sciences by means of revealing, analyzing and systematizing three-dimensional modelling means and types of three-dimensional graphics at present stage of the development of informational technologies are traced a line round. The result of the research is a soft-ware choice in three-dimensional modelling for the process of training future bachelors in computer sciences.

  9. A recapitulative three-dimensional model of breast carcinoma requires perfusion for multi-week growth

    Directory of Open Access Journals (Sweden)

    Kayla F Goliwas

    2016-07-01

    Full Text Available Breast carcinomas are complex, three-dimensional tissues composed of cancer epithelial cells and stromal components, including fibroblasts and extracellular matrix. In vitro models that more faithfully recapitulate this dimensionality and stromal microenvironment should more accurately elucidate the processes driving carcinogenesis, tumor progression, and therapeutic response. Herein, novel in vitro breast carcinoma surrogates, distinguished by a relevant dimensionality and stromal microenvironment, are described and characterized. A perfusion bioreactor system was used to deliver medium to surrogates containing engineered microchannels and the effects of perfusion, medium composition, and the method of cell incorporation and density of initial cell seeding on the growth and morphology of surrogates were assessed. Perfused surrogates demonstrated significantly greater cell density and proliferation and were more histologically recapitulative of human breast carcinoma than surrogates maintained without perfusion. Although other parameters of the surrogate system, such as medium composition and cell seeding density, affected cell growth, perfusion was the most influential parameter.

  10. Three-dimensional modeling of capsule implosions in OMEGA tetrahedral hohlraums

    International Nuclear Information System (INIS)

    Schnittman, J. D.; Craxton, R. S.

    2000-01-01

    Tetrahedral hohlraums have been proposed as a means for achieving the highly uniform implosions needed for ignition with inertial confinement fusion (ICF) [J. D. Schnittman and R. S. Craxton, Phys. Plasmas 3, 3786 (1996)]. Recent experiments on the OMEGA laser system have achieved good drive uniformity consistent with theoretical predictions [J. M. Wallace et al., Phys. Rev. Lett. 82, 3807 (1999)]. To better understand these experiments and future investigations of high-convergence ICF implosions, the three-dimensional (3-D) view-factor code BUTTERCUP has been expanded to model the time-dependent radiation transport in the hohlraum and the hydrodynamic implosion of the capsule. Additionally, a 3-D postprocessor has been written to simulate x-ray images of the imploded core. Despite BUTTERCUP's relative simplicity, its predictions for radiation drive temperatures, fusion yields, and core deformation show close agreement with experiment. (c) 2000 American Institute of Physics

  11. Integrated three-dimensional models for noninvasive monitoring and valorization of the Morgantina silver treasure (Sicily)

    Science.gov (United States)

    Alberghina, Maria Francesca; Alberghina, Filippo; Allegra, Dario; Di Paola, Francesco; Maniscalco, Laura; Milazzo, Giuseppe; Milotta, Filippo L. M.; Pellegrino, Lorella; Schiavone, Salvatore; Stanco, Filippo

    2017-01-01

    The Morgantina silver treasure belonging to the Archaeological Museum of Aidone (Sicily) was involved in a three-dimensional (3-D) survey and diagnostics campaign for monitoring the collection over time in anticipation of their temporary transfer to the Metropolitan Museum of Art in New York for a period of 4 years. Using a multidisciplinary approach, a scientific and methodological protocol based on noninvasive techniques to achieve a complete and integrated knowledge of the precious items and their conservation state, as well as to increase their valorization, has been developed. All acquired data, i.e., 3-D models, ultraviolet fluorescence, x-ray images, and chemical information, will be made available, in an integrated way, within a web-oriented platform, which will present an in-progress tool to deepen existing archaeological knowledge and production technologies and to obtain referenced information of the conservation state before and after moving of the collection from its exposure site.

  12. Partial molar volume of proteins studied by the three-dimensional reference interaction site model theory.

    Science.gov (United States)

    Imai, Takashi; Kovalenko, Andriy; Hirata, Fumio

    2005-04-14

    The three-dimensional reference interaction site model (3D-RISM) theory is applied to the analysis of hydration effects on the partial molar volume of proteins. For the native structure of some proteins, the partial molar volume is decomposed into geometric and hydration contributions using the 3D-RISM theory combined with the geometric volume calculation. The hydration contributions are correlated with the surface properties of the protein. The thermal volume, which is the volume of voids around the protein induced by the thermal fluctuation of water molecules, is directly proportional to the accessible surface area of the protein. The interaction volume, which is the contribution of electrostatic interactions between the protein and water molecules, is apparently governed by the charged atomic groups on the protein surface. The polar atomic groups do not make any contribution to the interaction volume. The volume differences between low- and high-pressure structures of lysozyme are also analyzed by the present method.

  13. Resonant spectra of malignant breast cancer tumors using the three-dimensional electromagnetic fast multipole model.

    Science.gov (United States)

    El-Shenawee, Magda

    2004-01-01

    This paper presents an intensive numerical study of the resonance scattering of malignant breast cancer tumors. The three-dimensional electromagnetic model, based on the equivalence theorem, is used to obtain induced electric and magnetic currents on breast and tumor surfaces. The results show that the nonspherical malignant tumor can be characterized, based on its spectra, regardless of orientation, incident polarization, or incident or scattered directions. The spectra of the tumor depend solely upon its physical characteristics (i.e., shape and electrical properties); however, their locations are not functions of the depth of the tumor beneath the breast surface. This paper can be a guide in the selection of the frequency range at which the tumor resonates to produce the maximum signature at the receiver.

  14. Development and characterization of a human three-dimensional chondrosarcoma culture for in vitro drug testing.

    Directory of Open Access Journals (Sweden)

    Aurélien Voissiere

    Full Text Available It has been suggested that chemoresistance of chondrosarcoma (CHS, the cartilage tumor, is caused by the phenotypic microenvironmental features of the tumor tissue, mainly the chondrogenic extracellular matrix (ECM, and hypoxia. We developed and characterized a multicellular tumor spheroid (MCTS of human chondrosarcoma HEMC-SS cells to gain insight into tumor cell biology and drug response. At Day 7, HEMC-SS spheroids exhibited a homogeneous distribution of proliferative Ki-67 positive cells, whereas in larger spheroids (Day 14 and Day 20, proliferation was mainly localized in the periphery. In the core of larger spheroids, apoptotic cells were evidenced by TUNEL assay, and hypoxia by pimonidazole staining. Interestingly, VEGF excretion, evidenced by ELISA on culture media, was detectable from Day 14 spheroids, and increased as the spheroids grew in size. HEMC-SS spheroids synthesized a chondrogenic extracellular matrix rich in glycosaminoglycans and type-2 collagen. Finally, we investigated the sensitivity of Day 7 and Day 14 chondrosarcoma MCTS to hypoxia-activated prodrug TH-302 and doxorubicin compared with their 2D counterparts. As expected, TH-302 exhibited higher cytotoxic activity on larger hypoxic spheroids (Day 14 than on non-hypoxic spheroids (Day 7, with multicellular resistance index (MCRI values of 7.7 and 9.1 respectively. For doxorubicin, the larger-sized spheroids exhibited higher drug resistance (MCRI of 5.0 for Day 7 and 18.3 for Day 14 spheroids, possibly due to impeded drug penetration into the deep layer of spheroids, evidenced by its auto-fluorescence property. We have developed a model of human chondrosarcoma MCTS that combines an ECM rich in glycosaminoglycans with a high hypoxic core associated with VEGF excretion. This model could offer a more predictive in vitro chondrosarcoma system for screening drugs targeting tumor cells and their microenvironment.

  15. Development and validation of a three-dimensional computational fluid dynamics model of root canal irrigation.

    Science.gov (United States)

    Gao, Yuan; Haapasalo, Markus; Shen, Ya; Wu, Hongkun; Li, Bingdong; Ruse, N Dorin; Zhou, Xuedong

    2009-09-01

    Root canal irrigation plays an important role in the debridement and disinfection of the root canal system and is an integral part of root canal preparation procedures. The aim was to construct a three-dimensional computational fluid dynamics (CFD) model of root canal irrigation, with a suitable turbulence model, and validate it to provide a novel method for studying the root canal irrigation. A camcorder was used to record the effect of irrigation in the in vitro model. An exact replica of the geometry and the physical parameters of the in vitro irrigation model were used in CFD analysis, considering four turbulent models. The in vitro irrigation model was used as the reference for the evaluation of the CFD models. The result showed that CFD analysis based on a shear stress transport (SST) k-omega turbulence model was in close agreement with the in vitro irrigation model. The in vitro and CFD analyses showed that the irrigant in the curved canal flushes only up to a limited distance beyond the tip of the needle. The results of the CFD analysis also showed that laminar flow exists in the needle lumen and transit the transitional and turbulent flow around the side-vent outlet of the needle and needle tip. The results suggested that CFD based on a SST k-omega turbulence model has the potential to serve as a platform for the study of root canal irrigation.

  16. Three-Dimensional Modeling of Fluid and Heat Transport in an Accretionary Complex

    Science.gov (United States)

    Paula, C. A.; Ge, S.; Screaton, E. J.

    2001-12-01

    As sediments are scraped off of the subducting oceanic crust and accreted to the overriding plate, the rapid loading causes pore pressures in the underthrust sediments to increase. The change in pore pressure drives fluid flow and heat transport within the accretionary complex. Fluid is channeled along higher permeability faults and fractures and expelled at the seafloor. In this investigation, we examined the effects of sediment loading on fluid flow and thermal transport in the decollement at the Barbados Ridge subduction zone. Both the width and thickness of the Barbados Ridge accretionary complex increase from north to south. The presence of mud diapers south of the Tiburon Rise and an observed southward decrease in heat flow measurements indicate that the increased thickness of the southern Barbados accretionary prism affects the transport of chemicals and heat by fluids. The three-dimensional geometry and physical properties of the accretionary complex were utilized to construct a three-dimensional fluid flow/heat transport model. We calculated the pore pressure change due to a period of sediment loading and added this to steady-state pressure conditions to generate initial conditions for transient simulations. We then examined the diffusion of pore pressure and possible perturbation of the thermal regime over time due to loading of the underthrust sediments. The model results show that the sediment-loading event was sufficient to create small temperature fluctuations in the decollement zone. The magnitude of temperature fluctuation in the decollement was greatest at the deformation front but did not vary significantly from north to south of the Tiburon Rise.

  17. The sensing and display of three-dimensional information with emphasis on solid modelling: Status and applications

    Science.gov (United States)

    Gerhardt, L. A.

    1985-09-01

    The sensing of three dimensional information is addressed, the display/representation of three dimensional information is considered. With respect to the sensing of three dimensional information, a variety of approaches are discussed including the use of structured light, the use of displaced sensors to develop stereo pairs, and coherence processing and time of flight measurement. Other techniques described are interpretation of object motion as a measurement of depth perception, and general methods for utilizing depth of field. The advantages and disadvantages of each are discussed and comparisons made. Three dimensional display techniques is also discussed. The appraoches covered include graphics, stereo pairs, holograms, vibrating mirrors, and other optical systems. Applications are reviewed with examples of results such as the use of vibrating mirror technology for the three dimensional display of compterized tomography. Solid modelling as an approach to the display and representation of three dimensional information is reviewed. Following a definition of solid modelling, the advantages of this generic approach are reviewed and analyzed. The relationship of solid modelling to robotics and artificial intelligence is made, and trends cited with respect to hardware costs, portability of software, computational efficiency, display resolution, and neutral data bases. The paper concludes by giving examples of some of the key applications of solid modelling in the automative industry, aircraft industry and CAM, among others.

  18. Building a three-dimensional model of the upper gastrointestinal tract for computer simulations of swallowing.

    Science.gov (United States)

    Gastelum, Alfonso; Mata, Lucely; Brito-de-la-Fuente, Edmundo; Delmas, Patrice; Vicente, William; Salinas-Vázquez, Martín; Ascanio, Gabriel; Marquez, Jorge

    2016-03-01

    We aimed to provide realistic three-dimensional (3D) models to be used in numerical simulations of peristaltic flow in patients exhibiting difficulty in swallowing, also known as dysphagia. To this end, a 3D model of the upper gastrointestinal tract was built from the color cryosection images of the Visible Human Project dataset. Regional color heterogeneities were corrected by centering local histograms of the image difference between slices. A voxel-based model was generated by stacking contours from the color images. A triangle mesh was built, smoothed and simplified. Visualization tools were developed for browsing the model at different stages and for virtual endoscopy navigation. As result, a computer model of the esophagus and the stomach was obtained, mainly for modeling swallowing disorders. A central-axis curve was also obtained for virtual navigation and to replicate conditions relevant to swallowing disorders modeling. We show renderings of the model and discuss its use for simulating swallowing as a function of bolus rheological properties. The information obtained from simulation studies with our model could be useful for physicians in selecting the correct nutritional emulsions for patients with dysphagia.

  19. Modeling extreme (Carrington-type) space weather events using three-dimensional MHD code simulations

    Science.gov (United States)

    Ngwira, C. M.; Pulkkinen, A. A.; Kuznetsova, M. M.; Glocer, A.

    2013-12-01

    There is growing concern over possible severe societal consequences related to adverse space weather impacts on man-made technological infrastructure and systems. In the last two decades, significant progress has been made towards the modeling of space weather events. Three-dimensional (3-D) global magnetohydrodynamics (MHD) models have been at the forefront of this transition, and have played a critical role in advancing our understanding of space weather. However, the modeling of extreme space weather events is still a major challenge even for existing global MHD models. In this study, we introduce a specially adapted University of Michigan 3-D global MHD model for simulating extreme space weather events that have a ground footprint comparable (or larger) to the Carrington superstorm. Results are presented for an initial simulation run with ``very extreme'' constructed/idealized solar wind boundary conditions driving the magnetosphere. In particular, we describe the reaction of the magnetosphere-ionosphere system and the associated ground induced geoelectric field to such extreme driving conditions. We also discuss the results and what they might mean for the accuracy of the simulations. The model is further tested using input data for an observed space weather event to verify the MHD model consistence and to draw guidance for future work. This extreme space weather MHD model is designed specifically for practical application to the modeling of extreme geomagnetically induced electric fields, which can drive large currents in earth conductors such as power transmission grids.

  20. [Building an effective nonlinear three-dimensional finite-element model of human thoracolumbar spine].

    Science.gov (United States)

    Zeng, Zhi-Li; Cheng, Li-Ming; Zhu, Rui; Wang, Jian-Jie; Yu, Yan

    2011-08-23

    To build an effective nonlinear three-dimensional finite-element (FE) model of T(11)-L(3) segments for a further biomechanical study of thoracolumbar spine. The CT (computed tomography) scan images of healthy adult T(11)-L(3) segments were imported into software Simpleware 2.0 to generate a triangular mesh model. Using software Geomagic 8 for model repair and optimization, a solid model was generated into the finite element software Abaqus 6.9. The reasonable element C3D8 was selected for bone structures. Created between bony endplates, the intervertebral disc was subdivided into nucleus pulposus and annulus fibrosus (44% nucleus, 56% annulus). The nucleus was filled with 5 layers of 8-node solid elements and annulus reinforced by 8 crisscross collagenous fiber layers. The nucleus and annulus were meshed by C3D8RH while the collagen fibers meshed by two node-truss elements. The anterior (ALL) and posterior (PLL) longitudinal ligaments, flavum (FL), supraspinous (SSL), interspinous (ISL) and intertransverse (ITL) ligaments were modeled with S4R shell elements while capsular ligament (CL) was modeled with 3-node shell element. All surrounding ligaments were represented by envelope of 1 mm uniform thickness. The discs and bone structures were modeled with hyper-elastic and elasto-plastic material laws respectively while the ligaments governed by visco-elastic material law. The nonlinear three-dimensional finite-element model of T(11)-L(3) segments was generated and its efficacy verified through validating the geometric similarity and disc load-displacement and stress distribution under the impact of violence. Using ABAQUS/ EXPLICIT 6.9 the explicit dynamic finite element solver, the impact test was simulated in vitro. In this study, a 3-dimensional, nonlinear FE model including 5 vertebrae, 4 intervertebral discs and 7 ligaments consisted of 78 887 elements and 71 939 nodes. The model had good geometric similarity under the same conditions. The results of FEM

  1. Software Package \\Nesvetay-3D" for modeling three-dimensional flows of monatomic rarefied gas

    Directory of Open Access Journals (Sweden)

    V. A. Titarev

    2014-01-01

    Full Text Available Analysis of three-dimensional rarefied gas flowsin microdevices (micropipes, micropumps etc and over re-entry vehicles requires development of methods of computational modelling. One of such methods is the direct numerical solution of the Boltzmann kinetic equation for the velocity distribution function with either exact or approximate (model collision integral. At present, for flows of monatomic rarefied gas the Shakhov model kinetic equation, also called S-model, has gained wide-spread use. The equation can be regarded as a model equation of the incomplete thirdorder approximation. Despite its relative simplicity, the S-model is still a complicated integrodifferential equation of high dimension. The numerical solution of such an equation requires high-accuracy parallel methods.The present work is a review of recent results concerning the development and application of three-dimensional computer package Nesvetay-3D intended for modelling of rarefied gas flows. The package solves Boltzmann kinetic equation with the BGK (Krook and Shakhov model collision integrals using the discrete velocity approach. Calculations are carried out in non-dimensional variables. A finite integration domain and a mesh are introduced in the molecular velocity space. Next, the kinetic equation is re-written as a system of kinetic equations for each of the discrete velocities. The system is solved using an implicit finite-volume method of Godunov type. The steady-state solution is computed by a time marching method. High order of spatial accuracy is achieved by using a piece-wise linear representation of the distribution function in each spatial cell. In general, the coefficients of such an approximation are found using the least-square method. Arbitrary unstructured meshes in the physical space can be used in calculations, which allow considering flows over objects of general geometrical shape. Conservative property of the method with respect to the model collision

  2. Matching experimental and three dimensional numerical models for structural vibration problems with uncertainties

    Science.gov (United States)

    Langer, P.; Sepahvand, K.; Guist, C.; Bär, J.; Peplow, A.; Marburg, S.

    2018-03-01

    The simulation model which examines the dynamic behavior of real structures needs to address the impact of uncertainty in both geometry and material parameters. This article investigates three-dimensional finite element models for structural dynamics problems with respect to both model and parameter uncertainties. The parameter uncertainties are determined via laboratory measurements on several beam-like samples. The parameters are then considered as random variables to the finite element model for exploring the uncertainty effects on the quality of the model outputs, i.e. natural frequencies. The accuracy of the output predictions from the model is compared with the experimental results. To this end, the non-contact experimental modal analysis is conducted to identify the natural frequency of the samples. The results show a good agreement compared with experimental data. Furthermore, it is demonstrated that geometrical uncertainties have more influence on the natural frequencies compared to material parameters and material uncertainties are about two times higher than geometrical uncertainties. This gives valuable insights for improving the finite element model due to various parameter ranges required in a modeling process involving uncertainty.

  3. A method for automatic feature points extraction of human vertebrae three-dimensional model

    Science.gov (United States)

    Wu, Zhen; Wu, Junsheng

    2017-05-01

    A method for automatic extraction of the feature points of the human vertebrae three-dimensional model is presented. Firstly, the statistical model of vertebrae feature points is established based on the results of manual vertebrae feature points extraction. Then anatomical axial analysis of the vertebrae model is performed according to the physiological and morphological characteristics of the vertebrae. Using the axial information obtained from the analysis, a projection relationship between the statistical model and the vertebrae model to be extracted is established. According to the projection relationship, the statistical model is matched with the vertebrae model to get the estimated position of the feature point. Finally, by analyzing the curvature in the spherical neighborhood with the estimated position of feature points, the final position of the feature points is obtained. According to the benchmark result on multiple test models, the mean relative errors of feature point positions are less than 5.98%. At more than half of the positions, the error rate is less than 3% and the minimum mean relative error is 0.19%, which verifies the effectiveness of the method.

  4. A three-dimensional finite element model for biomechanical analysis of the hip.

    Science.gov (United States)

    Chen, Guang-Xing; Yang, Liu; Li, Kai; He, Rui; Yang, Bin; Zhan, Yan; Wang, Zhi-Jun; Yu, Bing-Nin; Jian, Zhe

    2013-11-01

    The objective of this study was to construct a three-dimensional (3D) finite element model of the hip. The images of the hip were obtained from Chinese visible human dataset. The hip model includes acetabular bone, cartilage, labrum, and bone. The cartilage of femoral head was constructed using the AutoCAD and Solidworks software. The hip model was imported into ABAQUS analysis system. The contact surface of the hip joint was meshed. To verify the model, the single leg peak force was loaded, and contact area of the cartilage and labrum of the hip and pressure distribution in these structures were observed. The constructed 3D hip model reflected the real hip anatomy. Further, this model reflected biomechanical behavior similar to previous studies. In conclusion, this 3D finite element hip model avoids the disadvantages of other construction methods, such as imprecision of cartilage construction and the absence of labrum. Further, it provides basic data critical for accurately modeling normal and abnormal loads, and the effects of abnormal loads on the hip.

  5. Three-dimensional magnetotelluric modeling in anisotropic media using edge-based finite element method

    Science.gov (United States)

    Xiao, Tiaojie; Liu, Yun; Wang, Yun; Fu, Li-Yun

    2018-02-01

    It is important to understand how magnetotelluric (MT) modeling can most effectively be performed in general anisotropic media. However, previous studies in this area have mainly focused on the use of one-dimensional (1D) and two-dimensional (2D) algorithms. Thus, building on earlier work, it is important to study the performance of three-dimensional (3D) modeling in arbitrary conductivity media; therefore, an edge-based finite element (FE) method has been developed for 3D MT modeling in arbitrary conductivity media. This approach is based on the initial derivation of a series of equivalent variational equations that are based on Maxwell equations, generated using the weighted residual method. Specific values were then obtained for coefficient matrixes of this edge-based FE method using hexahedral meshes, and the algorithm was verified by comparing its results with finite difference (FD) solutions generated using a 2D anisotropic model. Finally, the results of a 3D anisotropic model were analyzed detailed for three conditions; another 3D anisotropic model was designed and its results were compared with two isotropic models'.

  6. Three dimensional fuzzy influence analysis of fitting algorithms on integrated chip topographic modeling

    International Nuclear Information System (INIS)

    Liang, Zhong Wei; Wang, Yi Jun; Ye, Bang Yan; Brauwer, Richard Kars

    2012-01-01

    In inspecting the detailed performance results of surface precision modeling in different external parameter conditions, the integrated chip surfaces should be evaluated and assessed during topographic spatial modeling processes. The application of surface fitting algorithms exerts a considerable influence on topographic mathematical features. The influence mechanisms caused by different surface fitting algorithms on the integrated chip surface facilitate the quantitative analysis of different external parameter conditions. By extracting the coordinate information from the selected physical control points and using a set of precise spatial coordinate measuring apparatus, several typical surface fitting algorithms are used for constructing micro topographic models with the obtained point cloud. In computing for the newly proposed mathematical features on surface models, we construct the fuzzy evaluating data sequence and present a new three dimensional fuzzy quantitative evaluating method. Through this method, the value variation tendencies of topographic features can be clearly quantified. The fuzzy influence discipline among different surface fitting algorithms, topography spatial features, and the external science parameter conditions can be analyzed quantitatively and in detail. In addition, quantitative analysis can provide final conclusions on the inherent influence mechanism and internal mathematical relation in the performance results of different surface fitting algorithms, topographic spatial features, and their scientific parameter conditions in the case of surface micro modeling. The performance inspection of surface precision modeling will be facilitated and optimized as a new research idea for micro-surface reconstruction that will be monitored in a modeling process

  7. Verifying three-dimensional skull model reconstruction using cranial index of symmetry.

    Science.gov (United States)

    Kung, Woon-Man; Chen, Shuo-Tsung; Lin, Chung-Hsiang; Lu, Yu-Mei; Chen, Tzu-Hsuan; Lin, Muh-Shi

    2013-01-01

    Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM) implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D) CAD modeling. Thus, it is quite important to establish a symmetrically regular CAD/CAM reconstruction prior to depressing the contour. The purpose of this study is to verify the aesthetic outcomes of CAD models with regular contours using cranial index of symmetry (CIS). From January 2011 to June 2012, decompressive craniectomy (DC) was performed for 15 consecutive patients in our institute. 3-D CAD models of skull defects were reconstructed using commercial software. These models were checked in terms of symmetry by CIS scores. CIS scores of CAD reconstructions were 99.24±0.004% (range 98.47-99.84). CIS scores of these CAD models were statistically significantly greater than 95%, identical to 99.5%, but lower than 99.6% (ppairs signed rank test). These data evidenced the highly accurate symmetry of these CAD models with regular contours. CIS calculation is beneficial to assess aesthetic outcomes of CAD-reconstructed skulls in terms of cranial symmetry. This enables further accurate CAD models and CAM cranial implants with depressed contours, which are essential in patients with difficult scalp adaptation.

  8. Three-dimensional Modeling of Tidal Hydrodynamics in the San Francisco Estuary

    Directory of Open Access Journals (Sweden)

    Edward S. Gross

    2010-01-01

    Full Text Available Simulations of circulation in the San Francisco Estuary were performed with the three-dimensional TRIM3D hydrodynamic model using a generic length scale turbulence closure. The model was calibrated to reproduce observed tidal elevations, tidal currents, and salinity observations in the San Francisco Estuary using data collected during 1996-1998, a period of high and variable freshwater flow. It was then validated for 1994-1995, with emphasis on spring of 1994, a period of intensive data collection in the northern estuary. The model predicts tidal elevations and tidal currents accurately, and realistically predicts salinity at both the seasonal and tidal time scales. The model represents salt intrusion into the estuary accurately, and therefore accurately represents the salt balance. The model’s accuracy is adequate for its intended purposes of predicting salinity, analyzing gravitational circulation, and driving a particle-tracking model. Two applications were used to demonstrate the utility of the model. We estimated the components of the longitudinal salt flux and examined their dependence on flow conditions, and compared predicted salt intrusion with estimates from two empirical models.

  9. Three-dimensional electromagnetic model of the pulsed-power Z-pinch accelerator

    Directory of Open Access Journals (Sweden)

    D. V. Rose

    2010-01-01

    Full Text Available A three-dimensional, fully electromagnetic model of the principal pulsed-power components of the 26-MA ZR accelerator [D. H. McDaniel et al., in Proceedings of the 5th International Conference on Dense Z-Pinches (AIP, New York, 2002, p. 23] has been developed. This large-scale simulation model tracks the evolution of electromagnetic waves through the accelerator’s intermediate-storage capacitors, laser-triggered gas switches, pulse-forming lines, water switches, triplate transmission lines, and water convolute to the vacuum insulator stack. The insulator-stack electrodes are coupled to a transmission-line circuit model of the four-level magnetically insulated vacuum-transmission-line section and double-post-hole convolute. The vacuum-section circuit model is terminated by a one-dimensional self-consistent dynamic model of an imploding z-pinch load. The simulation results are compared with electrical measurements made throughout the ZR accelerator, and are in good agreement with the data, especially for times until peak load power. This modeling effort demonstrates that 3D electromagnetic models of large-scale, multiple-module, pulsed-power accelerators are now computationally tractable. This, in turn, presents new opportunities for simulating the operation of existing pulsed-power systems used in a variety of high-energy-density-physics and radiographic applications, as well as even higher-power next-generation accelerators before they are constructed.

  10. A three-dimensional model for thermal analysis in a vanadium flow battery

    International Nuclear Information System (INIS)

    Zheng, Qiong; Zhang, Huamin; Xing, Feng; Ma, Xiangkun; Li, Xianfeng; Ning, Guiling

    2014-01-01

    Highlights: • A three-dimensional model for thermal analysis in a VFB has been developed. • A quasi-static thermal behavior and temperature spatial distribution were showed. • Ohmic heat gets vital in heat generation if applied current density is large enough. • A lower porosity or a faster flow shows a more uniform temperature distribution. • The model shows good prospect in heat and temperature management for a VFB. - Abstract: A three-dimensional model for thermal analysis has been developed to gain a better understanding of thermal behavior in a vanadium flow battery (VFB). The model is based on a comprehensive description of mass, momentum, charge and energy transport and conservation, combining with a global kinetic model for reactions involving all vanadium species. The emphasis in this paper is placed on the heat losses inside a cell. A quasi-static behavior of temperature and the temperature spatial distribution were characterized via the thermal model. The simulations also indicate that the heat generation exhibits a strong dependence on the applied current density. The reaction rate and the over potential rise with an increased applied current density, resulting in the electrochemical reaction heat rises proportionally and the activation heat rises at a parabolic rate. Based on the Ohm’s law, the ohmic heat rises at a parabolic rate when the applied current density increases. As a result, the determining heat source varies when the applied current density changes. While the relative contribution of the three types of heat is dependent on the cell materials and cell geometry, the regularities of heat losses can also be attained via the model. In addition, the electrochemical reaction heat and activation heat have a lack of sensitivity to the porosity and flow rate, whereas an obvious increase of ohmic heat has been observed with the rise of the porosity. A lower porosity or a faster flow shows a better uniformity of temperature distribution in

  11. Kinetics of hematopoietic stem cells and supportive activities of stromal cells in a three-dimensional bone marrow culture system.

    Science.gov (United States)

    Harada, Tomonori; Hirabayashi, Yukio; Hatta, Yoshihiro; Tsuboi, Isao; Glomm, Wilhelm Robert; Yasuda, Masahiro; Aizawa, Shin

    2015-01-01

    In the bone marrow, hematopoietic cells proliferate and differentiate in close association with a three-dimensional (3D) hematopoietic microenvironment. Previously, we established a 3D bone marrow culture system. In this study, we analyzed the kinetics of hematopoietic cells, and more than 50% of hematopoietic progenitor cells, including CFU-Mix, CFU-GM and BFU-E in 3D culture were in a resting (non-S) phase. Furthermore, we examined the hematopoietic supportive ability of stromal cells by measuring the expression of various mRNAs relevant to hematopoietic regulation. Over the 4 weeks of culture, the stromal cells in the 3D culture are not needlessly activated and "quietly" regulate hematopoietic cell proliferation and differentiation during the culture, resulting in the presence of resting hematopoietic stem cells in the 3D culture for a long time. Thus, the 3D culture system may be a new tool for investigating hematopoietic stem cell-stromal cell interactions in vitro.

  12. Three-dimensional modeling of radiative and convective exchanges in the urban atmosphere

    International Nuclear Information System (INIS)

    Qu, Yongfeng

    2011-01-01

    In many micro-meteorological studies, building resolving models usually assume a neutral atmosphere. Nevertheless, urban radiative transfers play an important role because of their influence on the energy budget. In order to take into account atmospheric radiation and the thermal effects of the buildings in simulations of atmospheric flow and pollutant dispersion in urban areas, we have developed a three-dimensional (3D) atmospheric radiative scheme, in the atmospheric module of the Computational Fluid Dynamics model Code-Saturne. The radiative scheme was previously validated with idealized cases, using as a first step, a constant 3D wind field. In this work, the full coupling of the radiative and thermal schemes with the dynamical model is evaluated. The aim of the first part is to validate the full coupling with the measurements of the simple geometry from the 'Mock Urban Setting Test' (MUST) experiment. The second part discusses two different approaches to model the radiative exchanges in urban area with a comparison between Code-Saturne and SOLENE. The third part applies the full coupling scheme to show the contribution of the radiative transfer model on the airflow pattern in low wind speed conditions in a 3D urban canopy. In the last part we use the radiative-dynamics coupling to simulate a real urban environment and validate the modeling approach with field measurements from the 'Canopy and Aerosol Particles Interactions in Toulouse Urban Layer' (CAPITOUL). (author) [fr

  13. Three-dimensional numerical modelling of a magnetically deflected dc transferred arc in argon

    CERN Document Server

    Blais, A; Boulos, M I

    2003-01-01

    The aim of this work is to develop a numerical model for the deflection of dc transferred arcs using an external magnetic field as a first step into the modelling of industrial arc furnaces. The arc is deflected by the use of a conductor aligned parallel to the arc axis through which flows an electric current. The model is validated by comparing the results of axisymmetric calculations to modelling results from the scientific literature. The present model is found to be a good representation of the electric dc arc as differences with the literature are easily explained by model parameters such as the critical boundary conditions at the electrodes. Transferred arc cases exhibit the expected behaviour as the temperature T, the velocity v-vector and the electrical potential drop DELTA phi all increase with the arc current I and the argon flow rate Q. Three-dimensional geometry is implemented, enabling one to numerically deflect the arc. For the deflected arc cases, the deflection increases with the arc current I...

  14. Characterization and three-dimensional reconstruction of synthetic bone model foams

    Energy Technology Data Exchange (ETDEWEB)

    Gómez, S. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Vlad, M.D. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Faculty of Medical Bioengineering, “Gr. T. Popa” University of Medicine and Pharmacy, Str. Kogalniceanu 9-13, 700454 Iasi (Romania); López, J. [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain); Navarro, M. [Centre de Biotecnologia Animal i de Teràpia Gènica (CBATEG), Departament de Sanitat i d' Anatomia Animals, Universitat Autònoma de Barcelona, E-08193 Bellaterra, Cerdanyola del Vallès (Spain); Fernández, E., E-mail: enrique.fernandez@upc.edu [Interdepartment Research Group for the Applied Scientific Collaboration (IRGASC), Division of Biomaterials and Bioengineering, Technical University of Catalonia (UPC), Avda. Diagonal 647, E-08028 Barcelona (Spain)

    2013-08-01

    Sawbones© open-cell foams with different porosity grades are being used as synthetic bone-like models for in vitro mechanical and infiltration experiments. However, a comprehensive characterization of these foams is not available and there is a lack of reliable information about them. For this reason two of these foams (Refs. 1522-505 and -507) have been characterized at the micro architectural level by scanning electron microscopy, computed tomography and image data analysis. BoneJ open software and ImageJ open software were used to obtain the characteristic histomorphometric parameters and the three dimensional virtual models of the foams. The results showed that both foams, while having different macro porosities, appeared undistinguishable at the micro scale. Moreover, the micro structural features resembled those of osteoporotic rather than healthy trabecular bone. It is concluded that Sawbones© foams behave reasonably as synthetic bone-like models. Consequently, their use is recommended for in vitro comparison purposes of both mechanical and infiltration testing performed in real vertebra. Finally, the virtual models obtained, which are available under request, can favour comparisons between future self-similar in vitro experiments and computer simulations. - Highlights: • Sawbones© model foams have been scanned by μ-CT. • Histomorphometric indices and 3D virtual models have been obtained. • The results will be of use to understand biocement vertebra infiltration studies.

  15. Influence of cassette design on three-dimensional perfusion culture of artificial bone.

    Science.gov (United States)

    Du, Dajiang; Ushida, Takashi; Furukawa, Katsuko S

    2015-01-01

    Media perfusion is often required to maintain cell viability within topographically complex 3-dimensional scaffold cultures. Osteoblast-seeded scaffolds for bone regeneration require robust cell proliferation and survival both within the scaffold and over the exterior for optimal osteogenic capacity. Conventional press-fitting cassettes ensure internal fluid flow through the scaffold but may restrict external flow around the scaffold, resulting in a barren (cell-free) external scaffold surface. In this study, we aimed to solve this problem by modifying the cassette structure to enhance external flow in an oscillatory perfusion culture system. Mouse osteoblast-like MC 3T3-E1 cells were seeded in porous ceramic scaffolds and incubated for 3 days either under static culture conditions or in an oscillatory perfusion bioreactor. Scaffolds were held in the bioreactor with either conventional press-fitting cassettes or cassettes with rings to separate the scaffold exterior from the internal cassette wall. The external surfaces of scaffolds maintained under static conditions were well seeded, but cells failed to grow deeply into the core, reflecting poor internal chemotransport. Alternatively, scaffolds cultured by perfusion with press-fitting cassettes had poor cell viability at the cassette-external scaffold surface interface, but cells were widely distributed within the scaffold core. Scaffolds cultured using the modified cassettes with 1 or 2 rings exhibited uniformly distributed living cells throughout the internal pores and over the entire external surface, possibly because of the improved medium flow over the scaffold surface. This modified oscillatory perfusion culture system may facilitate the production of engineered bone with superior osteogenic capacity for grafting. © 2014 Wiley Periodicals, Inc.

  16. Ultrasonic characterization of three animal mammary tumors from three-dimensional acoustic tissue models

    Science.gov (United States)

    Mamou, Jonathan M.

    This dissertation investigated how three-dimensional (3D) tissue models can be used to improve ultrasonic tissue characterization (UTC) techniques. Anatomic sites in tissue responsible for ultrasonic scattering are unknown, which limits the potential applications of ultrasound for tumor diagnosis. Accurate 3D models of tumor tissues may help identify the scattering sites. Three mammary tumors were investigated: a rat fibroadenoma, a mouse carcinoma, and a mouse sarcoma. A 3D acoustic tissue model, termed 3D impedance map (3DZM), was carefully constructed from consecutive histologic sections for each tumor. Spectral estimates (scatterer size and acoustic concentration) were obtained from the 3DZMs and compared to the same estimates obtained with ultrasound. Scatterer size estimates for three tumors were found to be similar (within 10%). The 3DZMs were also used to extract tissue-specific scattering models. The scattering models were found to allow clear distinction between the three tumors. This distinction demonstrated that UTC techniques may be helpful for noninvasive clinical tumor diagnosis.

  17. A three-dimensional finite element model for the mechanics of cell-cell interactions.

    Science.gov (United States)

    Viens, Denis; Brodland, G Wayne

    2007-10-01

    Technical challenges, including significant ones associated with cell rearrangement, have hampered the development of three-dimensional finite element models for the mechanics of embryonic cells. These challenges have been overcome by a new formulation in which the contents of each cell, assumed to have a viscosity mu, are modeled using a system of orthogonal dashpots. This approach overcomes a stiffening artifact that affects more traditional models, in which space-filling viscous elements are used to model the cytoplasm. Cells are assumed to be polyhedral in geometry, and each n-sided polygonal face is subdivided into n triangles with a common node at the face center so that it needs not remain flat. A constant tension gamma is assumed to act along each cell-cell interface, and cell rearrangements occur through one of two complementary topological transformations. The formulation predicts mechanical interactions between pairs of similar or dissimilar cells that are consistent with experiments, two-dimensional simulations, contact angle theory, and intracellular pressure calculations. Simulations of the partial engulfment of one tissue type by another show that the formulation is able to model aggregates of several hundred cells without difficulty. Simulations carried out using this formulation suggest new experimental approaches for measuring cell surface tensions and interfacial tensions. The formulation holds promise as a tool for gaining insight into the mechanics of isolated or aggregated embryonic cells and for the design and interpretation of experiments that involve them.

  18. Three-Dimensional Modeling of a Robotic Fish Based on Real Carp Locomotion

    Directory of Open Access Journals (Sweden)

    Gonca Ozmen Koca

    2018-01-01

    Full Text Available This work focuses on developing a complete non-linear dynamic model comprising entirely kinematic and hydrodynamic effects of Carangiform locomotion based on the Lagrange approach by adapting the parameters and behaviors of a real carp. In order to imitate biological features, swimming patterns of a real carp for forward, turning and up-down motions are analyzed by using the Kineova 8.20 software. The proportional optimum link lengths according to actual size, swimming speed, flapping frequency, proportional physical parameters and different swimming motions of the real carp are investigated with the designed robotic fish model. Three-dimensional (3D locomotion is evaluated by tracking two trajectories in a MATLAB environment. A Reaching Law Control (RLC approach for inner loop (Euler angles-speed control and a guidance system for the outer loop (orientation control are proposed to provide an effective closed-loop control performance. In order to illustrate the 3D performance of the proposed closed loop control system in a virtual reality platform, the designed robotic fish model is also implemented using the Virtual Reality Modeling Language (VRML. Simulation and experimental analysis show that the proposed model gives us significant key solutions to design a fish-like robotic prototype.

  19. Computational modelling of variably saturated flow in porous media with complex three-dimensional geometries

    Science.gov (United States)

    McBride, D.; Cross, M.; Croft, N.; Bennett, C.; Gebhardt, J.

    2006-03-01

    A computational procedure is presented for solving complex variably saturated flows in porous media, that may easily be implemented into existing conventional finite-volume-based computational fluid dynamics codes, so that their functionality might be geared upon to readily enable the modelling of a complex suite of interacting fluid, thermal and chemical reaction process physics. This procedure has been integrated within a multi-physics finite volume unstructured mesh framework, allowing arbitrarily complex three-dimensional geometries to be modelled. The model is particularly targeted at ore heap-leaching processes, which encounter complex flow problems, such as infiltration into dry soil, drainage, perched water tables and flow through heterogeneous materials, but is equally applicable to any process involving flow through porous media, such as in environmental recovery processes. The computational procedure is based on the mixed form of the classical Richards equation, employing an adaptive transformed mixed algorithm that is numerically robust and significantly reduces compute (or CPU) time. The computational procedure is accurate (compares well with other methods and analytical data), comprehensive (representing any kind of porous flow model), and is computationally efficient. As such, this procedure provides a suitable basis for the implementation of large-scale industrial heap-leach models.

  20. Ischemic femoral head osteonecrosis in a piglet model causes three dimensional decrease in acetabular coverage.

    Science.gov (United States)

    Upasani, Vidyadhar V; Jeffords, Megan E; Farnsworth, Christine L; Padilla, David; Lopreiato, Nick; Aruwajoye, Olumide O; Kim, Harry K W

    2017-09-15

    Legg-Calve-Perthes disease (LCPD) is a childhood form of ischemic osteonecrosis marked by development of severe femoral head deformity and premature osteoarthritis. The pathogenesis of femoral head deformity has been studied extensively using a piglet model of ischemic osteonecrosis, however, accompanying acetabular changes have not been investigated. The purpose of this study was to determine if acetabular changes accompany femoral head deformity in a well-established piglet model of LCPD and to define the acetabular changes using three dimensional computed tomography (3-D CT) and modeling. Twenty-four piglets were surgically induced with ischemic osteonecrosis on the right side. The contralateral hip was used as control. At 8 weeks postoperative, pelvi were retrieved and imaged with CT. Custom software was used to measure acetabular morphologic parameters on 3-D CT images. Moderate to severe femoral head deformities were present in all animals. Acetabula with accompanying femoral head deformity had a significant decrease in acetabular version and tilt (p femoral head deformity following ischemic osteonecrosis produces specific and predictable changes to the shape of the acetabulum. Acetabular changes described in patients with LCPD were observed in the piglet model. This model may serve as a valuable tool to elucidate the relationship between femoral head and acetabular deformities. © 2017 Orthopaedic Research Society. Published by Wiley Periodicals, Inc. J Orthop Res. © 2017 Orthopaedic Research Society. Published by Wiley Periodicals, Inc.

  1. Three-dimensional spheroid cell culture of umbilical cord tissue-derived mesenchymal stromal cells leads to enhanced paracrine induction of wound healing.

    Science.gov (United States)

    Santos, Jorge M; Camões, Sérgio P; Filipe, Elysse; Cipriano, Madalena; Barcia, Rita N; Filipe, Mariana; Teixeira, Mariana; Simões, Sandra; Gaspar, Manuela; Mosqueira, Diogo; Nascimento, Diana S; Pinto-do-Ó, Perpétua; Cruz, Pedro; Cruz, Helder; Castro, Matilde; Miranda, Joana P

    2015-05-09

    The secretion of trophic factors by mesenchymal stromal cells has gained increased interest given the benefits it may bring to the treatment of a variety of traumatic injuries such as skin wounds. Herein, we report on a three-dimensional culture-based method to improve the paracrine activity of a specific population of umbilical cord tissue-derived mesenchymal stromal cells (UCX®) towards the application of conditioned medium for the treatment of cutaneous wounds. A UCX® three-dimensional culture model was developed and characterized with respect to spheroid formation, cell phenotype and cell viability. The secretion by UCX® spheroids of extracellular matrix proteins and trophic factors involved in the wound-healing process was analysed. The skin regenerative potential of UCX® three-dimensional culture-derived conditioned medium (CM3D) was also assessed in vitro and in vivo against UCX® two-dimensional culture-derived conditioned medium (CM2D) using scratch and tubulogenesis assays and a rat wound splinting model, respectively. UCX® spheroids kept in our three-dimensional system remained viable and multipotent and secreted considerable amounts of vascular endothelial growth factor A, which was undetected in two-dimensional cultures, and higher amounts of matrix metalloproteinase-2, matrix metalloproteinase-9, hepatocyte growth factor, transforming growth factor β1, granulocyte-colony stimulating factor, fibroblast growth factor 2 and interleukin-6, when compared to CM2D. Furthermore, CM3D significantly enhanced elastin production and migration of keratinocytes and fibroblasts in vitro. In turn, tubulogenesis assays revealed increased capillary maturation in the presence of CM3D, as seen by a significant increase in capillary thickness and length when compared to CM2D, and increased branching points and capillary number when compared to basal medium. Finally, CM3D-treated wounds presented signs of faster and better resolution when compared to untreated and CM

  2. Development of a geotechnical GIS for subsurface characterization with three dimensional modeling capabilities.

    Science.gov (United States)

    2006-06-01

    The New Hampshire Department of Transportation initiated this research to develop a geographical information system (GIS) that : visualizes subsurface conditions three dimensionally by pulling together geotechnical data containing spatial references....

  3. The Influence of IL-10 and TNFα on Chondrogenesis of Human Mesenchymal Stromal Cells in Three-Dimensional Cultures

    Directory of Open Access Journals (Sweden)

    Michal Jagielski

    2014-09-01

    Full Text Available Chondrogenic differentiated mesenchymal stromal cells (MSCs are a promising cell source for articular cartilage repair. This study was undertaken to determine the effectiveness of two three-dimensional (3D culture systems for chondrogenic MSC differentiation in comparison to primary chondrocytes and to assess the effect of Interleukin (IL-10 and Tumor Necrosis Factor (TNFα on chondrogenesis by MSCs in 3D high-density (H-D culture. MSCs were isolated from femur spongiosa, characterized using a set of typical markers and introduced in scaffold-free H-D cultures or non-woven polyglycolic acid (PGA scaffolds for chondrogenic differentiation. H-D cultures were stimulated with recombinant IL-10, TNFα, TNFα + IL-10 or remained untreated. Gene and protein expression of type II collagen, aggrecan, sox9 and TNFα were examined. MSCs expressed typical cell surface markers and revealed multipotency. Chondrogenic differentiated cells expressed cartilage-specific markers in both culture systems but to a lower extent when compared with articular chondrocytes. Chondrogenesis was more pronounced in PGA compared with H-D culture. IL-10 and/or TNFα did not impair the chondrogenic differentiation of MSCs. Moreover, in most of the investigated samples, despite not reaching significance level, IL-10 had a stimulatory effect on the type II collagen, aggrecan and TNFα expression when compared with the respective controls.

  4. The influence of IL-10 and TNFα on chondrogenesis of human mesenchymal stromal cells in three-dimensional cultures.

    Science.gov (United States)

    Jagielski, Michal; Wolf, Johannes; Marzahn, Ulrike; Völker, Anna; Lemke, Marion; Meier, Carola; Ertel, Wolfgang; Godkin, Owen; Arens, Stephan; Schulze-Tanzil, Gundula

    2014-09-09

    Chondrogenic differentiated mesenchymal stromal cells (MSCs) are a promising cell source for articular cartilage repair. This study was undertaken to determine the effectiveness of two three-dimensional (3D) culture systems for chondrogenic MSC differentiation in comparison to primary chondrocytes and to assess the effect of Interleukin (IL)-10 and Tumor Necrosis Factor (TNF)α on chondrogenesis by MSCs in 3D high-density (H-D) culture. MSCs were isolated from femur spongiosa, characterized using a set of typical markers and introduced in scaffold-free H-D cultures or non-woven polyglycolic acid (PGA) scaffolds for chondrogenic differentiation. H-D cultures were stimulated with recombinant IL-10, TNFα, TNFα + IL-10 or remained untreated. Gene and protein expression of type II collagen, aggrecan, sox9 and TNFα were examined. MSCs expressed typical cell surface markers and revealed multipotency. Chondrogenic differentiated cells expressed cartilage-specific markers in both culture systems but to a lower extent when compared with articular chondrocytes. Chondrogenesis was more pronounced in PGA compared with H-D culture. IL-10 and/or TNFα did not impair the chondrogenic differentiation of MSCs. Moreover, in most of the investigated samples, despite not reaching significance level, IL-10 had a stimulatory effect on the type II collagen, aggrecan and TNFα expression when compared with the respective controls.

  5. Biomechanical model of the thorax under blast loading: a three dimensional numerical study.

    Science.gov (United States)

    Goumtcha, Aristide Awoukeng; Thoral-Pierre, Karine; Roth, Sébastien

    2014-12-01

    Injury mechanisms due to high speed dynamic loads, such as blasts, are not well understood. These research fields are widely investigated in the literature, both at the experimental and numerical levels, and try to answer questions about the safety and efficiency of protection devices or biomechanical traumas. At a numerical level, the development of powerful mathematical models tends to study tolerance limits and injury mechanisms in order to avoid experimental tests which cannot be easily conducted. In a military framework, developing a fighter/soldier numerical model can help to the understanding of many traumas which are specific to soldier injuries, like mines, ballistic impacts or blast traumas. The aim of this study is to investigate the consequences of violent loads in terms of human body response, submitting a developed and validated three-dimensional thorax finite element (FE) model to blast loadings. Specific formulations of FE methods are used to simulate this loading, and its consequence on the biomechanical model. Mechanical parameters such as pressure in the air field and also in internal organs are observed, and these values are compared to the experimental data in the literature. This study gives encouraging results and allows going further in soldier trauma investigations. Copyright © 2014 John Wiley & Sons, Ltd.

  6. A three-dimensional mathematical model for liquid-fed direct methanol fuel cells

    Science.gov (United States)

    Ge, Jiabin; Liu, Hongtan

    A three-dimensional, single-phase, multi-component mathematical model has been developed for a liquid-fed direct methanol fuel cell (DMFC). The traditional continuity, momentum, and species conservation equations are coupled with electrochemical kinetics in both the anode and cathode catalyst layer. At the anode side, the liquid phase is considered, and at the cathode side only the gas phase is considered. Methanol crossover due to both diffusion and electro-osmotic drag from the anode to the cathode is taken into consideration and the effect is incorporated into the model using a mixed-potential at the cathode. A finite-volume-based CFD technique is used to develop the in-house numerical code and the code is successfully used to simulate the fuel cell performance as well as the multi-component behavior in a DMFC. The modeling results of polarization curves compare well with our experimental data. Subsequently, the model is used to study the effects of methanol crossover, the effects of porosities of the diffusion layer and the catalyst layer, the effects of methanol flow rates, and the effects of the channel shoulder widths.

  7. A three-dimensional model of solar radiation transfer in a non-uniform plant canopy

    Science.gov (United States)

    Levashova, N. T.; Mukhartova, Yu V.

    2018-01-01

    A three-dimensional (3D) model of solar radiation transfer in a non-uniform plant canopy was developed. It is based on radiative transfer equations and a so-called turbid medium assumption. The model takes into account the multiple scattering contributions of plant elements in radiation fluxes. These enable more accurate descriptions of plant canopy reflectance and transmission in different spectral bands. The model was applied to assess the effects of plant canopy heterogeneity on solar radiation transmission and to quantify the difference in a radiation transfer between photosynthetically active radiation PAR (=0.39-0.72 μm) and near infrared solar radiation NIR (Δλ = 0.72-3.00 μm). Comparisons of the radiative transfer fluxes simulated by the 3D model within a plant canopy consisted of sparsely planted fruit trees (plant area index, PAI - 0.96 m2 m-2) with radiation fluxes simulated by a one-dimensional (1D) approach, assumed horizontal homogeneity of plant and leaf area distributions, showed that, for sunny weather conditions with a high solar elevation angle, an application of a simplified 1D approach can result in an underestimation of transmitted solar radiation by about 22% for PAR, and by about 26% for NIR.

  8. Evaluation of three-dimensional anisotropic head model for mapping realistic electromagnetic fields of brain tissues

    Directory of Open Access Journals (Sweden)

    Woo Chul Jeong

    2015-08-01

    Full Text Available Electromagnetic fields provide fundamental data for the imaging of electrical tissue properties, such as conductivity and permittivity, in recent magnetic resonance (MR-based tissue property mapping. The induced voltage, current density, and magnetic flux density caused by externally injected current are critical factors for determining the image quality of electrical tissue conductivity. As a useful tool to identify bio-electromagnetic phenomena, precise approaches are required to understand the exact responses inside the human body subject to an injected currents. In this study, we provide the numerical simulation results of electromagnetic field mapping of brain tissues using a MR-based conductivity imaging method. First, we implemented a realistic three-dimensional human anisotropic head model using high-resolution anatomical and diffusion tensor MR images. The voltage, current density, and magnetic flux density of brain tissues were imaged by injecting 1 mA of current through pairs of electrodes on the surface of our head model. The current density map of anisotropic brain tissues was calculated from the measured magnetic flux density based on the linear relationship between the water diffusion tensor and the electrical conductivity tensor. Comparing the current density to the previous isotropic model, the anisotropic model clearly showed the differences between the brain tissues. This originates from the enhanced signals by the inherent conductivity contrast as well as the actual tissue condition resulting from the injected currents.

  9. Three-dimensional model of a selective theophylline-binding RNA molecule

    Energy Technology Data Exchange (ETDEWEB)

    Tung, Chang-Shung; Oprea, T.I.; Hummer, G.; Garcia, A.E.

    1995-07-01

    We propose a three-dimensional (3D) model for an RNA molecule that selectively binds theophylline but not caffeine. This RNA, which was found using SELEX [Jenison, R.D., et al., Science (1994) 263:1425] is 10,000 times more specific for theophylline (Kd=320 nM) than for caffeine (Kd=3.5 mM), although the two ligands are identical except for a methyl group substituted at N7 (present only in caffeine). The binding affinity for ten xanthine-based ligands was used to derive a Comparative Molecular Field Analysis (CoMFA) model (R{sup 2} = 0.93 for 3 components, with cross-validated R{sup 2} of 0.73), using the SYBYL and GOLPE programs. A pharmacophoric map was generated to locate steric and electrostatic interactions between theophylline and the RNA binding site. This information was used to identify putative functional groups of the binding pocket and to generate distance constraints. Based on a model for the secondary structure (Jenison et al., idem), the 3D structure of this RNA was then generated using the following method: each helical region of the RNA molecule was treated as a rigid body; single-stranded loops with specific end-to-end distances were generated. The structures of RNA-xanthine complexes were studied using a modified Monte Carlo algorithm. The detailed structure of an RNA-ligand complex model, as well as possible explanations for the theophylline selectivity will be discussed.

  10. Three-dimensional model of the late Cenozoic history of the Death Valley region, southeastern California

    Science.gov (United States)

    Serpa, Laura; Pavlis, Terry L.

    1996-12-01

    The accumulation of a large database on the timing and kinematics of late Cenozoic deformation in the Death Valley region of southeastern California indicates a complex three-dimensional history. On the basis of paleogeographic reconstructions we suggest the system was initiated as a localized pull-apart between two conjugate strike-slip faults, the Garlock and Furnace Creek faults, and evolved into a system characterized by distributed transtension related to the eastern California shear zone. Our reconstructions differ from previous models in the incorporation of significant vertical axis rotations of a number of crustal blocks to explain paleomagnetic data from the region. The model may resolve (1) a long-standing problem of the eastern termination of the Garlock fault which is explained here as a complex system of splays that initially terminated in the pull-apart between the Furnace Creek and Garlock systems; and (2) the complex architecture of the Black Mountains which is explained here in terms of initial extreme attenuation between the Garlock and Furnace Creek systems with overprinting by a fold and normal fault system that operated simultaneously as a result of distributed transtension. This model suggests much of the displacement field is taken up in rotations and translations, and the actual crustal thinning in our model is relatively small (50-66% of original thickness).

  11. Structural dynamic modeling for rotating blades using three dimensional finite elements

    Energy Technology Data Exchange (ETDEWEB)

    Kee, Young Jung; Shin, Sang Joon [Seoul National University, Seoul (Korea, Republic of)

    2015-04-15

    A precise analysis model was developed in this paper to investigate the dynamic characteristics of rotating composite blades. An eighteen-node solid-shell finite element was used to model the blade structures. This study is focused on geometrically nonlinear problems, because the material is assumed linear elastic. Incremental total Lagrangian approach was adopted to allow estimations on arbitrarily large rotations and displacements. The equations of motion for the finite element model were derived by using Hamilton's principle, and the resulting nonlinear equilibrium equations were solved by applying Newton-Raphson method combined with load control. A modified stress-strain relation was adopted to avoid the transverse shear locking problem, and fairly reliable results were obtained with no sign of locking phenomenon. The obtained numerical results were compared to several benchmark problems, and the results show a good correlation with the experimental data and other finite element analysis results. The vibration characteristics of shell- and beam-type blades were investigated. For shell-type blades, the dynamic characteristics may be significantly influenced by blade curvature, pre-twist, and geometric nonlinearity. For beam-type blades, one-dimensional beam and three-dimensional solid models offer comparable predictions for the straight and large aspect ratio blade. As blade aspect ratio decreases, considerable differences appear in the bending and torsion modes. The tip sweep angle tends to decrease the flap bending frequencies, but the torsion frequency increases with the tip sweep angle.

  12. Structural dynamic modeling for rotating blades using three dimensional finite elements

    International Nuclear Information System (INIS)

    Kee, Young Jung; Shin, Sang Joon

    2015-01-01

    A precise analysis model was developed in this paper to investigate the dynamic characteristics of rotating composite blades. An eighteen-node solid-shell finite element was used to model the blade structures. This study is focused on geometrically nonlinear problems, because the material is assumed linear elastic. Incremental total Lagrangian approach was adopted to allow estimations on arbitrarily large rotations and displacements. The equations of motion for the finite element model were derived by using Hamilton's principle, and the resulting nonlinear equilibrium equations were solved by applying Newton-Raphson method combined with load control. A modified stress-strain relation was adopted to avoid the transverse shear locking problem, and fairly reliable results were obtained with no sign of locking phenomenon. The obtained numerical results were compared to several benchmark problems, and the results show a good correlation with the experimental data and other finite element analysis results. The vibration characteristics of shell- and beam-type blades were investigated. For shell-type blades, the dynamic characteristics may be significantly influenced by blade curvature, pre-twist, and geometric nonlinearity. For beam-type blades, one-dimensional beam and three-dimensional solid models offer comparable predictions for the straight and large aspect ratio blade. As blade aspect ratio decreases, considerable differences appear in the bending and torsion modes. The tip sweep angle tends to decrease the flap bending frequencies, but the torsion frequency increases with the tip sweep angle.

  13. Laparoscopic acetabular fracture fixation after three-dimensional modelling and printing

    Directory of Open Access Journals (Sweden)

    Can-Jun Zeng

    2017-01-01

    Full Text Available Current surgical treatment of acetabular fractures is open reduction and internal fixation and requires a large incision resulting in considerable blood loss and a potentially long duration of recovery. We report a case of an acetabular fracture that received laparoscopic internal fixation after three-dimensional (3D modelling and printing of the acetabulum. A 43 year old male fell from a height of 3 m resulting in a right acetabulum anterior column fracture. Thin section computed tomography scanning with 0.6 mm increments and subsequent 3D reconstruction was performed, and a 3D model of the acetabulum and fracture was printed. The steel reconstruction plate was prebent in vivo and placed into the optimized position based on the 3D modelling and the optimized insert orientation and measured screw length were determined. The fracture was reduced and the plate placed laparoscopically without complications, and the patient had excellent functional recovery. Acetabular fractures are complex injuries, and while minimally invasive surgical techniques are used in many fields, they are not common for the treatment of acetabular fractures. 3D modelling is commonly used in medicine, and although 3D printing is used in some fields, it has not found widespread use in orthopedics.

  14. A Fully Three Dimensional Semianalytical Model for Shale Gas Reservoirs with Hydraulic Fractures

    Directory of Open Access Journals (Sweden)

    Yuwei Li

    2018-02-01

    Full Text Available Two challenges exist for modeling gas transport in shale. One is the existence of complex gas transport mechanisms, and the other is the impact of hydraulic fracture networks. In this study, a truly three dimensional semianalytical model was developed for shale gas reservoirs with hydraulic fractures of various shapes. Using the instantaneous point source solution, the pressure are solved for a bounded reservoir with fully 3D, partially penetrated hydraulic fractures of different strike angles and dip angles. The fractures could have various shapes such as rectangles, disks and ellipses. The shale gas diffusion equations considers complex transport mechanism such as gas slippage and gas diffusion. This semianalytical model is verified with a commercial software and an analytical method for single fully penetrated rectangle fracture, and the production results of shale gas are consistent. The impacts of fracture height and strike angles are investigated by five systematically constructed models. The comparison shows that the production increases proportionally with the fracture height, and decreases with the increase of strike angles. The method proposed in this study could also be applied in well testing to analyze the reservoir properties and used to forecast the production for tight oil and conventional resources.

  15. A three-dimensional water quality model and its application to Jiaozhou Bay, China

    Science.gov (United States)

    Zhang, Yan; Sun, Ying-lan; Yu, Jing; Yuan, Dao-wei; Zhang, Rui-jin

    2012-12-01

    A three-dimensional coupled physical and water quality model was developed and applied to the Jiaozhou Bay to study water quality involving nutrients, biochemical oxygen demand, dissolved oxygen, and phytoplankton that are closely related to eutrophication process. The physical model is a modified ECOM-si version with inclusion of flooding/draining processes over the intertidal zone. The water quality model is based on WASP5 which quantifies processes governing internal nutrients cycling, dissolved oxygen balance and phytoplankton growth. The model was used to simulate the spatial distribution and the temporal variation of water quality in the Jiaozhou Bay for the period of May 2005 to May 2006. In addition, the effect of reduction of riverine nutrients load was simulated and evaluated. The simulated results show that under the influence of nutrients discharged from river, the concentrations of nutrients and phytoplankton were higher in the northwest and northeast of the bay, and decreased from the inner bay to the outer. Affected by strong tidal mixing, the concentrations of all state variables were vertically homogeneous except in the deeper regions where a small gradient was found. Obvious seasonal variation of phytoplankton biomass was found, which exhibited two peaks in March and July, respectively. The variation of riverine waste loads had remarkable impact on nutrients concentration in coastal areas, but slightly altered the distribution in the center of the bay.

  16. Effective viscosity of a suspension of flagellar-beating microswimmers: Three-dimensional modeling.

    Science.gov (United States)

    Jibuti, Levan; Zimmermann, Walter; Rafaï, Salima; Peyla, Philippe

    2017-11-01

    Micro-organisms usually can swim in their liquid environment by flagellar or ciliary beating. In this numerical work, we analyze the influence of flagellar beating on the orbits of a swimming cell in a shear flow. We also calculate the effect of the flagellar beating on the rheology of a dilute suspension of microswimmers. A three-dimensional model is proposed for Chlamydomonas Reinhardtii swimming with a breaststroke-like beating of two anterior flagella modeled by two counter-rotating fore beads. The active swimmer model reveals unusual angular orbits in a linear shear flow. Namely, the swimmer sustains orientations transiently across the flow. Such behavior is a result of the interplay between shear flow and the swimmer's periodic beating motion of flagella, which exert internal torques on the cell body. This peculiar behavior has some significant consequences on the rheological properties of the suspension. We calculate Einstein's viscosity of the suspension composed of such isolated modeled microswimmers (dilute case) in a shear flow. We use numerical simulations based on a Rotne-Prager-like approximation for hydrodynamic interaction between simplified flagella and the cell body. The results show an increased intrinsic viscosity for active swimmer suspensions in comparison to nonactive ones as well as a shear thinning behavior in accordance with previous experimental measurements [Phys. Rev. Lett. 104, 098102 (2010)10.1103/PhysRevLett.104.098102].

  17. Virtual cerebral ventricular system: an MR-based three-dimensional computer model.

    Science.gov (United States)

    Adams, Christina M; Wilson, Timothy D

    2011-01-01

    The inherent spatial complexity of the human cerebral ventricular system, coupled with its deep position within the brain, poses a problem for conceptualizing its anatomy. Cadaveric dissection, while considered the gold standard of anatomical learning, may be inadequate for learning the anatomy of the cerebral ventricular system; even with intricate dissection, ventricular structures remain difficult to observe. Three-dimensional (3D) computer reconstruction of the ventricular system offers a solution to this problem. This study aims to create an accurate 3D computer reconstruction of the ventricular system with surrounding structures, including the brain and cerebellum, using commercially available 3D rendering software. Magnetic resonance imaging (MRI) scans of a male cadaver were segmented using both semiautomatic and manual tools. Segmentation involves separating voxels of different grayscale values to highlight specific neural structures. User controls enable adding or removing of structures, altering their opacity, and making cross-sectional slices through the model to highlight inner structures. Complex physiologic concepts, such as the flow of cerebrospinal fluid, are also shown using the 3D model of the ventricular system through a video animation. The model can be projected stereoscopically, to increase depth perception and to emphasize spatial relationships between anatomical structures. This model is suited for both self-directed learning and classroom teaching of the 3D anatomical structure and spatial orientation of the ventricles, their connections, and their relation to adjacent neural and skeletal structures. Copyright © 2011 American Association of Anatomists.

  18. Mxi1 influences cyst formation in three-dimensional cell culture

    Directory of Open Access Journals (Sweden)

    Yeon Joo Yook

    2012-03-01

    Full Text Available Cyst formation is a major characteristic of ADPKD and iscaused by the abnormal proliferation of epithelial cells. Renalcyst formation disrupts renal function and induces diversecomplications. The mechanism of cyst formation is unclear.mIMCD-3 cells were established to develop simple epithelialcell cysts in 3-D culture. We confirmed previously that Mxi1plays a role in cyst formation in Mxi1-deficient mice. Cysts inMxi1 transfectanted cells were showed by collagen or mebiolgels in 3-D cell culture system. Causative genes of ADPKDwere measured by q RT-PCR. Herein, Mxi1 transfectants rarelyformed a simple epithelial cyst and induced cell death.Overexpression of Mxi1 resulted in a decrease in the PKD1,PKD2 and c-myc mRNA relating to the pathway of cystformation. These data indicate that Mxi1 influences cystformation of mIMCD-3 cells in 3-D culture and that Mxi1 maycontrol the mechanism of renal cyst formation. [BMB reports2012; 45(3: 189-193

  19. Three-dimensional brain arteriovenous malformation models for clinical use and resident training.

    Science.gov (United States)

    Dong, Mengqi; Chen, Guangzhong; Li, Jianyi; Qin, Kun; Ding, Xiaowen; Peng, Chao; Zhou, Dong; Lin, Xiaofeng

    2018-01-01

    To fabricate three-dimensional (3D) models of brain arteriovenous malformation (bAVM) and report our experience with customized 3D printed models of patients with bAVM as an educational and clinical tool for patients, doctors, and surgical residents. Using computerized tomography angiography (CTA) or digital subtraction angiography (DSA) images, the rapid prototyping process was completed with specialized software and "in-house" 3D printing service. Intraoperative validation of model fidelity was performed by comparing to DSA images of the same patient during the endovascular treatment process. 3D bAVM models were used for preoperative patient education and consultation, surgical planning, and resident training. 3D printed bAVM models were successful made. By neurosurgeons' evaluation, the printed models precisely replicated the actual bAVM structure of the same patients (n = 7, 97% concordance, range 95%-99% with average of 3D models was associated shorter time for preoperative patient education and consultation, higher acceptable of the procedure for patients and relatives, shorter time between obtaining intraoperative DSA data and the start of endovascular treatment. Thirty surgical residents from residency programs tested the bAVM models and provided feedback on their resemblance to real bAVM structures and the usefulness of printed solid model as an educational tool. Patient-specific 3D printed models of bAVM can be constructed with high fidelity. 3D printed bAVM models were proven to be helpful in preoperative patient consultation, surgical planning, and resident training. Copyright © 2017 The Authors. Published by Wolters Kluwer Health, Inc. All rights reserved.

  20. A Forest Structure Dynamics Model for Driving Three-Dimensional Canopy Radiative Transfer Simulations

    Science.gov (United States)

    Yang, W.; Kobayashi, H.; Kondoh, A.

    2016-12-01

    Three-dimensional (3-D) Monte Carlo (MC)-based radiative transfer (RT) models can simulate highly detailed forest environments, and have produced simulations that agree well with observations; thus, they are routinely used for benchmarking in intercomparisons of RT models. However, MC-based RT models have not been widely applied to the development of inversion algorithms for generating global remote sensing products of forests, due mainly to the difficulties in obtaining realistic forest structures for a variety of forest biomes. In this study, we developed a Forest Structure Dynamics Model (FSDM) to facilitate the application of MC-based RT models to global forests. In this model, the tree architectures are determined based on allometric equations, and the tree locations within a study domain are determined by statistical distributions. The performance of the FSDM was evaluated using field measurements of forest landscapes at two sites located at Järvselja, Estonia and the Poker Flat Research Range (PFRR), USA, respectively. The bidirectional reflectance factor (BRF) for the two study sites was simulated by an MC-based RT model, based on the measured forest stands and modeled stands from the FSDM. A comparison of the results demonstrated that the simulated BRF based on the measured forest stands agreed well with the simulated BRF based on the modeled stands from the FSDM for the two study sites. The applicability of the FSDM to a leaf area index (LAI) retrieval algorithm was also verified using simulations from the MC-based RT model. The results indicate that the FSDM can provide reasonable forest structures to drive 3-D canopy RT models, with no loss of simulation accuracy. When combined with several existing field data sets and satellite products, the FSDM can be used to generate a typical stand structure database for global forest biomes.

  1. A Three-Dimensional Model of Women’s Empowerment: Implications in the Field of Microfinance and Future Directions

    Directory of Open Access Journals (Sweden)

    Marloes A. Huis

    2017-09-01

    Full Text Available Women’s empowerment is an important goal in achieving sustainable development worldwide. Offering access to microfinance services to women is one way to increase women’s empowerment. However, empirical evidence provides mixed results with respect to its effectiveness. We reviewed previous research on the impact of microfinance services on different aspects of women’s empowerment. We propose a Three-Dimensional Model of Women’s Empowerment to integrate previous findings and to gain a deeper understanding of women’s empowerment in the field of microfinance services. This model proposes that women’s empowerment can take place on three distinct dimensions: (1 the micro-level, referring to an individuals’ personal beliefs as well as actions, where personal empowerment can be observed (2 the meso-level, referring to beliefs as well as actions in relation to relevant others, where relational empowerment can be observed and (3 the macro-level, referring to outcomes in the broader, societal context where societal empowerment can be observed. Importantly, we propose that time and culture are important factors that influence women’s empowerment. We suggest that the time lag between an intervention and its evaluation may influence when empowerment effects on the different dimensions occur and that the type of intervention influences the sequence in which the three dimensions can be observed. We suggest that cultures may differ with respect to which components of empowerment are considered indicators of empowerment and how women’s position in society may influence the development of women’s empowerment. We propose that a Three-Dimensional Model of Women’s Empowerment should guide future programs in designing, implementing, and evaluating their interventions. As such our analysis offers two main practical implications. First, based on the model we suggest that future research should differentiate between the three dimensions of women

  2. A Three-Dimensional Model of Women's Empowerment: Implications in the Field of Microfinance and Future Directions.

    Science.gov (United States)

    Huis, Marloes A; Hansen, Nina; Otten, Sabine; Lensink, Robert

    2017-01-01

    Women's empowerment is an important goal in achieving sustainable development worldwide. Offering access to microfinance services to women is one way to increase women's empowerment. However, empirical evidence provides mixed results with respect to its effectiveness. We reviewed previous research on the impact of microfinance services on different aspects of women's empowerment. We propose a Three-Dimensional Model of Women's Empowerment to integrate previous findings and to gain a deeper understanding of women's empowerment in the field of microfinance services. This model proposes that women's empowerment can take place on three distinct dimensions: (1) the micro-level, referring to an individuals' personal beliefs as well as actions, where personal empowerment can be observed (2) the meso-level, referring to beliefs as well as actions in relation to relevant others, where relational empowerment can be observed and (3) the macro-level, referring to outcomes in the broader, societal context where societal empowerment can be observed. Importantly, we propose that time and culture are important factors that influence women's empowerment. We suggest that the time lag between an intervention and its evaluation may influence when empowerment effects on the different dimensions occur and that the type of intervention influences the sequence in which the three dimensions can be observed. We suggest that cultures may differ with respect to which components of empowerment are considered indicators of empowerment and how women's position in society may influence the development of women's empowerment. We propose that a Three-Dimensional Model of Women's Empowerment should guide future programs in designing, implementing, and evaluating their interventions. As such our analysis offers two main practical implications. First, based on the model we suggest that future research should differentiate between the three dimensions of women's empowerment to increase our

  3. A Three-Dimensional Model of Women’s Empowerment: Implications in the Field of Microfinance and Future Directions

    Science.gov (United States)

    Huis, Marloes A.; Hansen, Nina; Otten, Sabine; Lensink, Robert

    2017-01-01

    Women’s empowerment is an important goal in achieving sustainable development worldwide. Offering access to microfinance services to women is one way to increase women’s empowerment. However, empirical evidence provides mixed results with respect to its effectiveness. We reviewed previous research on the impact of microfinance services on different aspects of women’s empowerment. We propose a Three-Dimensional Model of Women’s Empowerment to integrate previous findings and to gain a deeper understanding of women’s empowerment in the field of microfinance services. This model proposes that women’s empowerment can take place on three distinct dimensions: (1) the micro-level, referring to an individuals’ personal beliefs as well as actions, where personal empowerment can be observed (2) the meso-level, referring to beliefs as well as actions in relation to relevant others, where relational empowerment can be observed and (3) the macro-level, referring to outcomes in the broader, societal context where societal empowerment can be observed. Importantly, we propose that time and culture are important factors that influence women’s empowerment. We suggest that the time lag between an intervention and its evaluation may influence when empowerment effects on the different dimensions occur and that the type of intervention influences the sequence in which the three dimensions can be observed. We suggest that cultures may differ with respect to which components of empowerment are considered indicators of empowerment and how women’s position in society may influence the development of women’s empowerment. We propose that a Three-Dimensional Model of Women’s Empowerment should guide future programs in designing, implementing, and evaluating their interventions. As such our analysis offers two main practical implications. First, based on the model we suggest that future research should differentiate between the three dimensions of women’s empowerment to

  4. Three-dimensional semi-idealized model for estuarine turbidity maxima in tidally dominated estuaries

    Science.gov (United States)

    Kumar, Mohit; Schuttelaars, Henk M.; Roos, Pieter C.

    2017-05-01

    We develop a three-dimensional idealized model that is specifically aimed at gaining insight in the physical mechanisms resulting in the formation of estuarine turbidity maxima in tidally dominated estuaries. First, the three-dimensional equations for water motion and suspended sediment concentration together with the so-called morphodynamic equilibrium condition, are scaled. Next, surface elevation, velocity and sediment concentration are expanded in a small parameter ɛ =AbarM2 / H , where AbarM2 is the mean amplitude of the M2 tide and H is the mean water depth at the seaward side. This results in a system of equations at each order in this small parameter. This ordering allows solving for the vertical structure of the velocity and suspended sediment concentration, independently of the horizontal dimension. After obtaining these vertical structures, the horizontal dependencies of the physical variables follow from solving a two-dimensional elliptic partial differential equation for the surface elevation. The availability of fine sediments in the estuary follows from a two-dimensional elliptic partial differential equation which results from requiring the system to be in morphodynamic equilibrium, and prescribing the total amount of easily erodible sediments available in the estuary. These elliptic equations for the surface elevation and sediment availability are solved numerically using the finite element method with cubic polynomials as basis functions. As a first application, the model is applied to the Ems estuary using a simplified geometry and bathymetric profiles characteristic for the years 1980 and 2005. The availability of fine sediments and location of maximum concentration are investigated for different lateral depth profiles. In the first experiment, a uniform lateral depth is considered. In this case, both the sediment availability and suspended sediment concentration are, as expected, uniform in the lateral direction. In 1980, the sediment is

  5. Role of a computer-generated three-dimensional laryngeal model in anatomy teaching for advanced learners.

    Science.gov (United States)

    Tan, S; Hu, A; Wilson, T; Ladak, H; Haase, P; Fung, K

    2012-04-01

    (1) To investigate the efficacy of a computer-generated three-dimensional laryngeal model for laryngeal anatomy teaching; (2) to explore the relationship between students' spatial ability and acquisition of anatomical knowledge; and (3) to assess participants' opinion of the computerised model. Forty junior doctors were randomised to undertake laryngeal anatomy study supplemented by either a three-dimensional computer model or two-dimensional images. Outcome measurements comprised a laryngeal anatomy test, the modified Vandenberg and Kuse mental rotation test, and an opinion survey. Mean scores ± standard deviations for the anatomy test were 15.7 ± 2.0 for the 'three dimensions' group and 15.5 ± 2.3 for the 'standard' group (p = 0.7222). Pearson's correlation between the rotation test scores and the scores for the spatial ability questions in the anatomy test was 0.4791 (p = 0.086, n = 29). Opinion survey answers revealed significant differences in respondents' perceptions of the clarity and 'user friendliness' of, and their preferences for, the three-dimensional model as regards anatomical study. The three-dimensional computer model was equivalent to standard two-dimensional images, for the purpose of laryngeal anatomy teaching. There was no association between students' spatial ability and functional anatomy learning. However, students preferred to use the three-dimensional model.

  6. Improved water resource management for a highly complex environment using three-dimensional groundwater modelling

    Science.gov (United States)

    Moeck, Christian; Affolter, Annette; Radny, Dirk; Dressmann, Horst; Auckenthaler, Adrian; Huggenberger, Peter; Schirmer, Mario

    2018-02-01

    A three-dimensional groundwater model was used to improve water resource management for a study area in north-west Switzerland, where drinking-water production is close to former landfills and industrial areas. To avoid drinking-water contamination, artificial groundwater recharge with surface water is used to create a hydraulic barrier between the contaminated sites and drinking-water extraction wells. The model was used for simulating existing and proposed water management strategies as a tool to ensure the utmost security for drinking water. A systematic evaluation of the flow direction between existing observation points using a developed three-point estimation method for a large number of scenarios was carried out. It is demonstrated that systematically applying the developed methodology helps to identify vulnerable locations which are sensitive to changing boundary conditions such as those arising from changes to artificial groundwater recharge rates. At these locations, additional investigations and protection are required. The presented integrated approach, using the groundwater flow direction between observation points, can be easily transferred to a variety of hydrological settings to systematically evaluate groundwater modelling scenarios.

  7. Modeling and numerical analysis of a three-dimensional shape memory alloy shell structure

    Science.gov (United States)

    Zhao, Pengtao; Qiu, Jinhao; Ji, Hongli; Wang, Mingyi; Nie, Rui

    2012-04-01

    In this paper, modeling and numerical analysis of a three dimensional shell structure made of shape memory alloy (SMA) are introduced. As a new smart material, SMA material has been applied in many fields due to two significant macroscopic phenomena which are called the shape memory effect (SME) and pseudoelasticity. The material of SMA exhibits two-way shape memory effect (TWSME) after undergoing especial heat treatment and thermo-mechanical training. This work investigates the numerical simulation and application of the SMA component: SMA strip, which has been pre-curved in the room temperature. The component is expected to extend upon heating and shorten on cooling along the curve. Hence the shape memory effect can be used to change the shape of the structure. The return mapping algorithm of the 3-D SMA thermomechanical constitutive equations based on Boyd-Lagoudas model is used in the finite element analysis to describe the material features of the SMA. In this paper, the ABAQUS finite element program has been utilized with a user material subroutine (UMAT) which is written in the FORTRAN code for the modeling of the SMA strip. The SMA component which has a certain initial transformation strain can emerge considerable deflection during the reverse phase transformation inducing by the temperature.

  8. In vitro three-dimensional cancer metastasis modeling: Past, present, and future

    Science.gov (United States)

    Wei-jing, Han; Wei, Yuan; Jiang-rui, Zhu; Qihui, Fan; Junle, Qu; Li-yu, Liu

    2016-01-01

    Metastasis is the leading cause of most cancer deaths, as opposed to dysregulated cell growth of the primary tumor. Molecular mechanisms of metastasis have been studied for decades and the findings have evolved our understanding of the progression of malignancy. However, most of the molecular mechanisms fail to address the causes of cancer and its evolutionary origin, demonstrating an inability to find a solution for complete cure of cancer. After being a neglected area of tumor biology for quite some time, recently several studies have focused on the impact of the tumor microenvironment on cancer growth. The importance of the tumor microenvironment is gradually gaining attention, particularly from the perspective of biophysics. In vitro three-dimensional (3-D) metastatic models are an indispensable platform for investigating the tumor microenvironment, as they mimic the in vivo tumor tissue. In 3-D metastatic in vitro models, static factors such as the mechanical properties, biochemical factors, as well as dynamic factors such as cell-cell, cell-ECM interactions, and fluid shear stress can be studied quantitatively. With increasing focus on basic cancer research and drug development, the in vitro 3-D models offer unique advantages in fundamental and clinical biomedical studies. Project supported by the National Basic Research Program of China (Grant No. 2013CB837200), the National Natural Science Foundation of China (Grant No. 11474345), and the Beijing Natural Science Foundation, China (Grant No. 7154221).

  9. Individualizing Management of Complex Esophageal Pathology Using Three-Dimensional Printed Models.

    Science.gov (United States)

    Dickinson, Karen J; Matsumoto, Jane; Cassivi, Stephen D; Reinersman, J Matthew; Fletcher, Joel G; Morris, Jonathan; Wong Kee Song, Louis M; Blackmon, Shanda H

    2015-08-01

    In complex esophageal cases, conventional two-dimensional imaging is limited in demonstrating anatomic relationships. We describe the utility of three-dimensional (3D) printed models for complex patients to individualize care. Oral effervescent agents, with positive enteric contrast, distended the esophagus during computed tomography (CT) scanning to facilitate segmentation during post-processing. The CT data were segmented, converted into a stereolithography file, and printed using photopolymer materials. In 1 patient with a left pneumonectomy, aortic bypass, and esophageal diversion, 3D printing enabled visualization of the native esophagus and facilitated endoscopic mucosal resection, followed by hiatal dissection and division of the gastroesophageal junction as treatment. In a second patient, 3D printing allowed enhanced visualization of multiple esophageal diverticula, allowing for optimization of the surgical approach. Printing of 3D anatomic models in patients with complex esophageal pathology facilitates planning the optimal surgical approach and anticipating potential difficulties for the multidisciplinary team. These models are invaluable for patient education. Copyright © 2015 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

  10. Experimental study and new three-dimensional kinetic modeling of foamy solution-gas drive processes.

    Science.gov (United States)

    Sun, Xiaofei; Zhang, Yanyu; Wang, Shilin; Song, Zhaoyao; Li, Peng; Wang, Changfa

    2018-03-12

    Foamy solution-gas drive processes in heavy oil reservoirs are very complex. The influence of some microscopic factors on this process is not fully understood due to limitations of traditional depletion tests. This study aims to investigate foamy solution-gas drive by experiments and simulations. First, the effects of the pressure depletion rate on critical gas saturation and foamy solution-gas drive processes were investigated by laboratory experiments. Second, a new three-dimensional foamy oil model that captures many important characteristics of foamy solution-gas drive, such as non-equilibrium behavior, gas evolution kinetics, and the effect of viscous forces on gas mobility, was developed. Last, the effects of some important parameters on foamy solution-gas drive were systematically investigated,and a model application was conducted in a typical foamy oil reservoir. The results indicate that the new model is capble of simulating many of the unusual behaviors observed in foamy solution-gas drive on a laboratory and field scales. High oil recoveries were obtained with a high oil viscosity, high depletion rate, long sandpack, and low solution gas-oil ratio. Foamy solution-gas drive processes are sensitive to the depletion rate, length, and critical gas saturation. The oil viscosity, solution GOR and diffusion coefficient are not sensitive factors.

  11. An Incompressible Three-Dimensional Multiphase Particle-in-Cell Model for Dense Particle Flows

    Science.gov (United States)

    Snider, D. M.

    2001-07-01

    A three-dimensional, incompressible, multiphase particle-in-cell method is presented for dense particle flows. The numerical technique solves the governing equations of the fluid phase using a continuum model and those of the particle phase using a Lagrangian model. Difficulties associated with calculating interparticle interactions for dense particle flows with volume fractions above 5% have been eliminated by mapping particle properties to an Eulerian grid and then mapping back computed stress tensors to particle positions. A subgrid particle, normal stress model for discrete particles which is robust and eliminates the need for an implicit calculation of the particle normal stress on the grid is presented. Interpolation operators and their properties are defined which provide compact support, are conservative, and provide fast solution for a large particle population. The solution scheme allows for distributions of types, sizes, and density of particles, with no numerical diffusion from the Lagrangian particle calculations. Particles are implicitly coupled to the fluid phase, and the fluid momentum and pressure equations are implicitly solved, which gives a robust solution.

  12. Improving Estimates of Regional Infrasound Propagation by Incorporating Three-Dimensional Weather Modeling

    Science.gov (United States)

    McKenna, M. H.; Alter, R. E.; Swearingen, M. E.; Wilson, D. K.

    2017-12-01

    Many larger sources, such as volcanic eruptions and nuclear detonations, produce infrasound (acoustic waves with a frequency lower than humans can hear, namely 0.1-20 Hz) that can propagate over global scales. But many smaller infrastructure sources, such as bridges, dams, and buildings, also produce infrasound, though with a lower amplitude that tends to propagate only over regional scales (up to 150 km). In order to accurately calculate regional-scale infrasound propagation, we have incorporated high-resolution, three-dimensional forecasts from the Weather Research and Forecasting (WRF) meteorological model into a signal propagation modeling system called Environmental Awareness for Sensor and Emitter Employment (EASEE), developed at the US Army Engineer Research and Development Center. To quantify the improvement of infrasound propagation predictions with more realistic weather data, we conducted sensitivity studies with different propagation ranges and horizontal resolutions and compared them to default predictions with no weather model data. We describe the process of incorporating WRF output into EASEE for conducting these acoustic propagation simulations and present the results of the aforementioned sensitivity studies.

  13. Three-dimensional tsunami propagation simulations using an unstructured mesh finite element model

    Science.gov (United States)

    Oishi, Yusuke; Piggott, Matthew D.; Maeda, Takuto; Kramer, Stephan C.; Collins, Gareth S.; Tsushima, Hiroaki; Furumura, Takashi

    2013-06-01

    Large-scale tsunami propagation simulations from the fault region to the coast are conducted using a three-dimensional (3-D) parallel unstructured mesh finite element code (Fluidity-ICOM). Unlike conventional 2-D approximation models, our tsunami model solves the full 3-D incompressible Navier-Stokes (NS) equations. The model is tested against analytical solutions to simple dispersive wave propagation problems. Comparisons of our 3-D NS model results with those from linear shallow water and linear dispersive wave models demonstrate that the 3-D NS model simulates the dispersion of very short wavelength components more accurately than the 2-D models. This improved accuracy is achieved using only a small number (three to five) of vertical layers in the mesh. The numerical error in the wave velocity compared with the linear wave theory is less than 3% up to kH = 40, where k is the wave number and H is the sea depth. The same 2-D and 3-D models are also used to simulate two earthquake-generated tsunamis off the coast of Japan: the 2004 off Kii peninsula and the 2011 off Tohoku tsunamis. The linear dispersive and NS models showed good agreement in the leading waves but differed especially in their near-source, short wavelength dispersive wave components. This is consistent with the results from earlier tests, suggesting that the 3-D NS simulations are more accurate. The computational performance on a parallel computer showed good scalability up to 512 cores. By using a combination of unstructured meshes and high-performance computers, highly accurate 3-D tsunami simulations can be conducted in a practical timescale.

  14. Modeling extreme "Carrington-type" space weather events using three-dimensional global MHD simulations

    Science.gov (United States)

    Ngwira, Chigomezyo M.; Pulkkinen, Antti; Kuznetsova, Maria M.; Glocer, Alex

    2014-06-01

    There is a growing concern over possible severe societal consequences related to adverse space weather impacts on man-made technological infrastructure. In the last two decades, significant progress has been made toward the first-principles modeling of space weather events, and three-dimensional (3-D) global magnetohydrodynamics (MHD) models have been at the forefront of this transition, thereby playing a critical role in advancing our understanding of space weather. However, the modeling of extreme space weather events is still a major challenge even for the modern global MHD models. In this study, we introduce a specially adapted University of Michigan 3-D global MHD model for simulating extreme space weather events with a Dst footprint comparable to the Carrington superstorm of September 1859 based on the estimate by Tsurutani et. al. (2003). Results are presented for a simulation run with "very extreme" constructed/idealized solar wind boundary conditions driving the magnetosphere. In particular, we describe the reaction of the magnetosphere-ionosphere system and the associated induced geoelectric field on the ground to such extreme driving conditions. The model setup is further tested using input data for an observed space weather event of Halloween storm October 2003 to verify the MHD model consistence and to draw additional guidance for future work. This extreme space weather MHD model setup is designed specifically for practical application to the modeling of extreme geomagnetically induced electric fields, which can drive large currents in ground-based conductor systems such as power transmission grids. Therefore, our ultimate goal is to explore the level of geoelectric fields that can be induced from an assumed storm of the reported magnitude, i.e., Dst˜=-1600 nT.

  15. Interactions between human macrophages and tumor cells in three-dimensional cultures.

    Science.gov (United States)

    Audran, R; Dazord, L; Toujas, L

    1994-11-01

    Human blood mononuclear cells were cultured for 7 days in hydrophobic plastic bags. Macrophages differentiated from monocytes and purified by elutriation were then cocultured with round-shaped aggregates of epithelial cells (spheroids). Spheroids prepared from the SK-MES-1 carcinoma cell line were cultured individually, under constant stirring, in multiwell plates coated with agarose. Macrophage/spheroid interactions were investigated under various experimental conditions. Macrophages activated with interferon gamma aggregated to each other and to spheroids, in contrast to control unactivated macrophages. Histological examination, after staining with a macrophage-specific monoclonal antibody, showed that both control and interferon-gamma-activated macrophages migrated between epithelial tumor cells and infiltrated the spheroids. The addition of anti-ICAM-1 monoclonal antibody inhibited macrophage homotypic aggregation as well as aggregation to and penetration into spheroids. The macrophages did not exert cytolytic effects, as judged by a chromium-51 release assay, but provoked a diminution of tritiated thymidine incorporation by tumor cells. Cytostatic activity was observed with effector: target ratios as low as 1:16, and was maximal (99% at a 1:1 E:T ratio) with macrophages differentiated in the presence of granulocyte/macrophage-colony-stimulating factor. The cytostatic effect was not related to tumor necrosis factor alpha secretion.

  16. Three-dimensional Wavelet-based Adaptive Mesh Refinement for Global Atmospheric Chemical Transport Modeling

    Science.gov (United States)

    Rastigejev, Y.; Semakin, A. N.

    2013-12-01

    Accurate numerical simulations of global scale three-dimensional atmospheric chemical transport models (CTMs) are essential for studies of many important atmospheric chemistry problems such as adverse effect of air pollutants on human health, ecosystems and the Earth's climate. These simulations usually require large CPU time due to numerical difficulties associated with a wide range of spatial and temporal scales, nonlinearity and large number of reacting species. In our previous work we have shown that in order to achieve adequate convergence rate and accuracy, the mesh spacing in numerical simulation of global synoptic-scale pollution plume transport must be decreased to a few kilometers. This resolution is difficult to achieve for global CTMs on uniform or quasi-uniform grids. To address the described above difficulty we developed a three-dimensional Wavelet-based Adaptive Mesh Refinement (WAMR) algorithm. The method employs a highly non-uniform adaptive grid with fine resolution over the areas of interest without requiring small grid-spacing throughout the entire domain. The method uses multi-grid iterative solver that naturally takes advantage of a multilevel structure of the adaptive grid. In order to represent the multilevel adaptive grid efficiently, a dynamic data structure based on indirect memory addressing has been developed. The data structure allows rapid access to individual points, fast inter-grid operations and re-gridding. The WAMR method has been implemented on parallel computer architectures. The parallel algorithm is based on run-time partitioning and load-balancing scheme for the adaptive grid. The partitioning scheme maintains locality to reduce communications between computing nodes. The parallel scheme was found to be cost-effective. Specifically we obtained an order of magnitude increase in computational speed for numerical simulations performed on a twelve-core single processor workstation. We have applied the WAMR method for numerical

  17. Cellular Responses to Mechanical Stress Selected Contribution: A Three-Dimensional Model for Assessment of in Vitro Toxicity in Balaena Mysticetus Renal Tissue

    Science.gov (United States)

    Goodwin, T. J.; Coate-Li, L.; Linnehan, R. M.; Hammond, T. G.

    2000-01-01

    This study established two- and three-dimensional renal proximal tubular cell cultures of the endangered species bowhead whale (Balaena mysticetus), developed SV40-transfected cultures, and cloned the 61-amino acid open reading frame for the metallothionein protein, the primary binding site for heavy metal contamination in mammals. Microgravity research, modulations in mechanical culture conditions (modeled microgravity), and shear stress have spawned innovative approaches to understanding the dynamics of cellular interactions, gene expression, and differentiation in several cellular systems. These investigations have led to the creation of ex vivo tissue models capable of serving as physiological research analogs for three-dimensional cellular interactions. These models are enabling studies in immune function, tissue modeling for basic research, and neoplasia. Three-dimensional cellular models emulate aspects of in vivo cellular architecture and physiology and may facilitate environmental toxicological studies aimed at elucidating biological functions and responses at the cellular level. Marine mammals occupy a significant ecological niche (72% of the Earth's surface is water) in terms of the potential for information on bioaccumulation and transport of terrestrial and marine environmental toxins in high-order vertebrates. Few ex vivo models of marine mammal physiology exist in vitro to accomplish the aforementioned studies. Techniques developed in this investigation, based on previous tissue modeling successes, may serve to facilitate similar research in other marine mammals.

  18. Three-dimensional Subsurface Geological Modeling of the Western Osaka Plane based on Borehole Data

    Science.gov (United States)

    Nonogaki, S.; Masumoto, S.; Nemoto, T.

    2012-12-01

    Three-dimensional (3D) geological model of subsurface structure plays an important role in developing infrastructures. In particular, the 3D geological model in urban area is quite helpful to solve social problems such as underground utilization, environmental preservation, and disaster assessment. Over the past few years, many studies have been made on algorithms for 3D geological modeling. However, most of them have given little attention to objectivity of the model and traceability of modeling procedures. The purpose of this study is to develop an algorithm for constructing a 3D geological model objectively and for maintaining high-traceability of modeling procedures. For the purpose of our work, we proposed a new algorithm for 3D geological modeling using gridded geological boundary surfaces and the "logical model of geologic structure". The geological boundary surface is given by a form of Digital Elevation Model (DEM). The DEM is generated based on geological information such as elevation, strike and dip by using a unique spline-fitting method. The logical model of geological structure is a mathematical model that defines a positional relation between geological boundary surfaces and geological units. The model is objectively given by recurrence formula derived from a sequence of geological events arranged in chronological order. We applied the proposed algorithm into constructing a 3D subsurface geological model of the western Osaka Plane, southwest Japan. The data used for 3D geological modeling is a set of borehole data provided by Osaka City and Kansai Geoinformatics Agency. As a result, we constructed a 3D model consistent with the subjective model reported in other studies. In addition, all information necessary for modeling, such as the used geological information, the parameters of surface fitting, and the logical model, was stored in text files. In conclusion, we can not only construct 3D geological model objectively but also maintain high

  19. Three-dimensional printing of anatomically accurate, patient specific intracranial aneurysm models.

    Science.gov (United States)

    Anderson, Jeff R; Thompson, Walker L; Alkattan, Abdulaziz K; Diaz, Orlando; Klucznik, Richard; Zhang, Yi J; Britz, Gavin W; Grossman, Robert G; Karmonik, Christof

    2016-05-01

    To develop and validate a method for creating realistic, patient specific replicas of cerebral aneurysms by means of fused deposition modeling. The luminal boundaries of 10 cerebral aneurysms, together with adjacent proximal and distal sections of the parent artery, were segmented based on DSA images, and corresponding virtual three-dimensional (3D) surface reconstructions were created. From these, polylactic acid and MakerBot Flexible Filament replicas of each aneurysm were created by means of fused deposition modeling. The accuracy of the replicas was assessed by quantifying statistical significance in the variations of their inner dimensions relative to 3D DSA images. Feasibility for using these replicas as flow phantoms in combination with phase contrast MRI was demonstrated. 3D printed aneurysm models were created for all 10 subjects. Good agreement was seen between the models and the source anatomy. Aneurysm diameter measurements of the printed models and source images correlated well (r=0.999; pmodels, respectively. 3D printed models could be imaged with flow via MRI. The 3D printed aneurysm models presented were accurate and were able to be produced inhouse. These models can be used for previously cited applications, but their anatomical accuracy also enables their use as MRI flow phantoms for comparison with ongoing studies of computational fluid dynamics. Proof of principle imaging experiments confirm MRI flow phantom utility. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

  20. [Construction and application of economy-pollution-environment three-dimensional evaluation model for district].

    Science.gov (United States)

    Fan, Xin-Gang; Mi, Wen-Bao; Ma, Zhen-Ning

    2015-02-01

    For deep analysis on the regional environmental economic system, the paper analyzes the mutual relation of regional economy development, environmental quality, environmental pollution, and builds the theoretical basis. Then, the economy-pollution-environment quality three-dimensional coupling evaluation model for district is constructed. It includes economic development level index, environmental pollution index, and environmental quality index. The model is a cube, which has spatialization and visualization characteristics. The model includes 8 sub cubes, which expresses 8 types of state, e. g. low pollution-inferior quality-low level of economic development etc. The model can be used to evaluate the status of region, divide development phase, analyze evolution trend etc. It has two ways including relative meaning evaluation (RME) and absolute meaning evaluation (AME). Based on the model, Yinchuan City in the Ningxia Hui Autonomous Region is used as an example for the empirical study. Using RME, compared with Guangzhou city, The result shows that the Yinchuan City has been a high pollution-low quality-low level of economic development state for a long period during 1996-2010. After 2007, the state changed to a high pollution-high quality-low level of economic development. Now, the environmental quality of Yinchuan city gets better, but pollutant discharge pressure is high, and tends to be the break point of high environment quality and low environment. With AME, using national standard, the Yinchuan City remains a high pollution-low quality-low level of economic development state during 1996-2010. Empirical research verifies that different target reference areas and relevant national standards have different main parameters, the evaluating result has an flexible range. The dimensionless data enhances the coupling of index. The data position in model increases the visibility to the environmental management decisions. The model improves mismatches of calculated data

  1. Establishment of highly metastatic KRAS mutant lung cancer cell sublines in long-term three-dimensional low attachment cultures.

    Directory of Open Access Journals (Sweden)

    Tomoyuki Nakano

    Full Text Available Decreased cell-substratum adhesion is crucially involved in metastasis. Previous studies demonstrated that lung cancer with floating cell clusters in histology is more likely to develop metastasis. In the present study, we investigated whether cancer cells in long-term, three-dimensional low attachment cultures acquire high metastatic potential; these cells were then used to examine the mechanisms underlying metastasis. Two KRAS-mutated adenocarcinoma cell lines (A549 and H441 were cultured and selected on ultra-low attachment culture dishes, and the resulting cells were defined as FL (for floating sublines. Cancer cells were inoculated into NOD/SCID mice via an intracardiac injection, and metastasis was evaluated using luciferase-based imaging and histopathology. In vitro cell growth (in attachment or suspension cultures, migration, and invasion were assayed. A whole genomic analysis was performed to identify key molecular alterations in FL sublines. Upon detachment on low-binding dishes, parental cells initially formed rounded spheroids with limited growth activity. However, over time in cultures, cells gradually formed smaller spheroids that grew slowly, and, after 3-4 months, we obtained FL sublines that regained prominent growth potential in suspension cultures. On ordinary dishes, FL cells reattached and exhibited a more spindle-shaped morphology than parental cells. No marked differences were observed in cell growth with attachment, migration, or invasion between FL sublines and parental cell lines; however, FL cells exhibited markedly increased growth potential under suspended conditions in vitro and stronger metastatic abilities in vivo. A genomic analysis identified epithelial-mesenchymal transition (EMT and c-Myc amplification in A549-FL and H441-FL cells, respectively, as candidate mechanisms for metastasis. The growth potential of FL cells was markedly inhibited by lentiviral ZEB1 knockdown in A549-FL cells and by the inhibition of

  2. Three-dimensional modelling of leachate recirculation using vertical wells in bioreactor landfills.

    Science.gov (United States)

    Feng, Shi-Jin; Chen, Zheng-Wei; Cao, Ben-Yi

    2016-12-01

    Bioreactor landfills use leachate recirculation to enhance the biodegradation of municipal solid waste and accelerate landfill stabilisation, which can provide significant environmental and economic benefits. Vertical wells are operated as a major method for leachate recirculation systems. The objectives of this article are to analyse the leachate migration in bioreactor landfills using vertical wells and to offer theoretical basis for the design of leachate recirculation systems. A three-dimensional numerical model was built using FLAC-3D, and this model can consider the saturated and unsaturated flow of leachate within anisotropic waste to reflect the actual conditions. First, main influence factors of leachate migration were analysed, including the vertical well height, hydraulic conductivity, and anisotropic coefficient, in a single-well recirculation system. Then, the effects of different configurations of a group-well system were studied and the optimal well spacing was obtained. Some key design parameters (e.g. the recirculation flow rate, volume of impact zone, radius of impact zone and time to reach steady state) were also evaluated. The results show that the hydraulic conductivity has a great impact on the optimal height of vertical wells and uniform configuration is the best option in terms of both volume of impact zone and time to reach steady state. © The Author(s) 2016.

  3. Three-Dimensional Mathematical Model of Oxygen Transport Behavior in Electroslag Remelting Process

    Science.gov (United States)

    Huang, Xuechi; Li, Baokuan; Liu, Zhongqiu

    2018-04-01

    A transient three-dimensional model has been proposed to investigate the oxygen transport behavior in electroslag remelting process. The electromagnetism, heat transfer, multiphase flow, and species transport were calculated simultaneously by finite volume method. The volume of fluid approach was adopted to trace the metal-slag-air three-phase flow. Based on the necessary thermodynamics of oxygen transport behavior, a kinetic model was established to predict the mass source terms in species transport equation. The kinetic correction factor was proposed to account for the effect of the oxide scale formed on the electrode on the FeO content in slag. Finally, the effect of applied current on the oxygen transfer was studied. The predicted result agrees well with the measured data when the kinetic correction factor is set to be 0.5. The temperature distribution that affects the thermodynamics differs at the interfaces. The oxygen in air is absorbed into slag due to the oxidation at the slag/air interface. The Fe2O3 in slag and the oxide scale contribute to the increase of FeO content in slag, and the latter one plays the leading role. The oxygen transfer from slag to metal mainly occurs during the formation of the droplet at the slag/metal droplet interface. With the current increasing from 1200 to 1800 A, the oxygen content increases from 76.4 to 89.8 ppm, and then slightly declines to 89.2 ppm when the current increases to 2100 A.

  4. A Flexible Fringe Projection Vision System with Extended Mathematical Model for Accurate Three-Dimensional Measurement

    Directory of Open Access Journals (Sweden)

    Suzhi Xiao

    2016-04-01

    Full Text Available In order to acquire an accurate three-dimensional (3D measurement, the traditional fringe projection technique applies complex and laborious procedures to compensate for the errors that exist in the vision system. However, the error sources in the vision system are very complex, such as lens distortion, lens defocus, and fringe pattern nonsinusoidality. Some errors cannot even be explained or rendered with clear expressions and are difficult to compensate directly as a result. In this paper, an approach is proposed that avoids the complex and laborious compensation procedure for error sources but still promises accurate 3D measurement. It is realized by the mathematical model extension technique. The parameters of the extended mathematical model for the ’phase to 3D coordinates transformation’ are derived using the least-squares parameter estimation algorithm. In addition, a phase-coding method based on a frequency analysis is proposed for the absolute phase map retrieval to spatially isolated objects. The results demonstrate the validity and the accuracy of the proposed flexible fringe projection vision system on spatially continuous and discontinuous objects for 3D measurement.

  5. A Flexible Fringe Projection Vision System with Extended Mathematical Model for Accurate Three-Dimensional Measurement.

    Science.gov (United States)

    Xiao, Suzhi; Tao, Wei; Zhao, Hui

    2016-04-28

    In order to acquire an accurate three-dimensional (3D) measurement, the traditional fringe projection technique applies complex and laborious procedures to compensate for the errors that exist in the vision system. However, the error sources in the vision system are very complex, such as lens distortion, lens defocus, and fringe pattern nonsinusoidality. Some errors cannot even be explained or rendered with clear expressions and are difficult to compensate directly as a result. In this paper, an approach is proposed that avoids the complex and laborious compensation procedure for error sources but still promises accurate 3D measurement. It is realized by the mathematical model extension technique. The parameters of the extended mathematical model for the 'phase to 3D coordinates transformation' are derived using the least-squares parameter estimation algorithm. In addition, a phase-coding method based on a frequency analysis is proposed for the absolute phase map retrieval to spatially isolated objects. The results demonstrate the validity and the accuracy of the proposed flexible fringe projection vision system on spatially continuous and discontinuous objects for 3D measurement.

  6. Three-Dimensional Mathematical Model of Oxygen Transport Behavior in Electroslag Remelting Process

    Science.gov (United States)

    Huang, Xuechi; Li, Baokuan; Liu, Zhongqiu

    2017-12-01

    A transient three-dimensional model has been proposed to investigate the oxygen transport behavior in electroslag remelting process. The electromagnetism, heat transfer, multiphase flow, and species transport were calculated simultaneously by finite volume method. The volume of fluid approach was adopted to trace the metal-slag-air three-phase flow. Based on the necessary thermodynamics of oxygen transport behavior, a kinetic model was established to predict the mass source terms in species transport equation. The kinetic correction factor was proposed to account for the effect of the oxide scale formed on the electrode on the FeO content in slag. Finally, the effect of applied current on the oxygen transfer was studied. The predicted result agrees well with the measured data when the kinetic correction factor is set to be 0.5. The temperature distribution that affects the thermodynamics differs at the interfaces. The oxygen in air is absorbed into slag due to the oxidation at the slag/air interface. The Fe2O3 in slag and the oxide scale contribute to the increase of FeO content in slag, and the latter one plays the leading role. The oxygen transfer from slag to metal mainly occurs during the formation of the droplet at the slag/metal droplet interface. With the current increasing from 1200 to 1800 A, the oxygen content increases from 76.4 to 89.8 ppm, and then slightly declines to 89.2 ppm when the current increases to 2100 A.

  7. Continuous data assimilation for the three-dimensional Brinkman–Forchheimer-extended Darcy model

    KAUST Repository

    Markowich, Peter A.

    2016-03-09

    In this paper we introduce and analyze an algorithm for continuous data assimilation for a three-dimensional Brinkman-Forchheimer-extended Darcy (3D BFeD) model of porous media. This model is believed to be accurate when the flow velocity is too large for Darcy\\'s law to be valid, and additionally the porosity is not too small. The algorithm is inspired by ideas developed for designing finite-parameters feedback control for dissipative systems. It aims to obtain improved estimates of the state of the physical system by incorporating deterministic or noisy measurements and observations. Specifically, the algorithm involves a feedback control that nudges the large scales of the approximate solution toward those of the reference solution associated with the spatial measurements. In the first part of the paper, we present a few results of existence and uniqueness of weak and strong solutions of the 3D BFeD system. The second part is devoted to the convergence analysis of the data assimilation algorithm. © 2016 IOP Publishing Ltd & London Mathematical Society.

  8. Methylquercetins stimulate melanin biosynthesis in a three-dimensional skin model.

    Science.gov (United States)

    Yamauchi, Kosei; Mitsunaga, Tohru

    2018-02-13

    In a previous study, we found that both synthetic 3-O-methylquercetin (3MQ) and 3,4',7-O-trimethylquercetin (34'7TMQ) increased extracellular melanin content. 34'7TMQ increased the activity of melanogenic enzymes by stimulating the p38 pathway and the expression of microphthalmia-associated transcription factor (MITF). In contrast, 3MQ increased the activity of melanogenic enzymes without the involvement of MITF, which suggests that 3MQ inhibits the degradation of melanogenic enzymes. In the present study, we investigated the effects of 3MQ and 34'7TMQ on melanogenesis in normal human melanocytes and using a commercial three-dimensional (3D) skin model system. Both 3MQ and 34'7TMQ elongated the dendrites of normal human melanocytes from a Caucasian donor, but did not stimulate melanogenesis in the melanocytes. In the 3D skin model, which included melanocytes from an Asian donor, 3MQ and 34'7TMQ increased and elongated the melanocytes and showed a tendency to stimulate melanogenesis. These results suggest that 3MQ and 34'7TMQ could be put to practical use in skin care products and agents aimed at preventing hair graying.

  9. Three-dimensional fuse deposition modeling of tissue-simulating phantom for biomedical optical imaging

    Science.gov (United States)

    Dong, Erbao; Zhao, Zuhua; Wang, Minjie; Xie, Yanjun; Li, Shidi; Shao, Pengfei; Cheng, Liuquan; Xu, Ronald X.

    2015-12-01

    Biomedical optical devices are widely used for clinical detection of various tissue anomalies. However, optical measurements have limited accuracy and traceability, partially owing to the lack of effective calibration methods that simulate the actual tissue conditions. To facilitate standardized calibration and performance evaluation of medical optical devices, we develop a three-dimensional fuse deposition modeling (FDM) technique for freeform fabrication of tissue-simulating phantoms. The FDM system uses transparent gel wax as the base material, titanium dioxide (TiO2) powder as the scattering ingredient, and graphite powder as the absorption ingredient. The ingredients are preheated, mixed, and deposited at the designated ratios layer-by-layer to simulate tissue structural and optical heterogeneities. By printing the sections of human brain model based on magnetic resonance images, we demonstrate the capability for simulating tissue structural heterogeneities. By measuring optical properties of multilayered phantoms and comparing with numerical simulation, we demonstrate the feasibility for simulating tissue optical properties. By creating a rat head phantom with embedded vasculature, we demonstrate the potential for mimicking physiologic processes of a living system.

  10. Gravity wave propagation in the realistic atmosphere based on a three-dimensional transfer function model

    Directory of Open Access Journals (Sweden)

    L. Sun

    2007-10-01

    Full Text Available In order to study the filter effect of the background winds on the propagation of gravity waves, a three-dimensional transfer function model is developed on the basis of the complex dispersion relation of internal gravity waves in a stratified dissipative atmosphere with background winds. Our model has successfully represented the main results of the ray tracing method, e.g. the trend of the gravity waves to travel in the anti-windward direction. Furthermore, some interesting characteristics are manifest as follows: (1 The method provides the distribution characteristic of whole wave fields which propagate in the way of the distorted concentric circles at the same altitude under the control of the winds. (2 Through analyzing the frequency and wave number response curve of the transfer function, we find that the gravity waves in a wave band of about 15–30 min periods and of about 200–400 km horizontal wave lengths are most likely to propagate to the 300-km ionospheric height. Furthermore, there is an obvious frequency deviation for gravity waves propagating with winds in the frequency domain. The maximum power of the transfer function with background winds is smaller than that without background winds. (3 The atmospheric winds may act as a directional filter that will permit gravity wave packets propagating against the winds to reach the ionospheric height with minimum energy loss.

  11. Advanced three-dimensional thermal modeling of a baseline spent fuel repository

    International Nuclear Information System (INIS)

    Altenbach, T.J.; Lowry, W.E.

    1980-01-01

    A three-dimensional thermal analysis using finite difference techniques was performed to determine the near-field response of a baseline spent fuel repository in a deep geologic salt medium. A baseline design incorporates previous thermal modeling experience and OWI recommendations for areal thermal loading in specifying the waste form properties, package details, and emplacement configuration. The base case in this thermal analysis considers one 10-year old PWR spent fuel assembly emplaced to yield a 36 kW/acre (8.9 W/m 2 ) loading. A unit cell model in an infinite array is used to simplify the problem and provide upper-bound temperatures. Boundary conditions are imposed which allow simulations to 1000 years. Variations studied include a comparison of ventilated and unventilated storage room conditions, emplacement packages with and without air gaps surrounding the canister, and room cool-down scenarios with ventilation following an unventilated state for retrieval purposes. It was found that at this low-power level, ventilating the emplacement room has an immediate cooling influence on the canister and effectively maintains the emplacement room floor near the temperature of the ventilating air

  12. Modeling dense-colloid and virus cotransport in three-dimensional porous media.

    Science.gov (United States)

    Katzourakis, Vasileios E; Chrysikopoulos, Constantinos V

    2015-10-01

    A three-dimensional numerical model was developed to investigate the simultaneous transport (cotransport) of dense colloids and viruses in homogeneous, water saturated, porous media with horizontal uniform flow. The dense colloids are assumed to exist in two different phases: suspended in the aqueous phase, and attached reversibly and/or irreversibly onto the solid matrix. The viruses are assumed to exist in four different phases: suspended in aqueous phase, attached onto the solid matrix, attached onto suspended colloids, and attached onto colloids already attached onto the solid matrix. The viruses in each of the four phases are assumed to undergo inactivation with different rates. Moreover, the suspended dense colloids as well as viruses attached onto suspended dense colloids are assumed to exhibit a "restricted" settling velocity as a consequence of the gravitational force; whereas, viruses due to their small sizes and densities are assumed to have negligible "restricted" settling velocity. The governing differential equations were solved numerically with the finite difference schemes, implicitly or explicitly implemented. Model simulations have shown that the presence of dense colloid particles can either enhance or hinder the horizontal transport of viruses, but also can increase the vertical migration of viruses. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Three-dimensional parametric modeling of bicuspid aortopathy and comparison with computational flow predictions.

    Science.gov (United States)

    Pasta, Salvatore; Gentile, Giovanni; Raffa, Giuseppe M; Scardulla, Francesco; Bellavia, Diego; Luca, Angelo; Pilato, Michele; Scardulla, Cesare

    2017-09-01

    Bicuspid aortic valve (BAV)-associated ascending aneurysmal aortopathy (namely "bicuspid aortopathy") is a heterogeneous disease making surgeon predictions particularly challenging. Computational flow analysis can be used to evaluate the BAV-related hemodynamic disturbances, which likely lead to aneurysm enlargement and progression. However, the anatomic reconstruction process is time consuming so that predicting hemodynamic and structural evolution by computational modeling is unfeasible in routine clinical practice. The aim of the study was to design and develop a parametric program for three-dimensional (3D) representations of aneurysmal aorta and different BAV phenotypes starting from several measures derived by computed-tomography angiography (CTA). Assuming that wall shear stress (WSS) has an important implication on bicuspid aortopathy, computational flow analyses were then performed to estimate how different would such an important parameter be, if a parametric aortic geometry was used as compared to standard geometric reconstructions obtained by CTA scans. Morphologic parameters here documented can be used to rapidly model the aorta and any phenotypes of BAV. t-test and Bland-Altman plot demonstrated that WSS obtained by flow analysis of parametric aortic geometries was in good agreement with that obtained from the flow analysis of CTA-related geometries. The proposed program offers a rapid and automated tool for 3D anatomic representations of bicuspid aortopathy with promising application in routine clinical practice by reducing the amount of time for anatomic reconstructions. © 2017 International Center for Artificial Organs and Transplantation and Wiley Periodicals, Inc.

  14. Three-dimensional Cascaded Lattice Boltzmann Model for Thermal Convective Flows

    Science.gov (United States)

    Hajabdollahi, Farzaneh; Premnath, Kannan

    2017-11-01

    Fluid motion driven by thermal effects, such as due to buoyancy in differentially heated enclosures arise in several natural and industrial settings, whose understanding can be achieved via numerical simulations. Lattice Boltzmann (LB) methods are efficient kinetic computational approaches for coupled flow physics problems. In this study, we develop three-dimensional (3D) LB models based on central moments and multiple relaxation times for D3Q7 and D3Q15 lattices to solve the energy transport equations in a double distribution function approach. Their collision operators lead to a cascaded structure involving higher order terms resulting in improved stability. This is coupled to a central moment based LB flow solver with source terms. The new 3D cascaded LB models for the convective flows are first validated for natural convection of air driven thermally on two vertically opposite faces in a cubic cavity at different Rayleigh numbers against prior numerical and experimental data, which show good quantitative agreement. Then, the detailed structure of the 3D flow and thermal fields and the heat transfer rates at different Rayleigh numbers are analyzed and interpreted.

  15. Verifying three-dimensional skull model reconstruction using cranial index of symmetry.

    Directory of Open Access Journals (Sweden)

    Woon-Man Kung

    Full Text Available BACKGROUND: Difficulty exists in scalp adaptation for cranioplasty with customized computer-assisted design/manufacturing (CAD/CAM implant in situations of excessive wound tension and sub-cranioplasty dead space. To solve this clinical problem, the CAD/CAM technique should include algorithms to reconstruct a depressed contour to cover the skull defect. Satisfactory CAM-derived alloplastic implants are based on highly accurate three-dimensional (3-D CAD modeling. Thus, it is quite important to establish a symmetrically regular CAD/CAM reconstruction prior to depressing the contour. The purpose of this study is to verify the aesthetic outcomes of CAD models with regular contours using cranial index of symmetry (CIS. MATERIALS AND METHODS: From January 2011 to June 2012, decompressive craniectomy (DC was performed for 15 consecutive patients in our institute. 3-D CAD models of skull defects were reconstructed using commercial software. These models were checked in terms of symmetry by CIS scores. RESULTS: CIS scores of CAD reconstructions were 99.24±0.004% (range 98.47-99.84. CIS scores of these CAD models were statistically significantly greater than 95%, identical to 99.5%, but lower than 99.6% (p<0.001, p = 0.064, p = 0.021 respectively, Wilcoxon matched pairs signed rank test. These data evidenced the highly accurate symmetry of these CAD models with regular contours. CONCLUSIONS: CIS calculation is beneficial to assess aesthetic outcomes of CAD-reconstructed skulls in terms of cranial symmetry. This enables further accurate CAD models and CAM cranial implants with depressed contours, which are essential in patients with difficult scalp adaptation.

  16. Direct laser writing and geometrical analysis of scaffolds with designed pore architecture for three-dimensional cell culturing

    Science.gov (United States)

    Käpylä, Elli; Aydogan, Dogu Baran; Virjula, Sanni; Vanhatupa, Sari; Miettinen, Susanna; Hyttinen, Jari; Kellomäki, Minna

    2012-11-01

    Traditional scaffold fabrication methods used in tissue engineering enable only limited control over essential parameters such as porosity, pore size and pore interconnectivity. In this study, we designed and fabricated five different types of three-dimensionally interconnected, highly porous scaffolds with precise control over the scaffold characteristics. We used two-photon polymerization (2PP) with a commercial polymer-ceramic material (Ormocomp®) for scaffold fabrication. Also for the first time, we analyzed the 2PP fabrication accuracy with respect to scaffold design parameters. Our results showed that the porosity values decreased up to 13% compared to the design specifications due to the fabrication process and the shrinkage of the material. Finally, we showed that our scaffolds supported human adipose stem cell adhesion and proliferation in a six day culture. By precise tuning of scaffold parameters, our design and fabrication method provides a novel approach for studying the effect of scaffold architecture on cell behavior in vitro.

  17. Improved water resource management using three dimensional groundwater modelling for a highly complex environmental

    Science.gov (United States)

    Moeck, Christian; Affolter, Annette; Radny, Dirk; Auckenthaler, Adrian; Huggenberger, Peter; Schirmer, Mario

    2017-04-01

    Proper allocation and management of groundwater is an important and critical challenge under rising water demands of various environmental sectors but good groundwater quality is often limited because of urbanization and contamination of aquifers. Given the predictive capability of groundwater models, they are often the only viable means of providing input to water management decisions. However, modelling flow and transport processes can be difficult due to their unknown subsurface heterogeneity and typically unknown distribution of contaminants. As a result water resource management tasks are based on uncertain assumption on contaminants patterns and this uncertainty is typically not incorporated into the assessment of risks associated with different proposed management scenarios. A three-dimensional groundwater model was used to improve water resource management for a study area, where drinking water production is close to different former landfills and industrial areas. To avoid drinking water contamination, artificial groundwater recharge with surface water into the gravel aquifer is used to create a hydraulic barrier between contaminated sites and drinking water extraction wells. The model was used for simulating existing and proposed water management strategies as a tool to ensure the utmost security for drinking water. A systematic evaluation of the flow direction and magnitude between existing observation points using a newly developed three point estimation method for a large amount of scenarios was carried out. Due to the numerous observation points 32 triangles (three-points) were created which cover the entire area around the Hardwald. We demonstrated that systematically applying our developed methodology helps to identify important locations which are sensitive to changing boundary conditions and where additional protection is required without highly computational demanding transport modelling. The presented integrated approach using the flow direction

  18. Three-dimensional modeling of diesel engine intake flow, combustion and emissions-II

    Energy Technology Data Exchange (ETDEWEB)

    Reitz, R.D.; Rutland, C.J.

    1993-09-01

    A three-dimensional computer code, KIVA, is being modified to include state-of-the-art submodels for diesel engine flow and combustion. Improved and/or new submodels which have already been implemented and previously reported are: Wall heat transfer with unsteadiness and compressibility, laminar-turbulent characteristic time combustion with unburned HC and Zeldo`vich NO{sub x}, and spray/wall impingement with rebounding and sliding drops. Progress on the implementation of improved spray drop drag and drop breakup models, the formulation and testing of a multistep kinetics ignition model and preliminary soot modeling results are described in this report. In addition, the use of a block structured version of KIVA to model the intake flow process is described. A grid generation scheme has been developed for modeling realistic (complex) engine geometries, and computations have been made of intake flow in the ports and combustion chamber of a two-intake-valve engine. The research also involves the use of the code to assess the effects of subprocesses on diesel engine performance. The accuracy of the predictions is being tested by comparisons with engine experiments. To date, comparisons have been made with measured engine cylinder pressure, temperature and heat flux data, and the model results are in good agreement with the experiments. Work is in progress that will allow validation of in-cylinder flow and soot formation predictions. An engine test facility is described that is being used to provide the needed validation data. Test results have been obtained showing the effect of injection rate and split injections on engine performance and emissions.

  19. Modeling Vehicle Collision Angle in Traffic Crashes Based on Three-Dimensional Laser Scanning Data

    Directory of Open Access Journals (Sweden)

    Nengchao Lyu

    2017-02-01

    Full Text Available In road traffic accidents, the analysis of a vehicle’s collision angle plays a key role in identifying a traffic accident’s form and cause. However, because accurate estimation of vehicle collision angle involves many factors, it is difficult to accurately determine it in cases in which less physical evidence is available and there is a lack of monitoring. This paper establishes the mathematical relation model between collision angle, deformation, and normal vector in the collision region according to the equations of particle deformation and force in Hooke’s law of classical mechanics. At the same time, the surface reconstruction method suitable for a normal vector solution is studied. Finally, the estimation model of vehicle collision angle is presented. In order to verify the correctness of the model, verification of multi-angle collision experiments and sensitivity analysis of laser scanning precision for the angle have been carried out using three-dimensional (3D data obtained by a 3D laser scanner in the collision deformation zone. Under the conditions with which the model has been defined, validation results show that the collision angle is a result of the weighted synthesis of the normal vector of the collision point and the weight value is the deformation of the collision point corresponding to normal vectors. These conclusions prove the applicability of the model. The collision angle model proposed in this paper can be used as the theoretical basis for traffic accident identification and cause analysis. It can also be used as a theoretical reference for the study of the impact deformation of elastic materials.

  20. Fabrication of large size alginate beads for three-dimensional cell-cluster culture

    Science.gov (United States)

    Zhang, Zhengtao; Ruan, Meilin; Liu, Hongni; Cao, Yiping; He, Rongxiang

    2017-08-01

    We fabricated large size alginate beads using a simple microfluidic device under a co-axial injection regime. This device was made by PDMS casting with a mold formed by small diameter metal and polytetrafluorothylene tubes. Droplets of 2% sodium alginate were generated in soybean oil through the device and then cross-linked in a 2% CaCl2 solution, which was mixed tween80 with at a concentration of 0.4 to 40% (w/v). Our results showed that the morphology of the produced alginate beads strongly depends on the tween80 concentration. With the increase of concentration of tween80, the shape of the alginate beads varied from semi-spherical to tailed-spherical, due to the decrease of interface tension between oil and cross-link solution. To access the biocompatibility of the approach, MCF-7 cells were cultured with the alginate beads, showing the formation of cancer cells clusters which might be useful for future studies.

  1. Three-dimensional model of corotating streams in the solar wind 3. Magnetohydrodynamic streams

    International Nuclear Information System (INIS)

    Pizzo, V.J.

    1982-01-01

    The focus of this paper is two-fold: (1) to examine how the presence of the spiral magnetic field affects the evolution of interplanetary corotating solar wind streams, and (2) to ascertain the nature of secondary large-scale phenomena likely to be associated with streams having a pronounced three-dimensional (3-D) structure. The dynamics are presumed to be governed by the nonlinear polytropic, single-fluid, 3-D MHD equations. Solutions are obtained with an explicit, Eulerian, finite differences technique that makes use of a simple form of artificial diffusion for handling shocks. For smooth axisymmetric flows, the picture of magnetically induced meridional motions previously established by linear models requires only minor correction. In the case of broad 3-D streams input near the sun, inclusion of the magnetic field is found to retard the kinematic steepening at the stream front substantially but to produce little deviation from planar flow. For the more realistic case of initially sharply bounded streams, however, it becomes essential to account for magnetic effects in the formulation. Whether a full 3-D treatment is required depends upon the latitudinal geometry of the stream

  2. Three-dimensional Simulation and Prediction of Solenoid Valve Failure Mechanism Based on Finite Element Model

    Science.gov (United States)

    Li, Jianfeng; Xiao, Mingqing; Liang, Yajun; Tang, Xilang; Li, Chao

    2018-01-01

    The solenoid valve is a kind of basic automation component applied widely. It’s significant to analyze and predict its degradation failure mechanism to improve the reliability of solenoid valve and do research on prolonging life. In this paper, a three-dimensional finite element analysis model of solenoid valve is established based on ANSYS Workbench software. A sequential coupling method used to calculate temperature filed and mechanical stress field of solenoid valve is put forward. The simulation result shows the sequential coupling method can calculate and analyze temperature and stress distribution of solenoid valve accurately, which has been verified through the accelerated life test. Kalman filtering algorithm is introduced to the data processing, which can effectively reduce measuring deviation and restore more accurate data information. Based on different driving current, a kind of failure mechanism which can easily cause the degradation of coils is obtained and an optimization design scheme of electro-insulating rubbers is also proposed. The high temperature generated by driving current and the thermal stress resulting from thermal expansion can easily cause the degradation of coil wires, which will decline the electrical resistance of coils and result in the eventual failure of solenoid valve. The method of finite element analysis can be applied to fault diagnosis and prognostic of various solenoid valves and improve the reliability of solenoid valve’s health management.

  3. Three dimensional modeling of pulverized coal combustion in a 600 MW corner fired boiler

    Science.gov (United States)

    Dal-Secco, Sandro

    2000-12-01

    The three-dimensional code ESTET developed at the LNH has been used to predict the reactive flow in a 600 MW coal fired boiler. Assuming a no-slip condition between the gas and the coal, the equations for a gas-particle mixture can be written. The pulverized coal particle size distribution is represented by a discrete number of particle size groups determined by the measured fineness distribution. The combustion models taking into account the pyrolysis of the particle and the heterogeneous combustion of char have been validated using intensive measurements performed on the 600 MW utility boiler. Heat fluxes were measured along the walls of the furnace and satisfactory agreement between computation and measurements has been achieved in terms of maximum flux location and heat flux intensity. Local measurements of velocities using LDV probe, gas temperature and gas species concentrations were performed in the vicinity of one burner and compared with the computed variables. Again we have observed a good agreement between the computations and the measurements in terms of jet penetration, temperature distribution, oxygen concentration and ash content.

  4. Numerical investigation of three-dimensional pupil model impact on the relative illumination in panomorph lenses

    Science.gov (United States)

    Zhuang, Zhenfeng; Thibault, Simon

    2017-11-01

    One of the key issues in conventional wide-angle lenses is the well-known cosine-fourth power law problem causing the illumination falloff at its image space. This paper explores methods of improving illumination in the image space in panomorph lenses. By tracing skew rays within the defined field of view and pupil diameter, we obtained the actual position of the three-dimensional pupil model of the entrance pupil (EP) and exit pupil (XP). Based on the law of irradiance transport conservation, the relation between the area of the EP projection and illumination in the image space is derived to investigate the factors affecting the illumination on the peripheral field. A panomorph lens has been optimized as an example by providing a self-defined operation in the optimization process. The characteristic of the EP and XP in panomorph lenses is qualitatively analyzed. Compared with the conventional design method, the proposed design strategy can enhance the illumination with and without polarized light based on qualitatively evaluating the area of projected EP. It is demonstrated that this method enables the enhancement of the illumination without additional film coating.

  5. Three-dimensional wave-induced current model equations and radiation stresses

    Science.gov (United States)

    Xia, Hua-yong

    2017-08-01

    After the approach by Mellor (2003, 2008), the present paper reports on a repeated effort to derive the equations for three-dimensional wave-induced current. Via the vertical momentum equation and a proper coordinate transformation, the phase-averaged wave dynamic pressure is well treated, and a continuous and depth-dependent radiation stress tensor, rather than the controversial delta Dirac function at the surface shown in Mellor (2008), is provided. Besides, a phase-averaged vertical momentum flux over a sloping bottom is introduced. All the inconsistencies in Mellor (2003, 2008), pointed out by Ardhuin et al. (2008) and Bennis and Ardhuin (2011), are overcome in the presently revised equations. In a test case with a sloping sea bed, as shown in Ardhuin et al. (2008), the wave-driving forces derived in the present equations are in good balance, and no spurious vertical circulation occurs outside the surf zone, indicating that Airy's wave theory and the approach of Mellor (2003, 2008) are applicable for the derivation of the wave-induced current model.

  6. Application of three dimensional finite element modeling for the simulation of machining processes

    International Nuclear Information System (INIS)

    Fischer, C.E.; Wu, W.T.; Chigurupati, P.; Jinn, J.T.

    2004-01-01

    For many years, metal cutting simulations have been performed using two dimensional approximations of the actual process. Factors such as chip morphology, cutting force, temperature, and tool wear can all be predicted on the computer. However, two dimensional simulation is limited to processes which are orthogonal, or which can be closely approximated as orthogonal.Advances in finite element technology, coupled with continuing improvement in the availability of low cost, high performance computer hardware, have made the three dimensional simulation of a large variety of metal cutting processes practical. Specific improvements include efficient FEM solvers, and robust adaptive remeshing. As researchers continue to gain an improved understanding of wear, material representation, tool coatings, fracture, and other such phenomena, the machining simulation system also must adapt to incorporate these evolving models.To demonstrate the capabilities of the 3D simulation system, a variety of drilling, milling, and turning processes have been simulated and will be presented in this paper. Issues related to computation time and simulation accuracy will also be addressed

  7. Three-Dimensional (3D Printing of Polymer-Metal Hybrid Materials by Fused Deposition Modeling

    Directory of Open Access Journals (Sweden)

    Susanna Fafenrot

    2017-10-01

    Full Text Available Fused deposition modeling (FDM is a three-dimensional (3D printing technology that is usually performed with polymers that are molten in a printer nozzle and placed line by line on the printing bed or the previous layer, respectively. Nowadays, hybrid materials combining polymers with functional materials are also commercially available. Especially combinations of polymers with metal particles result in printed objects with interesting optical and mechanical properties. The mechanical properties of objects printed with two of these metal-polymer blends were compared to common poly (lactide acid (PLA printed objects. Tensile tests and bending tests show that hybrid materials mostly containing bronze have significantly reduced mechanical properties. Tensile strengths of the 3D-printed objects were unexpectedly nearly identical with those of the original filaments, indicating sufficient quality of the printing process. Our investigations show that while FDM printing allows for producing objects with mechanical properties similar to the original materials, metal-polymer blends cannot be used for the rapid manufacturing of objects necessitating mechanical strength.

  8. Three-Dimensional (3D) Printing of Polymer-Metal Hybrid Materials by Fused Deposition Modeling.

    Science.gov (United States)

    Fafenrot, Susanna; Grimmelsmann, Nils; Wortmann, Martin; Ehrmann, Andrea

    2017-10-19

    Fused deposition modeling (FDM) is a three-dimensional (3D) printing technology that is usually performed with polymers that are molten in a printer nozzle and placed line by line on the printing bed or the previous layer, respectively. Nowadays, hybrid materials combining polymers with functional materials are also commercially available. Especially combinations of polymers with metal particles result in printed objects with interesting optical and mechanical properties. The mechanical properties of objects printed with two of these metal-polymer blends were compared to common poly (lactide acid) (PLA) printed objects. Tensile tests and bending tests show that hybrid materials mostly containing bronze have significantly reduced mechanical properties. Tensile strengths of the 3D-printed objects were unexpectedly nearly identical with those of the original filaments, indicating sufficient quality of the printing process. Our investigations show that while FDM printing allows for producing objects with mechanical properties similar to the original materials, metal-polymer blends cannot be used for the rapid manufacturing of objects necessitating mechanical strength.

  9. Three-dimensional modeling of glucose-6-phosphate dehydrogenase-deficient variants from German ancestry.

    Directory of Open Access Journals (Sweden)

    Farooq Kiani

    2007-07-01

    Full Text Available Loss of function of dimeric glucose-6-phosphate dehydrogenase (G6PD represents the most common inborn error of metabolism throughout the world affecting an estimated 400 million people. In Germany, this enzymopathy is very rare.On the basis of G6PD crystal structures, we have analyzed six G6PD variants of German ancestry by three-dimensional modeling. All mutations present in the German population are either close to one of the three G6P or NADP(+ units or to the interface of the two monomers. Two of the three mutated amino acids of G6PD Vancouver are closer to the binding site of NADP(+. The G6PD Aachen mutation is also closer to the second NADP(+ unit. The G6PD Wayne mutation is closer to the G6P binding region. These mutations may affect the binding of G6P and NADP(+ units. Three mutations, i.e. G6PD Munich, G6PD Riverside and G6PD Gastonia, lie closer to the interface of the two monomers. These may also affect the interface of two monomers.None of these G6PD variants share mutations with the common G6PD variants known from the Mediterranean, Near East, or Africa indicating that they have developed independently. The G6PD variants have been compared with mutants from other populations and the implications for survival of G6PD variants from natural selection have been discussed.

  10. Quantitative three-dimensional modeling of zeotile through discrete electron tomography.

    Science.gov (United States)

    Bals, Sara; Batenburg, K Joost; Liang, Duoduo; Lebedev, Oleg; Van Tendeloo, Gustaaf; Aerts, Alexander; Martens, Johan A; Kirschhock, Christine E A

    2009-04-08

    Discrete electron tomography is a new approach for three-dimensional reconstruction of nanoscale objects. The technique exploits prior knowledge of the object to be reconstructed, which results in an improvement of the quality of the reconstructions. Through the combination of conventional transmission electron microscopy and discrete electron tomography with a model-based approach, quantitative structure determination becomes possible. In the present work, this approach is used to unravel the building scheme of Zeotile-4, a silica material with two levels of structural order. The layer sequence of slab-shaped building units could be identified. Successive layers were found to be related by a rotation of 120 degrees, resulting in a hexagonal space group. The Zeotile-4 material is a demonstration of the concept of successive structuring of silica at two levels. At the first level, the colloid chemical properties of Silicalite-1 precursors are exploited to create building units with a slablike geometry. At the second level, the slablike units are tiled using a triblock copolymer to serve as a mesoscale structuring agent.

  11. Three-Dimensional Finite Element Modeling of Thermomechanical Problems in Functionally Graded Hydroxyapatite/Titanium Plate

    Directory of Open Access Journals (Sweden)

    S. N. S. Jamaludin

    2014-01-01

    Full Text Available The composition of hydroxyapatite (HA as the ceramic phase and titanium (Ti as the metallic phase in HA/Ti functionally graded materials (FGMs shows an excellent combination of high biocompatibility and high mechanical properties in a structure. Because the gradation of these properties is one of the factors that affects the response of the functionally graded (FG plates, this paper is presented to show the domination of the grading parameter on the displacement and stress distribution of the plates. A three-dimensional (3D thermomechanical model of a 20-node brick quadratic element is used in the simulation of the thermoelastic behaviors of HA/Ti FG plates subjected to constant and functional thermal, mechanical, and thermomechanical loadings. The convergence properties of the present results are examined thoroughly in order to assess the accuracy of the theory applied and to compare them with the established research results. Instead of the grading parameter, this study reveals that the loading field distribution can be another factor that reflects the thermoelastic properties of the HA/Ti FG plates. The FG structure is found to be able to withstand the thermal stresses while preserving the high toughness properties and thus shows its ability to operate at high temperature.

  12. Automated recovery of three-dimensional models of plant shoots from multiple color images.

    Science.gov (United States)

    Pound, Michael P; French, Andrew P; Murchie, Erik H; Pridmore, Tony P

    2014-12-01

    Increased adoption of the systems approach to biological research has focused attention on the use of quantitative models of biological objects. This includes a need for realistic three-dimensional (3D) representations of plant shoots for quantification and modeling. Previous limitations in single-view or multiple-view stereo algorithms have led to a reliance on volumetric methods or expensive hardware to record plant structure. We present a fully automatic approach to image-based 3D plant reconstruction that can be achieved using a single low-cost camera. The reconstructed plants are represented as a series of small planar sections that together model the more complex architecture of the leaf surfaces. The boundary of each leaf patch is refined using the level-set method, optimizing the model based on image information, curvature constraints, and the position of neighboring surfaces. The reconstruction process makes few assumptions about the nature of the plant material being reconstructed and, as such, is applicable to a wide variety of plant species and topologies and can be extended to canopy-scale imaging. We demonstrate the effectiveness of our approach on data sets of wheat (Triticum aestivum) and rice (Oryza sativa) plants as well as a unique virtual data set that allows us to compute quantitative measures of reconstruction accuracy. The output is a 3D mesh structure that is suitable for modeling applications in a format that can be imported in the majority of 3D graphics and software packages. © 2014 American Society of Plant Biologists. All Rights Reserved.

  13. Three-dimensional Kinetic Pulsar Magnetosphere Models: Connecting to Gamma-Ray Observations

    Science.gov (United States)

    Kalapotharakos, Constantinos; Brambilla, Gabriele; Timokhin, Andrey; Harding, Alice K.; Kazanas, Demosthenes

    2018-04-01

    We present three-dimensional (3D) global kinetic pulsar magnetosphere models, where the charged particle trajectories and the corresponding electromagnetic fields are treated self-consistently. For our study, we have developed a Cartesian 3D relativistic particle-in-cell code that incorporates radiation reaction forces. We describe our code and discuss the related technical issues, treatments, and assumptions. Injecting particles up to large distances in the magnetosphere, we apply arbitrarily low to high particle injection rates, and obtain an entire spectrum of solutions from close to the vacuum-retarded dipole to close to the force-free (FF) solution, respectively. For high particle injection rates (close to FF solutions), significant accelerating electric field components are confined only near the equatorial current sheet outside the light cylinder. A judicious interpretation of our models allows the particle emission to be calculated, and consequently, the corresponding realistic high-energy sky maps and spectra to be derived. Using model parameters that cover the entire range of spin-down powers of Fermi young and millisecond pulsars, we compare the corresponding model γ-ray light curves, cutoff energies, and total γ-ray luminosities with those observed by Fermi to discover a dependence of the particle injection rate, { \\mathcal F }, on the spin-down power, \\dot{{ \\mathcal E }}, indicating an increase of { \\mathcal F } with \\dot{{ \\mathcal E }}. Our models, guided by Fermi observations, provide field structures and particle distributions that are not only consistent with each other but also able to reproduce a broad range of the observed γ-ray phenomenologies of both young and millisecond pulsars.

  14. IPRT polarized radiative transfer model intercomparison project - Three-dimensional test cases (phase B)

    Science.gov (United States)

    Emde, Claudia; Barlakas, Vasileios; Cornet, Céline; Evans, Frank; Wang, Zhen; Labonotte, Laurent C.; Macke, Andreas; Mayer, Bernhard; Wendisch, Manfred

    2018-04-01

    Initially unpolarized solar radiation becomes polarized by scattering in the Earth's atmosphere. In particular molecular scattering (Rayleigh scattering) polarizes electromagnetic radiation, but also scattering of radiation at aerosols, cloud droplets (Mie scattering) and ice crystals polarizes. Each atmospheric constituent produces a characteristic polarization signal, thus spectro-polarimetric measurements are frequently employed for remote sensing of aerosol and cloud properties. Retrieval algorithms require efficient radiative transfer models. Usually, these apply the plane-parallel approximation (PPA), assuming that the atmosphere consists of horizontally homogeneous layers. This allows to solve the vector radiative transfer equation (VRTE) efficiently. For remote sensing applications, the radiance is considered constant over the instantaneous field-of-view of the instrument and each sensor element is treated independently in plane-parallel approximation, neglecting horizontal radiation transport between adjacent pixels (Independent Pixel Approximation, IPA). In order to estimate the errors due to the IPA approximation, three-dimensional (3D) vector radiative transfer models are required. So far, only a few such models exist. Therefore, the International Polarized Radiative Transfer (IPRT) working group of the International Radiation Commission (IRC) has initiated a model intercomparison project in order to provide benchmark results for polarized radiative transfer. The group has already performed an intercomparison for one-dimensional (1D) multi-layer test cases [phase A, 1]. This paper presents the continuation of the intercomparison project (phase B) for 2D and 3D test cases: a step cloud, a cubic cloud, and a more realistic scenario including a 3D cloud field generated by a Large Eddy Simulation (LES) model and typical background aerosols. The commonly established benchmark results for 3D polarized radiative transfer are available at the IPRT website (http

  15. SU-E-T-754: Three-Dimensional Patient Modeling Using Photogrammetry for Collision Avoidance

    Energy Technology Data Exchange (ETDEWEB)

    Popple, R; Cardan, R [Univ Alabama Birmingham, Birmingham, AL (United States)

    2015-06-15

    Purpose: To evaluate photogrammetry for creating a three-dimensional patient model. Methods: A mannequin was configured on the couch of a CT scanner to simulate a patient setup using an indexed positioning device. A CT fiducial was placed on the indexed CT table-overlay at the reference index position. Two dimensional photogrammetry targets were placed on the table in known positions. A digital SLR camera was used to obtain 27 images from different positions around the CT table. The images were imported into a commercial photogrammetry package and a 3D model constructed. Each photogrammetry target was identified on 2 to 5 images. The CT DICOM metadata and the position of the CT fiducial were used to calculate the coordinates of the photogrammetry targets in the CT image frame of reference. The coordinates were transferred to the photogrammetry software to orient the 3D model. The mannequin setup was transferred to the treatment couch of a linear accelerator and positioned at isocenter using in-room lasers. The treatment couch coordinates were noted and compared with prediction. The collision free regions were measured over the full range of gantry and table motion and were compared with predictions obtained using a general purpose polygon interference algorithm. Results: The reconstructed 3D model consisted of 180000 triangles. The difference between the predicted and measured couch positions were 5 mm, 1 mm, and 1 mm for longitudinal, lateral, and vertical, respectively. The collision prediction tested 64620 gantry table combinations in 11.1 seconds. The accuracy was 96.5%, with false positive and negative results occurring at the boundaries of the collision space. Conclusion: Photogrammetry can be used as a tool for collision avoidance during treatment planning. The results indicate that a buffer zone is necessary to avoid false negatives at the boundary of the collision-free zone. Testing with human patients is underway. Research partially supported by a grant

  16. Three-dimensional stochastic model of actin–myosin binding in the sarcomere lattice

    Energy Technology Data Exchange (ETDEWEB)

    Mijailovich, Srboljub M.; Kayser-Herold, Oliver; Stojanovic, Boban; Nedic, Djordje; Irving, Thomas C.; Geeves, MA (Harvard); (IIT); (U. Kent); (Kragujevac)

    2016-11-18

    The effect of molecule tethering in three-dimensional (3-D) space on bimolecular binding kinetics is rarely addressed and only occasionally incorporated into models of cell motility. The simplest system that can quantitatively determine this effect is the 3-D sarcomere lattice of the striated muscle, where tethered myosin in thick filaments can only bind to a relatively small number of available sites on the actin filament, positioned within a limited range of thermal movement of the myosin head. Here we implement spatially explicit actomyosin interactions into the multiscale Monte Carlo platform MUSICO, specifically defining how geometrical constraints on tethered myosins can modulate state transition rates in the actomyosin cycle. The simulations provide the distribution of myosin bound to sites on actin, ensure conservation of the number of interacting myosins and actin monomers, and most importantly, the departure in behavior of tethered myosin molecules from unconstrained myosin interactions with actin. In addition, MUSICO determines the number of cross-bridges in each actomyosin cycle state, the force and number of attached cross-bridges per myosin filament, the range of cross-bridge forces and accounts for energy consumption. At the macroscopic scale, MUSICO simulations show large differences in predicted force-velocity curves and in the response during early force recovery phase after a step change in length comparing to the two simplest mass action kinetic models. The origin of these differences is rooted in the different fluxes of myosin binding and corresponding instantaneous cross-bridge distributions and quantitatively reflects a major flaw of the mathematical description in all mass action kinetic models. Consequently, this new approach shows that accurate recapitulation of experimental data requires significantly different binding rates, number of actomyosin states, and cross-bridge elasticity than typically used in mass action kinetic models to

  17. Establishment of virtual three-dimensional model for intravascular interventional devices and its clinical value

    International Nuclear Information System (INIS)

    Wei Xin; Zhong Liming; Xie Xiaodong; Wang Chaohua; You Jian; Hu Hong; Hu Kongqiong; Zhao Xiaowei

    2012-01-01

    Objective: To explore virtual three-dimensional (3D) model for intravascular interventional devices,the method of preoperative simulation and its value in clinical work. Methods: The virtual models including catheter, guide wire, stent and coil were established by using the 3D moulding software of 3D Studio MAX R3. The interventional preoperative simulation was performed on personal computer including 21 patients of cerebral aneurysm embolization (anterior communicating artery 5, posterior communicating artery 10,middle cerebral artery 3, internal carotid artery 2, and vertebral artery 1), during interventional procedures, the surgeon relied on the simulation results for plastic micro-guide wire, catheter and the release of micro-coils and stents. Results: (1) All the virtual instruments and real instruments had similar shape,the overall tine for constructing virtual model was about 20 hours. The preoperative simulation took 50 to 80 minutes. (2) The simulation result of catheter insertion in the 18 cases had relevant value to guide micro-catheter, molding micro-guide wire tip, and shortened the operating time. For embolization, the simulation results of filling coil and releasing stent were similar to surgical results in 76% of the patients (16/21). (3)For teaching and training, 93% (38/41) of doctors in training believed that preoperative simulation facilitated the understanding of surgery. Conclusions: The method of virtual model of intravascular interventional devices was reliable. The preoperative simulation results could be used to guide practical clinical operation with relatively high degree of similarity, and could play a role in promoting researches on interventional virtual operations. (authors)

  18. Oxygen tension and formation of cervical-like tissue in two-dimensional and three-dimensional culture.

    Science.gov (United States)

    House, Michael; Daniel, Jennifer; Elstad, Kirigin; Socrate, Simona; Kaplan, David L

    2012-03-01

    Cervical dysfunction contributes to a significant number of preterm births and is a common cause of morbidity and mortality in newborn infants. Cervical dysfunction is related to weakened load bearing properties of the collagen-rich cervical stroma. However, the mechanisms responsible for cervical collagen changes during pregnancy are not well defined. It is known that blood flow and oxygen tension significantly increase in reproductive tissues during pregnancy. To examine the effect of oxygen tension, a key mediator of tissue homeostasis, on the formation of cervical-like tissue in vitro, we grew primary human cervical cells in both two-dimensional (2D) and three-dimensional (3D) culture systems at 5% and 20% oxygen. Immunofluorescence studies revealed a stable fibroblast phenotype across six passages in all subjects studied (n=5). In 2D culture for 2 weeks, 20% oxygen was associated with significantly increased collagen gene expression (p<0.01), increased tissue wet weight (p<0.01), and increased collagen concentration (p=0.046). 3D cultures could be followed for significantly longer time frames than 2D cultures (12 weeks vs. 2 weeks). In contrast to 2D cultures, 20% oxygen in 3D cultures was associated with decreased collagen concentration (p<0.01) and unchanged collagen gene expression, which is similar to cervical collagen changes seen during pregnancy. We infer that 3D culture is more relevant for studying cervical collagen changes in vitro. The data suggest that increased oxygen tension may be related to significant cervical collagen changes seen in pregnancy.

  19. Utilizing Fibrin-Alginate and Matrigel-Alginate for Mouse Follicle Development in Three-Dimensional Culture Systems.

    Science.gov (United States)

    Sadr, Seyedeh Zeynab; Fatehi, Roya; Maroufizadeh, Saman; Amorim, Christiani Andrade; Ebrahimi, Bita

    2018-01-24

    In vitro culture of ovarian follicles is a new technique in reproductive technology, which helps in understanding the process of folliculogenesis. The in vitro culture of follicles could be carried out using three-dimensional (3D) natural scaffolds that mimic the ovarian tissue stroma. Selection of the right matrix and culture media in these scaffolds could increase the survival and maturation of the follicles. In this work, the applicability of matrigel-alginate (MA) and fibrin-alginate (FA) 3D scaffolds for folliculogenesis was assessed. The ovaries of 13-day-old Naval Medical Research Institute (NMRI) mice were isolated and distributed into control and vitrification groups. Preantral follicles (mean diameter: 120-140 μm) were mechanically isolated from control and vitrified-warmed ovaries, encapsulated in MA or FA scaffold and cultured for 12 days. Follicle survival, growth, maturation, and quantitative expression of oocyte maturation genes (Gdf9, Bmp15, Fgf8, KitL, Kit, and Amh) and proteins (GDF9 and BMP15) were assessed. Survival rate of culture preantral follicles in control groups was found to be significantly higher than vitrified follicles. Antrum formation was similar in all groups. Follicle diameters were significantly increased in all groups during culture period. A decreasing pattern of gene expression was seen for all genes in all groups. This trend was verified through evaluation of protein expression, during which there was strong staining in antral follicles from all groups in the last day of in vitro culture. The better survival and maturation rate of follicles in the MA compared to FA scaffold indicates that the MA matrix, being rich in extracellular matrix components, could mimic the ovarian condition better and presents a good environment for follicle development.

  20. CHANGE: A numerical model for three-dimensional modelling of channelized flow in rock: Theory and design

    International Nuclear Information System (INIS)

    Billaux, D.; Long, J.C.S.; Peterson, J.E. Jr.

    1990-03-01

    A model for channelized flow in three-dimensional, random networks of fractures has been developed. In this model, the fractures are disc-shaped discontinuities in an impermeable matrix. Within each fracture, flow occurs only in a network of random channels. The channels in each fracture can be generated independently with random distributions of length, conductivity, and orientation in the fracture plane. Boundary conditions are specified on the sides of a ''flow region,'' and at the intersections of the channels with interior ''holes'' specified by the user to simulate boreholes or drifts. This code is part of a set of programs used to generate two-dimensional or three-dimensional random fracture networks, plot them, compute flow through them and analyze the results. 8 refs., 13 figs

  1. Three-dimensional modelling of the human carotid artery using the lattice Boltzmann method: I. Model and velocity analysis

    Energy Technology Data Exchange (ETDEWEB)

    Boyd, J [Cardiovascular Research Group Physics, University of New England, Armidale, NSW 2351 (Australia); Buick, J M [Department of Mechanical and Design Engineering, University of Portsmouth, Anglesea Building, Anglesea Road, Portsmouth PO1 3DJ (United Kingdom)

    2008-10-21

    Numerical modelling is a powerful tool in the investigation of human blood flow and arterial diseases such as atherosclerosis. It is known that near wall velocity and shear are important in the pathogenesis and progression of atherosclerosis. In this paper results for a simulation of blood flow in a three-dimensional carotid artery geometry using the lattice Boltzmann method are presented. The velocity fields in the body of the fluid are analysed at six times of interest during a physiologically accurate velocity waveform. It is found that the three-dimensional model agrees well with previous literature results for carotid artery flow. Regions of low near wall velocity and circulatory flow are observed near the outer wall of the bifurcation and in the lower regions of the external carotid artery, which are regions that are typically prone to atherosclerosis.

  2. Three-dimensional modelling of the human carotid artery using the lattice Boltzmann method: I. Model and velocity analysis

    International Nuclear Information System (INIS)

    Boyd, J; Buick, J M

    2008-01-01

    Numerical modelling is a powerful tool in the investigation of human blood flow and arterial diseases such as atherosclerosis. It is known that near wall velocity and shear are important in the pathogenesis and progression of atherosclerosis. In this paper results for a simulation of blood flow in a three-dimensional carotid artery geometry using the lattice Boltzmann method are presented. The velocity fields in the body of the fluid are analysed at six times of interest during a physiologically accurate velocity waveform. It is found that the three-dimensional model agrees well with previous literature results for carotid artery flow. Regions of low near wall velocity and circulatory flow are observed near the outer wall of the bifurcation and in the lower regions of the external carotid artery, which are regions that are typically prone to atherosclerosis.

  3. Three-dimensional modeling and simulation of asphalt concrete mixtures based on X-ray CT microstructure images

    Directory of Open Access Journals (Sweden)

    Hainian Wang

    2014-02-01

    Full Text Available X-ray CT (computed tomography was used to scan asphalt mixture specimen to obtain high resolution continuous cross-section images and the meso-structure. According to the theory of three-dimensional (3D reconstruction, the 3D reconstruction algorithm was investigated in this paper. The key to the reconstruction technique is the acquisition of the voxel positions and the relationship between the pixel element and node. Three-dimensional numerical model of asphalt mixture specimen was created by a self-developed program. A splitting test was conducted to predict the stress distributions of the asphalt mixture and verify the rationality of the 3D model.

  4. Monitoring Prostate Tumor Growth in an Orthotopic Mouse Model Using Three-Dimensional Ultrasound Imaging Technique

    Directory of Open Access Journals (Sweden)

    Jie Ni

    2016-02-01

    Full Text Available Prostate cancer (CaP is the most commonly diagnosed and the second leading cause of death from cancer in males in USA. Prostate orthotopic mouse model has been widely used to study human CaP in preclinical settings. Measurement of changes in tumor size obtained from noninvasive diagnostic images is a standard method for monitoring responses to anticancer modalities. This article reports for the first time the usage of a three-dimensional (3D ultrasound system equipped with photoacoustic (PA imaging in monitoring longitudinal prostate tumor growth in a PC-3 orthotopic NODSCID mouse model (n = 8. Two-dimensional and 3D modes of ultrasound show great ability in accurately depicting the size and shape of prostate tumors. PA function on two-dimensional and 3D images showed average oxygen saturation and average hemoglobin concentration of the tumor. Results showed a good fit in representative exponential tumor growth curves (n = 3; r2 = 0.948, 0.955, and 0.953, respectively and a good correlation of tumor volume measurements performed in vivo with autopsy (n = 8, r = 0.95, P < .001. The application of 3D ultrasound imaging proved to be a useful imaging modality in monitoring tumor growth in an orthotopic mouse model, with advantages such as high contrast, uncomplicated protocols, economical equipment, and nonharmfulness to animals. PA mode also enabled display of blood oxygenation surrounding the tumor and tumor vasculature and angiogenesis, making 3D ultrasound imaging an ideal tool for preclinical cancer research.

  5. Visualizing Three-dimensional Slab Geometries with ShowEarthModel

    Science.gov (United States)

    Chang, B.; Jadamec, M. A.; Fischer, K. M.; Kreylos, O.; Yikilmaz, M. B.

    2017-12-01

    Seismic data that characterize the morphology of modern subducted slabs on Earth suggest that a two-dimensional paradigm is no longer adequate to describe the subduction process. Here we demonstrate the effect of data exploration of three-dimensional (3D) global slab geometries with the open source program ShowEarthModel. ShowEarthModel was designed specifically to support data exploration, by focusing on interactivity and real-time response using the Vrui toolkit. Sixteen movies are presented that explore the 3D complexity of modern subduction zones on Earth. The first movie provides a guided tour through the Earth's major subduction zones, comparing the global slab geometry data sets of Gudmundsson and Sambridge (1998), Syracuse and Abers (2006), and Hayes et al. (2012). Fifteen regional movies explore the individual subduction zones and regions intersecting slabs, using the Hayes et al. (2012) slab geometry models where available and the Engdahl and Villasenor (2002) global earthquake data set. Viewing the subduction zones in this way provides an improved conceptualization of the 3D morphology within a given subduction zone as well as the 3D spatial relations between the intersecting slabs. This approach provides a powerful tool for rendering earth properties and broadening capabilities in both Earth Science research and education by allowing for whole earth visualization. The 3D characterization of global slab geometries is placed in the context of 3D slab-driven mantle flow and observations of shear wave splitting in subduction zones. These visualizations contribute to the paradigm shift from a 2D to 3D subduction framework by facilitating the conceptualization of the modern subduction system on Earth in 3D space.

  6. A three-dimensional multiscale model for gas exchange in fruit.

    Science.gov (United States)

    Ho, Quang Tri; Verboven, Pieter; Verlinden, Bert E; Herremans, Els; Wevers, Martine; Carmeliet, Jan; Nicolaï, Bart M

    2011-03-01

    Respiration of bulky plant organs such as roots, tubers, stems, seeds, and fruit depends very much on oxygen (O2) availability and often follows a Michaelis-Menten-like response. A multiscale model is presented to calculate gas exchange in plants using the microscale geometry of the tissue, or vice versa, local concentrations in the cells from macroscopic gas concentration profiles. This approach provides a computationally feasible and accurate analysis of cell metabolism in any plant organ during hypoxia and anoxia. The predicted O2 and carbon dioxide (CO2) partial pressure profiles compared very well with experimental data, thereby validating the multiscale model. The important microscale geometrical features are the shape, size, and three-dimensional connectivity of cells and air spaces. It was demonstrated that the gas-exchange properties of the cell wall and cell membrane have little effect on the cellular gas exchange of apple (Malus×domestica) parenchyma tissue. The analysis clearly confirmed that cells are an additional route for CO2 transport, while for O2 the intercellular spaces are the main diffusion route. The simulation results also showed that the local gas concentration gradients were steeper in the cells than in the surrounding air spaces. Therefore, to analyze the cellular metabolism under hypoxic and anoxic conditions, the microscale model is required to calculate the correct intracellular concentrations. Understanding the O2 response of plants and plant organs thus not only requires knowledge of external conditions, dimensions, gas-exchange properties of the tissues, and cellular respiration kinetics but also of microstructure.

  7. A Three-Dimensional Multiscale Model for Gas Exchange in Fruit1[C][W][OA

    Science.gov (United States)

    Ho, Quang Tri; Verboven, Pieter; Verlinden, Bert E.; Herremans, Els; Wevers, Martine; Carmeliet, Jan; Nicolaï, Bart M.

    2011-01-01

    Respiration of bulky plant organs such as roots, tubers, stems, seeds, and fruit depends very much on oxygen (O2) availability and often follows a Michaelis-Menten-like response. A multiscale model is presented to calculate gas exchange in plants using the microscale geometry of the tissue, or vice versa, local concentrations in the cells from macroscopic gas concentration profiles. This approach provides a computationally feasible and accurate analysis of cell metabolism in any plant organ during hypoxia and anoxia. The predicted O2 and carbon dioxide (CO2) partial pressure profiles compared very well with experimental data, thereby validating the multiscale model. The important microscale geometrical features are the shape, size, and three-dimensional connectivity of cells and air spaces. It was demonstrated that the gas-exchange properties of the cell wall and cell membrane have little effect on the cellular gas exchange of apple (Malus × domestica) parenchyma tissue. The analysis clearly confirmed that cells are an additional route for CO2 transport, while for O2 the intercellular spaces are the main diffusion route. The simulation results also showed that the local gas concentration gradients were steeper in the cells than in the surrounding air spaces. Therefore, to analyze the cellular metabolism under hypoxic and anoxic conditions, the microscale model is required to calculate the correct intracellular concentrations. Understanding the O2 response of plants and plant organs thus not only requires knowledge of external conditions, dimensions, gas-exchange properties of the tissues, and cellular respiration kinetics but also of microstructure. PMID:21224337

  8. Three-dimensional modeling of metabolic species transport in the cornea with a hydrogel intrastromal inlay.

    Science.gov (United States)

    Pinsky, Peter M

    2014-05-15

    Intrastromal inlays for refractive correction of presbyopia are being adopted into clinical practice. An important concern is the effect of the inlay on the long-term health of the cornea due to disturbances in the concentration profiles of metabolic species. A three-dimensional metabolic model for the cornea is employed to investigate oxygen, glucose, and lactate ion transport in the cornea and to estimate changes in species concentrations induced by the introduction of a hydrogel inlay. A reaction-diffusion metabolic model, appropriate for highly oxygen-permeable hydrogel inlays, is used to describe cellular consumption of oxygen and glucose and production of lactic acid. A three-layer corneal geometry (epithelium, stroma, endothelium) is employed with a hydrogel inlay placed under a lamellar flap. The model is solved numerically by the finite element method. For a commercially available hydrogel material with a relative inlay diffusivity of 43.5%, maximum glucose depletion and lactate ion accumulation occur anterior to the inlay and both are less than 3%. Below 20% relative diffusivity, glucose depletion and lactate ion accumulation increase exponentially. Glucose depletion increases slightly with increasing depth of inlay placement. The flux of metabolic species is modified by an inlay, depending on the inlay relative diffusivity. For commercially available hydrogel materials and a typical inlay design, predicted changes in species concentrations are small when compared to the variation of concentrations across the normal cornea. In general, glucose depletion and lactate ion accumulation are highly sensitive to inlay diffusivity and somewhat insensitive to inlay depth. Copyright 2014 The Association for Research in Vision and Ophthalmology, Inc.

  9. Human neural stem cell-derived cultures in three-dimensional substrates form spontaneously functional neuronal networks.

    Science.gov (United States)

    Smith, Imogen; Silveirinha, Vasco; Stein, Jason L; de la Torre-Ubieta, Luis; Farrimond, Jonathan A; Williamson, Elizabeth M; Whalley, Benjamin J

    2017-04-01

    Differentiated human neural stem cells were cultured in an inert three-dimensional (3D) scaffold and, unlike two-dimensional (2D) but otherwise comparable monolayer cultures, formed spontaneously active, functional neuronal networks that responded reproducibly and predictably to conventional pharmacological treatments to reveal functional, glutamatergic synapses. Immunocytochemical and electron microscopy analysis revealed a neuronal and glial population, where markers of neuronal maturity were observed in the former. Oligonucleotide microarray analysis revealed substantial differences in gene expression conferred by culturing in a 3D vs a 2D environment. Notable and numerous differences were seen in genes coding for neuronal function, the extracellular matrix and cytoskeleton. In addition to producing functional networks, differentiated human neural stem cells grown in inert scaffolds offer several significant advantages over conventional 2D monolayers. These advantages include cost savings and improved physiological relevance, which make them better suited for use in the pharmacological and toxicological assays required for development of stem cell-based treatments and the reduction of animal use in medical research. Copyright © 2015 John Wiley & Sons, Ltd. Copyright © 2015 John Wiley & Sons, Ltd.

  10. Evaluation of the SWOV-TNO three-dimensional crash victim model : comparison with the SWOV-TNO two-dimensional crash victim model.

    NARCIS (Netherlands)

    Maltha, J. Bacchetti, A.C. & Heijer, T.

    1977-01-01

    Two different computer programs have been developed for a two-dimensional and a three-dimensional crash victim model. In this study the three-dimensional model is tested in comparison with the two-dimensional model. A test run of the two-dimensional model is simulated with the SWOV-TNO

  11. Three-dimensional (3-D) model utilization for fracture reconstruction in oral and maxillofacial surgery: A case report

    Science.gov (United States)

    Damayanti, Ista; Lilies, Latief, Benny S.

    2017-02-01

    Three-dimensional (3-D) printing has been identified as an innovative manufacturing technology of functional parts. The 3-D model was produced based on CT-Scan using Osyrix software, where automatic segmentation was performed and convert into STL format. This STL format was then ready to be produced physically, layer-by-layer to create 3-D model.

  12. Three-Dimensional Model Test Verification of the New Cubipod Armoured Western Breakwater for Port of Hanstholm

    DEFF Research Database (Denmark)

    Eldrup, Mads Røge; Andersen, Thomas Lykke

    The present report presents results from a three-dimensional model test study carried out at Aalborg University in January 2018 with the new western breakwater in Port of Hanstholm as proposed by the contractor Aarsleff and their consultant Cowi. The objectives of the model tests were to study th...

  13. STRATAQ: A three-dimensional Chemical Transport Model of the stratosphere

    Directory of Open Access Journals (Sweden)

    B. Grassi

    Full Text Available A three-dimensional (3-D Chemical Transport Model (CTM of the stratosphere has been developed and used for a test study of the evolution of chemical species in the arctic lower stratosphere during winter 1996/97. This particular winter has been chosen for testing the model’s capabilities for its remarkable dynamical situation (very cold and strong polar vortex along with the availability of sparse chlorine, HNO3 and O3 data, showing also very low O3 values in late March/April. Due to those unusual features, the winter 1996/97 can be considered an excellent example of the impact of both dynamics and heterogeneous reactions on the chemistry of the stratosphere. Model integration has been performed from January to March 1997 and the resulting long-lived and short-lived tracer fields compared with available measurements. The model includes a detailed gas phase chemical scheme and a parameterization of the heterogeneous reactions occurring on liquid aerosol and polar stratospheric cloud (PSC surfaces. The transport is calculated using a semi-lagrangian flux scheme, forced by meteorological analyses. In such form, the STRATAQ CTM model is suitable for short-term integrations to study transport and chemical evolution related to "real" meteorological situations. Model simulation during the chosen winter shows intense PSC formation, with noticeable local HNO3 capture by PSCs, and the activation of vortex air leading to chlorine production and subsequent O3 destruction. The resulting model fields show generally good agreement with satellite data (MLS and TOMS, although the available observations, due to their limited number and time/space sparse nature, are not enough to effectively constraint the model. In particular, the model seems to perform well in reproducing the rapid processing of air inside the polar vortex on PSC converting reservoir species in active chlorine. In addition, it

  14. A model of Stokesian peristalsis and vesicle transport in a three-dimensional closed cavity.

    Science.gov (United States)

    Aranda, Vivian; Cortez, Ricardo; Fauci, Lisa

    2015-06-25

    The complexity of the mechanics involved in the mammalian reproductive process is evident. Neither an ovum nor an embryo is self-propelled, but move through the oviduct or uterus due to the peristaltic action of the tube walls, imposed pressure gradients, and perhaps ciliary motion. Here we use the method of regularized Stokeslets to model the transport of an ovum or an embryo within a peristaltic tube. We represent the ovum or the embryo as a spherical vesicle of finite volume - not a massless point particle. The outer membrane of the neutrally buoyant vesicle is discretized by nodes that are joined by a network of springs. The elastic moduli of these springs are chosen large enough so that a spherical shape is maintained. For simplicity, here we choose an axisymmetric tube where the geometry of the two-dimensional cross-section along the tube axis reflects that of the sagittal cross-section of the uterine cavity. Although the tube motion is axisymmetric, the presence of the vesicle within the tube requires a fully three-dimensional model. As was found in Yaniv et al. (2009, 2012) for a 2D closed channel, we find that the flow dynamics in a 3D peristaltic tube are strongly influenced by the closed end and the manner in which the peristaltic wave damps out towards the closure. In addition, we demonstrate that the trajectory of a vesicle of finite volume can greatly differ from the trajectory of a massless fluid particle initially placed at the vesicle׳s centroid. Copyright © 2015 Elsevier Ltd. All rights reserved.

  15. High-immersion three-dimensional display of the numerical computer model

    Science.gov (United States)

    Xing, Shujun; Yu, Xunbo; Zhao, Tianqi; Cai, Yuanfa; Chen, Duo; Chen, Zhidong; Sang, Xinzhu

    2013-08-01

    High-immersion three-dimensional (3D) displays making them valuable tools for many applications, such as designing and constructing desired building houses, industrial architecture design, aeronautics, scientific research, entertainment, media advertisement, military areas and so on. However, most technologies provide 3D display in the front of screens which are in parallel with the walls, and the sense of immersion is decreased. To get the right multi-view stereo ground image, cameras' photosensitive surface should be parallax to the public focus plane and the cameras' optical axes should be offset to the center of public focus plane both atvertical direction and horizontal direction. It is very common to use virtual cameras, which is an ideal pinhole camera to display 3D model in computer system. We can use virtual cameras to simulate the shooting method of multi-view ground based stereo image. Here, two virtual shooting methods for ground based high-immersion 3D display are presented. The position of virtual camera is determined by the people's eye position in the real world. When the observer stand in the circumcircle of 3D ground display, offset perspective projection virtual cameras is used. If the observer stands out the circumcircle of 3D ground display, offset perspective projection virtual cameras and the orthogonal projection virtual cameras are adopted. In this paper, we mainly discussed the parameter setting of virtual cameras. The Near Clip Plane parameter setting is the main point in the first method, while the rotation angle of virtual cameras is the main point in the second method. In order to validate the results, we use the D3D and OpenGL to render scenes of different viewpoints and generate a stereoscopic image. A realistic visualization system for 3D models is constructed and demonstrated for viewing horizontally, which provides high-immersion 3D visualization. The displayed 3D scenes are compared with the real objects in the real world.

  16. Three-dimensional simulations of pure deflagration models for thermonuclear supernovae

    International Nuclear Information System (INIS)

    Long, Min; Jordan, George C. IV; Van Rossum, Daniel R.; Diemer, Benedikt; Graziani, Carlo; Kessler, Richard; Rich, Paul; Lamb, Don Q.; Meyer, Bradley

    2014-01-01

    We present a systematic study of the pure deflagration model of Type Ia supernovae (SNe Ia) using three-dimensional, high-resolution, full-star hydrodynamical simulations, nucleosynthetic yields calculated using Lagrangian tracer particles, and light curves calculated using radiation transport. We evaluate the simulations by comparing their predicted light curves with many observed SNe Ia using the SALT2 data-driven model and find that the simulations may correspond to under-luminous SNe Iax. We explore the effects of the initial conditions on our results by varying the number of randomly selected ignition points from 63 to 3500, and the radius of the centered sphere they are confined in from 128 to 384 km. We find that the rate of nuclear burning depends on the number of ignition points at early times, the density of ignition points at intermediate times, and the radius of the confining sphere at late times. The results depend primarily on the number of ignition points, but we do not expect this to be the case in general. The simulations with few ignition points release more nuclear energy E nuc , have larger kinetic energies E K , and produce more 56 Ni than those with many ignition points, and differ in the distribution of 56 Ni, Si, and C/O in the ejecta. For these reasons, the simulations with few ignition points exhibit higher peak B-band absolute magnitudes M B and light curves that rise and decline more quickly; their M B and light curves resemble those of under-luminous SNe Iax, while those for simulations with many ignition points are not.

  17. The three-dimensional leading-edge vortex of a "hovering' model hawkmoth

    NARCIS (Netherlands)

    van den Berg, C.; Ellington, C.P.

    1997-01-01

    Recent flow visualization experiments with the hawkmoth, Manduca sexta, revealed a small but clear leading-edge vortex and a pronounced three-dimensional flow. Details of this flow pattern were studied with a scaled-up, robotic insect ('the flapper') that accurately mimicked the wing movements of a

  18. Coupling reducing k-points for supercell models of defects in three-dimensional photonic crystals

    DEFF Research Database (Denmark)

    Lægsgaard, Jesper; Bjarklev, Anders Overgaard

    2004-01-01

    The optimum choice of k-point for supercell calculations of defect states in a three-dimensional photonic crystal is investigated for the case of a supercell with a simple cubic (SC) structure. By using the k-point (1/4,1/4,1/4) it is possible to eliminate the symmetric part of the repeated...

  19. Regularized lattice Bhatnagar-Gross-Krook model for two- and three-dimensional cavity flow simulations.

    Science.gov (United States)

    Montessori, A; Falcucci, G; Prestininzi, P; La Rocca, M; Succi, S

    2014-05-01

    We investigate the accuracy and performance of the regularized version of the single-relaxation-time lattice Boltzmann equation for the case of two- and three-dimensional lid-driven cavities. The regularized version is shown to provide a significant gain in stability over the standard single-relaxation time, at a moderate computational overhead.

  20. THE CAPABILITIES USING OF THREE-DIMENSIONAL MODELING SYSTEM AUTOCAD IN TEACHING TO PERFORM GRAPHICS TASKS

    Directory of Open Access Journals (Sweden)

    A. V. Krasnyuk

    2008-03-01

    Full Text Available Three-dimensional design possibilities of the AutoCAD system for performing graphic tasks are presented in the article. On the basis of the studies conducted the features of application of computer-aided design system are noted and the methods allowing to decrease considerably the quantity of errors at making the drawings are offered.

  1. SEMICONDUCTOR DEVICES: A three-dimensional breakdown model of SOI lateral power transistors with a circular layout

    Science.gov (United States)

    Yufeng, Guo; Zhigong, Wang; Gene, Sheu

    2009-11-01

    This paper presents an analytical three-dimensional breakdown model of SOI lateral power devices with a circular layout. The Poisson equation is solved in cylindrical coordinates to obtain the radial surface potential and electric field distributions for both fully- and partially-depleted drift regions. The breakdown voltages for N+N and P+N junctions are derived and employed to investigate the impact of cathode region curvature. A modified RESURF criterion is proposed to provide a design guideline for optimizing the breakdown voltage and doping concentration in the drift region in three dimensional space. The analytical results agree well with MEDICI simulation results and experimental data from earlier publications.

  2. Explorable three-dimensional digital model of the female pelvis, pelvic contents, and perineum for anatomical education.

    Science.gov (United States)

    Sergovich, Aimée; Johnson, Marjorie; Wilson, Timothy D

    2010-01-01

    The anatomy of the pelvis is complex, multilayered, and its three-dimensional organization is conceptually difficult for students to grasp. The aim of this project was to create an explorable and projectable stereoscopic, three-dimensional (3D) model of the female pelvis and pelvic contents for anatomical education. The model was created using cryosection images obtained from the Visible Human Project, in conjunction with a general-purpose three-dimensional segmentation and surface-rendering program. Anatomical areas of interest were identified and labeled on consecutive images. Each 2D slice was reassembled, forming a three-dimensional model. The model includes the pelvic girdle, organs of the pelvic cavity, surrounding musculature, the perineum, neurovascular structures, and the peritoneum. Each structure can be controlled separately (e.g. added, subtracted, made transparent) to reveal organization and/or relationships between structures. The model can be manipulated and/or projected stereoscopically to visualize structures and relationships from different angles with excellent spatial perception. Because of its ease of use and versatility, we expect this model may provide a powerful teaching tool for learning in the classroom or in the laboratory. (c) 2010 American Association of Anatomists.

  3. Modeling of three-dimensional diffusible resistors with the one-dimensional tube multiplexing method

    International Nuclear Information System (INIS)

    Gillet, Jean-Numa; Degorce, Jean-Yves; Meunier, Michel

    2009-01-01

    Electronic-behavior modeling of three-dimensional (3D) p + -π-p + and n + -ν-n + semiconducting diffusible devices with highly accurate resistances for the design of analog resistors, which are compatible with the CMOS (complementary-metal-oxide-semiconductor) technologies, is performed in three dimensions with the fast tube multiplexing method (TMM). The current–voltage (I–V) curve of a silicon device is usually computed with traditional device simulators of technology computer-aided design (TCAD) based on the finite-element method (FEM). However, for the design of 3D p + -π-p + and n + -ν-n + diffusible resistors, they show a high computational cost and convergence that may fail with fully non-separable 3D dopant concentration profiles as observed in many diffusible resistors resulting from laser trimming. These problems are avoided with the proposed TMM, which divides the 3D resistor into one-dimensional (1D) thin tubes with longitudinal axes following the main orientation of the average electrical field in the tubes. The I–V curve is rapidly obtained for a device with a realistic 3D dopant profile, since a system of three first-order ordinary differential equations has to be solved for each 1D multiplexed tube with the TMM instead of three second-order partial differential equations in the traditional TCADs. Simulations with the TMM are successfully compared to experimental results from silicon-based 3D resistors fabricated by laser-induced dopant diffusion in the gaps of MOSFETs (metal-oxide-semiconductor field-effect transistors) without initial gate. Using thin tubes with other shapes than parallelepipeds as ring segments with toroidal lateral surfaces, the TMM can be generalized to electronic devices with other types of 3D diffusible microstructures

  4. Three dimensional models in uro-oncology: a future built with additive fabrication.

    Science.gov (United States)

    Manning, Todd G; O'Brien, Jonathan S; Christidis, Daniel; Perera, Marlon; Coles-Black, Jasamine; Chuen, Jason; Bolton, Damien M; Lawrentschuk, Nathan

    2018-04-01

    Three-dimensional (3D) printing was invented in 1983 but has only just begun to influence medicine and surgery. Conversion of digital images into physical models demonstrates promise to revolutionize multiple domains of surgery. In the field of uro-oncology, researchers and clinicians have recognized the potential of this technology and are working towards making it an integral part of urological practice. We review current literature regarding 3D printing and other 3D technology in the field of urology. A comprehensive assessment of contemporary literature was performed according to a modified PRISMA analysis for the purposes of this narrative review article. Medical databases that were searched included: Web of Science, EMBASE and Cochrane databases. Articles assessed were limited only to English-language peer-reviewed articles published between 1980 and 2017. The search terms used were "3D", "3-dimensional", "printing", "printing technology", "urology", "surgery". Acceptable articles were reviewed and incorporated for their merit and relevance with preference given for articles with high impact, original research and recent advances. Thirty-five publications were included in final analysis and discussion. The area of 3D printing in Urology shows promising results, but further research is required and cost reduction must occur before clinicians fully embrace its use. As costs continue to decline and diversity of materials continues to expand, research and clinical utilization will increase. Recent advances have demonstrated the potential of this technology in the realms of education and surgical optimization. The generation of personalized organs using 3D printing scaffolding remains the 'holy grail' of this technology.

  5. Effects of a three-dimensional hill on the wake characteristics of a model wind turbine

    Science.gov (United States)

    Yang, Xiaolei; Howard, Kevin B.; Guala, Michele; Sotiropoulos, Fotis

    2015-02-01

    The spatial evolution of a turbine wake downwind of a three-dimensional sinusoidal hill is studied using large-eddy simulations and wind tunnel measurements. The computed flow fields behind the hill show good agreement with wind tunnel measurements. Three different heights of the hill, i.e., hhill = zh - 0.5D, ≈ zh and =zh + 0.5D (where zh is the turbine hub height and D is the diameter of the turbine rotor), were considered. The effect of the hill turbine spacing was investigated through a comparative analysis with the turbine wake results in the undisturbed turbulent boundary layer. It is observed that the turbine wakes downwind of the hill with hhill ≈ zh and hhill = zh + 0.5D recover faster because of the increased entrainment of ambient flow into the turbine wake, which is due to the enhanced turbulent transport in both spanwise and vertical directions. In comparison with the turbine only case, significant increases in the turbulence kinetic energy (TKE) in the turbine wake are observed for the hill-turbine cases with hhill ≈ zh and hhill = zh + 0.5D. A velocity scale UT, defined in terms of the thrust force acting on the turbine, is introduced for the turbine-added velocity deficit and TKE. For the turbine-added velocity deficit, UT is shown to be an appropriate scale at wake locations sufficiently far downwind of the turbine (i.e., greater than or equal to 8D). The vertical profiles of the turbine-added TKE normalized by UT 2 are shown to nearly collapse in the wake both for the turbine only and hill-turbine cases at all locations greater than 4D downwind of the turbine. A simple model for the turbine-added TKE in complex terrain is also proposed based on the new physical insights obtained from our simulations.

  6. A bio-inspired device for drag reduction on a three-dimensional model vehicle.

    Science.gov (United States)

    Kim, Dongri; Lee, Hoon; Yi, Wook; Choi, Haecheon

    2016-03-10

    In this paper, we introduce a bio-mimetic device for the reduction of the drag force on a three-dimensional model vehicle, the Ahmed body (Ahmed et al 1984 SAE Technical Paper 840300). The device, called automatic moving deflector (AMD), is designed inspired by the movement of secondary feathers on bird's wing suction surface: i.e., secondary feathers pop up when massive separation occurs on bird's wing suction surface at high angles of attack, which increases the lift force at landing. The AMD is applied to the rear slanted surface of the Ahmed body to control the flow separation there. The angle of the slanted surface considered is 25° at which the drag coefficient on the Ahmed body is highest. The wind tunnel experiment is conducted at Re H  = 1.0 × 10(5)-3.8 × 10(5), based on the height of the Ahmed body (H) and the free-stream velocity (U ∞). Several AMDs of different sizes and materials are tested by measuring the drag force on the Ahmed body, and showed drag reductions up to 19%. The velocity and surface-pressure measurements show that AMD starts to pop up when the pressure in the thin gap between the slanted surface and AMD is much larger than that on the upper surface of AMD. We also derive an empirical formula that predicts the critical free-stream velocity at which AMD starts to operate. Finally, it is shown that the drag reduction by AMD is mainly attributed to a pressure recovery on the slanted surface by delaying the flow separation and suppressing the strength of the longitudinal vortices emanating from the lateral edges of the slanted surface.

  7. Differential diagnosis of vertical root fractures using reconstructed three-dimensional models of bone defects.

    Science.gov (United States)

    Komatsu, K; Abe, Y; Yoshioka, T; Ishimura, H; Ebihara, A; Suda, H

    2014-01-01

    The purpose of this study was to evaluate the accuracy of diagnosing vertical root fractures (VRFs) by comparing the volume of bone defects in VRFs with those in non-VRFs on reconstructed three-dimensional (3D) models (TDMs) using CBCT. 32 maxillary pre-molars and anterior teeth with radiolucent areas were evaluated on pre-operative CBCT images. Of the 32 teeth, 16 had a fractured root (VRF group) and 16 had a non-fractured root (non-VRF group). The radiolucent area of each tooth was traced in each dimension [mesiodistal, buccolingual and horizontal (the apicoincisal aspect)] by two observers, and 3D images were reconstructed with the Amira(®) software (Visage Imaging Inc., Richmond, Australia). The volume, V, of the TDM was divided into the coronal side and the periapical side at the horizontal slice through the apical foramen, and v was defined as the volume of the coronal side. The values of v/V were calculated for all cases. The Mann-Whitney U test was used to compare values between the VRF group and the non-VRF group (p < 0.05). A receiver operating characteristic (ROC) curve was constructed to select the optimal cut-point. There was a statistically significant difference in the value of v/V between the two groups (p < 0.05). With a cut-point derived from the ROC curve, and the sensitivity, specificity and accuracy of predicting the VRFs were 1.00, 0.75 and 0.88, respectively. Lesions resulting from VRFs can be distinguished from those of non-VRFs on 3D CBCT images with a high degree of accuracy, based on their different 3D shapes.

  8. A three-dimensional model to assess the effect of ankle joint axis misalignments in ankle-foot orthoses.

    Science.gov (United States)

    Fatone, Stefania; Johnson, William Brett; Tucker, Kerice

    2016-04-01

    Misalignment of an articulated ankle-foot orthosis joint axis with the anatomic joint axis may lead to discomfort, alterations in gait, and tissue damage. Theoretical, two-dimensional models describe the consequences of misalignments, but cannot capture the three-dimensional behavior of ankle-foot orthosis use. The purpose of this project was to develop a model to describe the effects of ankle-foot orthosis ankle joint misalignment in three dimensions. Computational simulation. Three-dimensional scans of a leg and ankle-foot orthosis were incorporated into a link segment model where the ankle-foot orthosis joint axis could be misaligned with the anatomic ankle joint axis. The leg/ankle-foot orthosis interface was modeled as a network of nodes connected by springs to estimate interface pressure. Motion between the leg and ankle-foot orthosis was calculated as the ankle joint moved through a gait cycle. While the three-dimensional model corroborated predictions of the previously published two-dimensional model that misalignments in the anterior -posterior direction would result in greater relative motion compared to misalignments in the proximal -distal direction, it provided greater insight showing that misalignments have asymmetrical effects. The three-dimensional model has been incorporated into a freely available computer program to assist others in understanding the consequences of joint misalignments. Models and simulations can be used to gain insight into functioning of systems of interest. We have developed a three-dimensional model to assess the effect of ankle joint axis misalignments in ankle-foot orthoses. The model has been incorporated into a freely available computer program to assist understanding of trainees and others interested in orthotics. © The International Society for Prosthetics and Orthotics 2014.

  9. Preliminary three-dimensional model of mantle convection with deformable, mobile continental lithosphere

    Science.gov (United States)

    Yoshida, Masaki

    2010-06-01

    Characteristic tectonic structures such as young orogenic belts and suture zones in a continent are expected to be mechanically weaker than the stable part of the continental lithosphere with the cratonic root (or cratonic lithosphere) and yield lateral viscosity variations in the continental lithosphere. In the present-day Earth's lithosphere, the pre-existing, mechanically weak zones emerge as a diffuse plate boundary. However, the dynamic role of a weak (low-viscosity) continental margin (WCM) in the stability of continental lithosphere has not been understood in terms of geophysics. Here, a new numerical simulation model of mantle convection with a compositionally and rheologically heterogeneous, deformable, mobile continental lithosphere is presented for the first time by using three-dimensional regional spherical-shell geometry. A compositionally buoyant and highly viscous continental assemblage with pre-existing WCMs, analogous to the past supercontinent, is modeled and imposed on well-developed mantle convection whose vigor of convection, internal heating rate, and rheological parameters are appropriate for the Earth's mantle. The visco-plastic oceanic lithosphere and the associated subduction of oceanic plates are incorporated. The time integration of the advection of continental materials with zero chemical diffusion is performed by a tracer particle method. The time evolution of mantle convection after setting the model supercontinent is followed over 800 Myr. Earth-like continental drift is successfully reproduced, and the characteristic thermal interaction between the mantle and the continent/supercontinent is observed in my new numerical model. Results reveal that the WCM protects the cratonic lithosphere from being stretched by the convecting mantle and may play a significant role in the stability of the cratonic lithosphere during the geological timescale because it acts as a buffer that prevents the cratonic lithosphere from undergoing global

  10. Three-Dimensional Printing Model as a Tool to Assist in Surgery for Large Mandibular Tumour: a Case Report

    Directory of Open Access Journals (Sweden)

    Kazuyuki Yusa

    2017-06-01

    Full Text Available Objectives: Recently, three-dimensional printing models based on preoperative computed tomography and magnetic resonance imaging images have been widely used in medical fields. This study presents an effective use of the three-dimensional printing model in exploring complex spatial relationship between the tumour and surrounding tissue and in simulation surgery based planning of the operative procedure. Material and Methods: The patient was a 7-year-old boy with ameloblastic fibro-odontoma. Prior to surgery, a hybrid three-dimensional printing model consisting of the jaw bone, the tumour and the inferior alveolar nerve was fabricated. After the simulation surgery based on this model, enucleation of the tumour, leaving tooth 46 intact (Universal Numbering System by ADA safe, was planned. Results: Enucleation of the tumour was successfully carried out. One year later, healing was found to be satisfactory both clinically and radiographically. Conclusions: The study presented an effective application of a novel hybrid three-dimensional printing model composed of hard and soft tissues. Such innovations can bring significant benefits, especially to the field of oncological surgery.

  11. The influence of prototype testing in three-dimensional aortic models on fenestrated endograft design.

    Science.gov (United States)

    Taher, Fadi; Falkensammer, Juergen; McCarte, Jamie; Strassegger, Johann; Uhlmann, Miriam; Schuch, Philipp; Assadian, Afshin

    2017-06-01

    The fenestrated Anaconda endograft (Vascutek/Terumo, Inchinnan, UK) is intended for the treatment of abdominal aortic aneurysms with an insufficient infrarenal landing zone. The endografts are custom-made with use of high-resolution, 1-mm-slice computed tomography angiography images. For every case, a nonsterile prototype and a three-dimensional (3D) model of the patient's aorta are constructed to allow the engineers as well as the physician to test-implant the device and to review the fit of the graft. The aim of this investigation was to assess the impact of 3D model construction and prototype testing on the design of the final sterile endograft. A prospectively held database on fenestrated endovascular aortic repair patients treated at a single institution was completed with data from the Vascutek engineers' prototype test results as well as the product request forms. Changes to endograft design based on prototype testing were assessed and are reported for all procedures. Between April 1, 2013, and August 18, 2015, 60 fenestrated Anaconda devices were implanted. Through prototype testing, engineers were able to identify and report potential risks to technical success related to use of the custom device for the respective patient. Theoretical concerns about endograft fit in the rigid model were expressed in 51 cases (85.0%), and the engineers suggested potential changes to the design of 21 grafts (35.0%). Thirteen cases (21.7%) were eventually modified after the surgeon's testing of the prototype. A second prototype was ordered in three cases (5.0%) because of extensive changes to endograft design, such as inclusion of an additional fenestration. Technical success rates were comparable for grafts that showed a perfect fit from the beginning and cases in which prototype testing resulted in a modification of graft design. Planning and construction of fenestrated endografts for complex aortic anatomies where exact fit and positioning of the graft are paramount to

  12. Three-Dimensional Numerical Modeling of Crustal Growth at Active Continental Margins

    Science.gov (United States)

    Zhu, G.; Gerya, T.; Tackley, P. J.

    2011-12-01

    Active margins are important sites of new continental crust formation by magmatic processes related to the subduction of oceanic plates. We investigate these phenomena using a three-dimensional coupled petrological-geochemical-thermomechanical numerical model, which combines a finite-difference flow solver with a non-diffusive marker-in-cell technique for advection (I3ELVIS code, Gerya and Yuen, PEPI,2007). The model includes mantle flow associated with the subducting plate, water release from the slab, fluid propagation that triggers partial melting at the slab surface, melt extraction and the resulting volcanic crustal growth at the surface. The model also accounts for variations in physical properties (mainly density and viscosity) of both fluids and rocks as a function of local conditions in temperature, pressure, deformation, nature of the rocks, and chemical exchanges. Our results show different patterns of crustal growth and surface topography, which are comparable to nature, during subduction at active continental margins. Often, two trench-parallel lines of magmatic activity, which reflect two maxima of melt production atop the slab, are formed on the surface. The melt extraction rate controls the patterns of new crust at different ages. Moving free water reflects the path of fluids, and the velocity of free water shows the trend of two parallel lines of magmatic activity. The formation of new crust in particular time intervals is distributed in finger-like shapes, corresponding to finger-like and ridge-like cold plumes developed atop the subducting slabs (Zhu et al., G-cubed,2009; PEPI,2011). Most of the new crust is basaltic, formed from peridotitic mantle. Granitic crust extracted from melted sediment and upper crust forms in a line closer to the trench, and its distribution reflects the finger-like cold plumes. Dacitic crust extracted from the melted lower crust forms in a line farther away from the trench, and its distribution is anticorrelated with

  13. The Virtual Solar System Project: Developing Conceptual Understanding of Astronomical Concepts through Building Three-Dimensional Computational Models.

    Science.gov (United States)

    Keating, Thomas; Barnett, Michael; Barab, Sasha A.; Hay, Kenneth E.

    2002-01-01

    Describes the Virtual Solar System (VSS) course which is one of the first attempts to integrate three-dimensional (3-D) computer modeling as a central component of introductory undergraduate education. Assesses changes in student understanding of astronomy concepts as a result of participating in an experimental introductory astronomy course in…

  14. The Impact of Three-Dimensional Computational Modeling on Student Understanding of Astronomy Concepts: A Qualitative Analysis. Research Report

    Science.gov (United States)

    Hansen, John; Barnett, Michael; MaKinster, James; Keating, Thomas

    2004-01-01

    In this study, we explore an alternate mode for teaching and learning the dynamic, three-dimensional (3D) relationships that are central to understanding astronomical concepts. To this end, we implemented an innovative undergraduate course in which we used inexpensive computer modeling tools. As the second of a two-paper series, this report…

  15. Three-dimensional structures of human phospholipase A2 from pancreas and synovial fluid by model building

    DEFF Research Database (Denmark)

    Christensen, I T; Jørgensen, Flemming Steen; Svensson, L A

    1993-01-01

    Three-dimensional structures of the enzyme phospholipase A2 (PLA2) from human pancreas and from human synovial fluid were constructed by model building based on high-resolution X-ray crystallographic structures and homology considerations. The structure of the human pancreatic PLA2 was based...

  16. Three-Dimensional Flow Modeling of a Self-wiping Corotating Twin-Screw Extruder. Part I : The Transporting Section

    NARCIS (Netherlands)

    Goffart, D.; Wal, D.J. van der; Klomp, E.M.; Hoogstraten, H.W.; Janssen, L.P.B.M.; Breysse, L.; Trolez, Y.

    1996-01-01

    A three-dimensional modeling of the transporting elements in a self-wiping corotating twin-screw extruder has been carried out by using the finite element package Sepran. This simulation uses the 3D geometry of the channel rolled over the twin-screw, which consists of the intermeshing and normal

  17. Migration of the Three-dimensional Wind Field (3DWF) Model from Linux to Windows and Mobile Platforms

    Science.gov (United States)

    2017-11-01

    pages were written in JavaScript to allow the user to run those Fortran90 and C executable programs as mentioned in the previous section to: 1) produce...documentation/ javascript . Huynh G, Wang Y, Williamson C. Building and vegetation rasterization for the three-dimensional wind field (3DWF) model. Aberdeen

  18. A three-dimensional human model of the fibroblast activation that accompanies bronchopulmonary dysplasia identifies Notch-mediated pathophysiology.

    Science.gov (United States)

    Sucre, Jennifer M S; Wilkinson, Dan; Vijayaraj, Preethi; Paul, Manash; Dunn, Bruce; Alva-Ornelas, Jackelyn A; Gomperts, Brigitte N

    2016-05-15

    Bronchopulmonary dysplasia (BPD) is a leading complication of premature birth and occurs primarily in infants delivered during the saccular stage of lung development. Histopathology shows decreased alveolarization and a pattern of fibroblast proliferation and differentiation to the myofibroblast phenotype. Little is known about the molecular pathways and cellular mechanisms that define BPD pathophysiology and progression. We have developed a novel three-dimensional human model of the fibroblast activation associated with BPD, and using this model we have identified the Notch pathway as a key driver of fibroblast activation and proliferation in response to changes in oxygen. Fetal lung fibroblasts were cultured on sodium alginate beads to generate lung organoids. After exposure to alternating hypoxia and hyperoxia, the organoids developed a phenotypic response characterized by increased α-smooth muscle actin (α-SMA) expression and other genes known to be upregulated in BPD and also demonstrated increased expression of downstream effectors of the Notch pathway. Inhibition of Notch with a γ-secretase inhibitor prevented the development of the pattern of cellular proliferation and α-SMA expression in our model. Analysis of human autopsy tissue from the lungs of infants who expired with BPD demonstrated evidence of Notch activation within fibrotic areas of the alveolar septae, suggesting that Notch may be a key driver of BPD pathophysiology. Copyright © 2016 the American Physiological Society.

  19. Three-dimensional simulations of Bingham plastic flows with the multiple-relaxation-time lattice Boltzmann model

    OpenAIRE

    Song-Gui Chen; Chuan-Hu Zhang; Yun-Tian Feng; Qi-Cheng Sun; Feng Jin

    2016-01-01

    This paper presents a three-dimensional (3D) parallel multiple-relaxation-time lattice Boltzmann model (MRT-LBM) for Bingham plastics which overcomes numerical instabilities in the simulation of non-Newtonian fluids for the Bhatnagar–Gross–Krook (BGK) model. The MRT-LBM and several related mathematical models are briefly described. Papanastasiou’s modified model is incorporated for better numerical stability. The impact of the relaxation parameters of the model is studied in detail. The MRT-L...

  20. Three-Dimensional Thermal Modeling of Dry Spent Nuclear Fuel Storage Canisters

    International Nuclear Information System (INIS)

    Lee, S.Y.

    1998-05-01

    One of the interim storage configurations being considered for aluminum-clad foreign research reactor fuel, such as the Material and Testing Reactor (MTR) design, is a dry storage facility. To support design studies of storage options, a computational and experimental program was conducted at the Savannah River Site (SRS). The objective was to develop computational fluid dynamics (CFD) conjugate models which would be benchmarked using data obtained from a full scale heat transfer experiment conducted in the SRS Experimental Thermal Fluids Laboratory. The current work describes the modeling approach and presents comparison of computational results with experimental data. The experimental set up consists of an instrumented fuel canister 16 inches in diameter and 36 inches in height.The canister contains a sealed fuel can which is designed to store four fuel assemblies. The fuel assembly heat generation is simulated by an imbeded electrical heater. Each fuel assembly is separated from the others by a stainless steel grid and the assemblies can communicate thermal-hydraulically only through narrow slot holes located at the top and bottom of the assembly. The flow within an enclosed canister is a buoyancy-induced motion resulting from body force acting on density gradients which arise from fluid temperature gradients. The canister is filled with helium or nitrogen gas. The heated canister is surrounded by five unheated dummy canisters and is located inside a wind tunnel. During the test, data are obtained for the radial and axial heat flux/temperature profiles inside the canister, air velocity outside the canister, and ambient air temperature. CFD approach has been used to model the three-dimensional convective velocity and temperature distributions within a single dry storage canister of MTR fuel elements.The final analysis was made for the cases with internal heat source of 85 to 138 watts per MTR fuel element (equivalent to 22 to 35 kW/m3) using various different

  1. Three-Dimensional Super-Resolution: Theory, Modeling, and Field Tests Results

    Science.gov (United States)

    Bulyshev, Alexander; Amzajerdian, Farzin; Roback, Vincent E.; Hines, Glenn; Pierrottet, Diego; Reisse, Robert

    2014-01-01

    Many flash lidar applications continue to demand higher three-dimensional image resolution beyond the current state-of-the-art technology of the detector arrays and their associated readout circuits. Even with the available number of focal plane pixels, the required number of photons for illuminating all the pixels may impose impractical requirements on the laser pulse energy or the receiver aperture size. Therefore, image resolution enhancement by means of a super-resolution algorithm in near real time presents a very attractive solution for a wide range of flash lidar applications. This paper describes a superresolution technique and illustrates its performance and merits for generating three-dimensional image frames at a video rate.

  2. Systems and methods that generate height map models for efficient three dimensional reconstruction from depth information

    Science.gov (United States)

    Frahm, Jan-Michael; Pollefeys, Marc Andre Leon; Gallup, David Robert

    2015-12-08

    Methods of generating a three dimensional representation of an object in a reference plane from a depth map including distances from a reference point to pixels in an image of the object taken from a reference point. Weights are assigned to respective voxels in a three dimensional grid along rays extending from the reference point through the pixels in the image based on the distances in the depth map from the reference point to the respective pixels, and a height map including an array of height values in the reference plane is formed based on the assigned weights. An n-layer height map may be constructed by generating a probabilistic occupancy grid for the voxels and forming an n-dimensional height map comprising an array of layer height values in the reference plane based on the probabilistic occupancy grid.

  3. Locomotion in ornithischian dinosaurs: an assessment using three-dimensional computational modelling.

    Science.gov (United States)

    Maidment, Susannah C R; Bates, Karl T; Falkingham, Peter L; VanBuren, Collin; Arbour, Victoria; Barrett, Paul M

    2014-08-01

    Ornithischian dinosaurs were primitively bipedal with forelimbs modified for grasping, but quadrupedalism evolved in the clade on at least three occasions independently. Outside of Ornithischia, quadrupedality from bipedal ancestors has only evolved on two other occasions, making this one of the rarest locomotory transitions in tetrapod evolutionary history. The osteological and myological changes associated with these transitions have only recently been documented, and the biomechanical consequences of these changes remain to be examined. Here, we review previous approaches to understanding locomotion in extinct animals, which can be broadly split into form-function approaches using analogy based on extant animals, limb-bone scaling, and computational approaches. We then carry out the first systematic attempt to quantify changes in locomotor muscle function in bipedal and quadrupedal ornithischian dinosaurs. Using three-dimensional computational modelling of the major pelvic locomotor muscle moment arms, we examine similarities and differences among individual taxa, between quadrupedal and bipedal taxa, and among taxa representing the three major ornithischian lineages (Thyreophora, Ornithopoda, Marginocephalia). Our results suggest that the ceratopsid Chasmosaurus and the ornithopod Hypsilophodon have relatively low moment arms for most muscles and most functions, perhaps suggesting poor locomotor performance in these taxa. Quadrupeds have higher abductor moment arms than bipeds, which we suggest is due to the overall wider bodies of the quadrupeds modelled. A peak in extensor moment arms at more extended hip angles and lower medial rotator moment arms in quadrupeds than in bipeds may be due to a more columnar hindlimb and loss of medial rotation as a form of lateral limb support in quadrupeds. We are not able to identify trends in moment arm evolution across Ornithischia as a whole, suggesting that the bipedal ancestry of ornithischians did not constrain the

  4. Clinical value of virtual three-dimensional instrument and cerebral aneurysm models in the interventional preoperative simulation

    International Nuclear Information System (INIS)

    Wei Xin; Xie Xiaodong; Wang Chaohua

    2007-01-01

    Objective: To establish virtual three-dimensional instrument and cerebral aneurysm models by using three-dimensional moulding software, and to explore the effect of the models in interventional preoperative simulation. Methods: The virtual individual models including cerebral arteries and aneurysms were established by using the three-dimensional moulding software of 3D Studio MAX R3 based on standard virtual cerebral aneurysm models and individual DSA image. The virtual catheter, guide wire, stent and coil were also established. The study of interventional preoperative simulation was run in personal computer, and included 3 clinical cases. Results: The simulation results of the working angle and the moulding angle of the head of catheter and guide wire in 3 cases were identical with that of operation results. The simulation results of the requirement of number and size of coil in 1 case of anterior communicating aneurysm and 1 case of posterior communicating aneurysm were identical with that of operation results. The simulation results of coil for aneurysmal shape in 1 case of giant internal carotid artery aneurysm were more than 2 three-dimensional coils with size of 3 mm x 3 cm from the operation results, and the position of the second coil in aneurysmal neck was adjusted according to the results of real-time simulation. The results of retrospective simulation of operation procedure indicated that the simulation methods for regular and small aneurysms could become a routine simulation means but more simulation experience was needed to build up for the giant aneurysms. Conclusions: The virtual three-dimensional instrument and cerebral aneurysm models established by the general software provided a new study method for neuro-interventional preoperative simulation, and it played an important guidance role in developing neuro-interventional operation. (authors)

  5. THREE-DIMENSIONAL NONLINEAR FINITE ELEMENT MODELING FOR LATERALLY LOADED VERTICAL PILES

    Directory of Open Access Journals (Sweden)

    M. Kubilay KELESOĞLU

    2006-01-01

    Full Text Available This paper presents a study for laterally loaded free head concrete piles using the finite element method (FEM. The finite element mesh is constituted from three-dimensional elements. The pile and soil boundary are defined cylindrically while lateral load is defined as single concentrated load from the top of the pile head. Various types of soil and pile properties are analysed and the load-deformation curves for different types of soils namely, sands and clays are evaluated.

  6. Three-dimensional finite element modelling of the uniaxial tension test

    DEFF Research Database (Denmark)

    Østergaard, Lennart; Stang, Henrik

    2002-01-01

    . One of the most direct methods for determination of the σ-w relationship is the uniaxial tension test, where a notched specimen is pulled apart while the tensile load and the crack opening displacement is observed. This method is appealing since the interpretation is straightforward. The method...... is examined in this paper through three dimensional finite element analyses. It is concluded that the interpretation of the uniaxial tension test is indeed straightforward, if the testing machine stiffness is sufficiently high....

  7. Locating and quantifying geological uncertainty in three-dimensional models : analysis of the Gippsland Basin, southeastern Australia

    OpenAIRE

    Lindsay, M. D.; Ailleres, L.; Jessell, Mark; de Kemp, E. A.; Betts, P. G.

    2012-01-01

    Geological three-dimensional (3D) models are constructed to reliably represent a given geological target. The reliability of a model is heavily dependent on the input data and is sensitive to uncertainty. This study examines the uncertainty introduced by geological orientation data by producing a suite of implicit 3d models generated from orientation measurements subjected to uncertainty simulations. The resulting uncertainty associated with different regions of the geological model can be lo...

  8. Improvement of a three-dimensional atmospheric dynamic model and examination of its performance over complex terrain

    International Nuclear Information System (INIS)

    Nagai, Haruyasu; Yamazawa, Hiromi

    1994-11-01

    A three-dimensional atmospheric dynamic model (PHYSIC) was improved and its performance was examined using the meteorological data observed at a coastal area with a complex terrain. To introduce synoptic meteorological conditions into the model, the initial and boundary conditions were improved. By this improvement, the model can predict the temporal change of wind field for more than 24 hours. Moreover, the model successfully simulates the land and sea breeze observed at Shimokita area in the summer of 1992. (author)

  9. Antitumor activities of the synthetic retinoid ST1926 in two-dimensional and three-dimensional human breast cancer models.

    Science.gov (United States)

    Aouad, Patrick; Saikali, Melody; Abdel-Samad, Rana; Fostok, Sabreen; El-Houjeiri, Leeanna; Pisano, Claudio; Talhouk, Rabih; Darwiche, Nadine

    2017-08-01

    Despite recent advances in chemotherapy, aggressive and metastatic breast cancers remain refractory to targeted therapy and the development of novel drugs is urgently needed. Retinoids are crucial regulators of cellular proliferation, differentiation, and cell death, and have shown potent chemotherapeutic and chemopreventive properties. The major drawback of the use of all-trans retinoic acid (ATRA) in cancer therapy is disease relapse. Therefore, synthetic retinoids, specifically ST1926, have emerged as potent anticancer agents. Given the importance of the microenvironment in modulating the response of cancer cells to chemotherapeutic drugs, we investigated the antitumor activities of ST1926 in two-dimensional (2D) and different three-dimensional (3D) human breast cancer models and compared them with ATRA. We have shown that in 2D cell culture models, ATRA-resistant MCF-7 and MDA-MB-231 cells were sensitive to ST1926 at submicromolar concentrations that spared the 'normal-like' breast epithelial cells. ST1926 induced apoptosis and S-phase arrest, caused DNA damage, and downregulated the Wnt/β-catenin pathway in breast cancer cells in 2D and 3D cell culture models. ST1926-mediated growth inhibition was independent of the retinoid receptor-signaling pathway. Long-term treatments with low submicromolar ST1926 concentrations reduced the anchorage-independent growth and decreased the sphere-forming ability of breast cancer progenitor cells in the sphere formation assay. Furthermore, ST1926 potently induced cell death of breast cancer cells under 3D conditions and spared the lumen-forming ability of normal-like breast epithelial cells. In tested 3D models, ATRA had minimal effects on the growth of breast cancer cells compared with ST1926. In summary, our results highlight the therapeutic potential of ST1926 in breast cancer and warrant its further clinical development.

  10. Beam halo studies using a three-dimensional particle-core model

    Directory of Open Access Journals (Sweden)

    Ji Qiang

    2000-06-01

    Full Text Available In this paper we present a study of beam halo based on a three-dimensional particle-core model of an ellipsoidal bunched beam in a constant focusing channel including the effects of nonlinear rf focusing. For an initially mismatched beam, three linear envelope modes—a high frequency mode, a low frequency mode, and a quadrupole mode—are identified for an azimuthally symmetric bunched beam. The high frequency mode has three components all in phase; the low frequency mode has the transverse components in phase and the longitudinal component 180° out of phase; the quadrupole mode has no longitudinal component, and the two transverse components in the mode are 180° out of phase. We also study the case of an ellipsoidal bunched beam without azimuthal symmetry and find that the high frequency mode and the low frequency mode are still present but the quadrupole mode is replaced by a new mode with transverse components 180° out of phase and a nonzero longitudinal component. Previous studies, which generally addressed the situation where the longitudinal-to-transverse focusing strength is roughly 0.6 or less, conclude that the oscillation of the high frequency mode is predominantly transverse, and that of the low frequency mode is predominantly longitudinal. In this paper we present a systematic study of the features of the modes as a function of the longitudinal-to-transverse focusing strength ratio. We find that, when the ratio is greater than unity, the high frequency mode may contain a significant longitudinal component. Thus, excitation of the high frequency mode in this situation can be responsible for the formation of longitudinal beam halo. Furthermore, while previous studies have observed halo amplitudes roughly 2–3 times the matched beam edge, for the present parameters we observe much larger amplitudes (5 times or more. This is due to the fact that the longitudinal-to-transverse focusing ratio used here is greater than that of previous

  11. NF-κB regulates radioresistance mediated by β1-integrin in three-dimensional culture of breast cancer cells.

    Science.gov (United States)

    Ahmed, Kazi Mokim; Zhang, Hui; Park, Catherine C

    2013-06-15

    β1-integrin induction enhances breast cancer cell survival after exposure to ionizing radiation (IR), but the mechanisms of this effect remain unclear. Although NF-κB initiates prosurvival signaling pathways post-IR, the molecular function of NF-κB with other key elements in radioresistance, particularly with respect to extracellular matrix-induced signaling, is not known. We discovered a typical NF-κB-binding site in the β1-integrin promoter region, indicating a possible regulatory role for NF-κB. Using three-dimensional laminin-rich extracellular matrix (3D lrECM) culture, we show that NF-κB is required for β1-integrin transactivation in T4-2 breast cancer cells post-IR. Inhibition of NF-κB reduced clonogenic survival and induced apoptosis and cytostasis in formed tumor colonies. In addition, T4-2 tumors with inhibition of NF-κB activity exhibit decreased growth in athymic mice, which was further reduced by IR with downregulated β1-integrin expression. Direct interactions between β1-integrin and NF-κB p65 were induced in nonmalignant breast epithelial cells, but not in malignant cells, indicating context-specific regulation. As β1-integrin also activates NF-κB, our findings reveal a novel forward feedback pathway that could be targeted to enhance therapy. ©2013 AACR.

  12. Identifying cell and molecular stress after radiation in a three-dimensional (3-D) model of oral mucositis

    International Nuclear Information System (INIS)

    Lambros, Maria Polikandritou; Parsa, Cyrus; Mulamalla, HariChandana; Orlando, Robert; Lau, Bernard; Huang, Ying; Pon, Doreen; Chow, Moses

    2011-01-01

    Research highlights: → We irradiated a 3-D human oral cell culture of keratinocytes and fibroblasts with 12 and 2 Gy. → 6 h after irradiation the histopathology and apoptosis of the 3-D culture were evaluated. Microarrays were used to assess the gene expression in the irradiated 3-D tissue. → 12 Gy induced significant histopathologic changes and cellular apoptosis. → 12 Gy significantly affected genes of the NF-kB pathway, inflammatory cytokines and DAMPs. -- Abstract: Mucositis is a debilitating adverse effect of chemotherapy and radiation treatment. It is important to develop a simple and reliable in vitro model, which can routinely be used to screen new drugs for prevention and treatment of mucositis. Furthermore, identifying cell and molecular stresses especially in the initiation phase of mucositis in this model will help towards this end. We evaluated a three-dimensional (3-D) human oral cell culture that consisted of oral keratinocytes and fibroblasts as a model of oral mucositis. The 3-D cell culture model was irradiated with 12 or 2 Gy. Six hours after the irradiation we evaluated microscopic sections of the cell culture for evidence of morphologic changes including apoptosis. We used microarrays to compare the expression of several genes from the irradiated tissue with identical genes from tissue that was not irradiated. We found that irradiation with 12 Gy induced significant histopathologic effects including cellular apoptosis. Irradiation significantly affected the expression of several genes of the NF-kB pathway and several inflammatory cytokines, such as IL-1B, 1L-8, NF-kB1, and FOS compared to tissue that was not irradiated. We identified significant upregulation of several genes that belong to damage-associated molecular patterns (DAMPs) such as HMB1, S100A13, SA10014, and SA10016 in the 3-D tissues that received 12 Gy but not in tissues that received 2 Gy. In conclusion, this model quantifies radiation damage and this is an important first

  13. A novel electrospun biphasic scaffold provides optimal three-dimensional topography for in vitro co-culture of airway epithelial and fibroblast cells.

    Science.gov (United States)

    Morris, G E; Bridge, J C; Brace, L A; Knox, A J; Aylott, J W; Brightling, C E; Ghaemmaghami, A M; Rose, F R A J

    2014-09-01

    Conventional airway in vitro models focus upon the function of individual structural cells cultured in a two-dimensional monolayer, with limited three-dimensional (3D) models of the bronchial mucosa. Electrospinning offers an attractive method to produce defined, porous 3D matrices for cell culture. To investigate the effects of fibre diameter on airway epithelial and fibroblast cell growth and functionality, we manipulated the concentration and deposition rate of the non-degradable polymer polyethylene terephthalate to create fibres with diameters ranging from nanometre to micrometre. The nanofibre scaffold closely resembles the basement membrane of the bronchiole mucosal layer, and epithelial cells cultured at the air-liquid interface on this scaffold showed polarized differentiation. The microfibre scaffold mimics the porous sub-mucosal layer of the airway into which lung fibroblast cells showed good penetration. Using these defined electrospinning parameters we created a biphasic scaffold with 3D topography tailored for optimal growth of both cell types. Epithelial and fibroblast cells were co-cultured onto the apical nanofibre phase and the basal microfibre phase respectively, with enhanced epithelial barrier formation observed upon co-culture. This biphasic scaffold provides a novel 3D in vitro platform optimized to mimic the different microenvironments the cells encounter in vivo on which to investigate key airway structural cell interactions in airway diseases such as asthma.

  14. A comparison of three-dimensional culture systems to evaluate in vitro chondrogenesis of equine bone marrow-derived mesenchymal stem cells.

    Science.gov (United States)

    Watts, Ashlee E; Ackerman-Yost, Jeremy C; Nixon, Alan J

    2013-10-01

    To compare in vitro three-dimensional (3D) culture systems that model chondrogenesis of bone marrow-derived mesenchymal stem cells (MSCs). MSCs from five horses 2-3 years of age were consolidated in fibrin 0.3% alginate, 1.2% alginate, 2.5×10(5) cell pellets, 5×10(5) cell pellets, and 2% agarose, and maintained in chondrogenic medium with supplemental TGF-β1 for 4 weeks. Pellets and media were tested at days 1, 14, and 28 for gene expression of markers of chondrogenic maturation and hypertrophy (ACAN, COL2B, COL10, SOX9, 18S), and evaluated by histology (hematoxylin and eosin, Toluidine Blue) and immunohistochemistry (collagen type II and X). alginate, fibrin alginate (FA), and both pellet culture systems resulted in chondrogenic transformation. Adequate RNA was not obtained from agarose cultures at any time point. There was increased COL2B, ACAN, and SOX9 expression on day 14 from both pellet culture systems. On day 28, increased expression of COL2B was maintained in 5×10(5) cell pellets and there was no difference in ACAN and SOX9 between FA and both pellet cultures. COL10 expression was significantly lower in FA cultures on day 28. Collagen type II was abundantly formed in all culture systems except alginate and collagen type X was least in FA hydrogels. equine MSCs respond to 3D culture in FA blended hydrogel and both pellet culture systems with chondrogenic induction. For prevention of terminal differentiation and hypertrophy, FA culture may be superior to pellet culture systems.

  15. Mapping three-dimensional geological features from remotely-sensed images and digital elevation models

    Science.gov (United States)

    Morris, Kevin Peter

    thinning and extraction) and manual interpretation techniques are used to identify a set of 'geological primitives' (linear or arc features representing lithological boundaries) within these data. Inclusion of the DEM data provides the three-dimensional co-ordinates of these primitives enabling a least-squares fit to be employed to calculate dip and strike values, based, initially, on the assumption of a simple, linearly dipping structural model. A very large number of scene 'primitives' is identified using these procedures, only some of which have geological significance. Knowledge-based rules are therefore used to identify the relevant. For example, rules are developed to identify lake edges, forest boundaries, forest tracks, rock-vegetation boundaries, and areas of geomorphological interest. Confidence in the geological significance of some of the geological primitives is increased where they are found independently in both the DEM and remotely sensed data. The dip and strike values derived in this way are compared to information taken from the published geological map for this area, as well as measurements taken in the field. Many results are shown to correspond closely to those taken from the map and in the field, with an error of < 1°. These data and rules are incorporated into an expert system which, initially, produces a simple model of the geological structure. The system also provides a graphical user interface for manual control and interpretation, where necessary. Although the system currently only allows a relatively simple structural model (linearly dipping with faulting), in the future it will be possible to extend the system to model more complex features, such as anticlines, synclines, thrusts, nappes, and igneous intrusions.

  16. Innovative three-dimensional neutronics analyses directly coupled with cad models of geometrically complex fusion systems

    International Nuclear Information System (INIS)

    Sawan, M.; Wilson, P.; El-Guebaly, L.; Henderson, D.; Sviatoslavsky, G.; Bohm, T.; Kiedrowski, B.; Ibrahim, A.; Smith, B.; Slaybaugh, R.; Tautges, T.

    2007-01-01

    Fusion systems are, in general, geometrically complex requiring detailed three-dimensional (3-D) nuclear analysis. This analysis is required to address tritium self-sufficiency, nuclear heating, radiation damage, shielding, and radiation streaming issues. To facilitate such calculations, we developed an innovative computational tool that is based on the continuous energy Monte Carlo code MCNP and permits the direct use of CAD-based solid models in the ray-tracing. This allows performing the neutronics calculations in a model that preserves the geometrical details without any simplification, eliminates possible human error in modeling the geometry for MCNP, and allows faster design iterations. In addition to improving the work flow for simulating complex 3- D geometries, it allows a richer representation of the geometry compared to the standard 2nd order polynomial representation. This newly developed tool has been successfully tested for a detailed 40 degree sector benchmark of the International Thermonuclear Experimental Reactor (ITER). The calculations included determining the poloidal variation of the neutron wall loading, flux and nuclear heating in the divertor components, nuclear heating in toroidal field coils, and radiation streaming in the mid-plane port. The tool has been applied to perform 3-D nuclear analysis for several fusion designs including the ARIES Compact Stellarator (ARIES-CS), the High Average Power Laser (HAPL) inertial fusion power plant, and ITER first wall/shield (FWS) modules. The ARIES-CS stellarator has a first wall shape and a plasma profile that varies toroidally within each field period compared to the uniform toroidal shape in tokamaks. Such variation cannot be modeled analytically in the standard MCNP code. The impact of the complex helical geometry and the non-uniform blanket and divertor on the overall tritium breeding ratio and total nuclear heating was determined. In addition, we calculated the neutron wall loading variation in

  17. Evaluations of Three-Dimensional Building Model Reconstruction from LiDAR Point Clouds and Single-View Perspective Imagery

    Directory of Open Access Journals (Sweden)

    F. Tsai

    2014-06-01

    Full Text Available This paper briefly presents two approaches for effective three-dimensional (3D building model reconstruction from terrestrial laser scanning (TLS data and single perspective view imagery and assesses their applicability to the reconstruction of 3D models of landmark or historical buildings. The collected LiDAR point clouds are registered based on conjugate points identified using a seven-parameter transformation system. Three dimensional models are generated using plan and surface fitting algorithms. The proposed single-view reconstruction (SVR method is based on vanishing points and single-view metrology. More detailed models can also be generated according to semantic analysis of the façade images. Experimental results presented in this paper demonstrate that both TLS and SVR approaches can successfully produce accurate and detailed 3D building models from LiDAR point clouds or different types of single-view perspective images.

  18. Galactose-Functionalized PolyHIPE Scaffolds for Use in Routine Three Dimensional Culture of Mammalian Hepatocytes

    Science.gov (United States)

    2013-01-01

    Three-dimensional (3D) cell culture is regarded as a more physiologically relevant method of growing cells in the laboratory compared to traditional monolayer cultures. Recently, the application of polystyrene-based scaffolds produced using polyHIPE technology (porous polymers derived from high internal phase emulsions) for routine 3D cell culture applications has generated very promising results in terms of improved replication of native cellular function in the laboratory. These materials, which are now available as commercial scaffolds, are superior to many other 3D cell substrates due to their high porosity, controllable morphology, and suitable mechanical strength. However, until now there have been no reports describing the surface-modification of these materials for enhanced cell adhesion and function. This study, therefore, describes the surface functionalization of these materials with galactose, a carbohydrate known to specifically bind to hepatocytes via the asialoglycoprotein receptor (ASGPR), to further improve hepatocyte adhesion and function when growing on the scaffold. We first modify a typical polystyrene-based polyHIPE to produce a cell culture scaffold carrying pendent activated-ester functionality. This was achieved via the incorporation of pentafluorophenyl acrylate (PFPA) into the initial styrene (STY) emulsion, which upon polymerization formed a polyHIPE with a porosity of 92% and an average void diameter of 33 μm. Histological analysis showed that this polyHIPE was a suitable 3D scaffold for hepatocyte cell culture. Galactose-functionalized scaffolds were then prepared by attaching 2′-aminoethyl-β-d-galactopyranoside to this PFPA functionalized polyHIPE via displacement of the labile pentafluorophenyl group, to yield scaffolds with approximately ca. 7–9% surface carbohydrate. Experiments with primary rat hepatocytes showed that cellular albumin synthesis was greatly enhanced during the initial adhesion/settlement period of cells on

  19. Modeling three dimensional flows in the lower plenum of Loviisa nuclear power plant with the CFX code

    International Nuclear Information System (INIS)

    Bernard, J.P.; Haekkinen, J.; Sarkomaa, P.

    1997-01-01

    A number of numerical studies on three-dimensional flows in reactor vessels of nuclear power plants have been carried out recently. The main reason for this is the phenomenon of inherent boron dilution. These studies have been done for Loviisa nuclear power plant as well. This presentation focuses on the three dimensional modeling of Loviisa's lower plenum with the commercial CFX code. The investigations particularly deal with the modeling of the two perforated plates located at the bottom and just below the core of the vessel. The perforated plates can be modeled as porous media in the CFX code. The model has been validated against available experimental data. Velocity profiles around the plates, the pressure drop through the plates, and the simulation of mixing factors have been investigated specifically. (author)

  20. Experiments with three-dimensional riblets as an idealized model of shark skin

    Energy Technology Data Exchange (ETDEWEB)

    Bechert, D.W.; Bruse, M.; Hage, W. [DLR Deutsches Zentrum fuer Luft- und Raumfahrt e.V., Berlin (Germany). Dept. of Turbulence Res.

    2000-05-01

    The skin of fast sharks exhibits a rather intriguing three-dimensional rib pattern. Therefore, the question arises whether or not such three-dimensional riblet surfaces may produce an equivalent or even higher drag reduction than straight two-dimensional riblets. Previously, the latter have been shown to reduce turbulent wall shear stress by up to 10%. Hence, the drag reduction by three-dimensional riblet surfaces is investigated experimentally. Our idealized 3D-surface consists of sharp-edged fin-shaped elements arranged in an interlocking array. The turbulent wall shear stress on this surface is measured using direct force balances. In a first attempt, wind tunnel experiments with about 365000 tiny fin elements per test surface have been carried out. Due to the complexity of the surface manufacturing process, a comprehensive parametric study was not possible. These initial wind tunnel data, however, hinted at an appreciable drag reduction. Subsequently, in order to have a better judgement on the potential of these 3D-surfaces, oil channel experiments are carried out. In our new oil channel, the geometrical dimensions of the fins can be magnified 10 times in size as compared to the initial wind tunnel experiments, i.e., from typically 0.5 mm to 5 mm. For these latter oil channel experiments, novel test plates with variable fin configuration have been manufactured, with 1920-4000 fins. This enhanced variability permits measurements with a comparatively large parameter range. As a result of our measurements, it can be concluded, that 3D-riblet surfaces do indeed produce an appreciable drag reduction. We found as much as 7.3% decreased turbulent shear stress, as compared to a smooth reference plate.

  1. Three-dimensional radiative transfer modeling using the control volume finite element method

    International Nuclear Information System (INIS)

    Grissa, H.; Askri, F.; Ben Salah, M.; Ben Nasrallah, S.

    2007-01-01

    In the present study, a three-dimensional algorithm for the treatment of radiative heat transfer in emitting, absorbing and scattering media is developed. The approach is based on the utilization of control volume finite element method (CVFEM) which, to the knowledge of the authors, is applied at the first time to 3D radiative heat transfer in participating media. The accuracy of the present algorithm is tested by comparing its predictions to other published works. Comparisons show that CVFEM produces good results. Moreover, this approach permits compatibility with other numerical methods used for computational fluids mechanics problems

  2. Modelling three-dimensional beta sources for skin dose calculations using VARSKIN Mod 2

    International Nuclear Information System (INIS)

    Durham, J.S.; Reece, W.D.

    1991-01-01

    The computer code VARSKIN Mod 1 has been modified to include three-dimensional sources and insertion of layers of protective clothing between the source and the skin. The new code, VARSKIN Mod 2, is described, and the sensitivity of the dose to source geometry, diameter, thickness, density, and protective clothing thickness are presented for low, intermediate, and high energy beta emitters. Finally, doses calculated using VARSKIN Mod 2 are compared with dose measured from hot particles found in nuclear power plants. The results indicate that VARSKIN Mod 2 will greatly improve the accuracy of hot particle dosimetry. (author)

  3. Verification and transfer of thermal pollution model. Volume 4: User's manual for three-dimensional rigid-lid model

    Science.gov (United States)

    Lee, S. S.; Nwadike, E. V.; Sinha, S. E.

    1982-01-01

    The theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model are described. Model verification at two sites, a separate user's manual for each model are included. The 3-D model has two forms: free surface and rigid lid. The former allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth, estuaries and coastal regions. The latter is suited for small surface wave heights compared to depth because surface elevation was removed as a parameter. These models allow computation of time dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions. The free surface model also provides surface height variations with time.

  4. Three-dimensional reconstruction and modeling of middle ear biomechanics by high-resolution computed tomography and finite element analysis.

    Science.gov (United States)

    Lee, Chia-Fone; Chen, Peir-Rong; Lee, Wen-Jeng; Chen, Jyh-Horng; Liu, Tien-Chen

    2006-05-01

    To present a systematic and practical approach that uses high-resolution computed tomography to derive models of the middle ear for finite element analysis. This prospective study included 31 subjects with normal hearing and no previous otologic disorders. Temporal bone images obtained from 15 right ears and 16 left ears were used for evaluation and reconstruction. High-resolution computed tomography of temporal bone was performed using simultaneous acquisition of 16 sections with a collimated slice thickness of 0.625 mm. All images were transferred to an Amira visualization system for three-dimensional reconstruction. The created three-dimensional model was translated into two commercial modeling packages, Patran and ANSYS, for finite element analysis. The characteristic dimensions of the model were measured and compared with previously published histologic section data. This result confirms that the geometric model created by the proposed method is accurate except that the tympanic membrane is thicker than when measured by the histologic section method. No obvious difference in the geometrical dimension between right and left ossicles was found (P > .05). The three-dimensional model created by finite element method and predicted umbo and stapes displacements are close to the bounds of the experimental curves of Nishihara's, Huber's, Gan's, and Sun's data across the frequency range of 100 to 8000 Hz. The model includes a description of the geometry of the middle ear components and dynamic equations of vibration. The proposed method is quick, practical, low-cost, and, most importantly, noninvasive as compared with histologic section methods.

  5. A review of the issues surrounding three-dimensional computed tomography for medical modelling using rapid prototyping techniques

    Energy Technology Data Exchange (ETDEWEB)

    Bibb, Richard [Department of Design and Technology, Loughborough University, Ashby Road, Loughborough, Leicestershire LE11 3TU (United Kingdom)], E-mail: r.j.bibb@lboro.ac.uk; Winder, John [Health and Rehabilitation Sciences Research Institute, University of Ulster, Shore Road, Newtownabbey, BT37 0QB (United Kingdom)], E-mail: rj.winder@ulster.ac.uk

    2010-02-15

    This technical note aims to raise awareness amongst radiographers of the application of Computed Tomography data in the production of models using Rapid Prototyping technologies. It also aims to provide radiographers with recommendations that will assist them in providing three-dimensional Computed Tomography data that can fulfil the requirements of medical modelling. Potential problem areas in data acquisition and transfer are discussed and suggestions are given for methods that aim to avoid these.

  6. Cattaneo-Christov Heat Flux Model for MHD Three-Dimensional Flow of Maxwell Fluid over a Stretching Sheet.

    Directory of Open Access Journals (Sweden)

    Khansa Rubab

    Full Text Available This letter investigates the MHD three-dimensional flow of upper-convected Maxwell (UCM fluid over a bi-directional stretching surface by considering the Cattaneo-Christov heat flux model. This model has tendency to capture the characteristics of thermal relaxation time. The governing partial differential equations even after employing the boundary layer approximations are non linear. Accurate analytic solutions for velocity and temperature distributions are computed through well-known homotopy analysis method (HAM. It is noticed that velocity decreases and temperature rises when stronger magnetic field strength is accounted. Penetration depth of temperature is a decreasing function of thermal relaxation time. The analysis for classical Fourier heat conduction law can be obtained as a special case of the present work. To our knowledge, the Cattaneo-Christov heat flux model law for three-dimensional viscoelastic flow problem is just introduced here.

  7. Cattaneo-Christov Heat Flux Model for MHD Three-Dimensional Flow of Maxwell Fluid over a Stretching Sheet.

    Science.gov (United States)

    Rubab, Khansa; Mustafa, M

    2016-01-01

    This letter investigates the MHD three-dimensional flow of upper-convected Maxwell (UCM) fluid over a bi-directional stretching surface by considering the Cattaneo-Christov heat flux model. This model has tendency to capture the characteristics of thermal relaxation time. The governing partial differential equations even after employing the boundary layer approximations are non linear. Accurate analytic solutions for velocity and temperature distributions are computed through well-known homotopy analysis method (HAM). It is noticed that velocity decreases and temperature rises when stronger magnetic field strength is accounted. Penetration depth of temperature is a decreasing function of thermal relaxation time. The analysis for classical Fourier heat conduction law can be obtained as a special case of the present work. To our knowledge, the Cattaneo-Christov heat flux model law for three-dimensional viscoelastic flow problem is just introduced here.

  8. Computer Simulation Study of Human Locomotion with a Three-Dimensional Entire-Body Neuro-Musculo-Skeletal Model

    Science.gov (United States)

    Hase, Kazunori; Obuchi, Shuichi

    The three-dimensional entire-body neuro-musculo-skeletal model generating normal walking motion was modified to synthesize pathological walking including asymmetricalcompensatorymotions. Inadditiontotheneuronalparameters, musculo-skeletal parameters were employed as search parameters to represent affected musculo-skeletal systems. This model successfully generated pathological walking patterns, such as walking by a person with one lower extremity shorter than the other and walking by a person with an affected gluteus medius muscle. The simulated walking patterns were of the entire body, three-dimensional, continuous and asymmetrical, and demonstrated the characteristics of actual pathological walking. The walking model with an artificial foot also predicted not only the walking pattern adapted to the artificial foot but also the design parameters of the artificial foot adapted to the effective walking pattern simultaneously. Such simulation methods will establish a novel methodology that we call computational rehabilitation engineering.

  9. The surgical treatment of spinal deformity in children with myelomeningocele: the role of personalized three-dimensional printed models.

    Science.gov (United States)

    Karlin, Lawrence; Weinstock, Peter; Hedequist, Daniel; Prabhu, Sanjay P

    2017-07-01

    This study was carried out to evaluate the benefits of personalized three-dimensional printing as an aid to the performance of surgery for the correction of spinal deformity in children with myelomeningocele. We performed a retrospective review to include all such children for whom personalized three-dimensional spine models were used for surgical planning (group A) and compared them through subjective and objective criteria to a similar group that had no models (group B). The seven children in group A were younger and had more complex deformities than the 10 children in group B. The models provided a markedly improved appreciation of the complex anatomy and enabled the planning and performance of patient-specific spinal instrumentation that was secure and low profile. The efficiency of the surgery as measured by intraoperative fluoroscopy time and blood loss and the extent of the deformity correction was comparable or superior in group A.

  10. Application of Mathematical and Three-Dimensional Computer Modeling Tools in the Planning of Processes of Fuel and Energy Complexes

    Science.gov (United States)

    Aksenova, Olesya; Nikolaeva, Evgenia; Cehlár, Michal

    2017-11-01

    This work aims to investigate the effectiveness of mathematical and three-dimensional computer modeling tools in the planning of processes of fuel and energy complexes at the planning and design phase of a thermal power plant (TPP). A solution for purification of gas emissions at the design development phase of waste treatment systems is proposed employing mathematical and three-dimensional computer modeling - using the E-nets apparatus and the development of a 3D model of the future gas emission purification system. Which allows to visualize the designed result, to select and scientifically prove economically feasible technology, as well as to ensure the high environmental and social effect of the developed waste treatment system. The authors present results of a treatment of planned technological processes and the system for purifying gas emissions in terms of E-nets. using mathematical modeling in the Simulink application. What allowed to create a model of a device from the library of standard blocks and to perform calculations. A three-dimensional model of a system for purifying gas emissions has been constructed. It allows to visualize technological processes and compare them with the theoretical calculations at the design phase of a TPP and. if necessary, make adjustments.

  11. A three-dimensional mathematical model for the signal propagation on a neuron’s membrane.

    Directory of Open Access Journals (Sweden)

    Konstantinos eXylouris

    2015-07-01

    Full Text Available In order to be able to examine the extracellular potential's influence on network activity and to better understand dipole properties of the extracellular potential, we present and analyze a three-dimensional formulation of the cable equation which facilitates numeric simulations.When the neuron's intra- and extracellular space is assumed to be purely resistive (i.e. no free charges, the balance law of electric fluxes leads to the Laplace equation for the distribution of the intra- and extracellular potential. Moreover, the flux across the neuron's membrane is continuous. This observation already delivers the three dimensional cable equation. The coupling of the intra- and extracellular potential over the membrane is not trivial. Here, we present a continuous extension of the extracellular potential to the intracellular space and combine the resulting equation with the intracellular problem. This approach makes the system numerically accessible.On the basis of the assumed pure resistive intra- and extracellular spaces, we conclude that a cell's out-flux balances out completely. As a consequence neurons do not own any current monopoles. We present a rigorous analysis with spherical harmonics for the extracellular potential by approximating the neuron's geometry to a sphere. Furthermore, we show with first numeric simulations on idealized circumstances that the extracellular potential can have a decisive effect on network activity through ephaptic interactions.

  12. Improvement of three-dimensional mathematical model for the simulation of impact of high-speed metallic plates

    Science.gov (United States)

    Fortova, S. V.; Utkin, P. S.; Pronina, A. P.; Narkunas, T. S.; Shepelev, V. V.

    2018-01-01

    The work is devoted to the development of the authors software package Turbulence Problem Solver originally created for the study of three-dimensional problems of hydrodynamic instabilities. Mathematical model is based on the three-dimensional two-component Euler equations, the numerical algorithm is based on the grid-characteristics scheme of the second approximation order in space. The functionality of the mathematical model and the numerical algorithm of the package is extended to consider the problem of high-speed metallic plates impact. The detailed description of the proposed numerical approach is presented. The problem of high-speed metallic plates impact is solved using stiffened gas equation of state. The parameters of the equation of state are calibrated on the basis of computational results obtained with the use of wide-range equations of states for the metals.

  13. Experiments with three-dimensional riblets as an idealized model of shark skin

    Science.gov (United States)

    Bechert, D. W.; Bruse, M.; Hage, W.

    The skin of fast sharks exhibits a rather intriguing three-dimensional rib pattern. Therefore, the question arises whether or not such three-dimensional riblet surfaces may produce an equivalent or even higher drag reduction than straight two-dimensional riblets. Previously, the latter have been shown to reduce turbulent wall shear stress by up to 10%. Hence, the drag reduction by three-dimensional riblet surfaces is investigated experimentally. Our idealized 3D-surface consists of sharp-edged fin-shaped elements arranged in an interlocking array. The turbulent wall shear stress on this surface is measured using direct force balances. In a first attempt, wind tunnel experime