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Sample records for temperate environment shotgun

Paleogenomics in a temperate environment: shotgun sequencing from an extinct Mediterranean caprine.

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Oscar Ramírez

Full Text Available BACKGROUND: Numerous endemic mammals, including dwarf elephants, goats, hippos and deers, evolved in isolation in the Mediterranean islands during the Pliocene and Pleistocene. Most of them subsequently became extinct during the Holocene. Recently developed high-throughput sequencing technologies could provide a unique tool for retrieving genomic data from these extinct species, making it possible to study their evolutionary history and the genetic bases underlying their particular, sometimes unique, adaptations. METHODOLOGY/PRINCIPALS FINDINGS: A DNA extraction of a approximately 6,000 year-old bone sample from an extinct caprine (Myotragus balearicus from the Balearic Islands in the Western Mediterranean, has been subjected to shotgun sequencing with the GS FLX 454 platform. Only 0.27% of the resulting sequences, identified from alignments with the cow genome and comprising 15,832 nucleotides, with an average length of 60 nucleotides, proved to be endogenous. CONCLUSIONS: A phylogenetic tree generated with Myotragus sequences and those from other artiodactyls displays an identical topology to that generated from mitochondrial DNA data. Despite being in an unfavourable thermal environment, which explains the low yield of endogenous sequences, our study demonstrates that it is possible to obtain genomic data from extinct species from temperate regions.
Shotgun metagenomic data streams: surfing without fear

Energy Technology Data Exchange (ETDEWEB)

Berendzen, Joel R [Los Alamos National Laboratory

2010-12-06

Timely information about bio-threat prevalence, consequence, propagation, attribution, and mitigation is needed to support decision-making, both routinely and in a crisis. One DNA sequencer can stream 25 Gbp of information per day, but sampling strategies and analysis techniques are needed to turn raw sequencing power into actionable knowledge. Shotgun metagenomics can enable biosurveillance at the level of a single city, hospital, or airplane. Metagenomics characterizes viruses and bacteria from complex environments such as soil, air filters, or sewage. Unlike targeted-primer-based sequencing, shotgun methods are not blind to sequences that are truly novel, and they can measure absolute prevalence. Shotgun metagenomic sampling can be non-invasive, efficient, and inexpensive while being informative. We have developed analysis techniques for shotgun metagenomic sequencing that rely upon phylogenetic signature patterns. They work by indexing local sequence patterns in a manner similar to web search engines. Our methods are laptop-fast and favorable scaling properties ensure they will be sustainable as sequencing methods grow. We show examples of application to soil metagenomic samples.
Suicide with Shotgun: A Case Report

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Ali Yildirim

2011-03-01

Full Text Available Suicide appears to be a major public health problem in our country and all over the World. Suicide methods will vary between the various communities the most common types of suicides are hanging, using chemicals and using firearms (pistol, shotgun. Connected with easy availability of shotguns suicide cases with using shotgun is significantly increasing in recent years. In our study, suicide with a shotgun, are evaluated in terms of shooting range and its features, originate, area of suicide, crime scene, sex and age. [J Contemp Med 2011; 1(1.000: 29-34
Staying cool: preadaptation to temperate climates required for colonising tropical alpine-like environments

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Berit Gehrke

2018-04-01

Full Text Available Plant species tend to retain their ancestral ecology, responding to temporal, geographic and climatic changes by tracking suitable habitats rather than adapting to novel conditions. Nevertheless, transitions into different environments or biomes still seem to be common. Especially intriguing are the tropical alpine-like areas found on only the highest mountainous regions surrounded by tropical environments. Tropical mountains are hotspots of biodiversity, often with striking degrees of endemism at higher elevations. On these mountains, steep environmental gradients and high habitat heterogeneity within small spaces coincide with astounding species diversity of great conservation value. The analysis presented here shows that the importance of in situ speciation in tropical alpine-like areas has been underestimated. Additionally and contrary to widely held opinion, the impact of dispersal from other regions with alpine-like environments is relatively minor compared to that of immigration from other biomes with a temperate (but not alpine-like climate. This suggests that establishment in tropical alpine-like regions is favoured by preadaptation to a temperate, especially aseasonal, freezing regime such as the cool temperate climate regions in the Tropics. Furthermore, emigration out of an alpine-like environment is generally rare, suggesting that alpine-like environments – at least tropical ones – are species sinks.
"Shotgunning" as an illicit drug smoking practice.

Science.gov (United States)

Perlman, D C; Perkins, M P; Paone, D; Kochems, L; Salomon, N; Friedmann, P; Des Jarlais, D C

1997-01-01

There has been a rise in illicit drug smoking in the United States. "Shotgunning" drugs (or "doing a shotgun") refers to the practice of inhaling smoke and then exhaling it into another individual's mouth, a practice with the potential for the efficient transmission of respiratory pathogens. Three hundred fifty-four drug users (239 from a syringe exchange and 115 from a drug detoxification program) were interviewed about shotgunning and screened for tuberculosis (TB). Fifty-nine (17%; 95% CI 12.9%-20.9%) reported shotgunning while smoking crack cocaine (68%), marijuana (41%), or heroin (2%). In multivariate analysis, age alcohol to intoxication (OR 2.2, 95% CI 1.1-4.3), having engaged in high-risk sex (OR 2.6, 95% CI 1.04-6.7), and crack use (OR 6.0, 95% CI 3.0-12) were independently associated with shotgunning. Shotgunning is a frequent drug smoking practice with the potential to transmit respiratory pathogens, underscoring the need for education of drug users about the risks of specific drug use practices, and the ongoing need for TB control among active drug users.
Entrance, exit, and reentrance of one shot with a shotgun

DEFF Research Database (Denmark)

Gulmann, C; Hougen, H P

1999-01-01

The case being reported is one of a homicidal shotgun fatality with an unusual wound pattern. A 34-year-old man was shot at close range with a 12-gauge shotgun armed with No. 5 birdshot ammunition. The shot entered the left axillary region, exited through the left infraclavicular region, and ther......The case being reported is one of a homicidal shotgun fatality with an unusual wound pattern. A 34-year-old man was shot at close range with a 12-gauge shotgun armed with No. 5 birdshot ammunition. The shot entered the left axillary region, exited through the left infraclavicular region...
Playing by the rules? Phenotypic adaptation to temperate environments in an American marsupial

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Harrigan, Ryan J.; Wayne, Robert K.

2018-01-01

Phenotypic variation along environmental gradients can provide evidence suggesting local adaptation has shaped observed morphological disparities. These differences, in traits such as body and extremity size, as well as skin and coat pigmentation, may affect the overall fitness of individuals in their environments. The Virginia opossum (Didelphis virginiana) is a marsupial that shows phenotypic variation across its range, one that has recently expanded into temperate environments. It is unknown, however, whether the variation observed in the species fits adaptive ecogeographic patterns, or if phenotypic change is associated with any environmental factors. Using phenotypic measurements of over 300 museum specimens of Virginia opossum, collected throughout its distribution range, we applied regression analysis to determine if phenotypes change along a latitudinal gradient. Then, using predictors from remote-sensing databases and a random forest algorithm, we tested environmental models to find the most important variables driving the phenotypic variation. We found that despite the recent expansion into temperate environments, the phenotypic variation in the Virginia opossum follows a latitudinal gradient fitting three adaptive ecogeographic patterns codified under Bergmann’s, Allen’s and Gloger’s rules. Temperature seasonality was an important predictor of body size variation, with larger opossums occurring at high latitudes with more seasonal environments. Annual mean temperature predicted important variation in extremity size, with smaller extremities found in northern populations. Finally, we found that precipitation and temperature seasonality as well as low temperatures were strong environmental predictors of skin and coat pigmentation variation; darker opossums are distributed at low latitudes in warmer environments with higher precipitation seasonality. These results indicate that the adaptive mechanisms underlying the variation in body size, extremity
Playing by the rules? Phenotypic adaptation to temperate environments in an American marsupial

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Sergio F. Nigenda-Morales

2018-03-01

Full Text Available Phenotypic variation along environmental gradients can provide evidence suggesting local adaptation has shaped observed morphological disparities. These differences, in traits such as body and extremity size, as well as skin and coat pigmentation, may affect the overall fitness of individuals in their environments. The Virginia opossum (Didelphis virginiana is a marsupial that shows phenotypic variation across its range, one that has recently expanded into temperate environments. It is unknown, however, whether the variation observed in the species fits adaptive ecogeographic patterns, or if phenotypic change is associated with any environmental factors. Using phenotypic measurements of over 300 museum specimens of Virginia opossum, collected throughout its distribution range, we applied regression analysis to determine if phenotypes change along a latitudinal gradient. Then, using predictors from remote-sensing databases and a random forest algorithm, we tested environmental models to find the most important variables driving the phenotypic variation. We found that despite the recent expansion into temperate environments, the phenotypic variation in the Virginia opossum follows a latitudinal gradient fitting three adaptive ecogeographic patterns codified under Bergmann’s, Allen’s and Gloger’s rules. Temperature seasonality was an important predictor of body size variation, with larger opossums occurring at high latitudes with more seasonal environments. Annual mean temperature predicted important variation in extremity size, with smaller extremities found in northern populations. Finally, we found that precipitation and temperature seasonality as well as low temperatures were strong environmental predictors of skin and coat pigmentation variation; darker opossums are distributed at low latitudes in warmer environments with higher precipitation seasonality. These results indicate that the adaptive mechanisms underlying the variation in
Novel advances in shotgun lipidomics for biology and medicine.

Science.gov (United States)

Wang, Miao; Wang, Chunyan; Han, Rowland H; Han, Xianlin

2016-01-01

The field of lipidomics, as coined in 2003, has made profound advances and been rapidly expanded. The mass spectrometry-based strategies of this analytical methodology-oriented research discipline for lipid analysis are largely fallen into three categories: direct infusion-based shotgun lipidomics, liquid chromatography-mass spectrometry-based platforms, and matrix-assisted laser desorption/ionization mass spectrometry-based approaches (particularly in imagining lipid distribution in tissues or cells). This review focuses on shotgun lipidomics. After briefly introducing its fundamentals, the major materials of this article cover its recent advances. These include the novel methods of lipid extraction, novel shotgun lipidomics strategies for identification and quantification of previously hardly accessible lipid classes and molecular species including isomers, and novel tools for processing and interpretation of lipidomics data. Representative applications of advanced shotgun lipidomics for biological and biomedical research are also presented in this review. We believe that with these novel advances in shotgun lipidomics, this approach for lipid analysis should become more comprehensive and high throughput, thereby greatly accelerating the lipidomics field to substantiate the aberrant lipid metabolism, signaling, trafficking, and homeostasis under pathological conditions and their underpinning biochemical mechanisms. Copyright © 2015 Elsevier B.V. All rights reserved.
Shotgun protein sequencing.

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Faulon, Jean-Loup Michel; Heffelfinger, Grant S.

2009-06-01

A novel experimental and computational technique based on multiple enzymatic digestion of a protein or protein mixture that reconstructs protein sequences from sequences of overlapping peptides is described in this SAND report. This approach, analogous to shotgun sequencing of DNA, is to be used to sequence alternative spliced proteins, to identify post-translational modifications, and to sequence genetically engineered proteins.
Physical exercise performance in temperate and warm environments is decreased by an impaired arterial baroreflex.

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Washington Pires

Full Text Available The present study aimed to investigate whether running performance in different environments is dependent on intact arterial baroreceptor reflexes. We also assessed the exercise-induced cardiovascular and thermoregulatory responses in animals lacking arterial baroafferent signals. To accomplish these goals, male Wistar rats were subjected to sinoaortic denervation (SAD or sham surgery (SHAM and had a catheter implanted into the ascending aorta to record arterial pressure and a telemetry sensor implanted in the abdominal cavity to record core temperature. After recovering from these surgeries, the animals were subjected to constant- or incremental-speed exercises performed until the voluntary interruption of effort under temperate (25° C and warm (35° C conditions. During the constant-speed exercises, the running time until the rats were fatigued was shorter in SAD rats in both environments. Although the core temperature was not significantly different between the groups, tail skin temperature was higher in SAD rats under temperate conditions. The denervated rats also displayed exaggerated increases in blood pressure and double product compared with the SHAM rats; in particular, in the warm environment, these exaggerated cardiovascular responses in the SAD rats persisted until they were fatigued. These SAD-mediated changes occurred in parallel with increased variability in the very low and low components of the systolic arterial pressure power spectrum. The running performance was also affected by SAD during the incremental-speed exercises, with the maximal speed attained being decreased by approximately 20% in both environments. Furthermore, at the maximal power output tolerated during the incremental exercises, the mean arterial pressure, heart rate and double product were exaggerated in the SAD relative to SHAM rats. In conclusion, the chronic absence of the arterial baroafferents accelerates exercise fatigue in temperate and warm
Shotgun pyrosequencing metagenomic analyses of dusts from swine confinement and grain facilities.

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Boissy, Robert J; Romberger, Debra J; Roughead, William A; Weissenburger-Moser, Lisa; Poole, Jill A; LeVan, Tricia D

2014-01-01

Inhalation of agricultural dusts causes inflammatory reactions and symptoms such as headache, fever, and malaise, which can progress to chronic airway inflammation and associated diseases, e.g. asthma, chronic bronchitis, chronic obstructive pulmonary disease, and hypersensitivity pneumonitis. Although in many agricultural environments feed particles are the major constituent of these dusts, the inflammatory responses that they provoke are likely attributable to particle-associated bacteria, archaebacteria, fungi, and viruses. In this study, we performed shotgun pyrosequencing metagenomic analyses of DNA from dusts from swine confinement facilities or grain elevators, with comparisons to dusts from pet-free households. DNA sequence alignment showed that 19% or 62% of shotgun pyrosequencing metagenomic DNA sequence reads from swine facility or household dusts, respectively, were of swine or human origin, respectively. In contrast only 2% of such reads from grain elevator dust were of mammalian origin. These metagenomic shotgun reads of mammalian origin were excluded from our analyses of agricultural dust microbiota. The ten most prevalent bacterial taxa identified in swine facility compared to grain elevator or household dust were comprised of 75%, 16%, and 42% gram-positive organisms, respectively. Four of the top five swine facility dust genera were assignable (Clostridium, Lactobacillus, Ruminococcus, and Eubacterium, ranging from 4% to 19% relative abundance). The relative abundances of these four genera were lower in dust from grain elevators or pet-free households. These analyses also highlighted the predominance in swine facility dust of Firmicutes (70%) at the phylum level, Clostridia (44%) at the Class level, and Clostridiales at the Order level (41%). In summary, shotgun pyrosequencing metagenomic analyses of agricultural dusts show that they differ qualitatively and quantitatively at the level of microbial taxa present, and that the bioinformatic analyses
Shotgun pyrosequencing metagenomic analyses of dusts from swine confinement and grain facilities.

Directory of Open Access Journals (Sweden)

Robert J Boissy

Full Text Available Inhalation of agricultural dusts causes inflammatory reactions and symptoms such as headache, fever, and malaise, which can progress to chronic airway inflammation and associated diseases, e.g. asthma, chronic bronchitis, chronic obstructive pulmonary disease, and hypersensitivity pneumonitis. Although in many agricultural environments feed particles are the major constituent of these dusts, the inflammatory responses that they provoke are likely attributable to particle-associated bacteria, archaebacteria, fungi, and viruses. In this study, we performed shotgun pyrosequencing metagenomic analyses of DNA from dusts from swine confinement facilities or grain elevators, with comparisons to dusts from pet-free households. DNA sequence alignment showed that 19% or 62% of shotgun pyrosequencing metagenomic DNA sequence reads from swine facility or household dusts, respectively, were of swine or human origin, respectively. In contrast only 2% of such reads from grain elevator dust were of mammalian origin. These metagenomic shotgun reads of mammalian origin were excluded from our analyses of agricultural dust microbiota. The ten most prevalent bacterial taxa identified in swine facility compared to grain elevator or household dust were comprised of 75%, 16%, and 42% gram-positive organisms, respectively. Four of the top five swine facility dust genera were assignable (Clostridium, Lactobacillus, Ruminococcus, and Eubacterium, ranging from 4% to 19% relative abundance. The relative abundances of these four genera were lower in dust from grain elevators or pet-free households. These analyses also highlighted the predominance in swine facility dust of Firmicutes (70% at the phylum level, Clostridia (44% at the Class level, and Clostridiales at the Order level (41%. In summary, shotgun pyrosequencing metagenomic analyses of agricultural dusts show that they differ qualitatively and quantitatively at the level of microbial taxa present, and that the
WGSQuikr: fast whole-genome shotgun metagenomic classification.

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David Koslicki

Full Text Available With the decrease in cost and increase in output of whole-genome shotgun technologies, many metagenomic studies are utilizing this approach in lieu of the more traditional 16S rRNA amplicon technique. Due to the large number of relatively short reads output from whole-genome shotgun technologies, there is a need for fast and accurate short-read OTU classifiers. While there are relatively fast and accurate algorithms available, such as MetaPhlAn, MetaPhyler, PhyloPythiaS, and PhymmBL, these algorithms still classify samples in a read-by-read fashion and so execution times can range from hours to days on large datasets. We introduce WGSQuikr, a reconstruction method which can compute a vector of taxonomic assignments and their proportions in the sample with remarkable speed and accuracy. We demonstrate on simulated data that WGSQuikr is typically more accurate and up to an order of magnitude faster than the aforementioned classification algorithms. We also verify the utility of WGSQuikr on real biological data in the form of a mock community. WGSQuikr is a Whole-Genome Shotgun QUadratic, Iterative, K-mer based Reconstruction method which extends the previously introduced 16S rRNA-based algorithm Quikr. A MATLAB implementation of WGSQuikr is available at: http://sourceforge.net/projects/wgsquikr.
Comparison of atmosphere/aquatic environment concentration ratio of volatile chlorinated hydrocarbons between temperate regions and Antarctica.

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Zoccolillo, Lelio; Amendola, Luca; Insogna, Susanna

2009-09-01

For the purpose of understanding the transport and deposition mechanisms and the air-water distribution of some volatile chlorinated hydrocarbons (VCHCs), their atmosphere/aquatic environment concentration ratio was evaluated. In addition, for the purpose of differentiating VCHC behaviour in a temperate climate from its behaviour in a polar climate, the atmosphere/aquatic environment concentration ratio evaluated in matrices from temperate zones was compared with the concentration ratio evaluated in Antarctic matrices. In order to perform air samplings also at rigid Antarctic temperatures, the sampling apparatus, consisting of a diaphragm pump and canisters, was suitably modified. Chloroform, 1,1,1-trichloroethane, tetrachloromethane, 1,1,2-trichloroethylene and tetrachloroethylene were measured in air, water and snow using specific techniques composed of a purpose-made cryofocusing-trap-injector (for air samples) and a modified purge-and-trap injector (for aqueous samples) coupled to a gas chromatograph with mass spectrometric detection operating in selected ion monitoring mode. The VCHCs were retrieved in all the investigated matrices, both Italian and Antarctic, with concentrations varying from tens to thousands of ng m(-3) in air and from digits to hundreds of ng kg(-1) in water and snow. The atmosphere/aquatic environment concentration ratios were always found to be lower than 1. In particular, the Italian air/water concentration ratios were smaller than the Antarctic ones, by reason of the higher atmospheric photochemical activity in temperate zones. On the other hand, the Antarctic air/snow concentration ratios proved to be largely in favour of snow with respect to the Italian ratios, thus corroborating the hypothesis of a more efficient VCHC deposition mechanism and accumulation on Antarctic snow.
High-throughput shotgun lipidomics by quadrupole time-of-flight mass spectrometry

DEFF Research Database (Denmark)

Ståhlman, Marcus; Ejsing, Christer S.; Tarasov, Kirill

2009-01-01

Technological advances in mass spectrometry and meticulous method development have produced several shotgun lipidomic approaches capable of characterizing lipid species by direct analysis of total lipid extracts. Shotgun lipidomics by hybrid quadrupole time-of-flight mass spectrometry allows...... the absolute quantification of hundreds of molecular glycerophospholipid species, glycerolipid species, sphingolipid species and sterol lipids. Future applications in clinical cohort studies demand detailed lipid molecule information and the application of high-throughput lipidomics platforms. In this review...... we describe a novel high-throughput shotgun lipidomic platform based on 96-well robot-assisted lipid extraction, automated sample infusion by mircofluidic-based nanoelectrospray ionization, and quantitative multiple precursor ion scanning analysis on a quadrupole time-of-flight mass spectrometer...
Shotgun approaches to gait analysis : insights & limitations

NARCIS (Netherlands)

Kaptein, Ronald G.; Wezenberg, Daphne; IJmker, Trienke; Houdijk, Han; Beek, Peter J.; Lamoth, Claudine J. C.; Daffertshofer, Andreas

2014-01-01

Background: Identifying features for gait classification is a formidable problem. The number of candidate measures is legion. This calls for proper, objective criteria when ranking their relevance. Methods: Following a shotgun approach we determined a plenitude of kinematic and physiological gait
metaBIT, an integrative and automated metagenomic pipeline for analysing microbial profiles from high-throughput sequencing shotgun data

DEFF Research Database (Denmark)

Louvel, Guillaume; Der Sarkissian, Clio; Hanghøj, Kristian Ebbesen

2016-01-01

-throughput DNA sequencing (HTS). Here, we develop metaBIT, an open-source computational pipeline automatizing routine microbial profiling of shotgun HTS data. Customizable by the user at different stringency levels, it performs robust taxonomy-based assignment and relative abundance calculation of microbial taxa......, as well as cross-sample statistical analyses of microbial diversity distributions. We demonstrate the versatility of metaBIT within a range of published HTS data sets sampled from the environment (soil and seawater) and the human body (skin and gut), but also from archaeological specimens. We present......-friendly profiling of the microbial DNA present in HTS shotgun data sets. The applications of metaBIT are vast, from monitoring of laboratory errors and contaminations, to the reconstruction of past and present microbiota, and the detection of candidate species, including pathogens....
Whole genome shotgun sequencing of Indian strains of Streptococcus agalactiae

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Balaji Veeraraghavan

2017-12-01

Full Text Available Group B streptococcus is known as a leading cause of neonatal infections in developing countries. The present study describes the whole genome shotgun sequences of four Group B Streptococcus (GBS isolates. Molecular data on clonality is lacking for GBS in India. The present genome report will add important information on the scarce genome data of GBS and will help in deriving comparative genome studies of GBS isolates at global level. This Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession numbers NHPL00000000 – NHPO00000000.
GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.

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Carvalho, Paulo C; Fischer, Juliana Sg; Chen, Emily I; Domont, Gilberto B; Carvalho, Maria Gc; Degrave, Wim M; Yates, John R; Barbosa, Valmir C

2009-02-24

Spectral counting is a shotgun proteomics approach comprising the identification and relative quantitation of thousands of proteins in complex mixtures. However, this strategy generates bewildering amounts of data whose biological interpretation is a challenge. Here we present a new algorithm, termed GO Explorer (GOEx), that leverages the gene ontology (GO) to aid in the interpretation of proteomic data. GOEx stands out because it combines data from protein fold changes with GO over-representation statistics to help draw conclusions. Moreover, it is tightly integrated within the PatternLab for Proteomics project and, thus, lies within a complete computational environment that provides parsers and pattern recognition tools designed for spectral counting. GOEx offers three independent methods to query data: an interactive directed acyclic graph, a specialist mode where key words can be searched, and an automatic search. Its usefulness is demonstrated by applying it to help interpret the effects of perillyl alcohol, a natural chemotherapeutic agent, on glioblastoma multiform cell lines (A172). We used a new multi-surfactant shotgun proteomic strategy and identified more than 2600 proteins; GOEx pinpointed key sets of differentially expressed proteins related to cell cycle, alcohol catabolism, the Ras pathway, apoptosis, and stress response, to name a few. GOEx facilitates organism-specific studies by leveraging GO and providing a rich graphical user interface. It is a simple to use tool, specialized for biologists who wish to analyze spectral counting data from shotgun proteomics. GOEx is available at http://pcarvalho.com/patternlab.

GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data

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Domont Gilberto B

2009-02-01

Full Text Available Abstract Background Spectral counting is a shotgun proteomics approach comprising the identification and relative quantitation of thousands of proteins in complex mixtures. However, this strategy generates bewildering amounts of data whose biological interpretation is a challenge. Results Here we present a new algorithm, termed GO Explorer (GOEx, that leverages the gene ontology (GO to aid in the interpretation of proteomic data. GOEx stands out because it combines data from protein fold changes with GO over-representation statistics to help draw conclusions. Moreover, it is tightly integrated within the PatternLab for Proteomics project and, thus, lies within a complete computational environment that provides parsers and pattern recognition tools designed for spectral counting. GOEx offers three independent methods to query data: an interactive directed acyclic graph, a specialist mode where key words can be searched, and an automatic search. Its usefulness is demonstrated by applying it to help interpret the effects of perillyl alcohol, a natural chemotherapeutic agent, on glioblastoma multiform cell lines (A172. We used a new multi-surfactant shotgun proteomic strategy and identified more than 2600 proteins; GOEx pinpointed key sets of differentially expressed proteins related to cell cycle, alcohol catabolism, the Ras pathway, apoptosis, and stress response, to name a few. Conclusion GOEx facilitates organism-specific studies by leveraging GO and providing a rich graphical user interface. It is a simple to use tool, specialized for biologists who wish to analyze spectral counting data from shotgun proteomics. GOEx is available at http://pcarvalho.com/patternlab.
Tempered fractional calculus

Energy Technology Data Exchange (ETDEWEB)

Sabzikar, Farzad, E-mail: sabzika2@stt.msu.edu [Department of Statistics and Probability, Michigan State University, East Lansing, MI 48823 (United States); Meerschaert, Mark M., E-mail: mcubed@stt.msu.edu [Department of Statistics and Probability, Michigan State University, East Lansing, MI 48823 (United States); Chen, Jinghua, E-mail: cjhdzdz@163.com [School of Sciences, Jimei University, Xiamen, Fujian, 361021 (China)

2015-07-15

Fractional derivatives and integrals are convolutions with a power law. Multiplying by an exponential factor leads to tempered fractional derivatives and integrals. Tempered fractional diffusion equations, where the usual second derivative in space is replaced by a tempered fractional derivative, govern the limits of random walk models with an exponentially tempered power law jump distribution. The limiting tempered stable probability densities exhibit semi-heavy tails, which are commonly observed in finance. Tempered power law waiting times lead to tempered fractional time derivatives, which have proven useful in geophysics. The tempered fractional derivative or integral of a Brownian motion, called a tempered fractional Brownian motion, can exhibit semi-long range dependence. The increments of this process, called tempered fractional Gaussian noise, provide a useful new stochastic model for wind speed data. A tempered fractional difference forms the basis for numerical methods to solve tempered fractional diffusion equations, and it also provides a useful new correlation model in time series.
Tempered fractional calculus

Science.gov (United States)

Sabzikar, Farzad; Meerschaert, Mark M.; Chen, Jinghua

2015-07-01

Fractional derivatives and integrals are convolutions with a power law. Multiplying by an exponential factor leads to tempered fractional derivatives and integrals. Tempered fractional diffusion equations, where the usual second derivative in space is replaced by a tempered fractional derivative, govern the limits of random walk models with an exponentially tempered power law jump distribution. The limiting tempered stable probability densities exhibit semi-heavy tails, which are commonly observed in finance. Tempered power law waiting times lead to tempered fractional time derivatives, which have proven useful in geophysics. The tempered fractional derivative or integral of a Brownian motion, called a tempered fractional Brownian motion, can exhibit semi-long range dependence. The increments of this process, called tempered fractional Gaussian noise, provide a useful new stochastic model for wind speed data. A tempered fractional difference forms the basis for numerical methods to solve tempered fractional diffusion equations, and it also provides a useful new correlation model in time series.
Tempered fractional calculus

International Nuclear Information System (INIS)

Sabzikar, Farzad; Meerschaert, Mark M.; Chen, Jinghua

2015-01-01

Fractional derivatives and integrals are convolutions with a power law. Multiplying by an exponential factor leads to tempered fractional derivatives and integrals. Tempered fractional diffusion equations, where the usual second derivative in space is replaced by a tempered fractional derivative, govern the limits of random walk models with an exponentially tempered power law jump distribution. The limiting tempered stable probability densities exhibit semi-heavy tails, which are commonly observed in finance. Tempered power law waiting times lead to tempered fractional time derivatives, which have proven useful in geophysics. The tempered fractional derivative or integral of a Brownian motion, called a tempered fractional Brownian motion, can exhibit semi-long range dependence. The increments of this process, called tempered fractional Gaussian noise, provide a useful new stochastic model for wind speed data. A tempered fractional difference forms the basis for numerical methods to solve tempered fractional diffusion equations, and it also provides a useful new correlation model in time series
The geology of selected peat-forming environments in temperate and tropical latitudes

Science.gov (United States)

Cameron, C.C.; Palmer, C.A.; Esterle, J.S.

1990-01-01

We studied peat in several geologic and climatic settings: (1) a glaciated terrain in cold-temperate Maine and Minnesota, U.S.A.; (2) an island in a temperate maritime climate in the Atlantic Ocean off the coast of Maine, U.S.A., where sea level is rising rapidly and changing the environment of peat accumulation; (3) swamps along the warm-temperate U.S. Atlantic and Gulf Coastal Plains, where sea level has changed often, thus creating sites for accumulation; and (4) in a tropical climate along the coast of Sarawak, Malaysia, and the delta of the Batang Hari River, Sumatra, Indonesia (Figs. 1 and 2). With the exception of the deposits on the Atlantic and Gulf Coastal Plains, most of the deposits described are domed bogs in which peat accumulation continued above the surface of the surrounding soil. The bogs of the U.S. Atlantic and Gulf Coastal Plains have almost level surfaces. All domed bogs are not entirely ombrotrophic (watered only from precipitation); multidomed bogs that rise from irregular or hilly surfaces may be crossed by streams that supply water to the bogs. The geologic processes or organic sedimentation, namely terrestrialization and paludification, are similar in all peat deposits considered here. Differences in geomorphology affecting the quantity and that quality of peat that has ash contents of less than 25%, which are desirable for commercial purposes, depend chiefly on: (1) high humidity, which is favorable to luxuriant growth of peat-forming vegetation; (2) a depositional setting that permits extensive accumulation relatively free from inorganic contamination from sea water and streams and from dust and volcanic ash; and (3) a stable regional water table that controls the rate of decomposition under aerobic conditions and protects the deposit against the ravages of fire. Differences in peat textures are due to the type of vegetation and to the degree of decomposition. The rate of decomposition is largely the result of the amount of oxidation
Bioinformatics for whole-genome shotgun sequencing of microbial communities.

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Kevin Chen

2005-07-01

Full Text Available The application of whole-genome shotgun sequencing to microbial communities represents a major development in metagenomics, the study of uncultured microbes via the tools of modern genomic analysis. In the past year, whole-genome shotgun sequencing projects of prokaryotic communities from an acid mine biofilm, the Sargasso Sea, Minnesota farm soil, three deep-sea whale falls, and deep-sea sediments have been reported, adding to previously published work on viral communities from marine and fecal samples. The interpretation of this new kind of data poses a wide variety of exciting and difficult bioinformatics problems. The aim of this review is to introduce the bioinformatics community to this emerging field by surveying existing techniques and promising new approaches for several of the most interesting of these computational problems.
A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation.

Science.gov (United States)

Sternes, Peter R; Lee, Danna; Kutyna, Dariusz R; Borneman, Anthony R

2017-07-01

Wine is a complex beverage, comprising hundreds of metabolites produced through the action of yeasts and bacteria in fermenting grape must. Commercially, there is now a growing trend away from using wine yeast (Saccharomyces) starter cultures, toward the historic practice of uninoculated or "wild" fermentation, where the yeasts and bacteria associated with the grapes and/or winery perform the fermentation. It is the varied metabolic contributions of these numerous non-Saccharomyces species that are thought to impart complexity and desirable taste and aroma attributes to wild ferments in comparison to their inoculated counterparts. To map the microflora of spontaneous fermentation, metagenomic techniques were employed to characterize and monitor the progression of fungal species in 5 different wild fermentations. Both amplicon-based ribosomal DNA internal transcribed spacer (ITS) phylotyping and shotgun metagenomics were used to assess community structure across different stages of fermentation. While providing a sensitive and highly accurate means of characterizing the wine microbiome, the shotgun metagenomic data also uncovered a significant overabundance bias in the ITS phylotyping abundance estimations for the common non-Saccharomyces wine yeast genus Metschnikowia. By identifying biases such as that observed for Metschnikowia, abundance measurements from future ITS phylotyping datasets can be corrected to provide more accurate species representation. Ultimately, as more shotgun metagenomic and single-strain de novo assemblies for key wine species become available, the accuracy of both ITS-amplicon and shotgun studies will greatly increase, providing a powerful methodology for deciphering the influence of the microbial community on the wine flavor and aroma. © The Authors 2017. Published by Oxford University Press.
Comparative growth analysis of cool- and warm-season grasses in a cool-temperate environment

International Nuclear Information System (INIS)

Belesky, D.P.; Fedders, J.M.

1995-01-01

Using both cool-season (C3) and warm-season (C4) species is a viable means of optimizing herbage productivity over varying climatic conditions in temperate environments. Despite well-documented differences in water, N, and radiation use, no consistent evidence demonstrates productivity differences among C3 and C4 perennial grass species under identical management. A field study was conducted to determine relative growth rates (RGR), nitrogen productivity (NP), and mean radiation productivity (RP) (dry matter production as a function of incident radiation) of cool- and warm-season grasses managed identically. Results were used to identify management practices thd could lead to optimal productivity in combinations or mixtures of cool- and warm-season grasses. Dry matter yields of warm-season grasses equaled or surpassed those of cool-season grasses, despite a 40% shorter growth interval. Certain cool- and warm-season grasses appear to be suitable for use in mixtures, based on distribution of herbage production; however, actual compatibility may be altered by defoliation management. Relative growth rates varied among years and were about 40% lower for canopies clipped to a 10-cm residue height each time 20-cm of growth accumulated compared with other treatments. The RGR of warm-season grasses was twice that of cool-season grasses Nitrogen productivity (g DM g-1 N d -1) and mean radiation productivity (g DM MJ-1) for warm-season grasses was also more than twice that of cool-season grasses. Radiation productivity of cool-season grasses was dependent on N, while this was not always the case for warm-season grasses. The superior production capability of certain warm-season compared with cool-season grasses in a cool-temperate environment can be sustained under a range of defoliation treatments and demonstrates suitability for use in frequently defoliated situations
Analysis of pig serum proteins based on shotgun liquid ...

African Journals Online (AJOL)

Recent advances in proteomics technologies have opened up significant opportunities for future applications. We used shotgun liquid chromatography, coupled with tandem mass spectrometry (LC-MS/MS) to determine the proteome profile of healthy pig serum. Samples of venous blood were collected and subjected to ...
A high-throughput shotgun mutagenesis approach to mapping B-cell antibody epitopes.

Science.gov (United States)

Davidson, Edgar; Doranz, Benjamin J

2014-09-01

Characterizing the binding sites of monoclonal antibodies (mAbs) on protein targets, their 'epitopes', can aid in the discovery and development of new therapeutics, diagnostics and vaccines. However, the speed of epitope mapping techniques has not kept pace with the increasingly large numbers of mAbs being isolated. Obtaining detailed epitope maps for functionally relevant antibodies can be challenging, particularly for conformational epitopes on structurally complex proteins. To enable rapid epitope mapping, we developed a high-throughput strategy, shotgun mutagenesis, that enables the identification of both linear and conformational epitopes in a fraction of the time required by conventional approaches. Shotgun mutagenesis epitope mapping is based on large-scale mutagenesis and rapid cellular testing of natively folded proteins. Hundreds of mutant plasmids are individually cloned, arrayed in 384-well microplates, expressed within human cells, and tested for mAb reactivity. Residues are identified as a component of a mAb epitope if their mutation (e.g. to alanine) does not support candidate mAb binding but does support that of other conformational mAbs or allows full protein function. Shotgun mutagenesis is particularly suited for studying structurally complex proteins because targets are expressed in their native form directly within human cells. Shotgun mutagenesis has been used to delineate hundreds of epitopes on a variety of proteins, including G protein-coupled receptor and viral envelope proteins. The epitopes mapped on dengue virus prM/E represent one of the largest collections of epitope information for any viral protein, and results are being used to design better vaccines and drugs. © 2014 John Wiley & Sons Ltd.
The temporal analysis of yeast exponential phase using shotgun proteomics as a fermentation monitoring technique.

Science.gov (United States)

Huang, Eric L; Orsat, Valérie; Shah, Manesh B; Hettich, Robert L; VerBerkmoes, Nathan C; Lefsrud, Mark G

2012-09-18

System biology and bioprocess technology can be better understood using shotgun proteomics as a monitoring system during the fermentation. We demonstrated a shotgun proteomic method to monitor the temporal yeast proteome in early, middle and late exponential phases. Our study identified a total of 1389 proteins combining all 2D-LC-MS/MS runs. The temporal Saccharomyces cerevisiae proteome was enriched with proteolysis, radical detoxification, translation, one-carbon metabolism, glycolysis and TCA cycle. Heat shock proteins and proteins associated with oxidative stress response were found throughout the exponential phase. The most abundant proteins observed were translation elongation factors, ribosomal proteins, chaperones and glycolytic enzymes. The high abundance of the H-protein of the glycine decarboxylase complex (Gcv3p) indicated the availability of glycine in the environment. We observed differentially expressed proteins and the induced proteins at mid-exponential phase were involved in ribosome biogenesis, mitochondria DNA binding/replication and transcriptional activator. Induction of tryptophan synthase (Trp5p) indicated the abundance of tryptophan during the fermentation. As fermentation progressed toward late exponential phase, a decrease in cell proliferation was implied from the repression of ribosomal proteins, transcription coactivators, methionine aminopeptidase and translation-associated proteins. Copyright © 2012 Elsevier B.V. All rights reserved.
Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS.

Science.gov (United States)

Takahashi, Daisuke; Li, Bin; Nakayama, Takato; Kawamura, Yukio; Uemura, Matsuo

2014-01-01

Shotgun proteomics allows the comprehensive analysis of proteins extracted from plant cells, subcellular organelles, and membranes. Previously, two-dimensional gel electrophoresis-based proteomics was used for mass spectrometric analysis of plasma membrane proteins. In order to get comprehensive proteome profiles of the plasma membrane including highly hydrophobic proteins with a number of transmembrane domains, a mass spectrometry-based shotgun proteomics method using nano-LC-MS/MS for proteins from the plasma membrane proteins and plasma membrane microdomain fraction is described. The results obtained are easily applicable to label-free protein semiquantification.
Sorption of pesticides in tropical and temperate soils from Australia and the Philippines.

Science.gov (United States)

Oliver, Danielle P; Kookana, Rai S; Quintana, Belen

2005-08-10

The sorption behavior of diuron, imidacloprid, and thiacloprid was investigated using 22 soils collected in triplicate from temperate environments in Australia and tropical environments in Australia and the Philippines. Within the temperate environment in Australia, the soils were selected from a range of land uses. The average KOC values (L/kg) for imidacloprid were 326, 322, and 336; for thiacloprid, the values were 915, 743, and 842; and for diuron, the values were 579, 536, and 618 for the Ord (tropical), Mt. Lofty (temperate), and Philippines (tropical) soils, respectively. For all soils, the sorption coefficients decreased in the following order: thiacloprid > diuron > imidacloprid. There were no significant differences in sorption behavior between the tropical soils from the Philippines and the temperate soils from Australia. Sorption was also not significantly related with soil characteristics, namely, organic carbon (OC) content, clay content, and pH, for any of the three chemicals studied. When the data were sorted into separate land uses, the sorption of all three chemicals was highly correlated (P soils from the Philippines. Sorption coefficients for all three chemicals were highly correlated with OC in temperate, native soils only when one extreme value was removed. The relationships between sorption of all three chemicals and OC in temperate, pasture soils were best described by a polynomial. Sorption coefficients for imidacloprid and thiacloprid determined in the temperate pasture soils remained fairly consistent as the OC content increased from 3.3 to 5.3%, indicating that, although the total OC in the pasture soils was increasing, the component of OC involved with sorption of these two compounds may have been remaining constant. This study demonstrated that the origin of the soils (i.e., temperate vs tropical) had no significant effect on the sorption behavior, but in some cases, land use significantly affected the sorption behavior of the three
Time-Dependent Effects of Acute Exercise on University Students’ Cognitive Performance in Temperate and Cold Environments

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Ling-Yu Ji

2017-07-01

Full Text Available Background: Few studies have examined the acute exercise-induced changes in cognitive performance in different thermal environments and the time course effects.Objective: Investigate the time-dependent effects of acute exercise on university students’ processing speed, working memory and cognitive flexibility in temperate and cold environments.Method: Twenty male university students (age 23.5 ± 2.0 years with moderate physical activity level participated in a repeated-measures within-subjects design. Processing speed, working memory and cognitive flexibility were assessed using CogState test battery at baseline (BASE, followed by a 45-min rest (REST, immediately after (EX and 30 min after (POST-EX 30-min moderate-intensity treadmill running in both temperate (TEMP; 25°C and cold (COLD; 10°C environments. Mean skin temperature (MST and thermal sensation (TS were also recorded. Two-way repeated measures ANOVA was performed to analyze each variable. Spearman’s rho was used to identify the correlations between MST, TS and cognitive performance.Results: Reaction time (RT of processing speed and working memory decreased immediately after exercise in both conditions (processing speed: p = 0.003; working memory: p = 0.007. The facilitating effects on processing speed disappeared within 30 min after exercise in TEMP (p = 0.163 and COLD (p = 0.667, while improvements on working memory remained 30 min after exercise in TEMP (p = 0.047, but not in COLD (p = 0.663. Though RT of cognitive flexibility reduced in both conditions (p = 0.003, no significance was found between EX and REST (p = 0.135. Increased MST and TS were significantly associated with reductions in processing speed RT (MST: r = -0.341, p < 0.001; TS: r = -0.262, p = 0.001 and working memory RT (MST: r = -0.282, p < 0.001; TS: r = -0.2229, p = 0.005, and improvements in working memory accuracy (MST: r = 0.249, p = 0.002; TS: r = 0.255, p = 0.001.Conclusion: The results demonstrate
Plastic litter from shotgun ammunition on Danish coastlines - Amounts and provenance.

Science.gov (United States)

Kanstrup, Niels; Balsby, Thorsten J S

2018-06-01

Plastic litter in the marine environment is a major global issue. Discarded plastic shotgun ammunition shells and discharged wads are an unwelcome addition and feature among the top ten litter items found on reference beaches in Denmark. To understand this problem, its scale and origins, collections were made by volunteers along Danish coastal shorelines. In all 3669 plastic ammunition items were collected at 68 sites along 44.6 km of shoreline. The collected items were scored for characteristic variables such as gauge and length, shot type, and the legibility of text, the erosion, and the presence of metallic components. Scores for characteristics were related to the site, area, and season and possible influences discussed. The prevalence of collected plastic shotgun litter ranges from zero to 41 items per 100 m with an average of 3.7 items per 100 m. Most ammunition litter on Danish coasts originates from hunting on Danish coastal waterbodies, but a small amount may come from further afield. North Sea coasts are the most distinctive suggesting the possible contribution of long distance drift as well as the likelihood that such litter can persist in marine habitats for decades. The pathway from initial discard to eventual wash-up and collection depends on the physical properties of plastic components, marine tides and currents, coastal topography and shoreline vegetation. Judging from the disintegration of the cartridge and the wear and decomposition of components, we conclude that there is a substantial supply of polluting plastic ammunition materials that has and will accumulate. These plastic items pose a hazard to marine ecosystems and wash up on coasts for many years to come. We recommend that responsible managers, hunters and ammunition manufacturers will take action now to reduce the problem and, thereby, protect ecosystems, wildlife and the sustainability of hunting. Copyright © 2018 Elsevier Ltd. All rights reserved.
A statistical approach designed for finding mathematically defined repeats in shotgun data and determining the length distribution of clone-inserts

DEFF Research Database (Denmark)

Zhong, Lan; Zhang, Kunlin; Huang, Xiangang

2003-01-01

that repeats of different copy number have different probabilities of appearance in shotgun data, so based on this principle, we constructed a statistical model and inferred criteria for mathematically defined repeats (MDRs) at different shotgun coverages. According to these criteria, we developed software...... MDRmasker to identify and mask MDRs in shotgun data. With repeats masked prior to assembly, the speed of assembly was increased with lower error probability. In addition, clone-insert size affect the accuracy of repeat assembly and scaffold construction, we also designed length distribution of clone...
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads

DEFF Research Database (Denmark)

Wang, Zhiwen; Hobson, Neil; Galindo, Leonardo

2012-01-01

Flax (Linum usitatissimum) is an ancient crop that is widely cultivated as a source of fiber, oil and medicinally relevant compounds. To accelerate crop improvement, we performed whole-genome shotgun sequencing of the nuclear genome of flax. Seven paired-end libraries ranging in size from 300 bp...... these results show that de novo assembly, based solely on whole-genome shotgun short-sequence reads, is an efficient means of obtaining nearly complete genome sequence information for some plant species....
Airborne Laser Scanning to support forest resource management under alpine, temperate and Mediterranean environments in Italy

Directory of Open Access Journals (Sweden)

Piermaria Corona

2012-03-01

Full Text Available This paper aims to provide general considerations, in the form of a scientific review, with reference to selected experiences of ALS applications under alpine, temperate and Mediterranean environments in Italy as case studies. In Italy, the use of ALS data have been mainly focused on the stratification of forest stands and the estimation of their timber volume and biomass at local scale. Potential for ALS data exploitation concerns their integration in forest inventories on large territories, their usage for silvicultural systems detection and their use for the estimation of fuel load in forest and pre-forest stands. Multitemporal ALS may even be suitable to support the assessment of current annual volume increment and the harvesting rates.
The Need for Temperance

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Karl Inge Tangen

2015-11-01

Full Text Available This article explores how temperance as a virtue relates to organizational leadership. The study begins with a short survey of classical Greek and Christian notions of temperance before proceeding to ex-plore temperance in relation to self-leadership, visionary and strategic leadership, and relational lead-ership. The final part of the article offers reflections on how temperance might be cultivated from a theological perspective. Temperance is understood not only as sound thinking but also as embodied self-control and active patience. On the level of self-leadership, it is argued that temperance enables the leader to establish forms of integrity that protect the leader’s self from chaos and destruction. Moreover, temperance may also nurture focused visionary leadership that accepts ethical limits and has an eye to the common good. The study also suggests that organizations should cultivate a culture of strategic discipline that is capable of realizing such visions. On the interpersonal level, temperance is viewed as critical in terms of enabling leaders to treat co-workers with respect and wisdom and han-dle conflict with consideration. Finally, is argued that that the cultivation of temperance is not a one-way street from the inside to the outside or a subordination of feelings to reason but rather a very complex process that includes interpersonal humility, finds vision in an encounter with the good, and yet remains a personal responsibility.
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.

Science.gov (United States)

Wang, Zhiwen; Hobson, Neil; Galindo, Leonardo; Zhu, Shilin; Shi, Daihu; McDill, Joshua; Yang, Linfeng; Hawkins, Simon; Neutelings, Godfrey; Datla, Raju; Lambert, Georgina; Galbraith, David W; Grassa, Christopher J; Geraldes, Armando; Cronk, Quentin C; Cullis, Christopher; Dash, Prasanta K; Kumar, Polumetla A; Cloutier, Sylvie; Sharpe, Andrew G; Wong, Gane K-S; Wang, Jun; Deyholos, Michael K

2012-11-01

Flax (Linum usitatissimum) is an ancient crop that is widely cultivated as a source of fiber, oil and medicinally relevant compounds. To accelerate crop improvement, we performed whole-genome shotgun sequencing of the nuclear genome of flax. Seven paired-end libraries ranging in size from 300 bp to 10 kb were sequenced using an Illumina genome analyzer. A de novo assembly, comprised exclusively of deep-coverage (approximately 94× raw, approximately 69× filtered) short-sequence reads (44-100 bp), produced a set of scaffolds with N(50) =694 kb, including contigs with N(50)=20.1 kb. The contig assembly contained 302 Mb of non-redundant sequence representing an estimated 81% genome coverage. Up to 96% of published flax ESTs aligned to the whole-genome shotgun scaffolds. However, comparisons with independently sequenced BACs and fosmids showed some mis-assembly of regions at the genome scale. A total of 43384 protein-coding genes were predicted in the whole-genome shotgun assembly, and up to 93% of published flax ESTs, and 86% of A. thaliana genes aligned to these predicted genes, indicating excellent coverage and accuracy at the gene level. Analysis of the synonymous substitution rates (K(s) ) observed within duplicate gene pairs was consistent with a recent (5-9 MYA) whole-genome duplication in flax. Within the predicted proteome, we observed enrichment of many conserved domains (Pfam-A) that may contribute to the unique properties of this crop, including agglutinin proteins. Together these results show that de novo assembly, based solely on whole-genome shotgun short-sequence reads, is an efficient means of obtaining nearly complete genome sequence information for some plant species. © 2012 The Authors. The Plant Journal © 2012 Blackwell Publishing Ltd.

Interactions between sire family and production environment (temperate vs. tropical) on performance and thermoregulation responses in growing pigs.

Science.gov (United States)

Rosé, R; Gilbert, H; Loyau, T; Giorgi, M; Billon, Y; Riquet, J; Renaudeau, D; Gourdine, J-L

2017-11-01

The aim of this study was to evaluate the effect of 2 climatic environments (temperate [TEMP] vs. tropical humid [TROP]) on production and thermoregulation traits in growing pigs. A backcross design involving Large White (LW; heat sensitive) and Creole (CR; heat tolerant) pigs was studied. The same 10 F LW × CR boars were mated with related LW sows in each environment. A total of 1,298 backcross pigs ( = 634 pigs from 11 batches for the TEMP environment and = 664 pigs from 12 batches for the TROP environment) were phenotyped on BW (every 15 d from wk 11 to 23 of age), voluntary feed intake (ADFI, from wk 11 to 23), backfat thickness (BFT; at wk 19 and 23), skin temperature (ST; at wk 19 and 23), and rectal temperature (RT; at wk 19, 21, and 23). The feed conversion ratio was computed for the whole test period (11 to 23 wk). The calculation of the temperature-humidity index showed an average difference of 2.4°C between the TEMP and TROP environments. The ADG and ADFI were higher in the TEMP environment than in the TROP environment (834 vs. 754 g/d and 2.20 vs. 1.80 kg/d, respectively; environment than in the TEMP environment (35.9 vs. 34.8°C for ST and 39.5 vs. 39.3°C for RT, respectively; environment interactions ( environment interaction and to detect QTL related to heat tolerance.
Midpregnancy Marriage and Divorce: Why the Death of Shotgun Marriage Has Been Greatly Exaggerated.

Science.gov (United States)

Gibson-Davis, Christina M; Ananat, Elizabeth O; Gassman-Pines, Anna

2016-12-01

Conventional wisdom holds that births following the colloquially termed "shotgun marriage"-that is, births to parents who married between conception and the birth-are nearing obsolescence. To investigate trends in shotgun marriage, we matched North Carolina administrative data on nearly 800,000 first births among white and black mothers to marriage and divorce records. We found that among married births, midpregnancy-married births (our preferred term for shotgun-married births) have been relatively stable at about 10 % over the past quarter-century while increasing substantially for vulnerable population subgroups. In 2012, among black and white less-educated and younger women, midpregnancy-married births accounted for approximately 20 % to 25 % of married first births. The increasing representation of midpregnancy-married births among married births raises concerns about well-being among at-risk families because midpregnancy marriages may be quite fragile. Our analysis revealed, however, that midpregnancy marriages were more likely to dissolve only among more advantaged groups. Of those groups considered to be most at risk of divorce-namely, black women with lower levels of education and who were younger-midpregnancy marriages had the same or lower likelihood of divorce as preconception marriages. Our results suggest an overlooked resiliency in a type of marriage that has only increased in salience.
First description of underwater acoustic diversity in three temperate ponds

Directory of Open Access Journals (Sweden)

Camille Desjonquères

2015-11-01

Full Text Available The past decade has produced an increased ecological interest in sonic environments, or soundscapes. However, despite this rise in interest and technological improvements that allow for long-term acoustic surveys in various environments, some habitats’ soundscapes remain to be explored. Ponds, and more generally freshwater habitats, are one of these acoustically unexplored environments. Here we undertook the first long term acoustic monitoring of three temperate ponds in France. By aural and visual inspection of a selection of recordings, we identified 48 different sound types, and according to the rarefaction curves we calculated, more sound types are likely present in one of the three ponds. The richness of sound types varied significantly across ponds. Surprisingly, there was no pond-to-pond daily consistency of sound type richness variation; each pond had its own daily patterns of activity. We also explored the possibility of using six acoustic diversity indices to conduct rapid biodiversity assessments in temperate ponds. We found that all indices were sensitive to the background noise as estimated through correlations with the signal-to-noise ratio (SNR. However, we determined that the AR index could be a good candidate to measure acoustic diversities using partial correlations with the SNR as a control variable. Yet, research is still required to automatically compute the SNR in order to apply this index on a large data set of recordings. The results showed that these three temperate ponds host a high level of acoustic diversity in which the soundscapes were variable not only between but also within the ponds. The sources producing this diversity of sounds and the drivers of difference in daily song type richness variation both require further investigation. Such research would yield insights into the biodiversity and ecology of temperate ponds.
Time-temperature equivalence in Martensite tempering

Energy Technology Data Exchange (ETDEWEB)

Hackenberg, Robert E. [Los Alamos National Laboratory; Thomas, Grant A. [CSM; Speer, John G. [CSM; Matlock, David K. [CSM; Krauss, George [CSM

2008-06-16

The relationship between time and temperature is of great consequence in many materials-related processes including the tempering of martensite. In 1945, Hollomon and Jaffe quantified the 'degree of tempering' as a function of both tempering time, t, and tempering temperature, T, using the expression, T(log t + c). Here, c is thought to be a material constant and appears to decrease linearly with increasing carbon content. The Hollomon-Jaffe tempering parameter is frequently cited in the literature. This work reviews the original derivation of the tempering parameter concept, and presents the use of the characteristics diffusion distance as an alternative time-temperature relationship during martensite tempering. During the tempering of martensite, interstitial carbon atoms diffuse to form carbides. In addition, austenite decomposes, dislocations and grain boundaries rearrange, associated with iron self diffusion. Since these are all diffusional processes, it is reasonable to expect the degree of tempering to relate to the extent of diffusion.
Defining Diagnostic Biomarkers Using Shotgun Proteomics and MALDI-TOF Mass Spectrometry.

Science.gov (United States)

Armengaud, Jean

2017-01-01

Whole-cell MALDI-TOF has become a robust and widely used tool to quickly identify any pathogen. In addition to being routinely used in hospitals, it is also useful for low cost dereplication in large scale screening procedures of new environmental isolates for environmental biotechnology or taxonomical applications. Here, I describe how specific biomarkers can be defined using shotgun proteomics and whole-cell MALDI-TOF mass spectrometry. Based on MALDI-TOF spectra recorded on a given set of pathogens with internal calibrants, m/z values of interest are extracted. The proteins which contribute to these peaks are deduced from label-free shotgun proteomics measurements carried out on the same sample. Quantitative information based on the spectral count approach allows ranking the most probable candidates. Proteogenomic approaches help to define whether these proteins give the same m/z values along the whole taxon under consideration or result in heterogeneous lists. These specific biomarkers nicely complement conventional profiling approaches and may help to better define groups of organisms, for example at the subspecies level.
PAnalyzer: A software tool for protein inference in shotgun proteomics

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Prieto Gorka

2012-11-01

Full Text Available Abstract Background Protein inference from peptide identifications in shotgun proteomics must deal with ambiguities that arise due to the presence of peptides shared between different proteins, which is common in higher eukaryotes. Recently data independent acquisition (DIA approaches have emerged as an alternative to the traditional data dependent acquisition (DDA in shotgun proteomics experiments. MSE is the term used to name one of the DIA approaches used in QTOF instruments. MSE data require specialized software to process acquired spectra and to perform peptide and protein identifications. However the software available at the moment does not group the identified proteins in a transparent way by taking into account peptide evidence categories. Furthermore the inspection, comparison and report of the obtained results require tedious manual intervention. Here we report a software tool to address these limitations for MSE data. Results In this paper we present PAnalyzer, a software tool focused on the protein inference process of shotgun proteomics. Our approach considers all the identified proteins and groups them when necessary indicating their confidence using different evidence categories. PAnalyzer can read protein identification files in the XML output format of the ProteinLynx Global Server (PLGS software provided by Waters Corporation for their MSE data, and also in the mzIdentML format recently standardized by HUPO-PSI. Multiple files can also be read simultaneously and are considered as technical replicates. Results are saved to CSV, HTML and mzIdentML (in the case of a single mzIdentML input file files. An MSE analysis of a real sample is presented to compare the results of PAnalyzer and ProteinLynx Global Server. Conclusions We present a software tool to deal with the ambiguities that arise in the protein inference process. Key contributions are support for MSE data analysis by ProteinLynx Global Server and technical replicates
Antibiotic resistant Pseudomonas spp. in the aquatic environment: A prevalence study under tropical and temperate climate conditions.

Science.gov (United States)

Devarajan, Naresh; Köhler, Thilo; Sivalingam, Periyasamy; van Delden, Christian; Mulaji, Crispin K; Mpiana, Pius T; Ibelings, Bastiaan W; Poté, John

2017-05-15

Microbial populations which are resistant to antibiotics are an emerging environmental concern with potentially serious implications for public health. Thus, there is a growing concern in exploring the occurrence of antibiotic resistance in the environment with no limitations to the factors that contribute to their emergence. The aquatic environment is considered to be a hot-spot for the acquisition and spread of antibiotic resistance due to pollution with emerging contaminants derived from anthropogenic activities. In this study, we report on the isolation and characterization of 141 Pseudomonas spp. from aquatic sediments receiving partially (un)treated hospital and communal effluents from three distinct geographical locations: Democratic Republic of the Congo (DRC), India (IN), and Switzerland (CH). P. putida (42%) and P. aeruginosa (39%) were the dominant Pseudomonas species. The highest frequency of antibiotic resistance against eight anti-pseudomonas agents was found among IN isolates (35-60%), followed by DRC (18-50%) and CH (12-54%). CTX-M was the most frequent β-lactamase found in CH (47% of isolates), while VIM-1 was dominant in isolates from DRC (61%) and IN (29%). NDM-1 was found in 29% of the total IN isolates and surprisingly also in 6% of CH isolates. Chromosomally-encoded efflux mechanisms were overexpressed in P. aeruginosa isolates from all three geographic locations. In vitro conjugative transfers of antibiotic resistance plasmids occurred more frequently under tropical temperatures (30 and 37 °C) than under temperate conditions (10 °C). The presence of Extended Spectrum β-lactamases (ESBLs) and Metallo β-lactamases (MBLs) in the isolates from environmental samples has important implications for humans who depend on public water supply and sanitation facilities. To our knowledge, this is the first study to demonstrate a comparison between treated/untreated effluents from urban and hospital settings as a source of microbial resistance
Comparative life history of the south temperate Cape Penduline Tit (Anthoscopus minutus) and north temperate Remizidae species

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Lloyd, Penn; Frauenknecht, Bernhard D.; du Plessis, Morné A.; Martin, Thomas E.

2017-01-01

We studied the breeding biology of the south temperate Cape Penduline Tit (Anthoscopus minutus) in order to compare its life history traits with those of related north temperate members of the family Remizidae, namely the Eurasian Penduline Tit (Remiz pendulinus) and the Verdin (Auriparus flaviceps). We used this comparison to test key predictions of three hypotheses thought to explain latitudinal variation in life histories among bird species—the seasonality and food limitation hypothesis, nest predation hypothesis and adult mortality hypothesis. Contrary to the general pattern of smaller clutch size and lower adult mortality among south-temperate birds living in less seasonal environments, the Cape Penduline Tit has a clutch size larger than that of the Verdin and similar to that of the Eurasian Penduline Tit, and higher adult mortality than both of the other two species. The most notable difference between the Cape Penduline Tit and the two other species is in parental behavioural strategy, with the former exhibiting bi-parental care at all stages of nesting together with facultative cooperative breeding, whereas the Eurasian Penduline Tit has uni-parental care and the Verdin has a combination of female-only incubation but bi-parental nestling care. Consequently, in comparison to the other two species, the Cape Penduline Tit exhibits greater nest attentiveness during incubation, a similar per-nestling feeding rate and greater post-fledging survival. Its relatively large clutch size, high parental investment and associated high adult mortality in a less seasonal environment are consistent with key predictions of the adult mortality hypothesis but not with key predictions of the seasonality and food limitation hypothesis in explaining life history variation among Remizidae species. These results add to a growing body of evidence of the importance of age-specific mortality in shaping life history evolution.
Identification of meat products by shotgun spectral matching

DEFF Research Database (Denmark)

Ohana, D.; Dalebout, H.; Marissen, R. J.

2016-01-01

A new method, based on shotgun spectral matching of peptide tandem mass spectra, was successfully applied to the identification of different food species. The method was demonstrated to work on raw as well as processed samples from 16 mammalian and 10 bird species by counting spectral matches...... to spectral libraries in a reference database with one spectral library per species. A phylogenetic tree could also be constructed directly from the spectra. Nearly all samples could be correctly identified at the species level, and 100% at the genus level. The method does not use any genomic information...
MULTI-DIMENSIONAL MASS SPECTROMETRY-BASED SHOTGUN LIPIDOMICS AND NOVEL STRATEGIES FOR LIPIDOMIC ANALYSES

Science.gov (United States)

Han, Xianlin; Yang, Kui; Gross, Richard W.

2011-01-01

Since our last comprehensive review on multi-dimensional mass spectrometry-based shotgun lipidomics (Mass Spectrom. Rev. 24 (2005), 367), many new developments in the field of lipidomics have occurred. These developments include new strategies and refinements for shotgun lipidomic approaches that use direct infusion, including novel fragmentation strategies, identification of multiple new informative dimensions for mass spectrometric interrogation, and the development of new bioinformatic approaches for enhanced identification and quantitation of the individual molecular constituents that comprise each cell’s lipidome. Concurrently, advances in liquid chromatography-based platforms and novel strategies for quantitative matrix-assisted laser desorption/ionization mass spectrometry for lipidomic analyses have been developed. Through the synergistic use of this repertoire of new mass spectrometric approaches, the power and scope of lipidomics has been greatly expanded to accelerate progress toward the comprehensive understanding of the pleiotropic roles of lipids in biological systems. PMID:21755525
Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing

OpenAIRE

Hasan, Nur A.; Young, Brian A.; Minard-Smith, Angela T.; Saeed, Kelly; Li, Huai; Heizer, Esley M.; McMillan, Nancy J.; Isom, Richard; Abdullah, Abdul Shakur; Bornman, Daniel M.; Faith, Seth A.; Choi, Seon Young; Dickens, Michael L.; Cebula, Thomas A.; Colwell, Rita R.

2014-01-01

Human saliva is clinically informative of both oral and general health. Since next generation shotgun sequencing (NGS) is now widely used to identify and quantify bacteria, we investigated the bacterial flora of saliva microbiomes of two healthy volunteers and five datasets from the Human Microbiome Project, along with a control dataset containing short NGS reads from bacterial species representative of the bacterial flora of human saliva. GENIUS, a system designed to identify and quantify ba...
Comparisons of invasive plants in southern Africa originating from southern temperate, northern temperate and tropical regions

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L. Henderson

2006-08-01

Full Text Available A subset of invasive alien plant species in southern Africa was analysed in terms of their history of introduction, rate of spread, countries/region of origin, taxonomy, growth forms, cultivated uses, weed status and current distribution in southern Africa, and comparisons made of those originating from south of the tropic of Capricorn, north of the tropic of Cancer and from the tropics. The subset of 233 species, belonging to 58 families, includes all important declared species and some potentially important species. Almost as many species originate from temperate regions (112 as from the tropics (121. Most southern temperate species came from Australia (28/36, most tropical species from tropical America (92/121 and most northern temperate species from Europe (including the Mediterranean and Asia (58/76. Transformers account for 33% of all species. More transformers are of tropical origin (36 than of northern temperate (24 and southern temperate origin (18. However. 50% of southern temperate species are transformers, compared to 32% of northern temperate and 29% of tropical species. Southern temperate transformer species are mainly woody trees and shrubs that were established on a grand scale as silvicultural crops, barriers (hedges, windbreaks and screens and cover/binders. Most aquatics, herbs, climbers and succulent shrubs an. trom the tropics. Ornamentals are the single largest category of plants from all three regions, the tropics having contributed twice as many species as temperate regions.
Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data.

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Can Alkan

2007-09-01

Full Text Available The major DNA constituent of primate centromeres is alpha satellite DNA. As much as 2%-5% of sequence generated as part of primate genome sequencing projects consists of this material, which is fragmented or not assembled as part of published genome sequences due to its highly repetitive nature. Here, we develop computational methods to rapidly recover and categorize alpha-satellite sequences from previously uncharacterized whole-genome shotgun sequence data. We present an algorithm to computationally predict potential higher-order array structure based on paired-end sequence data and then experimentally validate its organization and distribution by experimental analyses. Using whole-genome shotgun data from the human, chimpanzee, and macaque genomes, we examine the phylogenetic relationship of these sequences and provide further support for a model for their evolution and mutation over the last 25 million years. Our results confirm fundamental differences in the dispersal and evolution of centromeric satellites in the Old World monkey and ape lineages of evolution.
Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data.

Science.gov (United States)

Alkan, Can; Ventura, Mario; Archidiacono, Nicoletta; Rocchi, Mariano; Sahinalp, S Cenk; Eichler, Evan E

2007-09-01

The major DNA constituent of primate centromeres is alpha satellite DNA. As much as 2%-5% of sequence generated as part of primate genome sequencing projects consists of this material, which is fragmented or not assembled as part of published genome sequences due to its highly repetitive nature. Here, we develop computational methods to rapidly recover and categorize alpha-satellite sequences from previously uncharacterized whole-genome shotgun sequence data. We present an algorithm to computationally predict potential higher-order array structure based on paired-end sequence data and then experimentally validate its organization and distribution by experimental analyses. Using whole-genome shotgun data from the human, chimpanzee, and macaque genomes, we examine the phylogenetic relationship of these sequences and provide further support for a model for their evolution and mutation over the last 25 million years. Our results confirm fundamental differences in the dispersal and evolution of centromeric satellites in the Old World monkey and ape lineages of evolution.
Testing for functional convergence of temperate rainforest tree assemblages in Chile and New Zealand

NARCIS (Netherlands)

Lusk, C.H.; Jimenez-Castillo, M.; Aragón, R.; Easdale, T.A.; Poorter, L.; Hinojosa, L.F.; Mason, N.W.H.W.H.

2016-01-01

An important tenet of biogeography and comparative ecology is that disjunct assemblages in similar physical environments are functionally more similar to each other than to assemblages from other environments. Temperate rainforests in South America, New Zealand and Australia share certain
Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing.

Science.gov (United States)

Chan, Chia Sing; Chan, Kok-Gan; Tay, Yea-Ling; Chua, Yi-Heng; Goh, Kian Mau

2015-01-01

The Sungai Klah (SK) hot spring is the second hottest geothermal spring in Malaysia. This hot spring is a shallow, 150-m-long, fast-flowing stream, with temperatures varying from 50 to 110°C and a pH range of 7.0-9.0. Hidden within a wooded area, the SK hot spring is continually fed by plant litter, resulting in a relatively high degree of total organic content (TOC). In this study, a sample taken from the middle of the stream was analyzed at the 16S rRNA V3-V4 region by amplicon metagenome sequencing. Over 35 phyla were detected by analyzing the 16S rRNA data. Firmicutes and Proteobacteria represented approximately 57% of the microbiome. Approximately 70% of the detected thermophiles were strict anaerobes; however, Hydrogenobacter spp., obligate chemolithotrophic thermophiles, represented one of the major taxa. Several thermophilic photosynthetic microorganisms and acidothermophiles were also detected. Most of the phyla identified by 16S rRNA were also found using the shotgun metagenome approaches. The carbon, sulfur, and nitrogen metabolism within the SK hot spring community were evaluated by shotgun metagenome sequencing, and the data revealed diversity in terms of metabolic activity and dynamics. This hot spring has a rich diversified phylogenetic community partly due to its natural environment (plant litter, high TOC, and a shallow stream) and geochemical parameters (broad temperature and pH range). It is speculated that symbiotic relationships occur between the members of the community.
Shotgun Proteomics and Biomarker Discovery

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W. Hayes McDonald

2002-01-01

Full Text Available Coupling large-scale sequencing projects with the amino acid sequence information that can be gleaned from tandem mass spectrometry (MS/MS has made it much easier to analyze complex mixtures of proteins. The limits of this “shotgun” approach, in which the protein mixture is proteolytically digested before separation, can be further expanded by separating the resulting mixture of peptides prior to MS/MS analysis. Both single dimensional high pressure liquid chromatography (LC and multidimensional LC (LC/LC can be directly interfaced with the mass spectrometer to allow for automated collection of tremendous quantities of data. While there is no single technique that addresses all proteomic challenges, the shotgun approaches, especially LC/LC-MS/MS-based techniques such as MudPIT (multidimensional protein identification technology, show advantages over gel-based techniques in speed, sensitivity, scope of analysis, and dynamic range. Advances in the ability to quantitate differences between samples and to detect for an array of post-translational modifications allow for the discovery of classes of protein biomarkers that were previously unassailable.
Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry

DEFF Research Database (Denmark)

Ejsing, Christer S.; Sampaio, Julio L; Surendranath, Vineeth

2009-01-01

95% coverage of the yeast lipidome achieved with 125-fold improvement in sensitivity compared with previous approaches. Comparative lipidomics demonstrated that growth temperature and defects in lipid biosynthesis induce ripple effects throughout the molecular composition of the yeast lipidome....... This work serves as a resource for molecular characterization of eukaryotic lipidomes, and establishes shotgun lipidomics as a powerful platform for complementing biochemical studies and other systems-level approaches....
Shotgun lipidomic analysis of chemically sulfated sterols compromises analytical sensitivity

DEFF Research Database (Denmark)

Casanovas, Albert; Hannibal-Bach, Hans Kristian; Jensen, Ole Nørregaard

2014-01-01

Shotgun lipidomics affords comprehensive and quantitative analysis of lipid species in cells and tissues at high-throughput [1 5]. The methodology is based on direct infusion of lipid extracts by electrospray ionization (ESI) combined with tandem mass spectrometry (MS/MS) and/or high resolution F...... low ionization efficiency in ESI [7]. For this reason, chemical derivatization procedures including acetylation [8] or sulfation [9] are commonly implemented to facilitate ionization, detection and quantification of sterols for global lipidome analysis [1-3, 10]....
Diversity and abundance of photosynthetic sponges in temperate Western Australia

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Brümmer Franz

2009-02-01

Full Text Available Abstract Background Photosynthetic sponges are important components of reef ecosystems around the world, but are poorly understood. It is often assumed that temperate regions have low diversity and abundance of photosynthetic sponges, but to date no studies have investigated this question. The aim of this study was to compare the percentages of photosynthetic sponges in temperate Western Australia (WA with previously published data on tropical regions, and to determine the abundance and diversity of these associations in a range of temperate environments. Results We sampled sponges on 5 m belt transects to determine the percentage of photosynthetic sponges and identified at least one representative of each group of symbionts using 16S rDNA sequencing together with microscopy techniques. Our results demonstrate that photosynthetic sponges are abundant in temperate WA, with an average of 63% of sponge individuals hosting high levels of photosynthetic symbionts and 11% with low to medium levels. These percentages of photosynthetic sponges are comparable to those found on tropical reefs and may have important implications for ecosystem function on temperate reefs in other areas of the world. A diverse range of symbionts sometimes occurred within a small geographic area, including the three "big" cyanobacterial clades, Oscillatoria spongeliae, "Candidatus Synechococcus spongiarum" and Synechocystis species, and it appears that these clades all occur in a wide range of sponges. Additionally, spongin-permeating red algae occurred in at least 7 sponge species. This study provides the first investigation of the molecular phylogeny of rhodophyte symbionts in sponges. Conclusion Photosynthetic sponges are abundant and diverse in temperate WA, with comparable percentages of photosynthetic to non-photosynthetic sponges to tropical zones. It appears that there are three common generalist clades of cyanobacterial symbionts of sponges which occur in a wide

Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing.

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Nathan Wales

Full Text Available DNA extracted from ancient plant remains almost always contains a mixture of endogenous (that is, derived from the plant and exogenous (derived from other sources DNA. The exogenous 'contaminant' DNA, chiefly derived from microorganisms, presents significant problems for shotgun sequencing. In some samples, more than 90% of the recovered sequences are exogenous, providing limited data relevant to the sample. However, other samples have far less contamination and subsequently yield much more useful data via shotgun sequencing. Given the investment required for high-throughput sequencing, whenever multiple samples are available, it is most economical to sequence the least contaminated sample. We present an assay based on quantitative real-time PCR which estimates the relative amounts of fungal and bacterial DNA in a sample in comparison to the endogenous plant DNA. Given a collection of contextually-similar ancient plant samples, this low cost assay aids in selecting the best sample for shotgun sequencing.
Shotgun glycomics of pig lung identifies natural endogenous receptors for influenza viruses.

Science.gov (United States)

Byrd-Leotis, Lauren; Liu, Renpeng; Bradley, Konrad C; Lasanajak, Yi; Cummings, Sandra F; Song, Xuezheng; Heimburg-Molinaro, Jamie; Galloway, Summer E; Culhane, Marie R; Smith, David F; Steinhauer, David A; Cummings, Richard D

2014-06-03

Influenza viruses bind to host cell surface glycans containing terminal sialic acids, but as studies on influenza binding become more sophisticated, it is becoming evident that although sialic acid may be necessary, it is not sufficient for productive binding. To better define endogenous glycans that serve as viral receptors, we have explored glycan recognition in the pig lung, because influenza is broadly disseminated in swine, and swine have been postulated as an intermediary host for the emergence of pandemic strains. For these studies, we used the technology of "shotgun glycomics" to identify natural receptor glycans. The total released N- and O-glycans from pig lung glycoproteins and glycolipid-derived glycans were fluorescently tagged and separated by multidimensional HPLC, and individual glycans were covalently printed to generate pig lung shotgun glycan microarrays. All viruses tested interacted with one or more sialylated N-glycans but not O-glycans or glycolipid-derived glycans, and each virus demonstrated novel and unexpected differences in endogenous N-glycan recognition. The results illustrate the repertoire of specific, endogenous N-glycans of pig lung glycoproteins for virus recognition and offer a new direction for studying endogenous glycan functions in viral pathogenesis.
In-Depth Analysis of Exoproteomes from Marine Bacteria by Shotgun Liquid Chromatography-Tandem Mass Spectrometry: the Ruegeria pomeroyi DSS-3 Case-Study

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Jean Armengaud

2010-07-01

Full Text Available Microorganisms secrete into their extracellular environment numerous compounds that are required for their survival. Many of these compounds could be of great interest for biotechnology applications and their genes used in synthetic biology design. The secreted proteins and the components of the translocation systems themselves can be scrutinized in-depth by the most recent proteomic tools. While the secretomes of pathogens are well-documented, those of non-pathogens remain largely to be established. Here, we present the analysis of the exoproteome from the marine bacterium Ruegeria pomeroyi DSS-3 grown in standard laboratory conditions. We used a shotgun approach consisting of trypsin digestion of the exoproteome, and identification of the resulting peptides by liquid chromatography coupled to tandem mass spectrometry. Three different proteins that have domains homologous to those observed in RTX toxins were uncovered and were semi-quantified as the most abundantly secreted proteins. One of these proteins clearly stands out from the catalogue, representing over half of the total exoproteome. We also listed many soluble proteins related to ABC and TRAP transporters implied in the uptake of nutrients. The Ruegeria pomeroyi DSS-3 case-study illustrates the power of the shotgun nano-LC-MS/MS strategy to decipher the exoproteome from marine bacteria and to contribute to environmental proteomics.
Temperate radiations and dying embers of a tropical past: the diversification of Viburnum.

Science.gov (United States)

Spriggs, Elizabeth L; Clement, Wendy L; Sweeney, Patrick W; Madriñán, Santiago; Edwards, Erika J; Donoghue, Michael J

2015-07-01

We used a near-complete phylogeny for the angiosperm clade Viburnum to assess lineage diversification rates, and to examine possible morphological and ecological factors driving radiations. Maximum-likelihood and Bayesian approaches identified shifts in diversification rate and possible links to character evolution. We inferred the ancestral environment for Viburnum and changes in diversification dynamics associated with subsequent biome shifts. Viburnum probably diversified in tropical forests of Southeast Asia in the Eocene, with three subsequent radiations in temperate clades during the Miocene. Four traits (purple fruits, extrafloral nectaries, bud scales and toothed leaves) were statistically associated with higher rates of diversification. However, we argue that these traits are unlikely to be driving diversification directly. Instead, two radiations were associated with the occupation of mountainous regions and a third with repeated shifts between colder and warmer temperate forests. Early-branching depauperate lineages imply that the rare lowland tropical species are 'dying embers' of once more diverse lineages; net diversification rates in Viburnum likely decreased in these tropical environments after the Oligocene. We suggest that 'taxon pulse' dynamics might characterize other temperate plant lineages. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.
Studies on growth and age of bivalves from temperate and tropical estuarine ecosystems

Digital Repository Service at National Institute of Oceanography (India)

Parulekar, A.H.

Comparison of growth progression and age composition of Abra alba and Nuculana minuta from temperate estuarine ecosystem with Meretrix casta and Paphia malabarica from tropical estuarine environment, revealed that the annual growth rate in tropical...
Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing

Directory of Open Access Journals (Sweden)

Chia Sing eChan

2015-03-01

Full Text Available The Sungai Klah (SK hot spring is the second hottest geothermal spring in Malaysia. This hot spring is a shallow, 150-meter-long, fast-flowing stream, with temperatures varying from 50 to 110°C and a pH range of 7.0 to 9.0. Hidden within a wooded area, the SK hot spring is continually fed by plant litter, resulting in a relatively high degree of total organic content (TOC. In this study, a sample taken from the middle of the stream was analyzed at the 16S rRNA V3−V4 region by amplicon metagenome sequencing. Over 35 phyla were detected by analyzing the 16S rRNA data. Firmicutes and Proteobacteria represented approximately 57% of the microbiome. Approximately 70% of the detected thermophiles were strict anaerobes; however, Hydrogenobacter spp., obligate chemolithotrophic thermophiles, represented one of the major taxa. Several thermophilic photosynthetic microorganisms and acidothermophiles were also detected. Most of the phyla identified by 16S rRNA were also found using the shotgun metagenome approaches. The carbon, sulfur, and nitrogen metabolism within the SK hot spring community were evaluated by shotgun metagenome sequencing, and the data revealed diversity in terms of metabolic activity and dynamics. This hot spring has a rich diversified phylogenetic community partly due to its natural environment (plant litter, high TOC, and a shallow stream and geochemical parameters (broad temperature and pH range. It is speculated that symbiotic relationships occur between the members of the community.
PENGARUH VARIASI SUHU PADA PROSES SELF TEMPERING DAN VARIASI WAKTU TAHAN PADA PROSES TEMPERING TERHADAP SIFAT MEKANIS BAJA AISI 4140

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Sunardi Sunardi

2016-07-01

Full Text Available Tujuan penelitian ini adalah untuk mengetahui sifat mekanis pada baja AISI 4140 dengan proses tempering dengan variasi waktu tahan dan variasi suhu pada proses self tempering. Material terlebih dahulu dipanaskan pada suhu 850°C, di tahan dengan waktu 14 dan 28 menit, media pendinginan adalah Oli SAE 20. Pada proses tempering baja dipanaskan kembali dengan suhu 200°C di tahan dengan waktu 30 dan 120 menit. Sedangkan untuk proses self tempering, baja di panaskan pada suhu 850°C di tahan dengan waktu 14 dan 28 menit kemudian didinginkan, suhu yang harus dicapai pada pendinginan adalah 200°C, 400°C dan 600°C. Proses tempering dengan variasi waktu tahan mempunyai nilai kekerasan terbesar 50,1 HRC dengan waktu tahan 120 menit, sedangkan nilai kekerasan terbesar pada proses self tempering dengan variasi suhu adalah 29,68 HRC pada suhu 200°C. Nilai ketangguhan terbesar pada saat proses tempering adalah 0,341 (J/mm2 dengan waktu tahan 120 menit, sedangkan pada saat proses self tempering ketangguhan terbesar pada suhu 600°C dengan nilai 0,375 (J/mm2. Laju korosi terbesar pada saat tempering adalah 0,055 (mpy dengan waktu tahan 30 menit, sedangkan pada saat proses self tempering laju korosi terbesar pada suhu 400°C dengan nilai 0,0388 (mpy.
Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

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Stephen Nayfach

2015-11-01

Full Text Available Shotgun metagenomic DNA sequencing is a widely applicable tool for characterizing the functions that are encoded by microbial communities. Several bioinformatic tools can be used to functionally annotate metagenomes, allowing researchers to draw inferences about the functional potential of the community and to identify putative functional biomarkers. However, little is known about how decisions made during annotation affect the reliability of the results. Here, we use statistical simulations to rigorously assess how to optimize annotation accuracy and speed, given parameters of the input data like read length and library size. We identify best practices in metagenome annotation and use them to guide the development of the Shotgun Metagenome Annotation Pipeline (ShotMAP. ShotMAP is an analytically flexible, end-to-end annotation pipeline that can be implemented either on a local computer or a cloud compute cluster. We use ShotMAP to assess how different annotation databases impact the interpretation of how marine metagenome and metatranscriptome functional capacity changes across seasons. We also apply ShotMAP to data obtained from a clinical microbiome investigation of inflammatory bowel disease. This analysis finds that gut microbiota collected from Crohn's disease patients are functionally distinct from gut microbiota collected from either ulcerative colitis patients or healthy controls, with differential abundance of metabolic pathways related to host-microbiome interactions that may serve as putative biomarkers of disease.
Hardness of H13 Tool Steel After Non-isothermal Tempering

Science.gov (United States)

Nelson, E.; Kohli, A.; Poirier, D. R.

2018-04-01

A direct method to calculate the tempering response of a tool steel (H13) that exhibits secondary hardening is presented. Based on the traditional method of presenting tempering response in terms of isothermal tempering, we show that the tempering response for a steel undergoing a non-isothermal tempering schedule can be predicted. Experiments comprised (1) isothermal tempering, (2) non-isothermal tempering pertaining to a relatively slow heating to process-temperature and (3) fast-heating cycles that are relevant to tempering by induction heating. After establishing the tempering response of the steel under simple isothermal conditions, the tempering response can be applied to non-isothermal tempering by using a numerical method to calculate the tempering parameter. Calculated results are verified by the experiments.
Large pore dermal microdialysis and liquid chromatography-tandem mass spectroscopy shotgun proteomic analysis: a feasibility study.

Science.gov (United States)

Petersen, Lars J; Sørensen, Mette A; Codrea, Marius C; Zacho, Helle D; Bendixen, Emøke

2013-11-01

The purpose of the present pilot study was to investigate the feasibility of combining large pore dermal microdialysis with shotgun proteomic analysis in human skin. Dialysate was recovered from human skin by 2000 kDa microdialysis membranes from one subject at three different phases of the study; trauma due to implantation of the dialysis device, a post implantation steady-state period, and after induction of vasodilatation and plasma extravasation. For shotgun proteomics, the proteins were extracted and digested with trypsin. Peptides were separated by capillary and nanoflow HPLC systems, followed by tandem mass spectrometry (MS/MS) on a Quadrupole-TOF hybrid instrument. The MS/MS spectra were merged and mapped to a human target protein database to achieve peptide identification and protein inference. Results showed variation in protein amounts and profiles for each of the different sampling phases. The total protein concentration was 1.7, 0.6, and 1.3 mg/mL during the three phases, respectively. A total of 158 different proteins were identified. Immunoglobulins and the major classes of plasma proteins, including proteases, coagulation factors, apolipoproteins, albumins, and complement factors, make up the major load of proteins in all three test conditions. Shotgun proteomics allowed the identification of more than 150 proteins in microdialysis samples from human skin. This highlights the opportunities of LC-MS/MS to study the complex molecular interactions in the skin. © 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.
Cellular metabolic rate is influenced by life-history traits in tropical and temperate birds.

Science.gov (United States)

Jimenez, Ana Gabriela; Van Brocklyn, James; Wortman, Matthew; Williams, Joseph B

2014-01-01

In general, tropical birds have a "slow pace of life," lower rates of whole-animal metabolism and higher survival rates, than temperate species. A fundamental challenge facing physiological ecologists is the understanding of how variation in life-history at the whole-organism level might be linked to cellular function. Because tropical birds have lower rates of whole-animal metabolism, we hypothesized that cells from tropical species would also have lower rates of cellular metabolism than cells from temperate species of similar body size and common phylogenetic history. We cultured primary dermal fibroblasts from 17 tropical and 17 temperate phylogenetically-paired species of birds in a common nutritive and thermal environment and then examined basal, uncoupled, and non-mitochondrial cellular O2 consumption (OCR), proton leak, and anaerobic glycolysis (extracellular acidification rates [ECAR]), using an XF24 Seahorse Analyzer. We found that multiple measures of metabolism in cells from tropical birds were significantly lower than their temperate counterparts. Basal and uncoupled cellular metabolism were 29% and 35% lower in cells from tropical birds, respectively, a decrease closely aligned with differences in whole-animal metabolism between tropical and temperate birds. Proton leak was significantly lower in cells from tropical birds compared with cells from temperate birds. Our results offer compelling evidence that whole-animal metabolism is linked to cellular respiration as a function of an animal's life-history evolution. These findings are consistent with the idea that natural selection has uniquely fashioned cells of long-lived tropical bird species to have lower rates of metabolism than cells from shorter-lived temperate species.
Cellular metabolic rate is influenced by life-history traits in tropical and temperate birds.

Directory of Open Access Journals (Sweden)

Ana Gabriela Jimenez

Full Text Available In general, tropical birds have a "slow pace of life," lower rates of whole-animal metabolism and higher survival rates, than temperate species. A fundamental challenge facing physiological ecologists is the understanding of how variation in life-history at the whole-organism level might be linked to cellular function. Because tropical birds have lower rates of whole-animal metabolism, we hypothesized that cells from tropical species would also have lower rates of cellular metabolism than cells from temperate species of similar body size and common phylogenetic history. We cultured primary dermal fibroblasts from 17 tropical and 17 temperate phylogenetically-paired species of birds in a common nutritive and thermal environment and then examined basal, uncoupled, and non-mitochondrial cellular O2 consumption (OCR, proton leak, and anaerobic glycolysis (extracellular acidification rates [ECAR], using an XF24 Seahorse Analyzer. We found that multiple measures of metabolism in cells from tropical birds were significantly lower than their temperate counterparts. Basal and uncoupled cellular metabolism were 29% and 35% lower in cells from tropical birds, respectively, a decrease closely aligned with differences in whole-animal metabolism between tropical and temperate birds. Proton leak was significantly lower in cells from tropical birds compared with cells from temperate birds. Our results offer compelling evidence that whole-animal metabolism is linked to cellular respiration as a function of an animal's life-history evolution. These findings are consistent with the idea that natural selection has uniquely fashioned cells of long-lived tropical bird species to have lower rates of metabolism than cells from shorter-lived temperate species.
Improvement of a sample preparation method assisted by sodium deoxycholate for mass-spectrometry-based shotgun membrane proteomics.

Science.gov (United States)

Lin, Yong; Lin, Haiyan; Liu, Zhonghua; Wang, Kunbo; Yan, Yujun

2014-11-01

In current shotgun-proteomics-based biological discovery, the identification of membrane proteins is a challenge. This is especially true for integral membrane proteins due to their highly hydrophobic nature and low abundance. Thus, much effort has been directed at sample preparation strategies such as use of detergents, chaotropes, and organic solvents. We previously described a sample preparation method for shotgun membrane proteomics, the sodium deoxycholate assisted method, which cleverly circumvents many of the challenges associated with traditional sample preparation methods. However, the method is associated with significant sample loss due to the slightly weaker extraction/solubilization ability of sodium deoxycholate when it is used at relatively low concentrations such as 1%. Hence, we present an enhanced sodium deoxycholate sample preparation strategy that first uses a high concentration of sodium deoxycholate (5%) to lyse membranes and extract/solubilize hydrophobic membrane proteins, and then dilutes the detergent to 1% for a more efficient digestion. We then applied the improved method to shotgun analysis of proteins from rat liver membrane enriched fraction. Compared with other representative sample preparation strategies including our previous sodium deoxycholate assisted method, the enhanced sodium deoxycholate method exhibited superior sensitivity, coverage, and reliability for the identification of membrane proteins particularly those with high hydrophobicity and/or multiple transmembrane domains. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Understanding seagrass resilience in temperate systems: the importance of timing of the disturbance

NARCIS (Netherlands)

Soissons, L.M.; Li, B.; Han, Q.; van Katwijk, M.M.; Ysebaert, T.; Herman, P.M.J.; Bouma, T.J.

2016-01-01

Temperate seagrass meadows form valuable ecosystems in coastal environments and present a distinctseasonal growth. They are threatened by an increasing amount of stressors, potentially affecting theircapacity to recover from disturbances. We hypothesized that their resilience to disturbances is
Tempered stable laws as random walk limits

OpenAIRE

Chakrabarty, Arijit; Meerschaert, Mark M.

2010-01-01

Stable laws can be tempered by modifying the L\\'evy measure to cool the probability of large jumps. Tempered stable laws retain their signature power law behavior at infinity, and infinite divisibility. This paper develops random walk models that converge to a tempered stable law under a triangular array scheme. Since tempered stable laws and processes are useful in statistical physics, these random walk models can provide a basic physical model for the underlying physical phenomena.
Understanding seagrass resilience in temperate systems: the importance of timing of the disturbance

NARCIS (Netherlands)

Soissons, L.M.; Li, B.Q.; Han, Q.Y.; Katwijk, M.M. van; Ysebaert, T.; Herman, P.M.J.; Bouma, T.J.

2016-01-01

Temperate seagrass meadows form valuable ecosystems in coastal environments and present a distinct seasonal growth. They are threatened by an increasing amount of stressors, potentially affecting their capacity to recover from disturbances. We hypothesized that their resilience to disturbances is
Cellular Metabolic Rate Is Influenced by Life-History Traits in Tropical and Temperate Birds

Science.gov (United States)

Jimenez, Ana Gabriela; Van Brocklyn, James; Wortman, Matthew; Williams, Joseph B.

2014-01-01

In general, tropical birds have a “slow pace of life,” lower rates of whole-animal metabolism and higher survival rates, than temperate species. A fundamental challenge facing physiological ecologists is the understanding of how variation in life-history at the whole-organism level might be linked to cellular function. Because tropical birds have lower rates of whole-animal metabolism, we hypothesized that cells from tropical species would also have lower rates of cellular metabolism than cells from temperate species of similar body size and common phylogenetic history. We cultured primary dermal fibroblasts from 17 tropical and 17 temperate phylogenetically-paired species of birds in a common nutritive and thermal environment and then examined basal, uncoupled, and non-mitochondrial cellular O2 consumption (OCR), proton leak, and anaerobic glycolysis (extracellular acidification rates [ECAR]), using an XF24 Seahorse Analyzer. We found that multiple measures of metabolism in cells from tropical birds were significantly lower than their temperate counterparts. Basal and uncoupled cellular metabolism were 29% and 35% lower in cells from tropical birds, respectively, a decrease closely aligned with differences in whole-animal metabolism between tropical and temperate birds. Proton leak was significantly lower in cells from tropical birds compared with cells from temperate birds. Our results offer compelling evidence that whole-animal metabolism is linked to cellular respiration as a function of an animal’s life-history evolution. These findings are consistent with the idea that natural selection has uniquely fashioned cells of long-lived tropical bird species to have lower rates of metabolism than cells from shorter-lived temperate species. PMID:24498080
The geology, botany and chemistry of selected peat-forming environments from temperate and tropical latitudes

Science.gov (United States)

Cameron, C.C.; Esterle, J.S.; Palmer, C.A.

1989-01-01

Peat has been studied in several geologic settings: (1) glaciated terrain in cold temperate Maine and Minnesota, U.S.A.; (2) an island in the Atlantic Ocean off the coast of Maine, where sea level is rising; (3) the warm temperate U.S. Atlantic and Gulf Coastal Plains, where sea level has changed often; and (4) the tropical coast of Sarawak, Malaysia, and the tropical delta of the Batang Hari River, Sumatra, Indonesia. Most of these deposits are domed (ombrotrophic or partly ombrotrophic) bogs in which peat accumulation continued above the surface of the surrounding soil. However, the bogs of the U.S. Atlantic and Gulf Coastal Plains are comparatively not as domed, and many have almost level surfaces. In some bogs, aquatic or semi-aquatic plant materials accumulated, replaced water in the depressions, and formed a surface on which marsh or swamp vegetation could subsequently live, die, and accumulate. In others, the plant materials accumulated initially on level silt or sand surfaces supporting marshes or swamps. As the peat dome formed, plants growing on it changed from luxuriant ones near the base of the dome, where nutrients were brought into the bog by surface and ground water, to stunted ones at the top of the dome, where the raised bogs are fed by nutrient-poor precipitation. The physical and chemical changes that take place in the sequence of environments from the pond stage of deposit development, through the grassy marsh stage, through the forested swamp stage, and finally through the heath dome stage can be measured in terms of acidity and ash, volatile matter, carbon, hydrogen, nitrogen, sulfur and oxygen contents, as well as in the kind and distribution of trace elements. The organic and inorganic contents of the deposits relate to geomorphology, and geomorphology relates to their settings. As models of coal formation, some domed peat deposits may help in solving problems of distribution and character of ancient coal beds. But clearly not all peat
Temper Tantrums

Science.gov (United States)

... Nine Steps to More Effective Parenting How Can Parents Discipline Without Spanking? Delayed Speech or Language Development Talking to Your Child's Preschool Teacher Your Child's Habits Separation Anxiety Breath-Holding Spells Train Your Temper View ...
Large pore dermal microdialysis and liquid chromatography-tandem mass spectroscopy shotgun proteomic analysis: a feasibility study

DEFF Research Database (Denmark)

Petersen, Lars J.; Sorensen, Mette A.; Codrea, Marius C.

2013-01-01

Background/AimsThe purpose of the present pilot study was to investigate the feasibility of combining large pore dermal microdialysis with shotgun proteomic analysis in human skin. MethodsDialysate was recovered from human skin by 2000 kDa microdialysis membranes from one subject at three different...

Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics.

Science.gov (United States)

Ceballos-Laita, Laura; Gutierrez-Carbonell, Elain; Takahashi, Daisuke; Abadía, Anunciación; Uemura, Matsuo; Abadía, Javier; López-Millán, Ana Flor

2018-04-01

This article contains consolidated proteomic data obtained from xylem sap collected from tomato plants grown in Fe- and Mn-sufficient control, as well as Fe-deficient and Mn-deficient conditions. Data presented here cover proteins identified and quantified by shotgun proteomics and Progenesis LC-MS analyses: proteins identified with at least two peptides and showing changes statistically significant (ANOVA; p ≤ 0.05) and above a biologically relevant selected threshold (fold ≥ 2) between treatments are listed. The comparison between Fe-deficient, Mn-deficient and control xylem sap samples using a multivariate statistical data analysis (Principal Component Analysis, PCA) is also included. Data included in this article are discussed in depth in the research article entitled "Effects of Fe and Mn deficiencies on the protein profiles of tomato ( Solanum lycopersicum) xylem sap as revealed by shotgun analyses" [1]. This dataset is made available to support the cited study as well to extend analyses at a later stage.
Coupling bacterioplankton populations and environment to community function in coastal temperate waters

DEFF Research Database (Denmark)

Traving, S. J.; Bentzon-Tilia, Mikkel; Knudsen-Leerbeck, H.

2016-01-01

drivers of bacterioplankton community functions, taking into account the variability in community composition and environmental conditions over seasons, in two contrasting coastal systems. A Least Absolute Shrinkage and Selection Operator (LASSO) analysis of the biological and chemical data obtained from...... surface waters over a full year indicated that specific bacterial populations were linked to measured functions. Namely, Synechococcus (Cyanobacteria) was strongly correlated with protease activity. Both function and community composition showed seasonal variation. However, the pattern of substrate...... of common drivers of bacterioplankton community functions in two different systems indicates that the drivers may be of broader relevance in coastal temperate waters....
Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas.

Science.gov (United States)

Timmins-Schiffman, Emma; Coffey, William D; Hua, Wilber; Nunn, Brook L; Dickinson, Gary H; Roberts, Steven B

2014-11-03

Ocean acidification as a result of increased anthropogenic CO2 emissions is occurring in marine and estuarine environments worldwide. The coastal ocean experiences additional daily and seasonal fluctuations in pH that can be lower than projected end-of-century open ocean pH reductions. In order to assess the impact of ocean acidification on marine invertebrates, Pacific oysters (Crassostrea gigas) were exposed to one of four different p CO2 levels for four weeks: 400 μatm (pH 8.0), 800 μatm (pH 7.7), 1000 μatm (pH 7.6), or 2800 μatm (pH 7.3). At the end of the four week exposure period, oysters in all four p CO2 environments deposited new shell, but growth rate was not different among the treatments. However, micromechanical properties of the new shell were compromised by elevated p CO2. Elevated p CO2 affected neither whole body fatty acid composition, nor glycogen content, nor mortality rate associated with acute heat shock. Shotgun proteomics revealed that several physiological pathways were significantly affected by ocean acidification, including antioxidant response, carbohydrate metabolism, and transcription and translation. Additionally, the proteomic response to a second stress differed with p CO2, with numerous processes significantly affected by mechanical stimulation at high versus low p CO2 (all proteomics data are available in the ProteomeXchange under the identifier PXD000835). Oyster physiology is significantly altered by exposure to elevated p CO2, indicating changes in energy resource use. This is especially apparent in the assessment of the effects of p CO2 on the proteomic response to a second stress. The altered stress response illustrates that ocean acidification may impact how oysters respond to other changes in their environment. These data contribute to an integrative view of the effects of ocean acidification on oysters as well as physiological trade-offs during environmental stress.
Comparative visual ecophysiology of mid-Atlantic temperate reef fishes

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Andrij Z. Horodysky

2013-11-01

The absolute light sensitivities, temporal properties, and spectral sensitivities of the visual systems of three mid-Atlantic temperate reef fishes (Atlantic spadefish [Ephippidae: Chaetodipterus faber], tautog [Labridae: Tautoga onitis], and black sea bass [Serranidae: Centropristis striata] were studied via electroretinography (ERG. Pelagic Atlantic spadefish exhibited higher temporal resolution but a narrower dynamic range than the two more demersal foragers. The higher luminous sensitivities of tautog and black sea bass were similar to other benthic and demersal coastal mid-Atlantic fishes. Flicker fusion frequency experiments revealed significant interspecific differences at maximum intensities that correlated with lifestyle and habitat. Spectral responses of the three species spanned 400–610 nm, with high likelihood of cone dichromacy providing the basis for color and contrast discrimination. Significant day-night differences in spectral responses were evident in spadefish and black sea bass but not tautog, a labrid with characteristic structure-associated nocturnal torpor. Atlantic spadefish responded to a wider range of wavelengths than did deeper-dwelling tautog or black sea bass. Collectively, these results suggest that temperate reef-associated fishes are well-adapted to their gradient of brighter to dimmer photoclimates, representative of their unique ecologies and life histories. Continuing anthropogenic degradation of water quality in coastal environments, at a pace faster than the evolution of visual systems, may however impede visual foraging and reproductive signaling in temperate reef fishes.
Shotgun metagenomic data on the human stool samples to characterize shifts of the gut microbial profile after the Helicobacter pylori eradication therapy

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Eugenia A. Boulygina

2017-10-01

Full Text Available The shotgun sequencing data presented in this report are related to the research article named “Gut microbiome shotgun sequencing in assessment of microbial community changes associated with H. pylori eradication therapy” (Khusnutdinova et al., 2016 [1]. Typically, the H. pylori eradication protocol includes a prolonged two-week use of the broad-spectrum antibiotics. The presented data on the whole-genome sequencing of the total DNA from stool samples of patients before the start of the eradication, immediately after eradication and several weeks after the end of treatment could help to profile the gut microbiota both taxonomically and functionally. The presented data together with those described in Glushchenko et al. (2017 [2] allow researchers to characterize the metagenomic profiles in which the use of antibiotics could result in dramatic changes in the intestinal microbiota composition. We perform 15 gut metagenomes from 5 patients with H. pylori infection, obtained through the shotgun sequencing on the SOLiD 5500 W platform. Raw reads are deposited in the ENA under project ID PRJEB21338.
Adhesion and wear properties of boro-tempered ductile iron

International Nuclear Information System (INIS)

Kayali, Yusuf; Yalcin, Yilmaz; Taktak, Suekrue

2011-01-01

Highlights: → In this study, the wear and adhesion properties of BDI were investigated. → Boro-tempering process under several heat treatment conditions was examined. → Optical microscope, SEM and XRD analysis were carried out to investigate the microstructure. → It was observed that boro-tempering process improves micro-hardness and wear properties of ductile irons. -- Abstract: In this study, adhesion and wear properties of boro-tempered ductile iron (BDI) were investigated. Boro-tempering was carried out on two stage processes i.e. boronizing and tempering. At the first stage, ductile iron samples were boronized by using pack process at 900 o C for 1, 3, and 5 h and then, secondly tempered at 250, 300, 350, and 400 o C for 1 h. X-ray diffraction (XRD) analysis of boro-tempered samples showed that FeB and Fe 2 B phases were found on the surface of the samples. The Daimler-Benz Rockwell-C adhesion test was used to assess the adhesion of boride layer. Test result showed that adhesion decreased with increasing boriding time and increased with increasing tempering temperature. Dry sliding wear tests of these samples were performed against Al 2 O 3 ball at a constant sliding speed and loads of 5 and 10 N. Wear tests indicated that boro-tempering heat treatment increased wear resistance of ductile iron. In addition, it was found that while wear rate of boro-tempered samples decreased with increasing boriding time, there is no significant affect of tempering temperature on wear rate.
Study on tempering behaviour of AISI 410 stainless steel

International Nuclear Information System (INIS)

Chakraborty, Gopa; Das, C.R.; Albert, S.K.; Bhaduri, A.K.; Thomas Paul, V.; Panneerselvam, G.; Dasgupta, Arup

2015-01-01

Martensitic stainless steels find extensive applications due to their optimum combination of strength, hardness and wear-resistance in tempered condition. However, this class of steels is susceptible to embrittlement during tempering if it is carried out in a specific temperature range resulting in significant reduction in toughness. Embrittlement of as-normalised AISI 410 martensitic stainless steel, subjected to tempering treatment in the temperature range of 673–923 K was studied using Charpy impact tests followed by metallurgical investigations using field emission scanning electron and transmission electron microscopes. Carbides precipitated during tempering were extracted by electrochemical dissolution of the matrix and identified by X-ray diffraction. Studies indicated that temper embrittlement is highest when the steel is tempered at 823 K. Mostly iron rich carbides are present in the steel subjected to tempering at low temperatures of around 723 K, whereas chromium rich carbides (M 23 C 6 ) dominate precipitation at high temperature tempering. The range 773–823 K is the transition temperature range for the precipitates, with both Fe 2 C and M 23 C 6 types of carbides coexisting in the material. The nucleation of Fe 2 C within the martensite lath, during low temperature tempering, has a definite role in the embrittlement of this steel. Embrittlement is not observed at high temperature tempering because of precipitation of M 23 C 6 carbides, instead of Fe 2 C, preferentially along the lath and prior austenite boundaries. Segregation of S and P, which is widely reported as one of the causes for temper embrittlement, could not be detected in the material even through Auger electron spectroscopy studies. - Highlights: • Tempering behaviour of AISI 410 steel is studied within 673–923 K temperature range. • Temperature regime of maximum embrittlement is identified as 773–848 K. • Results show that type of carbide precipitation varies with
Spring molybdenum enrichment in scallop shells: a potential tracer of diatom productivity in coastal temperate environments (Brittany, NW France)?

Science.gov (United States)

Barats, A.; Amouroux, D.; Pécheyran, C.; Chauvaud, L.; Thébault, J.; Donard, O. F. X.

2009-08-01

Skeletal molybdenum/calcium ([Mo]/[Ca])shell ratios were recently examined in bivalves. These ratios were determined by quantitative LA-ICP-MS analyses every third daily striae (i.e. a temporal resolution of 3 days) in 36 flat valves of the Great Scallop shells Pecten maximus (2-year old; 3 shells/year) collected in temperate coastal environments of Western Europe (42 to 49° N). Variations of ([Mo]/[Ca])shell ratio were significant and reproducible for scallops from a same population, from different years (1998-2004) and from different coastal temperate locations. ([Mo]/[Ca])shell exhibits typical profiles characterized by a background content, below the method detection limit (<0.003 μmol/mol) for most of the shell growth period, which is punctuated by a significant transient enrichment (0.031-2.1 μmol/mol) mainly occurring from May to June. The Bay of Brest (France) was especially investigated because of long term observations on scallop communities, environmental variables, and high resolution analyses of dissolved Mo in bottom seawater in 2000. In 2000, dissolved Mo exhibited significant increasing concentration just preceding a maximum of ([Mo]/[Ca])shell ratio. The environmental conditions preceding ([Mo]/[Ca])shell maximum events, both in 2000 and over the 7-year survey indicates a direct influence of the scallop environmental conditions at the sediment water interface subsequent to the intense and periodic spring bloom event. Spring maxima of ([Mo]/[Ca])shell ratio were found to be specifically related to the dynamic of spring diatom blooms and to the extent of the subsequent silicate depletion. ([Mo]/[Ca])shell records reveal thus unexpected biogeochemical routes of Mo, potentially related to coastal spring productivity.
A Novel Prosthetic Joint Infection Pathogen, Mycoplasma salivarium, Identified by Metagenomic Shotgun Sequencing.

Science.gov (United States)

Thoendel, Matthew; Jeraldo, Patricio; Greenwood-Quaintance, Kerryl E; Chia, Nicholas; Abdel, Matthew P; Steckelberg, James M; Osmon, Douglas R; Patel, Robin

2017-07-15

Defining the microbial etiology of culture-negative prosthetic joint infection (PJI) can be challenging. Metagenomic shotgun sequencing is a new tool to identify organisms undetected by conventional methods. We present a case where metagenomics was used to identify Mycoplasma salivarium as a novel PJI pathogen in a patient with hypogammaglobulinemia. © The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.
Parallel tempering in full QCD with Wilson fermions

International Nuclear Information System (INIS)

Ilgenfritz, E.-M.; Kerler, W.; Mueller-Preussker, M.; Stueben, H.

2002-01-01

We study the performance of QCD simulations with dynamical Wilson fermions by combining the hybrid Monte Carlo algorithm with parallel tempering on 10 4 and 12 4 lattices. In order to compare tempered with standard simulations, covariance matrices between subensembles have to be formulated and evaluated using the general properties of autocorrelations of the parallel tempering algorithm. We find that rendering the hopping parameter κ dynamical does not lead to an essential improvement. We point out possible reasons for this observation and discuss more suitable ways of applying parallel tempering to QCD
Study on tempering behaviour of AISI 410 stainless steel

Energy Technology Data Exchange (ETDEWEB)

Chakraborty, Gopa, E-mail: gopa_mjs@igcar.gov.in [Metallurgy & Materials Group, Indira Gandhi Center for Atomic Research, Kalpakkam 603102 (India); Das, C.R.; Albert, S.K.; Bhaduri, A.K.; Thomas Paul, V. [Metallurgy & Materials Group, Indira Gandhi Center for Atomic Research, Kalpakkam 603102 (India); Panneerselvam, G. [Chemistry Group, Indira Gandhi Center for Atomic Research, Kalpakkam 603102 (India); Dasgupta, Arup [Metallurgy & Materials Group, Indira Gandhi Center for Atomic Research, Kalpakkam 603102 (India)

2015-02-15

Martensitic stainless steels find extensive applications due to their optimum combination of strength, hardness and wear-resistance in tempered condition. However, this class of steels is susceptible to embrittlement during tempering if it is carried out in a specific temperature range resulting in significant reduction in toughness. Embrittlement of as-normalised AISI 410 martensitic stainless steel, subjected to tempering treatment in the temperature range of 673–923 K was studied using Charpy impact tests followed by metallurgical investigations using field emission scanning electron and transmission electron microscopes. Carbides precipitated during tempering were extracted by electrochemical dissolution of the matrix and identified by X-ray diffraction. Studies indicated that temper embrittlement is highest when the steel is tempered at 823 K. Mostly iron rich carbides are present in the steel subjected to tempering at low temperatures of around 723 K, whereas chromium rich carbides (M{sub 23}C{sub 6}) dominate precipitation at high temperature tempering. The range 773–823 K is the transition temperature range for the precipitates, with both Fe{sub 2}C and M{sub 23}C{sub 6} types of carbides coexisting in the material. The nucleation of Fe{sub 2}C within the martensite lath, during low temperature tempering, has a definite role in the embrittlement of this steel. Embrittlement is not observed at high temperature tempering because of precipitation of M{sub 23}C{sub 6} carbides, instead of Fe{sub 2}C, preferentially along the lath and prior austenite boundaries. Segregation of S and P, which is widely reported as one of the causes for temper embrittlement, could not be detected in the material even through Auger electron spectroscopy studies. - Highlights: • Tempering behaviour of AISI 410 steel is studied within 673–923 K temperature range. • Temperature regime of maximum embrittlement is identified as 773–848 K. • Results show that type of
A common framework for greenhouse gas assessment protocols in temperate agroforestry systems: Connecting via GRACEnet

Science.gov (United States)

Agroforestry systems offer many ecosystem benefits, but such systems have previously been marginalized in temperate environments due to overriding economic goals and perceived management complexity. In view of adaptation to a changing climate, agroforestry systems offer advantages that require quan...
Tempering of Low-Temperature Bainite

Science.gov (United States)

Peet, Mathew J.; Babu, Sudarsanam Suresh; Miller, Mike K.; Bhadeshia, H. K. D. H.

2017-07-01

Electron microscopy, X-ray diffraction, and atom probe tomography have been used to identify the changes which occur during the tempering of a carbide-free bainitic steel transformed at 473 K (200 °C). Partitioning of solute between ferrite and thin-films of retained austenite was observed on tempering at 673 K (400 °C) for 30 minutes. After tempering at 673 K (400 °C) and 773 K (500 °C) for 30 minutes, cementite was observed in the form of nanometre scale precipitates. Proximity histograms showed that the partitioning of solutes other than silicon from the cementite was slight at 673 K (400 °C) and more obvious at 773 K (500 °C). In both cases, the nanometre scale carbides are greatly depleted in silicon.
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

DEFF Research Database (Denmark)

Hellmann, Ines; Mang, Yuan; Gu, Zhiping

2008-01-01

We introduce a simple, broadly applicable method for obtaining estimates of nucleotide diversity from genomic shotgun sequencing data. The method takes into account the special nature of these data: random sampling of genomic segments from one or more individuals and a relatively high error rate...... for individual reads. Applying this method to data from the Celera human genome sequencing and SNP discovery project, we obtain estimates of nucleotide diversity in windows spanning the human genome and show that the diversity to divergence ratio is reduced in regions of low recombination. Furthermore, we show...
The Effect of Tempering on Strength Properties and Seed Coat ...

African Journals Online (AJOL)

The effect of tempering on seed coat adhesion strength and mechanical strength of sorghum and millet grain kernels was investigated at different tempering durations. Tempering reduced the kernel breaking strength and had significant effect on seed coat adhesion strength. Tempering the grain for 60 minutes at ambient ...
Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics.

Science.gov (United States)

Muth, Thilo; Rapp, Erdmann; Berven, Frode S; Barsnes, Harald; Vaudel, Marc

2016-01-01

Protein identification via database searches has become the gold standard in mass spectrometry based shotgun proteomics. However, as the quality of tandem mass spectra improves, direct mass spectrum sequencing gains interest as a database-independent alternative. In this chapter, the general principle of this so-called de novo sequencing is introduced along with pitfalls and challenges of the technique. The main tools available are presented with a focus on user friendly open source software which can be directly applied in everyday proteomic workflows.
Assessment of Soil Organic Carbon Stock of Temperate Coniferous Forests in Northern Kashmir

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Davood A. Dar

2015-02-01

Full Text Available Soil organic carbon (SOC estimation in temperate forests of the Himalaya is important to estimate their contribution to regional, national and global carbon stocks. Physico chemical properties of soil were quantified to assess soil organic carbon density (SOC and SOC CO2 mitigation density at two soil depths (0-10 and 10-20 cms under temperate forest in the Northern region of Kashmir Himalayas India. The results indicate that conductance, moisture content, organic carbon and organic matter were significantly higher while as pH and bulk density were lower at Gulmarg forest site. SOC % was ranging from 2.31± 0.96 at Gulmarg meadow site to 2.31 ± 0.26 in Gulmarg forest site. SOC stocks in these temperate forests were from 36.39 ±15.40 to 50.09 ± 15.51 Mg C ha-1. The present study reveals that natural vegetation is the main contributor of soil quality as it maintained the soil organic carbon stock. In addition, organic matter is an important indicator of soil quality and environmental parameters such as soil moisture and soil biological activity change soil carbon sequestration potential in temperate forest ecosystems.DOI: http://dx.doi.org/10.3126/ije.v4i1.12186International Journal of Environment Volume-4, Issue-1, Dec-Feb 2014/15; page: 161-178
High-content screening of yeast mutant libraries by shotgun lipidomics

DEFF Research Database (Denmark)

Tarasov, Kirill; Stefanko, Adam; Casanovas, Albert

2014-01-01

To identify proteins with a functional role in lipid metabolism and homeostasis we designed a high-throughput platform for high-content lipidomic screening of yeast mutant libraries. To this end, we combined culturing and lipid extraction in 96-well format, automated direct infusion...... factor KAR4 precipitated distinct lipid metabolic phenotypes. These results demonstrate that the high-throughput shotgun lipidomics platform is a valid and complementary proxy for high-content screening of yeast mutant libraries....... nanoelectrospray ionization, high-resolution Orbitrap mass spectrometry, and a dedicated data processing framework to support lipid phenotyping across hundreds of Saccharomyces cerevisiae mutants. Our novel approach revealed that the absence of genes with unknown function YBR141C and YJR015W, and the transcription...
Well-Tempered Metadynamics Converges Asymptotically

Science.gov (United States)

Dama, James F.; Parrinello, Michele; Voth, Gregory A.

2014-06-01

Metadynamics is a versatile and capable enhanced sampling method for the computational study of soft matter materials and biomolecular systems. However, over a decade of application and several attempts to give this adaptive umbrella sampling method a firm theoretical grounding prove that a rigorous convergence analysis is elusive. This Letter describes such an analysis, demonstrating that well-tempered metadynamics converges to the final state it was designed to reach and, therefore, that the simple formulas currently used to interpret the final converged state of tempered metadynamics are correct and exact. The results do not rely on any assumption that the collective variable dynamics are effectively Brownian or any idealizations of the hill deposition function; instead, they suggest new, more permissive criteria for the method to be well behaved. The results apply to tempered metadynamics with or without adaptive Gaussians or boundary corrections and whether the bias is stored approximately on a grid or exactly.
The testicular cycle of captive Tupinambis merianae lizards in a temperate environment

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Noriega, Teresa

2002-08-01

phenomenon, characterized by a short spring sexual activity. This work examines the testicular changes that occur during the reproductive cycle of Tupinambis merianae specimens raised in a temperate environment. The involvement of the kidney sexual portion as a secondary sexual gland is also considered. In autumn and winter, the testicle exhibits a discontinuous gametogenesis. Spermacytogenesis takes place in autumn, giving rise to a precocious abortive spermiogenesis which concludes at cool months. At early spring, the gonad restarts its spermiogenetic activity attaining promptly a peak of maximal growth and abundant sperm production. The testicular climax occurs shortly after hibernation and coincides with a mating period of about a month (October. At that period, the quite enlarged epididymis is lined with a cylindrical epithelium and contains large sperm masses. Simultaneously, the sexual portions of kidney tubules display hypertrophic columnar cells filled with large PAS (+ cytoplasmic granules. Soon, the reproductive activity ceases and makes way for a phase of gonadal involution which extends through the rest of spring and summer (November-February, indicating the existence of a single reproductive event per year. The observations are discussed in connection with climate factors and biological features of the group.

Early stages of formation and dispersal of the temperate flora in the Boreal region

International Nuclear Information System (INIS)

Budantsev, L.Y.

1992-01-01

The thesis of this review is that the composition of a flora can be understood only as a process, or separate stage, in the context of migration in time and space of various floristic assemblages and their isolation, as induced by transformation of continental and ocean shapes, changes in climate, and the environment as a whole. Thus the formation of geofloras of the past was influenced by gradually changing environments that determined the spread, patterning, and spatial differentiation of floras and their evolution. Parallel to the more commonly-seen names of eras-Paleozoic, Mesozoic, and Cenozoic-we can speak of the Paleophytic, Mesophytic, and Cenophytic eras. Eras defined in these two ways (by faunistic or by floristic criteria) do not completely coincide. Generally, changes in the flora have, necessarily, preceded changes in the fauna. It is the Cenophytic with which this review is mostly concerned, the era of Angiosperm dominance. The movement of early subtropical and warm temperate floras in the Early Cenophytic, followed by temperate or even boreal floras, as the climate changes, is traced in detail
Marine Biodiversity in Temperate Western Australia: Multi-Taxon Surveys of Minden and Roe Reefs

Directory of Open Access Journals (Sweden)

Zoe Richards

2016-03-01

Full Text Available A growing body of evidence indicates that temperate marine ecosystems are being tropicalised due to the poleward extension of tropical species. Such climate mediated changes in species distribution patterns have the potential to profoundly alter temperate communities, as this advance can serve to push temperate taxa, many of which are southern Australian endemics, southward. These changes can lead to cascading effects for the biodiversity and function of coastal ecosystems, including contraction of ranges/habitats of sensitive cool water species. Hence there is growing concern for the future of Australia’s temperate marine biodiversity. Here we examine the diversity and abundance of marine flora and fauna at two reefs near Perth’s metropolitan area—Minden Reef and Roe Reef. We report the presence of 427 species of marine flora and fauna from eight taxon groups occurring in the Perth metropolitan area; at least three species of which appear to be new to science. Our data also extends the known range of 15 species, and in numerous instances, thousands of kilometres south from the Kimberley or Pilbara and verifies that tropicalisation of reef communities in the Perth metropolitan area is occurring. We report the presence of 24 species endemic to south-west Australia that may be at risk of range contractions with continued ocean warming. The results of these surveys add to our knowledge of local nearshore marine environments in the Perth metropolitan area and support the growing body of evidence that indicates a diverse and regionally significant marine fauna occurs in temperate Western Australia. Regular, repeated survey work across seasons is important in order to thoroughly document the status of marine biodiversity in this significant transition zone.
Importance of adaptation and genotype × environment interactions in tropical beef breeding systems.

Science.gov (United States)

Burrow, H M

2012-05-01

This paper examines the relative importance of productive and adaptive traits in beef breeding systems based on Bos taurus and tropically adapted breeds across temperate and (sub)tropical environments. In the (sub)tropics, differences that exist between breeds in temperate environments are masked by the effects of environmental stressors. Hence in tropical environments, breeds are best categorised into breed types to compare their performance across environments. Because of the presence of environmental stressors, there are more sources of genetic variation in tropical breeding programmes. It is therefore necessary to examine the genetic basis of productive and adaptive traits for breeding programmes in those environments. This paper reviews the heritabilities and genetic relationships between economically important productive and adaptive traits relevant to (sub)tropical breeding programmes. It is concluded that it is possible to simultaneously genetically improve productive and adaptive traits in tropically adapted breeds of beef cattle grazed in tropical environments without serious detrimental consequences for either adaptation or production. However, breed-specific parameters are required for genetic evaluations. The paper also reviews the magnitude of genotype × environment (G × E) interactions impacting on production and adaptation of cattle, where 'genotype' is defined as breed (within a crossbreeding system), sire within breed (in a within-breed selection programme) or associations between economically important traits and single nucleotide polymorphisms (SNPs - within a marker-assisted selection programme). It is concluded that re-ranking of breeds across environments is best managed by the use of the breed type(s) best suited to the particular production environment. Re-ranking of sires across environments is apparent in poorly adapted breed types across extreme tropical and temperate environments or where breeding animals are selected in a temperate
Drilling in tempered glass – modelling and experiments

DEFF Research Database (Denmark)

Nielsen, Jens Henrik

The present paper reports experimentally and numerically obtained results for the process of drilling in tempered glass. The experimental results are drilling depths on the edge in 19mm tempered glass with a known residual stress state measured by a scattered light polariscope. The experiments have...... been modelled using a state-of-the-art model and compared with satisfying result to the performed experiments. The numerical model has been used for a parametric study, investigating the redistribution of residual stresses during the process of drilling. This is done for investigating the possibility...... of applying forces in such holes and thereby being able to mechanically assemble tempered glass without the need of drilling holes before the tempering process. The paper is the result of currently ongoing research and the results should be treated as so....
Time-dependent temper embrittlement of reactor pressure vessel steel: Correlation between microstructural evolution and mechanical properties during tempering at 650 °C

Energy Technology Data Exchange (ETDEWEB)

Li, Chuanwei; Han, Lizhan; Yan, Guanghua; Liu, Qingdong; Luo, Xiaomeng; Gu, Jianfeng, E-mail: gujf@sjtu.edu.cn

2016-11-15

The microstructural evolution of reactor pressure vessel (RPV) steel and its effect on the mechanical properties during tempering at 650 °C were studied to reveal the time-dependent toughness and temper embrittlement. The results show that the toughening of the material should be attributed to the decomposition of the martensite/austenite constituents and uniform distribution of carbides. When the tempering duration was 5 h, the strength of the investigated steel decreased to strike a balance with the material impact toughness that reached a plateau. As the tempering duration was further increased, the material strength was slightly reduced but the material impact toughness deteriorated drastically. This time-dependent temper embrittlement is different from traditional temper embrittlement, and it can be partly attributed to the softening of the matrix and the broadening of the ferrite laths. Moreover, the dimensions and distribution of the grain carbides are the most important factors of the impact toughness. - Highlights: • The fracture mechanism of reactor pressure vessel (RPV) steels under impact load was investigated. • The Charpy V-notch impact test and the hinge model were employed for the study. • Grain boundary carbides play a key role in the impact toughness and fracture toughness. • The dependence of the deterioration of impact toughness on tempering time was analyzed for the first time.
Spring molybdenum enrichment in scallop shells: a potential tracer of diatom productivity in temperate coastal environments (Brittany, NW France)

Science.gov (United States)

Barats, A.; Amouroux, D.; Pécheyran, C.; Chauvaud, L.; Thébault, J.; Donard, O. F. X.

2010-01-01

Skeletal molybdenum/calcium ([Mo]/[Ca])shell ratios were examined in shells of the Great Scallop Pecten maximus collected in temperate coastal environments of Western Europe (42 to 49° N). These ratios were determined by quantitative LA-ICP-MS analyses of daily striae taken every third day (i.e. a temporal resolution of 3 days) in 36 flat valves (2-years old; 3 shells/year). Variations of ([Mo]/[Ca])shell ratios were significant and reproducible for scallops from the same population, from different years (1998-2004) and temperate coastal locations (NW France). The [Mo]/[Ca])shell ratios exhibit typical profiles characterized by a background content, below the detection limit for this method (<0.003 μmol/mol) for most of the shell growth period, which is punctuated by a significant transient enrichment (0.031-2.1 μmol/mol) mainly occurring from May to June. The Bay of Brest (France) was investigated in particular because of its long term observations on scallop communities, environmental variables, and high resolution analyses of dissolved Mo in bottom seawater in 2000. In 2000, dissolved Mo exhibited a significant increase in concentration just preceding the maximum ([Mo]/[Ca])shell ratio. Both the intense monitoring survey in 2000 and over the 7-year period indicates that the ([Mo]/[Ca])shell maximum is directly influenced by spring changes of environmental conditions at the sediment water interface (SWI), occurring subsequent to the intense and periodic spring bloom. Spring maxima of ([Mo]/[Ca])shell ratios are closely correlated to the extent of silicic acid and nitrate depletion in seawater between winter and late spring (r2=0.878 and 0.780, p<0.05, n=6) that reflects diatom uptake and productivity in the Bay of Brest. The Mo inputs in bottom waters and subsequent shell enrichment are thus suggested to be directly or indirectly influenced by such biogenic material input at the SWI. The [Mo]/[Ca])shell records thus reveal unexpected biogeochemical cycles of
Effects of tempering on internal friction of carbon steels

International Nuclear Information System (INIS)

Hoyos, J.J.; Ghilarducci, A.A.; Salva, H.R.; Chaves, C.A.; Velez, J.M.

2011-01-01

Research highlights: → Time tempering dependent microstructure of two steels is studied by internal friction. → Internal friction indicates the interactions of dislocations with carbon and carbides. → Internal friction detects the first stage of tempering. → Precipitation hardening is detected by the decrease in the background. - Abstract: Two steels containing 0.626 and 0.71 wt.% carbon have been studied to determine the effects of tempering on the microstructure and the internal friction. The steels were annealed at 1093 K, quenched into water and tempered for 60 min at 423 K, 573 K and 723 K. The increase of the tempering time diminishes the martensite tetragonality due to the redistribution of carbon atoms from octahedrical interstitial sites to dislocations. Internal friction spectrum is decomposed into five peaks and an exponential background, which are attributed to the carbide precipitation and the dislocation relaxation process. Simultaneous presence of peaks P1 and P2 indicates the interaction of dislocations with the segregated carbon and carbide precipitate.
Thermal biology of the sub-polar-temperate estuarine crab Hemigrapsus crenulatus (Crustacea: Decapoda: Varunidae).

Science.gov (United States)

Cumillaf, Juan P; Blanc, Johnny; Paschke, Kurt; Gebauer, Paulina; Díaz, Fernando; Re, Denisse; Chimal, María E; Vásquez, Jorge; Rosas, Carlos

2016-02-15

Optimum temperatures can be measured through aerobic scope, preferred temperatures or growth. A complete thermal window, including optimum, transition (Pejus) and critical temperatures (CT), can be described if preferred temperatures and CT are defined. The crustacean Hemigrapsus crenulatus was used as a model species to evaluate the effect of acclimation temperature on: (i) thermal preference and width of thermal window, (ii) respiratory metabolism, and (iii) haemolymph proteins. Dependant on acclimation temperature, preferred temperature was between 11.8°C and 25.2°C while CT was found between a minimum of 2.7°C (CTmin) and a maximum of 35.9°C (CTmax). These data and data from tropical and temperate crustaceans were compared to examine the association between environmental temperature and thermal tolerance. Temperate species have a CTmax limit around 35°C that corresponded with the low CTmax limit of tropical species (34-36°C). Tropical species showed a CTmin limit around 9°C similar to the maximum CTmin of temperate species (5-6°C). The maximum CTmin of deep sea species that occur in cold environments (2.5°C) matched the low CTmin values (3.2°C) of temperate species. Results also indicate that the energy required to activate the enzyme complex (Ei) involved in respiratory metabolism of ectotherms changes along the latitudinal gradient of temperature. © 2016. Published by The Company of Biologists Ltd.
Thermal biology of the sub-polar–temperate estuarine crab Hemigrapsus crenulatus (Crustacea: Decapoda: Varunidae)

Science.gov (United States)

Cumillaf, Juan P.; Blanc, Johnny; Paschke, Kurt; Gebauer, Paulina; Díaz, Fernando; Re, Denisse; Chimal, María E.; Vásquez, Jorge; Rosas, Carlos

2016-01-01

ABSTRACT Optimum temperatures can be measured through aerobic scope, preferred temperatures or growth. A complete thermal window, including optimum, transition (Pejus) and critical temperatures (CT), can be described if preferred temperatures and CT are defined. The crustacean Hemigrapsus crenulatus was used as a model species to evaluate the effect of acclimation temperature on: (i) thermal preference and width of thermal window, (ii) respiratory metabolism, and (iii) haemolymph proteins. Dependant on acclimation temperature, preferred temperature was between 11.8°C and 25.2°C while CT was found between a minimum of 2.7°C (CTmin) and a maximum of 35.9°C (CTmax). These data and data from tropical and temperate crustaceans were compared to examine the association between environmental temperature and thermal tolerance. Temperate species have a CTmax limit around 35°C that corresponded with the low CTmax limit of tropical species (34–36°C). Tropical species showed a CTmin limit around 9°C similar to the maximum CTmin of temperate species (5–6°C). The maximum CTmin of deep sea species that occur in cold environments (2.5°C) matched the low CTmin values (3.2°C) of temperate species. Results also indicate that the energy required to activate the enzyme complex (Ei) involved in respiratory metabolism of ectotherms changes along the latitudinal gradient of temperature. PMID:26879464
Thermal biology of the sub-polar–temperate estuarine crab Hemigrapsus crenulatus (Crustacea: Decapoda: Varunidae

Directory of Open Access Journals (Sweden)

Juan P. Cumillaf

2016-03-01

Full Text Available Optimum temperatures can be measured through aerobic scope, preferred temperatures or growth. A complete thermal window, including optimum, transition (Pejus and critical temperatures (CT, can be described if preferred temperatures and CT are defined. The crustacean Hemigrapsus crenulatus was used as a model species to evaluate the effect of acclimation temperature on: (i thermal preference and width of thermal window, (ii respiratory metabolism, and (iii haemolymph proteins. Dependant on acclimation temperature, preferred temperature was between 11.8°C and 25.2°C while CT was found between a minimum of 2.7°C (CTmin and a maximum of 35.9°C (CTmax. These data and data from tropical and temperate crustaceans were compared to examine the association between environmental temperature and thermal tolerance. Temperate species have a CTmax limit around 35°C that corresponded with the low CTmax limit of tropical species (34–36°C. Tropical species showed a CTmin limit around 9°C similar to the maximum CTmin of temperate species (5–6°C. The maximum CTmin of deep sea species that occur in cold environments (2.5°C matched the low CTmin values (3.2°C of temperate species. Results also indicate that the energy required to activate the enzyme complex (Ei involved in respiratory metabolism of ectotherms changes along the latitudinal gradient of temperature.
RePS: a sequence assembler that masks exact repeats identified from the shotgun data

DEFF Research Database (Denmark)

Wang, Jun; Wong, Gane Ka-Shu; Ni, Peixiang

2002-01-01

We describe a sequence assembler, RePS (repeat-masked Phrap with scaffolding), that explicitly identifies exact 20mer repeats from the shotgun data and removes them prior to the assembly. The established software is used to compute meaningful error probabilities for each base. Clone......-end-pairing information is used to construct scaffolds that order and orient the contigs. We show with real data for human and rice that reasonable assemblies are possible even at coverages of only 4x to 6x, despite having up to 42.2% in exact repeats. Udgivelsesdato: 2002-May...
Influence of tempering temperature on mechanical properties of cast steels

Directory of Open Access Journals (Sweden)

G. Golański

2008-12-01

Full Text Available The paper presents results of research on the influence of tempering temperature on structure and mechanical properties of bainite hardened cast steel: G21CrMoV4 – 6 (L21HMF and G17CrMoV5 – 10 (L17HMF. Investigated cast steels were taken out from internal frames of steam turbines serviced for long time at elevated temperatures. Tempering of the investigated cast steel was carried out within the temperature range of 690 ÷ 730 C (G21CrMoV4 – 6 and 700 ÷ 740 C (G17CrMoV5 – 10. After tempering the cast steels were characterized by a structure of tempered lower bainite with numerous precipitations of carbides. Performed research of mechanical properties has shown that high temperatures of tempering of bainitic structure do not cause decrease of mechanical properties beneath the required minimum.oo It has also been proved that high-temperature tempering (>720 oC ensures high impact energy at the 20% decrease of mechanical properties.
Protein identification and quantification from riverbank grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis.

Science.gov (United States)

George, Iniga S; Fennell, Anne Y; Haynes, Paul A

2015-09-01

Protein sample preparation optimisation is critical for establishing reproducible high throughput proteomic analysis. In this study, two different fractionation sample preparation techniques (in-gel digestion and in-solution digestion) for shotgun proteomics were used to quantitatively compare proteins identified in Vitis riparia leaf samples. The total number of proteins and peptides identified were compared between filter aided sample preparation (FASP) coupled with gas phase fractionation (GPF) and SDS-PAGE methods. There was a 24% increase in the total number of reproducibly identified proteins when FASP-GPF was used. FASP-GPF is more reproducible, less expensive and a better method than SDS-PAGE for shotgun proteomics of grapevine samples as it significantly increases protein identification across biological replicates. Total peptide and protein information from the two fractionation techniques is available in PRIDE with the identifier PXD001399 (http://proteomecentral.proteomexchange.org/dataset/PXD001399). © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
Elucidation of Taste- and Odor-Producing Bacteria and Toxigenic Cyanobacteria in a Midwestern Drinking Water Supply Reservoir by Shotgun Metagenomic Analysis.

Science.gov (United States)

Otten, Timothy G; Graham, Jennifer L; Harris, Theodore D; Dreher, Theo W

2016-09-01

While commonplace in clinical settings, DNA-based assays for identification or enumeration of drinking water pathogens and other biological contaminants remain widely unadopted by the monitoring community. In this study, shotgun metagenomics was used to identify taste-and-odor producers and toxin-producing cyanobacteria over a 2-year period in a drinking water reservoir. The sequencing data implicated several cyanobacteria, including Anabaena spp., Microcystis spp., and an unresolved member of the order Oscillatoriales as the likely principal producers of geosmin, microcystin, and 2-methylisoborneol (MIB), respectively. To further demonstrate this, quantitative PCR (qPCR) assays targeting geosmin-producing Anabaena and microcystin-producing Microcystis were utilized, and these data were fitted using generalized linear models and compared with routine monitoring data, including microscopic cell counts, sonde-based physicochemical analyses, and assays of all inorganic and organic nitrogen and phosphorus forms and fractions. The qPCR assays explained the greatest variation in observed geosmin (adjusted R(2) = 0.71) and microcystin (adjusted R(2) = 0.84) concentrations over the study period, highlighting their potential for routine monitoring applications. The origin of the monoterpene cyclase required for MIB biosynthesis was putatively linked to a periphytic cyanobacterial mat attached to the concrete drinking water inflow structure. We conclude that shotgun metagenomics can be used to identify microbial agents involved in water quality deterioration and to guide PCR assay selection or design for routine monitoring purposes. Finally, we offer estimates of microbial diversity and metagenomic coverage of our data sets for reference to others wishing to apply shotgun metagenomics to other lacustrine systems. Cyanobacterial toxins and microbial taste-and-odor compounds are a growing concern for drinking water utilities reliant upon surface water resources. Specific
PatternLab for proteomics: a tool for differential shotgun proteomics

Directory of Open Access Journals (Sweden)

Yates John R

2008-07-01

Full Text Available Abstract Background A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform semi-relative protein quantitation in shotgun proteomics data by correlating the number of tandem mass spectra obtained for each protein, or "spectral count", with its abundance in a mixture; however, two issues have remained open: how to normalize spectral counting data and how to efficiently pinpoint differences between profiles. Moreover, Chen et al. recently showed how to increase the number of identified proteins in shotgun proteomics by analyzing samples with different MS-compatible detergents while performing proteolytic digestion. The latter introduced new challenges as seen from the data analysis perspective, since replicate readings are not acquired. Results To address the open issues above, we present a program termed PatternLab for proteomics. This program implements existing strategies and adds two new methods to pinpoint differences in protein profiles. The first method, ACFold, addresses experiments with less than three replicates from each state or having assays acquired by different protocols as described by Chen et al. ACFold uses a combined criterion based on expression fold changes, the AC test, and the false-discovery rate, and can supply a "bird's-eye view" of differentially expressed proteins. The other method addresses experimental designs having multiple readings from each state and is referred to as nSVM (natural support vector machine because of its roots in evolutionary computing and in statistical learning theory. Our observations suggest that nSVM's niche comprises projects that select a minimum set of proteins for classification purposes; for example, the development of an early detection kit for a given pathology. We demonstrate the effectiveness of each method on experimental data and confront them with existing strategies
Dry matter intake and digestibility of temperate pastures ...

African Journals Online (AJOL)

The aim of this study was to evaluate the effect of sorghum grain supplementation on total and forage dry matter (DM) intake and digestibility of wethers and heifers consuming temperate pasture. Twenty four Corriedale x Milchschaf wethers and 24 crossbred heifers fed temperate pasture were non-supplemented or ...
Global analysis of threat status reveals higher extinction risk in tropical than in temperate bird sister species

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Reif Jiří

2016-06-01

Full Text Available Given increasing pressures upon biodiversity, identification of species’ traits related to elevated extinction risk is useful for more efficient allocation of limited resources for nature conservation. Despite its need, such a global analysis was lacking in the case of birds. Therefore, we performed this exercise for avian sister species using information about their global extinction risk from IUCN Red List. We focused on 113 pairs of sister species, each containing a threatened and an unthreatened species to factor out the effects of common evolutionary history on the revealed relationship. We collected data on five traits with expected relationships to species’ extinction risk based on previous studies performed at regional or national levels: breeding habitat (recognizing forest, grassland, wetland and oceanic species, latitudinal range position (temperate and tropics species, migration strategy (migratory and resident species, diet (carnivorous, insectivorous, herbivorous and omnivorous species and body mass. We related the extinction risk using IUCN threat level categories to species’ traits using generalised linear mixed effects models expecting lower risk for forest, temperate, omnivorous and smaller-bodied species. Our expectation was confirmed only in the case of latitudinal range position, as we revealed higher threat level for tropical than for temperate species. This relationship was robust to different methods of threat level expression and cannot be explained by a simple association of high bird species richness with the tropical zone. Instead, it seems that tropical species are more threatened because of their intrinsic characteristics such as slow life histories, adaptations to stable environments and small geographic ranges. These characteristics are obviously disadvantageous in conditions of current human-induced environmental perturbations. Moreover, given the absence of habitat effects, our study indicates that such
Shotgun metaproteomics of the human distal gut microbiota

Energy Technology Data Exchange (ETDEWEB)

VerBerkmoes, N.C.; Russell, A.L.; Shah, M.; Godzik, A.; Rosenquist, M.; Halfvarsson, J.; Lefsrud, M.G.; Apajalahti, J.; Tysk, C.; Hettich, R.L.; Jansson, Janet K.

2008-10-15

The human gut contains a dense, complex and diverse microbial community, comprising the gut microbiome. Metagenomics has recently revealed the composition of genes in the gut microbiome, but provides no direct information about which genes are expressed or functioning. Therefore, our goal was to develop a novel approach to directly identify microbial proteins in fecal samples to gain information about the genes expressed and about key microbial functions in the human gut. We used a non-targeted, shotgun mass spectrometry-based whole community proteomics, or metaproteomics, approach for the first deep proteome measurements of thousands of proteins in human fecal samples, thus demonstrating this approach on the most complex sample type to date. The resulting metaproteomes had a skewed distribution relative to the metagenome, with more proteins for translation, energy production and carbohydrate metabolism when compared to what was earlier predicted from metagenomics. Human proteins, including antimicrobial peptides, were also identified, providing a non-targeted glimpse of the host response to the microbiota. Several unknown proteins represented previously undescribed microbial pathways or host immune responses, revealing a novel complex interplay between the human host and its associated microbes.
Effect of tempering upon the tensile properties of a nanostructured bainitic steel

International Nuclear Information System (INIS)

Hasan, H.S.; Peet, M.J.; Avettand-Fènoël, M-N.; Bhadeshia, H.K.D.H.

2014-01-01

The tensile properties of a nanostructured carbide-free bainitic steel formed at 200–250 °C are compared against those after tempering sufficiently to remove the retained austenite. Although significant ductility is observed following tempering, a comparison of tempered and untempered samples shows that it is in fact reduced when a comparison is made at identical strength. The shape of the stress–strain curves shows clear evidence that the capacity for work hardening is reduced with the loss of austenite. The nanostructure of the steel transformed at 250 °C is examined by transmission electron microscopy, to compare the as-transformed to the tempered structure. In this case after tempering at 500 °C the energy absorbed during the tensile test is lower, due to the lower strength. Reduction of strength is caused by the slight coarsening of the bainite plates, and lower dislocation density after tempering. Considering the formation of carbide particles in high strength steel, impressive ductility is exhibited even in the tempered condition
Effect of tempering upon the tensile properties of a nanostructured bainitic steel

Energy Technology Data Exchange (ETDEWEB)

Hasan, H.S. [University of Technology, Baghdad (Iraq); Peet, M.J., E-mail: mjp54@cam.ac.uk [Department of Materials Science and Metallurgy, 27 Charles Babbage Road, Cambridge CB3 0FS (United Kingdom); Avettand-Fènoël, M-N. [Unité Matériaux Et Transformations (UMET) UMR CNRS 8207, Université, Lille 1, 59655 Villeneuve D' ASCQ (France); Bhadeshia, H.K.D.H. [Department of Materials Science and Metallurgy, 27 Charles Babbage Road, Cambridge CB3 0FS (United Kingdom)

2014-10-06

The tensile properties of a nanostructured carbide-free bainitic steel formed at 200–250 °C are compared against those after tempering sufficiently to remove the retained austenite. Although significant ductility is observed following tempering, a comparison of tempered and untempered samples shows that it is in fact reduced when a comparison is made at identical strength. The shape of the stress–strain curves shows clear evidence that the capacity for work hardening is reduced with the loss of austenite. The nanostructure of the steel transformed at 250 °C is examined by transmission electron microscopy, to compare the as-transformed to the tempered structure. In this case after tempering at 500 °C the energy absorbed during the tensile test is lower, due to the lower strength. Reduction of strength is caused by the slight coarsening of the bainite plates, and lower dislocation density after tempering. Considering the formation of carbide particles in high strength steel, impressive ductility is exhibited even in the tempered condition.

HOMICIDE BY CERVICAL SPINAL CORD GUNSHOT INJURY WITH SHOTGUN FIRE PELLETS: CASE REPORT

Directory of Open Access Journals (Sweden)

Dana Turliuc, Serban Turliuc, Iustin Mihailov, Andrei Cucu, Gabriel Dumitrescu,Claudia Costea

2015-10-01

Full Text Available This case present a rare forensic case of cervical spinal gunshot injury of a female by her husband, a professional hunter, during a family fight with a shotgun fire pellets. The gunshot destroyed completely the cervical spinal cord, without injury to the neck vessels and organs and with the patient survival for seven days. We discuss notions of judicial ballistics, assessment of the patient with spinal cord gunshot injury and therapeutic strategies. Even if cervical spine gunshot injuries are most of the times lethal for majority of patients, the surviving patients need the coordination of a multidisciplinary surgical team to ensure the optimal functional prognostic.
Intensity of Urban Heat Islands in Tropical and Temperate Climates

Directory of Open Access Journals (Sweden)

Margarete Cristiane de Costa Trindade Amorim

2017-12-01

Full Text Available Nowadays, most of the Earth’s population lives in urban areas. The replacement of vegetation by buildings and the general soil sealing, associated with human activity, lead to a rise in cities temperature, resulting in the formation of urban heat islands. This article aims to evaluate the intensity and the hourly maintenance of the atmospheric heat islands in two climates: one tropical (Presidente Prudente, Brazil and one temperate (Rennes, France throughout 2016. For this, air temperature and hourly averages were measured and calculated using both a HOBO datalogger (U23-002—protected under the same RS3 brand and weather stations Davis Vantage PRO 2. The daily evolution of the heat islands presented characteristics that varied according to the hours and seasons of the year. For both Rennes and Presidente Prudente, the largest magnitudes occurred overnight, being more greatly expressed in the tropical environment and during the driest months (winter in the tropical city and summer in the temperate one. The variability of synoptic conditions from one month to another also leads to a great heterogeneity of UHI intensity throughout the year.
Comparison of the segregation behavior between tempered martensite and tempered bainite in Ni-Cr-Mo high strength low alloy RPV steel

Energy Technology Data Exchange (ETDEWEB)

Park, Sang Gyu; Kim, Min Chul; Kim, Hyung Jun; Lee, Bong Sang [Korea Atomic Energy Research Institute, Daejeon (Korea, Republic of)

2012-05-15

SA508 Gr.4N Ni-Cr-Mo low alloy steel has an superior fracture toughness and strength, compared to commercial Mn-Mo-Ni low alloy RPV steel SA508 Gr.3. Higher strength and fracture toughness of low alloy steels could be obtained by adding Ni and Cr. So several were performed on researches on SA508 Gr.4N low alloy steel for a RPV application. The operation temperature and term of a reactor pressure vessel is more than 300 .deg. C and over 40 years. Therefore, in order to apply the SA508 Gr.4N low alloy steel for a reactor pressure vessel, the resistance of thermal embrittlement in the high temperature range including temper embrittlement is required. S. Raoul reported that the susceptibility to temper embrittlement was increasing a function of the cooling rate in SA533 steel, which suggests the martensitic microstructures resulting from increased cooling rates are more susceptible to temper embrittlement. However, this result has not been proved yet. So the comparison of temper embrittlement behavior was made between martensitic microstructure and bainitic microstructure with a viewpoint of boundary features in SA508 Gr.4N, which have mixture of tempered bainite/martensite. We have compared temper embrittlement behaviors of SA508 Gr.4N low alloy steel with changing volume fraction of martensite. The mechanical properties of these low alloy steels were evaluated after a long-term heat treatment. Then, the the segregated boundaries were observed and segregation behavior was analyzed by AES. In order to compare the misorientation distributions of model alloys, grain boundary structures were measured with EBSD
Interactive Effects of Temperature and UV Radiation on Photosynthesis of Chlorella Strains from Polar, Temperate and Tropical Environments: Differential Impacts on Damage and Repair

Science.gov (United States)

Wong, Chiew-Yen; Teoh, Ming-Li; Phang, Siew-Moi; Lim, Phaik-Eem; Beardall, John

2015-01-01

Global warming and ozone depletion, and the resulting increase of ultraviolet radiation (UVR), have far-reaching impacts on biota, especially affecting the algae that form the basis of the food webs in aquatic ecosystems. The aim of the present study was to investigate the interactive effects of temperature and UVR by comparing the photosynthetic responses of similar taxa of Chlorella from Antarctic (Chlorella UMACC 237), temperate (Chlorella vulgaris UMACC 248) and tropical (Chlorella vulgaris UMACC 001) environments. The cultures were exposed to three different treatments: photosynthetically active radiation (PAR; 400–700 nm), PAR plus ultraviolet-A (320–400 nm) radiation (PAR + UV-A) and PAR plus UV-A and ultraviolet-B (280–320 nm) radiation (PAR + UV-A + UV-B) for one hour in incubators set at different temperatures. The Antarctic Chlorella was exposed to 4, 14 and 20°C. The temperate Chlorella was exposed to 11, 18 and 25°C while the tropical Chlorella was exposed to 24, 28 and 30°C. A pulse-amplitude modulated (PAM) fluorometer was used to assess the photosynthetic response of microalgae. Parameters such as the photoadaptive index (Ek) and light harvesting efficiency (α) were determined from rapid light curves. The damage (k) and repair (r) rates were calculated from the decrease in ΦPSIIeff over time during exposure response curves where cells were exposed to the various combinations of PAR and UVR, and fitting the data to the Kok model. The results showed that UV-A caused much lower inhibition than UV-B in photosynthesis in all Chlorella isolates. The three isolates of Chlorella from different regions showed different trends in their photosynthesis responses under the combined effects of UVR (PAR + UV-A + UV-B) and temperature. In accordance with the noted strain-specific characteristics, we can conclude that the repair (r) mechanisms at higher temperatures were not sufficient to overcome damage caused by UVR in the Antarctic Chlorella strain
Interactive Effects of Temperature and UV Radiation on Photosynthesis of Chlorella Strains from Polar, Temperate and Tropical Environments: Differential Impacts on Damage and Repair.

Directory of Open Access Journals (Sweden)

Chiew-Yen Wong

Full Text Available Global warming and ozone depletion, and the resulting increase of ultraviolet radiation (UVR, have far-reaching impacts on biota, especially affecting the algae that form the basis of the food webs in aquatic ecosystems. The aim of the present study was to investigate the interactive effects of temperature and UVR by comparing the photosynthetic responses of similar taxa of Chlorella from Antarctic (Chlorella UMACC 237, temperate (Chlorella vulgaris UMACC 248 and tropical (Chlorella vulgaris UMACC 001 environments. The cultures were exposed to three different treatments: photosynthetically active radiation (PAR; 400-700 nm, PAR plus ultraviolet-A (320-400 nm radiation (PAR + UV-A and PAR plus UV-A and ultraviolet-B (280-320 nm radiation (PAR + UV-A + UV-B for one hour in incubators set at different temperatures. The Antarctic Chlorella was exposed to 4, 14 and 20°C. The temperate Chlorella was exposed to 11, 18 and 25°C while the tropical Chlorella was exposed to 24, 28 and 30°C. A pulse-amplitude modulated (PAM fluorometer was used to assess the photosynthetic response of microalgae. Parameters such as the photoadaptive index (Ek and light harvesting efficiency (α were determined from rapid light curves. The damage (k and repair (r rates were calculated from the decrease in ΦPSIIeff over time during exposure response curves where cells were exposed to the various combinations of PAR and UVR, and fitting the data to the Kok model. The results showed that UV-A caused much lower inhibition than UV-B in photosynthesis in all Chlorella isolates. The three isolates of Chlorella from different regions showed different trends in their photosynthesis responses under the combined effects of UVR (PAR + UV-A + UV-B and temperature. In accordance with the noted strain-specific characteristics, we can conclude that the repair (r mechanisms at higher temperatures were not sufficient to overcome damage caused by UVR in the Antarctic Chlorella strain
A framework for intelligent data acquisition and real-time database searching for shotgun proteomics.

Science.gov (United States)

Graumann, Johannes; Scheltema, Richard A; Zhang, Yong; Cox, Jürgen; Mann, Matthias

2012-03-01

In the analysis of complex peptide mixtures by MS-based proteomics, many more peptides elute at any given time than can be identified and quantified by the mass spectrometer. This makes it desirable to optimally allocate peptide sequencing and narrow mass range quantification events. In computer science, intelligent agents are frequently used to make autonomous decisions in complex environments. Here we develop and describe a framework for intelligent data acquisition and real-time database searching and showcase selected examples. The intelligent agent is implemented in the MaxQuant computational proteomics environment, termed MaxQuant Real-Time. It analyzes data as it is acquired on the mass spectrometer, constructs isotope patterns and SILAC pair information as well as controls MS and tandem MS events based on real-time and prior MS data or external knowledge. Re-implementing a top10 method in the intelligent agent yields similar performance to the data dependent methods running on the mass spectrometer itself. We demonstrate the capabilities of MaxQuant Real-Time by creating a real-time search engine capable of identifying peptides "on-the-fly" within 30 ms, well within the time constraints of a shotgun fragmentation "topN" method. The agent can focus sequencing events onto peptides of specific interest, such as those originating from a specific gene ontology (GO) term, or peptides that are likely modified versions of already identified peptides. Finally, we demonstrate enhanced quantification of SILAC pairs whose ratios were poorly defined in survey spectra. MaxQuant Real-Time is flexible and can be applied to a large number of scenarios that would benefit from intelligent, directed data acquisition. Our framework should be especially useful for new instrument types, such as the quadrupole-Orbitrap, that are currently becoming available.
Corrosion fatigue in nitrocarburized quenched and tempered steels

Science.gov (United States)

Khani, M. Karim; Dengel, D.

1996-05-01

In order to investigate the fatigue strength and fracture mechanism of salt bath nitrocarburized steels, specimens of the steels SAE 4135 and SAE 4140, in a quenched and tempered state, and additionally in a salt bath nitrocarburized and oxidizing cooled state as well as in a polished (after the oxidizing cooling) and renewed oxidized state, were subjected to comparative rotating bending fatigue tests in inert oil and 5 pct NaCl solution. In addition, some of the quenched and tempered specimens of SAE 4135 material were provided with an approximately 50-μm-thick electroless Ni-P layer, in order to compare corrosion fatigue behavior between the Ni-P layer and the nitride layers. Long-life corrosion fatigue tests of SAE 4135 material were carried out under small stresses in the long-life range up to 108 cycles with a test frequency of 100 Hz. Fatigue tests of SAE 4140 material were carried out in the range of finite life (low-cycle range) with a test frequency of 13 Hz. The results show that the 5 pct NaCl environment drastically reduced fatigue life, but nitrocarburizing plus oxidation treatment was found to improve the corrosion fatigue life over that of untreated and Ni-P coated specimens. The beneficial effect of nitrocarburizing followed by oxidation treatment on cor-rosion fatigue life results from the protection rendered by the compound layer by means of a well-sealed oxide layer, whereby the pores present in the compound layer fill up with oxides. The role of inclusions in initiating fatigue cracks was investigated. It was found that under corrosion fatigue conditions, the fatigue cracks started at cavities along the interfaces of MnS inclusions and matrix in the case of quenched and tempered specimens. The nitrocarburized specimens, however, showed a superposition of pitting corrosion and corrosion fatigue in which pores and nonmetallic inclusions in the compound layer play a predominant role concerning the formation of pits in the substrate.
A comparative assessment of heavy metal accumulation in soft parts and byssus of mussels from subarctic, temperate, subtropical and tropical marine environments

International Nuclear Information System (INIS)

Szefer, P.; Fowler, S.W.; Ikuta, K.; Osuna, F. Paez; Ali, A.A.; Kim, B.-S.; Fernandes, H.M.; Belzunce, M.-J.; Guterstam, B.; Kunzendorf, H.; Wolowicz, M.; Hummel, H.; Deslous-Paoli, M.

2006-01-01

Existing data on metal concentrations in mussels from subarctic, temperate, subtropical and tropical waters were analyzed using multivariate statistics in order to assess regional variations in metal contamination. Potential errors were reduced by only analyzing data from surveys that employed the same protocols, analytical methodologies and analysts. Factor analysis demonstrated that mussels inhabiting extremely contaminated areas (e.g. from Japanese and Swedish metallurgy sources) could be separated from mussels from other contaminated areas, and that metals such as Cd, Pb, Cu and Zn could be used to identify heavily contaminated samples while Co, Fe, Cr and Ni concentrations were good markers for exposure to inputs from different industrial sources. Furthermore byssus, like soft tissue, selectively and sensitively reflects variations of certain metal concentrations in ambient waters and thus serves as a reliable biomonitor for these contaminants in a variety of coastal and estuarine areas. - Byssus of mytilids, like soft tissues can be used as efficient biomonitor for heavy metals in the marine environment
A comparative assessment of heavy metal accumulation in soft parts and byssus of mussels from subarctic, temperate, subtropical and tropical marine environments

Energy Technology Data Exchange (ETDEWEB)

Szefer, P. [Department of Food Sciences, Medical University of Gdansk, Al. Gen. J. Hallera 107, PL 80-416 Gdansk (Poland)]. E-mail: pszef@amg.gda.pl; Fowler, S.W. [IAEA Marine Environment Laboratory, 4 Quai Antoine 1er, MC-98000 (Monaco); Ikuta, K. [Laboratory of Aquatic Environment and Ecology, Department of Fisheries, Faculty of Agriculture, Miyazaki University, 889-21 Miyazaki (Japan); Osuna, F. Paez [Institute of Marine Sciences and Limnology, Mazatlan Station, National Autonomous University of Mexico, Mazatlan 82000, Sinaloa (Mexico); Ali, A.A. [Faculty of Science, Arts and Education, University of Aden, PO Box 6014, Khormaksar, Aden (Yemen); Kim, B.-S. [School of Earth and Environmental Science, Seoul National University, 56-1 Shillimdong, 151-742 (Korea, Republic of); Fernandes, H.M. [Instituto de Radioprotecao e Dosimetria, Cz. Postal 37 750 - CEP: 22642-970, Rio de Janeiro (Brazil); Belzunce, M.-J. [Instituto Tecnnologico Pesquero y Alimentario, Dpto de Oceanografia y Medio Ambiente Marino, Herrera Kaia, Portualdea z/g, 20110 Pasaia (Gipuzkoa) (Spain); Guterstam, B. [Stensund Ecological Center, 61991 Trosa, Sweden and Global Water Partnership Secretariat, Hantverkargatan 5, SE-112 21 Stockholm (Sweden); Kunzendorf, H. [Gamma Dating Center (GDC), Institute of Geography, University of Copenhagen, Oster Voldgage 10 DK-1350 Copenhagen K (Denmark); Wolowicz, M. [Laboratory of Estuarine Ecology, Institute of Oceanography, University of Gdansk, Al. Pilsudskiego 46, 81-378, Gdynia (Poland); Hummel, H. [Centre for Estuarine and Marine Ecology, Netherlands Institute of Ecology, Korringaweg 7, 4401 NT Yerseke (Netherlands); Deslous-Paoli, M. [IFREMER, Unite Ecologie Conchylicole, 1, rue Jean Vilar, 34200 Sete (France)

2006-01-15

Existing data on metal concentrations in mussels from subarctic, temperate, subtropical and tropical waters were analyzed using multivariate statistics in order to assess regional variations in metal contamination. Potential errors were reduced by only analyzing data from surveys that employed the same protocols, analytical methodologies and analysts. Factor analysis demonstrated that mussels inhabiting extremely contaminated areas (e.g. from Japanese and Swedish metallurgy sources) could be separated from mussels from other contaminated areas, and that metals such as Cd, Pb, Cu and Zn could be used to identify heavily contaminated samples while Co, Fe, Cr and Ni concentrations were good markers for exposure to inputs from different industrial sources. Furthermore byssus, like soft tissue, selectively and sensitively reflects variations of certain metal concentrations in ambient waters and thus serves as a reliable biomonitor for these contaminants in a variety of coastal and estuarine areas. - Byssus of mytilids, like soft tissues can be used as efficient biomonitor for heavy metals in the marine environment.
Mechanism of Secondary Hardening in Rapid Tempering of Dual-Phase Steel

Science.gov (United States)

Saha, Dulal Chandra; Nayak, Sashank S.; Biro, Elliot; Gerlich, Adrian P.; Zhou, Y.

2014-12-01

Dual-phase steel with ferrite-martensite-bainite microstructure exhibited secondary hardening in the subcritical heat affected zone during fiber laser welding. Rapid isothermal tempering conducted in a Gleeble simulator also indicated occurrence of secondary hardening at 773 K (500 °C), as confirmed by plotting the tempered hardness against the Holloman-Jaffe parameter. Isothermally tempered specimens were characterized by analytic transmission electron microscopy and high-angle annular dark-field imaging. The cementite (Fe3C) and TiC located in the bainite phase of DP steel decomposed upon rapid tempering to form needle-shaped Mo2C (aspect ratio ranging from 10 to 25) and plate-shaped M4C3 carbides giving rise to secondary hardening. Precipitation of these thermodynamically stable and coherent carbides promoted the hardening phenomenon. However, complex carbides were only seen in the tempered bainite and were not detected in the tempered martensite. The martensite phase decomposed into ferrite and spherical Fe3C, and interlath-retained austenite decomposed into ferrite and elongated carbide.
Method to Predict Tempering of Steels Under Non-isothermal Conditions

Science.gov (United States)

Poirier, D. R.; Kohli, A.

2017-05-01

A common way of representing the tempering responses of steels is with a "tempering parameter" that includes the effect of temperature and time on hardness after hardening. Such functions, usually in graphical form, are available for many steels and have been applied for isothermal tempering. In this article, we demonstrate that the method can be extended to non-isothermal conditions. Controlled heating experiments were done on three grades in order to verify the method.
On the evolution of Cu-Ni-rich bridges of Alnico alloys with tempering

Energy Technology Data Exchange (ETDEWEB)

Fan, M. [Department of Materials Science and Engineering, North Carolina State University, Campus Box 7907, Raleigh, NC 27695-7907 (United States); Liu, Y. [Department of Materials Science and Engineering, North Carolina State University, Campus Box 7907, Raleigh, NC 27695-7907 (United States); Analytical Instrumentation Facility, North Carolina State University, Raleigh, NC 27695 (United States); Jha, Rajesh; Dulikravich, George S. [Departments of Mechanical and Materials Engineering, MAIDROC, Florida International University, EC3462, 10555 West Flagler Street, Miami, FL 33174 (United States); Schwartz, J.; Koch, C.C. [Department of Materials Science and Engineering, North Carolina State University, Campus Box 7907, Raleigh, NC 27695-7907 (United States)

2016-12-15

Tempering is a critical step in Alnico alloy processing, yet the effects of tempering on microstructure have not been well studied. Here we report these effects, and in particular the effects on the Cu-Ni bridges. Energy-dispersive X-ray spectroscopy (EDS) maps and line scans show that tempering changes the elemental distribution in the Cu-Ni bridges, but not the morphology and distribution of Cu-bridges. The Cu concentration in the Cu-Ni bridges increases after tempering while other element concentrations decrease, especially Ni and Al. Furthermore, tempering sharpens the Cu bridge boundaries. These effects are primarily related to the large 2C{sub 44}/(C{sub 11}−C{sub 12}) ratio for Cu, largest of all elements in Alnico. In addition, the Ni-Cu loops around the α{sub 1} phases become inconspicuous with tempering. The diffusion of Fe and Co to the α{sub 1} phase during tempering, which increases the difference of saturation magnetization between the α{sub 1} and α{sub 2} phases, is observed by EDS. In summary, α{sub 1}, α{sub 2} and Cu-bridges are concentrated with their major elements during tempering which improves the magnetic properties. The formation of these features formed through elemental diffusion is discussed via energy theories. - Highlights: • Tempering changes the elemental distribution in the Cu-Ni bridges, but not morphology. • Cu concentration in the Cu-Ni bridges increases after tempering while others decrease. • These effects are related to the large 2C{sub 44}/(C{sub 11}−C{sub 12}) ratio for Cu. • The Ni-Cu loops around the α{sub 1} phases become inconspicuous with tempering. • The diffusion of Fe and Co to the α{sub 1} phase during tempering is observed by EDS.
Physiological underpinnings associated with differences in pace of life and metabolic rate in north temperate and neotropical birds.

Science.gov (United States)

Jimenez, Ana Gabriela; Cooper-Mullin, Clara; Calhoon, Elisabeth A; Williams, Joseph B

2014-07-01

Animal life-history traits fall within limited ecological space with animals that have high reproductive rates having short lives, a continuum referred to as a "slow-fast" life-history axis. Animals of the same body mass at the slow end of the life-history continuum are characterized by low annual reproductive output and low mortality rate, such as is found in many tropical birds, whereas at the fast end, rates of reproduction and mortality are high, as in temperate birds. These differences in life-history traits are thought to result from trade-offs between investment in reproduction or self-maintenance as mediated by the biotic and abiotic environment. Thus, tropical and temperate birds provide a unique system to examine physiological consequences of life-history trade-offs at opposing ends of the "pace of life" spectrum. We have explored the implications of these trade-offs at several levels of physiological organization including whole-animal, organ systems, and cells. Tropical birds tend to have higher survival, slower growth, lower rates of whole-animal basal metabolic rate and peak metabolic rate, and smaller metabolically active organs compared with temperate birds. At the cellular level, primary dermal fibroblasts from tropical birds tend to have lower cellular metabolic rates and appear to be more resistant to oxidative cell stress than those of temperate birds. However, at the subcellular level, lipid peroxidation rates, a measure of the ability of lipid molecules within the cell membranes to thwart the propagation of oxidative damage, appear not to be different between tropical and temperate species. Nevertheless, lipids in mitochondrial membranes of tropical birds tend to have increased concentrations of plasmalogens (phospholipids with antioxidant properties), and decreased concentrations of cardiolipin (a complex phospholipid in the electron transport chain) compared with temperate birds.
Genome-based comparative analyses of Antarctic and temperate species of Paenibacillus.

Directory of Open Access Journals (Sweden)

Melissa Dsouza

Full Text Available Antarctic soils represent a unique environment characterised by extremes of temperature, salinity, elevated UV radiation, low nutrient and low water content. Despite the harshness of this environment, members of 15 bacterial phyla have been identified in soils of the Ross Sea Region (RSR. However, the survival mechanisms and ecological roles of these phyla are largely unknown. The aim of this study was to investigate whether strains of Paenibacillus darwinianus owe their resilience to substantial genomic changes. For this, genome-based comparative analyses were performed on three P. darwinianus strains, isolated from gamma-irradiated RSR soils, together with nine temperate, soil-dwelling Paenibacillus spp. The genome of each strain was sequenced to over 1,000-fold coverage, then assembled into contigs totalling approximately 3 Mbp per genome. Based on the occurrence of essential, single-copy genes, genome completeness was estimated at approximately 88%. Genome analysis revealed between 3,043-3,091 protein-coding sequences (CDSs, primarily associated with two-component systems, sigma factors, transporters, sporulation and genes induced by cold-shock, oxidative and osmotic stresses. These comparative analyses provide an insight into the metabolic potential of P. darwinianus, revealing potential adaptive mechanisms for survival in Antarctic soils. However, a large proportion of these mechanisms were also identified in temperate Paenibacillus spp., suggesting that these mechanisms are beneficial for growth and survival in a range of soil environments. These analyses have also revealed that the P. darwinianus genomes contain significantly fewer CDSs and have a lower paralogous content. Notwithstanding the incompleteness of the assemblies, the large differences in genome sizes, determined by the number of genes in paralogous clusters and the CDS content, are indicative of genome content scaling. Finally, these sequences are a resource for further
Elucidation of taste- and odor-producing bacteria and toxigenic cyanobacteria in a Midwestern drinking water supply reservoir by shotgun metagenomics analysis

Science.gov (United States)

Otten, Timothy; Graham, Jennifer L.; Harris, Theodore D.; Dreher, Theo

2016-01-01

While commonplace in clinical settings, DNA-based assays for identification or enumeration of drinking water pathogens and other biological contaminants remain widely unadopted by the monitoring community. In this study, shotgun metagenomics was used to identify taste-and-odor producers and toxin-producing cyanobacteria over a 2-year period in a drinking water reservoir. The sequencing data implicated several cyanobacteria, including Anabaena spp.,Microcystis spp., and an unresolved member of the order Oscillatoriales as the likely principal producers of geosmin, microcystin, and 2-methylisoborneol (MIB), respectively. To further demonstrate this, quantitative PCR (qPCR) assays targeting geosmin-producing Anabaena and microcystin-producing Microcystis were utilized, and these data were fitted using generalized linear models and compared with routine monitoring data, including microscopic cell counts, sonde-based physicochemical analyses, and assays of all inorganic and organic nitrogen and phosphorus forms and fractions. The qPCR assays explained the greatest variation in observed geosmin (adjusted R2 = 0.71) and microcystin (adjusted R2 = 0.84) concentrations over the study period, highlighting their potential for routine monitoring applications. The origin of the monoterpene cyclase required for MIB biosynthesis was putatively linked to a periphytic cyanobacterial mat attached to the concrete drinking water inflow structure. We conclude that shotgun metagenomics can be used to identify microbial agents involved in water quality deterioration and to guide PCR assay selection or design for routine monitoring purposes. Finally, we offer estimates of microbial diversity and metagenomic coverage of our data sets for reference to others wishing to apply shotgun metagenomics to other lacustrine systems.
SWFSC/MMTD/CCE: Leatherback Use of Temperate Habitat (LUTH) 2008

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Leatherback Use of Temperate Habitat (LUTH) survey is an ecosystem assessment of temperate foraging habitats of endangered leatherback turtles off the coast of...
Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain

OpenAIRE

Yang, Xiang; Noyes, Noelle R.; Doster, Enrique; Martin, Jennifer N.; Linke, Lyndsey M.; Magnuson, Roberta J.; Yang, Hua; Geornaras, Ifigenia; Woerner, Dale R.; Jones, Kenneth L.; Ruiz, Jaime; Boucher, Christina; Morley, Paul S.; Belk, Keith E.

2016-01-01

Foodborne illnesses associated with pathogenic bacteria are a global public health and economic challenge. The diversity of microorganisms (pathogenic and nonpathogenic) that exists within the food and meat industries complicates efforts to understand pathogen ecology. Further, little is known about the interaction of pathogens within the microbiome throughout the meat production chain. Here, a metagenomic approach and shotgun sequencing technology were used as tools to detect pathogenic bact...
Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses

Science.gov (United States)

The aim of this work was to study the effects of Fe and Mn deficiencies on the xylem sap proteome of tomato using a shotgun proteomic approach, with the final goal of elucidating plant response mechanisms to these stresses. This approach yielded 643 proteins reliably identified and quantified with 7...
Simulation of Residual Stresses at Holes in Tempered Glass

DEFF Research Database (Denmark)

Nielsen, Jens Henrik; Olesen, John Forbes; Poulsen, Peter Noe

2010-01-01

This work presents a full 3D numerical study of the residual stresses in tempered (toughened) glass near holes using Narayanaswamy’s model for the tempering process. It is the objective of the paper to elucidate the influence on the minimal residual compressive stresses at holes from variations in...
Identification of antimicrobial resistance genes in multidrug-resistant clinical Bacteroides fragilis isolates by whole genome shotgun sequencing

DEFF Research Database (Denmark)

Sydenham, Thomas Vognbjerg; Sóki, József; Hasman, Henrik

2015-01-01

Bacteroides fragilis constitutes the most frequent anaerobic bacterium causing bacteremia in humans. The genetic background for antimicrobial resistance in B. fragilis is diverse with some genes requiring insertion sequence (IS) elements inserted upstream for increased expression. To evaluate whole...... genome shotgun sequencing as a method for predicting antimicrobial resistance properties, one meropenem resistant and five multidrug-resistant blood culture isolates were sequenced and antimicrobial resistance genes and IS elements identified using ResFinder 2.1 (http...

OTU analysis using metagenomic shotgun sequencing data.

Directory of Open Access Journals (Sweden)

Xiaolin Hao

Full Text Available Because of technological limitations, the primer and amplification biases in targeted sequencing of 16S rRNA genes have veiled the true microbial diversity underlying environmental samples. However, the protocol of metagenomic shotgun sequencing provides 16S rRNA gene fragment data with natural immunity against the biases raised during priming and thus the potential of uncovering the true structure of microbial community by giving more accurate predictions of operational taxonomic units (OTUs. Nonetheless, the lack of statistically rigorous comparison between 16S rRNA gene fragments and other data types makes it difficult to interpret previously reported results using 16S rRNA gene fragments. Therefore, in the present work, we established a standard analysis pipeline that would help confirm if the differences in the data are true or are just due to potential technical bias. This pipeline is built by using simulated data to find optimal mapping and OTU prediction methods. The comparison between simulated datasets revealed a relationship between 16S rRNA gene fragments and full-length 16S rRNA sequences that a 16S rRNA gene fragment having a length >150 bp provides the same accuracy as a full-length 16S rRNA sequence using our proposed pipeline, which could serve as a good starting point for experimental design and making the comparison between 16S rRNA gene fragment-based and targeted 16S rRNA sequencing-based surveys possible.
Investigation on tempering of granular bainite in an offshore platform steel

Energy Technology Data Exchange (ETDEWEB)

Zhou, Yanlei; Jia, Tao; Zhang, Xiangjun [The State Key Laboratory of Rolling and Automation, Northeastern University, P.O. Box 105, No. 11, Lane 3, Wenhua Road, HePing District, Shenyang 110819 (China); Liu, Zhenyu, E-mail: zyliu@mail.neu.edu.cn [The State Key Laboratory of Rolling and Automation, Northeastern University, P.O. Box 105, No. 11, Lane 3, Wenhua Road, HePing District, Shenyang 110819 (China); Misra, R.D.K. [Department of Metallurgical and Materials Engineering, University of Texas at El Paso, 500 W. University Avenue, El Paso, TX 79968-0521 (United States)

2015-02-25

Granular bainite, where M-A constituents dispersed in bainitic ferrite matrix usually presents at the half thickness region in thermo-mechanically processed heavy gauge offshore platform steel. In the present work, the decomposition of M-A constituents during tempering at 600 °C was firstly revealed by transmission electron microscopy (TEM) analysis, which primarily involves the precipitation of cementite, recovery and recrystallization of highly dislocated ferrite matrix. Then, the effect of tempering on mechanical properties was investigated by tempering at different temperature for 60 min. Results indicated that, at tempering temperature of 500–600 °C, large quantity of micro-alloying carbides precipitated and partially compensated the loss of strength mainly due to the decomposition of M-A constituents. Compared with the as-rolled state, the decomposition of M-A constituents and softening of bainitic ferrite matrix after tempering have resulted in higher density of microvoids and substantial plastic deformation before impact failure.
Wear behavior of tempered and borided tool steels under various conditions

International Nuclear Information System (INIS)

Al-Haidary, T. J.; Faleh, M. N.

2000-01-01

. Tool steel 61CrV5, 50 NiCr13 and X1000Cr MoV51 were used in the first stage of this investigation. They have been treated as follows: boriding, boriding and tempering and hardening and tempering. The wear tests were conducted under fixed conditions (150 N/mm 2 , 0.48m/sec) with and without lubricant. The wear rate and coefficient of friction of 61Cr Si V5 steel have been studied in the second stage hoping to find the influence of working conditions on these parameters and then to compare these results with the case of hardening and tempering which is the usual case in the actual working field. The study gives a good indication about the improvement achieved in boriding and tempering cases (∼ 30%) as compared with hardening tempering cases in dry sliding conditions -∼5% with lubricating ones. (authors). 13 refs., 19 figs., 1 table
Tempering of Mn and Mn-Si-V dual-phase steels

Science.gov (United States)

Speich, G. R.; Schwoeble, A. J.; Huffman, G. P.

1983-06-01

Changes in the yield behavior, strength, and ductility of a Mn and a Mn-Si-V d11Al-phase (ferrite-martensite) steel were investigated after tempering one hour at 200 to 600 °C. The change in yield behavior was complex in both steels with the yield strength first increasing and then decreasing as the tempering temperature was increased. This complex behavior is attributed to a combination of factors including carbon segregation to dislocations, a return of discontinuous yielding, and the relief of resid11Al stresses. In contrast, the tensile strength decreased continuously as the tempering temperature was increased in a manner that could be predicted from the change in hardness of the martensite phase using a simple composite strengthening model. The initial tensile ductility (total elongation) of the Mn-Si-V steel was much greater than that of the Mn steel. However, upon tempering up to 400 °C, the ductility of the Mn-Si-V decreased whereas that of the Mn steel increased. As a result, both steels had similar ductilities after tempering at 400 °C or higher temperatures. These results are attributed to the larger amounts of retained austenite in the Mn-Si-V steel (9 pct) compared to the Mn steel (3 pct) and its contribution to tensile ductility by transforming to martensite during plastic straining. Upon tempering at 400 °C, the retained austenite decomposes to bainite and its contribution to tensile ductility is eliminated.
Evolution of Microsatellite Loci of Tropical and Temperate Anguilla Eels

Directory of Open Access Journals (Sweden)

Mei-Chen Tseng

2012-04-01

Full Text Available Anguilla eels are divided into temperate and tropical eels, based on their major distributions. The present study collected two temperate eels, Anguilla japonica and Anguilla anguilla, and two tropical eels, Anguilla marmorata and Anguilla bicolor pacifica, to examine two questions: do temperate and tropical Anguilla eels have different genetic polymorphic patterns?; and do temperate Anguilla japonica and Anguilla anguilla have a closer relationship to each other than to tropical eels? In total, 274 sequences were cloned and sequenced from six conserved microsatellite loci to examine polymorphic patterns of these four catadromous eels. Different mutational events, including substitutions, and repeat-unit deletions and insertions, appeared in major regions, while different point mutations were observed in flanking regions. The results implied that parallel patterns of microsatellite sequences occurred within both tropical and temperate freshwater eels. Consensus flanking sequences of six homologous loci from each of the four species were constructed. Genetic distances ranged from 0.044 (Anguilla bicolor pacifica vs. Anguilla marmorata to 0.061 (Anguilla marmorata vs. Anguilla anguilla. The tree topology suggests the hypothesis of Anguilla japonica and Anguilla anguilla being a sister group must be rejected.
The effects of boro-tempering heat treatment on microstructural properties of ductile iron

International Nuclear Information System (INIS)

Kayali, Yusuf; Yalcin, Yilmaz

2011-01-01

In this study, the effects of boro-tempering heat treatment on microstructural properties of ductile iron were investigated. Test samples with dimensions of 10 x 10 x 55 mm were boronized at 900 o C for 1, 3 and 5 h and then tempered at four different temperatures (250, 300, 350 and 450 o C) for 1 h. Both optical microscopy and scanning electron microscopy were used to reveal the microstructural details of coating and matrix of boro-tempered ductile iron. X-ray diffraction was used to determine the constituents of the coating layer. The boride layer formed on the surface of boro-tempered ductile cast iron is tooth shape form and consisted of FeB and Fe 2 B phases. The thickness of boride layer increases as the boronizing time increases and tempering temperature decreases. Tempering temperature is more effective than boronizing time on the matrix structure. Boro-tempering heat treatment reduces the formation of lower and upper ausferritic matrix temperature according to classical austempering. This causes formation of upper ausferritic matrix in the sample when tempered at 300 o C. This is in contrast to general case which is the formation of lower ausferritic matrix via austempering at this temperature.
Stress relaxation in tempered glass caused by heat soak testing

DEFF Research Database (Denmark)

Schneider, Jens; Hilcken, Jonas; Aronen, Antti

2016-01-01

Heat soak testing of tempered glass is a thermal process required after the tempering process itself to bring glasses of commercial soda-lime-silica-glass to failure that are contaminated with nickel sulphide inclusions, diameter 50 mm to 500 mm typically. Thus, the tests avoid a so-called "spont...... of commercial soda-lime-silica glass, it causes stress relaxation in tempered glass and the fracture pattern of the glass changes accordingly, especially thin glasses are affected. Based on the Tool-Narayanaswamy-Model, this paper comprises the theoretical background of the stress...
Nitrogen Deposition Effects on Soil Carbon Dynamics in Temperate Forests

DEFF Research Database (Denmark)

Ginzburg Ozeri, Shimon

Soils contain the largest fraction of terrestrial carbon (C). Understanding the factors regulating the decomposition and storage of soil organic matter (SOM) is essential for predictions of the C sink strength of the terrestrial environment in the light of global change. Elevated long-term nitrog...... implications for modelling the carbon sink-strength of temperate forests under global change.......Soils contain the largest fraction of terrestrial carbon (C). Understanding the factors regulating the decomposition and storage of soil organic matter (SOM) is essential for predictions of the C sink strength of the terrestrial environment in the light of global change. Elevated long-term nitrogen...... (N) deposition into forest ecosystems has been increasing globally and was hypothesized to raise soil organic C (SOC) stocks by increasing forest productivity and by reducing SOM decomposition. Yet, these effects of N deposition on forest SOC stocks are uncertain and largely based on observations...
Nonoperative Management of Multiple Penetrating Cardiac and Colon Wounds from a Shotgun: A Case Report and Literature Review

OpenAIRE

Jaramillo, Paula M.; Montoya, Jaime A.; Mejia, David A.; Pereira Warr, Salin

2018-01-01

Introduction. Surgery for cardiac trauma is considered fatal and for wounds of the colon by associated sepsis is normally considered; however, conservative management of many traumatic lesions of different injured organs has progressed over the years. Presentation of the Case. A 65-year-old male patient presented with multiple shotgun wounds on the left upper limb, thorax, and abdomen. On evaluation, he was hemodynamically stable with normal sinus rhythm and normal blood pressure, no dyspnea,...
Baseline and stress-induced levels of corticosterone in male and female Afrotropical and European temperate stonechats during breeding.

Science.gov (United States)

Apfelbeck, Beate; Helm, Barbara; Illera, Juan Carlos; Mortega, Kim G; Smiddy, Patrick; Evans, Neil P

2017-05-22

demanding activities in males and females and reflects investment into reproduction. Low parental workload was associated with lower post-capture (baseline) CORT as expected for a slow pace of life in tropical species. On a finer resolution, however, this tropical-temperate contrast did not generally hold. Post-capture (baseline) CORT was higher during mating stages in particular in tropical males, possibly to support the energetic needs of mate-guarding. Counter to predictions based on life history theory, our data do not confirm the hypothesis that long-lived tropical populations have higher stress-induced CORT concentrations than short-lived temperate populations. Instead, in the predator-rich tropical environments of African stonechats, a dampened stress response during parental stages may increase survival probabilities of young. Overall our data further support an association between life history and baseline CORT, but challenge the role of stress-induced CORT as a mediator of tropical-temperate variation in life history.
Radiation processing of temperate fruits of Kashmir valley

International Nuclear Information System (INIS)

Hussain, Peerzada R.; Meena, Raghuveer S.; Dar, Mohd A.; Wani, Ali M.

2011-01-01

Kashmir valley is famous for its temperate horticulture. Main temperate fruits grown commercially in the valley include apple, pear, peach, plum, cherry, strawberry and apricot. These fruits being perishable and susceptible to microbial spoilage, have a short shelf-life. The short shelf-life in an impediment in their transportation and marketing and results in huge losses. Study was carried out at NRL, Srinagar to investigate the effect of gamma irradiation on the keeping quality of most of these fruits. The effect of gamma irradiation alone and in combination with other techniques like controlled low temperature storage, edible polysaccharide coating and calcium chloride treatment was studied in detail. The results revealed that there is a great potential for the use of radiation in extending the storage life of most of the temperate fruits produced in the valley of Kashmir. (author)
An automatic approach for rice mapping in temperate region using time series of MODIS imagery: first results for Mediterranean environment

Science.gov (United States)

Boschetti, M.; Nelson, A.; Manfrom, G.; Brivio, P. A.

2012-04-01

Timely and accurate information on crop typology and status are required to support suitable action to better manage agriculture production and reduce food insecurity. More specifically, regional crop masking and phenological information are important inputs for spatialized crop growth models for yield forecasting systems. Digital cartographic data available at global/regional scale, such as GLC2000, GLOBCOVER or MODIS land cover products (MOD12), are often not adequate for this crop modeling application. For this reason, there is a need to develop and test methods that can provide such information for specific cropsusing automated classification techniques.. In this framework we focused our analysis on the rice cultivation area detection due to the importance of this crop. Rice is a staple food for half of the world's population (FAO 2004). Over 90% of the world's rice is produced and consumed in Asia and the region is home to 70% of the world's poor, most of whom depend on rice for their livelihoods andor food security. Several initiatives are being promoted at the international level to provide maps of rice cultivated areas in South and South East Asia using different approaches available in literature for rice mapping in tropical regions. We contribute to these efforts by proposing an automatic method to detect rice cultivated areas in temperate regions exploiting MODIS 8-Day composite of Surface Reflectance at 500m spatial resolution (MOD09A1product). Temperate rice is cultivated worldwide in more than 20 countries covering around 16M ha for a total production of about 65M tons of paddy per year. The proposed method is based on a common approach available in literature that first identifies flood condition that can be related to rice agronomic practice and then checks for vegetation growth. The method presents innovative aspects related both to the flood detection, exploiting Short Wave Infrared spectral information, and to the crop grow monitoring analyzing
Light requirements of Australian tropical vs. cool-temperate rainforest tree species show different relationships with seedling growth and functional traits.

Science.gov (United States)

Lusk, Christopher H; Kelly, Jeff W G; Gleason, Sean M

2013-03-01

A trade-off between shade tolerance and growth in high light is thought to underlie the temporal dynamics of humid forests. On the other hand, it has been suggested that tree species sorting on temperature gradients involves a trade-off between growth rate and cold resistance. Little is known about how these two major trade-offs interact. Seedlings of Australian tropical and cool-temperate rainforest trees were grown in glasshouse environments to compare growth versus shade-tolerance trade-offs in these two assemblages. Biomass distribution, photosynthetic capacity and vessel diameters were measured in order to examine the functional correlates of species differences in light requirements and growth rate. Species light requirements were assessed by field estimation of the light compensation point for stem growth. Light-demanding and shade-tolerant tropical species differed markedly in relative growth rates (RGR), but this trend was less evident among temperate species. This pattern was paralleled by biomass distribution data: specific leaf area (SLA) and leaf area ratio (LAR) of tropical species were significantly positively correlated with compensation points, but not those of cool-temperate species. The relatively slow growth and small SLA and LAR of Tasmanian light-demanders were associated with narrow vessels and low potential sapwood conductivity. The conservative xylem traits, small LAR and modest RGR of Tasmanian light-demanders are consistent with selection for resistance to freeze-thaw embolism, at the expense of growth rate. Whereas competition for light favours rapid growth in light-demanding trees native to environments with warm, frost-free growing seasons, frost resistance may be an equally important determinant of the fitness of light-demanders in cool-temperate rainforest, as seedlings establishing in large openings are exposed to sub-zero temperatures that can occur throughout most of the year.
Tempered stable distributions stochastic models for multiscale processes

CERN Document Server

Grabchak, Michael

2015-01-01

This brief is concerned with tempered stable distributions and their associated Levy processes. It is a good text for researchers interested in learning about tempered stable distributions. A tempered stable distribution is one which takes a stable distribution and modifies its tails to make them lighter. The motivation for this class comes from the fact that infinite variance stable distributions appear to provide a good fit to data in a variety of situations, but the extremely heavy tails of these models are not realistic for most real world applications. The idea of using distributions that modify the tails of stable models to make them lighter seems to have originated in the influential paper of Mantegna and Stanley (1994). Since then, these distributions have been extended and generalized in a variety of ways. They have been applied to a wide variety of areas including mathematical finance, biostatistics,computer science, and physics.
Significance of rate of work hardening in tempered martensite embrittlement

International Nuclear Information System (INIS)

Pietikainen, J.

1995-01-01

The main explanations for tempered martensite embrittlement are based on the effects of impurities and cementite precipitation on the prior austenite grain boundaries. There are some studies where the rate of work hardening is proposed as a potential reason for the brittleness. One steel was studied by means of a specially developed precision torsional testing device. The test steel had a high Si and Ni content so ε carbide and Fe 3 C appear in quite different tempering temperature ranges. The M S temperature is low enough so that self tempering does not occur. With the testing device it was possible to obtain the true stress - true strain curves to very high deformations. The minimum toughness was always associated with the minimum of rate of work hardening. The change of deformed steel volume before the loss of mechanical stability is proposed as at least one reason for tempered martensite embrittlement. The reasons for the minimum of the rate of work hardening are considered. (orig.)
Pigs in sequence space: A 0.66X coverage pig genome survey based on shotgun sequencing

Directory of Open Access Journals (Sweden)

Li Wei

2005-05-01

Full Text Available Abstract Background Comparative whole genome analysis of Mammalia can benefit from the addition of more species. The pig is an obvious choice due to its economic and medical importance as well as its evolutionary position in the artiodactyls. Results We have generated ~3.84 million shotgun sequences (0.66X coverage from the pig genome. The data are hereby released (NCBI Trace repository with center name "SDJVP", and project name "Sino-Danish Pig Genome Project" together with an initial evolutionary analysis. The non-repetitive fraction of the sequences was aligned to the UCSC human-mouse alignment and the resulting three-species alignments were annotated using the human genome annotation. Ultra-conserved elements and miRNAs were identified. The results show that for each of these types of orthologous data, pig is much closer to human than mouse is. Purifying selection has been more efficient in pig compared to human, but not as efficient as in mouse, and pig seems to have an isochore structure most similar to the structure in human. Conclusion The addition of the pig to the set of species sequenced at low coverage adds to the understanding of selective pressures that have acted on the human genome by bisecting the evolutionary branch between human and mouse with the mouse branch being approximately 3 times as long as the human branch. Additionally, the joint alignment of the shot-gun sequences to the human-mouse alignment offers the investigator a rapid way to defining specific regions for analysis and resequencing.
DETERMINATION OF THE OPTIMAL TEMPERING TEMPERATURE IN HARD FACING OF THE FORGING DIES

Directory of Open Access Journals (Sweden)

Milan Mutavdžić

2012-06-01

Full Text Available Here is analyzed selection of the optimal technology for heat treatment during the reparation of the damaged forging dies. Those tools are manufactured from alloyed tool steels for operation at elevated temperatures. Those steels are prone to self-hardening, so in reparatory hard-facing they must be preheated, additionally heated and tempered. During the tempering, in temperature interval 500-600°C, a secondary increase of hardness and decrease of impact toughness occurs, the so-called reversible tempering brittleness. Here is shown that it can be avoided by application of metallurgical and technological measures. Metallurgical measures assume adequate selection of steels. Since the considered steels are per se prone to tempering brittleness, we conducted experimental investigations to define the technological measures to avoid it. Tests on models were conducted: tempering from different temperatures, slow heating and cooling in still air. Hardness measurements showed that at 520°C, the secondary increase of hardness occurs, with drop of the impact toughness. Additional hard-facing tests included samples tempered at various regimes. Samples were prepared for mechanical and metallographic investigations. Results presented illustrate influence of additional heat treatment on structure, hardness and mechanical properties of the hard-faced layers. This enabled establishing the possibility of avoiding the tempering brittleness through technological measures.
Determination of the optimal tempering temperature in hard facing of the forging dies

Directory of Open Access Journals (Sweden)

Milan Mutavdžić

2012-05-01

Full Text Available Here is analyzed selection of the optimal technology for heat treatment during the reparation of the damaged forging dies. Those tools are manufactured from alloyed tool steels for operation at elevated temperatures. Those steels are prone to self-hardening, so in reparatory hard-facing they must be preheated, additionally heated and tempered. During the tempering, in temperature interval 500-600°C, a secondary increase of hardness and decrease of impact toughness occurs, the so-called reversible tempering brittleness. Here is shown that it can be avoided by application of metallurgical and technological measures. Metallurgical measures assume adequate selection of steels. Since the considered steels are per se prone to tempering brittleness, we conducted experimental investigations to define the technological measures to avoid it. Tests on models were conducted: tempering from different temperatures, slow heating and cooling in still air. Hardness measurements showed that at 520°C, the secondary increase of hardness occurs, with drop of the impact toughness. Additional hard-facing tests included samples tempered at various regimes. Samples were prepared for mechanical and metallographic investigations. Results presented illustrate influence of additional heat treatment on structure, hardness and mechanical properties of the hard-faced layers. This enabled establishing the possibility of avoiding the tempering brittleness through technological measures.
Adaptive root foraging strategies along a boreal-temperate forest gradient.

Science.gov (United States)

Ostonen, Ivika; Truu, Marika; Helmisaari, Heljä-Sisko; Lukac, Martin; Borken, Werner; Vanguelova, Elena; Godbold, Douglas L; Lõhmus, Krista; Zang, Ulrich; Tedersoo, Leho; Preem, Jens-Konrad; Rosenvald, Katrin; Aosaar, Jürgen; Armolaitis, Kęstutis; Frey, Jane; Kabral, Naima; Kukumägi, Mai; Leppälammi-Kujansuu, Jaana; Lindroos, Antti-Jussi; Merilä, Päivi; Napa, Ülle; Nöjd, Pekka; Parts, Kaarin; Uri, Veiko; Varik, Mats; Truu, Jaak

2017-08-01

The tree root-mycorhizosphere plays a key role in resource uptake, but also in the adaptation of forests to changing environments. The adaptive foraging mechanisms of ectomycorrhizal (EcM) and fine roots of Picea abies, Pinus sylvestris and Betula pendula were evaluated along a gradient from temperate to subarctic boreal forest (38 sites between latitudes 48°N and 69°N) in Europe. Variables describing tree resource uptake structures and processes (absorptive fine root biomass and morphology, nitrogen (N) concentration in absorptive roots, extramatrical mycelium (EMM) biomass, community structure of root-associated EcM fungi, soil and rhizosphere bacteria) were used to analyse relationships between root system functional traits and climate, soil and stand characteristics. Absorptive fine root biomass per stand basal area increased significantly from temperate to boreal forests, coinciding with longer and thinner root tips with higher tissue density, smaller EMM biomass per root length and a shift in soil microbial community structure. The soil carbon (C) : N ratio was found to explain most of the variability in absorptive fine root and EMM biomass, root tissue density, N concentration and rhizosphere bacterial community structure. We suggest a concept of absorptive fine root foraging strategies involving both qualitative and quantitative changes in the root-mycorrhiza-bacteria continuum along climate and soil C : N gradients. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.
Source-pathway-receptor investigation of the fate of trace elements derived from shotgun pellets discharged in terrestrial ecosystems managed for game shooting

International Nuclear Information System (INIS)

Sneddon, Jennifer; Clemente, Rafael; Riby, Philip; Lepp, Nicholas W.

2009-01-01

Spent shotgun pellets may contaminate terrestrial ecosystems. We examined the fate of elements originating from shotgun pellets in pasture and woodland ecosystems. Two source-receptor pathways: i) soil-soil pore water-plant and ii) whole earthworm/worm gut contents - washed and unwashed small mammal hair were investigated. Concentrations of Pb and associated contaminants were higher in soils from shot areas than controls. Arsenic and lead concentrations were positively correlated in soils, soil pore water and associated biota. Element concentrations in biota were below statutory levels in all locations. Bioavailability of lead to small mammals, based on concentrations in washed body hair was low. Lead movement from soil water to higher trophic levels was minor compared to lead adsorbed onto body surfaces. Lead was concentrated in earthworm gut and some plants. Results indicate that managed game shooting presents minimal risk in terms of element transfer to soils and their associated biota. - Source-receptor pathway analysis of a managed game shooting site showed no environmental risk of trace element transfer.

Source-pathway-receptor investigation of the fate of trace elements derived from shotgun pellets discharged in terrestrial ecosystems managed for game shooting

Energy Technology Data Exchange (ETDEWEB)

Sneddon, Jennifer [School of Natural Sciences and Psychology, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF (United Kingdom); Clemente, Rafael, E-mail: rclemente@cebas.csic.e [School of Natural Sciences and Psychology, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF (United Kingdom); Riby, Philip [School of Pharmacy and Chemistry, Liverpool John Moores University, Liverpool L3 3AF (United Kingdom); Lepp, Nicholas W., E-mail: n.w.lepp@ljmu.ac.u [School of Natural Sciences and Psychology, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF (United Kingdom)

2009-10-15

Spent shotgun pellets may contaminate terrestrial ecosystems. We examined the fate of elements originating from shotgun pellets in pasture and woodland ecosystems. Two source-receptor pathways: i) soil-soil pore water-plant and ii) whole earthworm/worm gut contents - washed and unwashed small mammal hair were investigated. Concentrations of Pb and associated contaminants were higher in soils from shot areas than controls. Arsenic and lead concentrations were positively correlated in soils, soil pore water and associated biota. Element concentrations in biota were below statutory levels in all locations. Bioavailability of lead to small mammals, based on concentrations in washed body hair was low. Lead movement from soil water to higher trophic levels was minor compared to lead adsorbed onto body surfaces. Lead was concentrated in earthworm gut and some plants. Results indicate that managed game shooting presents minimal risk in terms of element transfer to soils and their associated biota. - Source-receptor pathway analysis of a managed game shooting site showed no environmental risk of trace element transfer.
Biophysical processes leading to the ingress of temperate fish larvae into estuarine nursery areas: A review

Science.gov (United States)

Teodósio, Maria Alexandra; Paris, Claire B.; Wolanski, Eric; Morais, Pedro

2016-12-01

A series of complementary hypotheses have been proposed to explain the recruitment of marine and temperate pelagic fish larvae originated from pelagic eggs in coastal environments. In this review, we propose a new and complementary hypothesis describing the biophysical processes intervening in the recruitment of temperate fish larvae into estuaries. This new hypothesis, the Sense Acuity And Behavioral (SAAB) hypothesis, recognizes that recruitment is unlikely if the larvae drift passively with the water currents, and that successful recruitment requires the sense acuity of temperate fish larvae and their behavioral response to the estuarine cues present in coastal areas. We propose that temperate fish larvae use a hierarchy of sensory cues (odor, sound, visual and geomagnetic cues) to detect estuarine nursery areas and to aid during navigation towards these areas. The sensorial acuity increases along ontogeny, which coincides with increased swimming capabilities. The swimming strategies of post-flexion larvae differ from offshore areas to the tidal zone. In offshore areas, innate behavior might lead larvae towards the coast guided by a sun compass or by the earth's geomagnetic field. In areas under limited influence of estuarine plumes (either in energetic nearshore areas or offshore), post-flexion larvae display a searching swimming behavior for estuarine disconnected patches (infotaxis strategy). After finding an estuarine plume, larvae may swim along the increasing cue concentration to ingress into the estuary. Here, larvae exhibit a rheotaxis behavior and avoid displacement by longshore currents by keeping bearing during navigation. When larvae reach the vicinity of an estuary, merging diel rhythms with feeding and predator avoidance strategies with tidally induced movements is essential to increase their chances of estuarine ingress. A fish larva recruitment model developed for the Ria Formosa lagoon supports the general framework of the SAAB hypothesis. In
Comparative assessment of single and joint effects of diuron and Irgarol 1051 on Arctic and temperate microalgae using chlorophyll a fluorescence imaging

KAUST Repository

Kottuparambil, Sreejith

2017-02-06

Ship groundings and ice-breakers can cause pollution of the polar environment with antifouling biocides such as diuron and Irgarol 1051. The present study used pulse amplitude modulated fluorometry to compare single and joint toxicities of diuron and Irgarol 1051 on two freshwater taxa of microalgae (Chlorella and Chlamydomonas) originating from Arctic and temperate regions. 30min acute toxicity tests using chlorophyll a (Chl a) fluorescence revealed that Arctic strains of microalgae were more sensitive to herbicides than their temperate counterparts. Diuron and Irgarol 1051 had equal toxicities in the Arctic species, while Irgarol 1051 was more toxic (EC50=5.55–14.70μgL−1) than diuron (EC50=12.90–>40μgL−1) in the temperate species. Toxicity assessment of various mixtures of diuron and Irgarol 1051 revealed antagonistic, additive, and synergistic effects. Our data suggest that herbicides can adversely affect photosynthesis in Arctic microalgae at relatively low levels, and their impact can increase under complex mixture conditions.
Comparative assessment of single and joint effects of diuron and Irgarol 1051 on Arctic and temperate microalgae using chlorophyll a fluorescence imaging

KAUST Repository

Kottuparambil, Sreejith; Brown, Murray T.; Park, Jihae; Choi, Soyeon; Lee, Hojun; Choi, Han-Gu; Depuydt, Stephen; Han, Taejun

2017-01-01

Ship groundings and ice-breakers can cause pollution of the polar environment with antifouling biocides such as diuron and Irgarol 1051. The present study used pulse amplitude modulated fluorometry to compare single and joint toxicities of diuron and Irgarol 1051 on two freshwater taxa of microalgae (Chlorella and Chlamydomonas) originating from Arctic and temperate regions. 30min acute toxicity tests using chlorophyll a (Chl a) fluorescence revealed that Arctic strains of microalgae were more sensitive to herbicides than their temperate counterparts. Diuron and Irgarol 1051 had equal toxicities in the Arctic species, while Irgarol 1051 was more toxic (EC50=5.55–14.70μgL−1) than diuron (EC50=12.90–>40μgL−1) in the temperate species. Toxicity assessment of various mixtures of diuron and Irgarol 1051 revealed antagonistic, additive, and synergistic effects. Our data suggest that herbicides can adversely affect photosynthesis in Arctic microalgae at relatively low levels, and their impact can increase under complex mixture conditions.
On the tempered martensite embrittlement in AISI 4140 low alloy steel

Energy Technology Data Exchange (ETDEWEB)

Darwish, F.A. (Dept. of Materials Science and Metallurgy, Catholic Univ., Rio de Janeiro, RJ (Brazil)); Pereira, L.C.; Gatts, C. (Dept. of Metallurgy and Materials Engineering, Federal Univ., Rio de Janeiro, RJ (Brazil)); Graca, M.L. (Materials Div., Technical Aerospace Center, Sao Jose dos Campos, SP (Brazil))

1991-02-01

In the present investigation the Auger electron spectroscopy (AES) technique was used to determine local carbon and phosphorus concentrations on the fracture surfaces of as-quenched and quenched-and-tempered (at 350deg C) AISI 4140 steel specimens austenitized at low and high temperatures. The AES results were rationalized to conclude that, although carbide growth as well as phosphorus segregation are expected to contribute to tempered martensite embrittlement, carbide precipitation on prior austenite grain boundaries during tempering is seen to be the microstructural change directly responsible for the occurrence of the referred embrittlement phenomenon. (orig.).
An investigation on high temperature fatigue properties of tempered nuclear-grade deposited weld metals

Science.gov (United States)

Cao, X. Y.; Zhu, P.; Yong, Q.; Liu, T. G.; Lu, Y. H.; Zhao, J. C.; Jiang, Y.; Shoji, T.

2018-02-01

Effect of tempering on low cycle fatigue (LCF) behaviors of nuclear-grade deposited weld metal was investigated, and The LCF tests were performed at 350 °C with strain amplitudes ranging from 0.2% to 0.6%. The results showed that at a low strain amplitude, deposited weld metal tempered for 1 h had a high fatigue resistance due to high yield strength, while at a high strain amplitude, the one tempered for 24 h had a superior fatigue resistance due to high ductility. Deposited weld metal tempered for 1 h exhibited cyclic hardening at the tested strain amplitudes. Deposited weld metal tempered for 24 h exhibited cyclic hardening at a low strain amplitude but cyclic softening at a high strain amplitude. Existence and decomposition of martensite-austenite (M-A) islands as well as dislocations activities contributed to fatigue property discrepancy among the two tempered deposited weld metal.
Analysis of secretome of breast cancer cell line with an optimized semi-shotgun method

International Nuclear Information System (INIS)

Tang Xiaorong; Yao Ling; Chen Keying; Hu Xiaofang; Xu Lisa; Fan Chunhai

2009-01-01

Secretome, the totality of secreted proteins, is viewed as a promising pool of candidate cancer biomarkers. Simple and reliable methods for identifying secreted proteins are highly desired. We used an optimized semi-shotgun liquid chromatography followed by tandem mass spectrometry (LC-MS/MS) method to analyze the secretome of breast cancer cell line MDA-MB-231. A total of 464 proteins were identified. About 63% of the proteins were classified as secreted proteins, including many promising breast cancer biomarkers, which were thought to be correlated with tumorigenesis, tumor development and metastasis. These results suggest that the optimized method may be a powerful strategy for cell line secretome profiling, and can be used to find potential cancer biomarkers with great clinical significance. (authors)
Seasonality of temperate forest photosynthesis and daytime respiration.

Science.gov (United States)

Wehr, R; Munger, J W; McManus, J B; Nelson, D D; Zahniser, M S; Davidson, E A; Wofsy, S C; Saleska, S R

2016-06-30

Terrestrial ecosystems currently offset one-quarter of anthropogenic carbon dioxide (CO2) emissions because of a slight imbalance between global terrestrial photosynthesis and respiration. Understanding what controls these two biological fluxes is therefore crucial to predicting climate change. Yet there is no way of directly measuring the photosynthesis or daytime respiration of a whole ecosystem of interacting organisms; instead, these fluxes are generally inferred from measurements of net ecosystem-atmosphere CO2 exchange (NEE), in a way that is based on assumed ecosystem-scale responses to the environment. The consequent view of temperate deciduous forests (an important CO2 sink) is that, first, ecosystem respiration is greater during the day than at night; and second, ecosystem photosynthetic light-use efficiency peaks after leaf expansion in spring and then declines, presumably because of leaf ageing or water stress. This view has underlain the development of terrestrial biosphere models used in climate prediction and of remote sensing indices of global biosphere productivity. Here, we use new isotopic instrumentation to determine ecosystem photosynthesis and daytime respiration in a temperate deciduous forest over a three-year period. We find that ecosystem respiration is lower during the day than at night-the first robust evidence of the inhibition of leaf respiration by light at the ecosystem scale. Because they do not capture this effect, standard approaches overestimate ecosystem photosynthesis and daytime respiration in the first half of the growing season at our site, and inaccurately portray ecosystem photosynthetic light-use efficiency. These findings revise our understanding of forest-atmosphere carbon exchange, and provide a basis for investigating how leaf-level physiological dynamics manifest at the canopy scale in other ecosystems.
Oceanic temperate forest versus warm temperate rainforest: a reply to Grubb et al. (2017)

DEFF Research Database (Denmark)

McGlone, Matt S.; Buitenwerf, Robert; Richardson, Sarah J.

2017-01-01

Grubb et al. (2017) point out that we (McGlone et al. 2016) erroneously stated that the definition of warm temperate rain forest (WTRF; Grubb et al. 2013) was based in part on climatic criteria. We apologise: their text made clear that this was not the case. However, they go on to say that they ‘...
Influence of Mo addition on the tempered properties of 13Cr martensitic stainless steel

International Nuclear Information System (INIS)

Jung, Byong Ho; Ahn, Yong Sik

1998-01-01

In order to investigate the effect of Mo addition on the mechanical properties of 13Cr-0.2C martensitic stainless steel, tensile test and Charpy V-notch test were performed after tempering at the temperature range of 200∼700 .deg. C following austenitizing at 1100 .deg. C. The yield strength and hardness of the steel were increased with the increase of Mo content at all tempering conditions, because Mo causes retardation of precipitation and coarsening of carbides and solid solution strengthening of matrix. Except 500 .deg. C of tempering temperature, the Charpy impact energy was significantly increased with Mo content and showed the highest value at 1.5 wt% addition. The increase of impact energy of the steel containing Mo is thought to be caused by δ-ferrite formed in the tempered martensitic matrix. At 500 .deg. C tempering, Charpy impact energy was decreased drastically due to temper embrittlement and it was not possible to prevent it even though Mo was added up to 1.5 wt%
Spent nuclear fuel project cold vacuum drying facility tempered water and tempered water cooling system design description

International Nuclear Information System (INIS)

IRWIN, J.J.

1998-01-01

This document provides the System Design Description (SDD) for the Cold Vacuum Drying Facility (CVDF) Tempered Water (TW) and Tempered Water Cooling (TWC) System . The SDD was developed in conjunction with HNF-SD-SNF-SAR-002, Safety Analysis Report for the Cold Vacuum Drying Facility, Phase 2, Supporting Installation of Processing Systems (Garvin 1998), The HNF-SD-SNF-DRD-O02, 1998, Cold Vacuum Drying Facility Design Requirements, and the CVDF Design Summary Report. The SDD contains general descriptions of the TW and TWC equipment, the system functions, requirements and interfaces. The SDD provides references for design and fabrication details, operation sequences and maintenance. This SOD has been developed for the SNFP Operations Organization and shall be updated, expanded, and revised in accordance with future design, construction and startup phases of the CVDF until the CVDF final ORR is approved
Ultra low carbon bainitic (ULCB) steels after quenching and tempering

International Nuclear Information System (INIS)

Lis, A.K.; Lis, J.; Kolan, C.; Jeziorski, L.

1998-01-01

The mechanical and Charpy V impact strength properties of new advanced ultra low carbon bainitic (ULBC) steels after water quenching and tempering (WQT) have been investigated. Their chemical compositions are given. The nine continuous cooling transformation diagrams (CCT) of the new ULCB steel grades have been established. The CCT diagrams for ULCB N i steels containing 9% Ni - grade 10N9 and 5% Ni - grade HN5MVNb are given. The comparison between CCT diagrams of 3.5%Ni + 1.5%Cu containing steels grade HSLA 100 and HN3MCu is shown. The effect of the increase in carbon and titanium contents in the chemical composition of ULCB M n steels 04G3Ti, 06G3Ti and 09G3Ti on the kinetics of phase transformations during continuous cooling is presented by the shifting CCT diagrams. The Charpy V impact strength and brittle fracture occurence curves are shown. The effect of tempering temperature on tensile properties of WQT HN3MCu steel is shown and Charpy V impact strength curves after different tempering conditions are shown. The optimum tempering temperatures region of HN3MCu steel for high Charpy V impact toughness at law temperatures - 80 o C(193 K) and -120 o C(153 K) is estimated. The effect of tempering temperature on mechanical properties of HN5MVNb steel is given. The low temperature impact Charpy V toughness of HN5MVNb steel is shown. The optimum range of tempering temperature during 1 hour for high toughness of WQT HN5MVNb steel is given. HN3MCu and HN5MVNb steels after WQT have high yield strength YS≥690 MPa and high Charpy V impact toughness KV≥80 J at -100 o C (173K) and KCV≥50 J/cm 2 at - 120 o C (153K) so they may be used for cryogenic applications
Hot wire TIG temper bead welding for nuclear repairs

International Nuclear Information System (INIS)

Lambert, J.A.; Gilston, P.F.

1989-08-01

A preliminary assessment has been carried out to determine the suitability of the hot wire tungsten inert gas (TIG) welding process for the repair of thick section, ferritic steel nuclear pressure vessels. The objective has been to identify a hot wire TIG temper bead procedure, suitable for repairs without post weld heat treatment. This procedure involves depositing two weld layers with carefully selected welding parameters such that overlapping thermal cycles produce a refined and tempered heat affected zone, HAZ, microstructure. (author)
Effect of tempering on the microstructure and mechanical properties of a medium carbon bainitic steel

Energy Technology Data Exchange (ETDEWEB)

Kang, J. [State Key Laboratory of Metastable Materials Science and Technology, Yanshan University, Qinhuangdao 066004 (China); Zhang, F.C., E-mail: zfc@ysu.edu.cn [State Key Laboratory of Metastable Materials Science and Technology, Yanshan University, Qinhuangdao 066004 (China); National Engineering Research Center for Equipment and Technology of Cold Strip Rolling, Yanshan University, Qinhuangdao 066004 (China); Yang, X.W. [State Key Laboratory of Metastable Materials Science and Technology, Yanshan University, Qinhuangdao 066004 (China); Lv, B. [College of Environmental and Chemical Engineering, Yanshan University, Qinhuangdao 066004 (China); Wu, K.M. [International Research Institute for Steel Technology, Wuhan University of Science and Technology, Wuhan 430081 (China); Materials Science and Metallurgy, University of Cambridge, Cambridge CB2 3QZ (United Kingdom)

2017-02-16

The effect of tempering on the microstructure and mechanical properties of a medium carbon bainitic steel has been investigated through optical microscopy, electron back-scattered diffraction, transmission electron microscopy and X-ray diffraction analyses. A nano-level microstructure containing plate-like bainitic ferrite and film-like retained austenite is obtained by isothermal transformation at Ms+10 °C followed by tempering within 240–450 °C. Results show that the sample tempered at 340 °C occupies the optimal balance of strength and toughness by maintaining a certain level of plasticity; samples tempered at 320 °C and 360 °C with low and high yield ratio come second. The microstructure of the steel is not sensitive to tempering temperatures before 360 °C. When the temperature is increased to 450 °C, the significantly coarsened bainitic ferrite plate and the occurrence of a small quantity of carbide precipitation account for its low toughness. The amount of retained austenite increases with the tempering temperature before 400 °C, followed by decreasing with further increase in the temperature. This behavior is related to the competition between retained austenite further transforming into bainite and decomposing into carbide during tempering.
Study of the effects of austenitizing and tempering heat treatments on the alloy HT-9

International Nuclear Information System (INIS)

Redmon, J.W.

1982-01-01

This paper investigates the potential use of the ferritic alloy Sandvik HT-9 (12 Cr - 1 Mo) as an alternative to stainless steels used in high-neutron-fluence environments. The neutron radiation influences embrittlement where the impact-energy versus test-temperature curve is seen displaced to the right. As a result, commercially effective solutioning and tempering processes are needed to suppress this effect in the pre-irradiated condition. The effects of austenitizing treatments on the impact energy of HT-9 were identified. 18 figures, 6 tables
The tropicalization of temperate marine ecosystems: climate-mediated changes in herbivory and community phase shifts

Science.gov (United States)

Vergés, Adriana; Steinberg, Peter D.; Hay, Mark E.; Poore, Alistair G. B.; Campbell, Alexandra H.; Ballesteros, Enric; Heck, Kenneth L.; Booth, David J.; Coleman, Melinda A.; Feary, David A.; Figueira, Will; Langlois, Tim; Marzinelli, Ezequiel M.; Mizerek, Toni; Mumby, Peter J.; Nakamura, Yohei; Roughan, Moninya; van Sebille, Erik; Gupta, Alex Sen; Smale, Dan A.; Tomas, Fiona; Wernberg, Thomas; Wilson, Shaun K.

2014-01-01

Climate-driven changes in biotic interactions can profoundly alter ecological communities, particularly when they impact foundation species. In marine systems, changes in herbivory and the consequent loss of dominant habitat forming species can result in dramatic community phase shifts, such as from coral to macroalgal dominance when tropical fish herbivory decreases, and from algal forests to ‘barrens’ when temperate urchin grazing increases. Here, we propose a novel phase-shift away from macroalgal dominance caused by tropical herbivores extending their range into temperate regions. We argue that this phase shift is facilitated by poleward-flowing boundary currents that are creating ocean warming hotspots around the globe, enabling the range expansion of tropical species and increasing their grazing rates in temperate areas. Overgrazing of temperate macroalgae by tropical herbivorous fishes has already occurred in Japan and the Mediterranean. Emerging evidence suggests similar phenomena are occurring in other temperate regions, with increasing occurrence of tropical fishes on temperate reefs. PMID:25009065
Strain-tempering of low carbon martensite steel wire by rapid heating

International Nuclear Information System (INIS)

Torisaka, Yasunori; Kihara, Junji

1978-01-01

In the production of prestressed concrete steel wires, a series of the cold drawing-patenting process are performed to improve the strength. In order to reduce cyclic process, the low carbon martensite steel wire which can be produced only by the process of hot rolling and direct quench has been investigated as strain-tempering material. When strain-tempering is performed on the low carbon martensite steel wire, stress relaxation (Re%) increases and mechanical properties such as total elongation, reduction of area, ultimate tensile strength and proof stress decrease remarkably by annealing. In order to shorten the heating time, the authors performed on the steel wire the strain-tempering with a heating time of 1.0 s using direct electrical resistance heating and examined the effects of rapid heating on the stress relaxation and the mechanical properties. Stress relaxation decreases without impairment of the mechanical properties up to a strain-tempering temperature of 573 K. Re(%) after 10.8 ks is 0% at the testing temperature 301 K, 0.49% at 363 K and 1.39% at 433 K. (auth.)
Vibrio vulnificus phage PV94 is closely related to temperate phages of V. cholerae and other Vibrio species.

Directory of Open Access Journals (Sweden)

Mark Pryshliak

Full Text Available BACKGROUND: Vibrio vulnificus is an important pathogen which can cause serious infections in humans. Yet, there is limited knowledge on its virulence factors and the question whether temperate phages might be involved in pathogenicity, as is the case with V. cholerae. Thus far, only two phages (SSP002 and VvAW1 infecting V. vulnificus have been genetically characterized. These phages were isolated from the environment and are not related to Vibrio cholerae phages. The lack of information on temperate V. vulnificus phages prompted us to isolate those phages from lysogenic strains and to compare them with phages of other Vibrio species. RESULTS: In this study the temperate phage PV94 was isolated from a V. vulnificus biotype 1 strain by mitomycin C induction. PV94 is a myovirus whose genome is a linear double-stranded DNA of 33,828 bp with 5'-protruding ends. Sequence analysis of PV94 revealed a modular organization of the genome. The left half of the genome comprising the immunity region and genes for the integrase, terminase and replication proteins shows similarites to V. cholerae kappa phages whereas the right half containing genes for structural proteins is closely related to a prophage residing in V. furnissii NCTC 11218. CONCLUSION: We present the first genomic sequence of a temperate phage isolated from a human V. vulnificus isolate. The sequence analysis of the PV94 genome demonstrates the wide distribution of closely related prophages in various Vibrio species. Moreover, the mosaicism of the PV94 genome indicates a high degree of horizontal genetic exchange within the genus Vibrio, by which V. vulnificus might acquire virulence-associated genes from other species.
Resistance to small plastic strains during martensite tempering under tension

Energy Technology Data Exchange (ETDEWEB)

Zabil' skij, V.V.; Sarrak, V.I. (AN SSSR, Sverdlovsk. Inst. Fiziki Metallov)

1982-11-01

The mechanism of plastic deformation of martensite of a series of hardened steels (N18, 20KhG, 50KhFA and others) during tempering under tension and the role of residual internal microstresses and phase transformations are studied. It is shown that martensite low resistance to small plastic deformations during tempering under tension which is usually associated with phase transformations depends as well on the level of residual internal microstresses in the martensite structure. The decrease of resistance to deformation in the course of the decomposition of a solid solution is due to weakening of martensitic matrix because of carbon departure from the solid solution and carbide coarsening. An assumption is made that martensite plastic deformation during tempering under tension is realized at the expense of the directed microplastic deformation in the regions of higher concentration of internal stresses.
Remaining stress-state and strain-energy in tempered glass fragments

DEFF Research Database (Denmark)

Nielsen, Jens Henrik

2016-01-01

to the fragmentation process and some authors e.g. Barsom (J Am Ceram Soc 51(2):75, 1968), Gulati (Glass processing days, Tamglass Engineering Oy, Tampere, 1997), Warren (Fractography of glasses and ceramics IV, Alfred University, Alfred, 2001) and Tandon and Glass (Fracture mechanics of ceramics—active materials......When tempered glass breaks, it shatters into relatively small pieces depending on the residual stress state in the glass. This has been known for centuries and is currently used in standards for classifying whether a piece of glass is tempered or not. However, the process of fragmentation...... is complex and only a few, relatively simple, models have been suggested for predicting the fragment size. The full theoretical explanation is still to be found and this work aims at providing another brick to the puzzle. The strain-energy present in tempered glass is obviously contributing...

Immune indexes of larks from desert and temperate regions show weak associations with life history but stronger links to environmental variation in microbial abundance

NARCIS (Netherlands)

Horrocks, N.P.C.; Hegemann, A.; Matson, K.D.; Hine, K.; Jaquier, S.; Shobrak, M.; Williams, J.B.; Tinbergen, J.M.; Tieleman, B.I.

2012-01-01

Immune defense may vary as a result of trade-offs with other life-history traits or in parallel with variation in antigen levels in the environment. We studied lark species (Alaudidae) in the Arabian Desert and temperate Netherlands to test opposing predictions from these two hypotheses. Based on
Immune Indexes of Larks from Desert and Temperate Regions Show Weak Associations with Life History but Stronger Links to Environmental Variation in Microbial Abundance

NARCIS (Netherlands)

Horrocks, Nicholas P. C.; Hegemann, Arne; Matson, Kevin D.; Hine, Kathryn; Jaquier, Sophie; Shobrak, Mohammed; Williams, Joseph B.; Tinbergen, Joost M.; Tieleman, B. Irene

2012-01-01

Immune defense may vary as a result of trade-offs with other life-history traits or in parallel with variation in antigen levels in the environment. We studied lark species (Alaudidae) in the Arabian Desert and temperate Netherlands to test opposing predictions from these two hypotheses. Based on
Rumen pH and NH3-N concentration of sheep fed temperate ...

African Journals Online (AJOL)

The aim of this study was to evaluate the effect of sorghum grain supplementation on ruminal pH and NH. 3-N concentration of wethers consuming a fresh temperate pasture (Lotus corniculatus) in metabolism cages. Sixteen Corriedale x Milchschaf wethers were fed temperate pastures ad libitum and were ...
Effect of tempering on microstructure and tensile properties of niobium modified martensitic 9Cr heat resistant steel

Energy Technology Data Exchange (ETDEWEB)

Mandal, A., E-mail: anupmetal@gmail.com; Bandyopadhay, T.K.

2015-01-03

The effect of tempering on the microstructure of niobium modified 8.8 wt% chromium steel has been evaluated. Steel has been prepared using the conventional melting and casting route. Homogenization and forging is done at 1100 °C. Dilatometric study shows that the Ac{sub 1}, Ac{sub 3} and M{sub s} temperatures are 800, 855, and 131 °C, respectively. Initial cast and forged microstructures consist of martensite/ferrite. The samples are subsequently tempered at 500–800 °C for various intervals of time (1–5 h). The microstructure of the tempered sample is analyzed using optical microscopy, scanning electron microscopy, and X-ray diffraction. High Resolution Transmission Electron Microscopy (HRTEM) is used to identify the precipitate. Nanometer-sized precipitates (50–200 nm) are observed after tempering at 700 °C for 1 h. Niobium rich MC type carbide precipitates and chromium rich M{sub 23}C{sub 6} type precipitates are observed after tempering at 700 °C. Tensile strength decreases with increasing tempering temperature. Maximum tensile strength of 920 MPa is observed after tempering at 700 °C and maximum elongation of ∼11% is observed after tempering at 750 °C.
Shotgun proteomic analytical approach for studying proteins adsorbed onto liposome surface

KAUST Repository

Capriotti, Anna Laura

2011-07-02

The knowledge about the interaction between plasma proteins and nanocarriers employed for in vivo delivery is fundamental to understand their biodistribution. Protein adsorption onto nanoparticle surface (protein corona) is strongly affected by vector surface characteristics. In general, the primary interaction is thought to be electrostatic, thus surface charge of carrier is supposed to play a central role in protein adsorption. Because protein corona composition can be critical in modifying the interactive surface that is recognized by cells, characterizing its formation onto lipid particles may serve as a fundamental predictive model for the in vivo efficiency of a lipidic vector. In the present work, protein coronas adsorbed onto three differently charged cationic liposome formulations were compared by a shotgun proteomic approach based on nano-liquid chromatography-high-resolution mass spectrometry. About 130 proteins were identified in each corona, with only small differences between the different cationic liposome formulations. However, this study could be useful for the future controlled design of colloidal drug carriers and possibly in the controlled creation of biocompatible surfaces of other devices that come into contact with proteins into body fluids. © 2011 Springer-Verlag.
24-h Fluid Kinetics and Perception of Sweat Losses Following a 1-h Run in a Temperate Environment

Directory of Open Access Journals (Sweden)

Eric K. O'Neal

2013-12-01

Full Text Available This study examined 24-h post-run hydration status and sweat loss estimation accuracy in college age runners (men = 12, women = 8 after completing a 1-h self-paced outdoor run (wet bulb globe temperature = 19.9 ± 3.0 °C. Sweat losses (1353 ± 422 mL; 1.9% ± 0.5% of body mass were significantly greater (p < 0.001 than perceived losses (686 ± 586 mL. Cumulative fluid consumption equaled 3876 ± 1133 mL (218 ± 178 mL during with 37% of fluid ingested lost through urine voids (1450 ± 678 mL. Fluid balance based on intake and urine production equaled +554 ± 669 mL at 12 h and +1186 ± 735 mL at 24 h. Most runners reported euhydrated (pre-run urine specific gravity (USG = 1.018 ± 0.008 with no changes (p = 0.33 at hours 12 or 24 when both genders were included. However, USG was higher (p = 0.004 at 12 h post-run for men (1.025 ± 0.0070 vs. 1.014 ± 0.007, who consumed 171% ± 40% of sweat losses at 12 h vs. 268% ± 88% for women. Most runners do not need intervention concerning between bout hydration needs in temperate environments. However, repeated USG measurements were able to identify runners who greatly under or over consumed fluid during recovery. Practitioners can use multiple USG assessments as cheap method to detect runners who need to modify their hydration strategies and should promote assessment of sweat losses by change in body mass, as runners had poor perception of sweat losses.
Reference of Temperature and Time during tempering process for non-stoichiometric FTO films

Science.gov (United States)

Yang, J. K.; Liang, B.; Zhao, M. J.; Gao, Y.; Zhang, F. C.; Zhao, H. L.

2015-10-01

In order to enhance the mechanical strength of Low-E glass, Fluorine-doped tin oxide (FTO) films have to be tempered at high temperatures together with glass substrates. The effects of tempering temperature (600 °C ~ 720 °C) and time (150 s ~ 300 s) on the structural and electrical properties of FTO films were investigated. The results show all the films consist of non-stoichiometric, polycrystalline SnO2 without detectable amounts of fluoride. 700 °C and 260 s may be the critical tempering temperature and time, respectively. FTO films tempered at 700 °C for 260 s possesses the resistivity of 7.54 × 10-4 Ω•cm, the average transmittance in 400 ~ 800 nm of ~80%, and the calculated emissivity of 0.38. Hall mobility of FTO films tempered in this proper condition is mainly limited by the ionized impurity scattering. The value of [O]/[Sn] at the film surface is much higher than the stoichiometric value of 2.0 of pure crystalline SnO2.
The effectiveness of common thermo-regulatory behaviours in a cool temperate grasshopper.

Science.gov (United States)

Harris, Rebecca M B; McQuillan, Peter; Hughes, Lesley

2015-08-01

Behavioural thermoregulation has the potential to alleviate the short-term impacts of climate change on some small ectotherms, without the need for changes to species distributions or genetic adaptation. We illustrate this by measuring the effect of behaviour in a cool temperate species of grasshopper (Phaulacridium vittatum) over a range of spatial and temporal scales in laboratory and natural field experiments. Microhabitat selection at the site scale was tested in free-ranging grasshoppers and related to changing thermal quality over a daily period. Artificial warming experiments were then used to measure the temperature at which common thermoregulatory behaviours are initiated and the subsequent reductions in body temperature. Behavioural means such as timing of activity, choice of substrates with optimum surface temperatures, shade seeking and postural adjustments (e.g. stilting, vertical orientation) were found to be highly effective at maintaining preferred body temperature. The maximum voluntarily tolerated temperature (MVT) was determined to be 44°C±0.4°C, indicating the upper bounds of thermal flexibility in this species. Behavioural thermoregulation effectively enables small ectotherms to regulate exposure to changing environmental temperatures and utilize the spatially and temporally heterogeneous environments they occupy. Species such as the wingless grasshopper, although adapted to cool temperate conditions, are likely to be well equipped to respond successfully to coarse scale climate change. Copyright © 2015 Elsevier Ltd. All rights reserved.
Analysis of mechanical properties of steel 1045 plasma nitriding: with and without tempering

International Nuclear Information System (INIS)

Machado, N.T.B.; Passos, M.L.M. dos; Riani, J.C.; Recco, A.A.C.

2014-01-01

The purpose of this study was to evaluate the possibility of tempering during the nitriding of AISI 1045 steel. The objective was to evaluate the possibility of eliminating this phase, with the nitriding properties remaining unaltered. For this, three parameter samples were compared: quenched, tempered and nitrided for 2h; quenching and nitrided for 2h and quenching and nitrided for 4h. The analysis techniques used for characterizing the samples before and after nitriding were optical microscopy, hardness Rockwell C (HRC), scanning electron microscopy (SEM), X-ray diffraction (XRD). Results showed that phase γ is the most favorable of all parameters tested. The hardness assays showed that samples with different initial hardness (with and without tempering) and even nitriding time showed similar mechanical properties. This fact suggests that the tempering process occurred parallel to the nitriding process. (author)
Temperate bacterial viruses as double-edged swords in bacterial warfare.

Science.gov (United States)

Gama, João Alves; Reis, Ana Maria; Domingues, Iolanda; Mendes-Soares, Helena; Matos, Ana Margarida; Dionisio, Francisco

2013-01-01

It has been argued that bacterial cells may use their temperate viruses as biological weapons. For instance, a few bacterial cells among a population of lysogenic cells could release the virus and kill susceptible non-lysogenic competitors, while their clone mates would be immune. Because viruses replicate inside their victims upon infection, this process would amplify their number in the arena. Sometimes, however, temperate viruses spare recipient cells from death by establishing themselves in a dormant state inside cells. This phenomenon is called lysogenization and, for some viruses such as the λ virus, the probability of lysogenization increases with the multiplicity of infection. Therefore, the amplification of viruses leads to conflicting predictions about the efficacy of temperate viruses as biological weapons: amplification can increase the relative advantage of clone mates of lysogens but also the likelihood of saving susceptible cells from death, because the probability of lysogenization is higher. To test the usefulness of viruses as biological weapons, we performed competition experiments between lysogenic Escherichia coli cells carrying the λ virus and susceptible λ-free E. coli cells, either in a structured or unstructured habitat. In structured and sometimes in unstructured habitats, the λ virus qualitatively behaved as a "replicating toxin". However, such toxic effect of λ viruses ceased after a few days of competition. This was due to the fact that many of initially susceptible cells became lysogenic. Massive lysogenization of susceptible cells occurred precisely under the conditions where the amplification of the virus was substantial. From then on, these cells and their descendants became immune to the λ virus. In conclusion, if at short term bacterial cells may use temperate viruses as biological weapons, after a few days only the classical view of temperate bacterial viruses as parasitic agents prevails.
Temperate bacterial viruses as double-edged swords in bacterial warfare.

Directory of Open Access Journals (Sweden)

João Alves Gama

Full Text Available It has been argued that bacterial cells may use their temperate viruses as biological weapons. For instance, a few bacterial cells among a population of lysogenic cells could release the virus and kill susceptible non-lysogenic competitors, while their clone mates would be immune. Because viruses replicate inside their victims upon infection, this process would amplify their number in the arena. Sometimes, however, temperate viruses spare recipient cells from death by establishing themselves in a dormant state inside cells. This phenomenon is called lysogenization and, for some viruses such as the λ virus, the probability of lysogenization increases with the multiplicity of infection. Therefore, the amplification of viruses leads to conflicting predictions about the efficacy of temperate viruses as biological weapons: amplification can increase the relative advantage of clone mates of lysogens but also the likelihood of saving susceptible cells from death, because the probability of lysogenization is higher. To test the usefulness of viruses as biological weapons, we performed competition experiments between lysogenic Escherichia coli cells carrying the λ virus and susceptible λ-free E. coli cells, either in a structured or unstructured habitat. In structured and sometimes in unstructured habitats, the λ virus qualitatively behaved as a "replicating toxin". However, such toxic effect of λ viruses ceased after a few days of competition. This was due to the fact that many of initially susceptible cells became lysogenic. Massive lysogenization of susceptible cells occurred precisely under the conditions where the amplification of the virus was substantial. From then on, these cells and their descendants became immune to the λ virus. In conclusion, if at short term bacterial cells may use temperate viruses as biological weapons, after a few days only the classical view of temperate bacterial viruses as parasitic agents prevails.
Groundwater flow modelling of periods with temperate climate conditions - Forsmark

Energy Technology Data Exchange (ETDEWEB)

Joyce, Steven; Simpson, Trevor; Hartley, Lee; Applegate, David; Hoek, Jaap; Jackson, Peter; Swan, David (Serco Technical Consulting Services (United Kingdom)); Marsic, Niko (Kemakta Konsult AB (Sweden)); Follin, Sven (SF GeoLogic AB (Sweden))

2010-11-15

As a part of the license application for a final repository for spent nuclear fuel at Forsmark, the Swedish Nuclear Fuel and Waste Management Company (SKB) has undertaken a series of groundwater flow modelling studies. These represent time periods with different climate conditions and the simulations carried out contribute to the overall evaluation of the repository design and long-term radiological safety. This report concerns the modelling of a repository at the Forsmark site during temperate conditions; i.e. from post-closure and throughout the temperate period up until the receding shoreline leaves the modelling domain at around 12,000 AD. The collation and implementation of onsite hydrogeological and hydrogeochemical data from previous reports are used in the construction of a hydrogeological base case (reference case conceptualisation) and then in an examination of various areas of uncertainty within the current understanding by a series of model variants. The hydrogeological base case models at three different scales, 'repository', 'site' and 'regional', make use of continuous porous medium (CPM), equivalent continuous porous medium (ECPM) and discrete fracture network (DFN) models. The use of hydrogeological models allow for the investigation of the groundwater flow from a deep disposal facility to the biosphere and for the calculation of performance measures that will provide an input to the site performance assessment. The focus of the study described in this report has been to perform numerical simulations of the hydrogeological system from post-closure and throughout the temperate period. Besides providing quantitative results for the immediate temperate period following post-closure, these results are also intended to give a qualitative indication of the evolution of the groundwater system during future temperate periods within an ongoing cycle of glacial/inter-glacial events
Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing

Energy Technology Data Exchange (ETDEWEB)

Hellsten, Uffe [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Wright, Kevin M. [Harvard Univ., Cambridge, MA (United States); Jenkins, Jerry [USDOE Joint Genome Inst., Walnut Creek, CA (United States); HudsonAlpha Inst. of Biotechnology, Huntsville, AL (United States); Shu, Shengqiang [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Yuan, Yao-Wu [Univ. of Connecticut, Storrs, CT (United States); Wessler, Susan R. [Univ. of California, Riverside, CA (United States); Schmutz, Jeremy [USDOE Joint Genome Inst., Walnut Creek, CA (United States); HudsonAlpha Inst. of Biotechnology, Huntsville, AL (United States); Willis, John H. [Duke Univ., Durham, NC (United States); Rokhsar, Daniel S. [USDOE Joint Genome Inst., Walnut Creek, CA (United States); Univ. of California, Berkeley, CA (United States)

2013-11-13

Meiotic recombination rates can vary widely across genomes, with hotspots of intense activity interspersed among cold regions. In yeast, hotspots tend to occur in promoter regions of genes, whereas in humans and mice hotspots are largely defined by binding sites of the PRDM9 protein. To investigate the detailed recombination pattern in a flowering plant we use shotgun resequencing of a wild population of the monkeyflower Mimulus guttatus to precisely locate over 400,000 boundaries of historic crossovers or gene conversion tracts. Their distribution defines some 13,000 hotspots of varying strengths, interspersed with cold regions of undetectably low recombination. Average recombination rates peak near starts of genes and fall off sharply, exhibiting polarity. Within genes, recombination tracts are more likely to terminate in exons than in introns. The general pattern is similar to that observed in yeast, as well as in PRDM9-knockout mice, suggesting that recombination initiation described here in Mimulus may reflect ancient and conserved eukaryotic mechanisms
IdentiPy: an extensible search engine for protein identification in shotgun proteomics.

Science.gov (United States)

Levitsky, Lev I; Ivanov, Mark V; Lobas, Anna A; Bubis, Julia A; Tarasova, Irina A; Solovyeva, Elizaveta M; Pridatchenko, Marina L; Gorshkov, Mikhail V

2018-04-23

We present an open-source, extensible search engine for shotgun proteomics. Implemented in Python programming language, IdentiPy shows competitive processing speed and sensitivity compared with the state-of-the-art search engines. It is equipped with a user-friendly web interface, IdentiPy Server, enabling the use of a single server installation accessed from multiple workstations. Using a simplified version of X!Tandem scoring algorithm and its novel ``auto-tune'' feature, IdentiPy outperforms the popular alternatives on high-resolution data sets. Auto-tune adjusts the search parameters for the particular data set, resulting in improved search efficiency and simplifying the user experience. IdentiPy with the auto-tune feature shows higher sensitivity compared with the evaluated search engines. IdentiPy Server has built-in post-processing and protein inference procedures and provides graphic visualization of the statistical properties of the data set and the search results. It is open-source and can be freely extended to use third-party scoring functions or processing algorithms, and allows customization of the search workflow for specialized applications.
Herbivores modify selection on plant functional traits in a temperate rainforest understory.

Science.gov (United States)

Salgado-Luarte, Cristian; Gianoli, Ernesto

2012-08-01

There is limited evidence regarding the adaptive value of plant functional traits in contrasting light environments. It has been suggested that changes in these traits in response to light availability can increase herbivore susceptibility. We tested the adaptive value of plant functional traits linked with carbon gain in contrasting light environments and also evaluated whether herbivores can modify selection on these traits in each light environment. In a temperate rainforest, we examined phenotypic selection on functional traits in seedlings of the pioneer tree Aristotelia chilensis growing in sun (canopy gap) and shade (forest understory) and subjected to either natural herbivory or herbivore exclusion. We found differential selection on functional traits depending on light environment. In sun, there was positive directional selection on photosynthetic rate and relative growth rate (RGR), indicating that selection favors competitive ability in a high-resource environment. Seedlings with high specific leaf area (SLA) and intermediate RGR were selected in shade, suggesting that light capture and conservative resource use are favored in the understory. Herbivores reduced the strength of positive directional selection acting on SLA in shade. We provide the first demonstration that natural herbivory rates can change the strength of selection on plant ecophysiological traits, that is, attributes whose main function is resource uptake. Research addressing the evolution of shade tolerance should incorporate the selective role of herbivores.
Direct dating and identity of fiber temper in pre-contact Bushman (Masarwa) pottery

CSIR Research Space (South Africa)

Bollong, CA

1993-01-01

Full Text Available , ashed grass, or absorbed blood. Visual characteristics rule out the possibility of animal dung temper. Blood and fat residues absorbed by grass temper could be the combined cause of anomalous Q (13) C and high P values....
The possibility of tribopair lifetime extending by welding of quenched and tempered stainless steel with quenched and tempered carbon steel

Directory of Open Access Journals (Sweden)

V. Marušić

2015-04-01

Full Text Available In the conditions of tribocorrosion wear, extending of parts lifetime could be achieved by using stainless steel,which is hardened to sufficiently high hardness. In the tribosystem bolt/ bushing shell/link plate of the bucket elevator transporter conveyor machine, the previously quenched and tempered martensitic stainless steel for bolts is hardened at ≈47 HRC and welded with the quenched and tempered high yield carbon steel for bolts. Additional material, based on Cr-Ni-Mo (18/8/6 is used. The microstructure and hardness of welded samples are tested. On the tensile tester, resistance of the welded joint is tested with a simulated experiment. Dimensional control of worn tribosystem elements was performed after six months of service.
Shotgun metagenomics of 250 adult twins reveals genetic and environmental impacts on the gut microbiome

DEFF Research Database (Denmark)

Xie, Hailiang; Guo, Ruijin; Zhong, Huanzi

2016-01-01

The gut microbiota has been typically viewed as an environmental factor for human health. Twins are well suited for investigating the concordance of their gut microbiomes and decomposing genetic and environmental influences. However, existing twin studies utilizing metagenomic shotgun sequencing...... have included only a few samples. Here, we sequenced fecal samples from 250 adult twins in the TwinsUK registry and constructed a comprehensive gut microbial reference gene catalog. We demonstrate heritability of many microbial taxa and functional modules in the gut microbiome, including those...... associated with diseases. Moreover, we identified 8 million SNPs in the gut microbiome and observe a high similarity in microbiome SNPs between twins that slowly decreases after decades of living apart. The results shed new light on the genetic and environmental influences on the composition and function...
Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high-resolution shotgun lipidomics

DEFF Research Database (Denmark)

Jensen, Sara Munk; Brandl, Martin; Treusch, Alexander H

2015-01-01

The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high-resolution shotgun lipidomics......-resolution Fourier transform mass spectrometry using an ion trap-orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub-ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we...... performed structural analysis using multistage activation on the ion trap-orbitrap instrument as well as tandem mass analysis using a quadrupole time-of-flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described...
World temperate fruit production: characteristics and challenges

Directory of Open Access Journals (Sweden)

Jorge B. Retamales

2011-10-01

Full Text Available In the last 30 years world population has increased 70% but per capita global fruit consumption is only 20% higher. Even though tropical and temperate fruit have similar contributions to the 50 kg/person/year of US consumption of fresh fruit, in the last 30 years this has been slightly greater for temperate fruit. Within fruit consumption, the largest expansion has been for organic fruit which increased more than 50% in the 2002-2006 period. The largest expansion of area planted in the 1996-2006 has been for kiwi (29% and blueberries (20%, while apples (-24% and sour cherries (-13% have had the largest reductions. Nearly 50% of the total global volume of fruit is produced by 5 countries: China, USA, Brazil, Italy and Spain. The main producer (China accounts for 23% of the total. While the main exporters are Spain, USA and Italy, the main importers are Germany, Russia and UK. Demands for the industry have evolved towards quality, food safety and traceability. The industry faces higher productions costs (labor, energy, agrichemicals. The retailers are moving towards consolidation while the customers are changing preferences (food for health. In this context there is greater pressure on growers, processors and retailers. Emerging issues are labor supply, climate change, water availability and sustainability. Recent developments in precision agriculture, molecular biology, phenomics, crop modelling and post harvest physiology should increase yields and quality, and reduce costs for temperate fruit production around the world.

Linking Well-Tempered Metadynamics Simulations with Experiments

Science.gov (United States)

Barducci, Alessandro; Bonomi, Massimiliano; Parrinello, Michele

2010-01-01

Abstract Linking experiments with the atomistic resolution provided by molecular dynamics simulations can shed light on the structure and dynamics of protein-disordered states. The sampling limitations of classical molecular dynamics can be overcome using metadynamics, which is based on the introduction of a history-dependent bias on a small number of suitably chosen collective variables. Even if such bias distorts the probability distribution of the other degrees of freedom, the equilibrium Boltzmann distribution can be reconstructed using a recently developed reweighting algorithm. Quantitative comparison with experimental data is thus possible. Here we show the potential of this combined approach by characterizing the conformational ensemble explored by a 13-residue helix-forming peptide by means of a well-tempered metadynamics/parallel tempering approach and comparing the reconstructed nuclear magnetic resonance scalar couplings with experimental data. PMID:20441734
Index for characterizing post-fire soil environments in temperate coniferous forests

Science.gov (United States)

Theresa B. Jain; David S. Pilliod; Russell T. Graham; Leigh B. Lentile; Jonathan E. Sandquist

2012-01-01

Many scientists and managers have an interest in describing the environment following a fire to understand the effects on soil productivity, vegetation growth, and wildlife habitat, but little research has focused on the scientific rationale for classifying the post-fire environment. We developed an empirically-grounded soil post-fire index (PFI) based on available...
The longevity of broadleaf deciduous trees in Northern Hemisphere temperate forests: insights from tree-ring series

Directory of Open Access Journals (Sweden)

Alfredo eDi Filippo

2015-05-01

Full Text Available Understanding the factors controlling the expression of longevity in trees is still an outstanding challenge for tree biologists and forest ecologists. We gathered tree-ring data and literature for broadleaf deciduous (BD temperate trees growing in closed-canopy old-growth forests in the Northern Hemisphere to explore the role of geographic patterns, climate variability, and growth rates on longevity. Our pan-continental analysis, covering 32 species from 12 genera, showed that 300-400 years can be considered a baseline threshold for maximum tree lifespan in many temperate deciduous forests. Maximum age varies greatly in relation to environmental features, even within the same species. Tree longevity is generally promoted by reduced growth rates across large genetic differences and environmental gradients. We argue that slower growth rates, and the associated smaller size, provide trees with an advantage against biotic and abiotic disturbance agents, supporting the idea that size, not age, is the main constraint to tree longevity. The oldest trees were living most of their life in subordinate canopy conditions and/or within primary forests in cool temperate environments and outside major storm tracks. Very old trees are thus characterized by slow growth and often live in forests with harsh site conditions and infrequent disturbance events that kill much of the trees. Temperature inversely controls the expression of longevity in mesophilous species (Fagus spp., but its role in Quercus spp. is more complex and warrants further research in disturbance ecology. Biological, ecological and historical drivers must be considered to understand the constraints imposed to longevity within different forest landscapes.
First Evidence of an Important Organic Matter Trophic Pathway between Temperate Corals and Pelagic Microbial Communities.

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J A Fonvielle

Full Text Available Mucus, i.e., particulate and dissolved organic matter (POM, DOM released by corals, acts as an important energy carrier in tropical ecosystems, but little is known on its ecological role in temperate environments. This study assessed POM and DOM production by the temperate coral Cladocora caespitosa under different environmental conditions. The subsequent enzymatic degradation, growth of prokaryotes and virus-like particles (VLPs as well as changes in the structure of the prokaryotic communities were also monitored. C. caespitosa produced an important quantity of mucus, which varied according to the environmental conditions (from 37.8 to 67.75 nmol carbon h-1 cm-2, but remained higher or comparable to productions observed in tropical corals. It has an important nutritional value, as highlighted by the high content in dissolved nitrogen (50% to 90% of the organic matter released. Organic matter was rapidly degraded by prokaryotes' enzymatic activities, and due to its nitrogen content, aminopeptidase activity was 500 fold higher than the α-glucosidase activity. Prokaryotes, as well as VLPs, presented a rapid growth in the mucus, with prokaryote production rates as high as 0.31 μg h-1 L-1. Changes in bacterial and archaeal communities were observed in the ageing mucus and between mucus and the water column, suggesting a clear impact of mucus on microorganism diversity. Overall, our results show that the organic matter released by temperate corals, such as C. caespitosa, which can form reef structures in the Mediterranean Sea, stimulates microbial activity and thereby functions as a significant carbon and nitrogen supplier to the microbial loop.
Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production Chain.

Science.gov (United States)

Yang, Xiang; Noyes, Noelle R; Doster, Enrique; Martin, Jennifer N; Linke, Lyndsey M; Magnuson, Roberta J; Yang, Hua; Geornaras, Ifigenia; Woerner, Dale R; Jones, Kenneth L; Ruiz, Jaime; Boucher, Christina; Morley, Paul S; Belk, Keith E

2016-04-01

Foodborne illnesses associated with pathogenic bacteria are a global public health and economic challenge. The diversity of microorganisms (pathogenic and nonpathogenic) that exists within the food and meat industries complicates efforts to understand pathogen ecology. Further, little is known about the interaction of pathogens within the microbiome throughout the meat production chain. Here, a metagenomic approach and shotgun sequencing technology were used as tools to detect pathogenic bacteria in environmental samples collected from the same groups of cattle at different longitudinal processing steps of the beef production chain: cattle entry to feedlot, exit from feedlot, cattle transport trucks, abattoir holding pens, and the end of the fabrication system. The log read counts classified as pathogens per million reads for Salmonella enterica,Listeria monocytogenes,Escherichia coli,Staphylococcus aureus, Clostridium spp. (C. botulinum and C. perfringens), and Campylobacter spp. (C. jejuni,C. coli, and C. fetus) decreased over subsequential processing steps. Furthermore, the normalized read counts for S. enterica,E. coli, and C. botulinumwere greater in the final product than at the feedlots, indicating that the proportion of these bacteria increased (the effect on absolute numbers was unknown) within the remaining microbiome. From an ecological perspective, data indicated that shotgun metagenomics can be used to evaluate not only the microbiome but also shifts in pathogen populations during beef production. Nonetheless, there were several challenges in this analysis approach, one of the main ones being the identification of the specific pathogen from which the sequence reads originated, which makes this approach impractical for use in pathogen identification for regulatory and confirmation purposes. Copyright © 2016 Yang et al.
Strategies for Constraining the Atmospheres of Temperate Terrestrial Planets with JWST

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Batalha, Natasha E.; Lewis, Nikole K.; Line, Michael R.; Valenti, Jeff; Stevenson, Kevin

2018-04-01

The Transiting Exoplanet Survey Satellite (TESS) is expected to discover dozens of temperate terrestrial planets orbiting M-dwarfs with atmospheres that could be followed up with the James Webb Space Telescope (JWST). Currently, the TRAPPIST-1 system serves as a benchmark for determining the feasibility and resources required to yield atmospheric constraints. We assess these questions and leverage an information content analysis to determine observing strategies for yielding high-precision spectroscopy in transmission and emission. Our goal is to guide observing strategies of temperate terrestrial planets in preparation for the early JWST cycles. First, we explore JWST’s current capabilities and expected spectral precision for targets near the saturation limits of specific modes. In doing so, we highlight the enhanced capabilities of high-efficiency readout patterns that are being considered for implementation in Cycle 2. We propose a partial saturation strategy to increase the achievable precision of JWST's NIRSpec Prism. We show that JWST has the potential to detect the dominant absorbing gas in the atmospheres of temperate terrestrial planets by the 10th transit using transmission spectroscopy techniques in the near-infrared (NIR). We also show that stacking ⪆10 transmission spectroscopy observations is unlikely to yield significant improvements in determining atmospheric composition. For emission spectroscopy, we show that the MIRI Low Resolution Spectroscopy (LRS) is unlikely to provide robust constraints on the atmospheric composition of temperate terrestrial planets. Higher-precision emission spectroscopy at wavelengths longward of those accessible to MIRI LRS, as proposed in the Origins Space Telescope concept, could help improve the constraints on molecular abundances of temperate terrestrial planets orbiting M-dwarfs.
Microbial community profiling of human saliva using shotgun metagenomic sequencing.

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Nur A Hasan

Full Text Available Human saliva is clinically informative of both oral and general health. Since next generation shotgun sequencing (NGS is now widely used to identify and quantify bacteria, we investigated the bacterial flora of saliva microbiomes of two healthy volunteers and five datasets from the Human Microbiome Project, along with a control dataset containing short NGS reads from bacterial species representative of the bacterial flora of human saliva. GENIUS, a system designed to identify and quantify bacterial species using unassembled short NGS reads was used to identify the bacterial species comprising the microbiomes of the saliva samples and datasets. Results, achieved within minutes and at greater than 90% accuracy, showed more than 175 bacterial species comprised the bacterial flora of human saliva, including bacteria known to be commensal human flora but also Haemophilus influenzae, Neisseria meningitidis, Streptococcus pneumoniae, and Gamma proteobacteria. Basic Local Alignment Search Tool (BLASTn analysis in parallel, reported ca. five times more species than those actually comprising the in silico sample. Both GENIUS and BLAST analyses of saliva samples identified major genera comprising the bacterial flora of saliva, but GENIUS provided a more precise description of species composition, identifying to strain in most cases and delivered results at least 10,000 times faster. Therefore, GENIUS offers a facile and accurate system for identification and quantification of bacterial species and/or strains in metagenomic samples.
Hardness prediction of HAZ in temper bead welding by non-consistent layer technique

International Nuclear Information System (INIS)

Yu, Lina; Saida, Kazuyoshi; Mochizuki, Masahito; Kameyama, Masashi; Chigusa, Naoki; Nishimoto, Kazutoshi

2014-01-01

Based on the experimentally obtained hardness database, the neural network-based hardness prediction system of heat affect zone (HAZ) in temper bead welding by Consistent Layer (CSL) technique has been constructed by the authors. However in practical operation, CSL technique is sometimes difficult to perform because of difficulty of the precise heat input controlling, and in such case non-CSL techniques are mainly used in the actual repair process. Therefore in the present study, the neural network-based hardness prediction system of HAZ in temper bead welding by non-CSL techniques has been constructed through thermal cycle simplification, from the view of engineering. The hardness distribution in HAZ with non-CSL techniques was calculated based on the thermal cycles numerically obtained by finite element method. The experimental result has shown that the predicted hardness is in good accordance with the measured ones. It follows that the currently proposed method is effective for estimating the tempering effect during temper bead welding by non-CSL techniques. (author)
Modification of Low-Alloy Steel Surface by High-Temperature Gas Nitriding Plus Tempering

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Jiao, Dongling; Li, Minsong; Ding, Hongzhen; Qiu, Wanqi; Luo, Chengping

2018-02-01

The low-alloy steel was nitrided in a pure NH3 gas atmosphere at 640 660 °C for 2 h, i.e., high-temperature gas nitriding (HTGN), followed by tempering at 225 °C, which can produce a high property surface coating without brittle compound (white) layer. The steel was also plasma nitriding for comparison. The composition, microstructure and microhardness of the nitrided and tempered specimens were examined, and their tribological behavior investigated. The results showed that the as-gas-nitrided layer consisted of a white layer composed of FeN0.095 phase (nitrided austenite) and a diffusional zone underneath the white layer. After tempering, the white layer was decomposed to a nano-sized (α-Fe + γ'-Fe4N + retained austenite) bainitic microstructure with a high hardness of 1150HV/25 g. Wear test results showed that the wear resistance and wear coefficient yielded by the complex HTGN plus tempering were considerably higher and lower, respectively, than those produced by the conventional plasma nitriding.
Quantitative consideration for the tempering effect during multi-pass thermal cycle in HAZ of low-alloy steel

International Nuclear Information System (INIS)

Yu, Lina; Nakabayashi, Yuma; Saida, Kazuyoshi; Mochizuki, Masahito; Nishimoto, Kazutoshi; Kameyama, Masashi; Hirano, Shinro; Chigusa, Naoki

2011-01-01

A new Thermal Cycle Tempering Parameter (TCTP) to deal with the tempering effect during multi-pass thermal cycles has been proposed by extending Larson-Miller parameter (LMP). Experimental result revealed that the hardness in synthetic HAZ of the low alloy steel subjected to multi tempering thermal cycles has a good linear relationship with TCTP. By using this relationship, the hardness of the low-alloy steel reheated with tempering thermal cycles can be predicted when the original hardness is known. (author)
A Novel Methods for Fracture Toughness Evaluation of Tool Steels with Post-Tempering Cryogenic Treatment

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Ramona Sola

2017-02-01

Full Text Available Cryogenic treatments are usually carried out immediately after quenching, but their use can be extended to post tempering in order to improve their fracture toughness. This research paper focuses on the influence of post-tempering cryogenic treatment on the microstructure and mechanical properties of tempered AISI M2, AISI D2, and X105CrCoMo18 steels. The aforementioned steels have been analysed after tempering and tempering + cryogenic treatment with scanning electron microscopy, X-ray diffraction for residual stress measurements, and micro- and nano-indentation to determine Young’s modulus and plasticity factor measurement. Besides the improvement of toughness, a further aim of the present work is the investigation of the pertinence of a novel technique for characterizing the fracture toughness via scratch experiments on cryogenically-treated steels. Results show that the application of post-tempering cryogenic treatment on AISI M2, AISI D2, and X105CrCoMo18 steels induce precipitation of fine and homogeneously dispersed sub-micrometric carbides which do not alter hardness and Young’s modulus values, but reduce residual stresses and increase fracture toughness. Finally, scratch test proved to be an alternative simple technique to determine the fracture toughness of cryogenically treated steels.
Quantifying the effects of tempering on individual phase properties of DP980 steel with nanoindentation

Energy Technology Data Exchange (ETDEWEB)

Cheng, G.; Zhang, F.; Ruimi, A.; Field, D. P.; Sun, X.

2016-06-01

We conduct a series of thermal and mechanical testing on a commercial dual phase (DP) 980 steel in order to quantify the effects of tempering on its individual phase properties. Tempering treatment is conducted at 250 °C and 400 °C for 60 minutes each. Ferrite and martensite grains are distinguished using electron backscatter diffraction (EBSD) and scanning probe microscopy (SPM), and the martensite volume fractions (MVF) are determined based on the image quality (IQ) map. Multi-scale indentation tests combined with a newly developed inverse method are used to obtain the individual phase flow properties in each tempered DP980 sample. The results show that, i) tempering significantly reduces martensite yield strength, while it only slightly reduces the ferrite yield strength; ii) tempering temperature has a more significant influence on the work hardening exponent of ferrite than that of martensite; iii) the elastic modulus of martensite is consistently higher than that of ferrite. As a validation, a simple rule of mixtures is used to verify the above-predicted individual phase flow stresses with the experimentally obtained overall true stress vs. true strain curves. The methodology and the corresponding results shown in this study can help guide the selection of tempering parameters in optimizing the mechanical properties of DP steels for their intended applications.
Species associations structured by environment and land-use history promote beta-diversity in a temperate forest.

Science.gov (United States)

Murphy, Stephen J; Audino, Livia D; Whitacre, James; Eck, Jenalle L; Wenzel, John W; Queenborough, Simon A; Comita, Liza S

2015-03-01

Patterns of diversity and community composition in forests are controlled by a combination of environmental factors, historical events, and stochastic or neutral mechanisms. Each of these processes has been linked to forest community assembly, but their combined contributions to alpha and beta-diversity in forests has not been well explored. Here we use variance partitioning to analyze approximately 40,000 individual trees of 49 species, collected within 137 ha of sampling area spread across a 900-ha temperate deciduous forest reserve in Pennsylvania to ask (1) To what extent is site-to-site variation in species richness and community composition of a temperate forest explained by measured environmental gradients and by spatial descriptors (used here to estimate dispersal-assembly or unmeasured, spatially structured processes)? (2) How does the incorporation of land-use history information increase the importance attributed to deterministic community assembly? and (3) How do the distributions and abundances of individual species within the community correlate with these factors? Environmental variables (i.e., topography, soils, and distance to stream), spatial descriptors (i.e., spatial eigenvectors derived from Cartesian coordinates), and land-use history variables (i.e., land-use type and intensity, forest age, and distance to road), explained about half of the variation in both species richness and community composition. Spatial descriptors explained the most variation, followed by measured environmental variables and then by land- use history. Individual species revealed variable responses to each of these sets of predictor variables. Several species were associated with stream habitats, and others were strictly delimited across opposing north- and south-facing slopes. Several species were also associated with areas that experienced recent (i.e., indicate that deterministic factors, including environmental and land-use history variables, are important drivers
Effect of Tempering and Baking on the Charpy Impact Energy of Hydrogen-Charged 4340 Steel

Science.gov (United States)

Mori, K.; Lee, E. W.; Frazier, W. E.; Niji, K.; Battel, G.; Tran, A.; Iriarte, E.; Perez, O.; Ruiz, H.; Choi, T.; Stoyanov, P.; Ogren, J.; Alrashaid, J.; Es-Said, O. S.

2015-01-01

Tempered AISI 4340 steel was hydrogen charged and tested for impact energy. It was found that samples tempered above 468 °C (875 °F) and subjected to hydrogen charging exhibited lower impact energy values when compared to uncharged samples. No significant difference between charged and uncharged samples tempered below 468 °C (875 °F) was observed. Neither exposure nor bake time had any significant effect on impact energy within the tested ranges.
The Temperance Movement and Social Work

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Murdach, Allison D.

2009-01-01

This article examines a forgotten episode in social work history: the involvement of the profession in the temperance movement in the late 19th and early 20th centuries. Though some notable social workers such as Jane Addams, Robert A. Woods, and Representative Jeannette Rankin (the first woman elected to the U.S. Congress), championed the…
The Kinetics of Phase Transformations During Tempering in Laser Melted High Chromium Cast Steel

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Li, M. Y.; Wang, Y.; Han, B.

2012-06-01

The precipitation of secondary carbides in the laser melted high chromium cast steels during tempering at 300-650 °C for 2 h in air furnace was characterized and the present phases was identified, by using transmission electron microscopy. Laser melted high chromium cast steel consists of austenitic dendrites and interdendritic M23C6 carbides. The austenite has such a strong tempering stability that it remains unchanged at temperature below 400 °C and the secondary hardening phenomenon starts from 450 °C to the maximum value of 672 HV at 560 °C. After tempering at 450 °C fine M23C6 carbides precipitate from the supersaturated austenite preferentially. In addition, the dislocation lines and slip bands still exist inside the austenite. While tempering at temperature below 560 °C, the secondary hardening simultaneously results from the martensite phase transformation and the precipitation of carbides as well as dislocation strengthening within a refined microstructure. Moreover, the formation of the ferrite matrix and large quality of coarse lamellar M3C carbides when the samples were tempered at 650 °C contributes to the decrease of hardness.
Biochar boosts tropical but not temperate crop yields

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Jeffery, Simon; Abalos, Diego; Prodana, Marija; Catarina Bastos, Ana; van Groenigen, Jan Willem; Hungate, Bruce A.; Verheijen, Frank

2017-05-01

Applying biochar to soil is thought to have multiple benefits, from helping mitigate climate change [1, 2], to managing waste [3] to conserving soil [4]. Biochar is also widely assumed to boost crop yield [5, 6], but there is controversy regarding the extent and cause of any yield benefit [7]. Here we use a global-scale meta-analysis to show that biochar has, on average, no effect on crop yield in temperate latitudes, yet elicits a 25% average increase in yield in the tropics. In the tropics, biochar increased yield through liming and fertilization, consistent with the low soil pH, low fertility, and low fertilizer inputs typical of arable tropical soils. We also found that, in tropical soils, high-nutrient biochar inputs stimulated yield substantially more than low-nutrient biochar, further supporting the role of nutrient fertilization in the observed yield stimulation. In contrast, arable soils in temperate regions are moderate in pH, higher in fertility, and generally receive higher fertilizer inputs, leaving little room for additional benefits from biochar. Our findings demonstrate that the yield-stimulating effects of biochar are not universal, but may especially benefit agriculture in low-nutrient, acidic soils in the tropics. Biochar management in temperate zones should focus on potential non-yield benefits such as lime and fertilizer cost savings, greenhouse gas emissions control, and other ecosystem services.
Effect of tempering time on the ballistic performance of a high strength armour steel

OpenAIRE

Jena, Pradipta Kumar; Senthil P., Ponguru; K., Siva Kumar

2016-01-01

The investigation describes and analyses the effect of tempering time on the mechanical and ballistic performance of a high strength armour steel. The steel is subjected to tempering at 300 °C for 2, 24 and 48 h. A marginal variation in strength and hardness is observed with increase in tempering time, whereas ductility and Charpy impact values are found to be decreasing. Ballistic performance of the samples are evaluated by impacting 7.62 mm and 12.7 mm armour piercing projectiles at 0° angl...
Internal strains after recovery of hardness in tempered martensitic steels for fusion reactors

Science.gov (United States)

Brunelli, L.; Gondi, P.; Montanari, R.; Coppola, R.

1991-03-01

After tempering, with recovery of hardness, MANET steels present internal strains; these residual strains increase with quenching rate prior to tempering, and they remain after prolonged tempering times. On account of their persistence, after thermal treatments which lead to low dislocation and sub-boundary densities, the possibility has been considered that the high swelling resistance of MANET is connected with these centres of strain, probably connected with the formation, in ferrite, of Cr-enriched and contiguous Cr-depleted zones which may act as sinks for interstitials. Comparative observations on the internal strain behaviour of cold worked 316L stainless steel appear consistent with this possibility.
The effect of prior tempering on cryogenic treatment to reduce retained austenite

International Nuclear Information System (INIS)

Stratton, Paul

2010-01-01

The consensus view is that a high carbon case gives gears the best overall properties provided that there is no carbide network and that the retained austenite has been reduced below 20% by cryogenic treatment. This view is effectively enshrined in the SAE AMS 2759/7 standard. The cryogenic treatment usually takes place immediately after the quench to avoid austenite stabilisation. However, for some parts with complex geometries that might crack during the treatment, a short low temperature temper is carried out first. Little is known on how this temper affects the subsequent cryogenic treatment. Three carburizing steels used extensively in the aerospace industry were carburized to produce high retained austenite levels in the case using two different, but typical carburizing cycles. The retained austenite was determined by XRD before and after cryogenic treatment carried out in accordance with the standard and compared with that obtained when an intermediate temper was used. This study shows that for three typical carburizing steels, carburized using typical cycles, the efficacy of the cryogenic treatment is reduced only slightly after the temper, and not enough to be industrially significant. (author)

Characterization of Nanometric-Sized Carbides Formed During Tempering of Carbide-Steel Cermets

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Matus K.

2016-06-01

Full Text Available The aim of this article of this paper is to present issues related to characterization of nanometric-sized carbides, nitrides and/or carbonitrides formed during tempering of carbide-steel cermets. Closer examination of those materials is important because of hardness growth of carbide-steel cermet after tempering. The results obtained during research show that the upswing of hardness is significantly higher than for high-speed steels. Another interesting fact is the displacement of secondary hardness effect observed for this material to a higher tempering temperature range. Determined influence of the atmosphere in the sintering process on precipitations formed during tempering of carbide-steel cermets. So far examination of carbidesteel cermet produced by powder injection moulding was carried out mainly in the scanning electron microscope. A proper description of nanosized particles is both important and difficult as achievements of nanoscience and nanotechnology confirm the significant influence of nanocrystalline particles on material properties even if its mass fraction is undetectable by standard methods. The following research studies have been carried out using transmission electron microscopy, mainly selected area electron diffraction and energy dispersive spectroscopy. The obtained results and computer simulations comparison were made.
Ocean cleaning stations under a changing climate: biological responses of tropical and temperate fish-cleaner shrimp to global warming.

Science.gov (United States)

Rosa, Rui; Lopes, Ana Rita; Pimentel, Marta; Faleiro, Filipa; Baptista, Miguel; Trübenbach, Katja; Narciso, Luis; Dionísio, Gisela; Pegado, Maria Rita; Repolho, Tiago; Calado, Ricardo; Diniz, Mário

2014-10-01

Cleaning symbioses play an important role in the health of certain coastal marine communities. These interspecific associations often occur at specific sites (cleaning stations) where a cleaner organism (commonly a fish or shrimp) removes ectoparasites/damaged tissue from a 'client' (a larger cooperating fish). At present, the potential impact of climate change on the fitness of cleaner organisms remains unknown. This study investigated the physiological and biochemical responses of tropical (Lysmata amboinensis) and temperate (L. seticaudata) cleaner shrimp to global warming. Specifically, thermal limits (CTMax), metabolic rates, thermal sensitivity, heat shock response (HSR), lipid peroxidation [malondialdehyde (MDA) concentration], lactate levels, antioxidant (GST, SOD and catalase) and digestive enzyme activities (trypsin and alkaline phosphatase) at current and warming (+3 °C) temperature conditions. In contrast to the temperate species, CTMax values decreased significantly from current (24-27 °C) to warming temperature conditions (30 °C) for the tropical shrimp, where metabolic thermal sensitivity was affected and the HSR was significantly reduced. MDA levels in tropical shrimp increased dramatically, indicating extreme cellular lipid peroxidation, which was not observed in the temperate shrimp. Lactate levels, GST and SOD activities were significantly enhanced within the muscle tissue of the tropical species. Digestive enzyme activities in the hepatopancreas of both species were significantly decreased by warmer temperatures. Our data suggest that the tropical cleaner shrimp will be more vulnerable to global warming than the temperate Lysmata seticaudata; the latter evolved in a relatively unstable environment with seasonal thermal variations that may have conferred greater adaptive plasticity. Thus, tropical cleaning symbioses may be challenged at a greater degree by warming-related anthropogenic forcing, with potential cascading effects on the health
Iatrogenic artefacts attributable to traditional cupping therapy in a shotgun fatality.

Science.gov (United States)

Cavlak, Mehmet; Özkök, Alper; Sarı, Serhat; Dursun, Ahmet; Akar, Taner; Karapirli, Mustafa; Demirel, Birol

2015-10-01

Cupping is a traditional treatment method that has been used for thousands of years to diminish pain, restore appetite and improve digestion, remove tendency to faint or remove 'bad blood' from the body. The suction of the cup is created by fire or mechanical devices. This procedure may result in circular erythema, petechiae, purpura, ecchymosis, burns and may be mistaken for trauma-related ecchymosis or livor mortis. Forty-year-old male was died by shotgun injuries in the same day of the wounding. Circular ecchymoses were observed on the forehead, within the scalp of occipital region, the back of the neck, and on the back. They were defined as ecchymoses in the first examination made by a general practitioner. In the external examination during the legal autopsy superficial incisions were observed on the circular ecchymoses. The shape, localization and color of and the characteristics of incisions on the circular lesions were concluded to be caused by the dry cupping therapy and wet cupping therapy procedures. These lesions and their formation mechanisms should be well-known by the forensic medical examiners and the other medical personnel involved in the forensic medical examination. Copyright © 2015 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.
Localization and Ballistic Diffusion for the Tempered Fractional Brownian-Langevin Motion

Science.gov (United States)

Chen, Yao; Wang, Xudong; Deng, Weihua

2017-10-01

This paper discusses the tempered fractional Brownian motion (tfBm), its ergodicity, and the derivation of the corresponding Fokker-Planck equation. Then we introduce the generalized Langevin equation with the tempered fractional Gaussian noise for a free particle, called tempered fractional Langevin equation (tfLe). While the tfBm displays localization diffusion for the long time limit and for the short time its mean squared displacement (MSD) has the asymptotic form t^{2H}, we show that the asymptotic form of the MSD of the tfLe transits from t^2 (ballistic diffusion for short time) to t^{2-2H}, and then to t^2 (again ballistic diffusion for long time). On the other hand, the overdamped tfLe has the transition of the diffusion type from t^{2-2H} to t^2 (ballistic diffusion). The tfLe with harmonic potential is also considered.
Grain boundary diffusion in terms of the tempered fractional calculus

International Nuclear Information System (INIS)

Sibatov, R.T.; Svetukhin, V.V.

2017-01-01

Mathematical treatment of grain-boundary diffusion based on the model first proposed by Fisher is usually formulated in terms of normal diffusion equations in a two-component nonhomogeneous medium. On the other hand, fractional equations of anomalous diffusion proved themselves to be useful in description of grain-boundary diffusion phenomena. Moreover, the most important propagation regime predicted by Fisher's model demonstrates subdiffusive behavior. However, the direct link between fractional approach and the Fisher model and its modifications has not found yet. Here, we fill this gap and show that solution of fractional subdiffusion equation offers general properties of classical solutions obtained by Whipple and Suzuoka. The tempered fractional approach is a convenient tool for studying precipitation in granular materials as the tempered subdiffusion limited process. - Highlights: • The link connected fractional diffusion approach and Fisher's model of grain-boundary diffusion is derived. • The subdiffusion exponent of grain-boundary diffusion can differ from 1/2. • Nucleation in granular materials is modeled by the process limited by tempered subdiffusion.
Grain boundary diffusion in terms of the tempered fractional calculus

Energy Technology Data Exchange (ETDEWEB)

Sibatov, R.T., E-mail: ren_sib@bk.ru [Ulyanovsk State University, 432017, 42 Leo Tolstoy str., Ulyanovsk (Russian Federation); Svetukhin, V.V. [Ulyanovsk State University, 432017, 42 Leo Tolstoy str., Ulyanovsk (Russian Federation); Institute of Nanotechnology and Microelectronics of the Russian Academy of Sciences, 115487, 18 Nagatinskaya str., Moscow (Russian Federation)

2017-06-28

Mathematical treatment of grain-boundary diffusion based on the model first proposed by Fisher is usually formulated in terms of normal diffusion equations in a two-component nonhomogeneous medium. On the other hand, fractional equations of anomalous diffusion proved themselves to be useful in description of grain-boundary diffusion phenomena. Moreover, the most important propagation regime predicted by Fisher's model demonstrates subdiffusive behavior. However, the direct link between fractional approach and the Fisher model and its modifications has not found yet. Here, we fill this gap and show that solution of fractional subdiffusion equation offers general properties of classical solutions obtained by Whipple and Suzuoka. The tempered fractional approach is a convenient tool for studying precipitation in granular materials as the tempered subdiffusion limited process. - Highlights: • The link connected fractional diffusion approach and Fisher's model of grain-boundary diffusion is derived. • The subdiffusion exponent of grain-boundary diffusion can differ from 1/2. • Nucleation in granular materials is modeled by the process limited by tempered subdiffusion.
Whole-Genome Shotgun Sequence of the Keratinolytic Bacterium Lysobacter sp. A03, Isolated from the Antarctic Environment

OpenAIRE

Pereira, Jamile Queiroz; Ambrosini, Adriana; Sant?Anna, Fernando Hayashi; Tadra-Sfeir, Michele; Faoro, Helisson; Pedrosa, F?bio Oliveira; Souza, Emanuel Maltempi; Brandelli, Adriano; Passaglia, Luciane M. P.

2015-01-01

Lysobacter sp. strain A03 is a protease-producing bacterium isolated from decomposing-penguin feathers collected in the Antarctic environment. This strain has the ability to degrade keratin at low temperatures. The A03 genome sequence provides the possibility of finding new genes with biotechnological potential to better understand its cold-adaptation mechanism and survival in cold environments.
A Facies Model for Temperate Continental Glaciers.

Science.gov (United States)

Ashley, Gail Mowry

1987-01-01

Discusses the presence and dynamics of continental glaciers in the domination of the physical processes of erosion and deposition in the mid-latitudes during the Pleistocene period. Describes the use of a sedimentary facies model as a guide to recognizing ancient temperate continental glacial deposits. (TW)
Synchrotron micro-diffraction analysis of the microstructure of cryogenically treated high performance tool steels prior to and after tempering

Energy Technology Data Exchange (ETDEWEB)

Xu, N.; Cavallaro, G.P. [Applied Centre for Structural and Synchrotron Studies, Mawson Lakes Blvd, University of South Australia, Mawson Lakes, South Australia 5095 (Australia); Gerson, A.R., E-mail: Andrea.Gerson@unisa.edu.au [Applied Centre for Structural and Synchrotron Studies, Mawson Lakes Blvd, University of South Australia, Mawson Lakes, South Australia 5095 (Australia)

2010-10-15

The phase transformation and strain changes within cryogenically (-196 deg. C) treated high performance tool steels (AISI H13) before and after tempering have been examined using both laboratory XRD and synchrotron micro-diffraction. The martensitic unit cell was found to have very low tetragonality as expected for low carbon steel. Tempering resulted in the diffusion of excess carbon out of the martensite phase and consequent unit cell shrinkage. In addition on tempering the martensite became more homogeneous as compared to the same samples prior to tempering. For cryogenically treated samples, the effect was most pronounced for the rapidly cooled sample which was the least homogenous sample prior to tempering but was the most homogenous sample after tempering. This suggests that the considerable degree of disorder resulting from rapid cryogenic cooling results in the beneficial release of micro-stresses on tempering thus possibly resulting in the improved wear resistance and durability observed for cryogenically treated tool steels.
Synchrotron micro-diffraction analysis of the microstructure of cryogenically treated high performance tool steels prior to and after tempering

International Nuclear Information System (INIS)

Xu, N.; Cavallaro, G.P.; Gerson, A.R.

2010-01-01

The phase transformation and strain changes within cryogenically (-196 deg. C) treated high performance tool steels (AISI H13) before and after tempering have been examined using both laboratory XRD and synchrotron micro-diffraction. The martensitic unit cell was found to have very low tetragonality as expected for low carbon steel. Tempering resulted in the diffusion of excess carbon out of the martensite phase and consequent unit cell shrinkage. In addition on tempering the martensite became more homogeneous as compared to the same samples prior to tempering. For cryogenically treated samples, the effect was most pronounced for the rapidly cooled sample which was the least homogenous sample prior to tempering but was the most homogenous sample after tempering. This suggests that the considerable degree of disorder resulting from rapid cryogenic cooling results in the beneficial release of micro-stresses on tempering thus possibly resulting in the improved wear resistance and durability observed for cryogenically treated tool steels.
Fledgling survival increases with development time and adult survival across north and south temperate zones

Science.gov (United States)

Lloyd, Penn; Martin, Thomas E.

2016-01-01

Slow life histories are characterized by high adult survival and few offspring, which are thought to allow increased investment per offspring to increase juvenile survival. Consistent with this pattern, south temperate zone birds are commonly longer-lived and have fewer young than north temperate zone species. However, comparative analyses of juvenile survival, including during the first few weeks of the post-fledging period when most juvenile mortality occurs, are largely lacking. We combined our measurements of fledgling survival for eight passerines in South Africa with estimates from published studies of 57 north and south temperate zone songbird species to test three predictions: (1) fledgling survival increases with length of development time in the nest; (2) fledgling survival increases with adult survival and reduced brood size controlled for development time; and (3) south temperate zone species, with their higher adult survival and smaller brood sizes, exhibit higher fledgling survival than north temperate zone species controlled for development time. We found that fledgling survival was higher among south temperate zone species and generally increased with development time and adult survival within and between latitudinal regions. Clutch size did not explain additional variation, but was confounded with adult survival. Given the importance of age-specific mortality to life history evolution, understanding the causes of these geographical patterns of mortality is important.
Planetesimal Formation in the Warm, Inner Disk: Experiments with Tempered Dust

Energy Technology Data Exchange (ETDEWEB)

De Beule, Caroline; Landers, Joachim; Salamon, Soma; Wende, Heiko; Wurm, Gerhard, E-mail: gerhard.wurm@uni-due.de [Faculty of Physics, University of Duisburg-Essen, Lotharstr. 1, D-47057 Duisburg (Germany)

2017-03-01

It is an open question how elevated temperatures in the inner parts of protoplanetary disks influence the formation of planetesimals. We approach this problem here by studying the tensile strength of granular beds with dust samples tempered at different temperatures. We find via laboratory experiments that tempering at increasing temperatures is correlated with an increase in cohesive forces. We studied dust samples of palagonite (JSC Mars-1a) which were tempered for up to 200 hr at temperatures between 600 and 1200 K, and measured the relative tensile strengths of highly porous dust layers once the samples cooled to room temperature. Tempering increases the tensile strength from 800 K upwards. This change is accompanied by mineral transformations, the formation of iron oxide crystallites as analyzed by Mössbauer spectroscopy, changes in the number size distribution, and the morphology of the surface visible as cracks in larger grains. These results suggest a difference in the collisional evolution toward larger bodies with increasing temperature as collisional growth is fundamentally based on cohesion. While high temperatures might also increase sticking (not studied here), compositional evolution will already enhance the cohesion and the possibility of growing larger aggregates on the way toward planetesimals. This might lead to a preferred in situ formation of inner planets and explain the observed presence of dense inner planetary systems.
Microstructural, mechanical and electrochemical behaviour of a 7017 Al–Zn–Mg alloy of different tempers

Energy Technology Data Exchange (ETDEWEB)

Rout, Prasanta Kumar, E-mail: prasantonnet55@yahoo.com; Ghosh, M.M.; Ghosh, K.S., E-mail: ksghosh2001@yahoo.co.uk

2015-06-15

The aim of the investigation is to assess the microstructural features and associated physical, mechanical and electrochemical properties of a 7017 Al–Zn–Mg alloy of various tempers. A 7017 Al–Zn–Mg alloy was subjected to different ageing schedules to produce under-(T4), peak-(T6), over-(T7) and highly over-aged tempers. Optical microscopy, hardness measurement, electrical conductivity measurement, tensile testing and SEM fractographs, differential scanning calorimetry (DSC), transmission electron microscopy (TEM), and electrochemical polarization studies have been used to characterize the alloy tempers. Hardness measurement and tensile testing showed the characteristic age hardening phenomenon of aluminium alloys. Optical and TEM micrographs have revealed the variation in size of matrix strengthening η′ (MgZn{sub 2}) and also the size and distribution of grain boundary η (MgZn{sub 2}) precipitate with ageing time. DSC thermograms exhibiting exothermic and endothermic peaks indicated the characteristic solid state reaction sequence of the 7017 alloy. Potentiodynamic polarization study of the 7017 alloy of various tempers in 3.5 wt.% NaCl solution at near neutral pH showed typical active metal dissolution behaviour, but at pH 12 an active–passive–transpassive transition behaviour has been observed. - Graphical abstract: TEM micrograph of the 7017 aluminium alloy of various tempers (a, b) under aged (T4), (c, d) peak aged (T6), (e, f) over aged (T7) and (g, h) highly over-aged. Display Omitted - Highlights: • 7017 Al-Zn-Mg alloy was subjected to different artificial ageing treatments. • Characterization of 7017 alloy tempers by hardness, tensile, DSC, TEM and electrochemical behaviour. • Structure-properties relationship of the 7017 Al-Zn-Mg alloy of various tempers.
Evaluation of temper embrittlement of martensitic and ferritic-martensitic steels by acoustic emission

International Nuclear Information System (INIS)

Lu, Yusho; Takahashi, Hideaki; Shoji, Tetsuo

1987-01-01

Martensitic (HT-9) and ferritic-martensitic steels (9Cr-2Mo) are considered as fusion first wall materials. In this investigation in order to understand the sensitivity of temper embrittlement in these steels under actual service condition, fracture toughness testing was made by use of acoustic emission technique. The temper embrittlement was characterized in terms of fracture toughness. The fracture toughness of these steels under 500 deg C, 100 hrs, and 1000 hrs heat treatment was decreased and their changes in micro-fracture process have been observed. The fracture toughness changes by temper embrittlement was discussed by the characteristic of AE, AE spectrum analysis and fractographic investigation. The relation between micro-fracture processes and AE has been clarified. (author)
Uptake and Persistence of Homologous and Heterologous Zooxanthellae in the Temperate Sea Anemone Cereus pedunculatus (Pennant).

Science.gov (United States)

Davy, S K; Lucas, I A N; Turner, J R

1997-04-01

The uptake and persistence of symbiotic dinoflagellates (zooxanthellae) were measured in the temperate sea anemone Cereus pedunculatus (Pennant). Aposymbiotic specimens of C. pedunculatus were inoculated with zooxanthellae freshly isolated from a range of temperate and subtropical Anthozoa. Each inoculate consisted of zooxanthellae from a single host species and was either homologous (zooxanthellae from a host of the same species as the one being inoculated) or heterologous (from a host of a different species than the one being inoculated). The densities of zooxanthellae in host tissues were determined at regular intervals. C. pedunculatus took up homologous and heterologous zooxanthellae to similar degrees, except for zooxanthellae from the temperate Anthopleura ballii, which were taken up to a lesser extent. The densities of all zooxanthellae declined between 4 hours and 4 days after uptake, indicating that zooxanthellae were expelled, digested, or both during this period. The densities of all zooxanthellae increased between 2 and 8 weeks after inoculation, indicating zooxanthella growth. Over the entire 8-week period after uptake, densities of homologous zooxanthellae were always greater than those of heterologous zooxanthellae. Between 8 and 36 weeks after infection, densities of homologous zooxanthellae declined markedly and densities of some heterologous zooxanthellae increased further, resulting in homologous and heterologous zooxanthella densities being the same at 36 weeks. These densities were the same as those in naturally infected C. pedunculatus of similar size. The results suggest that zooxanthellae from a range of host species and environments can establish symbioses with C. pedunculatus and that, over long periods under laboratory conditions, heterologous zooxanthellae may populate C. pedunculatus to the same extent as homologous zooxanthellae.
Microstructure and Mechanical Properties of Laser Clad and Post-cladding Tempered AISI H13 Tool Steel

Science.gov (United States)

Telasang, Gururaj; Dutta Majumdar, Jyotsna; Wasekar, Nitin; Padmanabham, G.; Manna, Indranil

2015-05-01

This study reports a detailed investigation of the microstructure and mechanical properties (wear resistance and tensile strength) of hardened and tempered AISI H13 tool steel substrate following laser cladding with AISI H13 tool steel powder in as-clad and after post-cladding conventional bulk isothermal tempering [at 823 K (550 °C) for 2 hours] heat treatment. Laser cladding was carried out on AISI H13 tool steel substrate using a 6 kW continuous wave diode laser coupled with fiber delivering an energy density of 133 J/mm2 and equipped with a co-axial powder feeding nozzle capable of feeding powder at the rate of 13.3 × 10-3 g/mm2. Laser clad zone comprises martensite, retained austenite, and carbides, and measures an average hardness of 600 to 650 VHN. Subsequent isothermal tempering converted the microstructure into one with tempered martensite and uniform dispersion of carbides with a hardness of 550 to 650 VHN. Interestingly, laser cladding introduced residual compressive stress of 670 ± 15 MPa, which reduces to 580 ± 20 MPa following isothermal tempering. Micro-tensile testing with specimens machined from the clad zone across or transverse to cladding direction showed high strength but failure in brittle mode. On the other hand, similar testing with samples sectioned from the clad zone parallel or longitudinal to the direction of laser cladding prior to and after post-cladding tempering recorded lower strength but ductile failure with 4.7 and 8 pct elongation, respectively. Wear resistance of the laser surface clad and post-cladding tempered samples (evaluated by fretting wear testing) registered superior performance as compared to that of conventional hardened and tempered AISI H13 tool steel.
Whole-Genome Shotgun Sequence of the Keratinolytic Bacterium Lysobacter sp. A03, Isolated from the Antarctic Environment.

Science.gov (United States)

Pereira, Jamile Queiroz; Ambrosini, Adriana; Sant'Anna, Fernando Hayashi; Tadra-Sfeir, Michele; Faoro, Helisson; Pedrosa, Fábio Oliveira; Souza, Emanuel Maltempi; Brandelli, Adriano; Passaglia, Luciane M P

2015-04-02

Lysobacter sp. strain A03 is a protease-producing bacterium isolated from decomposing-penguin feathers collected in the Antarctic environment. This strain has the ability to degrade keratin at low temperatures. The A03 genome sequence provides the possibility of finding new genes with biotechnological potential to better understand its cold-adaptation mechanism and survival in cold environments. Copyright © 2015 Pereira et al.
Genomic V exons from whole genome shotgun data in reptiles.

Science.gov (United States)

Olivieri, D N; von Haeften, B; Sánchez-Espinel, C; Faro, J; Gambón-Deza, F

2014-08-01

Reptiles and mammals diverged over 300 million years ago, creating two parallel evolutionary lineages amongst terrestrial vertebrates. In reptiles, two main evolutionary lines emerged: one gave rise to Squamata, while the other gave rise to Testudines, Crocodylia, and Aves. In this study, we determined the genomic variable (V) exons from whole genome shotgun sequencing (WGS) data in reptiles corresponding to the three main immunoglobulin (IG) loci and the four main T cell receptor (TR) loci. We show that Squamata lack the TRG and TRD genes, and snakes lack the IGKV genes. In representative species of Testudines and Crocodylia, the seven major IG and TR loci are maintained. As in mammals, genes of the IG loci can be grouped into well-defined IMGT clans through a multi-species phylogenetic analysis. We show that the reptilian IGHV and IGLV genes are distributed amongst the established mammalian clans, while their IGKV genes are found within a single clan, nearly exclusive from the mammalian sequences. The reptilian and mammalian TRAV genes cluster into six common evolutionary clades (since IMGT clans have not been defined for TR). In contrast, the reptilian TRBV genes cluster into three clades, which have few mammalian members. In this locus, the V exon sequences from mammals appear to have undergone different evolutionary diversification processes that occurred outside these shared reptilian clans. These sequences can be obtained in a freely available public repository (http://vgenerepertoire.org).
Electromagnetic nondestructive evaluation of tempering process in AISI D2 tool steel

International Nuclear Information System (INIS)

Kahrobaee, Saeed; Kashefi, Mehrdad

2015-01-01

The present paper investigates the potential of using eddy current technique as a reliable nondestructive tool to detect microstructural changes during the different stages of tempering treatment in AISI D2 tool steel. Five stages occur in tempering of the steel: precipitation of ε carbides, formation of cementite, retained austenite decomposition, secondary hardening effect and spheroidization of carbides. These stages were characterized by destructive methods, including dilatometry, differential scanning calorimetry, X-ray diffraction, scanning electron microscopic observations, and hardness measurements. The microstructural changes alter the electrical resistivity/magnetic saturation, which, in turn, influence the eddy current signals. Two EC parameters, induced voltage sensed by pickup coil and impedance point detected by excitation coil, were evaluated as a function of tempering temperature to characterize the microstructural features, nondestructively. The study revealed that a good correlation exists between the EC parameters and the microstructural changes. - Highlights: • D2 steel parts were tempered at 200-650 °C to produce various microstructures. • Precipitation of ε and Fe 3 C carbides and spheroidization of carbides were detected. • Retained austenite decomposition and secondary hardening effect were determined. • Variations of electrical resistivity (ρ) and magnetic saturation (Bs) were studied. • Combined effects of ρ and Bs on the EC outputs were evaluated
Electromagnetic nondestructive evaluation of tempering process in AISI D2 tool steel

Energy Technology Data Exchange (ETDEWEB)

Kahrobaee, Saeed, E-mail: saeed.kahrobaee@yahoo.com; Kashefi, Mehrdad, E-mail: m-kashefi@um.ac.ir

2015-05-15

The present paper investigates the potential of using eddy current technique as a reliable nondestructive tool to detect microstructural changes during the different stages of tempering treatment in AISI D2 tool steel. Five stages occur in tempering of the steel: precipitation of ε carbides, formation of cementite, retained austenite decomposition, secondary hardening effect and spheroidization of carbides. These stages were characterized by destructive methods, including dilatometry, differential scanning calorimetry, X-ray diffraction, scanning electron microscopic observations, and hardness measurements. The microstructural changes alter the electrical resistivity/magnetic saturation, which, in turn, influence the eddy current signals. Two EC parameters, induced voltage sensed by pickup coil and impedance point detected by excitation coil, were evaluated as a function of tempering temperature to characterize the microstructural features, nondestructively. The study revealed that a good correlation exists between the EC parameters and the microstructural changes. - Highlights: • D2 steel parts were tempered at 200-650 °C to produce various microstructures. • Precipitation of ε and Fe{sub 3}C carbides and spheroidization of carbides were detected. • Retained austenite decomposition and secondary hardening effect were determined. • Variations of electrical resistivity (ρ) and magnetic saturation (Bs) were studied. • Combined effects of ρ and Bs on the EC outputs were evaluated.

Electromagnetic nondestructive evaluation of tempering process in AISI D2 tool steel

Science.gov (United States)

Kahrobaee, Saeed; Kashefi, Mehrdad

2015-05-01

The present paper investigates the potential of using eddy current technique as a reliable nondestructive tool to detect microstructural changes during the different stages of tempering treatment in AISI D2 tool steel. Five stages occur in tempering of the steel: precipitation of ɛ carbides, formation of cementite, retained austenite decomposition, secondary hardening effect and spheroidization of carbides. These stages were characterized by destructive methods, including dilatometry, differential scanning calorimetry, X-ray diffraction, scanning electron microscopic observations, and hardness measurements. The microstructural changes alter the electrical resistivity/magnetic saturation, which, in turn, influence the eddy current signals. Two EC parameters, induced voltage sensed by pickup coil and impedance point detected by excitation coil, were evaluated as a function of tempering temperature to characterize the microstructural features, nondestructively. The study revealed that a good correlation exists between the EC parameters and the microstructural changes.
Effect of microalloying elements on microstructure and properties of quenched and tempered constructional steel

Science.gov (United States)

Ma, Qingshen; Huang, Leqing; Di, Guobiao; Wang, Yanfeng; Yang, Yongda; Ma, Changwen

2017-09-01

The effects of microalloying elements Nb, V and Ti on microstructure and properties of quenched and tempered steel were studied. Results showed that the addition of microalloying elements led to the formation of bainite and increased strength, while the austenization and ferrite transformation temperature was barely affected, i.e. 10°C. Microalloying elements shortened the incubation time for bainite transformation by refinement of austenite grain, and decreased the hardenability by forming carbides and therefore reducing the carbon content of super-cooled austenite. Either of them promoted the bainite transformation. The better tempering stability was ascribed to the as hot-rolled bainite microstructure and secondary carbide precipitation during tempering.
46 CFR 54.25-25 - Welding of quenched and tempered steels (modifies UHT-82).

Science.gov (United States)

2010-10-01

... 46 Shipping 2 2010-10-01 2010-10-01 false Welding of quenched and tempered steels (modifies UHT-82... ENGINEERING PRESSURE VESSELS Construction With Carbon, Alloy, and Heat Treated Steels § 54.25-25 Welding of quenched and tempered steels (modifies UHT-82). (a) The qualification of welding procedures, welders, and...
Effect of microstructure on the susceptibility of a 533 steel to temper embrittlement

International Nuclear Information System (INIS)

Raoul, S.; Marini, B.; Pineau, A.

1998-01-01

In ferritic steels, brittle fracture usually occurs at low temperature by cleavage. However the segregation of impurities (P, As, Sn etc..) along prior γ grain boundaries can change the brittle fracture mode from transgranular to intergranular. In quenched and tempered steels, this segregation is associated with what is called the temper-embrittlement phenomenon. The main objective of the present study is to investigate the influence of the as-quenched microstructure (lower bainite or martensite) on the susceptibility of a low alloy steel (A533 cl.1) to temper-embrittlement. Dilatometric tests were performed to determine the continous-cooling-transformation (CCT) diagram of the material and to measure the critical cooling rate (V c ) for a martensitic quench. Then subsized Charpy V-notched specimens were given various cooling rates from the austenitization temperature to obtain a wide range of as-quenched microstructures, including martensite and bainite. These specimens were subsequently given a heat treatment to develop temper embrittlement and tested to measure the V-notch fracture toughness at -50 C. The fracture surfaces were examined by SEM. It is shown that martensitic microstructures are more susceptible to intergranular embrittlement than bainitic microstructures. These observed microstructural influences are briefly discussed. (orig.)
Comparative shotgun proteomic analysis of wild and domesticated Opuntia spp. species shows a metabolic adaptation through domestication.

Science.gov (United States)

Pichereaux, Carole; Hernández-Domínguez, Eric E; Santos-Diaz, Maria Del Socorro; Reyes-Agüero, Antonio; Astello-García, Marizel; Guéraud, Françoise; Negre-Salvayre, Anne; Schiltz, Odile; Rossignol, Michel; Barba de la Rosa, Ana Paulina

2016-06-30

The Opuntia genus is widely distributed in America, but the highest richness of wild species are found in Mexico, as well as the most domesticated Opuntia ficus-indica, which is the most domesticated species and an important crop in agricultural economies of arid and semiarid areas worldwide. During domestication process, the Opuntia morphological characteristics were favored, such as less and smaller spines in cladodes and less seeds in fruits, but changes at molecular level are almost unknown. To obtain more insights about the Opuntia molecular changes through domestication, a shotgun proteomic analysis and database-dependent searches by homology was carried out. >1000 protein species were identified and by using a label-free quantitation method, the Opuntia proteomes were compared in order to identify differentially accumulated proteins among wild and domesticated species. Most of the changes were observed in glucose, secondary, and 1C metabolism, which correlate with the observed protein, fiber and phenolic compounds accumulation in Opuntia cladodes. Regulatory proteins, ribosomal proteins, and proteins related with response to stress were also observed in differential accumulation. These results provide new valuable data that will help to the understanding of the molecular changes of Opuntia species through domestication. Opuntia species are well adapted to dry and warm conditions in arid and semiarid regions worldwide, and they are highly productive plants showing considerable promises as an alternative food source. However, there is a gap regarding Opuntia molecular mechanisms that enable them to grow in extreme environmental conditions and how the domestication processes has changed them. In the present study, a shotgun analysis was carried out to characterize the proteomes of five Opuntia species selected by its domestication degree. Our results will help to a better understanding of proteomic features underlying the selection and specialization under
Using Ecophysiology to Improve Farm Efficiency: Application in Temperate Dairy Grazing Systems

Directory of Open Access Journals (Sweden)

David F. Chapman

2016-04-01

Full Text Available Information on the physiological ecology of grass-dominant pastures has made a substantial contribution to the development of practices that optimise the amount of feed harvested by grazing animals in temperate livestock systems. However, the contribution of ecophysiology is often under-stated, and the need for further research in this field is sometimes questioned. The challenge for ecophysiolgists, therefore, is to demonstrate how ecophysiological knowledge can help solve significant problems looming for grassland farming in temperate regions while also removing constraints to improved productivity from grazed pastures. To do this, ecophysiological research needs to align more closely with related disciplines, particularly genetics/genomics, agronomy, and farming systems, including systems modelling. This review considers how ecophysiological information has contributed to the development of grazing management practices in the New Zealand dairy industry, an industry that is generally regarded as a world leader in the efficiency with which pasture is grown and utilised for animal production. Even so, there are clear opportunities for further gains in pasture utilisation through the refinement of grazing management practices and the harnessing of those practices to improved pasture plant cultivars with phenotypes that facilitate greater grazing efficiency. Meanwhile, sub-optimal persistence of new pastures continues to constrain productivity in some environments. The underlying plant and population processes associated with this have not been clearly defined. Ecophysiological information, placed in the context of trait identification, grounded in well-designed agronomic studies and linked to plant improvements programmes, is required to address this.
In Situ Study of Phase Transformations during Non-Isothermal Tempering of Bainitic and Martensitic Microstructures

Directory of Open Access Journals (Sweden)

S. Hesamodin Talebi

2017-09-01

Full Text Available Phase transformations during non-isothermal tempering of bainitic or martensitic microstructures obtained after quenching of a medium-carbon low-alloy steel was studied. The microstructures correspond to different locations of an as-quenched large-sized forged ingot used as a die material in the automotive industry. High-resolution dilatometry experiments were conducted to simulate the heat treatment process, as well as to investigate different phenomena occurring during non-isothermal tempering. The microstructures were characterized using optical and scanning electron microscopy. Dilatometry analyses demonstrated that tempering behavior varied significantly from bainitic to martensitic microstructures. Retained austenite, which exists between bainitic ferrite sheaves, decomposes to lower bainite causing a remarkable volume increase. It was found that this decomposition finishes below 386 °C. By contrast, martensite tempering was accompanied with a volume decrease due to the decomposition of medium-carbon martensite to low carbon martensite and carbides.
Application of whole genome shotgun sequencing for detection and characterization of genetically modified organisms and derived products.

Science.gov (United States)

Holst-Jensen, Arne; Spilsberg, Bjørn; Arulandhu, Alfred J; Kok, Esther; Shi, Jianxin; Zel, Jana

2016-07-01

The emergence of high-throughput, massive or next-generation sequencing technologies has created a completely new foundation for molecular analyses. Various selective enrichment processes are commonly applied to facilitate detection of predefined (known) targets. Such approaches, however, inevitably introduce a bias and are prone to miss unknown targets. Here we review the application of high-throughput sequencing technologies and the preparation of fit-for-purpose whole genome shotgun sequencing libraries for the detection and characterization of genetically modified and derived products. The potential impact of these new sequencing technologies for the characterization, breeding selection, risk assessment, and traceability of genetically modified organisms and genetically modified products is yet to be fully acknowledged. The published literature is reviewed, and the prospects for future developments and use of the new sequencing technologies for these purposes are discussed.
Effects of contrasting omnivorous fish on submerged macrophyte biomass in temperate lakes: a mesocosm experiment

NARCIS (Netherlands)

Dorenbosch, M.; Bakker, E.S.

2012-01-01

1.Freshwater fish can affect aquatic vegetation directly by consuming macrophytes or indirectly by changing water quality. However, most fish in the temperate climate zone have an omnivorous diet. The impact of fish as aquatic herbivores in temperate climates therefore remains unclear and depends on
Appropriate welding conditions of temper bead weld repair for SQV2A pressure vessel steel

International Nuclear Information System (INIS)

Mizuno, R.; Matsuda, F.; Brziak, P.; Lomozik, M.

2004-01-01

Temper bead welding technique is one of the most important repair welding methods for large structures for which it is difficult to perform the specified post weld heat treatment. In this study, appropriate temper bead welding conditions to improve the characteristics of heat affected zone (HAZ) are studied using pressure vessel steel SQV2A corresponding to ASTM A533 Type B Class 1. Thermal/mechanical simulator is employed to give specimens welding thermal cycles from single to quadruple cycle. Charpy absorbed energy and hardness of simulated CGHAZ by first cycle were degraded as compared with base metal. Improvability of these degradations by subsequent cycles is discussed and appropriate temper bead thermal cycles are clarified. When the peak temperature lower than Ac1 and near Ac1 in the second thermal cycle is applied to CGAHZ by first thermal cycle, the characteristics of CGHAZ improve enough. When the other peak temperatures (that is, higher than Ac1) in the second thermal cycle are applied to the CGHAZ, third or more thermal cycle temper bead process should be applied to improve the properties. Appropriate weld condition ranges are selected based on the above results. The validity of the selected ranges is verified by the temper bead welding test. (orig.)
Joint measurement of risk aversion, prudence, and temperance

NARCIS (Netherlands)

Ebert, S.; Wiesen, D.

Risk aversion—but also the higher-order risk preferences of prudence and temperance—are fundamental concepts in the study of economic decision making. We propose a method to jointly measure the intensity of risk aversion, prudence, and temperance. Our theoretical approach is to define risk
Effect of climate change on temperate forest ecosystems

NARCIS (Netherlands)

Brolsma, R.J.

2010-01-01

In temperate climates groundwater can have a strong effect on vegetation, because it can influence the spatio-temporal distribution of soil moisture and therefore water and oxygen stress of vegetation. Current IPCC climate projections based on CO2 emission scenarios show a global temperature rise
Proteomic analysis of protein interactions between Eimeria maxima sporozoites and chicken jejunal epithelial cells by shotgun LC-MS/MS.

Science.gov (United States)

Huang, Jingwei; Liu, Tingqi; Li, Ke; Song, Xiaokai; Yan, Ruofeng; Xu, Lixin; Li, Xiangrui

2018-04-04

Eimeria maxima initiates infection by invading the jejunal epithelial cells of chicken. However, the proteins involved in invasion remain unknown. The research of the molecules that participate in the interactions between E. maxima sporozoites and host target cells will fill a gap in our understanding of the invasion system of this parasitic pathogen. In the present study, chicken jejunal epithelial cells were isolated and cultured in vitro. Western blot was employed to analyze the soluble proteins of E. maxima sporozoites that bound to chicken jejunal epithelial cells. Co-immunoprecipitation (co-IP) assay was used to separate the E. maxima proteins that bound to chicken jejunal epithelial cells. Shotgun LC-MS/MS technique was used for proteomics identification and Gene Ontology was employed for the bioinformatics analysis. The results of Western blot analysis showed that four proteins bands from jejunal epithelial cells co-cultured with soluble proteins of E. maxima sporozoites were recognized by the positive sera, with molecular weights of 70, 90, 95 and 130 kDa. The co-IP dilutions were analyzed by shotgun LC-MS/MS. A total of 204 proteins were identified in the E. maxima protein database using the MASCOT search engine. Thirty-five proteins including microneme protein 3 and 7 had more than two unique peptide counts and were annotated using Gene Ontology for molecular function, biological process and cellular localization. The results revealed that of the 35 annotated peptides, 22 (62.86%) were associated with binding activity and 15 (42.86%) were involved in catalytic activity. Our findings provide an insight into the interaction between E. maxima and the corresponding host cells and it is important for the understanding of molecular mechanisms underlying E. maxima invasion.
Reversible temper brittleness on tensile tests at room temperature

International Nuclear Information System (INIS)

Quadros, N.F. de; Cabral, U.Q.

1976-01-01

Tensile tests were carried out on unnotched test pieces at room temperature and three strain rates: 2,5x10 -4 , 2,5x10 -3 and 1,0x10 -2 s -1 in a low alloy No-Cr-Mo steel to observe the variation in its mechanical properties with the occurrence of reversible temper brittleness. The brittle samples showed a sensitivity of 50 0 C in a 48 hour heat treatment at 500 0 C. The tests showed that at the strain rate of 2,5x10 -4 s -1 there are statistically significant differences between the elongations of the material in the brittle and the nonbrittle and regenerated states. A short review of reversible temper brittleness is given and a theory suggested for the mechanism [pt
Time-scales of hydrological forcing on the geochemistry and bacterial community structure of temperate peat soils

Science.gov (United States)

Nunes, Flavia L. D.; Aquilina, Luc; De Ridder, Jo; Francez, André-Jean; Quaiser, Achim; Caudal, Jean-Pierre; Vandenkoornhuyse, Philippe; Dufresne, Alexis

2015-10-01

Peatlands are an important global carbon reservoir. The continued accumulation of carbon in peatlands depends on the persistence of anoxic conditions, in part induced by water saturation, which prevents oxidation of organic matter, and slows down decomposition. Here we investigate how and over what time scales the hydrological regime impacts the geochemistry and the bacterial community structure of temperate peat soils. Peat cores from two sites having contrasting groundwater budgets were subjected to four controlled drought-rewetting cycles. Pore water geochemistry and metagenomic profiling of bacterial communities showed that frequent water table drawdown induced lower concentrations of dissolved carbon, higher concentrations of sulfate and iron and reduced bacterial richness and diversity in the peat soil and water. Short-term drought cycles (3-9 day frequency) resulted in different communities from continuously saturated environments. Furthermore, the site that has more frequently experienced water table drawdown during the last two decades presented the most striking shifts in bacterial community structure, altering biogeochemical functioning of peat soils. Our results suggest that the increase in frequency and duration of drought conditions under changing climatic conditions or water resource use can induce profound changes in bacterial communities, with potentially severe consequences for carbon storage in temperate peatlands.
Groundwater flow modelling of periods with temperate climate conditions - Laxemar

International Nuclear Information System (INIS)

Joyce, Steven; Simpson, Trevor; Hartley, Lee; Applegate, David; Hoek, Jaap; Jackson, Peter; Roberts, David; Swan, David; Gylling, Bjoern; Marsic, Niko; Rhen, Ingvar

2010-12-01

As a part of the license application for a final repository for spent nuclear fuel at Forsmark, the Swedish Nuclear Fuel and Waste Management Company (SKB) has undertaken a series of groundwater flow modelling studies. These represent time periods with different hydraulic conditions and the simulations carried out contribute to the overall evaluation of the repository design and long-term radiological safety. This report concerns the modelling of a repository at the Laxemar-Simpevarp site during temperate climate conditions as a comparison to corresponding modelling carried out for Forsmark /Joyce et al. 2010/. The collation and implementation of onsite hydrogeological and hydrogeochemical data from previous reports are used in the construction of a Hydrogeological base case (reference case conceptualisation) and then an examination of various areas of uncertainty within the current understanding by a series of model variants. The Hydrogeological base case models at three different scales, 'repository', 'site' and 'regional' make use of a discrete fracture network (DFN) and equivalent continuous porous medium (ECPM) models. The use of hydrogeological models allow for the investigation of the groundwater flow from a deep disposal facility to the biosphere and for the calculation of performance measures that will provide an input to the site performance assessment. The focus of the study described in this report has been to perform numerical simulations of the hydrogeological system from post-closure and throughout the temperate period up until the receding shoreline leaves the modelling domain at around 15,000 AD. Besides providing quantitative results for the immediate temperate period following post-closure, these results are also intended to give a qualitative indication of the evolution of the groundwater system during future temperate periods within an ongoing cycle of glacial/inter-glacial events
Groundwater flow modelling of periods with temperate climate conditions - Laxemar

Energy Technology Data Exchange (ETDEWEB)

Joyce, Steven; Simpson, Trevor; Hartley, Lee; Applegate, David; Hoek, Jaap; Jackson, Peter; Roberts, David; Swan, David (Serco Technical Consulting Services (United Kingdom)); Gylling, Bjoern; Marsic, Niko (Kemakta Konsult AB, Stockholm (Sweden)); Rhen, Ingvar (SWECO Environment AB, Falun (Sweden))

2010-12-15

As a part of the license application for a final repository for spent nuclear fuel at Forsmark, the Swedish Nuclear Fuel and Waste Management Company (SKB) has undertaken a series of groundwater flow modelling studies. These represent time periods with different hydraulic conditions and the simulations carried out contribute to the overall evaluation of the repository design and long-term radiological safety. This report concerns the modelling of a repository at the Laxemar-Simpevarp site during temperate climate conditions as a comparison to corresponding modelling carried out for Forsmark /Joyce et al. 2010/. The collation and implementation of onsite hydrogeological and hydrogeochemical data from previous reports are used in the construction of a Hydrogeological base case (reference case conceptualisation) and then an examination of various areas of uncertainty within the current understanding by a series of model variants. The Hydrogeological base case models at three different scales, 'repository', 'site' and 'regional' make use of a discrete fracture network (DFN) and equivalent continuous porous medium (ECPM) models. The use of hydrogeological models allow for the investigation of the groundwater flow from a deep disposal facility to the biosphere and for the calculation of performance measures that will provide an input to the site performance assessment. The focus of the study described in this report has been to perform numerical simulations of the hydrogeological system from post-closure and throughout the temperate period up until the receding shoreline leaves the modelling domain at around 15,000 AD. Besides providing quantitative results for the immediate temperate period following post-closure, these results are also intended to give a qualitative indication of the evolution of the groundwater system during future temperate periods within an ongoing cycle of glacial/inter-glacial events
Index for characterizing post-fire soil environments in temperate coniferous forests

Science.gov (United States)

Jain, Theresa B.; Pilliod, David S.; Graham, Russell T.; Lentile, Leigh B.; Sandquist, Jonathan E.

2012-01-01

Many scientists and managers have an interest in describing the environment following a fire to understand the effects on soil productivity, vegetation growth, and wildlife habitat, but little research has focused on the scientific rationale for classifying the post-fire environment. We developed an empirically-grounded soil post-fire index (PFI) based on available science and ecological thresholds. Using over 50 literature sources, we identified a minimum of five broad categories of post-fire outcomes: (a) unburned, (b) abundant surface organic matter ( > 85% surface organic matter), (c) moderate amount of surface organic matter ( ≥ 40 through 85%), (d) small amounts of surface organic matter ( communication of potential responses or outcomes (e.g., erosion potential) from fires of varying severities.
The effect of tempering on mechanical properties of 50Mn18Cr4WN retaining ring material

International Nuclear Information System (INIS)

Sun, M.C.; Guo, C.H.; Zheng, Z.Z.; Ma, Z.M.

1990-01-01

50Mn18Cr4WN is a retaining ring steel. It is strengthened by solution heat treatment and cold working. The process produces high macro residual stress. The retaining ring must be tempered for stress-relief. When the ring is sleeved, it is heated too. If the retaining ring is tempered, are the mechanical properties of the retaining ring damaged? The problem is described in the article. The tempering of testing pieces was carried out at several temperatures: 350degC, 400degC, 450degC, 500degC and 650degC. The tempering time was 3h. The yield point, tensile strength, elongation and reduction of area were determined by means of the tensile test. In the results, for temperatures between 350degC and 450degC, the yield point, tensile strength, elongation and reduction of area did not change notably. A stress corrosion cracking test was also carried out in a 3%Ni 4 NO 3 , 36%Ca(NO 3 ) 2 aqueous solution. K 1scc values after tempering at 450degC and without tempering were measured. The results showed that the K 1scc after tempering at 450degC decreased notably. Micrographs show that carbo-nitride precipitated. The precipitated carbo-nitride particles increased in size at the grain boundaries. The precipitated carbonitride particles increased in number at slip lines. It is clear that the precipitated particles lead to the increase of micro-cells and the micro-cells aggravated the stress corrosion cracking process. (orig.)
Diagenesis of polymineralic temperate limestones in a cyclothemic sedimentary succession, eastern North Island, New Zealand

International Nuclear Information System (INIS)

Haywick, D.W.

2004-01-01

Temperate carbonate petrofacies (calcarenite and coquina) in the Pliocene-Pleistocene Petane Group of eastern North Island, New Zealand, are dominated by aragonite faunas consisting primarily of bivalves and gastropods. Unlike calcite-dominated temperate limestones, these polymineralic carbonates have undergone extensive early diagenetic alteration including extensive calcite cementation induced by aragonite dissolution. Marine cementation (type 1: pore-lining, bladed calcite) was isolated to biogenic pores. It predated glauconite and may have been precipitated as low-magnesium calcite, possibly in marine phreatic environments during sea-level transgressions. Four phases of calcite cement with varying but definitive degrees of meteoric influence occur in the Petane Group. Type 2 (ferroan scalenohedral calcite) was the initial pore-filling cement and precipitated from reduced pore fluids in a phreatic environment, possibly during or soon after the transition from marine to meteoric diagenesis. Type 3 (moderately ferroan drusy) calcite and type 4 (non-ferroan drusy) calcite were sequentially precipitated during meteoric conditions from pore waters that changed from reducing to oxidising. Type 5 (sinter) cements comprise several forms precipitated during vadose meteoric diagenesis, the final meteoric phase of alteration in the Petane Group. Ferroan calcite cementation of silt matrix in coquina limestones overlain by terrigenous silt (type 6: matrix cement) probably occurred simultaneously with type 2/3 pore-filling phases. A similar ferroan to moderately ferroan to non-ferroan suite of drusy calcite cements also lithified concretions in non-carbonate (siliciclastic sand) facies in the Petane Group, but only after the onset of compaction. Extensive skeletal diagenesis (stabilisation of magnesium calcite allochems, dissolution/recrystallisation of aragonite) occurred during type 3 and 4 cementation phases. Diagenesis in the Petane Group was stratigraphically influenced

Effect of land use change on methane oxidation in temperate forest and grassland soils

Energy Technology Data Exchange (ETDEWEB)

Ojima, D.S.; Valentine, D.W.; Mosier, A.R.; Parton, W.J.; Schimel, D.S. (Colorado State University, Fort Collins, CO (USA). Natural Resources Ecology Lab.)

Evidence is accumulating that land use changes and other human activity during the past 100 to 200 years have contributed to decreased CH[sub 4] oxidation in the soil. Increased N additions to temperate forest soils in the northeastern United States decreased CH[sub 4] uptake by 30 to 60%, and increased N fertilization and conversion to cropland in temperate grasslands decreased CH[sub 4] uptake by 30 to 75%. Using these data, a series of calculations were made to estimate the impact of land use and management changes which have altered soil, the CH[sub 4] sink in temperate forest and grassland ecosystems. As the atmospheric mixing ratio of CH[sub 4] has increased during the past 150 y, the temperate CH[sub 4] sink has risen from approximately 8 Tg y[sup -1] to 27 Tg y[sup -1], assuming no loss of land cover to cropland conversion. The net effect of intensive land cover changes and extensive chronic disturbance (i.e., increased atmospheric N deposition) to these ecosystems have resulted in about 30% reduction in the CH[sub 4] budget even more as atmospheric CH[sub 4] concentrations increase and as a result of further disturbance to other biomes. Without accounting for this approximately 20 Tg y[sup -1] temperate soil sink, the atmospheric CH[sub 4] concentration would be increasing about 1.5 times the current rate. 39 refs., 2 figs., 1 tab.
Microstructural characteristics of steel rebar submitted to the process of self - tempering

International Nuclear Information System (INIS)

Barreto, M.F.O.

2014-01-01

Every day the construction industry seeks new alternatives to maximize use of the materials provided new tools for structural design of the new techniques in welding rods. In this sense, this work proposes to study the mechanical properties of steel rebar self-tempering for civil construction, choosing the bars from 6.3 to 25.4 mm in diameter for the study. The cooling process of rebar, after rolling, known as self-tempering produces a rebar with excellent mechanical properties and low cost to the plant, they put the rebar shall be composed of concentric layers with different mechanical properties among themselves. To study the influence of these layers on the mechanical behavior of rebar microstructural characterization was made by means of electron microscopy analysis of transmitted light and scanning of all samples. From the results it was found that only the bars 20 and 25mm diameter had a heat treatment for self-tempering relevant. (author)
Overlapping phase transformations on tempering of a low-alloy steel

International Nuclear Information System (INIS)

Valencia Morales, E; Galeano Alvarez, N.J; Vega Leiva, J; Castellanos L M; Villar C E; Antiquera Munoz J; Hernandez R J

2006-01-01

The kinetics of precipitation of the primary and independent carbides during tempering of a low-alloy steel are characterized by the application of the Kinetic Theory of the Overlapping Phase Transformations(KTOPT). It is based on the Avrami model and considers two simultaneous precipitation processes. The present set-up allows us to calculate the exponent of the Avrami equation for simultaneous reactions at different rates. Only the dilatometry curves on tempering are required. According to this new formulation, the treatment of the dilatometry records showed different mechanisms of nucleation and growth of the primary and independent carbides. These results are in agreement with the thin foil electron micrographs and hardness tests of the thermally treated samples (au)
Tempering Behavior of TiC-Reinforced SKD11 Steel Matrix Composite

Science.gov (United States)

Hwang, Ji-In; Kim, Seong Hoon; Heo, Yoon-Uk; Kim, Dae Ha; Hwang, Keum-Cheol; Suh, Dong-Woo

2018-03-01

TiC-reinforced SKD11 steel matrix composite, fabricated by a pressure infiltration casting, undergoes monotonic decrease in hardness as tempering temperature increases. Element mappings by TEM-EDS and thermodynamic calculation indicate that remarkable redistribution of V between the reinforcement and the steel matrix occurs by partial dissolution and re-precipitation of MC carbides upon casting process. The absence of secondary hardening is led by the enrichment of V in the reinforcement that reduces the V content in the steel matrix; this reduction in V content makes the precipitation of fine VC sluggish during the tempering.
X-ray residual stress analysis on machined and tempered HPSN-ceramics

Energy Technology Data Exchange (ETDEWEB)

Immelmann, S.; Welle, E.; Reimers, W. [Hahn-Meitner-Institut Berlin GmbH (Germany)

1997-11-15

The residual stress state induced by grinding and tempering of hot pressed silicon nitride (HPSN) samples is studied by X-ray diffraction. The results reveal that the residual stress values at the surface of the samples as well as their gradient within the penetration depth of the X-rays depend on the sintering aid and thus, on the glassy phase content of the HPSN. Tempering of the ground HPSN reduces the residual stress values due to microplastic deformation, whereas an oxidation of the glassy phase leads to the formation of compressive residual stresses. (orig.) 35 refs.
Bifurcation dynamics of the tempered fractional Langevin equation

Energy Technology Data Exchange (ETDEWEB)

Zeng, Caibin, E-mail: macbzeng@scut.edu.cn; Yang, Qigui, E-mail: qgyang@scut.edu.cn [School of Mathematics, South China University of Technology, Guangzhou 510640 (China); Chen, YangQuan, E-mail: ychen53@ucmerced.edu [MESA LAB, School of Engineering, University of California, Merced, 5200 N. Lake Road, Merced, California 95343 (United States)

2016-08-15

Tempered fractional processes offer a useful extension for turbulence to include low frequencies. In this paper, we investigate the stochastic phenomenological bifurcation, or stochastic P-bifurcation, of the Langevin equation perturbed by tempered fractional Brownian motion. However, most standard tools from the well-studied framework of random dynamical systems cannot be applied to systems driven by non-Markovian noise, so it is desirable to construct possible approaches in a non-Markovian framework. We first derive the spectral density function of the considered system based on the generalized Parseval's formula and the Wiener-Khinchin theorem. Then we show that it enjoys interesting and diverse bifurcation phenomena exchanging between or among explosive-like, unimodal, and bimodal kurtosis. Therefore, our procedures in this paper are not merely comparable in scope to the existing theory of Markovian systems but also provide a possible approach to discern P-bifurcation dynamics in the non-Markovian settings.
Effect of microstructure on the susceptibility of a 533 steel to temper embrittlement

Energy Technology Data Exchange (ETDEWEB)

Raoul, S.; Marini, B. [CEA Centre d`Etudes Nucleaires de Saclay, 91 - Gif-sur-Yvette (France). Service de Recherches Metallurgiques Appliquees; Pineau, A. [CNRS, Evry (France). Centre de Materiaux

1998-11-01

In ferritic steels, brittle fracture usually occurs at low temperature by cleavage. However the segregation of impurities (P, As, Sn etc..) along prior {gamma} grain boundaries can change the brittle fracture mode from transgranular to intergranular. In quenched and tempered steels, this segregation is associated with what is called the temper-embrittlement phenomenon. The main objective of the present study is to investigate the influence of the as-quenched microstructure (lower bainite or martensite) on the susceptibility of a low alloy steel (A533 cl.1) to temper-embrittlement. Dilatometric tests were performed to determine the continous-cooling-transformation (CCT) diagram of the material and to measure the critical cooling rate (V{sub c}) for a martensitic quench. Then subsized Charpy V-notched specimens were given various cooling rates from the austenitization temperature to obtain a wide range of as-quenched microstructures, including martensite and bainite. These specimens were subsequently given a heat treatment to develop temper embrittlement and tested to measure the V-notch fracture toughness at -50 C. The fracture surfaces were examined by SEM. It is shown that martensitic microstructures are more susceptible to intergranular embrittlement than bainitic microstructures. These observed microstructural influences are briefly discussed. (orig.) 11 refs.
Plasmodium vivax populations revisited: mitochondrial genomes of temperate strains in Asia suggest ancient population expansion

Directory of Open Access Journals (Sweden)

Miao Miao

2012-02-01

Full Text Available Abstract Background Plasmodium vivax is the most widely distributed human malaria parasite outside of Africa, and its range extends well into the temperate zones. Previous studies provided evidence for vivax population differentiation, but temperate vivax parasites were not well represented in these analyses. Here we address this deficit by using complete mitochondrial (mt genome sequences to elucidate the broad genetic diversity and population structure of P. vivax from temperate regions in East and Southeast Asia. Results From the complete mtDNA sequences of 99 clinical samples collected in China, Myanmar and Korea, a total of 30 different haplotypes were identified from 26 polymorphic sites. Significant differentiation between different East and Southeast Asian parasite populations was observed except for the comparison between populations from Korea and southern China. Haplotype patterns and structure diversity analysis showed coexistence of two different groups in East Asia, which were genetically related to the Southeast Asian population and Myanmar population, respectively. The demographic history of P. vivax, examined using neutrality tests and mismatch distribution analyses, revealed population expansion events across the entire P. vivax range and the Myanmar population. Bayesian skyline analysis further supported the occurrence of ancient P. vivax population expansion. Conclusions This study provided further resolution of the population structure and evolution of P. vivax, especially in temperate/warm-temperate endemic areas of Asia. The results revealed divergence of the P. vivax populations in temperate regions of China and Korea from other populations. Multiple analyses confirmed ancient population expansion of this parasite. The extensive genetic diversity of the P. vivax populations is consistent with phenotypic plasticity of the parasites, which has implications for malaria control.
Resonant behavior of the generalized Langevin system with tempered Mittag–Leffler memory kernel

Science.gov (United States)

Chen, Yao; Wang, Xudong; Deng, Weihua

2018-05-01

The generalized Langevin equation describes anomalous dynamics. Noise is not only the origin of uncertainty but also plays a positive role in helping to detect signals with information, termed stochastic resonance (SR). This paper analyzes the anomalous resonant behaviors of the generalized Langevin system with a multiplicative dichotomous noise and an internal tempered Mittag–Leffler noise. For a system with a fluctuating harmonic potential, we obtain the exact expressions of several types of SR such as the first moment, the amplitude and autocorrelation function for the output signal as well as the signal–noise ratio. We analyze the influence of the tempering parameter and memory exponent on the bona fide SR and the general SR. Moreover, it is detected that the critical memory exponent changes regularly with the increase of the tempering parameter. Almost all the theoretical results are validated by numerical simulations.
Survival rates of birds of tropical and temperate forests: will the dogma survive?

Science.gov (United States)

Karr, J.R.; Nichols, J.D.; Klimkiewicz, M.K.; Brawn, J.D.

1990-01-01

Survival rates of tropical forest birds are widely assumed to be high relative to the survival rates of temperate forest birds. Much life-history theory is based on this assumption despite the lack of empirical data to support it. We provide the first detailed comparison of survival rates of tropical and temperate forest birds based on extensive data bases and modern capture-recapture models. We find no support for the conventional wisdom. Because clutch size is only one component of reproductive rate, the frequently assumed, simple association between clutch size and adult survival rates should not necessarily be expected. Our results emphasize the need to consider components of fecundity in addition to clutch size when comparing the life histories of tropical and temperate birds and suggest similar considerations in the development of vertebrate life-history theory.
T6 and T78 tempers of AA6065 alloy: a quantitative TEM study

Energy Technology Data Exchange (ETDEWEB)

Tanaka, M.; Warner, T. [Compagnie de Produits Chimiques et Electrometallurgiques Pechiney, Centre de Recherches de Voreppe, 38 (France)

2000-07-01

Quantitative transmission electron microscopy is used to characterize the microstructure of an industrial Al-Mg-Si-Cu alloy (AA6056) in a state (T78 temper) desensitized to intergranular corrosion in comparison with the peak aged state (T6 temper). Analysis of dark-field images and of zero-loss filtered selected-area-diffraction patterns, along with EDX spectroscopy, indicates an advanced precipitation of the quaternary phase containing Si and Cu in the T78-tempered alloy compared to the T6 one. This supports the current theory of the desensitization of AA6056 alloy. However, the application of EDX analysis to provide direct evidence of the chemical composition variation in the solid solution across the grain boundary appears less satisfactory. (orig.)
Effect of twice quenching and tempering on the mechanical properties and microstructures of SCRAM steel for fusion application

Energy Technology Data Exchange (ETDEWEB)

Xiong Xuesong; Yang Feng; Zou Xingrong [State Key Laboratory of Mould Technology, Institute of Materials Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074 (China); Suo Jinping, E-mail: jpsuo@yahoo.com.cn [State Key Laboratory of Mould Technology, Institute of Materials Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074 (China)

2012-11-15

The effect of twice quenching and tempering on the mechanical properties and microstructures of SCRAM steel was investigated. The results from tensile tests showed that whether twice quenching and tempering processes(1253 K/0.5 h/W.C(water cool) + 1033 K/2 h/A.C(air cool) + 1233 K/0.5 h/W.C + 1033 K/2 h/A.C named after 2Q and 2TI, and 1253 K/0.5 h/W.C + 1033 K/2 h/A.C + 1233 K/0.5 h/W.C + 1013 K/2 h/A.C named after 2Q and 2TII)increased strength of steel or not depended largely on the second tempering temperature compared to quenching and tempering process(1253 K/0.5 h/W.C + 1033 K/2 h/A.C named after 1Q and 1T). Charpy V-notch impact tests indicated that twice quenching and tempering processes reduced the ductile brittle transition temperature (DBTT). Microstructure inspection revealed that the prior austenitic grain size and martensite lath width were refined after twice quenching and tempering treatments. Precipitate growth was inhibited by a slight decrease of the second tempering temperature from 1033 to 1013 K. The finer average size of precipitates is considered to be the main possible reason for the higher strength and lower DBTT of 2Q and 2TII compared with 2Q and 2TI.
Phase structures and morphologies of tempered CA6NM stainless steel welded by hybrid laser-arc process

Energy Technology Data Exchange (ETDEWEB)

Mirakhorli, F., E-mail: Fatemeh.mirakhorli.1@ens.etsmtl.ca [École de Technologie Supérieure, Montréal, Québec H3C 1K3 (Canada); National Research Council Canada – Aerospace, Montréal, Québec H3T 2B2 (Canada); Cao, X., E-mail: Xinjin.cao@cnrc-nrc.gc.ca [National Research Council Canada – Aerospace, Montréal, Québec H3T 2B2 (Canada); Pham, X-T., E-mail: Tan.pham@etsmtl.ca [École de Technologie Supérieure, Montréal, Québec H3C 1K3 (Canada); Wanjara, P., E-mail: Priti.wanjara@cnrc-nrc.gc.ca [National Research Council Canada – Aerospace, Montréal, Québec H3T 2B2 (Canada); Fihey, J.L., E-mail: jean-luc.fihey@etsmtl.ca [École de Technologie Supérieure, Montréal, Québec H3C 1K3 (Canada)

2017-01-15

The post-weld tempered microstructure of hybrid laser-arc welded CA6NM, a cast low carbon martensitic stainless steel, was investigated. The microstructural evolutions from the fusion zone to the base metal were characterized in detail using optical microscopy, scanning electron microscopy (SEM), electron backscatter diffraction (EBSD), X-ray diffraction (XRD) and microhardness techniques. The fusion zone, in its post-weld tempered condition, consisted of tempered lath martensite, residual delta-ferrite with various morphologies, reversed austenite and chromium carbides. The reversed austenite, which can be detected through both EBSD and XRD techniques, was found to be finely dispersed along the martensite lath boundaries, particularly at triple junctions. Based on the EBSD analysis, the orientation relationship between the reversed austenite and the adjacent martensite laths seemed to follow the Kurdjumov-Sachs (K-S) model. The results also revealed the presence of the reversed austenite in the different regions of the heat affected zone after post-weld tempering. The microindentation hardness distribution was measured, and correlated to the evolution of the corresponding microstructure across the welds. - Highlights: •The EBSD analysis was performed on hybrid laser-arc welded CA6NM. •The FZ consisted of tempered lath martensite, reversed austenite, carbides and δ ferrite after tempering. •The reversed γ was formed along the α′ lath boundaries, particularly at triple junctions.
Variations in the microstructure and properties of Mn-Ti multiple-phase steel with high strength under different tempering temperatures

Science.gov (United States)

Li, Dazhao; Li, Xiaonan; Cui, Tianxie; Li, Jianmin; Wang, Yutian; Fu, Peimao

2015-03-01

There are few relevant researches on coils by tempering, and the variations of microstructure and properties of steel coil during the tempering process also remain unclear. By using thermo-mechanical control process(TMCP) technology, Mn-Ti typical HSLA steel coils with yield strength of 920 MPa are produced on the 2250 hot rolling production line. Then, the samples are taken from the coils and tempered at the temperatures of 220 °C, 350 °C, and 620 °C respectively. After tempering the strength, ductility and toughness of samples are tested, and meanwhile microstructures are investigated. Precipitates initially emerge inside the ferrite laths and the density of the dislocation drops. Then, the lath-shaped ferrites begin to gather, and the retained austenite films start to decompose. Finally, the retained austenite films are completely decomposed into coarse and short rod-shape precipitates composed of C and Ti compounds. The yield strength increases with increasing tempering temperature due to the pinning effect of the precipitates, and the dislocation density decreases. The yield strength is highest when the steel is tempered at 220 °C because of pinning of the precipitates to dislocations. The total elongation increases in all samples because of the development of ferrites during tempering. The tensile strength and impact absorbed energy decline because the effect of impeding crack propagation weakens as the retained austenite films completely decompose and the precipitates coarsen. This paper clarifies the influence of different tempering temperatures on phase transformation characteristics and process of Mn-Ti typical multiphase steels, as well as its resulting performance variation rules.
Greenhouse Gas Emission from Beef Cattle Grazing Systems on Temperate Grasslands

Science.gov (United States)

Rice, C. W.; Rivera-Zayas, J.

2017-12-01

At a global scale, cattle production is responsible for 65% of GHG emissions. During 2014 cattle management was the largest emitters of methane (CH4) representing a 23.2% of the total CH4 from anthropogenic activities. Since 2014, gas samples have been gathered and analyzed for carbon dioxide (CO2), CH4 and nitrous oxide (N2O) from three grazing areas under three different burning regimes at the temperate grassland of Konza Prairie Biological Station in Kansas. Burning regimes included one site in annually burned, and two sites with patch burned every three years on offset years. Burning regimes showed no effect in N2O emissions (pconsumed on grazed grassland soils; with an increase in consumption with patch burning. Results quantify the role of temperate grasslands as a sink of CH4, and a possible sink of N2O. This experiment evidence CO2, CH4 and N2O emissions behavior as a consequence of burning regimes, and quantify the role of temperate grasslands as a sink of CH4 and N2O in order to understand best practice for resilience of beef cattle management.
Influence of precipitation behavior on mechanical properties and hydrogen induced cracking during tempering of hot-rolled API steel for tubing

Energy Technology Data Exchange (ETDEWEB)

Moon, Joonoh, E-mail: mjo99@kims.re.kr [Ferrous Alloy Department, Advanced Metallic Materials Division, Korea Institute of Materials Science, 797 Changwondae-ro, Seongsan-gu, Changwon, Gyeongnam 642-831 (Korea, Republic of); Choi, Jongmin; Han, Seong-Kyung; Huh, Sungyul; Kim, Seong-Ju [Sheet Products Design Team, Technical Research Center, Hyundai Steel Company, 1480 Bukbusaneop-ro, Dangjin, Chungnam 343-823 (Korea, Republic of); Lee, Chang-Hoon; Lee, Tae-Ho [Ferrous Alloy Department, Advanced Metallic Materials Division, Korea Institute of Materials Science, 797 Changwondae-ro, Seongsan-gu, Changwon, Gyeongnam 642-831 (Korea, Republic of)

2016-01-15

Precipitation behavior and its effect on hydrogen embrittlement during tempering process of hot-rolled API steel designed with 0.4 wt% Cr and 0.25 wt% Mo were investigated. The base steel was normalized and then tempered at 650 °C for up to 60 min. The precipitation behavior of the examined steel was explored using transmission electron microscopy (TEM) analysis, and it was found that the precipitation sequence during tempering at 650 °C were as follows: MX+M{sub 3}C→MX→MX+M{sub 7}C{sub 3}+M{sub 23}C{sub 6}. The change of particle fraction was measured by electrolytic extraction technique. At the early stage of tempering, the particle fraction greatly decreased due to dissolution of M{sub 3}C particle, and increased after 10 min by the precipitation of M{sub 7}C{sub 3} and M{sub 23}C{sub 6} particles. The particle fraction showed a peak at 30 min tempering and decreased again due to the dissolution of M{sub 7}C{sub 3} particle. Vickers hardness tests of base steel and tempered samples were carried out, and then the hardness was changed by accompanying with the change of particle fraction. The sensitivity of hydrogen embrittlement was evaluated through hydrogen induced cracking (HIC) tests, and the results clearly proved that HIC resistance of tempered samples was better than that of base steel due to the formation of tempered martensite, and then the HIC resistance changed depending on the precipitation behavior during tempering, i.e., the precipitation of coarse M{sub 23}C{sub 6} and M{sub 7}C{sub 3} particles deteriorated the HIC resistance.
Influence of precipitation behavior on mechanical properties and hydrogen induced cracking during tempering of hot-rolled API steel for tubing

International Nuclear Information System (INIS)

Moon, Joonoh; Choi, Jongmin; Han, Seong-Kyung; Huh, Sungyul; Kim, Seong-Ju; Lee, Chang-Hoon; Lee, Tae-Ho

2016-01-01

Precipitation behavior and its effect on hydrogen embrittlement during tempering process of hot-rolled API steel designed with 0.4 wt% Cr and 0.25 wt% Mo were investigated. The base steel was normalized and then tempered at 650 °C for up to 60 min. The precipitation behavior of the examined steel was explored using transmission electron microscopy (TEM) analysis, and it was found that the precipitation sequence during tempering at 650 °C were as follows: MX+M_3C→MX→MX+M_7C_3+M_2_3C_6. The change of particle fraction was measured by electrolytic extraction technique. At the early stage of tempering, the particle fraction greatly decreased due to dissolution of M_3C particle, and increased after 10 min by the precipitation of M_7C_3 and M_2_3C_6 particles. The particle fraction showed a peak at 30 min tempering and decreased again due to the dissolution of M_7C_3 particle. Vickers hardness tests of base steel and tempered samples were carried out, and then the hardness was changed by accompanying with the change of particle fraction. The sensitivity of hydrogen embrittlement was evaluated through hydrogen induced cracking (HIC) tests, and the results clearly proved that HIC resistance of tempered samples was better than that of base steel due to the formation of tempered martensite, and then the HIC resistance changed depending on the precipitation behavior during tempering, i.e., the precipitation of coarse M_2_3C_6 and M_7C_3 particles deteriorated the HIC resistance.
Temperate and virulent Lactobacillus delbrueckii bacteriophages: comparison of their thermal and chemical resistance.

Science.gov (United States)

Ebrecht, Ana C; Guglielmotti, Daniela M; Tremmel, Gustavo; Reinheimer, Jorge A; Suárez, Viviana B

2010-06-01

The aim of this work was to study the efficiency of diverse chemical and thermal treatments usually used in dairy industries to control the number of virulent and temperate Lactobacillus delbrueckii bacteriophages. Two temperate (Cb1/204 and Cb1/342) and three virulent (BYM, YAB and Ib3) phages were studied. The thermal treatments applied were: 63 degrees C for 30 min (low temperature--long time, LTLT), 72 degrees C for 15 s (high temperature--short time, HTST), 82 degrees C for 5 min (milk destined to yogurt elaboration) and 90 degrees C for 15 min (FIL-IDF). The chemical agents studied were: sodium hypochlorite, ethanol, isopropanol, peracetic acid, biocides A (quaternary ammonium chloride), B (hydrogen peroxide, peracetic acid and peroctanoic acid), C (alkaline chloride foam), D (p-toluensulfonchloroamide, sodium salt) and E (ethoxylated nonylphenol and phosphoric acid). The kinetics of inactivation were drew and T(99) (time necessary to eliminate the 99% of phage particles) calculated. Results obtained showed that temperate phages revealed lower resistance than the virulent ones to the treatment temperatures. Biocides A, C, E and peracetic acid showed a notable efficiency to inactivate high concentrations of temperate and virulent L. delbrueckii phages. Biocide B evidenced, in general, a good capacity to eliminate the phage particles. Particularly for this biocide virulent phage Ib3 showed the highest resistance in comparison to the rest of temperate and virulent ones. On the contrary, biocide D and isopropanol presented a very low capacity to inactivate all phages studied. The efficiency of ethanol and hypochlorite was variable depending to the phages considered. These results allow a better knowledge and give useful information to outline more effective treatments to reduce the phage infections in dairy plants. 2009 Elsevier Ltd. All rights reserved.
Precipitation behavior and martensite lath coarsening during tempering of T/P92 ferritic heat-resistant steel

Science.gov (United States)

Xu, Lin-qing; Zhang, Dan-tian; Liu, Yong-chang; Ning, Bao-qun; Qiao, Zhi-xia; Yan, Ze-sheng; Li, Hui-jun

2014-05-01

Tempering is an important process for T/P92 ferritic heat-resistant steel from the viewpoint of microstructure control, as it facilitates the formation of final tempered martensite under serving conditions. In this study, we have gained deeper insights on the mechanism underlying the microstructural evolution during tempering treatment, including the precipitation of carbides and the coarsening of martensite laths, as systematically analyzed by optical microscopy, transmission electron microscopy, and high-resolution transmission electron microscopy. The chemical composition of the precipitates was analyzed using energy dispersive X-ray spectroscopy. Results indicate the formation of M3C (cementite) precipitates under normalized conditions. However, they tend to dissolve within a short time of tempering, owing to their low thermal stability. This phenomenon was substantiated by X-ray diffraction analysis. Besides, we could observe the precipitation of fine carbonitrides (MX) along the dislocations. The mechanism of carbon diffusion controlled growth of M23C6 can be expressed by the Zener's equation. The movement of Y-junctions was determined to be the fundamental mechanism underlying the martensite lath coarsening process. Vickers hardness was estimated to determine their mechanical properties. Based on the comprehensive analysis of both the micro-structural evolution and hardness variation, the process of tempering can be separated into three steps.
Investigation of the self tempering effect of martensite by means of atom probe tomography

International Nuclear Information System (INIS)

Sackl, Stephanie; Clemens, Helmut; Primig, Sophie

2015-01-01

Self-tempering effects can be observed in steels with relatively high martensite start temperatures. After the formation of the first martensitic laths, carbon is able to diffuse in these laths during cooling, which can be attributed to sufficiently high temperatures. This effect cannot be observed in laths formed at lower temperatures. In steels containing up to 0.2 m.-% carbon, up to 90 % of the carbon atoms in the martensite segregate to dislocations during quenching. Due to its atomic resolution and sensitivity with respect to light elements, atom probe tomography is very well suited for the investigation of this phenomenon. In this study, the self-tempering effect in a quenched and tempered steel 42CrMo4 with a martensite start temperature of 310 C is investigated by means of atom probe tomography.

Prey type and foraging ecology of Sanderlings Calidris alba in different climate zones: are tropical areas more favourable than temperate sites?

Directory of Open Access Journals (Sweden)

Kirsten Grond

2015-08-01

Full Text Available Sanderlings (Calidris alba are long-distance migratory shorebirds with a non-breeding range that spans temperate and tropical coastal habitats. Breeding in the High Arctic combined with non-breeding seasons in the tropics necessitate long migrations, which are energetically demanding. On an annual basis, the higher energy expenditures during migration might pay off if food availability in the tropics is higher than at temperate latitudes. We compared foraging behaviour of birds at a north temperate and a tropical non-breeding site in the Netherlands and Ghana, respectively. In both cases the birds used similar habitats (open beaches, and experienced similar periods of daylight, which enabled us to compare food abundance and availability, and behavioural time budgets and food intake. During the non-breeding season, Sanderlings in the Netherlands spent 79% of their day foraging; in Ghana birds spent only 38% of the daytime period foraging and the largest proportion of their time resting (58%. The main prey item in the Netherlands was the soft-bodied polychaete Scolelepis squamata, while Sanderlings in Ghana fed almost exclusively on the bivalve Donax pulchellus, which they swallowed whole and crushed internally. Average availability of polychaete worms in the Netherlands was 7.4 g ash free dry mass (AFDM m−2, which was one tenth of the 77.1 g AFDM m−2 estimated for the beach in Ghana. In the tropical environment of Ghana the Sanderlings combined relatively low energy requirements with high prey intake rates (1.64 mg opposed to 0.13 mg AFDM s−1 for Ghana and the Netherlands respectively. Although this may suggest that the Ghana beaches are the most favourable environment, processing the hard-shelled bivalve (D. pulchellus which is the staple food could be costly. The large amount of daytime spent resting in Ghana may be indicative of the time needed to process the shell fragments, rather than indicate rest.
Survey of bacterial diversity in chronic wounds using Pyrosequencing, DGGE, and full ribosome shotgun sequencing

Directory of Open Access Journals (Sweden)

Wolcott Benjamin M

2008-03-01

Full Text Available Abstract Background Chronic wound pathogenic biofilms are host-pathogen environments that colonize and exist as a cohabitation of many bacterial species. These bacterial populations cooperate to promote their own survival and the chronic nature of the infection. Few studies have performed extensive surveys of the bacterial populations that occur within different types of chronic wound biofilms. The use of 3 separate16S-based molecular amplifications followed by pyrosequencing, shotgun Sanger sequencing, and denaturing gradient gel electrophoresis were utilized to survey the major populations of bacteria that occur in the pathogenic biofilms of three types of chronic wound types: diabetic foot ulcers (D, venous leg ulcers (V, and pressure ulcers (P. Results There are specific major populations of bacteria that were evident in the biofilms of all chronic wound types, including Staphylococcus, Pseudomonas, Peptoniphilus, Enterobacter, Stenotrophomonas, Finegoldia, and Serratia spp. Each of the wound types reveals marked differences in bacterial populations, such as pressure ulcers in which 62% of the populations were identified as obligate anaerobes. There were also populations of bacteria that were identified but not recognized as wound pathogens, such as Abiotrophia para-adiacens and Rhodopseudomonas spp. Results of molecular analyses were also compared to those obtained using traditional culture-based diagnostics. Only in one wound type did culture methods correctly identify the primary bacterial population indicating the need for improved diagnostic methods. Conclusion If clinicians can gain a better understanding of the wound's microbiota, it will give them a greater understanding of the wound's ecology and will allow them to better manage healing of the wound improving the prognosis of patients. This research highlights the necessity to begin evaluating, studying, and treating chronic wound pathogenic biofilms as multi-species entities in
Effects of temperate agriculture on neotropical migrant landbirds

Science.gov (United States)

Nicholas L. Rodenhouse; Louis B. Best; Raymond J. O' Connor; Eric K. Bollinger

1993-01-01

The ecology of Neotropical migrant landbirds in temperate farmland is reviewed to develop management recommendations for the conservation of migrants. Migrants constitute about 71% of bird species using farmland and 86% of bird species nesting there. The number and abundances of Neotropical migrants using farmland are greatest in uncultivated edges with trees and...
Solid-wood production from temperate eucalypt plantations: a ...

African Journals Online (AJOL)

Since 1988, there has been a major focus in Tasmania on research for the management of temperate eucalypt plantations for solid wood. This coincided with the formal transfer of large areas of native forest that had previously been part of the production forest estate into reserves, a decision that triggered the establishment ...
Evaluation of heat stress effects on production traits and somatic cell score of Holsteins in a temperate environment.

Science.gov (United States)

Hammami, H; Bormann, J; M'hamdi, N; Montaldo, H H; Gengler, N

2013-03-01

This study was aimed to evaluate the degree of thermal stress exhibited by Holsteins under a continental temperate climate. Milk, fat, protein, and somatic cell count test-day records collected between 2000 and 2011 from 23,963 cows in 604 herds were combined with meteorological data from 14 public weather stations in Luxembourg. Daily values of 6 different thermal indices (TI) weighted in term of temperature, relative humidity, solar radiation, and wind speed were calculated by averaging hourly TI over 24h. Heat stress thresholds were first identified by a broken-line regression model. Regression models were thereafter applied to quantify milk production losses due to heat stress. The tipping points at which milk and protein yields declined were effectively identified. For fat yield, no valid threshold was identified for any of the studied TI. Daily fat yields tended to decrease steadily with increasing values of TI. Daily somatic cell score patterns were marked by increased values at both lowest and highest TI ranges, with a more pronounced reaction to cold stress for apparent temperature indices. Thresholds differed between TI and traits. For production traits, they ranged from 62 (TI(1)) to 80 (TI(3)) for temperature-humidity indices (THI) and from 16 (TI(5)) to 20 (TI(6)) for apparent temperature indices. Corresponding somatic cell score thresholds were higher and ranged from 66 (TI(1)) to 82 (TI(3)) and from 20 (TI(5)) to 23 (TI(6)), respectively. The largest milk decline per unit of mild, moderate, and extreme heat stress levels of 0.164, 0.356, and 0.955 kg, respectively, was observed when using the conventional THI (TI(1)). The highest yearly milk, fat, and protein losses of 54, 5.7, and 4.2 kg, respectively, were detected by TI(2), the THI index that is adjusted for wind speed and solar radiation. The latter index could be considered as the best indicator of heat stress to be used for forecast and herd management in a first step in temperate regions under
Development and validation of predictive simulation model of multi-layer repair welding process by temper bead technique

International Nuclear Information System (INIS)

Okano, Shigetaka; Miyasaka, Fumikazu; Mochizuki, Masahito; Tanaka, Manabu

2015-01-01

Stress corrosion cracking (SCC) has recently been observed in the nickel base alloy weld metal of dissimilar pipe joint used in pressurized water reactor (PWR) . Temper bead technique has been developed as one of repair procedures against SCC applicable in case that post weld heat treatment (PWHT) is difficult to carry out. In this regard, however it is essential to pass the property and performance qualification test to confirm the effect of tempering on the mechanical properties at repair welds before temper bead technique is actually used in practice. Thus the appropriate welding procedure conditions in temper bead technique are determined on the basis of the property and performance qualification testing. It is necessary for certifying the structural soundness and reliability at repair welds but takes a lot of work and time in the present circumstances. Therefore it is desirable to establish the reasonable alternatives for qualifying the property and performance at repair welds. In this study, mathematical modeling and numerical simulation procedures were developed for predicting weld bead configuration and temperature distribution during multi-layer repair welding process by temper bead technique. In the developed simulation technique, characteristics of heat source in temper bead welding are calculated from weld heat input conditions through the arc plasma simulation and then weld bead configuration and temperature distribution during temper bead welding are calculated from characteristics of heat source obtained through the coupling analysis between bead surface shape and thermal conduction. The simulation results were compared with the experimental results under the same welding heat input conditions. As the results, the bead surface shape and temperature distribution, such as A cl lines, were in good agreement between simulation and experimental results. It was concluded that the developed simulation technique has the potential to become useful for
Effect of quenching and tempering process on sulfide stress cracking susceptibility in API-5CT-C110 casing steel

Energy Technology Data Exchange (ETDEWEB)

Liu, M.; Wang, C.H.; Dai, Y.C.; Li, X.; Cao, G.H. [State Key Laboratory of Advanced Special Steel & Shanghai Key Laboratory of Advanced Ferrometallurgy & School of Materials Science and Engineering, Shanghai University, 149 Yanchang Road, Shanghai 200072 (China); Russell, A.M. [Division of Materials Science and Engineering, Ames Laboratory of the U.S.D.O.E., and Department of Materials Science and Engineering, Iowa State University, Ames, IA 50011-2300 (United States); Liu, Y.H.; Dong, X.M. [Tube & Pipe Department, Baosteel Research Institute, Baoshan Iron & Steel Co., Ltd, Shanghai 201900 (China); Zhang, Z.H., E-mail: zhzhang@baosteel.com [Tube & Pipe Department, Baosteel Research Institute, Baoshan Iron & Steel Co., Ltd, Shanghai 201900 (China)

2017-03-14

Three quenching and tempering processes performed on API-5CT-C110 casing steel produced tempered martensite structures and similar mechanical properties but distinct sulfide stress cracking (SSC) behavior as evaluated by Double Cantilever Beam (DCB) testing. An as-quenched specimen tempered at 690 °C for two hours showed superior SSC behavior compared to another specimen tempered at 715 °C for one hour. The latter contained a larger fraction of low-angle boundaries (LABs) and higher values of kernel average misorientation (KAM) than those in the former. Moreover, one more quenching and tempering on the former specimen would produce better SSC resistance with a decrease in the fraction of LABs and the values of KAM. Since dislocations trap hydrogen more strongly than grain boundaries, the specimen with higher KAM values, as well as higher dislocation density, would trap more hydrogen atoms and lead to greater SSC.
The amount of parenchyma and living fibers affects storage of nonstructural carbohydrates in young stems and roots of temperate trees.

Science.gov (United States)

Plavcová, Lenka; Hoch, Günter; Morris, Hugh; Ghiasi, Sara; Jansen, Steven

2016-04-01

Concentrations of nonstructural carbohydrates (NSCs) are used as proxies for the net carbon balance of trees and as indicators of carbon starvation resulting from environmental stress. Woody organs are the largest NSC-storing compartments in forest ecosystems; therefore, it is essential to understand the factors that affect the size of this important storage pool. In wood, NSC are predominantly deposited in ray and axial parenchyma (RAP); however, direct links between nutrient storage and RAP anatomy have not yet been established. Here, we tested whether the NSC storage capacity of wood is influenced by the amount of RAP. We measured NSC concentrations and RAP fractions in root and stem sapwood of 12 temperate species sampled at the onset of winter dormancy and in stem sapwood of four tropical trees growing in an evergreen lowland rainforest. The patterns of starch distribution were visualized by staining with Lugol's solution. The concentration of NSCs in sapwood of temperate trees scales tightly with the amount of RAP and living fibers (LFs), with almost all RAP and LFs being densely packed with starch grains. In contrast, the tropical species had lower NSC concentrations despite their higher RAP and LFs fraction and had considerable interspecific differences in starch distribution. The differences in RAP and LFs abundance affect the ability of sapwood to store NSC in temperate trees, whereas a more diverse set of functions of RAP might be pronounced in species growing in a tropical environment with little seasonality. © 2016 Botanical Society of America.
Methane Ebullition in Temperate Hydropower Reservoirs and Implications for US Policy on Greenhouse Gas Emissions.

Science.gov (United States)

Miller, Benjamin L; Arntzen, Evan V; Goldman, Amy E; Richmond, Marshall C

2017-10-01

The United States is home to 2198 dams actively used for hydropower production. With the December 2015 consensus adoption of the United Nations Framework Convention on Climate Change Paris Agreement, it is important to accurately quantify anthropogenic greenhouse gas emissions. Methane ebullition, or methane bubbles originating from river or lake sediments, has been shown to account for nearly all methane emissions from tropical hydropower reservoirs to the atmosphere. However, distinct ebullitive methane fluxes have been studied in comparatively few temperate hydropower reservoirs globally. This study measures ebullitive and diffusive methane fluxes from two eastern Washington reservoirs, and synthesizes existing studies of methane ebullition in temperate, boreal, and tropical hydropower reservoirs. Ebullition comprises nearly all methane emissions (>97%) from this study's two eastern Washington hydropower reservoirs to the atmosphere. Summer methane ebullition from these reservoirs was higher than ebullition in six southeastern U.S. hydropower reservoirs, however it was similar to temperate reservoirs in other parts of the world. Our literature synthesis suggests that methane ebullition from temperate hydropower reservoirs can be seasonally elevated compared to tropical climates, however annual emissions are likely to be higher within tropical climates, emphasizing the possible range of methane ebullition fluxes and the need for the further study of temperate reservoirs. Possible future changes to the Intergovernmental Panel on Climate Change and UNFCCC guidelines for national greenhouse gas inventories highlights the need for accurate assessment of reservoir emissions.
Methane Ebullition in Temperate Hydropower Reservoirs and Implications for US Policy on Greenhouse Gas Emissions

Science.gov (United States)

Miller, Benjamin L.; Arntzen, Evan V.; Goldman, Amy E.; Richmond, Marshall C.

2017-10-01

The United States is home to 2198 dams actively used for hydropower production. With the December 2015 consensus adoption of the United Nations Framework Convention on Climate Change Paris Agreement, it is important to accurately quantify anthropogenic greenhouse gas emissions. Methane ebullition, or methane bubbles originating from river or lake sediments, has been shown to account for nearly all methane emissions from tropical hydropower reservoirs to the atmosphere. However, distinct ebullitive methane fluxes have been studied in comparatively few temperate hydropower reservoirs globally. This study measures ebullitive and diffusive methane fluxes from two eastern Washington reservoirs, and synthesizes existing studies of methane ebullition in temperate, boreal, and tropical hydropower reservoirs. Ebullition comprises nearly all methane emissions (>97%) from this study's two eastern Washington hydropower reservoirs to the atmosphere. Summer methane ebullition from these reservoirs was higher than ebullition in six southeastern U.S. hydropower reservoirs, however it was similar to temperate reservoirs in other parts of the world. Our literature synthesis suggests that methane ebullition from temperate hydropower reservoirs can be seasonally elevated compared to tropical climates, however annual emissions are likely to be higher within tropical climates, emphasizing the possible range of methane ebullition fluxes and the need for the further study of temperate reservoirs. Possible future changes to the Intergovernmental Panel on Climate Change and UNFCCC guidelines for national greenhouse gas inventories highlights the need for accurate assessment of reservoir emissions.
Seasonal ovulatory activity exists in tropical Creole female goats and Black Belly ewes subjected to a temperate photoperiod.

Science.gov (United States)

Chemineau, Philippe; Daveau, Agnès; Cognié, Yves; Aumont, Gilles; Chesneau, Didier

2004-08-27

Seasonality of ovulatory activity is observed in European sheep and goat breeds, whereas tropical breeds show almost continuous ovulatory activity. It is not known if these tropical breeds are sensitive or not to temperate photoperiod. This study was therefore designed to determine whether tropical Creole goats and Black-Belly ewes are sensitive to temperate photoperiod. Two groups of adult females in each species, either progeny or directly born from imported embryos, were used and maintained in light-proof rooms under simulated temperate (8 to 16 h of light per day) or tropical (11 - 13 h) photoperiods. Ovulatory activity was determined by blood progesterone assays for more than two years. The experiment lasted 33 months in goats and 25 months in ewes. Marked seasonality of ovulatory activity appeared in the temperate group of Creole female goats. The percentage of female goats experiencing at least one ovulation per month dramatically decreased from May to September for the three years (0%, 27% and 0%, respectively). Tropical female goats demonstrated much less seasonality, as the percentage of goats experiencing at least one ovulation per month never went below 56%. These differences were significant. Both groups of temperate and tropical Black-Belly ewes experienced a marked seasonality in their ovulatory activity, with only a slightly significant difference between groups. The percentage of ewes experiencing at least one ovulation per month dropped dramatically in April and rose again in August (tropical ewes) or September (temperate ewes). The percentage of ewes experiencing at least one ovulation per month never went below 8% and 17% (for tropical and temperate ewes respectively) during the spring and summer months. An important seasonality in ovulatory activity of tropical Creole goats was observed when females were exposed to a simulated temperate photoperiod. An unexpected finding was that Black-Belly ewes and, to a lesser extent, Creole goats exposed to
Using Growing Self-Organising Maps to Improve the Binning Process in Environmental Whole-Genome Shotgun Sequencing

Science.gov (United States)

Chan, Chon-Kit Kenneth; Hsu, Arthur L.; Tang, Sen-Lin; Halgamuge, Saman K.

2008-01-01

Metagenomic projects using whole-genome shotgun (WGS) sequencing produces many unassembled DNA sequences and small contigs. The step of clustering these sequences, based on biological and molecular features, is called binning. A reported strategy for binning that combines oligonucleotide frequency and self-organising maps (SOM) shows high potential. We improve this strategy by identifying suitable training features, implementing a better clustering algorithm, and defining quantitative measures for assessing results. We investigated the suitability of each of di-, tri-, tetra-, and pentanucleotide frequencies. The results show that dinucleotide frequency is not a sufficiently strong signature for binning 10 kb long DNA sequences, compared to the other three. Furthermore, we observed that increased order of oligonucleotide frequency may deteriorate the assignment result in some cases, which indicates the possible existence of optimal species-specific oligonucleotide frequency. We replaced SOM with growing self-organising map (GSOM) where comparable results are obtained while gaining 7%–15% speed improvement. PMID:18288261
Parallel continuous simulated tempering and its applications in large-scale molecular simulations

Energy Technology Data Exchange (ETDEWEB)

Zang, Tianwu; Yu, Linglin; Zhang, Chong [Applied Physics Program and Department of Bioengineering, Rice University, Houston, Texas 77005 (United States); Ma, Jianpeng, E-mail: jpma@bcm.tmc.edu [Applied Physics Program and Department of Bioengineering, Rice University, Houston, Texas 77005 (United States); Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, One Baylor Plaza, BCM-125, Houston, Texas 77030 (United States)

2014-07-28

In this paper, we introduce a parallel continuous simulated tempering (PCST) method for enhanced sampling in studying large complex systems. It mainly inherits the continuous simulated tempering (CST) method in our previous studies [C. Zhang and J. Ma, J. Chem. Phys. 130, 194112 (2009); C. Zhang and J. Ma, J. Chem. Phys. 132, 244101 (2010)], while adopts the spirit of parallel tempering (PT), or replica exchange method, by employing multiple copies with different temperature distributions. Differing from conventional PT methods, despite the large stride of total temperature range, the PCST method requires very few copies of simulations, typically 2–3 copies, yet it is still capable of maintaining a high rate of exchange between neighboring copies. Furthermore, in PCST method, the size of the system does not dramatically affect the number of copy needed because the exchange rate is independent of total potential energy, thus providing an enormous advantage over conventional PT methods in studying very large systems. The sampling efficiency of PCST was tested in two-dimensional Ising model, Lennard-Jones liquid and all-atom folding simulation of a small globular protein trp-cage in explicit solvent. The results demonstrate that the PCST method significantly improves sampling efficiency compared with other methods and it is particularly effective in simulating systems with long relaxation time or correlation time. We expect the PCST method to be a good alternative to parallel tempering methods in simulating large systems such as phase transition and dynamics of macromolecules in explicit solvent.
[Factors affecting the vegetation restoration after fires in cold temperate wetlands: A review].

Science.gov (United States)

Zhao, Feng-Jun; Wang, Li-Zhong; Shu, Li-Fu; Chen, Peng-Yu; Chen, Li-guang

2013-03-01

Cold temperate wetland plays an important role in maintaining regional ecological balance. Fire is an important disturbance factor in wetland ecosystem. Severe burning can induce the marked degradation of the ecological functions of wetland ecosystem. The vegetation restoration, especially the early vegetation restoration, after fires, is the premise and basis for the recovery of the ecological functions of the ecosystem. This paper reviewed the research progress on the factors affecting the vegetation restoration after fires in wetlands. The vegetation restoration after fires in cold temperate wetlands was controlled by the fire intensity, fire size, vegetation types before fires, regeneration characteristics of plant species, and site conditions. It was considered that the long-term monitoring on the post-fire vegetation restoration in cold temperate wetland, the key factors affecting the vegetation restoration, the roles of frozen soil layer on the post-fire vegetation restoration, and the theories and technologies on the vegetation restoration would be the main research directions in the future.
The impact of mixing lithologies in clast shape measurements on its discriminatory power - a case study from a temperate Alpine glacier

Science.gov (United States)

Lukas, S.; Coray, S.; Graf, A.; Schlüchter, C.

2009-04-01

Clast shape measurements have become a standard tool in the reconstruction of transport histories in a variety of depositional settings (Demir et al., 2009). In glacial environments, the combined use of clast form and roundness has become an established tool in the past 15 years or so, and environments where this tool has been used range from temperate and polythermal to cold-based glaciers. In addition, the method has been transferred to palaeo-environments where the knowledge gained in aforementioned studies has taken the degree of accuracy in sedimentological investigations to a higher level (cf. Lukas et al., 2009, and references therein). All of these studies use the approach originally advocated by Benn and Ballantyne (1994), but perhaps the most notable difference is that some researchers mix different lithologies within their samples of 50 clasts. However, the role of lithology on clast shape in a glacial environment has never been systematically analysed, except for one pilot study (Bennett et al., 1997). Likewise, some previous studies have highlighted the problem of distinguishing between fluvial and subglacially-transported clasts using co-variance plots, and thus, more work is needed in both these respects. We here present a set of clast shape data gathered from the foreland and surrounding slopes of temperate Findelengletscher, Switzerland, to (a) test the versatility of clast shape in distinguishing of populations of clasts transported along different paths and (b) assess the role of lithology on the discriminatory potential of the method, most notably using co-variance plots. The main result of this pilot study is that the sampled lithology has a marked effect on clast shape results within the same control group. This is manifest in an overlap of envelopes in both RA- or RWR-C40-covariance plots. If kept separate, all three lithologies display separate control envelopes, in this case in RWR-C40-co-variance plots, thus keeping their discriminatory
Prediction of hardness in pieces of quenched and tempered steel

International Nuclear Information System (INIS)

Yanzon, Rodolfo Carlos; Rodriguez, Augusto; Sanchez, Arlington Ricardo

2006-01-01

This presentation describes the first stage of a work plan to obtain a simple software, for predicting properties at certain points of a quenched and tempered piece. In this first stage, this prediction is limited to cylindrical pieces made with steels whose chemical composition is within a certain range. The methodology basically consists of obtaining , from experimental data, a mathematical tool able to predict the hardness value, for Jominy test piece ends made with this type of steel. This meant beginning with the analysis of the usual forms of theoretical calculation of Jominy curves of quenched samples, which resulted in a proposal to modify the Just equation. Two different mathematical methods were then developed, that could predict hardness values in tempered Jominy test pieces. One, based on the determination of polynomic equations, that reproduces the loss of hardness at points along the test piece, base on the quenching value and as a function of the tempering temperature. The other one, which uses the lineal multidimensional interpolation method, because of its ease of application, has been selected as the mathematical tool to use in the software under development. At this stage of the work, the relationship between the points on the piece and those on the Jominy test pieces is carried out by the Lamont method and the representative variable of the temperature/time combination for the tempering process itself, is obtained with software based on the Hollomon and Jaffe expression. Data is needed to define: a) chemical composition and grain size of the steel used, b) diameter of the piece, c) 'H G ' severity of the quenching medium d) temperature and time of the tempering. The work's second stage continued with the addition of hardness values measured in Jominy test pieces made with other steels. The chemical composition and grain size data of each steel introduced are converted by the software into one more variable, using the concept of ideal critical
Reduced germination success of temperate grassland seeds sown in dung: consequences for post-dispersal seed fate.

Science.gov (United States)

Milotić, T; Hoffmann, M

2016-11-01

Endozoochory is one of the main drivers shaping temperate grassland communities by maintaining plant populations of its constituents and enabling plants to colonize new habitats. Successful endozoochorous dispersal implies that seeds not only get consumed and survive the digestive tract but are also able to develop into viable seedlings in a dung environment. We experimentally assessed the germination probability and timing of 15 annual and perennial temperate European grassland species in cattle and horse dung and in different climatic conditions (greenhouse and outdoor conditions). Interspecific variation in germinability and germination timing are found, while life strategy had only an effect on germination timing. We found adverse effects of both cattle and horse dung on the germination characteristics of all tested grassland species, but the effects of cattle dung were more pronounced. In comparison with the control treatment, fewer seeds emerged in dung and more time was needed to germinate. Also, germination metrics clearly differed between the artificial greenhouse and outdoor conditions, with generally a lower germinability in outdoor conditions. According to our results, a large cost seems to be associated with endozoochorous dispersal in this stage of the life cycle, as seed dispersal effectiveness strongly depends on the quality of the deposition site with a lowered survival and germination probability when seeds are deposited in dung. © 2016 German Botanical Society and The Royal Botanical Society of the Netherlands.
The Fracture Process of Tempered Soda-Lime-Silica Glass

DEFF Research Database (Denmark)

Nielsen, Jens Henrik; Olesen, John Forbes; Stang, Henrik

2009-01-01

This work presents experimental observations of the characteristic fracture process of tempered glass. Square specimens with a side length of 300 mm, various thicknesses and a residual stress state characterized by photoelastic measurements were used. Fracture was initiated using a 2.5 mm diamond...
Growth performance of commercial temperate mushrooms Agaricus bisporus and Hypsizygus sp. under local environment

International Nuclear Information System (INIS)

Rosnani Abdul Rashid; Mat Rasol Awang; Hassan Hamdani Hassan Mutaat; Mohd Meswan Maskom

2010-01-01

To date, the Malaysian mushroom industry focuses on only seven species of mushroom for commercial purpose. To expand and further develop the mushroom industry, new mushroom species should be introduced into our local market. Temperate mushrooms are possible to be cultivated commercially in Malaysia but the optimisation of growth performance for high quality spawn and high mushroom yield need to be studied. In the present study the growth performance of mycelia of Agaricus bisporus and Hypsizygus sp. on culture media and substrates were investigated. Four types of culture media, viz. Potato Dextrose Agar (PDA), Nutrient Agar (NA), Malt Yeast Extract (MYE) and Complete Yeast Media (CYM) were used to determine the suitable culturing media for mycelial growth. The mycelia were inoculated on oil palm empty fruit bunch (EFB) and sawdust substrate and incubated at room temperature and in a low temperature in incubation room (10 - 12 degree Celsius). From the observation, Agaricus bisporus grew better on Malt Yeast Extract (MYE) medium with a growth rate of 0.306 cm/ day. Complete Yeast Media (CYM) was found more suitable for Hypsizygus sp. with a growth rate of 1.049 cm/ day. The linear growth rate of mycelium as measured on the surface of mushroom bag of Agaricus bisporus on EFB incubated at room temperature was 0.4364 cm/ day and cool temperature was 0.055 cm/ day. For Hypsizygus sp. the linear growth rate of the mycelium was 2.11 cm/ day. The linear growth of Hypsizygus sp. on sawdust substrate incubated in cool temperature was 1.4 cm/ day. (author)
MaRaCluster: A Fragment Rarity Metric for Clustering Fragment Spectra in Shotgun Proteomics.

Science.gov (United States)

The, Matthew; Käll, Lukas

2016-03-04

Shotgun proteomics experiments generate large amounts of fragment spectra as primary data, normally with high redundancy between and within experiments. Here, we have devised a clustering technique to identify fragment spectra stemming from the same species of peptide. This is a powerful alternative method to traditional search engines for analyzing spectra, specifically useful for larger scale mass spectrometry studies. As an aid in this process, we propose a distance calculation relying on the rarity of experimental fragment peaks, following the intuition that peaks shared by only a few spectra offer more evidence than peaks shared by a large number of spectra. We used this distance calculation and a complete-linkage scheme to cluster data from a recent large-scale mass spectrometry-based study. The clusterings produced by our method have up to 40% more identified peptides for their consensus spectra compared to those produced by the previous state-of-the-art method. We see that our method would advance the construction of spectral libraries as well as serve as a tool for mining large sets of fragment spectra. The source code and Ubuntu binary packages are available at https://github.com/statisticalbiotechnology/maracluster (under an Apache 2.0 license).

Effect of high temperature tempering on the mechanical properties and microstructure of the modified 410 martensitic stainless steel

Science.gov (United States)

Mabruri, Efendi; Pasaribu, Rahmat Ramadhan; Sugandi, Moh. Tri; Sunardi

2018-05-01

This paper reports the influence of high tempering temperature and holding time on the mechanical properties and microstructure of the recently modified 410 martensitic stainless steel. The modified steel was prepared by induction melting followed by hot forging, quenching and tempering. The hardness and tensile strength of the steels decreased with increasing tempering temperature from 600 to 700 °C and with increasing holding time from 1 to 6 h. Based on microstructural images, it was observed the coarsening of lath martensite and of the metal carbides as well. However, a relatively high hardness and strength were still exibited by this steel after tempering at a such high temperature of 600-700 °C. The partition of Mo into the carbides identified by EDS analysis may correlate with this situation.
The tempered stable process with infinitely divisible inverse subordinators

International Nuclear Information System (INIS)

Wyłomańska, Agnieszka

2013-01-01

In the last decade processes driven by inverse subordinators have become extremely popular. They have been used in many different applications, especially for data with observable constant time periods. However, the classical model, i.e. the subordinated Brownian motion, can be inappropriate for the description of observed phenomena that exhibit behavior not adequate for Gaussian systems. Therefore, in this paper we extend the classical approach and replace the Brownian motion by the tempered stable process. Moreover, on the other hand, as an extension of the classical model, we analyze the general class of inverse subordinators. We examine the main properties of the tempered stable process driven by inverse subordinators from the infinitely divisible class of distributions. We show the fractional Fokker–Planck equation of the examined process and the asymptotic behavior of the mean square displacement for two cases of subordinators. Additionally, we examine how an external force can influence the examined characteristics. (paper)
On choice of tempered steels

International Nuclear Information System (INIS)

Govorov, A.A.; Pan'shin, I.F.; Rakhmanov, V.I.

1978-01-01

For the purpose of developing a graphical method for choosing structural steels, a change in the propagation work of a crack and in the critical temperature of brittleness of 40, 40Kh, 40KhN, and 40KhNM steels, was examined depending on the hardness after hardening and tempering. A diagram enabling to choose the grade of steel for making an article of known dimensions according to the preset values of its mechanical properties has been plotted. The developed selection scheme takes into account the hardenability of steels and the influence of the hardness after thermal treatment on the cold-shortness of steel
Role of temperate zone forests in the world carbon cycle: problem definition and research needs

Energy Technology Data Exchange (ETDEWEB)

Armentano, T.V.; Hett, J. (eds.)

1979-01-01

The proceedings of a workshop on carbon uptake and losses from temperate zone forests are presented. The goals of the workshop were to analyze existing data on growth and utilization of the temperate zone forest carbon pool and to identify further research needs in relation to the role of temperate forests in the global carbon cycle. Total standing stock and growth recovery transients were examined for most of the temperate region over a period from pre-settlement times to the present, with emphasis on the last three decades. Because of data availability, certain regions and topics were covered more in detail than others. Forest inventory data from most of the commercial timberlands of the north temperate zone suggest these forests have functioned over the past several decades as an annual sink for about 10/sup 9/ metric tons of carbon. Thus, net growth of these forests has withdrawn carbon from the atmosphere at a rate equivalent, approximately, to 50% of the annual rise in atmospheric carbon. Various data inadequacies make this estimate probably no more precise than plus or minus half of the value. Analysis of growth and vegetation changes in New England and the southeastern United States shows that forest biomass has partly recovered since extensive clearing took place in the 18th and 19th centuries. This regrowth represents a net withdrawal of carbon (carbon sink) from the atmosphere in recent decades, although the difference in pool size between present and original forests means that, in the longer term, the two regions have functioned as carbon sources.
Effects of 28 days of resistance exercise and consuming a commercially available pre-workout supplement, NO-Shotgun®, on body composition, muscle strength and mass, markers of satellite cell activation, and clinical safety markers in males

Directory of Open Access Journals (Sweden)

Leutholtz Brian

2009-08-01

Full Text Available Abstract Purpose This study determined the effects of 28 days of heavy resistance exercise combined with the nutritional supplement, NO-Shotgun®, on body composition, muscle strength and mass, markers of satellite cell activation, and clinical safety markers. Methods Eighteen non-resistance-trained males participated in a resistance training program (3 × 10-RM 4 times/wk for 28 days while also ingesting 27 g/day of placebo (PL or NO-Shotgun® (NO 30 min prior to exercise. Data were analyzed with separate 2 × 2 ANOVA and t-tests (p Results Total body mass was increased in both groups (p = 0.001, but without any significant increases in total body water (p = 0.77. No significant changes occurred with fat mass (p = 0.62; however fat-free mass did increase with training (p = 0.001, and NO was significantly greater than PL (p = 0.001. Bench press strength for NO was significantly greater than PL (p = 0.003. Myofibrillar protein increased with training (p = 0.001, with NO being significantly greater than PL (p = 0.019. Serum IGF-1 (p = 0.046 and HGF (p = 0.06 were significantly increased with training and for NO HGF was greater than PL (p = 0.002. Muscle phosphorylated c-met was increased with training for both groups (p = 0.019. Total DNA was increased in both groups (p = 0.006, while NO was significantly greater than PL (p = 0.038. For DNA/protein, PL was decreased and NO was not changed (p = 0.014. All of the myogenic regulatory factors were increased with training; however, NO was shown to be significantly greater than PL for Myo-D (p = 0.008 and MRF-4 (p = 0.022. No significant differences were located for any of the whole blood and serum clinical chemistry markers (p > 0.05. Conclusion When combined with heavy resistance training for 28 days, NO-Shotgun® is not associated with any negative side effects, nor does it abnormally impact any of the clinical chemistry markers. Rather, NO-Shotgun® effectively increases muscle strength and mass
Northward migrating trees establish in treefall gaps at the northern limit of the temperate-boreal ecotone, Ontario, Canada.

Science.gov (United States)

Leithead, Mark D; Anand, Madhur; Silva, Lucas C R

2010-12-01

Climate change is expected to promote migration of species. In ecotones, areas of ecological tension, disturbances may provide opportunities for some migrating species to establish in otherwise competitive environments. The size of and time since disturbance may determine the establishment ability of these species. We investigated gap dynamics of an old-growth red pine (Pinus resinosa Sol. ex Aiton) forest in the Great Lakes-St. Lawrence forest in northern Ontario, Canada, a transition zone between temperate and boreal forest. We investigated the effects of gaps of different sizes and ages on tree species abundance and basal area. Our results show that tree species from the temperate forest further south, such as red maple (Acer rubrum L.), red oak (Quercus rubra L.), and white pine (Pinus strobus L.), establish more often in large, old gaps; however, tree species that have more northern distributions, such as black spruce (Picea mariana Mill.), paper birch (Betula papyrifera Marsh.), and red pine show no difference in establishment ability with gap size or age. These differences in composition could not be attributed to autogenic succession. We conclude that treefall gaps in this forest facilitate the establishment of northward migrating species, potentially providing a pathway for future forest migration in response to recent changes in climate.
A linear programming model for protein inference problem in shotgun proteomics.

Science.gov (United States)

Huang, Ting; He, Zengyou

2012-11-15

Assembling peptides identified from tandem mass spectra into a list of proteins, referred to as protein inference, is an important issue in shotgun proteomics. The objective of protein inference is to find a subset of proteins that are truly present in the sample. Although many methods have been proposed for protein inference, several issues such as peptide degeneracy still remain unsolved. In this article, we present a linear programming model for protein inference. In this model, we use a transformation of the joint probability that each peptide/protein pair is present in the sample as the variable. Then, both the peptide probability and protein probability can be expressed as a formula in terms of the linear combination of these variables. Based on this simple fact, the protein inference problem is formulated as an optimization problem: minimize the number of proteins with non-zero probabilities under the constraint that the difference between the calculated peptide probability and the peptide probability generated from peptide identification algorithms should be less than some threshold. This model addresses the peptide degeneracy issue by forcing some joint probability variables involving degenerate peptides to be zero in a rigorous manner. The corresponding inference algorithm is named as ProteinLP. We test the performance of ProteinLP on six datasets. Experimental results show that our method is competitive with the state-of-the-art protein inference algorithms. The source code of our algorithm is available at: https://sourceforge.net/projects/prolp/. zyhe@dlut.edu.cn. Supplementary data are available at Bioinformatics Online.
Ovarian changes during the reproductive cycle of the Tupinambis merianae lizard raised in a temperate environment

Directory of Open Access Journals (Sweden)

Manes, Mario E.

2007-03-01

Full Text Available El ciclo reproductor de hembras de Tupinambis merianae criadas en ambiente templado consiste de tres fases gonadales: previtelogénica, vitelogénica y postovulatoria o lútea. Durante la fase previtelogénica, que ocupa gran parte del verano, el otoño e invierno, los ovarios son pequeños, pesan menos de 4 g y contienen solamente folículos no vitelogénicos, los cuales se desarrollan lentamente a partir de los nidos germinales, alcanzando unos 5 mm de diámetro. Debido a una maduración gonadal asincrónica entre ambos sexos, las cópulas acontecen cuando los ovarios son aún previtelogénicos. Luego sobreviene una corta e intensa vitelogénesis, durante la cual los folículos crecen uniformemente incrementando unas 6 veces su diámetro (cerca de 30 mm, mientras que la masa ovárica total alcanza unos 400 g. El proceso culmina entre los 15 y 20 días, con una ovulación generalizada y la subsiguiente oviposición. Como consecuencia, los ovarios postovulatorios aparecen reducidos a unos 5 g, con una superficie casi enteramente cubierta de cicatrices foliculares, las cuales pronto desarrollan cuerpos lúteos. La detención del ciclo ovárico, con atresia folicular previtelogénica masiva, como resultado del aislamiento de las hembras, permite concluir sobre la existencia de estímulos sexuales promotores de la vitelogénesis. The reproductive cycle of Tupinambis merianae females raised in a temperate environment consists of three gonadal phases: previtellogenic, vitellogenic and postovulatory or luteal phases. During the previtellogenic phase, which takes great part of the summer, autumn and winter, the ovaries are small, weigh less than 4 g, and contain only nonvitellogenic follicles, which develop slowly from germinal beds, until they are almost 5 mm diameter. Due to an asynchronous gonadal maturation in both sexes, matings occur when ovaries are still previtellogenic. Then comes a short and intense vitellogenesis, during which follicles grow
Tempering response to different morphologies of martensite in tensile deformation of dual-phase steel

International Nuclear Information System (INIS)

Ahmad, E.; Manzoor, T.; Sarwar, M.; Arif, M.; Hussain, N.

2011-01-01

A low alloy steel containing 0.2% C was heat treated with three cycles of heat treatments with the aim to acquire different morphologies of martensite in dual phase microstructure. Microscopic examination revealed that the morphologies consisting of grain boundary growth, scattered laths and bulk form of martensite were obtained. These morphologies have their distinct patterns of distribution in the matrix (ferrite). In tensile properties observations the dual phase steel with bulk morphology of martensite showed minimum of ductility but high tensile strength as compared to other two morphologies. This may be due to poor alignments of bulk martensite particles along tensile axes during deformation. Tempering was employed with various holding times at 550 deg. C to induce ductility in the heat treated material. The tempering progressively increased the ductility by increasing holding time. However, tempering response to strengths and ductilities was different to all three morphologies of martensite. (author)
Testing the correlation of fragmented pollen records of the middle and late Pleistocene temperate stages

DEFF Research Database (Denmark)

Kuneš, Petr; Odgaard, Bent Vad

Quaternary temperate stages have long been described based on changing pollen abundances of various tree taxa in lacustrine sediments. Later, attempts have been made to assign such biostratigraphic units to distinct marine isotope stages (MIS). Existing continuous chronosequences from Southern...... records depends on site-to-site correlations. This comparison has often been performed on a visual basis, lacking clearly defined protocols and statements of underlying assumptions. Here I test the correlation of well and poorly known pollen records of the middle- and late-Pleistocene temperate stages...... from Northern-Central Europe and evaluate the usefulness of several numerical techniques. TWINSPAN analysis identifies groups of temperate stages based on presence/absence of their indicative taxa and may be useful for distinguishing between older and younger interglacials. Site-to-site sequence...
Studying on tempering transformation and internal friction for low carbon bainitic steel

International Nuclear Information System (INIS)

Li, Weijuan; Cai, Mingyu; Wang, Dong; Zhang, Junwei; Zhao, Shengshi; Shao, Peiying

2017-01-01

The changes of microstructure during the process of tempering transformation were analyzed by scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray diffraction and internal friction (IF) for low carbon bainite steel. The yield strength of the steel was tested after tempering transformation. The results showed that the microstructures of the experimental steel in rolled state were composed of lath bainite and granular bainite with a little Mo 2 C and NbC precipitates. The lath width of bainite increased continuously with the tempering time. More cell structures with different orientations were formed in bainite laths. Furthermore, poly-gonization gradually began in some laths. The microstructure of granular bainite increased and was coarsened when it devoured the lath bainite continuously. The dislocation density of the bainitic ferrite decreased continuously as Mo 2 C and NbC precipitations were further increasing. The peak value of Snoek decreased continuously in internal friction-temperature spectrum. The peak value of SKK at the surface decreased at first and then increased. The peak value of SKK at the center decreased firstly and then had little change. Besides, the yield strength of the steel increased firstly and then decreased.
Studying on tempering transformation and internal friction for low carbon bainitic steel

Energy Technology Data Exchange (ETDEWEB)

Li, Weijuan, E-mail: liweijuan826@163.com; Cai, Mingyu; Wang, Dong; Zhang, Junwei; Zhao, Shengshi; Shao, Peiying

2017-01-02

The changes of microstructure during the process of tempering transformation were analyzed by scanning electron microscopy (SEM), transmission electron microscopy (TEM), X-ray diffraction and internal friction (IF) for low carbon bainite steel. The yield strength of the steel was tested after tempering transformation. The results showed that the microstructures of the experimental steel in rolled state were composed of lath bainite and granular bainite with a little Mo{sub 2}C and NbC precipitates. The lath width of bainite increased continuously with the tempering time. More cell structures with different orientations were formed in bainite laths. Furthermore, poly-gonization gradually began in some laths. The microstructure of granular bainite increased and was coarsened when it devoured the lath bainite continuously. The dislocation density of the bainitic ferrite decreased continuously as Mo{sub 2}C and NbC precipitations were further increasing. The peak value of Snoek decreased continuously in internal friction-temperature spectrum. The peak value of SKK at the surface decreased at first and then increased. The peak value of SKK at the center decreased firstly and then had little change. Besides, the yield strength of the steel increased firstly and then decreased.
Numerical simulation of residual stresses at holes near edges and corners in tempered glass: A parametric study

DEFF Research Database (Denmark)

Pourmoghaddam, Navid; Nielsen, Jens Henrik; Schneider, Jens

2016-01-01

This work presents 3D results of the thermal tempering simulation by the Finite Element Method in order to calculate the residual stresses in the area of the holes near edges and corners of a tem-pered glass plate. A viscoelastic material behavior of the glass is considered for the tempering...... process. The structural relaxation is taken into account using Narayanaswamy’s model. The motiva-tion for this work is to study the effect of the reduction of the hole and edge minimum distances, which are defined according to EN 12150-1. It is the objective of the paper to demonstrate and elucidate...... the influence of the hole and edge distances on the minimal residual compressive stress-es at holes after the tempering process. The residual stresses in the area of the holes are calculat-ed varying the following parameters: the hole diameter, the plate thickness and the interaction between holes and edges...
Effect of tempering on corrosion resistance of cast aluminium bronzes

International Nuclear Information System (INIS)

Aaltonen, P.; Klemetti, K.; Haenninen, H.

1985-01-01

The subject of this study is corrosion resistance of aluminium bronzes, which are copper base alloys containing aluminium up to 12% with additions of nickel, iron and manganese. The main conclutions that can be drawn are: (1) The dealloying corrosion resistance of nickel-aluminium bronze is much better than that of aluminium bronze with iron and manganese additions, but it is not immune; (2) The dealloying corrosion resistance of aluminium bronzes can be improved by appropiate heat treatments. The best properties were obtained by temperering between 600 and 800 deg C, depending on the initial microstructure; (3) In crevice conditions, where local acidification can occur, dealloying of aluminium bronzes is a consequence of the preferential attack of aluminium-rich phases. By appropriate tempering, a uniform distribution of aluminium-rich phases is obtained and the continous path for selective corrosion is not formed
High-light acclimation in Quercus robur L.seedlings upon over-topped a shaded environment

Science.gov (United States)

Anna M. Jensen; Emile S. Gardiner; Kevin C. Vaughn

2012-01-01

High developmental plasticity at the seedling-level during acclimation to the light environment may be an important determinant of seedling establishment and growth in temperate broadleaf forests, especially in dense understories where spatial light availability can vary greatly. Pedunculate oak (Quercus robur L.) seedlings were raised beneath a...
Tempered Water Lower Port Connector Structural Analysis Verification

International Nuclear Information System (INIS)

CREA, B.A.

2000-01-01

Structural analysis of the lower port connection of the Tempered Water System of the Cold Vacuum Drying Facility was performed. Subsequent detailed design changes to enhance operability resulted in the need to re-evaluate the bases of the original analysis to verify its continued validity. This evaluation is contained in Appendix A of this report. The original evaluation is contained in Appendix B
Effect of tempering temperature on the microstructure and mechanical properties of a reactor pressure vessel steel

Energy Technology Data Exchange (ETDEWEB)

Li, C.W.; Han, L.Z.; Luo, X.M.; Liu, Q.D.; Gu, J.F., E-mail: gujf@sjtu.edu.cn

2016-08-15

The microstructure and mechanical properties of reactor pressure vessel (RPV) steel were investigated after tempering at different temperatures ranging from 580 to 700 °C for 5 h. With increasing tempering temperature, the impact toughness, which is qualified by Charpy V-notch total absorbed energy, initially increases from 142 to 252 J, and then decreases to 47 J, with a maximum value at 650 °C, while the ultimate tensile strength varies in exactly the opposite direction. Comparing the microstructure and fracture surfaces of different specimens, the variations in toughness and strength with the tempering temperature were generally attributed to the softening of the bainitic ferrite, the agminated Fe{sub 3}C carbides that resulted from decomposition of martensite/austenite (M/A) constituents, the precipitation of Mo{sub 2}C carbides, and the newly formed M/A constituents at the grain boundaries. Finally, the correlation between the impact toughness and the volume fraction of the M/A constituents was established, and the fracture mechanisms for the different tempering conditions are explained. - Highlights: • The dependence of the deterioration of impact toughness on tempering temperature has been analysed. • The instrumented Charpy V-notch impact test has been employed to study the fracture mechanism. • The influence of M/A constituents on different fracture mechanisms based on the hinge model has been demonstrated. • A correlation between the mechanical properties and the amount of M/A constituents has been established.
Impacts of short-term heatwaves on sun-induced chlorophyll fluorescence(SiF) in temperate tree species

Science.gov (United States)

Wang, F.; Gu, L.; Guha, A.; Han, J.; Warren, J.

2017-12-01

The current projections for global climate change forecast an increase in the intensity and frequency of extreme climatic events, such as droughts and short-term heat waves. Understanding the effects of short-term heat wave on photosynthesis process is of critical importance to predict global impacts of extreme weather event on vegetation. The diurnal and seasonal characteristics of SIF emitted from natural vegetation, e.g., forest and crop, have been studied at the ecosystem-scale, regional-scale and global-scale. However, the detailed response of SIF from different plant species under extremely weather event, especially short-term heat wave, have not been reported. The purpose of this study was to study the response of solar-induced chlorophyll fluorescence, gas exchange and continuous fluorescence at leaf scale for different temperate tree species. The short-term heatwave experiment was conducted using plant growth chamber (CMP6050, Conviron Inc., Canada). We developed an advanced spectral fitting method to obtain the plant SIF in the plant growth chamber. We compared SIF variation among different wavelength and chlorophyll difference among four temperate tree species. The diurnal variation of SIF signals at leaf-scales for temperate tree species are different under heat stress. The SIF response at leaf-scales and their difference for four temperate tree species are different during a cycle of short-term heatwave stress. We infer that SIF be used as a measure of heat tolerance for temperate tree species.
IoT enabled aquatic drone for environment monitoring

OpenAIRE

Matos, João Ricardo Baptista de

2016-01-01

This thesis presents a platform that tackles environment monitoring by using air and water quality sensors to provide data for the user to know what is happening in that surveilled area. The hardware is incorporated in a sensing module in order to be used with an Unmanned Surface Vehicle (USV). It presents a monitoring system based on Raspberry Pi platform and a multichannel sensing module associated with water quality and air quality measurement parameters. Thus, the temper...
Uncertainty estimation of predictions of peptides' chromatographic retention times in shotgun proteomics.

Science.gov (United States)

Maboudi Afkham, Heydar; Qiu, Xuanbin; The, Matthew; Käll, Lukas

2017-02-15

Liquid chromatography is frequently used as a means to reduce the complexity of peptide-mixtures in shotgun proteomics. For such systems, the time when a peptide is released from a chromatography column and registered in the mass spectrometer is referred to as the peptide's retention time . Using heuristics or machine learning techniques, previous studies have demonstrated that it is possible to predict the retention time of a peptide from its amino acid sequence. In this paper, we are applying Gaussian Process Regression to the feature representation of a previously described predictor E lude . Using this framework, we demonstrate that it is possible to estimate the uncertainty of the prediction made by the model. Here we show how this uncertainty relates to the actual error of the prediction. In our experiments, we observe a strong correlation between the estimated uncertainty provided by Gaussian Process Regression and the actual prediction error. This relation provides us with new means for assessment of the predictions. We demonstrate how a subset of the peptides can be selected with lower prediction error compared to the whole set. We also demonstrate how such predicted standard deviations can be used for designing adaptive windowing strategies. lukas.kall@scilifelab.se. Our software and the data used in our experiments is publicly available and can be downloaded from https://github.com/statisticalbiotechnology/GPTime . © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com

Structural Analysis of Unsaturated Glycosphingolipids Using Shotgun Ozone-Induced Dissociation Mass Spectrometry

Science.gov (United States)

Barrientos, Rodell C.; Vu, Ngoc; Zhang, Qibin

2017-08-01

Glycosphingolipids are essential biomolecules widely distributed across biological kingdoms yet remain relatively underexplored owing to both compositional and structural complexity. While the glycan head group has been the subject of most studies, there is paucity of reports on the lipid moiety, particularly the location of unsaturation. In this paper, ozone-induced dissociation mass spectrometry (OzID-MS) implemented in a traveling wave-based quadrupole time-of-flight (Q-ToF) mass spectrometer was applied to study unsaturated glycosphingolipids using shotgun approach. Resulting high resolution mass spectra facilitated the unambiguous identification of diagnostic OzID product ions. Using [M+Na]+ adducts of authentic standards, we observed that the long chain base and fatty acyl unsaturation had distinct reactivity with ozone. The reactivity of unsaturation in the fatty acyl chain was about 8-fold higher than that in the long chain base, which enables their straightforward differentiation. Influence of the head group, fatty acyl hydroxylation, and length of fatty acyl chain on the oxidative cleavage of double bonds was also observed. Application of this technique to bovine brain galactocerebrosides revealed co-isolated isobaric and regioisomeric species, which otherwise would be incompletely identified using contemporary collision-induced dissociation (CID) alone. These results highlight the potential of OzID-MS in glycosphingolipids research, which not only provides complementary structural information to existing CID technique but also facilitates de novo structural determination of these complex biomolecules. [Figure not available: see fulltext.
Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment.

Science.gov (United States)

Hsu, Tiffany; Joice, Regina; Vallarino, Jose; Abu-Ali, Galeb; Hartmann, Erica M; Shafquat, Afrah; DuLong, Casey; Baranowski, Catherine; Gevers, Dirk; Green, Jessica L; Morgan, Xochitl C; Spengler, John D; Huttenhower, Curtis

2016-01-01

Public transit systems are ideal for studying the urban microbiome and interindividual community transfer. In this study, we used 16S amplicon and shotgun metagenomic sequencing to profile microbial communities on multiple transit surfaces across train lines and stations in the Boston metropolitan transit system. The greatest determinant of microbial community structure was the transit surface type. In contrast, little variation was observed between geographically distinct train lines and stations serving different demographics. All surfaces were dominated by human skin and oral commensals such as Propionibacterium , Corynebacterium , Staphylococcus , and Streptococcus . The detected taxa not associated with humans included generalists from alphaproteobacteria, which were especially abundant on outdoor touchscreens. Shotgun metagenomics further identified viral and eukaryotic microbes, including Propionibacterium phage and Malassezia globosa . Functional profiling showed that Propionibacterium acnes pathways such as propionate production and porphyrin synthesis were enriched on train holding surfaces (holds), while electron transport chain components for aerobic respiration were enriched on touchscreens and seats. Lastly, the transit environment was not found to be a reservoir of antimicrobial resistance and virulence genes. Our results suggest that microbial communities on transit surfaces are maintained from a metapopulation of human skin commensals and environmental generalists, with enrichments corresponding to local interactions with the human body and environmental exposures. IMPORTANCE Mass transit environments, specifically, urban subways, are distinct microbial environments with high occupant densities, diversities, and turnovers, and they are thus especially relevant to public health. Despite this, only three culture-independent subway studies have been performed, all since 2013 and all with widely differing designs and conclusions. In this study, we
Metallurgical/Alloy Optimization of High Strength and Wear Resistant Structural Quench and Tempered Steels

Science.gov (United States)

Stalheim, Douglas G.; Peimao, Fu; Linhao, Gu; Yongqing, Zhang

Structural steels with yield strength requirements greater or equal to 690 MPa can be produced through controlled recrystallization hot rolling coupled with precipitation strengthening or purposeful heat treatment through quench and tempering (Q&T). High strength structural steel and wear/abrasion resistant requirements greater or equal to 360 Brinell hardness (BHN) are produced by the development of microstructures of tempered lower bainite and/or martensite through the Q&T process. While these Q&T microstructures can produce very high strengths and hardness levels making them ideal for 690 MPa plus yield strength or wear/abrasion resistant applications, they lack toughness/ductility and hence are very brittle and prone to cracking. While tempering the microstructures helps in improving the toughness/ductility and reducing the brittleness, strength and hardness can be sacrificed. In addition, these steels typically consist of alloy designs containing boron with carbon equivalents (CE) greater than 0.50 to achieve the desired microstructures. The higher CE has a negative influence on weldability.
The interaction between freezing tolerance and phenology in temperate deciduous trees

Directory of Open Access Journals (Sweden)

Yann eVitasse

2014-10-01

Full Text Available Temperate climates are defined by a distinct temperature seasonality with large and often unpredictable weather during any of the four seasons. To thrive in such climates, trees have to withstand a cold winter and the stochastic occurrence of freeze events during any time of the year. The physiological mechanisms trees adopt to escape, avoid and tolerate freezing temperatures include a cold acclimation in autumn, a dormancy period during winter (leafless in deciduous trees, and the maintenance of a certain freezing tolerance during dehardening in early spring. The change from one phase to the next is mediated by complex interactions between temperature and photoperiod. This review aims at providing an overview of the interplay between phenology of leaves and species-specific freezing resistance. First, we address the long-term evolutionary responses that enabled temperate trees to tolerate certain low temperature extremes. We provide evidence that short term acclimation of freezing resistance plays a crucial role both in dormant and active buds, including re-acclimation to cold conditions following warm spells. This ability declines to almost zero during leaf emergence. Second, we show that the risk that native temperate trees encounter freeze injuries is low and is confined to spring and underline that this risk might be altered by climate warming depending on species-specific phenological responses to environmental cues.
Effect of Tempering Temperature on the Microstructure and Properties of Fe-2Cr-Mo-0.12C Pressure Vessel Steel

Science.gov (United States)

Wang, Qi-wen; Li, Chang-sheng; Peng, Huan; Chen, Jie; Zhang, Jian

2018-03-01

To obtain the high-temperature strength and toughness of the medium-high-temperature-pressure steel, the microstructure evolution and mechanical properties of Fe-2Cr-Mo-0.12C steel subjected to three different tempering temperatures after being normalized were investigated. The results show that the microstructure of the sample, tempered in the range 675-725 °C for 50 min, did not change dramatically, yet the martensite/austenite constituents decomposed, and the bainite lath merged together and transformed into polygonal ferrite. At the same time, the precipitate size increased with an increase in tempering temperature. With the increase in the tempering temperature from 675 to 725 °C, the impact absorbed energy of the Fe-2Cr-Mo-0.12C steel at -40 °C increased from 257 to 325 J, and the high-temperature yield strength decreased; however, the high-temperature ultimate tensile strength tempered at 700 °C was outstanding (422-571 MPa) at different tested temperatures. The variations of the properties were attributed to the decomposition of M/A constituents and the coarsening of the precipitates. Fe-2Cr-Mo-0.12C steel normalized at 930 °C and tempered at 700 °C was found to have the best combination of ductility and strength.
Effects of tempering temperature on microstructural evolution and mechanical properties of high-strength low-alloy D6AC plasma arc welds

Energy Technology Data Exchange (ETDEWEB)

Lin, Chun-Ming, E-mail: chunming@ntut.edu.tw [Department of Mechanical Engineering, National Taipei University of Technology, Taipei 10608, Taiwan (China); Lu, Chi-Hao [Department of Mechanical Engineering, National Taiwan University of Science and Technology, Taipei 10673, Taiwan (China)

2016-10-31

This study prepared high-strength low-alloy (HSLA) D6AC weldments using a plasma arc welding (PAW) process. The PAW weldments were then tempered at temperatures of 300 °C, 450 °C, and 600 °C for 1000 min. Microstructural characteristics of the weld in as-welded HSLA-D6AC, tempered D6AC, and tensile-tested D6AC were observed via optical microscopy (OM). We also investigated the hardness, tensile strength, and V-notched tensile strength (NTS) of the tempered specimens using a Vickers hardness tester and a universal testing machine. The fracture surfaces of the specimens were observed using a scanning electron microscope (SEM). Our results show that the mechanical properties and microstructural features of the HSLA weldments are strongly dependent on tempering temperature. An increase in tempering temperature led to a decrease in the hardness and tensile strength of the weldments but led to an increase in ductility. These effects can be attributed to the transformation of the microstructure and its effect on fracture characteristics. The specimens tempered at 300 °C and 450 °C failed in a ductile-brittle manner due to the presence of inter-lath austenite in the microstructure. After tempering at a higher temperature of 600 °C, martensite embrittlement did not occur, such that specimens failure was predominantly in a ductile manner. In the NTS specimens, an increase in tempering temperature led to a reduction in tensile strength due to notch embrittlement and the effects of grain boundary thickening and sliding. Our findings provide a valuable reference for the application of HSLA-D6AC steel in engineering and other fields.
Interspecific variation in total phenolic content in temperate brown algae

Directory of Open Access Journals (Sweden)

Anna Maria Mannino

2017-09-01

Full Text Available Marine algae synthesize secondary metabolites such as polyphenols that function as defense and protection mechanisms. Among brown algae, Fucales and Dictyotales (Phaeophyceae contain the highest levels of phenolic compounds, mainly phlorotannins, that play multiple roles. Four temperate brown algae (Cystoseira amentacea, Cystoseira compressa, Dictyopteris polypodioides and Padina pavonica were studied for total phenolic contents. Total phenolic content was determined colorimetrically with the Folin-Ciocalteu reagent. Significant differences in total phenolic content were observed between leathery and sheetlike algae and also within each morphological group. Among the four species, the sheet-like alga D. polypodioides, living in the upper infralittoral zone, showed the highest concentration of phenolic compounds. These results are in agreement with the hypothesis that total phenolic content in temperate brown algae is influenced by a combination of several factors, such as growth form, depth, and exposition to solar radiation.
Groundwater flow and transport modelling during the temperate period for the SR-Can assessment. Laxemar subarea - version 1.2

Energy Technology Data Exchange (ETDEWEB)

Hartley, Lee; Hoch, Andrew; Jackson, Peter; Joyce, Steve; McCarthy, Rachel; Swift, Ben [Serco Assurance, Harwell (United Kingdom); Gylling, Bjoern; Marsic, Niko [Kemakta Konsult AB, Stockholm (Sweden)

2006-12-15

The focus of the study described in this report has been to perform numerical simulations of the geosphere from post-closure and throughout the temperate period up until the beginning of the next permafrost period at around 20,000 AD for the Laxemar area. Together with providing quantitative results for the immediate temperate period following post-closure, these results are also intended to give a qualitative indication of the evolution of the groundwater system during future temperate periods within an ongoing cycle of glacial/inter-glacial events.
Nematode spatial and ecological patterns from tropical and temperate rainforests.

Directory of Open Access Journals (Sweden)

Dorota L Porazinska

Full Text Available Large scale diversity patterns are well established for terrestrial macrobiota (e.g. plants and vertebrates, but not for microscopic organisms (e.g. nematodes. Due to small size, high abundance, and extensive dispersal, microbiota are assumed to exhibit cosmopolitan distributions with no biogeographical patterns. This assumption has been extrapolated from local spatial scale studies of a few taxonomic groups utilizing morphological approaches. Recent molecularly-based studies, however, suggest something quite opposite. Nematodes are the most abundant metazoans on earth, but their diversity patterns are largely unknown. We conducted a survey of nematode diversity within three vertical strata (soil, litter, and canopy of rainforests at two contrasting latitudes in the North American meridian (temperate: the Olympic National Forest, WA, U.S.A and tropical: La Selva Biological Station, Costa Rica using standardized sampling designs and sample processing protocols. To describe nematode diversity, we applied an ecometagenetic approach using 454 pyrosequencing. We observed that: 1 nematode communities were unique without even a single common species between the two rainforests, 2 nematode communities were unique among habitats in both rainforests, 3 total species richness was 300% more in the tropical than in the temperate rainforest, 4 80% of the species in the temperate rainforest resided in the soil, whereas only 20% in the tropics, 5 more than 90% of identified species were novel. Overall, our data provided no support for cosmopolitanism at both local (habitats and large (rainforests spatial scales. In addition, our data indicated that biogeographical patterns typical of macrobiota also exist for microbiota.
Nematode Spatial and Ecological Patterns from Tropical and Temperate Rainforests

Science.gov (United States)

Porazinska, Dorota L.; Giblin-Davis, Robin M.; Powers, Thomas O.; Thomas, W. Kelley

2012-01-01

Large scale diversity patterns are well established for terrestrial macrobiota (e.g. plants and vertebrates), but not for microscopic organisms (e.g. nematodes). Due to small size, high abundance, and extensive dispersal, microbiota are assumed to exhibit cosmopolitan distributions with no biogeographical patterns. This assumption has been extrapolated from local spatial scale studies of a few taxonomic groups utilizing morphological approaches. Recent molecularly-based studies, however, suggest something quite opposite. Nematodes are the most abundant metazoans on earth, but their diversity patterns are largely unknown. We conducted a survey of nematode diversity within three vertical strata (soil, litter, and canopy) of rainforests at two contrasting latitudes in the North American meridian (temperate: the Olympic National Forest, WA, U.S.A and tropical: La Selva Biological Station, Costa Rica) using standardized sampling designs and sample processing protocols. To describe nematode diversity, we applied an ecometagenetic approach using 454 pyrosequencing. We observed that: 1) nematode communities were unique without even a single common species between the two rainforests, 2) nematode communities were unique among habitats in both rainforests, 3) total species richness was 300% more in the tropical than in the temperate rainforest, 4) 80% of the species in the temperate rainforest resided in the soil, whereas only 20% in the tropics, 5) more than 90% of identified species were novel. Overall, our data provided no support for cosmopolitanism at both local (habitats) and large (rainforests) spatial scales. In addition, our data indicated that biogeographical patterns typical of macrobiota also exist for microbiota. PMID:22984536
Carbon sequestration in managed temperate coniferous forests under climate change

Science.gov (United States)

Dymond, Caren C.; Beukema, Sarah; Nitschke, Craig R.; Coates, K. David; Scheller, Robert M.

2016-03-01

Management of temperate forests has the potential to increase carbon sinks and mitigate climate change. However, those opportunities may be confounded by negative climate change impacts. We therefore need a better understanding of climate change alterations to temperate forest carbon dynamics before developing mitigation strategies. The purpose of this project was to investigate the interactions of species composition, fire, management, and climate change in the Copper-Pine Creek valley, a temperate coniferous forest with a wide range of growing conditions. To do so, we used the LANDIS-II modelling framework including the new Forest Carbon Succession extension to simulate forest ecosystems under four different productivity scenarios, with and without climate change effects, until 2050. Significantly, the new extension allowed us to calculate the net sector productivity, a carbon accounting metric that integrates aboveground and belowground carbon dynamics, disturbances, and the eventual fate of forest products. The model output was validated against literature values. The results implied that the species optimum growing conditions relative to current and future conditions strongly influenced future carbon dynamics. Warmer growing conditions led to increased carbon sinks and storage in the colder and wetter ecoregions but not necessarily in the others. Climate change impacts varied among species and site conditions, and this indicates that both of these components need to be taken into account when considering climate change mitigation activities and adaptive management. The introduction of a new carbon indicator, net sector productivity, promises to be useful in assessing management effectiveness and mitigation activities.
Endemic shrubs in temperate arid and semiarid regions of northern China and their potentials for rangeland restoration.

Science.gov (United States)

Chu, Jianmin; Yang, Hongxiao; Lu, Qi; Zhang, Xiaoyan

2015-06-03

Some endemic shrubs in arid and semiarid ecosystems are in danger of extinction, and yet they can play useful roles in maintaining or restoring these ecosystems, thus practical efforts are needed to conserve them. The shrubs Amygdalus pedunculata Pall., Amygdalus mongolica (Maxim.) Ricker and Ammopiptanthus mongolicus (Maxim. ex Kom.) Cheng f. are endemic species in arid and semiarid regions of northern China, where rangeland desertification is pronounced due to chronic overgrazing. In this study, we tested the hypothesis that these endemic shrubs have developed adaptations to arid and semiarid environments and could play critical roles as nurse species to initiate the process of rangeland recovery. Based on careful vegetation surveys, we analysed the niches of these species in relation to precipitation, temperature and habitats. All sampling plots were categorized by these endemics and sorted by the non-metric multidimensional scaling method. Species ratios of each life form and species co-occurrence rates with the endemics were also evaluated. Annual average temperature and annual precipitation were found to be the key factors determining vegetation diversity and distributions. Amygdalus pedunculata prefers low hills and sandy land in temperate semiarid regions. Amygdalus mongolica prefers gravel deserts of temperate semiarid regions. Ammopiptanthus mongolicus prefers sandy land of temperate arid regions. Communities of A. pedunculata have the highest diversity and the largest ratios of long-lived grass species, whereas those of A. mongolicus have the lowest diversity but the largest ratios of shrub species. Communities of A. mongolica are a transition between the first two community types. These findings demonstrate that our focal endemic shrubs have evolved adaptations to arid and semiarid conditions, thus they can be nurse plants to stabilize sand ground for vegetation restoration. We suggest that land managers begin using these shrub species to restore
Trichinella in arctic, subarctic and temperate regions

DEFF Research Database (Denmark)

Kapel, C. M O

1997-01-01

The transmission and occurrence of Trichinella spp according to the zoogeography of different climatic conditions, socioeconomy and human activity are discussed. Comparing arctic, subarctic and temperate regions, it appears that the species of Trichinella present, the composition of the fauna...... and the human activity are all very important interacting factors affecting epidemiology. In Greenland, where only sylvatic trichinellosis is present, the high prevalence in wildlife appears closely connected with polar bear hunting. In the Scandinavian countries, the prevalence of both sylvatic and domestic...
Comparative evaluation of seven commercial products for human serum enrichment/depletion by shotgun proteomics.

Science.gov (United States)

Pisanu, Salvatore; Biosa, Grazia; Carcangiu, Laura; Uzzau, Sergio; Pagnozzi, Daniela

2018-08-01

Seven commercial products for human serum depletion/enrichment were tested and compared by shotgun proteomics. Methods were based on four different capturing agents: antibodies (Qproteome Albumin/IgG Depletion kit, ProteoPrep Immunoaffinity Albumin and IgG Depletion Kit, Top 2 Abundant Protein Depletion Spin Columns, and Top 12 Abundant Protein Depletion Spin Columns), specific ligands (Albumin/IgG Removal), mixture of antibodies and ligands (Albumin and IgG Depletion SpinTrap), and combinatorial peptide ligand libraries (ProteoMiner beads), respectively. All procedures, to a greater or lesser extent, allowed an increase of identified proteins. ProteoMiner beads provided the highest number of proteins; Albumin and IgG Depletion SpinTrap and ProteoPrep Immunoaffinity Albumin and IgG Depletion Kit resulted the most efficient in albumin removal; Top 2 and Top 12 Abundant Protein Depletion Spin Columns decreased the overall immunoglobulin levels more than other procedures, whereas specifically gamma immunoglobulins were mostly removed by Albumin and IgG Depletion SpinTrap, ProteoPrep Immunoaffinity Albumin and IgG Depletion Kit, and Top 2 Abundant Protein Depletion Spin Columns. Albumin/IgG Removal, a resin bound to a mixture of protein A and Cibacron Blue, behaved less efficiently than the other products. Copyright © 2018 Elsevier B.V. All rights reserved.
Cloud CPFP: a shotgun proteomics data analysis pipeline using cloud and high performance computing.

Science.gov (United States)

Trudgian, David C; Mirzaei, Hamid

2012-12-07

We have extended the functionality of the Central Proteomics Facilities Pipeline (CPFP) to allow use of remote cloud and high performance computing (HPC) resources for shotgun proteomics data processing. CPFP has been modified to include modular local and remote scheduling for data processing jobs. The pipeline can now be run on a single PC or server, a local cluster, a remote HPC cluster, and/or the Amazon Web Services (AWS) cloud. We provide public images that allow easy deployment of CPFP in its entirety in the AWS cloud. This significantly reduces the effort necessary to use the software, and allows proteomics laboratories to pay for compute time ad hoc, rather than obtaining and maintaining expensive local server clusters. Alternatively the Amazon cloud can be used to increase the throughput of a local installation of CPFP as necessary. We demonstrate that cloud CPFP allows users to process data at higher speed than local installations but with similar cost and lower staff requirements. In addition to the computational improvements, the web interface to CPFP is simplified, and other functionalities are enhanced. The software is under active development at two leading institutions and continues to be released under an open-source license at http://cpfp.sourceforge.net.
Effect of tempering temperature on microstructure and sliding wear property of laser quenched 4Cr13 steel

NARCIS (Netherlands)

Ouyang, J.H.; Pei, Y.T.; Li, X.D.; Lei, T.C.

1994-01-01

4Cr13 martensite stainless steel was quenched by a CO2 laser and tempered for 2 h at different temperatures in the range 200 °C to 550 °C. The microstructure of treated layer was observed by SEM, XRD and TEM. Tempering leads to the decomposition of a large number of retained austenites in laser
Quantifying the effects of tempering on individual phase properties of DP980 steel with nanoindentation

Energy Technology Data Exchange (ETDEWEB)

Cheng, G. [Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, P.O. Box 999, Richland, WA (United States); Zhang, F. [School of Mechanical and Materials Engineering, Washington State University, Pullman, WA (United States); Ruimi, A. [Department of Mechanical Engineering, Texas A& M University, Doha (Qatar); Field, D.P. [School of Mechanical and Materials Engineering, Washington State University, Pullman, WA (United States); Sun, X., E-mail: xin.sun@pnnl.gov [Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, P.O. Box 999, Richland, WA (United States)

2016-06-14

Tempering treatment is conducted on a commercial dual phase (DP) 980 steel at 250 °C and 400 °C for 60 min each. Ferrite and martensite grains are distinguished using electron backscatter diffraction (EBSD) and scanning probe microscopy (SPM), and the martensite volume fractions (MVF) are determined based on the image quality (IQ) map. Indentation tests combined with a newly developed inverse method are used to obtain the individual phase flow properties in each sample. The results show that, i) tempering significantly reduces martensite yield strength, while it slightly reduces the ferrite yield strength; ii) tempering temperature has a more significant influence on the work hardening exponent of ferrite than that of martensite. As a validation, a simple rule-of-mixtures is used to verify the above-predicted individual phase flow stresses with the experimentally obtained overall true stress vs. true strain curves.
A comparison of PCB bioaccumulation factors between an arctic and a temperate marine food web.

Science.gov (United States)

Sobek, Anna; McLachlan, Michael S; Borgå, Katrine; Asplund, Lillemor; Lundstedt-Enkel, Katrin; Polder, Anuschka; Gustafsson, Orjan

2010-06-01

To test how environmental conditions in the Arctic and the resulting ecological adaptations affect accumulation of persistent organic pollutants (POPs) in the marine food web, bioaccumulation of four polychlorinated biphenyls (PCBs) in an arctic (Barents Sea 77 degrees N-82 degrees N) and a temperate marine (Baltic Sea 54 degrees N-62 degrees N) food web were compared. Three different trophic levels were studied (zooplankton, fish, and seal), representing the span from first-level consumer to top predator. Previously published high-quality data on PCB water concentrations in the two areas were used for calculation of bioaccumulation factors (BAF). BAF was calculated as the ratio of the PCB concentration in the organism ([PCB](org); pg/kg lipid) to the dissolved water concentration (C(w); pg/L). The BAF(Arctic):BAF(Temperate) ratios were above 1 for all four PCB congeners in zooplankton (6.4-13.8) and planktivorous fish (2.9-5.0)), whereas the ratios were below 1 in seal. The mean ratio between arctic and temperate BAFs for all trophic levels and congeners (BAF(Arcti):BAF(Temperate)) was 4.8. When the data were corrected for the seawater temperature difference between the two ecosystems, the ratio was 2.0. We conclude that bioaccumulation differences caused by ecological or physiological adaptations of organisms between the two ecosystems were well within a water concentration variability of 50%. Further, our data support the hypothesis that lower seawater temperature lead to a thermodynamically favoured passive partitioning to organic matrices and thus elevated ambient BAFs in the Arctic compared to the Baltic Sea. This would imply that bioaccumulation in the Arctic may be described in the same way as bioaccumulation in temperate regions, e.g. by the use of mechanistic models parameterised for the Arctic. Copyright (c) 2010. Published by Elsevier B.V.
A comparison of PCB bioaccumulation factors between an arctic and a temperate marine food web

International Nuclear Information System (INIS)

Sobek, Anna; McLachlan, Michael S.; Borga, Katrine; Asplund, Lillemor; Lundstedt-Enkel, Katrin; Polder, Anuschka; Gustafsson, Orjan

2010-01-01

To test how environmental conditions in the Arctic and the resulting ecological adaptations affect accumulation of persistent organic pollutants (POPs) in the marine food web, bioaccumulation of four polychlorinated biphenyls (PCBs) in an arctic (Barents Sea 77 o N-82 o N) and a temperate marine (Baltic Sea 54 o N-62 o N) food web were compared. Three different trophic levels were studied (zooplankton, fish, and seal), representing the span from first-level consumer to top predator. Previously published high-quality data on PCB water concentrations in the two areas were used for calculation of bioaccumulation factors (BAF). BAF was calculated as the ratio of the PCB concentration in the organism ([PCB] org ; pg/kg lipid) to the dissolved water concentration (C w ; pg/L). The BAF Arctic :BAF Temperate ratios were above 1 for all four PCB congeners in zooplankton (6.4-13.8) and planktivorous fish (2.9-5.0)), whereas the ratios were below 1 in seal. The mean ratio between arctic and temperate BAFs for all trophic levels and congeners (BAF Arcti :BAF Temperate ) was 4.8. When the data were corrected for the seawater temperature difference between the two ecosystems, the ratio was 2.0. We conclude that bioaccumulation differences caused by ecological or physiological adaptations of organisms between the two ecosystems were well within a water concentration variability of 50%. Further, our data support the hypothesis that lower seawater temperature lead to a thermodynamically favoured passive partitioning to organic matrices and thus elevated ambient BAFs in the Arctic compared to the Baltic Sea. This would imply that bioaccumulation in the Arctic may be described in the same way as bioaccumulation in temperate regions, e.g. by the use of mechanistic models parameterised for the Arctic.
Microstructural, mechanical and tribological investigation of 30CrMnSiNi2A ultra-high strength steel under various tempering temperatures

Science.gov (United States)

Arslan Hafeez, Muhammad; Farooq, Ameeq

2018-01-01

The aim of the research was to investigate the variation in microstructural, mechanical and tribological characteristics of 30CrMnSiNi2A ultra-high strength steel as a function of tempering temperatures. Steel was quenched at 880 °C and tempered at five different tempering temperatures ranging from 250 °C to 650 °C. Optical microscopy and pin on disc tribometer was used to evaluate the microstructural and wear properties. Results show that characteristics of 30CrMnSiNi2A are highly sensitive to tempering temperatures. Lathe and plate shaped martensite obtained by quenching transform first into ε-carbide, second cementite, third coarsened and spheroidized cementite and finally into recovered ferrite and austenite. Hardness, tensile and yield strengths decreased while elongation increased with tempering temperatures. On the other hand, wear rate first markedly decreased and then increased. Optimum amalgamation of characteristics was achieved at 350 °C.

Effect of deep cryogenic treatment and tempering on microstructure and mechanical behaviors of a wear-resistant austempered alloyed bainitic ductile iron

Directory of Open Access Journals (Sweden)

Chen Liqing

2015-01-01

Full Text Available In this paper, the effect of deep cryogenic treatment in combination with conven- tional heat treatment process was investigated on microstructure and mechanical behaviors of alloyed bainitic ductile iron. Three processing schedules were employed to treat this alloyed ductile iron including direct tempering treatment, tempering.+deep cryogenic treatment and deep cryogenic treatment.+tempering treatments. The microstructure and mechanical behavior, especially the wear resistance, have been evaluated after treated by these three schedules. The results show that martensite microstructure can be obviously refined and the precipitation of dispersed carbides is promoted by deep cryogenic treatment at .−196 ∘C for 3 h after tempered at 450 ∘C for 2 h. In this case, the alloyed bainitic ductile iron possesses rather high hardness and wear-resistance than those processed by other two schedules. The main wear mechanism of the austempered alloyed ductile iron with deep cryogenic treatment and tempering is micro-cutting wear in association with plastic deformation wear.
Crown-To-Rhizosphere Carbon Transfer In A Temperate Mixed Forest

Science.gov (United States)

Siegwolf, R. T.; Steinmann, K.; Saurer, M.; Koerner, C.

2005-12-01

-scale forest girdling shows that current photosynthesis drives soil respiration. Nature, 411 (6839): 789-792. Pepin, S and Koerner C (2002). Web-FACE: a new canopy free-air CO2 enrichment system for tall trees in mature forests. Oecologia 133(1): 1-9. Janssens IA et al (2001) Productivity overshadows temperature in determining soil and ecosystem respiration across European forests. Global Change Biol 7:269-278 Malhi Y, Baldocchi DD, Jarvis PG (1999) The carbon balance of tropical, temperate and boreal forests. Plant Cell Environ 22:715-740 Koerner C, Asshoff R., Bignucolo O, Haettenschwiler S., Keel SG., Pela'ez-Riedl S., Pepin S, Siegwolf RTW., Zotz G. (2005). Carbon Flux and Growth in Mature Deciduous Forest Trees Exposed to Elevated CO2. Science, Vol. 309/Nr. 5739, pp. 1360-1362. Steinmann K., Siegwolf RTW, Saurer M., Koerner C. (2004) Carbon fluxes to the soil in a mature temperate forest assessed by 13C isotope tracing. Oecologia 141: 489-501
Breeding limits foraging time : Evidence of interrupted foraging response from body mass variation in a tropical environment

NARCIS (Netherlands)

Nwaogu, Chima J.; Dietz, Maurine W.; Tieleman, B. Irene; Cresswell, Will

Birds should store body reserves if starvation risk is anticipated; this is known as an ‘interrupted foraging response’. If foraging remains unrestricted, however, body mass should remain low to limit the predation risk that gaining and carrying body reserves entails. In temperate environments mass
Investigation of the Microstructural Changes and Hardness Variations of Sub-Zero Treated Cr-V Ledeburitic Tool Steel Due to the Tempering Treatment

Science.gov (United States)

Jurči, Peter; Dománková, Mária; Ptačinová, Jana; Pašák, Matej; Kusý, Martin; Priknerová, Petra

2018-03-01

The microstructure and tempering response of Cr-V ledeburitic steel Vanadis 6 subjected to sub-zero treatment at - 196 °C for 4 h have been examined with reference to the same steel after conventional heat treatment. The obtained experimental results infer that sub-zero treatment significantly reduces the retained austenite amount, makes an overall refinement of microstructure, and induces a significant increase in the number and population density of small globular carbides with a size 100-500 nm. At low tempering temperatures, the transient M3C-carbides precipitated, whereas their number was enhanced by sub-zero treatment. The presence of chromium-based M7C3 precipitates was evidenced after tempering at the temperature of normal secondary hardening; this phase was detected along with the M3C. Tempering above 470 °C converts almost all the retained austenite in conventionally quenched specimens while the transformation of retained austenite is rather accelerated in sub-zero treated material. As a result of tempering, a decrease in the population density of small globular carbides was recorded; however, the number of these particles retained much higher in sub-zero treated steel. Elevated hardness of sub-zero treated steel can be referred to more completed martensitic transformation and enhanced number of small globular carbides; this state is retained up to a tempering temperature of around 500 °C in certain extent. Correspondingly, lower as-tempered hardness of sub-zero treated steel tempered above 500 °C is referred to much lower contribution of the transformation of retained austenite, and to an expectedly lower amount of precipitated alloy carbides.
Application of the DMRG in two dimensions: a parallel tempering algorithm

Science.gov (United States)

Hu, Shijie; Zhao, Jize; Zhang, Xuefeng; Eggert, Sebastian

The Density Matrix Renormalization Group (DMRG) is known to be a powerful algorithm for treating one-dimensional systems. When the DMRG is applied in two dimensions, however, the convergence becomes much less reliable and typically ''metastable states'' may appear, which are unfortunately quite robust even when keeping a very high number of DMRG states. To overcome this problem we have now successfully developed a parallel tempering DMRG algorithm. Similar to parallel tempering in quantum Monte Carlo, this algorithm allows the systematic switching of DMRG states between different model parameters, which is very efficient for solving convergence problems. Using this method we have figured out the phase diagram of the xxz model on the anisotropic triangular lattice which can be realized by hardcore bosons in optical lattices. SFB Transregio 49 of the Deutsche Forschungsgemeinschaft (DFG) and the Allianz fur Hochleistungsrechnen Rheinland-Pfalz (AHRP).
Tempered orbital energies and the potential curve within a molecule

International Nuclear Information System (INIS)

Anno, T.; Sakai, Y.

1979-01-01

It is shown that the sum of the tempered orbital energies behaves much the same way as does the some of the Hartree--Fock orbital energies. The H 2 moluecule in its minimum basis set description is chosen as an example and comparison of orbital energies is carried out
Differences in the physiological responses to temperature among stonechats from three populations reared in a common environment

NARCIS (Netherlands)

Tieleman, B. Irene

The physiological response to variation in air temperature (T-a) can provide insights into how animals are adapted to different environments. I measured metabolic rate, total evaporative water loss (TEWL) and body temperature (T-b) as a function of T. in stonechats from equatorial Kenya, temperate
Characteristic of retained austenite decomposition during tempering and its effect on impact toughness in SA508 Gr.3 steel

Energy Technology Data Exchange (ETDEWEB)

Yan, Guanghua; Han, Lizhan; Li, Chuanwei; Luo, Xiaomeng; Gu, Jianfeng, E-mail: gujf@sjtu.edu.cn

2017-01-15

Retained austenite(RA) usually presents in the quenched Nuclear Pressure-Vessel SA508 Gr.3 steel. In the present work, the characteristic of RA decomposition and its effect on the impact toughness were investigated by microstructure observation, dilatometric experiments and Charpy impact tests. The results show that the RA transformed into martensite and bainite during tempering at 230 °C and 400 °C respectively, while mixture of long rod carbides and ferrite formed at 650 °C. The long rod carbides formed from RA decomposition decrease the critical cleavage stress for initiation of micro-cracks, and deteriorate the impact toughness of the steel. Pre-tempering at a low temperature such as 230 °C or 400 °C leading to the decomposition of RA into martensite or baintie can eliminate the deterioration of the toughness caused by direct decomposition into long rod carbides. The absorbed energy indicate that pre-tempering at 400 °C can drive dramatically improvement in the toughness of the steel. - Highlights: • The products of RA decomposition were localization observed by SEM and TEM. • Decomposition characteristic of RA were revealed during tempering at different temperature. • Impact toughness was dramatically improved by pre-tempering treatment.
Hurricane Impacts to Tropical and Temperate Forest Landscapes

OpenAIRE

Boose, Emery Robert; Foster, David Russell; Fluet, Marcheterre

1994-01-01

Hurricanes represent an important natural disturbance process to tropical and temperate forests in many coastal areas of the world. The complex patterns of damage created in forests by hurricane winds result from the interaction of meteorological, physiographic, and biotic factors on a range of spatial scales. To improve our understanding of these factors and of the role of catastrophic hurricane wind as a disturbance process, we take an integrative approach. A simple meteorological model (HU...
Griswold Tempered Water Flow Regulator Valves Used as Anti-Siphon Valves

International Nuclear Information System (INIS)

MISKA, C.

2000-01-01

FCV-1*22 and 1*23 are Griswold constant flow regulators used as anti-siphon valves in the tempered water system, they fail closed but valve cartridge orifice allows minimum flow to prevent loss of water from the MCO/CASK annulus
Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee Subspecies Apis mellifera sinisxinyuan n. ssp.

Science.gov (United States)

Chen, Chao; Liu, Zhiguang; Pan, Qi; Chen, Xiao; Wang, Huihua; Guo, Haikun; Liu, Shidong; Lu, Hongfeng; Tian, Shilin; Li, Ruiqiang; Shi, Wei

2016-05-01

Studying the genetic signatures of climate-driven selection can produce insights into local adaptation and the potential impacts of climate change on populations. The honey bee (Apis mellifera) is an interesting species to study local adaptation because it originated in tropical/subtropical climatic regions and subsequently spread into temperate regions. However, little is known about the genetic basis of its adaptation to temperate climates. Here, we resequenced the whole genomes of ten individual bees from a newly discovered population in temperate China and downloaded resequenced data from 35 individuals from other populations. We found that the new population is an undescribed subspecies in the M-lineage of A. mellifera (Apis mellifera sinisxinyuan). Analyses of population history show that long-term global temperature has strongly influenced the demographic history of A. m. sinisxinyuan and its divergence from other subspecies. Further analyses comparing temperate and tropical populations identified several candidate genes related to fat body and the Hippo signaling pathway that are potentially involved in adaptation to temperate climates. Our results provide insights into the demographic history of the newly discovered A. m. sinisxinyuan, as well as the genetic basis of adaptation of A. mellifera to temperate climates at the genomic level. These findings will facilitate the selective breeding of A. mellifera to improve the survival of overwintering colonies. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.
Tempered fractional time series model for turbulence in geophysical flows

Science.gov (United States)

Meerschaert, Mark M.; Sabzikar, Farzad; Phanikumar, Mantha S.; Zeleke, Aklilu

2014-09-01

We propose a new time series model for velocity data in turbulent flows. The new model employs tempered fractional calculus to extend the classical 5/3 spectral model of Kolmogorov. Application to wind speed and water velocity in a large lake are presented, to demonstrate the practical utility of the model.
Use of the integration elements encoded by the temperate lactococcal bacteriophage TP901-1

DEFF Research Database (Denmark)

Brøndsted, Lone; Hammer, Karin

1999-01-01

Previously we showed that only one phage-expressed protein (Orf1), a 425-bp region upstream of the orf1 gene (presumably encoding a promoter), and the attP region are necessary and also sufficient for integration of the bacteriophage TP901-1 genome into the chromosome of Lactococcus lactis subsp......P region seem to be necessary for site-specific integration of the temperate bacteriophage TP901-1. By use of the integrative elements (attP and orf1) expressed by the temperate lactococcal bacteriophage TP901-1, a system for obtaining stable chromosomal single-copy transcriptional fusions in L. lactis...
Possibilities for using higher-tensile, water quenched and tempered AlSiMn fine-grained structural steel for reactor containments

International Nuclear Information System (INIS)

Wallner, F.

1976-01-01

On water quenching and tempering of weldable AlSiMn structural steels, particularly the grain refining process is made use of, i.e. that measure with the poorest influence on the weldability of steel. Precipitation hardening due to water quenching is, on subsequent tempering, set off to a large extent by means of precipitation resp. coagulation of iron carbides. Minimum yield points up to 580 N/mm 2 and, simultaneously, good viscosity can be obtained by means of water quenching from austeritic temperature and tempering between 550 0 C and 650 0 C, depending on tempering temperatures and sheet thickness. In the paper at hand, results are given, obtained from tests and experience with the steel Aldur 50/65 (the first figure indicates minimum yield points, the second one minimum tensile strength on sheet thickness up to 30 mm). These results are assumed to be essential, also in connection with the construction and working conditions of nuclear power plants. (orig./RW) [de
Tropical Malaysians and temperate Koreans exhibit significant differences in sweating sensitivity in response to iontophoretically administered acetylcholine

Science.gov (United States)

Lee, Jeong-Beom; Bae, Jun-Sang; Matsumoto, Takaaki; Yang, Hun-Mo; Min, Young-Ki

2009-03-01

Natives of the tropics are able to tolerate high ambient temperatures. This results from their long-term residence in hot and often humid tropical climates. This study was designed to compare the peripheral mechanisms of thermal sweating in tropical natives with that of their temperate counterparts. Fifty-five healthy male subjects including 20 native Koreans who live in the temperate Korean climate (Temperate-N) and 35 native tropical Malaysian men that have lived all of their lives in Malaysia (Tropical-N) were enrolled in this study after providing written informed consent to participate. Quantitative sudomotor axon reflex testing after iontophoresis (2 mA for 5 min) with 10% acetylcholine (ACh) was used to determine directly activated (DIR) and axon reflex-mediated (AXR) sweating during ACh iontophoresis. The sweat rate, activated sweat gland density, sweat gland output per single gland activated, and oral and skin temperature changes were measured. The sweat onset time of AXR (nicotinic-receptor-mediated) was 56 s shorter in the Temperate-N than in the Tropical-N subjects ( P < 0.0001). The nicotinic-receptor-mediated sweating activity AXR (1), and the muscarinic-receptor-mediated sweating activity DIR, in terms of sweat volume, were 103% and 59% higher in the Temperate-N compared to the Tropical-N subjects ( P < 0.0001). The Temperate-N group also had a 17.8% ( P < 0.0001) higher active sweat gland density, 35.4% higher sweat output per gland, 0.24°C higher resting oral temperature, and 0.62°C higher resting forearm skin temperature compared to the Tropical-N subjects ( P < 0.01). ACh iontophoresis did not influence oral temperature, but increased skin temperature near where the ACh was administered, in both groups. These results suggest that suppressed thermal sweating in the Tropical-N subjects was, at least in part, due to suppressed sweat gland sensitivity to ACh through both recruitment of active sweat glands and the sweat gland output per each gland
Mechanisms promoting higher growth rate in arctic than in temperate shorebirds

NARCIS (Netherlands)

Schekkerman, H.; Tulp, I.Y.M.; Piersma, T.; Visser, G.H.

2003-01-01

We compared prefledging growth, energy expenditure, and time budgets in the arctic-breeding red knot (Calidris canutus) to those in temperate shorebirds, to investigate how arctic chicks achieve a high growth rate despite energetic difficulties associated with precocial development in a cold
Mechanisms promoting higher growth rate in arctic than in temperate shorebirds

NARCIS (Netherlands)

Schekkerman, H; Tulp, Ingrid; Piersma, T.; Visser, G.H.

We compared prefledging growth, energy expenditure, and time budgets in the arctic-breeding red knot (Calidris canutus) to those in temperate shorebirds, to investigate how arctic chicks achieve a high growth rate despite energetic difficulties associated with precocial development in a cold
Tempered fractional time series model for turbulence in geophysical flows

International Nuclear Information System (INIS)

Meerschaert, Mark M; Sabzikar, Farzad; Phanikumar, Mantha S; Zeleke, Aklilu

2014-01-01

We propose a new time series model for velocity data in turbulent flows. The new model employs tempered fractional calculus to extend the classical 5/3 spectral model of Kolmogorov. Application to wind speed and water velocity in a large lake are presented, to demonstrate the practical utility of the model. (paper)
MUMAL: Multivariate analysis in shotgun proteomics using machine learning techniques

Directory of Open Access Journals (Sweden)

Cerqueira Fabio R

2012-10-01

Full Text Available Abstract Background The shotgun strategy (liquid chromatography coupled with tandem mass spectrometry is widely applied for identification of proteins in complex mixtures. This method gives rise to thousands of spectra in a single run, which are interpreted by computational tools. Such tools normally use a protein database from which peptide sequences are extracted for matching with experimentally derived mass spectral data. After the database search, the correctness of obtained peptide-spectrum matches (PSMs needs to be evaluated also by algorithms, as a manual curation of these huge datasets would be impractical. The target-decoy database strategy is largely used to perform spectrum evaluation. Nonetheless, this method has been applied without considering sensitivity, i.e., only error estimation is taken into account. A recently proposed method termed MUDE treats the target-decoy analysis as an optimization problem, where sensitivity is maximized. This method demonstrates a significant increase in the retrieved number of PSMs for a fixed error rate. However, the MUDE model is constructed in such a way that linear decision boundaries are established to separate correct from incorrect PSMs. Besides, the described heuristic for solving the optimization problem has to be executed many times to achieve a significant augmentation in sensitivity. Results Here, we propose a new method, termed MUMAL, for PSM assessment that is based on machine learning techniques. Our method can establish nonlinear decision boundaries, leading to a higher chance to retrieve more true positives. Furthermore, we need few iterations to achieve high sensitivities, strikingly shortening the running time of the whole process. Experiments show that our method achieves a considerably higher number of PSMs compared with standard tools such as MUDE, PeptideProphet, and typical target-decoy approaches. Conclusion Our approach not only enhances the computational performance, and
Immune indexes of larks from desert and temperate regions show weak associations with life history but stronger links to environmental variation in microbial abundance.

Science.gov (United States)

Horrocks, Nicholas P C; Hegemann, Arne; Matson, Kevin D; Hine, Kathryn; Jaquier, Sophie; Shobrak, Mohammed; Williams, Joseph B; Tinbergen, Joost M; Tieleman, B Irene

2012-01-01

Immune defense may vary as a result of trade-offs with other life-history traits or in parallel with variation in antigen levels in the environment. We studied lark species (Alaudidae) in the Arabian Desert and temperate Netherlands to test opposing predictions from these two hypotheses. Based on their slower pace of life, the trade-off hypothesis predicts relatively stronger immune defenses in desert larks compared with temperate larks. However, as predicted by the antigen exposure hypothesis, reduced microbial abundances in deserts should result in desert-living larks having relatively weaker immune defenses. We quantified host-independent and host-dependent microbial abundances of culturable microbes in ambient air and from the surfaces of birds. We measured components of immunity by quantifying concentrations of the acute-phase protein haptoglobin, natural antibody-mediated agglutination titers, complement-mediated lysis titers, and the microbicidal ability of whole blood. Desert-living larks were exposed to significantly lower concentrations of airborne microbes than temperate larks, and densities of some bird-associated microbes were also lower in desert species. Haptoglobin concentrations and lysis titers were also significantly lower in desert-living larks, but other immune indexes did not differ. Thus, contrary to the trade-off hypothesis, we found little evidence that a slow pace of life predicted increased immunological investment. In contrast, and in support of the antigen exposure hypothesis, associations between microbial exposure and some immune indexes were apparent. Measures of antigen exposure, including assessment of host-independent and host-dependent microbial assemblages, can provide novel insights into the mechanisms underlying immunological variation.

Differences in muscle fiber size and associated energetic costs in phylogenetically paired tropical and temperate birds.

Science.gov (United States)

Jimenez, Ana Gabriela; Williams, Joseph B

2014-01-01

Tropical and temperate birds provide a unique system to examine mechanistic consequences of life-history trade-offs at opposing ends of the pace-of-life spectrum; tropical birds tend to have a slow pace of life whereas temperate birds the opposite. Birds in the tropics have a lower whole-animal basal metabolic rate and peak metabolic rate, lower rates of reproduction, and longer survival than birds in temperate regions. Although skeletal muscle has a relatively low tissue-specific metabolism at rest, it makes up the largest fraction of body mass and therefore contributes more to basal metabolism than any other tissue. A principal property of muscle cells that influences their rate of metabolism is fiber size. The optimal fiber size hypothesis attempts to link whole-animal basal metabolic rate to the cost of maintaining muscle mass by stating that larger fibers may be metabolically cheaper to maintain since the surface area∶volume ratio (SA∶V) is reduced compared with smaller fibers and thus the amount of area to transport ions is also reduced. Because tropical birds have a reduced whole-organism metabolism, we hypothesized that they would have larger muscle fibers than temperate birds, given that larger muscle fibers have reduced energy demand from membrane Na(+)-K(+) pumps. Alternatively, smaller muscle fibers could result in a lower capacity for shivering and exercise. To test this idea, we examined muscle fiber size and Na(+)-K(+)-ATPase activity in 16 phylogenetically paired species of tropical and temperate birds. We found that 3 of the 16 paired comparisons indicated that tropical birds had significantly larger fibers, contrary to our hypothesis. Our data show that SA∶V is proportional to Na(+)-K(+)-ATPase activity in muscles of birds.
New temperable solar coatings: Tempsol

Science.gov (United States)

Demiryont, Hulya

2001-11-01

This paper deals with the large area deposition and coating properties of the thermo-stable (temperable/bendable) solar coating material, CuO, and some new optical coating systems comprising CuO films for architectural and automotive/transportation applications. The CuO solar coating is combined with other coating layers, for example, an anti-reflection film, a reflection film, a coloration coating layer, etc., which are also thermo-stable. The film systems are developed at the research laboratory by D.C. Magnetron reactive sputtering process. The new developed technologies then transferred to the production line. Product performances are compared before and after heat treatment of the coating systems. Performance tables and other physical properties, including optical parameters, mechanical and environmental stability, storage properties, etc., are also presented for this new product series.
Responses of Winter Wheat Yields to Warming-Mediated Vernalization Variations Across Temperate Europe

Directory of Open Access Journals (Sweden)

Xiuchen Wu

2017-10-01

Full Text Available Rapid climate warming, with much higher warming rates in winter and spring, could affect the vernalization fulfillment, a critical process for induction of crop reproductive growth and consequent grain filling in temperate winter crops. However, regional observational evidence of the effects of historical warming-mediated vernalization variations on temperate winter crop yields is lacking. Here, we statistically quantified the interannual sensitivity of winter wheat yields to vernalization degree days (VDD during 1975–2009 and its spatial relationship with multi-year mean VDD over temperate Europe (TE, using EUROSTAT crop yield statistics, observed and simulated crop phenology data and gridded daily climate data. Our results revealed a pervasively positive interannual sensitivity of winter wheat yields to variations in VDD (γVDD over TE, with a mean γVDD of 2.8 ± 1.5 kg ha−1 VDD−1. We revealed a significant (p < 0.05 negative exponential relationship between γVDD and multi-year mean VDD for winter wheat across TE, with higher γVDD in winter wheat planting areas with lower multi-year mean VDD. Our findings shed light on potential vulnerability of winter wheat yields to warming-mediated vernalization variations over TE, particularly considering a likely future warmer climate.
Cancer risk among Danish male Seventh-Day Adventists and other temperance society members.

Science.gov (United States)

Jensen, O M

1983-06-01

Cancer risk was studied in 781 male Seventh-Day Adventists (SDA) and 808 male members of other temperance societies. Standardized morbidity ratios for all cancers were 0.69 among SDA and 1.05 among other temperants. Significantly decreased risks of cancers were noted among SDA for cancer of the colon [observed/expected (O/E): 0.13], cancer of the respiratory system (O/E: 0.17), cancer of the lung (O/E: 0.15), and cancer of the bladder including papilloma (O/E: 0.13). No significant deviations from expectations were noted among members of other temperance societies. Thus risks of tobacco-associated cancers were markedly decreased among SDA. The risk of alcohol-associated cancers (cancers of the oral cavity, pharynx, esophagus, and larynx) taken together was also decreased (O/E: 0.7), although not significantly so. When the results were compared with those of a previous study of Danish brewery workers who had a high average daily beer intake, the present investigation provides further support that the alleged association between beer consumption and the occurrence of rectal cancer is of a noncausal nature. The explanation for the decreased risk of colon cancer should probably be sought in the dietary practices of SDA.
Structure–property relationship in a 960 MPa grade ultrahigh strength low carbon niobium–vanadium microalloyed steel: The significance of high frequency induction tempering

International Nuclear Information System (INIS)

Xie, Z.J.; Fang, Y.P.; Han, G.; Guo, H.; Misra, R.D.K.; Shang, C.J.

2014-01-01

The present study describes the microstructure and precipitation behavior in an ultra-high strength low carbon niobium–vanadium microalloyed steel that was processed by quenching and high frequency induction tempering. Ultrahigh yield strength of ∼1000 MPa with high elongation of ∼15% and high low temperature toughness of 55 J (half thickness) at −40 °C was obtained after quenching from austenitization at 900 °C for 30 min, and tempering at 600 °C for 15 min by induction reheating with a reheating rate of ∼50 °C/s. While the yield strength increase on tempering was similar for both induction reheating and conventional reheating (electrical resistance reheating), there was ∼100% increase in low temperature toughness in induction reheated steel compared to the conventional reheating process. The underlying reason for the increase in toughness was attributed to the transformation of cementite film observed in conventional reheating and tempering to nanoscale cementite in induction reheating and tempering. The precipitation of nanoscale carbides is believed to significantly contribute to ultra-high strength, good ductility, and high toughness in the high frequency induction reheating and tempering process
Groundwater flow and transport modelling during the temperate period for the SR-Can assessment. Forsmark area - version 1.2

Energy Technology Data Exchange (ETDEWEB)

Hartley, Lee; Hoch, Andrew; Jackson, Peter; Joyce, Steve; McCarthy, Rachel; Rodwell, William; Swift, Ben [Serco Assurance, Harwell (United Kingdom); Marsic, Niko [Kemakta Konsult AB, Stockholm (Sweden)

2006-12-15

The focus of the study described in this report has been to perform numerical simulations of the geosphere from post-closure and throughout the temperate period up until the beginning of the next permafrost period around 9,000 AD. Together with providing quantitative results for the immediate temperate period following post-closure, these results are also intended to give a qualitative indication of the evolution of the groundwater system during future temperate periods within an ongoing cycle of glacial/inter-glacial events. Additional calculations were performed to assess the impact of the effects of gas and heat generation in the repository on groundwater flow.
Groundwater flow and transport modelling during the temperate period for the SR-Can assessment. Forsmark area - version 1.2

International Nuclear Information System (INIS)

Hartley, Lee; Hoch, Andrew; Jackson, Peter; Joyce, Steve; McCarthy, Rachel; Rodwell, William; Swift, Ben; Marsic, Niko

2006-12-01

The focus of the study described in this report has been to perform numerical simulations of the geosphere from post-closure and throughout the temperate period up until the beginning of the next permafrost period around 9,000 AD. Together with providing quantitative results for the immediate temperate period following post-closure, these results are also intended to give a qualitative indication of the evolution of the groundwater system during future temperate periods within an ongoing cycle of glacial/inter-glacial events. Additional calculations were performed to assess the impact of the effects of gas and heat generation in the repository on groundwater flow
Echinoderms display morphological and behavioural phenotypic plasticity in response to their trophic environment.

Directory of Open Access Journals (Sweden)

Adam D Hughes

Full Text Available The trophic interactions of sea urchins are known to be the agents of phase shifts in benthic marine habitats such as tropical and temperate reefs. In temperate reefs, the grazing activity of sea urchins has been responsible for the destruction of kelp forests and the formation of 'urchin barrens', a rocky habitat dominated by crustose algae and encrusting invertebrates. Once formed, these urchin barrens can persist for decades. Trophic plasticity in the sea urchin may contribute to the stability and resilience of this alternate stable state by increasing diet breadth in sea urchins. This plasticity promotes ecological connectivity and weakens species interactions and so increases ecosystem stability. We test the hypothesis that sea urchins exhibit trophic plasticity using an approach that controls for other typically confounding environmental and genetic factors. To do this, we exposed a genetically homogenous population of sea urchins to two very different trophic environments over a period of two years. The sea urchins exhibited a wide degree of phenotypic trophic plasticity when exposed to contrasting trophic environments. The two populations developed differences in their gross morphology and the test microstructure. In addition, when challenged with unfamiliar prey, the response of each group was different. We show that sea urchins exhibit significant morphological and behavioural phenotypic plasticity independent of their environment or their nutritional status.
Local-scale drivers of tree survival in a temperate forest.

Science.gov (United States)

Wang, Xugao; Comita, Liza S; Hao, Zhanqing; Davies, Stuart J; Ye, Ji; Lin, Fei; Yuan, Zuoqiang

2012-01-01

Tree survival plays a central role in forest ecosystems. Although many factors such as tree size, abiotic and biotic neighborhoods have been proposed as being important in explaining patterns of tree survival, their contributions are still subject to debate. We used generalized linear mixed models to examine the relative importance of tree size, local abiotic conditions and the density and identity of neighbors on tree survival in an old-growth temperate forest in northeastern China at three levels (community, guild and species). Tree size and both abiotic and biotic neighborhood variables influenced tree survival under current forest conditions, but their relative importance varied dramatically within and among the community, guild and species levels. Of the variables tested, tree size was typically the most important predictor of tree survival, followed by biotic and then abiotic variables. The effect of tree size on survival varied from strongly positive for small trees (1-20 cm dbh) and medium trees (20-40 cm dbh), to slightly negative for large trees (>40 cm dbh). Among the biotic factors, we found strong evidence for negative density and frequency dependence in this temperate forest, as indicated by negative effects of both total basal area of neighbors and the frequency of conspecific neighbors. Among the abiotic factors tested, soil nutrients tended to be more important in affecting tree survival than topographic variables. Abiotic factors generally influenced survival for species with relatively high abundance, for individuals in smaller size classes and for shade-tolerant species. Our study demonstrates that the relative importance of variables driving patterns of tree survival differs greatly among size classes, species guilds and abundance classes in temperate forest, which can further understanding of forest dynamics and offer important insights into forest management.
Effect of initial temper on the creep behavior of precipitation–hardened WE43 alloy

Energy Technology Data Exchange (ETDEWEB)

Kang, Y.H. [The Group of Magnesium Alloys and Their Applications, Institute of Metal Research Chinese Academy of Sciences, 62 Wencui Road, Shenyang 110016 (China); University of the Chinese Academy of Sciences, Beijing 100049 (China); Wang, X.X.; Zhang, N. [Shenyang Liming Aero–Engine Group Corporation, Aero–Engine Corporation of China, Shenyang 110043 (China); Yan, H., E-mail: hyan@imr.ac.cn [The Group of Magnesium Alloys and Their Applications, Institute of Metal Research Chinese Academy of Sciences, 62 Wencui Road, Shenyang 110016 (China); Chen, R.S., E-mail: rschen@imr.ac.cn [The Group of Magnesium Alloys and Their Applications, Institute of Metal Research Chinese Academy of Sciences, 62 Wencui Road, Shenyang 110016 (China)

2017-03-24

The effect of initial tempers with different characteristics of precipitates and contents of supersaturated solute atoms, including the homogenized, peak–aged and over–aged conditions, on the tensile creep behavior of WE43 alloy has been investigated at 523 K. Results show that the peak–aged alloy at 523 K obtained superior creep resistance than the homogenized, peak–aged at 498 K and over–aged at 523 K alloy. A uniform dispersion of β precipitates was dynamically formed within steady–stage creep microstructure of the homogenized WE43 alloy after creep deformation of 200 h. It is found that the precipitate size and distribution is similar with the alloy aged equal time without the applied stress. In addition, the WE43 alloy in all tempers obtains similar precipitate size and distribution in their steady–stage creep microstructures. Therefore, it is inferred that the various initial tempers mainly affect the primary creep stage. Furthermore, numerous dislocations were detected between precipitates and the stress exponent n is 4.5, which is close to 5. Thereby, dislocation climb is suggested to be the creep mechanism. The reason for the peak–aged alloy at 523 K obtained superior creep resistance is that the initial uniform dispersion of β″ and β′ precipitates have smaller precipitate size and higher precipitate density than that of the homogenized and over–aged alloy, which are more effectively to hider dislocation climb. However, a deterioration of creep resistance was occurred in the peak−aged alloy at 498 K due to precipitate recovery when crept at 523 K. As a consequence, WE43 alloy in peak–aged temper at 523 K achieves the highest creep resistance.
Modelling the occurrence of postflexion stages of a marine estuarine-dependent fish in temperate South African estuaries

Directory of Open Access Journals (Sweden)

Yanasivan Kisten

2017-03-01

Full Text Available The movement of postflexion larvae of marine estuarine-dependent species into estuaries is critical for the survival of fishes reliant on estuaries as nurseries. However, detailed studies focused on environmental variability experienced by postflexion larvae entering a range of estuary types under varying conditions are rare. This study assessed the in situ conditions (temperature, salinity and water clarity under which the southern African endemic fish Rhabdosargus holubi (Sparidae recruits into estuaries. Postflexion larvae were sampled in three biogeographic regions (cool temperate, warm temperate and subtropical boundary, which included three estuary types (permanently open estuaries (POEs, temporarily open/closed estuaries and estuarine lake systems on a seasonal basis, independent of each other. Rhabdosargus holubi larvae were more abundant in spring and summer, in POEs in the warm temperate region. Models predicted that higher larval occurrence in estuaries is a function of lower salinity (e.g. mesohaline zones of 5-17.9 salinity and lower water clarity (e.g. 0-0.2 Kd, light extinction coefficient, particularly for warm, temperate POEs. This re-emphasizes the importance of freshwater for optimal nursery functioning, which may be compromised by impoundments, abstraction and climate change in water-short countries like South Africa.
Structure–mechanical property relationship in a high strength low carbon alloy steel processed by two-step intercritical annealing and intercritical tempering

International Nuclear Information System (INIS)

Zhou, W.H.; Wang, X.L.; Venkatsurya, P.K.C.; Guo, H.; Shang, C.J.; Misra, R.D.K.

2014-01-01

The influence of annealing and tempering temperature on the microstructure and mechanical properties was investigated in a low carbon alloy steel that was processed by a two-step intercritical annealing and intercritical tempering heat treatment. In general, the microstructure of the processed steel comprises intercritical lath-like ferrite, bainitic/martensitic lath and acicular-type retained austenite. The lower intercritical annealing temperature resulted in lower fraction of intercritical ferrite with finer grain size and consequently higher strength. On the other hand, the intercritical tempering temperature significantly influenced retained austenite content and precipitation. High fraction of retained austenite was obtained at a temperature slightly above Ac 1 temperature and retained austenite content decreased with increase in tempering temperature. This behavior is attributed to the competition between the enrichment of Mn and Ni and the fraction of reversed austenite. Fine niobium carbide precipitates of size ∼2–6 nm and copper precipitates of size range ∼10–30 nm were obtained. The optimal intercritical annealing and tempering temperatures to obtain the product of tensile strength and elongation % of ∼30 GPa% were 780 °C and 660 °C, respectively and the volume fraction of retained austenite was ∼29%
Finite Element Implementation of a Glass Tempering Model in Three Dimensions

DEFF Research Database (Denmark)

Nielsen, Jens Henrik; Olesen, John Forbes; Poulsen, Peter Noe

2010-01-01

The present paper develops and validates a 3D model for the simulation of glass tempering. It is assembled from well-known models of temperature dependent viscoelasticity and structural relaxation and predicts both transient and steady-state stresses in complex 3D glass geometries. The theory and...
Simulation of Temperature Field Distribution for Cutting the Temperated Glass by Ultraviolet Laser

Science.gov (United States)

Yang, B. J.; He, Y. C.; Dai, F.; Lin, X. C.

2017-03-01

The finite element software ANSYS was adopted to simulate the temperature field distribution for laser cutting tempered glass, and the influence of different process parameters, including laser power, glass thickness and cutting speed, on temperature field distribution was studied in detail. The results show that the laser power has a greater influence on temperature field distribution than other paremeters, and when the laser power gets to 60W, the highest temperature reaches 749°C, which is higher than the glass softening temperature. It reflects the material near the laser spot is melted and the molten slag is removed by the high-energy water beam quickly. Finally, through the water guided laser cutting tempered glass experiment the FEM theoretical analysis was verified.
Heat stress in cows at pasture and benefit of shade in a temperate climate region

Science.gov (United States)

Veissier, Isabelle; Van laer, Eva; Palme, Rupert; Moons, Christel P. H.; Ampe, Bart; Sonck, Bart; Andanson, Stéphane; Tuyttens, Frank A. M.

2017-11-01

Under temperate climates, cattle are often at pasture in summer and are not necessarily provided with shade. We aimed at evaluating in a temperate region (Belgium) to what extent cattle may suffer from heat stress (measured through body temperature, respiration rate and panting score, cortisol or its metabolites in milk, and feces on hot days) and at assessing the potential benefits of shade. During the summer of 2012, 20 cows were kept on pasture without access to shade. During the summer of 2011, ten cows had access to shade (young trees with shade cloth hung between them), whereas ten cows had no access. Climatic conditions were quantified by the Heat Load Index (HLI). In animals without access to shade respiration rates, panting scores, rectal temperatures, and milk cortisol concentrations increased as HLI increased in both 2011 and 2012. Fecal cortisol metabolites varied with HLI in 2011 only. When cattle had access to shade, their use of shade increased as the HLI increased. This effect was more pronounced during the last part of the summer, possibly due to better acquaintance with the shade construction. In this case, shade use increased to 65% at the highest HLI (79). Shade tempered the effects on respiration, rectal temperature, and fecal cortisol metabolites. Milk cortisol was not influenced by HLI for cows using shade for > 10% of the day. Therefore, even in temperate areas, cattle may suffer from heat when they are at pasture in summer and providing shade can reduce such stress.
Discovering and differentiating new and emerging clonal populations of Chlamydia trachomatis with a novel shotgun cell culture harvest assay.

Science.gov (United States)

Somboonna, Naraporn; Mead, Sally; Liu, Jessica; Dean, Deborah

2008-03-01

Chlamydia trachomatis is the leading cause of preventable blindness and bacterial sexually transmitted diseases worldwide. Plaque assays have been used to clonally segregate laboratory-adapted C. trachomatis strains from mixed infections, but no assays have been reported to segregate clones from recent clinical samples. We developed a novel shotgun cell culture harvest assay for this purpose because we found that recent clinical samples do not form plaques. Clones were strain-typed by using outer membrane protein A and 16S rRNA sequences. Surprisingly, ocular trachoma reference strain A/SA-1 contained clones of Chlamydophila abortus. C. abortus primarily infects ruminants and pigs and has never been identified in populations where trachoma is endemic. Three clonal variants of reference strain Ba/Apache-2 were also identified. Our findings reflect the importance of clonal isolation in identifying constituents of mixed infections containing new or emerging strains and of viable clones for research to more fully understand the dynamics of in vivo strain-mixing, evolution, and disease pathogenesis.
On the Nature of Internal Interfaces in Tempered Martensite Ferritic Steels

Czech Academy of Sciences Publication Activity Database

Dronhofer, A.; Pešička, J.; Dlouhý, Antonín; Eggeler, G.

2003-01-01

Roč. 94, č. 5 (2003), s. 511-520 ISSN 0044-3093 R&D Projects: GA ČR GA106/99/1172 Institutional research plan: CEZ:AV0Z2041904 Keywords : Tempered martensite ferritic steels * martensite variants * orientation imaging Subject RIV: JG - Metallurgy Impact factor: 0.637, year: 2003
Carbide characterization in a Nb-microalloyed advanced ultrahigh strength steel after quenching-partitioning-tempering process

International Nuclear Information System (INIS)

Wang, X.D.; Xu, W.Z.; Guo, Z.H.; Wang, L.; Rong, Y.H.

2010-01-01

Based on the observations of scanning electron microscopy and transmission electron microscopy, four kinds of carbides were identified in a Nb-microalloyed steel after quenching-partitioning-tempering treatment. In addition to transitional epsilon carbide that usually forms in silicon-free carbon steel, other three types of niobium carbides (NbC) formed at various treatment stages respectively. They are incoherent NbC inclusion that nucleated at solidification mainly, fine NbC that nucleated in lath martensite at tempering stage and regular polygonal NbC that nucleated in austenite before quenching. Their formation mechanisms on steel were discussed briefly based on thermodynamics.
Induction of temperate cyanophage AS-1 by heavy metal – copper

Directory of Open Access Journals (Sweden)

Chu Tin-Chun

2006-02-01

Full Text Available Abstract Background It has been reported that some marine cyanophage are temperate and can be induced from a lysogenic phase to a lytic phase by different agents such as heavy metals. However, to date no significant reports have focused on the temperate nature of freshwater cyanophage/cyanobacteria. Previous experiments with cyanophage AS-1 and cyanobacteria Anacystis nidulans have provided some evidence that AS-1 may have a lysogenic life cycle in addition to the characterized lytic cycle. Results In this study, the possible temperate A. nidulans was treated with different concentrations of heavy metal-copper. CuSO4 with concentrations of 3.1 × 10-3 M, 3.1 × 10-4 M, 3.1 × 10-5 M and 3.1 × 10-6 M were used to detect the induction of AS-1 from A. nidulans. The population of the host, unicellular cyanobacteria Anacystis nidulans, was monitored by direct count and turbidity while the amount of virus produced was derived from plaque forming units (PFU by a direct plating method. The ratio of AS-1 release from A. nidulans was also determined. From these results it appears that AS-1 lysogenic phage can be induced by copper at concentrations from 3.1 × 10-6 M to 3.1 × 10-4 M. Maximal phage induction occurred at 6 hours after addition of copper, with an optimal concentration of 3.1 × 10-6 M. Conclusion Cu2+ is a significant inducer for lysogenic cyanobacterial cells and consequently would be a potential control agent in the cyanobacteria population in fresh water ecosystems.
Nitrous oxide emission reduction in temperate biochar-amended soils

Science.gov (United States)

Felber, R.; Hüppi, R.; Leifeld, J.; Neftel, A.

2012-01-01

Biochar, a pyrolysis product of organic residues, is an amendment for agricultural soils to improve soil fertility, sequester CO2 and reduce greenhouse gas (GHG) emissions. In highly weathered tropical soils laboratory incubations of soil-biochar mixtures revealed substantial reductions for nitrous oxide (N2O) and carbon dioxide (CO2). In contrast, evidence is scarce for temperate soils. In a three-factorial laboratory incubation experiment two different temperate agricultural soils were amended with green waste and coffee grounds biochar. N2O and CO2 emissions were measured at the beginning and end of a three month incubation. The experiments were conducted under three different conditions (no additional nutrients, glucose addition, and nitrate and glucose addition) representing different field conditions. We found mean N2O emission reductions of 60 % compared to soils without addition of biochar. The reduction depended on biochar type and soil type as well as on the age of the samples. CO2 emissions were slightly reduced, too. NO3- but not NH4+ concentrations were significantly reduced shortly after biochar incorporation. Despite the highly significant suppression of N2O emissions biochar effects should not be transferred one-to-one to field conditions but need to be tested accordingly.

Structure–mechanical property relationship in a high strength low carbon alloy steel processed by two-step intercritical annealing and intercritical tempering

Energy Technology Data Exchange (ETDEWEB)

Zhou, W.H. [School of Materials Science and Engineering, University of Science and Technology, Beijing (China); Laboratory for Excellence in Advanced Steel Research, Center for Structural and Functional Materials, Institute for Material Research and Innovation, University of Louisiana at Lafayette, P.O. Box 44130, Lafayette, LA 70503 (United States); Wang, X.L. [School of Materials Science and Engineering, University of Science and Technology, Beijing (China); Venkatsurya, P.K.C. [Laboratory for Excellence in Advanced Steel Research, Center for Structural and Functional Materials, Institute for Material Research and Innovation, University of Louisiana at Lafayette, P.O. Box 44130, Lafayette, LA 70503 (United States); Guo, H. [School of Materials Science and Engineering, University of Science and Technology, Beijing (China); Shang, C.J., E-mail: cjshang@ustb.edu.cn [School of Materials Science and Engineering, University of Science and Technology, Beijing (China); Misra, R.D.K. [Laboratory for Excellence in Advanced Steel Research, Center for Structural and Functional Materials, Institute for Material Research and Innovation, University of Louisiana at Lafayette, P.O. Box 44130, Lafayette, LA 70503 (United States)

2014-06-01

The influence of annealing and tempering temperature on the microstructure and mechanical properties was investigated in a low carbon alloy steel that was processed by a two-step intercritical annealing and intercritical tempering heat treatment. In general, the microstructure of the processed steel comprises intercritical lath-like ferrite, bainitic/martensitic lath and acicular-type retained austenite. The lower intercritical annealing temperature resulted in lower fraction of intercritical ferrite with finer grain size and consequently higher strength. On the other hand, the intercritical tempering temperature significantly influenced retained austenite content and precipitation. High fraction of retained austenite was obtained at a temperature slightly above Ac{sub 1} temperature and retained austenite content decreased with increase in tempering temperature. This behavior is attributed to the competition between the enrichment of Mn and Ni and the fraction of reversed austenite. Fine niobium carbide precipitates of size ∼2–6 nm and copper precipitates of size range ∼10–30 nm were obtained. The optimal intercritical annealing and tempering temperatures to obtain the product of tensile strength and elongation % of ∼30 GPa% were 780 °C and 660 °C, respectively and the volume fraction of retained austenite was ∼29%.
Replica exchange with solute tempering: A method for sampling biological systems in explicit water

Science.gov (United States)

Liu, Pu; Kim, Byungchan; Friesner, Richard A.; Berne, B. J.

2005-09-01

An innovative replica exchange (parallel tempering) method called replica exchange with solute tempering (REST) for the efficient sampling of aqueous protein solutions is presented here. The method bypasses the poor scaling with system size of standard replica exchange and thus reduces the number of replicas (parallel processes) that must be used. This reduction is accomplished by deforming the Hamiltonian function for each replica in such a way that the acceptance probability for the exchange of replica configurations does not depend on the number of explicit water molecules in the system. For proof of concept, REST is compared with standard replica exchange for an alanine dipeptide molecule in water. The comparisons confirm that REST greatly reduces the number of CPUs required by regular replica exchange and increases the sampling efficiency. This method reduces the CPU time required for calculating thermodynamic averages and for the ab initio folding of proteins in explicit water. Author contributions: B.J.B. designed research; P.L. and B.K. performed research; P.L. and B.K. analyzed data; and P.L., B.K., R.A.F., and B.J.B. wrote the paper.Abbreviations: REST, replica exchange with solute tempering; REM, replica exchange method; MD, molecular dynamics.*P.L. and B.K. contributed equally to this work.
A review of the role of temperate forests in the global CO2 balance

International Nuclear Information System (INIS)

Musselman, R.C.; Fox, D.G.

1991-01-01

The role of temperate forests in the global carbon balance is difficult to determine because many uncertainties exist in the data, and many assumptions must be made in these determinations. Still, there is little doubt that increases in atmospheric CO 2 and global warming would have major effects on temperate forest ecosystems. Increases in atmospheric CO 2 may result in increases in photosynthesis, changes in water and nitrogen use efficiency, and changes in carbon allocation. Indirect effects of changes in global carbon balance on regional climate and on microenvironmental conditions, particularly temperature and moisture, may be more important then direct effects of increased CO 2 on vegetation. Increased incidence of forest perturbations might also be expected. The evidence suggests that conditions favorable to forest growth and development may exist in the northern latitudes, while southern latitude forests may undergo drought stress. Current harvest of temperate and world forests contributes substantial amounts of carbon to the atmosphere, possibly as much as 3 gigatons (Gt) per year. Return of this carbon to forest storage may require decades. Forest managers should be aware of the global as well as local impact their management decisions will have on the atmospheric carbon balance of the ecosystems they oversee
Confocal detection of Rayleigh scattering for residual stress measurement in chemically tempered glass

Energy Technology Data Exchange (ETDEWEB)

Hödemann, S., E-mail: siim.hodemann@ut.ee; Möls, P.; Kiisk, V.; Saar, R.; Kikas, J. [Institute of Physics, University of Tartu, Wilhelm Ostwald st., Tartu 50411 (Estonia); Murata, T. [Nippon Electric Glass Co., 7-1 Seiran 2-chome, Otsu-shi, Shiga 520-8639 (Japan)

2015-12-28

A new optical method is presented for evaluation of the stress profile in chemically tempered (chemically strengthened) glass based on confocal detection of scattered laser beam. Theoretically, a lateral resolution of 0.2 μm and a depth resolution of 0.6 μm could be achieved by using a confocal microscope with high-NA immersion objective. The stress profile in the 250 μm thick surface layer of chemically tempered lithium aluminosilicate glass was measured with a high spatial resolution to illustrate the capability of the method. The confocal method is validated using transmission photoelastic and Na{sup +} ion concentration profile measurement. Compositional influence on the stress-optic coefficient is calculated and discussed. Our method opens up new possibilities for three-dimensional scattered light tomography of mechanical imaging in birefringent materials.
TEM characterization on new 9% Cr advanced steels thermomechanical treated after tempering

Science.gov (United States)

Fernández, P.; Hoffmann, J.; Rieth, M.; Roldán, M.; Gómez-Herrero, A.

2018-03-01

Phase transformation on new six reduced activation ferritic/martensitic steels (RAFMs) was investigated to provide the basis for the design and development of advanced steels to maintain adequate strength and creep resistance above 500 °C. The new alloys are designed to increase the amount of fine MX precipitates and reduce coarse M23C6 carbides through alloy composition refinement and the application of thermomechanical treatments. The microstructural investigations by TEM have shown M23C6, M2X, and MX precipitation after tempering at 700 °C/2h with low dislocation recovery, while at 825 °C/2h the martensite developed to subgrain formation and growth. At this stage, only M23C6 and MX were detected. Preliminary results demonstrate that it is feasible to produce fine MX strengthened particles dispersed in the matrix with further optimization of tempering treatments.
Molecular phylogenetics of the genus Neoconocephalus (orthoptera, tettigoniidae and the evolution of temperate life histories.

Directory of Open Access Journals (Sweden)

Robert L Snyder

Full Text Available BACKGROUND: The katydid genus Neoconocephalus (25+ species has a prominent acoustic communication system and occurs in large parts of the Neotropics and Nearctic. This group has been subject of numerous behavioral, physiological, and evolutionary studies of its acoustic communication system. Two distinct life histories occur in this group: The tropical life history incorporates multiple generations/year and direct egg development without environmental triggers. Temperate life history is characterized by overwintering in the egg stage, cold trigger of egg development, and one generation/year. This study reconstructs the phylogenetic relationships within the genus to (1 determine the evolutionary history of the temperate life history, and (2 to support comparative studies of evolutionary and physiological problems in this genus. METHODOLOGY/PRINCIPAL FINDINGS: We used Amplified Fragment Length Polymorphisms (AFLP, and sequences of two nuclear loci and one mitochondrial locus to reconstruct phylogenetic relationships. The analysis included 17 ingroup and two outgroup species. AFLP and mitochondrial data provided resolution at the species level while the two nuclear loci revealed only deeper nodes. The data sets were combined in a super-matrix to estimate a total evidence tree. Seven of the temperate species form a monophyletic group; however, three more temperate species were placed as siblings of tropical species. CONCLUSIONS/SIGNIFICANCE: Our analyses support the reliability of the current taxonomic treatment of the Neoconocephalus fauna of Caribbean, Central, and North America. Ancestral state reconstruction of life history traits was not conclusive, however at least four transitions between life histories occurred among our sample of species. The proposed phylogeny will strengthen conclusions from comparative work in this group.
Mechanisms of nitrogen deposition effects on temperate forest lichens and trees

Science.gov (United States)

Therese S. Carter; Christopher M. Clark; Mark E. Fenn; Sarah Jovan; Steven S. Perakis; Jennifer Riddell; Paul G. Schaberg; Tara L. Greaver; Meredith G. Hastings

2017-01-01

We review the mechanisms of deleterious nitrogen (N) deposition impacts on temperate forests, with a particular focus on trees and lichens. Elevated anthropogenic N deposition to forests has varied effects on individual organisms depending on characteristics both of the N inputs (form, timing, amount) and of the organisms (ecology, physiology) involved. Improved...
Plant volatiles in extreme terrestrial and marine environments.

Science.gov (United States)

Rinnan, Riikka; Steinke, Michael; McGenity, Terry; Loreto, Francesco

2014-08-01

This review summarizes the current understanding on plant and algal volatile organic compound (VOC) production and emission in extreme environments, where temperature, water availability, salinity or other environmental factors pose stress on vegetation. Here, the extreme environments include terrestrial systems, such as arctic tundra, deserts, CO₂ springs and wetlands, and marine systems such as sea ice, tidal rock pools and hypersaline environments, with mangroves and salt marshes at the land-sea interface. The emission potentials at fixed temperature and light level or actual emission rates for phototrophs in extreme environments are frequently higher than for organisms from less stressful environments. For example, plants from the arctic tundra appear to have higher emission potentials for isoprenoids than temperate species, and hypersaline marine habitats contribute to global dimethyl sulphide (DMS) emissions in significant amounts. DMS emissions are more widespread than previously considered, for example, in salt marshes and some desert plants. The reason for widespread VOC, especially isoprenoid, emissions from different extreme environments deserves further attention, as these compounds may have important roles in stress resistance and adaptation to extremes. Climate warming is likely to significantly increase VOC emissions from extreme environments both by direct effects on VOC production and volatility, and indirectly by altering the composition of the vegetation. © 2014 John Wiley & Sons Ltd.
Dams release methane even in temperate zoned

International Nuclear Information System (INIS)

Lemarchand, F.

2010-01-01

The Wohlen lake (near Bern) is a retaining dam built 90 years ago that has undergone a campaign to measure the quantity of methane released. The campaign lasted 1 year and the result was unexpected: 0.15 g/m 2 *day which one of the highest release rates in temperate zones. This result is all the more stunning since water stays only 2 days in average in the reservoir and that the drowned area is not important. In fact the river Aar that feeds the lake is loaded with organic matter coming from humane activities: agriculture and 3 sewage plants. This organic matter decays in the lake releasing methane. (A.C.)
Reinforced glass beams composed of annealed, heat-strengthened and fully tempered glass

NARCIS (Netherlands)

Louter, P.C.; Belis, J.L.I.F.; Bos, F.P.; Veer, F.A.

Annealed, heat-strengthened and fully tempered SG-laminated reinforced glass beam specimens were subjected to four-point bending tests to investigate the effects of glass type on their structural response. During the test the beams showed linear elastic response until initial glass failure, followed
Ecophysiological and anatomical characteristics of the subtropical shrub Zanthoxylum acanthopodium (Rutaceae) in conditions of a temperate continental climate (Serbia)

DEFF Research Database (Denmark)

Rakic, Tamara; Sinzar-Sekulic, Jasmina; Filipovic, Biljana

2009-01-01

The evergreen shrub Zanthoxylum acanthopodium DC. (Rutaceae), originating from warm temperate and subtropical Asia, has existed successfully in the Jevremovac Botanical Garden in Belgrade for more than 80 years. The seasonal pattern of water management in leaves, electrolyte leakage, essential oil...... composition, and leaf anatomy were examined in order to understand the resistance and viability of this subtropical shrub in the temperate continental climate of Belgrade, Serbia....
Microbiological profile of chicken carcasses: A comparative analysis using shotgun metagenomic sequencing

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Alessandra De Cesare

2018-04-01

Full Text Available In the last few years metagenomic and 16S rRNA sequencing have completly changed the microbiological investigations of food products. In this preliminary study, the microbiological profile of chicken carcasses collected from animals fed with different diets were tested by using shotgun metagenomic sequencing. A total of 15 carcasses have been collected at the slaughetrhouse at the end of the refrigeration tunnel from chickens reared for 35 days and fed with a control diet (n=5, a diet supplemented with 1500 FTU/kg of commercial phytase (n=5 and a diet supplemented with 1500 FTU/kg of commercial phytase and 3g/kg of inositol (n=5. Ten grams of neck and breast skin were obtained from each carcass and submited to total DNA extraction by using the DNeasy Blood & Tissue Kit (Qiagen. Sequencing libraries have been prepared by using the Nextera XT DNA Library Preparation Kit (Illumina and sequenced in a HiScanSQ (Illumina at 100 bp in paired ends. A number of sequences ranging between 5 and 9 million was obtained for each sample. Sequence analysis showed that Proteobacteria and Firmicutes represented more than 98% of whole bacterial populations associated to carcass skin in all groups but their abundances were different between groups. Moraxellaceae and other degradative bacteria showed a significantly higher abundance in the control compared to the treated groups. Furthermore, Clostridium perfringens showed a relative frequency of abundance significantly higher in the group fed with phytase and Salmonella enterica in the group fed with phytase plus inositol. The results of this preliminary study showed that metagenome sequencing is suitable to investigate and monitor carcass microbiota in order to detect specific pathogenic and/or degradative populations.
Prevalence, Host Range, and Comparative Genomic Analysis of Temperate Ochrobactrum Phages

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Claudia Jäckel

2017-06-01

Full Text Available Ochrobactrum and Brucella are closely related bacteria that populate different habitats and differ in their pathogenic properties. Only little is known about mobile genetic elements in these genera which might be important for survival and virulence. Previous studies on Brucella lysogeny indicated that active phages are rare in this genus. To gain insight into the presence and nature of prophages in Ochrobactrum, temperate phages were isolated from various species and characterized in detail. In silico analyses disclosed numerous prophages in published Ochrobactrum genomes. Induction experiments showed that Ochrobactrum prophages can be induced by various stress factors and that some strains released phage particles even under non-induced conditions. Sixty percent of lysates prepared from 125 strains revealed lytic activity. The host range and DNA similarities of 19 phages belonging to the families Myoviridae, Siphoviridae, or Podoviridae were determined suggesting that they are highly diverse. Some phages showed relationship to the temperate Brucella inopinata phage BiPB01. The genomic sequences of the myovirus POA1180 (41,655 bp and podovirus POI1126 (60,065 bp were analyzed. Phage POA1180 is very similar to a prophage recently identified in a Brucella strain isolated from an exotic frog. The POA1180 genome contains genes which may confer resistance to chromate and the ability to take up sulfate. Phage POI1126 is related to podoviruses of Sinorhizobium meliloti (PCB5, Erwinia pyrifoliae (Pep14, and Burkholderia cenocepacia (BcepIL02 and almost identical to an unnamed plasmid of the Ochrobactrum intermedium strain LMG 3301. Further experiments revealed that the POI1126 prophage indeed replicates as an extrachromosomal element. The data demonstrate for the first time that active prophages are common in Ochrobactrum and suggest that atypical brucellae also may be a reservoir for temperate phages.
Factors affecting the ozone sensitivity of temperate European grasslands: An overview

International Nuclear Information System (INIS)

Bassin, S.; Volk, M.; Fuhrer, J.

2007-01-01

This overview of experimentally induced effects of ozone aims to identify physiological and ecological principles, which can be used to classify the sensitivity to ozone of temperate grassland communities in Europe. The analysis of data from experiments with single plants, binary mixtures and multi-species communities illustrates the difficulties to relate individual responses to communities, and thus to identify grassland communities most at risk. Although there is increasing evidence that communities can be separated into broad classes of ozone sensitivity, the database from experiments under realistic conditions with representative systems is too small to draw firm conclusions. But it appears that risk assessments, based on results from individuals or immature mixtures exposed in chambers, are only applicable to intensively managed, productive grasslands, and that the risk of ozone damage for most of perennial grasslands with lower productivity tends to be less than previously expected. - An overview of experimentally induced ozone effects suggests that temperate grasslands could be separated into broad classes of ozone sensitivity based on physiological and ecological principles
Factors affecting the ozone sensitivity of temperate European grasslands: An overview

Energy Technology Data Exchange (ETDEWEB)

Bassin, S. [Agroscope FAL Reckenholz, Swiss Federal Research Station for Agroecology and Agriculture, Air Pollution/Climate Group, Reckenholzstrasse 191, CH-8046 Zurich (Switzerland)]. E-mail: seraina.bassin@fal.admin.ch; Volk, M. [Agroscope FAL Reckenholz, Swiss Federal Research Station for Agroecology and Agriculture, Air Pollution/Climate Group, Reckenholzstrasse 191, CH-8046 Zurich (Switzerland); Fuhrer, J. [Agroscope FAL Reckenholz, Swiss Federal Research Station for Agroecology and Agriculture, Air Pollution/Climate Group, Reckenholzstrasse 191, CH-8046 Zurich (Switzerland)

2007-04-15

This overview of experimentally induced effects of ozone aims to identify physiological and ecological principles, which can be used to classify the sensitivity to ozone of temperate grassland communities in Europe. The analysis of data from experiments with single plants, binary mixtures and multi-species communities illustrates the difficulties to relate individual responses to communities, and thus to identify grassland communities most at risk. Although there is increasing evidence that communities can be separated into broad classes of ozone sensitivity, the database from experiments under realistic conditions with representative systems is too small to draw firm conclusions. But it appears that risk assessments, based on results from individuals or immature mixtures exposed in chambers, are only applicable to intensively managed, productive grasslands, and that the risk of ozone damage for most of perennial grasslands with lower productivity tends to be less than previously expected. - An overview of experimentally induced ozone effects suggests that temperate grasslands could be separated into broad classes of ozone sensitivity based on physiological and ecological principles.
Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses.

Science.gov (United States)

Ceballos-Laita, Laura; Gutierrez-Carbonell, Elain; Takahashi, Daisuke; Abadía, Anunciación; Uemura, Matsuo; Abadía, Javier; López-Millán, Ana Flor

2018-01-06

The aim of this work was to study the effects of Fe and Mn deficiencies on the xylem sap proteome of tomato using a shotgun proteomic approach, with the final goal of elucidating plant response mechanisms to these stresses. This approach yielded 643 proteins reliably identified and quantified with 70% of them predicted as secretory. Iron and Mn deficiencies caused statistically significant and biologically relevant abundance changes in 119 and 118 xylem sap proteins, respectively. In both deficiencies, metabolic pathways most affected were protein metabolism, stress/oxidoreductases and cell wall modifications. First, results suggest that Fe deficiency elicited more stress responses than Mn deficiency, based on the changes in oxidative and proteolytic enzymes. Second, both nutrient deficiencies affect the secondary cell wall metabolism, with changes in Fe deficiency occurring via peroxidase activity, and in Mn deficiency involving peroxidase, Cu-oxidase and fasciclin-like arabinogalactan proteins. Third, the primary cell wall metabolism was affected by both nutrient deficiencies, with changes following opposite directions as judged from the abundances of several glycoside-hydrolases with endo-glycolytic activities and pectin esterases. Fourth, signaling pathways via xylem involving CLE and/or lipids as well as changes in phosphorylation and N-glycosylation also play a role in the responses to these stresses. Biological significance In spite of being essential for the delivery of nutrients to the shoots, our knowledge of xylem responses to nutrient deficiencies is very limited. The present work applies a shotgun proteomic approach to unravel the effects of Fe and Mn deficiencies on the xylem sap proteome. Overall, Fe deficiency seems to elicit more stress in the xylem sap proteome than Mn deficiency, based on the changes measured in proteolytic and oxido-reductase proteins, whereas both nutrients exert modifications in the composition of the primary and secondary
Strain-rate behavior in tension of the tempered martensitic reduced activation steel Eurofer97

Energy Technology Data Exchange (ETDEWEB)

Cadoni, Ezio; Dotta, Matteo; Forni, Daniele [University of Applied Sciences of Southern Switzerland, P.O. Box 105, CH-6952 Canobbio (Switzerland); Spaetig, Philippe, E-mail: philippe.spatig@psi.ch [Ecole Polytechnique Federale de Lausanne (EPFL), Centre de Recherches en Physique des Plasmas, Association Euratom-Confederation Suisse, CH-5232 Villigen PSI (Switzerland)

2011-07-31

The tensile properties of the high-chromium tempered martensitic reduced activation steel Eurofer97 were determined from tests carried out over a wide range of strain-rates on cylindrical specimens. The quasi-static tests were performed with a universal electro-mechanical machine, whereas a hydro-pneumatic machine and a JRC-split Hopkinson tensile bar apparatus were used for medium and high strain-rates respectively. This tempered martensitic stainless steel showed significant strain-rate sensitivity. The constitutive behavior was investigated within a framework of dislocations dynamics model using Kock's approach. The parameters of the model were determined and then used to predict the deformation range of the tensile deformation stability. A very good agreement between the experimental results and predictions of the model was found.
Strain-rate behavior in tension of the tempered martensitic reduced activation steel Eurofer97

International Nuclear Information System (INIS)

Cadoni, Ezio; Dotta, Matteo; Forni, Daniele; Spaetig, Philippe

2011-01-01

The tensile properties of the high-chromium tempered martensitic reduced activation steel Eurofer97 were determined from tests carried out over a wide range of strain-rates on cylindrical specimens. The quasi-static tests were performed with a universal electro-mechanical machine, whereas a hydro-pneumatic machine and a JRC-split Hopkinson tensile bar apparatus were used for medium and high strain-rates respectively. This tempered martensitic stainless steel showed significant strain-rate sensitivity. The constitutive behavior was investigated within a framework of dislocations dynamics model using Kock's approach. The parameters of the model were determined and then used to predict the deformation range of the tensile deformation stability. A very good agreement between the experimental results and predictions of the model was found.
A label-free quantitative shotgun proteomics analysis of rice grain development

Directory of Open Access Journals (Sweden)

Koh Hee-Jong

2011-09-01

Full Text Available Abstract Background Although a great deal of rice proteomic research has been conducted, there are relatively few studies specifically addressing the rice grain proteome. The existing rice grain proteomic researches have focused on the identification of differentially expressed proteins or monitoring protein expression patterns during grain filling stages. Results Proteins were extracted from rice grains 10, 20, and 30 days after flowering, as well as from fully mature grains. By merging all of the identified proteins in this study, we identified 4,172 non-redundant proteins with a wide range of molecular weights (from 5.2 kDa to 611 kDa and pI values (from pH 2.9 to pH 12.6. A Genome Ontology category enrichment analysis for the 4,172 proteins revealed that 52 categories were enriched, including the carbohydrate metabolic process, transport, localization, lipid metabolic process, and secondary metabolic process. The relative abundances of the 1,784 reproducibly identified proteins were compared to detect 484 differentially expressed proteins during rice grain development. Clustering analysis and Genome Ontology category enrichment analysis revealed that proteins involved in the metabolic process were enriched through all stages of development, suggesting that proteome changes occurred even in the desiccation phase. Interestingly, enrichments of proteins involved in protein folding were detected in the desiccation phase and in fully mature grain. Conclusion This is the first report conducting comprehensive identification of rice grain proteins. With a label free shotgun proteomic approach, we identified large number of rice grain proteins and compared the expression patterns of reproducibly identified proteins during rice grain development. Clustering analysis, Genome Ontology category enrichment analysis, and the analysis of composite expression profiles revealed dynamic changes of metabolisms during rice grain development. Interestingly, we
Strength of initially virgin martensites at - 196 °C after aging and tempering

Science.gov (United States)

Eldis, George T.; Cohen, Morris

1983-06-01

The compressive strength at -196°C of martensites in Fe-0.26 pct C-24 pct Ni, Fe-0.4 pct C-21 pct Ni, and Fe-0.4 pct C-18 pct Ni-3 pct Mo alloys, all with subzero M temperatures, has been determined in the virgin condition and after one hour at temperatures from -80 to +400 °C. The effects of ausforming (20 pct reduction in area of the austenite by swaging at room temperature prior to the martensitic transformation) were also investigated. For the unausformed martensites, aging at temperatures up to 0 °C results in relatively small increases in strength. Above 0 °C, the age hardening increment increases rapidly, reaching a maximum at 100 °C. Above 100 °C, the strength decreases continuously with increasing tempering temperature except for the molybdenum-containing alloy, which exhibits secondary hardening on tempering at 400 °C. For the ausformed martensites, the response to aging at subzero temperatures is greater than for unausformed material. Strength again passes through a maximum on aging at 100 °C. However, on tempering just above 100 °C, the ausformed materials show a slower rate of softening than the unausformed martensites. The strengthening produced by the ausforming treatment is largest for the Fe-0.4 pct C-18 pct Ni-3 pct Mo alloy, but there is no evidence of carbide precipitation in the deformed austenite to a°Count for this effect of molybdenum.

Microstructural characterisation of a P91 steel normalised and tempered at different temperatures

International Nuclear Information System (INIS)

Hurtado-Norena, C.; Danon, C.A.; Luppo, M.I.; Bruzzoni, P.

2015-01-01

9%Cr-1%Mo martensitic-ferritic steels are used in power plant components with operating temperatures of around 600 deg. C because of their good mechanical properties at high temperature as well as good oxidation resistance. These steels are generally used in the normalised and tempered condition. This treatment results in a structure of tempered lath martensite where the precipitates are distributed along the lath interfaces and within the martensite laths. The characterisation of these precipitates is of fundamental importance because of their relationship with the creep behaviour of these steels in service. In the present work, the different types of precipitates found in these steels have been studied on specimens in different metallurgical conditions. The techniques used in this investigation were X-ray diffraction with synchrotron light, scanning electron microscopy, energy dispersive microanalysis and transmission electron microscopy. (authors)
Quantity component of the effectiveness of seed dispersal by birds in the temperate rainforest of Chiloé, Chile

OpenAIRE

Salvande, Miguel; Figueroa, Javier A; Armesto, Juan J

2011-01-01

The quantity component of the disperser effectiveness of resident birds during the autumn-winter period has not yet been detailed in temperate rainforests of South America. In this study, the potentially frugivorous bird species in the temperate rainforests of southern Chile during the Austral autumn-winter were identified, and the quantity component of the disperser effectiveness of the birds (number of visits and number of seeds dispersed per hour) were evaluated for the tree species Luma a...
Development of 13 microsatellites for Gunnison Sage-grouse (Centrocercus minimus) using next-generation shotgun sequencing and their utility in Greater Sage-grouse (Centrocercus urophasianus)

Science.gov (United States)

Fike, Jennifer A.; Oyler-McCance, Sara J.; Zimmerman, Shawna J; Castoe, Todd A.

2015-01-01

Gunnison Sage-grouse are an obligate sagebrush species that has experienced significant population declines and has been proposed for listing under the U.S. Endangered Species Act. In order to examine levels of connectivity among Gunnison Sage-grouse leks, we identified 13 novel microsatellite loci though next-generation shotgun sequencing, and tested them on the closely related Greater Sage-grouse. The number of alleles per locus ranged from 2 to 12. No loci were found to be linked, although 2 loci revealed significant departures from Hardy–Weinberg equilibrium or evidence of null alleles. While these microsatellites were designed for Gunnison Sage-grouse, they also work well for Greater Sage-grouse and could be used for numerous genetic questions including landscape and population genetics.
Influence of tempering on mechanical strains in Mo2Si films

International Nuclear Information System (INIS)

Zscheile, H.D.

1984-01-01

Amorphous or crystalline MoSi 2 films on (111) silicon wafers, deposited by DC triode sputtering, showed compressive stress. Tensile stress was found in the same films formed by dual electron beam evaporation. By isochronous tempering in the temperature range of 300 to 1270 K the compressive stress of the sputtered films was converted into tensile stress
Estimating Janka hardness from specific gravity for tropical and temperate species

Science.gov (United States)

Michael C. Wiemann; David W. Green

2007-01-01

Using mean values for basic (green) specific gravity and Janka side hardness for individual species obtained from the world literature, regression equations were developed to predict side hardness from specific gravity. Statistical and graphical methods showed that the hardnessâspecific gravity relationship is the same for tropical and temperate hardwoods, but that the...
The effects of warming and nitrogen addition on soil nitrogen cycling in a temperate grassland, northeastern China.

Directory of Open Access Journals (Sweden)

Lin-Na Ma

Full Text Available Both climate warming and atmospheric nitrogen (N deposition are predicted to affect soil N cycling in terrestrial biomes over the next century. However, the interactive effects of warming and N deposition on soil N mineralization in temperate grasslands are poorly understood.A field manipulation experiment was conducted to examine the effects of warming and N addition on soil N cycling in a temperate grassland of northeastern China from 2007 to 2009. Soil samples were incubated at a constant temperature and moisture, from samples collected in the field. The results showed that both warming and N addition significantly stimulated soil net N mineralization rate and net nitrification rate. Combined warming and N addition caused an interactive effect on N mineralization, which could be explained by the relative shift of soil microbial community structure because of fungal biomass increase and strong plant uptake of added N due to warming. Irrespective of strong intra- and inter-annual variations in soil N mineralization, the responses of N mineralization to warming and N addition did not change during the three growing seasons, suggesting independence of warming and N responses of N mineralization from precipitation variations in the temperate grassland.Interactions between climate warming and N deposition on soil N cycling were significant. These findings will improve our understanding on the response of soil N cycling to the simultaneous climate change drivers in temperate grassland ecosystem.
Toxicity at the Edge of Life: A Review on Cyanobacterial Toxins from Extreme Environments

OpenAIRE

Cir?s, Samuel; Casero, Mar?a Cristina; Quesada, Antonio

2017-01-01

Cyanotoxins are secondary metabolites produced by cyanobacteria, of varied chemical nature and toxic effects. Although cyanobacteria thrive in all kinds of ecosystems on Earth even under very harsh conditions, current knowledge on cyanotoxin distribution is almost restricted to freshwaters from temperate latitudes. In this review, we bring to the forefront the presence of cyanotoxins in extreme environments. Cyanotoxins have been reported especially in polar deserts (both from the Arctic and ...
In-situ analysis of redistribution of carbon and nitrogen during tempering of low interstitial martensitic stainless steel

DEFF Research Database (Denmark)

Niessen, F.; Villa, M.; Danoix, F.

2018-01-01

The redistribution of C and N during tempering of X4CrNiMo16-5-1 martensitic stainless steel containing 0.034 wt% C and 0.032 wt% N was studied using in-situ synchrotron X-ray diffraction (XRD) and atom probe tomography (APT). The unit cell volume of martensite decreased continuously during...... tempering. APT showed that this volume decrease is accounted entirely for by segregation of the interstitial atoms, implying that in low interstitial martensitic stainless steel stress relaxation only contributes negligibly to changes in the martensite unit cell volume....
Arthropod vertical stratification in temperate deciduous forests: Implications for conservation oriented management

Science.gov (United States)

Ulyshen Michael

2011-01-01

Studies on the vertical distribution patterns of arthropods in temperate deciduous forests reveal highly stratified (i.e., unevenly vertically distributed) communities. These patterns are determined by multiple factors acting simultaneously, including: (1) time (forest age, season, time of day); (2) forest structure (height, vertical foliage complexity, plant surface...
Comparison of seasonal soil microbial process in snow-covered temperate ecosystems of northern China.

Directory of Open Access Journals (Sweden)

Xinyue Zhang

Full Text Available More than half of the earth's terrestrial surface currently experiences seasonal snow cover and soil frost. Winter compositional and functional investigations in soil microbial community are frequently conducted in alpine tundra and boreal forest ecosystems. However, little information on winter microbial biogeochemistry is known from seasonally snow-covered temperate ecosystems. As decomposer microbes may differ in their ability/strategy to efficiently use soil organic carbon (SOC within different phases of the year, understanding seasonal microbial process will increase our knowledge of biogeochemical cycling from the aspect of decomposition rates and corresponding nutrient dynamics. In this study, we measured soil microbial biomass, community composition and potential SOC mineralization rates in winter and summer, from six temperate ecosystems in northern China. Our results showed a clear pattern of increased microbial biomass C to nitrogen (N ratio in most winter soils. Concurrently, a shift in soil microbial community composition occurred with higher fungal to bacterial biomass ratio and gram negative (G- to gram positive (G+ bacterial biomass ratio in winter than in summer. Furthermore, potential SOC mineralization rate was higher in winter than in summer. Our study demonstrated a distinct transition of microbial community structure and function from winter to summer in temperate snow-covered ecosystems. Microbial N immobilization in winter may not be the major contributor for plant growth in the following spring.
Seed dispersal by fishes in tropical and temperate fresh waters: The growing evidence

NARCIS (Netherlands)

Horn, M.H.; Correa, S.B.; Parolin, P.; Pollux, B.J.A.; Anderson, J.T.; Lucas, C.; Widmann, P.; Tjiu, A.; Galetti, M.; Goulding, M.

2011-01-01

Fruit-eating by fishes represents an ancient (perhaps Paleozoic) interaction increasingly regarded as important for seed dispersal (ichthyochory) in tropical and temperate ecosystems. Most of the more than 275 known frugivorous species belong to the mainly Neotropical Characiformes (pacus, piranhas)
Can Detectability Analysis Improve the Utility of Point Counts for Temperate Forest Raptors?

Science.gov (United States)

Temperate forest breeding raptors are poorly represented in typical point count surveys because these birds are cryptic and typically breed at low densities. In recent years, many new methods for estimating detectability during point counts have been developed, including distanc...
Efficient assignment of the temperature set for Parallel Tempering

International Nuclear Information System (INIS)

Guidetti, M.; Rolando, V.; Tripiccione, R.

2012-01-01

We propose a simple algorithm able to identify a set of temperatures for a Parallel Tempering Monte Carlo simulation, that maximizes the probability that the configurations drift across all temperature values, from the coldest to the hottest ones, and vice versa. The proposed algorithm starts from data gathered from relatively short Monte Carlo simulations and is straightforward to implement. We assess its effectiveness on a test case simulation of an Edwards–Anderson spin glass on a lattice of 12 3 sites.
The Influence of Free Space Environment in the Mission Life Cycle: Material Selection

Science.gov (United States)

Edwards, David L.; Burns, Howard D.; de Groh, Kim K.

2014-01-01

The natural space environment has a great influence on the ability of space systems to perform according to mission design specification. Understanding the natural space environment and its influence on space system performance is critical to the concept formulation, design, development, and operation of space systems. Compatibility with the natural space environment is a primary factor in determining the functional lifetime of the space system. Space systems being designed and developed today are growing in complexity. In many instances, the increased complexity also increases its sensitivity to space environmental effects. Sensitivities to the natural space environment can be tempered through appropriate design measures, material selection, ground processing, mitigation strategies, and/or the acceptance of known risks. The design engineer must understand the effects of the natural space environment on the space system and its components. This paper will discuss the influence of the natural space environment in the mission life cycle with a specific focus on the role of material selection.
Forecasting cyanobacteria dominance in Canadian temperate lakes.

Science.gov (United States)

Persaud, Anurani D; Paterson, Andrew M; Dillon, Peter J; Winter, Jennifer G; Palmer, Michelle; Somers, Keith M

2015-03-15

Predictive models based on broad scale, spatial surveys typically identify nutrients and climate as the most important predictors of cyanobacteria abundance; however these models generally have low predictive power because at smaller geographic scales numerous other factors may be equally or more important. At the lake level, for example, the ability to forecast cyanobacteria dominance is of tremendous value to lake managers as they can use such models to communicate exposure risks associated with recreational and drinking water use, and possible exposure to algal toxins, in advance of bloom occurrence. We used detailed algal, limnological and meteorological data from two temperate lakes in south-central Ontario, Canada to determine the factors that are closely linked to cyanobacteria dominance, and to develop easy to use models to forecast cyanobacteria biovolume. For Brandy Lake (BL), the strongest and most parsimonious model for forecasting % cyanobacteria biovolume (% CB) included water column stability, hypolimnetic TP, and % cyanobacteria biovolume two weeks prior. For Three Mile Lake (TML), the best model for forecasting % CB included water column stability, hypolimnetic TP concentration, and 7-d mean wind speed. The models for forecasting % CB in BL and TML are fundamentally different in their lag periods (BL = lag 1 model and TML = lag 2 model) and in some predictor variables despite the close proximity of the study lakes. We speculate that three main factors (nutrient concentrations, water transparency and lake morphometry) may have contributed to differences in the models developed, and may account for variation observed in models derived from large spatial surveys. Our results illustrate that while forecast models can be developed to determine when cyanobacteria will dominate within two temperate lakes, the models require detailed, lake-specific calibration to be effective as risk-management tools. Copyright © 2015 Elsevier Ltd. All rights reserved.
Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments.

Science.gov (United States)

Port, Jesse A; Cullen, Alison C; Wallace, James C; Smith, Marissa N; Faustman, Elaine M

2014-03-01

High-throughput genomic technologies offer new approaches for environmental health monitoring, including metagenomic surveillance of antibiotic resistance determinants (ARDs). Although natural environments serve as reservoirs for antibiotic resistance genes that can be transferred to pathogenic and human commensal bacteria, monitoring of these determinants has been infrequent and incomplete. Furthermore, surveillance efforts have not been integrated into public health decision making. We used a metagenomic epidemiology-based approach to develop an ARD index that quantifies antibiotic resistance potential, and we analyzed this index for common modal patterns across environmental samples. We also explored how metagenomic data such as this index could be conceptually framed within an early risk management context. We analyzed 25 published data sets from shotgun pyrosequencing projects. The samples consisted of microbial community DNA collected from marine and freshwater environments across a gradient of human impact. We used principal component analysis to identify index patterns across samples. We observed significant differences in the overall index and index subcategory levels when comparing ecosystems more proximal versus distal to human impact. The selection of different sequence similarity thresholds strongly influenced the index measurements. Unique index subcategory modes distinguished the different metagenomes. Broad-scale screening of ARD potential using this index revealed utility for framing environmental health monitoring and surveillance. This approach holds promise as a screening tool for establishing baseline ARD levels that can be used to inform and prioritize decision making regarding management of ARD sources and human exposure routes. Port JA, Cullen AC, Wallace JC, Smith MN, Faustman EM. 2014. Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments. Environ Health Perspect 122:222–228; http://dx.doi.org/10.1289/ehp
Effect of Microstructures and Tempering Heat Treatment on the Mechanical Properties of 9Cr-2W Reduced-Activation Ferritic-Martensitic Steel

International Nuclear Information System (INIS)

Park, Min-Gu; Kang, Nam Hyun; Moon, Joonoh; Lee, Tae-Ho; Lee, Chang-Hoon; Kim, Hyoung Chan

2015-01-01

The aim of this study was to investigate the effect of microstructures (martensite, ferrite, or mixed ferrite and martensite) on the mechanical properties. Of particular interest was the Charpy impact results for 9Cr-2W reduced-activation ferritic-martensitic (RAFM) steels. Under normalized conditions, steel with martensitic microstructure showed superior tensile strength and Charpy impact results. This may result from auto-tempering during the transformation of martensite. On the other hand, both ferrite, and ferrite mixed with martensite, showed unusually poor Charpy impact results. This is because the ferrite phases, and coarse M_23C_6 carbides at the ferrite-grain boundaries acted as cleavage crack propagation paths, and as preferential initiation sites for cleavage cracks, respectively. After the tempering heat treatment, although tensile strength decreased, the energy absorbed during the Charpy impact test drastically increased for martensite, and ferrite mixed with martensite. This was due to the tempered martensite. On the other hand, there were no distinctive differences in tensile and Charpy impact properties of steel with ferrite microstructure, when comparing normalized and tempered conditions.
Perspectives for an integrated understanding of tropical and temperate high-mountain lakes

Directory of Open Access Journals (Sweden)

Jordi Catalan

2016-03-01

Full Text Available High mountain lakes are extreme freshwater ecosystems and excellent sentinels of current global change. They are likely among the most comparable ecosystems across the world. The largest contrast occurs between lakes in temperate and tropical areas. The main difference arises from the seasonal patterns of heat exchange and the external loadings (carbon, phosphorus, metals. The consequence is a water column structure based on temperature, in temperate lakes, and oxygen, in tropical lakes. This essential difference implies that, in tropical lakes, one can expect a more sustained productivity throughout the year; a higher nutrient internal loading based on the mineralization of external organic matter; higher nitrification-denitrification potential related to the oxyclines; and a higher metal mobilization due to the permanently reduced bottom layer. Quantifying and linking these and other biogeochemical pathways to particular groups of organisms is in the current agenda of high-mountain limnology. The intrinsic difficulties of the taxonomic study of many of the organisms inhabiting these systems can be now overcome with the use of molecular techniques. These techniques will not only provide a much less ambiguous taxonomic knowledge of the microscopic world, but also will unveil new biogeochemical pathways that are difficult to measure chemically and will solve biogeographical puzzles of the distribution of some macroscopic organism, tracing the relationship with other areas. Daily variability and vertical gradients in the tropics are the main factors of phytoplankton species turnover in tropical lakes; whereas seasonality is the main driver in temperate communities. The study of phytoplankton in high-mountain lakes only makes sense in an integrated view of the microscopic ecosystem. A large part of the plankton biomass is in heterotrophic, and mixotrophic organisms and prokaryotes compete for dissolved resources with eukaryotic autotrophs. In fact
Joints in Tempered Glass Using Glass Dowel Discs

DEFF Research Database (Denmark)

Nielsen, Jens Henrik; Poulsen, Peter Noe

One of the major reasons for using glass in structures is its transparency; however, traditional mechanical joints such as friction joints and steel dowel pinned connections are compromising the transparency. The present paper describes a novel joint which is practically maintaining the complete...... transparency of the glass. This is achieved by using a dowel disc made entirely of tempered glass. The concept of the joint is proved by pilot tests and numerical models. From the work it is seen that the load-carrying capacity of such a connection is similar to what is found for traditionally in-plane loaded...
Plant nutrient mobilization in temperate heathland responds to elevated CO2, temperature and drought

DEFF Research Database (Denmark)

Andresen, Louise C.; Michelsen, Anders; Jonasson, Sven

2010-01-01

Temperate terrestrial ecosystems are currently exposed to increased atmospheric CO2 and progressive climatic changes with increased temperature and periodical drought. We here present results from a field experiment, where the effects of these three main climate change related factors...... decreased in response to drought. These complex changes in availability and release of nutrients from soil organic matter turnover and mineralization in response to elevated CO2 and climate change may influence the future plant carbon sequestration and species composition at temperate heathlands....... in Deschampsia soil, and microbial immobilization of N and P decreased in warmed Calluna soil. Warming tended to increase microbial N and P in Calluna but not in Deschampsia soil in fall, and more microbial C was accumulated under drought in Calluna soil. The effects of warming were often counteracted or erased...

Prevalence and genetic variability of Plesiomonas shigelloides in temperate climate surface waters of the Pannonian Plain

Directory of Open Access Journals (Sweden)

Petrušić Milivoje

2018-01-01

Full Text Available Plesiomonas shigelloides, a Gram-negative bacterium and the causative agent of intestinal diseases and extraintestinal infections in humans and animals, is most frequently found in aquatic environments in tropical or subtropical areas. The present study was designed to establish the prevalence and genetic variability of P. shigelloides in surface waters (lakes, rivers, ponds, inlets and canals located in a temperate climate zone, namely the Pannonian Plain of the northern part of Serbia and southern part of Hungary. The strains were isolated directly by plating samples on inositol-brilliant green-bile agar with neutral red or phenol red as indicators. Our results indicate that phenol red effectively facilitates differentiation of P. shigelloides from other bacteria. A number of samples were enriched using alkaline peptone water broth, peptone inositolbile broth and tetrathionate broth. The recovery of the isolates was more successful with the first medium. Out of a total of 51 water samples collected from 28 different locations, 22 samples (43.1% were found positive for P. shigelloides. Among the 37 isolated strains, 34 were from lakes (Šatrinci, Ludaš, Panonija, Krivaja, Pecs, Kapetanski rit, Pavlovci, Kovacsszenaja, Dobrodol, Vranjaš, Borkovac, Hermann Otto, Sot, Šelevrenac, Zobnatica, Palić, Orfui, Jarkovci, Čonoplja and 3 were from rivers (Danube, Sava. The strains were identified by phenotypic characteristic or by the VITEK2 system and confirmed by PCR using 23S rRNA species-specific oligos. The strains showed a high genetic variability, displaying a variety of RAPD profiles. Our results reveal for the first time a high prevalence of genetically diverse P. shigelloides populations in surface waters located in the temperate climate of central and southeastern Europe. [Project of the Serbian Ministry of Education, Science and Technological Development, Grant no. OI 172058
Beneficial Effects of Temperate Forage Legumes that Contain Condensed Tannins

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Jennifer W. MacAdam

2015-07-01

Full Text Available The two temperate forage legumes containing condensed tannins (CT that promote ruminant production are birdsfoot trefoil (Lotus corniculatus L.; BFT and sainfoin (Onobrychis viciifolia Scop.; SF. Both are well-adapted to the cool-temperate climate and alkaline soils of the Mountain West USA. Condensed tannins comprise a diverse family of bioactive chemicals with multiple beneficial functions for ruminants, including suppression of internal parasites and enteric methane. Birdsfoot trefoil contains 10 to 40 g·CT·kg−1 dry matter (DM, while SF contains 30 to 80 g·CT·kg−1 DM. Our studies have focused on these two plant species and have demonstrated consistently elevated rates of gain for beef calves grazing both BFT and SF. Novel results from our BFT research include carcass dressing percentages and consumer sensory evaluations equivalent to feedlot-finished steers and significantly greater than grass-finished steers, but with omega-3 fatty acid concentrations equal to grass-finished beef. We have further demonstrated that ruminants fed BFT or SF will consume more endophyte-infected tall fescue (Schedonorus arundinaceus (Schreb. Dumort. forage or seed than ruminants fed a non-CT forage legume. There is great potential value for sustainable livestock production in the use of highly digestible, nitrogen-fixing legumes containing tannins demonstrated to improve ruminant productivity.
Temperate marine protected area provides recruitment subsidies to local fisheries.

Science.gov (United States)

Le Port, A; Montgomery, J C; Smith, A N H; Croucher, A E; McLeod, I M; Lavery, S D

2017-10-25

The utility of marine protected areas (MPAs) as a means of protecting exploited species and conserving biodiversity within MPA boundaries is supported by strong empirical evidence. However, the potential contribution of MPAs to fished populations beyond their boundaries is still highly controversial; empirical measures are scarce and modelling studies have produced a range of predictions, including both positive and negative effects. Using a combination of genetic parentage and relatedness analysis, we measured larval subsidies to local fisheries replenishment for Australasian snapper ( Chrysophrys auratus : Sparidae) from a small (5.2 km 2 ), well-established, temperate, coastal MPA in northern New Zealand. Adult snapper within the MPA contributed an estimated 10.6% (95% CI: 5.5-18.1%) of newly settled juveniles to surrounding areas (approx. 400 km 2 ), with no decreasing trend in contributions up to 40 km away. Biophysical modelling of larval dispersal matched experimental data, showing larvae produced inside the MPA dispersed over a comparable distance. These results demonstrate that temperate MPAs have the potential to provide recruitment subsidies at magnitudes and spatial scales relevant to fisheries management. The validated biophysical model provides a cost-efficient opportunity to generalize these findings to other locations and climate conditions, and potentially informs the design of MPA networks for enhancing fisheries management. © 2017 The Author(s).
Preparation and characterization of tempered tungsten layers on single crystalline silicon

International Nuclear Information System (INIS)

Nitzsche, K.; Knedlik, C.; Tippmann, H.; Spiess, L.; Harman, R.; Vanek, O.; Tvarozek, V.

1984-01-01

Tungsten layers have been deposited on single crystalline silicon by sputtering and characterized by measurements of the sheet resistance by a linear four point method and the van der Pauw method. The influence of tempering under argon on the resistance has been studied. By means of the RBS spectroscopy it was found that the increase in the specific resistance is caused by interdiffusion
Effects of the carbides precipitation on the hydrogen diffusion in a low carbon steel quenched and tempered

International Nuclear Information System (INIS)

Luppo, M.I.; Ovejero Garcia, J.

1996-01-01

Hydrogen diffusivity through steels at room temperature has been known to deviate considerably from the expected Arrhenius relation. This deviation is due to the attractive interactions between dissolved hydrogen and trapping sites (imperfections in the steel lattice). In a previous work it was shown that the apparent diffusion coefficients attain a minimum value in a fresh martensite and diffusivity increases in the same material tempered at 453 k during six hours. In order to explain this difference, the variation of hydrogen trapping sites with the tempering time, at the mentioned temperature, was studied by means of hydrogen permeation tests. Carbides precipitation was followed by means of the extraction replica technique using transmission electron microscopy. The hydrogen diffusivity obtained by the hydrogen permeation tests attained a minimum value in the quenched specimens and increased with increasing tempering time up to reach a constant value between three and six hours. This change in the hydrogen diffusivity was attributed to the trapping sites decrease promoted by carbides precipitation and their precipitation kinetics was described by an Avrami equation. (author). 4 refs., 4 figs
Nitrous oxide production from temperate and tropical oyster species in response to nutrient loading

Science.gov (United States)

Chan, H.; Garate, M.; Moseman-Valtierra, S.

2016-02-01

Anthropogenic pollution, such as nitrogen (N), has the potential to increase greenhouse gas (GHG) emissions in marine ecosystems. Some organisms can be used as important biological indicators for GHG emissions to their environment based on their feeding habits. With large inputs of these anthropogenic pollutants, emissions of nitrous oxide (N2O), a potent GHG, can be potentially increased from temperate invertebrates, though not much is known about tropical invertebrates. Thus, we compared N2O emissions in response to N additions from the temperate oyster species Crassostrea virginica and compared it to a tropical species, Isognomon alatus, found in Puerto Rico. Oysters were exposed to two seawater treatments: (1) no nutrient addition (control) and (2) 100µM ammonium nitrate. Each treatment had 4-5 replicates. Measurements for dissolved N2O and nutrients were taken at the start of the incubation and then at two, four, and five hours by collecting water samples of each tank. Dissolved N2O concentrations were analyzed using gas chromatography. We hypothesized that the N addition treatment would produce more N2O for both Rhode Island and Puerto Rico. We found that there was no significant difference between the control and N enriched treatments for C. virginica over the short timespan, although the N enriched treatment did have a steady trend in increasing in N2O concentration over time. Further analysis is needed for the I. alatus, though we expect an increase in N2O emissions due to warmer water temperatures, which might enhance microbial metabolism and production of N2O. This differs from work previously done in a long-term experiment on C. virginica, which showed that N2O significantly in the N enriched treatment over 28-days. Our study shows that short-term pulses of N may not potentially increase N2O emissions, though further analysis is needed for longer-term exposures.
Synthesis on the carbon budget and cycling in a Danish, temperate deciduous forest

DEFF Research Database (Denmark)

Wu, Jian; Larsen, Klaus Steenberg; van der Linden, Leon

2013-01-01

A synthesis of five years (2006–2010) of data on carbon cycling in a temperate deciduous forest, Sorø (Zealand, Denmark) was performed by combining all available data from eddy covariance, chamber, suction cups, and biometric measurements. The net ecosystem exchange of CO2 (NEE), soil respiration...... within the ecosystem. The results showed that this temperate deciduous forest was a moderate carbon sink (258±41gCm−2 yr−1) with both high rates of gross primary production (GPP, 1881±95gCm−2 yr−1) and ecosystem respiration (Re, 1624±197gCm−2 yr−1). Approximately 62% of the gross assimilated carbon......, tree growth, litter production and leaching of dissolved inorganic and organic carbon were independently estimated and used to calculate other unmeasured ecosystem carbon budget (ECB) components, based on mass balance equations. This provided a complete assessment of the carbon storage and allocation...
Ecological legacies of Indigenous fire management in high-latitude coastal temperate rainforests, Canada

Science.gov (United States)

Hoffman, K.; Lertzman, K. P.; Starzomski, B. M.

2016-12-01

Anthropogenic burning is considered to have little impact on coastal temperate rainforest fire regimes in the Pacific Northwest (PNW) of North America, yet few long-term fire histories have been reconstructed in these forests. We use a multidisciplinary approach to reconstruct the ecological impact, scale, and legacies of historic fire regime variability in high-latitude coastal temperate rainforests located in British Columbia, Canada. We map seven centuries of fire activity with fire scars and records of stand establishment, and examine patterns in the distribution and composition of vegetation to assess whether fire was historically used as a tool for resource management. We conduct a paired study of 20 former Indigenous habitation and control sites across a 100 km2 island group to relate historic fire activity with long-term patterns of human land use and contemporary lightning strike densities. Fires were significantly associated with the locations of former Indigenous habitation sites, low and mixed in severity, and likely intentionally used to influence the composition and structure of vegetation, thus increasing the productivity of culturally important plants such as western redcedar, berry-producing shrubs, and bracken fern. Centuries of repeated anthropogenic burning have resulted in a mosaic of vegetation types in different stages of succession. These data are directly relevant to the management of contemporary forests as they do not support the widespread contention that old growth coastal temperate rainforests in this region are pristine landscapes where fire is rare, but more likely the result of long-term human land use practices.
[Odocoileus virginianus diet (Artiodactyla: Cervidae) in a temperate forest of Northern Oaxaca, Mexico].

Science.gov (United States)

González, Graciela; Briones-Salas, Miguel

2012-03-01

The Sierra Madre de Oaxaca region, located in the Northern state of Oaxaca, Mexico, is an area of forest ecosystems subject to high exploitation rates, although in some areas its temperate forests are conserved by indigenous community initiatives that live there. We analyzed the diet of white tailed-deer (Odocoileus virginianus) in the localities of Santa Catarina Lachatao and San Miguel Amatlán from June 1998 to August 1999. Sampling was done during both the wet and dry seasons, and included the observation of browsing traces (238 observations), microhistological analysis of deer feces (28 deer pellet-groups), and two stomach content analysis. The annual diet of white-tailed deer was composed of 42 species from 23 botanical families. The most represented families in the diet of this deer were Fagaceae, Asteraceae, Ericaceae and Fabaceae. There were significant differences in the alpha diversity of the diet during the wet and dry seasons (H'=2.957 and H'=1.832, respectively). The similarity percentage between seasons was 56%. Differences in plant species frequency were significantly higher during the wet season. Herbaceous plants made up the greatest percentage of all the species consumed. The preferred species throughout the year were Senecio sp. (shrub), Sedum dendroideum (herbaceous), Arctostaphylos pungens (shrub) and Satureja macrostema (shrub). Diet species richness was found to be lower than that observed in a tropical forest (Venezuela), tropical dry forest (Mexico) and temperate deciduous and mixed forest (Mexico), but similar to the diet species richness observed in a tropical dry forest (Costa Rica) and temperate coniferous and deciduous forests (USA).
Evolutionary and ecological differentiation in the pantropical to warm-temperate seaweed Digenea simplex (Rhodophyta)

NARCIS (Netherlands)

Pakker, H; Klerk, H; vanCampen, JH; Olsen, JL; Breeman, AM

Genetic differentiation among geographic isolates of the pantropical to warm-temperate red alga Digenea simplex (Wulfen) C. Agardh was investigated using random amplified polymorphic DNA (RAPD) markers, crossing studies, and temperature tolerances experiments. Eleven isolates representing
Shotgun proteomics deciphered age/division of labor-related functional specification of three honeybee (Apis mellifera L.) exocrine glands.

Science.gov (United States)

Fujita, Toshiyuki; Kozuka-Hata, Hiroko; Hori, Yutaro; Takeuchi, Jun; Kubo, Takeo; Oyama, Masaaki

2018-01-01

The honeybee (Apis mellifera L.) uses various chemical signals produced by the worker exocrine glands to maintain the functioning of its colony. The roles of worker postcerebral glands (PcGs), thoracic glands (TGs), and mandibular glands (MGs) and the functional changes they undergo according to the division of labor from nursing to foraging are not as well studied. To comprehensively characterize the molecular roles of these glands in workers and their changes according to the division of labor of workers, we analyzed the proteomes of PcGs, TGs, and MGs from nurse bees and foragers using shotgun proteomics technology. We identified approximately 2000 proteins from each of the nurse bee or forager glands and highlighted the features of these glands at the molecular level by semiquantitative enrichment analyses of frequently detected, gland-selective, and labor-selective proteins. First, we found the high potential to produce lipids in PcGs and MGs, suggesting their relation to pheromone production. Second, we also found the proton pumps abundant in TGs and propose some transporters possibly related to the saliva production. Finally, our data unveiled candidate enzymes involved in labor-dependent acid production in MGs.
Restoration of a boulder reef in temperate waters: Strategy, methodology and lessons learnt

DEFF Research Database (Denmark)

Støttrup, Josianne Gatt; Dahl, Karsten; Niemann, Sanne

2017-01-01

Anthropogenic impacts on marine habitats are a global problem, particularly in coastal areas. While boulder reefs in temperate waters hold high biomass and biodiversity, and may be unable to recover from anthropogenic stressors without restoration efforts, little is known about how to restore and...
Seagrasses under threat: Understanding the resilience of temperate seagrass meadows in a changing environment

NARCIS (Netherlands)

Soissons, L.M.

2017-01-01

Despite being highly valuable ecosystems, seagrass meadows are threatened worldwide, mostly by human activities. In order to preserve seagrass meadows from collapse, we need to better understand their resilience in a changing environment. By means of various
Do ectomycorrhizal and arbuscular mycorrhizal temperate tree species systematically differ in root order-related fine root morphology and biomass?

OpenAIRE

Kubisch, Petra; Hertel, Dietrich; Leuschner, Christoph

2015-01-01

While most temperate broad-leaved tree species form ectomycorrhizal (EM) symbioses, a few species have arbuscular mycorrhizas (AM). It is not known whether EM and AM tree species differ systematically with respect to fine root morphology, fine root system size and root functioning. In a species-rich temperate mixed forest, we studied the fine root morphology and biomass of three EM and three AM tree species from the genera Acer, Carpinus, Fagus, Fraxinus, and Tilia searching for principal dif...
Summertime elemental mercury exchange of temperate grasslands on an ecosystem-scale

Science.gov (United States)

Fritsche, J.; Wohlfahrt, G.; Ammann, C.; Zeeman, M.; Hammerle, A.; Obrist, D.; Alewell, C.

2013-01-01

In order to estimate the air-surface mercury exchange of grasslands in temperate climate regions, fluxes of gaseous elemental mercury (GEM) were measured at two sites in Switzerland and one in Austria during summer 2006. Two classic micrometeorological methods (aerodynamic and modified Bowen ratio) have been applied to estimate net GEM exchange rates and to determine the response of the GEM flux to changes in environmental conditions (e.g. heavy rain, summer ozone) on an ecosystem-scale. Both methods proved to be appropriate to estimate fluxes on time scales of a few hours and longer. Average dry deposition rates up to 4.3 ng m−2 h−1 and mean deposition velocities up to 0.10 cm s−1 were measured, which indicates that during the active vegetation period temperate grasslands are a small net sink for atmospheric mercury. With increasing ozone concentrations depletion of GEM was observed, but could not be quantified from the flux signal. Night-time deposition fluxes of GEM were measured and seem to be the result of mercury co-deposition with condensing water. Effects of grass cuts could also be observed, but were of minor magnitude. PMID:24348525
The influence of silicon in tempered martensite: Understanding the microstructure–properties relationship in 0.5–0.6 wt.% C steels

International Nuclear Information System (INIS)

Kim, B.; Boucard, E.; Sourmail, T.; San Martín, D.; Gey, N.; Rivera-Díaz-del-Castillo, P.E.J.

2014-01-01

The strengthening contributions in medium-carbon tempered martensite are unveiled in this work. By using transmission electron microscopy and synchrotron radiation X-ray diffraction, the different microstructural features have been captured; these include precipitation, grain boundary, solid solution and dislocation forest strengthening. The evolution of these features was observed as a function of tempering temperature and silicon content. In trying to elucidate the nature of grain boundary strengthening, three approaches are presented, including a plasticity model based on irreversible thermodynamics, misorientation angle characterization by electron backscatter diffraction, and transmission electron microscopy analysis of failed regions. Based on the findings, it is concluded that silicon inhibits martensite recovery, and that at low tempering temperatures, lath boundaries also appear to contribute to strengthening
Comparative study of label and label-free techniques using shotgun proteomics for relative protein quantification.

Science.gov (United States)

Sjödin, Marcus O D; Wetterhall, Magnus; Kultima, Kim; Artemenko, Konstantin

2013-06-01

The analytical performance of three different strategies, iTRAQ (isobaric tag for relative and absolute quantification), dimethyl labeling (DML) and label free (LF) for relative protein quantification using shotgun proteomics have been evaluated. The methods have been explored using samples containing (i) Bovine proteins in known ratios and (ii) Bovine proteins in known ratios spiked into Escherichia coli. The latter case mimics the actual conditions in a typical biological sample with a few differentially expressed proteins and a bulk of proteins with unchanged ratios. Additionally, the evaluation was performed on both QStar and LTQ-FTICR mass spectrometers. LF LTQ-FTICR was found to have the highest proteome coverage while the highest accuracy based on the artificially regulated proteins was found for DML LTQ-FTICR (54%). A varying linearity (k: 0.55-1.16, r(2): 0.61-0.96) was shown for all methods within selected dynamic ranges. All methods were found to consistently underestimate Bovine protein ratios when matrix proteins were added. However, LF LTQ-FTICR was more tolerant toward a compression effect. A single peptide was demonstrated to be sufficient for a reliable quantification using iTRAQ. A ranking system utilizing several parameters important for quantitative proteomics demonstrated that the overall performance of the five different methods was; DML LTQ-FTICR>iTRAQ QStar>LF LTQ-FTICR>DML QStar>LF QStar. Copyright © 2013 Elsevier B.V. All rights reserved.
The relative roles of local climate adaptation and phylogeny in determining leaf-out timing of temperate tree species

Directory of Open Access Journals (Sweden)

Elsa Desnoues

2017-12-01

Full Text Available Background Leaf out times of temperate forest trees are a prominent determinant of global carbon dynamics throughout the year. Abiotic cues of leaf emergence are well studied but investigation of the relative roles of shared evolutionary history (phylogeny and local adaptation to climate in determining the species-level responses to these cues is needed to better apprehend the effect of global change on leaf emergence. We explored the relative importance of phylogeny and climate in determining the innate leaf out phenology across the temperate biome. Methods We used an extensive dataset of leaf-out dates of 1126 temperate woody species grown in eight Northern Hemisphere common gardens. For these species, information on the native climate and phylogenetic position was collected. Using linear regression analyses, we examine the relative effect of climate variables and phylogeny on leaf out variation among species. Results Climate variables explained twice as much variation in leaf out timing as phylogenetic information, a process that was driven primarily by the complex interactive effects of multiple climate variables. Although the primary climate factors explaining species-level variation in leaf-out timing varied drastically across different families, our analyses reveal that local adaptation plays a stronger role than common evolutionary history in determining tree phenology across the temperate biome. Conclusions In the long-term, the direct effects of physiological adaptation to abiotic effects of climate change on forest phenology are likely to outweigh the indirect effects mediated through changes in tree species composition.
Invasion of the tropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Oligochaeta in temperate grasslands

Directory of Open Access Journals (Sweden)

Diana Ortiz-Gamino

2016-10-01

Full Text Available The tropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Oligochaeta presents a broad distribution (e.g., 56 countries from four continents. It is generally assumed that temperature appears to limit the success of tropical exotic species in temperate climates. However, the distribution range of this species could advance towards higher elevations (with lower temperatures where no tropical species currently occur. The aim of this study was to evaluate the soil and climatic variables that could be closely associated with the distribution of P. corethrurus in four sites along an altitudinal gradient in central Veracruz, Mexico. We predicted that the distribution of P. corethrurus would be more related to climate variables than edaphic parameters. Five sampling points (in the grassland were established at each of four sites along an altitudinal gradient: Laguna Verde (LV, La Concepción (LC, Naolinco (NA and Acatlán (AC at 11–55, 992–1,025, 1,550–1,619 y 1,772–1,800 masl, respectively. The climate ranged from tropical to temperate along the altitudinal gradient. Ten earthworm species (5 Neotropical, 4 Palearctic and 1 Nearctic were found along the gradient, belonging to three families (Rhinodrilidae, Megascolecide and Lumbricidae. Soil properties showed a significant association (positive for Ngrass, pH, permanent wilting point, organic matter and P; and negative for Total N, K and water-holding capacity with the abundance of the earthworm community. Also there seems to be a relationship between climate and earthworm distribution along the altitudinal gradient. P. corethrurus was recorded at tropical (LV and LC and temperate sites (NA along the altitudinal gradient. Our results reveal that soil fertility determines the abundance of earthworms and site (climate can act as a barrier to their migration. Further research is needed to determine the genetic structure and lineages of P. corethrurus along altitudinal gradients.
Analysis of lipid experiments (ALEX: a software framework for analysis of high-resolution shotgun lipidomics data.

Directory of Open Access Journals (Sweden)

Peter Husen

Full Text Available Global lipidomics analysis across large sample sizes produces high-content datasets that require dedicated software tools supporting lipid identification and quantification, efficient data management and lipidome visualization. Here we present a novel software-based platform for streamlined data processing, management and visualization of shotgun lipidomics data acquired using high-resolution Orbitrap mass spectrometry. The platform features the ALEX framework designed for automated identification and export of lipid species intensity directly from proprietary mass spectral data files, and an auxiliary workflow using database exploration tools for integration of sample information, computation of lipid abundance and lipidome visualization. A key feature of the platform is the organization of lipidomics data in "database table format" which provides the user with an unsurpassed flexibility for rapid lipidome navigation using selected features within the dataset. To demonstrate the efficacy of the platform, we present a comparative neurolipidomics study of cerebellum, hippocampus and somatosensory barrel cortex (S1BF from wild-type and knockout mice devoid of the putative lipid phosphate phosphatase PRG-1 (plasticity related gene-1. The presented framework is generic, extendable to processing and integration of other lipidomic data structures, can be interfaced with post-processing protocols supporting statistical testing and multivariate analysis, and can serve as an avenue for disseminating lipidomics data within the scientific community. The ALEX software is available at www.msLipidomics.info.

Analysis of lipid experiments (ALEX): a software framework for analysis of high-resolution shotgun lipidomics data.

Science.gov (United States)

Husen, Peter; Tarasov, Kirill; Katafiasz, Maciej; Sokol, Elena; Vogt, Johannes; Baumgart, Jan; Nitsch, Robert; Ekroos, Kim; Ejsing, Christer S

2013-01-01

Global lipidomics analysis across large sample sizes produces high-content datasets that require dedicated software tools supporting lipid identification and quantification, efficient data management and lipidome visualization. Here we present a novel software-based platform for streamlined data processing, management and visualization of shotgun lipidomics data acquired using high-resolution Orbitrap mass spectrometry. The platform features the ALEX framework designed for automated identification and export of lipid species intensity directly from proprietary mass spectral data files, and an auxiliary workflow using database exploration tools for integration of sample information, computation of lipid abundance and lipidome visualization. A key feature of the platform is the organization of lipidomics data in "database table format" which provides the user with an unsurpassed flexibility for rapid lipidome navigation using selected features within the dataset. To demonstrate the efficacy of the platform, we present a comparative neurolipidomics study of cerebellum, hippocampus and somatosensory barrel cortex (S1BF) from wild-type and knockout mice devoid of the putative lipid phosphate phosphatase PRG-1 (plasticity related gene-1). The presented framework is generic, extendable to processing and integration of other lipidomic data structures, can be interfaced with post-processing protocols supporting statistical testing and multivariate analysis, and can serve as an avenue for disseminating lipidomics data within the scientific community. The ALEX software is available at www.msLipidomics.info.
Influence of different tree-harvesting intensities on forest soil carbon stocks in boreal and northern temperate forest ecosystems

DEFF Research Database (Denmark)

Clarke, Nicholas; Gundersen, Per; Jönsson-Belyazid, Ulrika

2015-01-01

) stocks. This paper reviews the findings in the scientific literature concerning the effects of harvesting of different intensities on SOC stocks and fluxes in boreal and northern temperate forest ecosystems to evaluate the evidence for significant SOC losses following biomass removal. An overview...... on SOC stocks in boreal and northern temperate forest ecosystems, which is in any case species-, site- and practice-specific. Properly conducted long-term experiments are therefore necessary to enable us to clarify the relative importance of different harvesting practices on the SOC stores, the key...
Phylogenetic constraints do not explain the rarity of nitrogen-fixing trees in late-successional temperate forests.

Science.gov (United States)

Menge, Duncan N L; DeNoyer, Jeanne L; Lichstein, Jeremy W

2010-08-06

Symbiotic nitrogen (N)-fixing trees are rare in late-successional temperate forests, even though these forests are often N limited. Two hypotheses could explain this paradox. The 'phylogenetic constraints hypothesis' states that no late-successional tree taxa in temperate forests belong to clades that are predisposed to N fixation. Conversely, the 'selective constraints hypothesis' states that such taxa are present, but N-fixing symbioses would lower their fitness. Here we test the phylogenetic constraints hypothesis. Using U.S. forest inventory data, we derived successional indices related to shade tolerance and stand age for N-fixing trees, non-fixing trees in the 'potentially N-fixing clade' (smallest angiosperm clade that includes all N fixers), and non-fixing trees outside this clade. We then used phylogenetically independent contrasts (PICs) to test for associations between these successional indices and N fixation. Four results stand out from our analysis of U.S. trees. First, N fixers are less shade-tolerant than non-fixers both inside and outside of the potentially N-fixing clade. Second, N fixers tend to occur in younger stands in a given geographical region than non-fixers both inside and outside of the potentially N-fixing clade. Third, the potentially N-fixing clade contains numerous late-successional non-fixers. Fourth, although the N fixation trait is evolutionarily conserved, the successional traits are relatively labile. These results suggest that selective constraints, not phylogenetic constraints, explain the rarity of late-successional N-fixing trees in temperate forests. Because N-fixing trees could overcome N limitation to net primary production if they were abundant, this study helps to understand the maintenance of N limitation in temperate forests, and therefore the capacity of this biome to sequester carbon.
Adaptive root foraging strategies along a boreal–temperate forest gradient

Czech Academy of Sciences Publication Activity Database

Ostonen, I.; Truu, M.; Helmisaari, H.-S.; Lukač, M.; Borken, W.; Vanguelova, H.; Godbold, Douglas; Löhmus, K.; Zang, U.; Tedersoo, L.; Preem, J.-K.; Rosenvald, K.; Aosaar, J.; Armolaitis, K.; Frey, J.; Kabral, N.; Kukumägi, M.; Leppälammi-Kujansuu, J.; Lindroos, A.-J.; Merila, P.; Napa, Ü.; Nöjd, P.; Parts, K.; Uri, V.; Varik, M.; Truu, J.

2017-01-01

Roč. 215, č. 3 (2017), s. 977-991 ISSN 0028-646X EU Projects: European Commission(XE) 315982; European Commission(XE) 315982; European Commission(XE) 90/E38 Institutional support: RVO:67179843 Keywords : boreal and temperate forests * climate gradient * ectomycorrhizal (EcM) mycelium * fine and ectomycorrhizal root biomass * root foraging * root morphology * soil and rhizosphere bacteria * soil C * N ratio Subject RIV: EF - Botanics OBOR OECD: Plant sciences, botany Impact factor: 7.330, year: 2016
Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae).

Science.gov (United States)

Zhang, Li-Na; Zhang, Xian-Zhi; Zhang, Yu-Xiao; Zeng, Chun-Xia; Ma, Peng-Fei; Zhao, Lei; Guo, Zhen-Hua; Li, De-Zhu

2014-09-01

The temperate woody bamboos (Arundinarieae) are highly diverse in morphology but lack a substantial amount of genetic variation. The taxonomy of this lineage is intractable, and the relationships within the tribe have not been well resolved. Recent studies indicated that this tribe could have a complex evolutionary history. Although phylogenetic studies of the tribe have been carried out, most of these phylogenetic reconstructions were based on plastid data, which provide lower phylogenetic resolution compared with nuclear data. In this study, we intended to identify a set of desirable nuclear genes for resolving the phylogeny of the temperate woody bamboos. Using two different methodologies, we identified 209 and 916 genes, respectively, as putative single copy orthologous genes. A total of 112 genes was successfully amplified and sequenced by next-generation sequencing technologies in five species sampled from the tribe. As most of the genes exhibited intra-individual allele heterozygotes, we investigated phylogenetic utility by reconstructing the phylogeny based on individual genes. Discordance among gene trees was observed and, to resolve the conflict, we performed a range of analyses using BUCKy and HybTree. While caution should be taken when inferring a phylogeny from multiple conflicting genes, our analysis indicated that 74 of the 112 investigated genes are potential markers for resolving the phylogeny of the temperate woody bamboos. © 2014 John Wiley & Sons Ltd.
Detrimental Influence of Invasive Earthworms on North American Cold-Temperate Forest Soils

Science.gov (United States)

Enerson, Isabel

2012-01-01

The topic of invasive earthworms is a timely concern that goes against many preconceived notions regarding the positive benefits of all worms. In the cold-temperate forests of North America invasive worms are threatening forest ecosystems, due to the changes they create in the soil, including decreases in C:N ratios and leaf litter, disruption of…
Soil quality differences in a mature alley cropping system in temperate North America

Science.gov (United States)

Alley cropping in agroforestry practices has been shown to improve soil quality, however information on long-term effects (>10 years) of alley cropping on soils in the temperate zone is very limited. The objective of this study was to examine effects of management, landscape, and soil depth on soil...
Drought enhances symbiotic dinitrogen fixation and competitive ability of a temperate forest tree

Science.gov (United States)

Nina Wurzburger; Chelcy Ford Miniat

2013-01-01

General circulation models project more intense and frequent droughts over the next century, but many questions remain about how terrestrial ecosystems will respond. Of particular importance, is to understand how drought will alter the species composition of regenerating temperate forests wherein symbiotic dinitrogen (N2)- fixing plants play a...
Consequences and potential problems of operating room outbursts and temper tantrums by surgeons.

Science.gov (United States)

Jacobs, George B; Wille, Rosanne L

2012-01-01

Anecdotal tales of colorful temper tantrums and outbursts by surgeons directed at operating room nurses and at times other health care providers, like residents and fellows, are part of the history of surgery and include not only verbal abuse but also instrument throwing and real harassment. Our Editor-in-Chief, Dr. Nancy Epstein, has made the literature review of "Are there truly any risks and consequences when spine surgeons mistreat their predominantly female OR nursing staff/colleagues, and what can we do about it?," an assigned topic for members of the editorial board as part of a new category entitled Ethical Note for our journal. This is a topic long overdue and I chose to research it. There is no medical literature to review dealing with nurse abuse. To research this topic, one has to involve business, industry, educational institutions, compliance standards and practices, and existing state and federal laws. I asked Dr. Rosanne Wille to co-author this paper since, as the former Dean of Nursing and then Provost and Senior Vice President for Academic Affairs at a major higher educational institution, she had personal experience with compliance regulations and both sexual harassment and employment discrimination complaints, to make this review meaningful. A review of the existing business practices and both state and federal laws strongly suggests that although there has not been any specific legal complaint that is part of the public record, any surgeon who chooses to act out his or her frustration and nervous energy demands by abusing co-workers on the health care team, and in this case specifically operating room personnel, is taking a chance of making legal history with financial outcomes which only an actual trial can predict or determine. Even more serious outcomes of an out-of-control temper tantrum and disruptive behavior can terminate, after multiple hearings and appeals, in adverse decisions affecting hospital privileges. Surgeons who abuse other
Effects of tempering (annealing), acid hydrolysis, low-citric acid substitution on chemical and physicochemical properties of starches of four yam (Dioscorea spp.) cultivars.

Science.gov (United States)

Falade, Kolawole O; Ayetigbo, Oluwatoyin E

2017-05-01

The effects of tempering (annealing), acid hydrolysis and low-citric acid substitution on chemical and physicochemical properties of starches of four Nigerian yam cultivars were investigated. Crude fat and protein contents of the native starches decreased significantly after the modifications, while nitrogen-free extract increased significantly with acid hydrolysis and citric acid substitution. Acid hydrolysis and low-citric acid substitution reduced the least concentration for gel formation of the starches from 4 to 2% w/v, but tempering had no effect. Swelling power of the starches reduced significantly, and water solubility increased significantly at 75 and 85 °C, especially with acid hydrolysis and low-citric acid substitution. However, tempering significantly reduced starch solubility in the four cultivars. Paste clarity of starches of white (29.17%), water (18.90%), yellow (30.90%) and bitter (10.57%) yams reduced significantly with tempering to 14.43, 11.83, 16.93 and 7.27%, but increased significantly with acid hydrolysis to 41.40, 35.37, 28.77 and 32.33%, and low-citric acid substitution to 36.60, 44.17, 50.67 and 14.33%, respectively. Pasting properties such as peak, trough, breakdown, final, and setback viscosities and peak time of native starches reduced significantly with acid hydrolysis and low-citric acid substitution, however, tempering significantly increased their pasting temperature, peak time, setback and final viscosities.
In Situ Investigation of the Evolution of Lattice Strain and Stresses in Austenite and Martensite During Quenching and Tempering of Steel

DEFF Research Database (Denmark)

Villa, M.; Niessen, F.; Somers, M. A. J.

2018-01-01

Energy dispersive synchrotron X-ray diffraction was applied to investigate in situ the evolution of lattice strains and stresses in austenite and martensite during quenching and tempering of a soft martensitic stainless steel. In one experiment, lattice strains in austenite and martensite were...... measured in situ in the direction perpendicular to the sample surface during an austenitization, quenching, and tempering cycle. In a second experiment, the sin2ψ method was applied in situ during the austenite-to-martensite transformation to distinguish between macro- and phase-specific micro......-stresses and to follow the evolution of these stresses during transformation. Martensite formation evokes compressive stress in austenite that is balanced by tensile stress in martensite. Tempering to 748 K (475 °C) leads to partial relaxation of these stresses. Additionally, data reveal that (elastic) lattice strain...
Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning

OpenAIRE

Preston Christina M; Steward Grieg F

2011-01-01

Abstract Background Viruses have a profound influence on both the ecology and evolution of marine plankton, but the genetic diversity of viral assemblages, particularly those in deeper ocean waters, remains poorly described. Here we report on the construction and analysis of a viral metagenome prepared from below the euphotic zone in a temperate, eutrophic bay of coastal California. Methods We purified viruses from approximately one cubic meter of seawater collected from 200m depth in Montere...
The Potential of Self-Tempered Martensite and Bainite in Improving the Fatigue Strength of Thermomechanically Processed Steels

Directory of Open Access Journals (Sweden)

Krupp Ulrich

2018-01-01

Full Text Available In contrast to a two-stage hardening and tempering process, the definition of optimized cooling routes after hot working of low-alloy Cr steel allows the adjustments of high-strength microstructures with a sufficient degree of ductility at the same time without any additional heat-treatment. While compressed air cooling after hot forging of micro-alloyed steel grades leads to the formation of lower bainite with finedispersed cementite platelets, quenching by water spray down to the martensite start temperature results in the formation of martensite, that is self-tempered during the subsequent slow-cooling in air. The precipitation of nano-sized cementite precipitates result in superior mechanical properties with respect to impact and tensile testing. Cyclic deformation and crack propagation tests being carried out using resonance testing (100Hz and ultrasonic fatigue testing (20kHz systems revealed a pronounced increase in fatigue strength by about 150MPa of the self-tempered martensite condition as compared to the bainitic modification. For the latter one, a steady decrease of the fatigue strength is observed rather than the existence of a real fatigue limit.
Chilling and heat requirements for flowering in temperate fruit trees.

Science.gov (United States)

Guo, Liang; Dai, Junhu; Ranjitkar, Sailesh; Yu, Haiying; Xu, Jianchu; Luedeling, Eike

2014-08-01

Climate change has affected the rates of chilling and heat accumulation, which are vital for flowering and production, in temperate fruit trees, but few studies have been conducted in the cold-winter climates of East Asia. To evaluate tree responses to variation in chill and heat accumulation rates, partial least squares regression was used to correlate first flowering dates of chestnut (Castanea mollissima Blume) and jujube (Zizyphus jujube Mill.) in Beijing, China, with daily chill and heat accumulation between 1963 and 2008. The Dynamic Model and the Growing Degree Hour Model were used to convert daily records of minimum and maximum temperature into horticulturally meaningful metrics. Regression analyses identified the chilling and forcing periods for chestnut and jujube. The forcing periods started when half the chilling requirements were fulfilled. Over the past 50 years, heat accumulation during tree dormancy increased significantly, while chill accumulation remained relatively stable for both species. Heat accumulation was the main driver of bloom timing, with effects of variation in chill accumulation negligible in Beijing’s cold-winter climate. It does not seem likely that reductions in chill will have a major effect on the studied species in Beijing in the near future. Such problems are much more likely for trees grown in locations that are substantially warmer than their native habitats, such as temperate species in the subtropics and tropics.
Chilling and heat requirements for flowering in temperate fruit trees

Science.gov (United States)

Guo, Liang; Dai, Junhu; Ranjitkar, Sailesh; Yu, Haiying; Xu, Jianchu; Luedeling, Eike

2014-08-01

Climate change has affected the rates of chilling and heat accumulation, which are vital for flowering and production, in temperate fruit trees, but few studies have been conducted in the cold-winter climates of East Asia. To evaluate tree responses to variation in chill and heat accumulation rates, partial least squares regression was used to correlate first flowering dates of chestnut ( Castanea mollissima Blume) and jujube ( Zizyphus jujube Mill.) in Beijing, China, with daily chill and heat accumulation between 1963 and 2008. The Dynamic Model and the Growing Degree Hour Model were used to convert daily records of minimum and maximum temperature into horticulturally meaningful metrics. Regression analyses identified the chilling and forcing periods for chestnut and jujube. The forcing periods started when half the chilling requirements were fulfilled. Over the past 50 years, heat accumulation during tree dormancy increased significantly, while chill accumulation remained relatively stable for both species. Heat accumulation was the main driver of bloom timing, with effects of variation in chill accumulation negligible in Beijing's cold-winter climate. It does not seem likely that reductions in chill will have a major effect on the studied species in Beijing in the near future. Such problems are much more likely for trees grown in locations that are substantially warmer than their native habitats, such as temperate species in the subtropics and tropics.
Numerical simulation of tropical-temperate troughs over Southern Africa using the CSU RAMS model

CSIR Research Space (South Africa)

Van den Heever, SC

1997-08-01

Full Text Available ) and the wet (1981) late summer case studies has been examined. Model simulations reveal that the tropical-temperate troughs form when an upper westerly wave coincides with an easterly, wave or depression in lower levels. These systems occur preferentially over...
Ecological anachronisms in the recruitment of temperate light-demanding tree species in wooded pastures

NARCIS (Netherlands)

Bakker, ES; Olff, H; Vandenberghe, C; De Maeyer, K; Smit, R; Gleichman, JM; Vera, FWM

1. Light-demanding trees and thorny shrubs in temperate plant communities may reflect adaptations to now-extinct large grazers, such as aurochs and tarpans, rendering these adaptations ecological anachronisms. 2. We explored the ecological functions of plant traits of Quercus robur and Prunus
Sex differences in shotgun proteome analyses for chronic oral intake of cadmium in mice.

Directory of Open Access Journals (Sweden)

Yoshiharu Yamanobe

Full Text Available Environmental diseases related to cadmium exposure primarily develop owing to industrial wastewater pollution and/or contaminated food. In regions with high cadmium exposure in Japan, cadmium accumulation occurs primarily in the kidneys of individuals who are exposed to the metal. In contrast, in the itai-itai disease outbreak that occurred in the Jinzu River basin in Toyama Prefecture in Japan, cadmium primarily accumulated in the liver. On the other hand, high concentration of cadmium caused renal tubular disorder and osteomalacia (multiple bone fracture, probably resulting from the renal tubular dysfunction and additional pathology. In this study, we aimed to establish a mouse model of chronic cadmium intake. We administered cadmium-containing drinking water (32 mg/l to female and male mice ad libitum for 11 weeks. Metal analysis using inductively coupled plasma mass spectrometry revealed that cadmium accumulated in the kidneys (927 x 10 + 185 ng/g in females and 661 x 10 + 101 ng/g in males, liver (397 x 10 + 199 ng/g in females and 238 x 10 + 652 ng/g in males, and thyroid gland (293 + 93.7 ng/g in females and 129 + 72.7 ng/g in males of mice. Female mice showed higher cadmium accumulation in the kidney, liver, and thyroid gland than males did (p = 0.00345, p = 0.00213, and p = 0.0331, respectively. Shotgun proteome analyses after chronic oral administration of cadmium revealed that protein levels of glutathione S-transferase Mu2, Mu4, and Mu7 decreased in the liver, and those of A1 and A2 decreased in the kidneys in both female and male mice.
Variation in carbon storage and its distribution by stand age and forest type in boreal and temperate forests in northeastern China.

Science.gov (United States)

Wei, Yawei; Li, Maihe; Chen, Hua; Lewis, Bernard J; Yu, Dapao; Zhou, Li; Zhou, Wangming; Fang, Xiangmin; Zhao, Wei; Dai, Limin

2013-01-01

The northeastern forest region of China is an important component of total temperate and boreal forests in the northern hemisphere. But how carbon (C) pool size and distribution varies among tree, understory, forest floor and soil components, and across stand ages remains unclear. To address this knowledge gap, we selected three major temperate and two major boreal forest types in northeastern (NE) China. Within both forest zones, we focused on four stand age classes (young, mid-aged, mature and over-mature). Results showed that total C storage was greater in temperate than in boreal forests, and greater in older than in younger stands. Tree biomass C was the main C component, and its contribution to the total forest C storage increased with increasing stand age. It ranged from 27.7% in young to 62.8% in over-mature stands in boreal forests and from 26.5% in young to 72.8% in over-mature stands in temperate forests. Results from both forest zones thus confirm the large biomass C storage capacity of old-growth forests. Tree biomass C was influenced by forest zone, stand age, and forest type. Soil C contribution to total forest C storage ranged from 62.5% in young to 30.1% in over-mature stands in boreal and from 70.1% in young to 26.0% in over-mature in temperate forests. Thus soil C storage is a major C pool in forests of NE China. On the other hand, understory and forest floor C jointly contained less than 13% and forests respectively, and thus play a minor role in total forest C storage in NE China.
Summertime elemental mercury exchange of temperate grasslands on an ecosystem-scale

Directory of Open Access Journals (Sweden)

J. Fritsche

2008-12-01

Full Text Available In order to estimate the air-surface mercury exchange of grasslands in temperate climate regions, fluxes of gaseous elemental mercury (GEM were measured at two sites in Switzerland and one in Austria during summer 2006. Two classic micrometeorological methods (aerodynamic and modified Bowen ratio have been applied to estimate net GEM exchange rates and to determine the response of the GEM flux to changes in environmental conditions (e.g. heavy rain, summer ozone on an ecosystem-scale. Both methods proved to be appropriate to estimate fluxes on time scales of a few hours and longer. Average dry deposition rates up to 4.3 ng m⁻² h⁻¹ and mean deposition velocities up to 0.10 cm s⁻¹ were measured, which indicates that during the active vegetation period temperate grasslands are a small net sink for atmospheric mercury. With increasing ozone concentrations depletion of GEM was observed, but could not be quantified from the flux signal. Night-time deposition fluxes of GEM were measured and seem to be the result of mercury co-deposition with condensing water. Effects of grass cuts could also be observed, but were of minor magnitude.

Effect of double quenching and tempering heat treatment on the microstructure and mechanical properties of a novel 5Cr steel processed by electro-slag casting

International Nuclear Information System (INIS)

Liu, Jian; Yu, Hao; Zhou, Tao; Song, Chenghao; Zhang, Kai

2014-01-01

The effect of double quenching and tempering (DQT) treatment as well as conventional high temperature quenching and tempering (CQT) treatment on the microstructures and mechanical properties of low carbon 5Cr martensitic as cast steel produced by electroslag casting was investigated. The microstructure changes were characterized by optical microscope (OM), scanning electron microscope (SEM), electron back scatter diffraction (EBSD) and transmission electron microscopy (TEM). The characteristics of carbides precipitated during tempering were analyzed on both carbon extraction replica and thin foil samples by TEM. The mechanical performance was evaluated by Vickers hardness test, tensile test, and Charpy V-notch impact test at ambient temperature. The results of microstructure study indicated that DQT treatment led to a finer microstructure than that of CQT. The carbides of the tempered samples were identified as M 7 C 3 . The carbides along the prior austenite grain boundaries nucleated directly while those within the laths should be transformed from cementite which formed at the early tempering stage. Compared with CQT condition, yield strength slightly increased after DQT treatment, and impact toughness improved a lot. The strengthening mechanisms were analyzed and it was found that grain refining and precipitation strengthening were mainly responsible for the increase of strength. The superior toughness of DQT condition was attributed to the finer microstructure resulting in more frequent deflections of the cleavage crack and the smaller size of carbides along the prior austenite boundaries. EBSD analysis showed that both martensitic block and packet of low carbon 5Cr tempered martensitic steel could hinder crack propagation, while the latter was more effective
Effect of double quenching and tempering heat treatment on the microstructure and mechanical properties of a novel 5Cr steel processed by electro-slag casting

Energy Technology Data Exchange (ETDEWEB)

Liu, Jian, E-mail: healygo@163.com; Yu, Hao, E-mail: yuhao@ustb.edu.cn; Zhou, Tao, E-mail: zhoutao130984@163.com; Song, Chenghao, E-mail: songchenghao28@126.com; Zhang, Kai, E-mail: zhangkai8901@126.com

2014-12-01

The effect of double quenching and tempering (DQT) treatment as well as conventional high temperature quenching and tempering (CQT) treatment on the microstructures and mechanical properties of low carbon 5Cr martensitic as cast steel produced by electroslag casting was investigated. The microstructure changes were characterized by optical microscope (OM), scanning electron microscope (SEM), electron back scatter diffraction (EBSD) and transmission electron microscopy (TEM). The characteristics of carbides precipitated during tempering were analyzed on both carbon extraction replica and thin foil samples by TEM. The mechanical performance was evaluated by Vickers hardness test, tensile test, and Charpy V-notch impact test at ambient temperature. The results of microstructure study indicated that DQT treatment led to a finer microstructure than that of CQT. The carbides of the tempered samples were identified as M{sub 7}C{sub 3}. The carbides along the prior austenite grain boundaries nucleated directly while those within the laths should be transformed from cementite which formed at the early tempering stage. Compared with CQT condition, yield strength slightly increased after DQT treatment, and impact toughness improved a lot. The strengthening mechanisms were analyzed and it was found that grain refining and precipitation strengthening were mainly responsible for the increase of strength. The superior toughness of DQT condition was attributed to the finer microstructure resulting in more frequent deflections of the cleavage crack and the smaller size of carbides along the prior austenite boundaries. EBSD analysis showed that both martensitic block and packet of low carbon 5Cr tempered martensitic steel could hinder crack propagation, while the latter was more effective.
Detrital carbon pools in temperate forests: magnitude and potential for landscape-scale assessment

Science.gov (United States)

John Bradford; Peter Weishampel; Marie-Louise Smith; Randall Kolka; Richard A. Birdsey; Scott V. Ollinger; Michael G. Ryan

2009-01-01

Reliably estimating carbon storage and cycling in detrital biomass is an obstacle to carbon accounting. We examined carbon pools and fluxes in three small temperate forest landscapes to assess the magnitude of carbon stored in detrital biomass and determine whether detrital carbon storage is related to stand structural properties (leaf area, aboveground biomass,...
Drivers of temporal changes in temperate forest plant diversity vary across spatial scales

Czech Academy of Sciences Publication Activity Database

Bernhardt-Römermann, M.; Baeten, L.; Craven, D.; De Frenne, P.; Hédl, Radim; Lenoir, J.; Bert, D.; Brunet, J.; Chudomelová, Markéta; Decocq, G.; Dierschke, H.; Dirnböck, T.; Dörfler, I.; Heinken, T.; Hermy, M.; Hommel, P.; Jaroszewicz, B.; Keczynski, A.; Kelly, D. L.; Kirkby, K.J.; Kopecký, Martin; Macek, Martin; Máliš, F.; Mirtl, M.; Mitchell, F. J. G.; Naaf, T.; Newman, M.; Peterken, G.; Petřík, Petr; Schmidt, W.; Standovár, T.; Tóth, Z.; Van Calster, H.; Verstraeten, G.; Vladovič, J.; Vild, Ondřej; Wulf, M.; Verheyen, K.

2015-01-01

Roč. 21, č. 10 (2015), s. 3726-3737 ISSN 1354-1013 R&D Projects: GA MŠk(CZ) EE2.3.20.0267 EU Projects: European Commission(XE) 278065 - LONGWOOD Institutional support: RVO:67985939 Keywords : temperate forest * long-term change * herbaceous layer Subject RIV: EF - Botanics Impact factor: 8.444, year: 2015
Microstructural evolution of a 2.25Cr - 1 Mo steel during austenitization and temper: austenite grain growth, carbide precipitation sequence and effects on mechanical properties

International Nuclear Information System (INIS)

Depinoy, Sylvain

2015-01-01

This work aims at optimizing tensile and toughness properties of a 2.25Cr - 1Mo steel by controlling its microstructure through heat treatments. To this aim, phase transformations during austenitization, quenching and tempering have to be understood. Quantitative microstructural analyses were performed by means of SEM, TEM and XRD to characterize and model metallurgical evolution of the steel at each step of the heat treatment. The evolution of austenite during the austenitization stage, and its influence on the resulting as-quenched microstructure were thoroughly investigated. Austenite grain growth was modelled in order to understand its mechanisms, including the limited growth phenomenon observed at lower temperatures. The effect of austenitization conditions on further decomposition of austenite and on mechanical properties after quenching + tempering was experimentally determined. An optimal austenitization condition was selected and applied to study the tempering stage. Carbide precipitation was studied for various tempering temperatures and amounts of time. M3C carbides precipitate first, followed by M2C and M7C3; M23C6 are the equilibrium carbides. The influence of carbide precipitation on mechanical properties was studied. Tensile properties are closely linked to the tempering conditions in the range investigated, while impact toughness remains stable. (author) [fr
Temporal assemblage turnovers of intertidal foraminiferal communities from tropical (SE Caribbean) and temperate (NE England and SW Spain) regions

Science.gov (United States)

Costelloe, Ashleigh; Wilson, Brent; Horton, Benjamin P.; Hayek, Lee-Ann C.

2018-05-01

This is the first quantitative study of temporal assemblage turnovers of the relationships between intertidal foraminifera. Time series datasets collected from tropical Caroni Swamp and Claxton Bay (Trinidad, SE Caribbean) and temperate Cowpen Marsh (NE England, U.K.) and Bay of Cadiz (SW Spain) were used. The assemblage turnover index (ATI) examined species interrelationships through comparisons of monthly or biweekly species proportional abundances over one or two years. Species contributing to major assemblage turnovers (ATI > x + σ) were identified using the conditioned on-boundary index (CoBI). Foraminiferal species are heterogeneously distributed within the sediment; multiple sample stations at a study location cumulatively represent the foraminiferal metacommunity and clusters represent foraminiferal assemblages. The ATI and CoBI were applied to the proportional abundances of live specimens recorded for the metacommunity and assemblages at each location. At Caroni Swamp and Claxton Bay, major assemblage turnovers were driven by the most abundant species and the majority coincided with seasonal change or the arrival of the seasonal Orinoco plume in the Gulf of Paria. Seasonal turnovers of the foraminiferal metacommunities at temperate Cowpen Marsh and Bay of Cádiz occurred during the summer and winter. Major assemblage turnovers in the upper Cowpen Marsh occurred in the summer, and the lower marsh in the winter. Foraminiferans are useful bioindicators for monitoring the health of coastal environments. Understanding foraminiferal population dynamics will allow cyclical changes to be differentiated from abrupt and persistent changes, which are related to anthropogenic disturbances or long-term climate change. The ATI and CoBI are useful indices for quantitatively exploring relationships of foraminiferal populations over time.
Tempered Lévy walk of charged particles in turbulent magnetic field

International Nuclear Information System (INIS)

Sibatov, R T; Uchaikin, V V; Byzykchi, A N

2017-01-01

Recently, various diffusion regimes of ions and electrons in interplanetary magnetic field have been recognized from the data collected by different spacecrafts. Particularly for protons, superdiffusion and normal diffusion parallel to the mean magnetic field were declared, simulation also predicts transient superdiffusive behavior. We interpret parallel motion in terms of the one-dimensional tempered Lévy walk process and show that this representation is consistent with the experimental and simulated results. (paper)
Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing.

Science.gov (United States)

Keinath, Melissa C; Timoshevskiy, Vladimir A; Timoshevskaya, Nataliya Y; Tsonis, Panagiotis A; Voss, S Randal; Smith, Jeramiah J

2015-11-10

Vertebrates exhibit substantial diversity in genome size, and some of the largest genomes exist in species that uniquely inform diverse areas of basic and biomedical research. For example, the salamander Ambystoma mexicanum (the Mexican axolotl) is a model organism for studies of regeneration, development and genome evolution, yet its genome is ~10× larger than the human genome. As part of a hierarchical approach toward improving genome resources for the species, we generated 600 Gb of shotgun sequence data and developed methods for sequencing individual laser-captured chromosomes. Based on these data, we estimate that the A. mexicanum genome is ~32 Gb. Notably, as much as 19 Gb of the A. mexicanum genome can potentially be considered single copy, which presumably reflects the evolutionary diversification of mobile elements that accumulated during an ancient episode of genome expansion. Chromosome-targeted sequencing permitted the development of assemblies within the constraints of modern computational platforms, allowed us to place 2062 genes on the two smallest A. mexicanum chromosomes and resolves key events in the history of vertebrate genome evolution. Our analyses show that the capture and sequencing of individual chromosomes is likely to provide valuable information for the systematic sequencing, assembly and scaffolding of large genomes.
Nonoperative Management of Multiple Penetrating Cardiac and Colon Wounds from a Shotgun: A Case Report and Literature Review

Directory of Open Access Journals (Sweden)

Paula M. Jaramillo

2018-01-01

Full Text Available Introduction. Surgery for cardiac trauma is considered fatal and for wounds of the colon by associated sepsis is normally considered; however, conservative management of many traumatic lesions of different injured organs has progressed over the years. Presentation of the Case. A 65-year-old male patient presented with multiple shotgun wounds on the left upper limb, thorax, and abdomen. On evaluation, he was hemodynamically stable with normal sinus rhythm and normal blood pressure, no dyspnea, or abdominal pain. Computed tomography (CT scan of the chest shows hematoma around the aorta without injury to the blood vessel wall with an intramyocardial projectile without pericardial effusion. CT scan of the abdomen showed pellets in the transverse colon and descending colon endoluminal without extravasation of contrast medium or intra-abdominal fluid. The patient remains hemodynamically stable, and nonsurgical procedure was established. Discussion. Patients with asymptomatic intramyocardial projectiles can be safely managed without surgery. Nonsurgical management is only possible in asymptomatic patients with trauma of the colon through close surveillance and with very selective patients since standard management is surgery. Conclusion. Nonsurgical management of cardiac trauma, as well as colon penetrating trauma, can be performed in carefully selected patients with proper clinical follow-up, imaging, and laboratory studies.
Relation between century-scale Holocene arid intervals in tropical and temperate zones

Science.gov (United States)

Lamb, H. F.; Gasse, F.; Benkaddour, A.; El Hamouti, N.; van der Kaars, S.; Perkins, W. T.; Pearce, N. J.; Roberts, C. N.

1995-01-01

CLIMATE records from lake sediments in tropical Africa, Central America and west Asia show several century-scale arid intervals during the Holocene1-10. These may have been caused by temporary weakening of the monsoonal circulation associated with reduced northward heat transport by the oceans7 or by feedback processes stimulated by changes in tropical land-surface conditions10. Here we use a lake-sediment record from the montane Mediterranean zone of Morocco to address the question of whether these events were also felt in temperate continental regions. We find evidence of arid intervals of similar duration, periodicity and possibly timing to those in the tropics. But our pollen data show that the forest vegetation was not substantially affected by these events, indicating that precipitation remained adequate during the summer growing season. Thus, the depletion of the groundwater aquifer that imprinted the dry events in the lake record must have resulted from reduced winter precipitation. We suggest that the occurrence of arid events during the summer in the tropics but during the winter at temperate latitudes can be rationalized if they are both associated with cooler sea surface temperatures in the North Atlantic.
Soil quality indicators of a mature alley-cropping agroforestry system in temperate North America

Science.gov (United States)

Although agroforestry practices are believed to improve soil quality, reports on long-term effects of alley cropping on soils within agroforestry in the temperate zone are limited. The objective of this study was to examine effects of management, landscape, and soil depth of an established agrofores...
Evapotranspiration and soil moisture dynamics in a temperate grassland ecosystem in Inner Mongolia China

Science.gov (United States)

L. Hao; Ge Sun; Yongqiang Liu; G. S. Zhou; J. H. Wan; L. B. Zhang; J. L. Niu; Y. H. Sang; J. J He

2015-01-01

Precipitation, evapotranspiration (ET), and soil moisture are the key controls for the productivity and functioning of temperate grassland ecosystems in Inner Mongolia, northern China. Quantifying the soil moisture dynamics and water balances in the grasslands is essential to sustainable grassland management under global climate change. We...
The marine radiocarbon bomb pulse across the temperate North Atlantic: a compilation of Delta

NARCIS (Netherlands)

Scourse, J.D.; Wanamaker jr., A.D.; Weidman, C.; Heinemeier, J.; Reimer, P.J.; Butler, P.G.; Witbaard, R.; Richardson, C.A.

2012-01-01

Marine radiocarbon bomb-pulse time histories of annually resolved archives from temperate regions have been underexploited. We present here series of Delta C-14 excess from known-age annual increments of the long-lived bivalve mollusk Arctica islandica from 4 sites across the coastal North Atlantic
Application of the whole-transcriptome shotgun sequencing approach to the study of Philadelphia-positive acute lymphoblastic leukemia

International Nuclear Information System (INIS)

Iacobucci, I; Ferrarini, A; Sazzini, M; Giacomelli, E; Lonetti, A; Xumerle, L; Ferrari, A; Papayannidis, C; Malerba, G; Luiselli, D; Boattini, A; Garagnani, P; Vitale, A; Soverini, S; Pane, F; Baccarani, M; Delledonne, M; Martinelli, G

2012-01-01

Although the pathogenesis of BCR–ABL1-positive acute lymphoblastic leukemia (ALL) is mainly related to the expression of the BCR–ABL1 fusion transcript, additional cooperating genetic lesions are supposed to be involved in its development and progression. Therefore, in an attempt to investigate the complex landscape of mutations, changes in expression profiles and alternative splicing (AS) events that can be observed in such disease, the leukemia transcriptome of a BCR–ABL1-positive ALL patient at diagnosis and at relapse was sequenced using a whole-transcriptome shotgun sequencing (RNA-Seq) approach. A total of 13.9 and 15.8 million sequence reads was generated from de novo and relapsed samples, respectively, and aligned to the human genome reference sequence. This led to the identification of five validated missense mutations in genes involved in metabolic processes (DPEP1, TMEM46), transport (MVP), cell cycle regulation (ABL1) and catalytic activity (CTSZ), two of which resulted in acquired relapse variants. In all, 6390 and 4671 putative AS events were also detected, as well as expression levels for 18 315 and 18 795 genes, 28% of which were differentially expressed in the two disease phases. These data demonstrate that RNA-Seq is a suitable approach for identifying a wide spectrum of genetic alterations potentially involved in ALL
Environment vs. Plant Ontogeny: Arthropod Herbivory Patterns on European Beech Leaves along the Vertical Gradient of Temperate Forests in Central Germany

Directory of Open Access Journals (Sweden)

Stephanie Stiegel

2018-01-01

Full Text Available Environmental and leaf trait effects on herbivory are supposed to vary among different feeding guilds. Herbivores also show variability in their preferences for plant ontogenetic stages. Along the vertical forest gradient, environmental conditions change, and trees represent juvenile and adult individuals in the understorey and canopy, respectively. This study was conducted in ten forests sites in Central Germany for the enrichment of canopy research in temperate forests. Arthropod herbivory of different feeding traces was surveyed on leaves of Fagus sylvatica Linnaeus (European beech; Fagaceae in three strata. Effects of microclimate, leaf traits, and plant ontogenetic stage were analyzed as determining parameters for herbivory. The highest herbivory was caused by exophagous feeding traces. Herbivore attack levels varied along the vertical forest gradient for most feeding traces with distinct patterns. If differences of herbivory levels were present, they only occurred between juvenile and adult F. sylvatica individuals, but not between the lower and upper canopy. In contrast, differences of microclimate and important leaf traits were present between the lower and upper canopy. In conclusion, the plant ontogenetic stage had a stronger effect on herbivory than microclimate or leaf traits along the vertical forest gradient.
Breeding biology of the Three-striped warbler in Venezuela: A contrast between tropical and temperate parulids

Science.gov (United States)

Cox, W.A.; Martin, T.E.

2009-01-01

We document reproductive life history traits of the Three-striped Warbler (Basileuterus tristriatus) from 146 nests in Venezuela and compare our results to data from the literature for other tropical and temperate parulid species. Mean (?? SE) clutch size was 1.96 ?? 0.03 eggs (n = 96) and fresh egg mass was 2.09 ?? 0.02 g. The incubation period was 15.8 ?? 0.2 days (n = 23) and the nestling period was 10.5 ?? 0.3 days (n = 12). Males did not incubate and rarely provided food for females during incubation. Females had 57 ?? 2% (n = 49) nest attentiveness (% of time on the nest incubating), which caused egg temperature to commonly become cold relative to development. Both adults fed nestlings and feeding rates increased with nestling age. The growth rate constant for nestlings based on mass was K 0.490, which is slower than for north temperate warblers. Predation was the primary source of nest failure and only 22% of nests were successful based on a Mayfield daily predation rate of 0.048 ?? 0.006. Our literature review indicates parulids differ strongly in life histories between temperate and tropical/subtropical sites with species in the tropics having, on average, smaller clutches, longer incubation periods, lower nest attentiveness, longer off-bouts, and longer nestling periods. ?? 2009 by the Wilson Ornithological Society.
Modelling Vulnerability and Range Shifts in Ant Communities Responding to Future Global Warming in Temperate Forests.

Science.gov (United States)

Kwon, Tae-Sung; Li, Fengqing; Kim, Sung-Soo; Chun, Jung Hwa; Park, Young-Seuk

2016-01-01

Global warming is likely leading to species' distributional shifts, resulting in changes in local community compositions and diversity patterns. In this study, we applied species distribution models to evaluate the potential impacts of temperature increase on ant communities in Korean temperate forests, by testing hypotheses that 1) the risk of extinction of forest ant species would increase over time, and 2) the changes in species distribution ranges could drive upward movements of ant communities and further alter patterns of species richness. We sampled ant communities at 335 evenly distributed sites across South Korea and modelled the future distribution range for each species using generalized additive models. To account for spatial autocorrelation, autocovariate regressions were conducted prior to generalized additive models. Among 29 common ant species, 12 species were estimated to shrink their suitable geographic areas, whereas five species would benefit from future global warming. Species richness was highest at low altitudes in the current period, and it was projected to be highest at the mid-altitudes in the 2080s, resulting in an upward movement of 4.9 m yr-1. This altered the altitudinal pattern of species richness from a monotonic-decrease curve (common in temperate regions) to a bell-shaped curve (common in tropical regions). Overall, ant communities in temperate forests are vulnerable to the on-going global warming and their altitudinal movements are similar to other faunal communities.
Incidence of invasive macrophytes on methylmercury budget in temperate lakes: Central role of bacterial periphytic communities

International Nuclear Information System (INIS)

Gentès, Sophie; Monperrus, Mathilde; Legeay, Alexia; Maury-Brachet, Régine; Davail, Stephane; André, Jean-Marc; Guyoneaud, Rémy

2013-01-01

Several studies demonstrated high mercury (Hg) methylation and demethylation in the periphyton associated with floating roots in tropical ecosystems. The importance of aquatic plants on methylmercury production in three temperate ecosystems from south-western France was evaluated through Hg species concentrations, and Hg methylation/demethylation activities by using stable isotopic tracers ( 199 Hg(II), Me 201 Hg). Hg accumulation and high methylation and demethylation yields were detected in plant roots and periphyton, whereas results for sediment and water were low to insignificant. The presence of sulfate reducing prokaryotes was detected in all compartments (T-RFLP based on dsrAB amplified through nested PCR) and their main role in Hg methylation could be demonstrated. In turn, sulfate reduction inhibition did not affect demethylation activities. The estimation of net MeHg budgets in these ecosystems suggested that aquatic rhizosphere is the principal location for methylmercury production and may represent an important source for the contamination of the aquatic food chain. - Highlights: ► Both Hg methylation and demethylation occur in the periphyton of temperate ecosystems. ► Aquatic rhizosphere is the main compartment for net methylmercury production. ► Sulfate reducers are detected in all ecosystem compartments (water, sediment, periphyton). ► Sulfate reducers are responsible for methylmercury production in aquatic roots. - The incidence of periphytic microbial communities on net methylmercury production is highlighted in temperate aquatic ecosystems.
Behavioural disturbances in a temperate fish exposed to sustained high-CO2 levels.

Directory of Open Access Journals (Sweden)

Fredrik Jutfelt

Full Text Available As atmospheric CO2 levels rise, the CO2 concentration in ocean surface waters increases through a process commonly referred to as ocean acidification. Recently, surprising behavioural modifications has been detected in the early life stages of tropical coral reef fish exposed to ocean acidification-relevant CO2 concentrations, but it has been unclear if this effect could occur in temperate waters. Here we show several severe behavioural disturbances, including effects on boldness, exploratory behaviour, lateralisation, and learning in a temperate fish, the three-spined stickleback (Gasterosteus aculeatus. The behavioural effects were consistent throughout the exposure period and increased in effect size with exposure time. We observed the effects on adult sticklebacks, a species known to be tolerant to other environmental stressors. Our findings suggest that behavioural abnormalities that stem from CO2 exposure are not restricted to sensitive tropical species or early life stages and may therefore affect fish on a global scale. The severity of disturbances and the possibility of a serious behavioural problem for fish across the globe is cause for concern.
Rapid Tempering of Martensitic Stainless Steel AISI420: Microstructure, Mechanical and Corrosion Properties

Science.gov (United States)

Abbasi-Khazaei, Bijan; Mollaahmadi, Akbar

2017-04-01

In this research, the effect of rapid tempering on the microstructure, mechanical properties and corrosion resistance of AISI 420 martensitic stainless steel has been investigated. At first, all test specimens were austenitized at 1050 °C for 1 h and tempered at 200 °C for 1 h. Then, the samples were rapidly reheated by a salt bath furnace in a temperature range from 300 to 1050 °C for 2 min and cooled in air. The tensile tests, impact, hardness and electrochemical corrosion were carried out on the reheated samples. Scanning electron microscopy was used to study the microstructure and fracture surface. To investigate carbides, transmission electron microscopy and also scanning electron microscopy were used. X-ray diffraction was used for determination of the retained austenite. The results showed that the minimum properties such as the tensile strength, impact energy, hardness and corrosion resistance were obtained at reheating temperature of 700 °C. Semi-continuous carbides in the grain boundaries were seen in this temperature. Secondary hardening phenomenon was occurred at reheating temperature of 500 °C.

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world's most diverse temperate flora.

Science.gov (United States)

Qiu, Ying-Xiong; Fu, Cheng-Xing; Comes, Hans Peter

2011-04-01

The Sino-Japanese Floristic Region (SJFR) of East Asia harbors the most diverse of the world's temperate flora, and was the most important glacial refuge for its Tertiary representatives ('relics') throughout Quaternary ice-age cycles. A steadily increasing number of phylogeographic studies in the SJFR of mainland China and adjacent areas, including the Qinghai-Tibetan-Plateau (QTP) and Sino-Himalayan region, have documented the population histories of temperate plant species in these regions. Here we review this current literature that challenges the oft-stated view of the SJFR as a glacial sanctuary for temperate plants, instead revealing profound effects of Quaternary changes in climate, topography, and/or sea level on the current genetic structure of such organisms. There are three recurrent phylogeographic scenarios identified by different case studies that broadly agree with longstanding biogeographic or palaeo-ecological hypotheses: (i) postglacial re-colonization of the QTP from (south-)eastern glacial refugia; (ii) population isolation and endemic species formation in Southwest China due to tectonic shifts and river course dynamics; and (iii) long-term isolation and species survival in multiple localized refugia of (warm-)temperate deciduous forest habitats in subtropical (Central/East/South) China. However, in four additional instances, phylogeographic findings seem to conflict with a priori predictions raised by palaeo-data, suggesting instead: (iv) glacial in situ survival of some hardy alpine herbs and forest trees on the QTP platform itself; (v) long-term refugial isolation of (warm-)temperate evergreen taxa in subtropical China; (vi) 'cryptic' glacial survival of (cool-)temperate deciduous forest trees in North China; and (vii) unexpectedly deep (Late Tertiary/early-to-mid Pleistocene) allopatric-vicariant differentiation of disjunct lineages in the East China-Japan-Korea region due to past sea transgressions. We discuss these and other consequences
Performance comparison of dwarf laying hens segregating for the naked neck gene in temperate and subtropical environments

Directory of Open Access Journals (Sweden)

Bordas André

2009-01-01

Full Text Available Abstract This study compares laying performances between two environments of dwarf laying hen lines segregating for the naked neck mutation (NA locus, a selected dwarf line of brown-egg layers and its control line. Layers with one of the three genotypes at the NA locus were produced from 11 sires from the control line and 12 sires from the selected line. Two hatches produced 216 adult hens in Taiwan and 297 hens in France. Genetic parameters for laying traits were estimated in each environment and the ranking of sire breeding values was compared between environments. Laying performance was lower, and mortality was higher in Taiwan than in France. The line by environment interaction was highly significant for body weight at 16 weeks, clutch length and egg number, with or without Box-Cox transformation. The selected line was more sensitive to environmental change but in Taiwan it could maintain a higher egg number than the control line. Estimated heritability values in the selected line were higher in France than in Taiwan, but not for all the traits in the control line. The rank correlations between sire breeding values were low within the selected line and slightly higher in the control line. A few sire families showed a good ranking in both environments, suggesting that some families may adapt better to environmental change.
Effect of heavy tempering on microstructure and yield strength of 28CrMo48VTiB martensitic steel

Science.gov (United States)

Sun, Yu; Gu, Shunjie; Wang, Qian; Wang, Huibin; Wang, Qingfeng; Zhang, Fucheng

2018-02-01

The 28CrMo48VTiB martensitic steel for sulfide stress cracking (SSC) resistance oil country tubular goods (OCTG) of C110 grade was thermally processed through quenching at 890 °C and tempering at 600 °C-720 °C for 30-90 min. The microstructures of all samples were characterized using field emission scanning electron microscopy (FESEM), electron backscattering diffraction (EBSD), transmission electron microscopy (TEM) and x-ray diffractometry (XRD). Also, the tensile properties were measured. The results indicated that the yield strength (YS) decreased as both the tempering temperature and duration increased, due to the coarsening of martensitic packet/block/lath structures, the reduction of dislocation density, as well as the increase of both the volume fraction and average diameter of the precipitates. The martensitic lath width was the key microstructural parameter controlling the YS of this heavily-tempered martensitic steel, whereas the corresponding relationship was in accordance with the Langford-Cohen model. Furthermore, the martensitic structure boundary and the solid solution strengthening were the two most significant factors dominating the YS, in comparison with the dislocation and precipitation strengthening.
Autecology of a symbiont-containing temperate soft coral Capnella gaboensis

Energy Technology Data Exchange (ETDEWEB)

Farrant, P.A.

1985-01-01

Capnella gaboensis Verseveldt is the most abundant and widely distributed octocoral growing in temperate Australian waters. This study of the autecology of C. gaboensis pays specific attention to its reproduction growth, population dynamics nutrition. Several populations of Capnella gaboensis were studied in the Sydney area. Colonies in the field populations were mapped and measured at regular intervals for growth and population data. The species is relatively long-lived, and large colonies are likely to be about 20 years of age. Following damage by predation or other causes, the larger colonies are able to heal rapidly. Reproduction and development of Capnella gaboensis was studied by microscopic examination of colony branches collected at regular intervals from colonies in the mapped populations. C. gaboensis is dioecious. Recruitment into Capnella gaboensis populations is mainly by larval production, rather than by asexual means. Only a very low percentage of larvae survive and settle. The survival of recruits is also low, and mortality declines as the colonies grow larger. Nutrition of Capnella gaboensis was investigated by /sup 14/C fixation and oxygen exchange methods in the laboratory. Although the numbers of zooxanthellae and chlorophyll content of C. gaboensis do not vary seasonally, photosynthesis by the zooxanthellae does. Photosynthesis of C. gaboensis appears to be adapted to the temperate habitat in which the species lives. Photosynthetic products, translocated form the zooxanthellae to the animal tissues, provided an important source of nutrition for C. gaboensis.
Human impact on open temperate woodlands during the middle Holocene in Central Europe

Czech Academy of Sciences Publication Activity Database

Jamrichová, Eva; Hédl, Radim; Kolář, Jan; Tóth, P.; Bobek, Přemysl; Hajnalová, M.; Procházka, J.; Kadlec, Jaroslav; Szabó, Péter

2017-01-01

Roč. 245, OCT 2017 (2017), s. 55-68 ISSN 0034-6667 EU Projects: European Commission(XE) 278065 - LONGWOOD Institutional support: RVO:67985939 ; RVO:67985530 Keywords : temperate oakwoods * Quercus * human impact Subject RIV: EH - Ecology, Behaviour; DE - Earth Magnetism, Geodesy, Geography (GFU-E) OBOR OECD: Ecology; Physical geography (GFU-E) Impact factor: 1.817, year: 2016
Suitability of close-to-nature silviculture for adapting temperate European forests to climate change

NARCIS (Netherlands)

Brang, P.; Spathelf, P.; Larsen, J.B.; Bauhus, J.; Boncina, A.; Mohren, G.M.J.

2014-01-01

In many parts of Europe, close-to-nature silviculture (CNS) has been widely advocated as being the best approach for managing forests to cope with future climate change. In this review, we identify and evaluate six principles for enhancing the adaptive capacity of European temperate forests in a
Grand canonical simulations of hard-disk systems by simulated tempering

DEFF Research Database (Denmark)

Döge, G.; Mecke, K.; Møller, Jesper

2004-01-01

The melting transition of hard disks in two dimensions is still an unsolved problem and improved simulation algorithms may be helpful for its investigation. We suggest the application of simulating tempering for grand canonical hard-disk systems as an efficient alternative to the commonly......-used Monte Carlo algorithms for canonical systems. This approach allows the direct study of the packing fraction as a function of the chemical potential even in the vicinity of the melting transition. Furthermore, estimates of several spatial characteristics including pair correlation function are studied...
Soil respiration and organic carbon dynamics with grassland conversions to woodlands in temperate china.

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Wei Wang

Full Text Available Soils are the largest terrestrial carbon store and soil respiration is the second-largest flux in ecosystem carbon cycling. Across China's temperate region, climatic changes and human activities have frequently caused the transformation of grasslands to woodlands. However, the effect of this transition on soil respiration and soil organic carbon (SOC dynamics remains uncertain in this area. In this study, we measured in situ soil respiration and SOC storage over a two-year period (Jan. 2007-Dec. 2008 from five characteristic vegetation types in a forest-steppe ecotone of temperate China, including grassland (GR, shrubland (SH, as well as in evergreen coniferous (EC, deciduous coniferous (DC and deciduous broadleaved forest (DB, to evaluate the changes of soil respiration and SOC storage with grassland conversions to diverse types of woodlands. Annual soil respiration increased by 3%, 6%, 14%, and 22% after the conversion from GR to EC, SH, DC, and DB, respectively. The variation in soil respiration among different vegetation types could be well explained by SOC and soil total nitrogen content. Despite higher soil respiration in woodlands, SOC storage and residence time increased in the upper 20 cm of soil. Our results suggest that the differences in soil environmental conditions, especially soil substrate availability, influenced the level of annual soil respiration produced by different vegetation types. Moreover, shifts from grassland to woody plant dominance resulted in increased SOC storage. Given the widespread increase in woody plant abundance caused by climate change and large-scale afforestation programs, the soils are expected to accumulate and store increased amounts of organic carbon in temperate areas of China.
Temporal flexibility of reproduction in temperate-breeding dabbling ducks

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Krapu, Gary L.

2000-01-01

I compared nesting intervals during three consecutive years in five species of temperate-nesting dabbling ducks (Mallard [Anas platyrhynchos], Northern Pintail [Anas acuta], Northern Shoveler [Anas clypeata], Blue-winged Teal [Anas discors], Gadwall [Anas strepera]) and assessed whether differences existed in timing of refractoriness. Most nesting by females of all five species ended by the summer solstice. Nesting ended earliest for Northern Shovelers and Northern Pintails and latest for Gadwalls. Some Mallards, Blue-winged Teal, and Gadwalls continued to nest into mid- and late summer, whereas Northern Shovelers and Northern pintails did not. Mallards, Blue-winged Teal, and Gadwalls accounted for 99% (81 of 82) of flightless broods resulting from nests initiated during mid- or late summer in North Dakota and 98% (58 of 59) of flightless juveniles shot on or after 1 October by a random sample of duck hunters from across the United States. Early cessation of breeding by Northern Shovelers may have evolved in response to the species' limited flexibility in diet. Photorefractory mechanisms that limit most breeding to spring presumably evolved in response to severe constraints on reproductive success when nesting continued through summer(e.g. mortality of late-hatched young and molting females due to low temperatures). Interspecific differences in photosensitivity may account for variation in timing of cessation of nesting in late spring, but controlled experiments are needed to assess the possible role of non-photic influences. My results suggest that the refractory mechanisms controlling length of the breeding in temperate-nesting dabbling ducks are more varied and complex than previously thought, with non-photic influences (e.g. water conditions, food availability, food quality) having a larger role than indicated by earlier research.
RNA shotgun metagenomic sequencing of northern California (USA mosquitoes uncovers viruses, bacteria, and fungi

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James Angus eChandler

2015-03-01

Full Text Available Mosquitoes, most often recognized for the microbial agents of disease they may carry, harbor diverse microbial communities that include viruses, bacteria, and fungi, collectively called the microbiota. The composition of the microbiota can directly and indirectly affect disease transmission through microbial interactions that could be revealed by its characterization in natural populations of mosquitoes. Furthermore, the use of shotgun metagenomic sequencing (SMS approaches could allow the discovery of unknown members of the microbiota. In this study, we use RNA SMS to characterize the microbiota of seven individual mosquitoes (species include Culex pipiens, Culiseta incidens, and Ochlerotatus sierrensis collected from a variety of habitats in California, USA. Sequencing was performed on the Illumina HiSeq platform and the resulting sequences were quality-checked and assembled into contigs using the A5 pipeline. Sequences related to single stranded RNA viruses of the Bunyaviridae and Rhabdoviridae were uncovered, along with an unclassified genus of double-stranded RNA viruses. Phylogenetic analysis finds that in all three cases, the closest relatives of the identified viral sequences are other mosquito-associated viruses, suggesting widespread host-group specificity among disparate viral taxa. Interestingly, we identified a Narnavirus of fungi, also reported elsewhere in mosquitoes, that potentially demonstrates a nested host-parasite association between virus, fungi, and mosquito. Sequences related to 8 bacterial families and 13 fungal families were found across the seven samples. Bacillus and Escherichia/Shigella were identified in all samples and Wolbachia was identified in all Cx. pipiens samples, while no single fungal genus was found in more than two samples. This study exemplifies the utility of RNA SMS in the characterization of the natural microbiota of mosquitoes and, in particular, the value of identifying all microbes associated with
Linkages between the life-history evolution of tropical and temperate birds and the resistance of cultured skin fibroblasts to oxidative and non-oxidative chemical injury.

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Jimenez, Ana Gabriela; Harper, James M; Queenborough, Simon A; Williams, Joseph B

2013-04-15

A fundamental challenge facing physiological ecologists is to understand how variation in life history at the whole-organism level might be linked to cellular function. Thus, because tropical birds have higher annual survival and lower rates of metabolism, we hypothesized that cells from tropical species would have greater cellular resistance to chemical injury than cells from temperate species. We cultured dermal fibroblasts from 26 tropical and 26 temperate species of birds and examined cellular resistance to cadmium, H(2)O(2), paraquat, thapsigargin, tunicamycium, methane methylsulfonate (MMS) and UV light. Using ANCOVA, we found that the values for the dose that killed 50% of cells (LD(50)) from tropical birds were significantly higher for H(2)O(2) and MMS. When we tested for significance using a generalized least squares approach accounting for phylogenetic relationships among species to model LD(50), we found that cells from tropical birds had greater tolerance for Cd, H(2)O(2), paraquat, tunicamycin and MMS than cells from temperate birds. In contrast, tropical birds showed either lower or no difference in tolerance to thapsigargin and UV light in comparison with temperate birds. These findings are consistent with the idea that natural selection has uniquely fashioned cells of long-lived tropical bird species to be more resistant to forms of oxidative and non-oxidative stress than cells from shorter-lived temperate species.
Effect of Tempering Temperature and Time on the Corrosion Behaviour of 304 and 316 Austenitic Stainless Steels in Oxalic Acid

OpenAIRE

Ayo S. Afolabi; Johannes H. Potgieter; Ambali S. Abdulkareem; Nonhlanhla Fungura

2011-01-01

The effect of different tempering temperatures and heat treatment times on the corrosion resistance of austenitic stainless steels in oxalic acid was studied in this work using conventional weight loss and electrochemical measurements. Typical 304 and 316 stainless steel samples were tempered at 150oC, 250oC and 350oC after being austenized at 1050oC for 10 minutes. These samples were then immersed in 1.0M oxalic acid and their weight losses were measured at every five days for 30 days. The r...
Influence of climate change on the flowering of temperate fruit trees

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Perez-Lopez, D.; Ruiz-Ramos, M.; Sánchez-Sánchez, E.; Centeno, A.; Prieto-Egido, I.; Lopez-de-la-Franca, N.

2012-04-01

It is well known that winter chilling is necessary for the flowering of temperate trees. The chilling requirement is a criterion for choosing a species or variety at a given location. Also chemistry products can be used for reducing the chilling-hours needs but make our production more expensive. This study first analysed the observed values of chilling hours for some representative agricultural locations in Spain for the last three decades and their projected changes under climate change scenarios. Usually the chilling is measured and calculated as chilling-hours, and different methods have been used to calculate them (e.g. Richarson et al., 1974 among others) according to the species considered. For our objective North Carolina method (Shaltout and Unrath, 1983) was applied for apples, Utah method (Richardson et al. 1974) for peach and grapevine and the approach used by De Melo-Abreu et al. (2004) for olive trees. The influence of climate change in temperate trees was studied by calculating projections of chilling-hours with climate data from Regional Climate Models (RCMs) at high resolution (25 km) from the European Project ENSEMBLES (http://www.ensembles-eu.org/). These projections will allow for analysing the modelled variations of chill-hours between 2nd half of 20C and 1st half of 21C at the study locations.
Seasonal changes of the pelagic fish assemblage in a temperate estuary

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Hagan, S. M.; Able, K. W.

2003-01-01

The pelagic (i.e. fishes that spend most of their time swimming and feeding in the water column) fish assemblage was examined within a temperate estuary to determine the seasonal patterns of abundance, biomass, richness, and species composition. These measures were related to abiotic measures including temperature, salinity, water transparency, and depth. Pelagic fish (nGasterosteus aculeatus and age 1+ by M. menidia. Spring (April-early June) was overwhelmingly dominated by age 0+ C. harengus. Early summer (late June-early July) was relatively species rich and characterized by age 0+ of Brevoortia tyrannus, Pomatomus saltatrix, Alosa pseudoharengus, and age 1+ of A. mitchilli. Late summer (late July-August) remained relatively species rich and included mostly age 0+ of A. mitchilli, A. hepsetus, and M. menidia. Autumn (September-November) continued to have high catches of age 0+ of M. menidia and A. mitchilli. As expected for temperate estuaries, the best of the measured abiotic predictors of these groupings included temperature, salinity, and degree of change in temperature. However, timing of life history characteristics, such as location, and timing of reproduction and migration also influenced the seasonal occurrence of these pelagic species. The large abundance and biomass of a relatively few species, as observed in this study, are typical of estuaries, although this is one of the few studies that have focused solely on the pelagic component of estuarine fish assemblages.
Edge effects enhance carbon uptake and its vulnerability to climate change in temperate broadleaf forests.

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Reinmann, Andrew B; Hutyra, Lucy R

2017-01-03

Forest fragmentation is a ubiquitous, ongoing global phenomenon with profound impacts on the growing conditions of the world's remaining forest. The temperate broadleaf forest makes a large contribution to the global terrestrial carbon sink but is also the most heavily fragmented forest biome in the world. We use field measurements and geospatial analyses to characterize carbon dynamics in temperate broadleaf forest fragments. We show that forest growth and biomass increase by 89 ± 17% and 64 ± 12%, respectively, from the forest interior to edge, but ecosystem edge enhancements are not currently captured by models or approaches to quantifying regional C balance. To the extent that the findings from our research represent the forest of southern New England in the United States, we provide a preliminary estimate that edge growth enhancement could increase estimates of the region's carbon uptake and storage by 13 ± 3% and 10 ± 1%, respectively. However, we also find that forest growth near the edge declines three times faster than that in the interior in response to heat stress during the growing season. Using climate projections, we show that future heat stress could reduce the forest edge growth enhancement by one-third by the end of the century. These findings contrast studies of edge effects in the world's other major forest biomes and indicate that the strength of the temperate broadleaf forest carbon sink and its capacity to mitigate anthropogenic carbon emissions may be stronger, but also more sensitive to climate change than previous estimates suggest.
Streamlined Membrane Proteome Preparation for Shotgun Proteomics Analysis with Triton X-100 Cloud Point Extraction and Nanodiamond Solid Phase Extraction

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Minh D. Pham

2016-05-01

Full Text Available While mass spectrometry (MS plays a key role in proteomics research, characterization of membrane proteins (MP by MS has been a challenging task because of the presence of a host of interfering chemicals in the hydrophobic protein extraction process, and the low protease digestion efficiency. We report a sample preparation protocol, two-phase separation with Triton X-100, induced by NaCl, with coomassie blue added for visualizing the detergent-rich phase, which streamlines MP preparation for SDS-PAGE analysis of intact MP and shot-gun proteomic analyses. MP solubilized in the detergent-rich milieu were then sequentially extracted and fractionated by surface-oxidized nanodiamond (ND at three pHs. The high MP affinity of ND enabled extensive washes for removal of salts, detergents, lipids, and other impurities to ensure uncompromised ensuing purposes, notably enhanced proteolytic digestion and down-stream mass spectrometric (MS analyses. Starting with a typical membranous cellular lysate fraction harvested with centrifugation/ultracentrifugation, MP purities of 70%, based on number (not weight of proteins identified by MS, was achieved; the weight-based purity can be expected to be much higher.
In Situ Investigation of the Evolution of Lattice Strain and Stresses in Austenite and Martensite During Quenching and Tempering of Steel

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Villa, M.; Niessen, F.; Somers, M. A. J.

2018-01-01

Energy dispersive synchrotron X-ray diffraction was applied to investigate in situ the evolution of lattice strains and stresses in austenite and martensite during quenching and tempering of a soft martensitic stainless steel. In one experiment, lattice strains in austenite and martensite were measured in situ in the direction perpendicular to the sample surface during an austenitization, quenching, and tempering cycle. In a second experiment, the sin2 ψ method was applied in situ during the austenite-to-martensite transformation to distinguish between macro- and phase-specific micro-stresses and to follow the evolution of these stresses during transformation. Martensite formation evokes compressive stress in austenite that is balanced by tensile stress in martensite. Tempering to 748 K (475 °C) leads to partial relaxation of these stresses. Additionally, data reveal that (elastic) lattice strain in austenite is not hydrostatic but hkl dependent, which is ascribed to plastic deformation of this phase during martensite formation and is considered responsible for anomalous behavior of the 200 γ reflection.
Temperature dependence of UV radiation effects in Arctic and temperate isolates of three red macrophytes

NARCIS (Netherlands)

van de Poll, W.H.; Eggert, A.; Buma, A.G.J.; Breeman, Arno

The temperature dependence of UV effects was studied for Arctic and temperate isolates of the red macrophytes Palmaria palmata, Coccotylus truncatus and Phycodrys rubens. The effects of daily repeated artificial ultraviolet B and A radiation (UVBR: 280-320 nm, UVAR: 320-400 nm) treatments were
Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer

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Emma L. Doughty

2014-09-01

Full Text Available Tuberculosis remains a major global health problem. Laboratory diagnostic methods that allow effective, early detection of cases are central to management of tuberculosis in the individual patient and in the community. Since the 1880s, laboratory diagnosis of tuberculosis has relied primarily on microscopy and culture. However, microscopy fails to provide species- or lineage-level identification and culture-based workflows for diagnosis of tuberculosis remain complex, expensive, slow, technically demanding and poorly able to handle mixed infections. We therefore explored the potential of shotgun metagenomics, sequencing of DNA from samples without culture or target-specific amplification or capture, to detect and characterise strains from the Mycobacterium tuberculosis complex in smear-positive sputum samples obtained from The Gambia in West Africa. Eight smear- and culture-positive sputum samples were investigated using a differential-lysis protocol followed by a kit-based DNA extraction method, with sequencing performed on a benchtop sequencing instrument, the Illumina MiSeq. The number of sequence reads in each sputum-derived metagenome ranged from 989,442 to 2,818,238. The proportion of reads in each metagenome mapping against the human genome ranged from 20% to 99%. We were able to detect sequences from the M. tuberculosis complex in all eight samples, with coverage of the H37Rv reference genome ranging from 0.002X to 0.7X. By analysing the distribution of large sequence polymorphisms (deletions and the locations of the insertion element IS6110 and single nucleotide polymorphisms (SNPs, we were able to assign seven of eight metagenome-derived genomes to a species and lineage within the M. tuberculosis complex. Two metagenome-derived mycobacterial genomes were assigned to M. africanum, a species largely confined to West Africa; the others that could be assigned belonged to lineages T, H or LAM within the clade of “modern” M. tuberculosis
Soil phosphorus fractionation as a tool for monitoring dust phosphorus signature underneath a Blue Pine (Pinus wallichiana canopy in a Temperate Forest

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Mustafa-Nawaz Shafqat

2016-12-01

Full Text Available Aims of the study: This study aims (i to monitor the amount of dust deposition during dry season in the moist temperate forest; (ii to study nature of P fractions in the dust samples falling on the trees in the region; (iii to study soil P fractions as influenced by the processes of throughfall and stemflow of a Blue Pine (Pinus wallichiana canopy and to finger print the contribution of dust towards P input in the temperate forest ecosystem. Area of study: The site used for the collection of soil samples was situated at an elevation of 6900 feet above sea levels (temperate forest in Himalaya region in the Thandani area national forest located in the north west of Pakistan. Material and methods: For soil sampling and processing, three forest sites with three old tree plants per site were selected at approximately leveled plain for surface soil sampling. Two dust samples were collected and analyzed for different physicochemical properties along with different P fractions. First dust sample was collected from a site situated at an elevation of 4000 feet and second one was collected from an elevation of 6500 feet above sea levels. Modified Hedley procedure for the fractionation of P in the dust and soil samples were used. Main results: The input of dust was 43 and 20 kg ha-1 during drier months of the year (September-June at lower and higher elevation sites respectively, and the dust from lower elevation site had relative more all P fractions than the other dust sample. However, HCl-Pi fraction was dominant in both samples. Both labile (water plus NaHCO3 and non-labile (NaOH plus HCl inorganic P (Pi fractions were significantly increased in the surface soil by both stemflow and throughfall compared to the open field soil. The buildup of NaOH and HCl-Pi pools in soils underneath the canopy might prove useful in fingerprinting the contribution of atmospheric dust towards P cycling in this temperate forest. Research highlights: The role of dust in

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