Measuring canopy structure with an airborne laser altimeter

International Nuclear Information System (INIS)

Ritchie, J.C.; Evans, D.L.; Jacobs, D.; Everitt, J.H.; Weltz, M.A.

1993-01-01

Quantification of vegetation patterns and properties is needed to determine their role on the landscape and to develop management plans to conserve our natural resources. Quantifying vegetation patterns from the ground, or by using aerial photography or satellite imagery is difficult, time consuming, and often expensive. Digital data from an airborne laser altimeter offer an alternative method to quantify selected vegetation properties and patterns of forest and range vegetation. Airborne laser data found canopy heights varied from 2 to 6 m within even-aged pine forests. Maximum canopy heights measured with the laser altimeter were significantly correlated to measurements made with ground-based methods. Canopy shape could be used to distinguish deciduous and evergreen trees. In rangeland areas, vegetation heights, spatial patterns, and canopy cover measured with the laser altimeter were significantly related with field measurements. These studies demonstrate the potential of airborne laser data to measure canopy structure and properties for large areas quickly and quantitatively

Ingestive behavior of supplemented Nellore heifers grazing palisadegrass pastures managed with different sward heights.

Science.gov (United States)

Vieira, Bruno Ramalho; Azenha, Mariana Vieira; Casagrande, Daniel Rume; Costa, Diogo Fleury Azevedo; Ruggieri, Ana Cláudia; Berchielli, Telma Teresinha; Reis, Ricardo Andrade

2017-04-01

Three sward heights (15, 25 and 35 cm) and three supplement types (energy, energy-protein, and a mineral mix supplement) were evaluated in a 3 × 3 factorial arrangement distributed in a completely randomized design to study changes in forage search patterns in Nellore heifers in a continuous grazing system. Pasture data were collected using two replicates (paddocks) per treatment over four periods during the rainy season. The behavior assessments were made in the first and fourth grazing seasons. It was hypothesized that supplements and pasture management would modify ingestive behavior, considering that animals would require less time grazing if they had energy requirements met through higher digestibility of better managed paddocks, or use of supplements high in energy. Total and green forage masses along with green : dead material ratio were greater in treatments managed with higher sward heights. Sward managed with 35 cm height resulted in lower leaf : stem ratio compared with 15 cm sward height treatments. The animals on the 15 cm pastures spent more time grazing overall and during each meal, but there were no differences observed in meal numbers in comparison to 35 cm treatments. Heifers fed protein and/or energy supplements spent less time grazing in the early afternoon, but overall grazing time was the same for all animals. © 2016 Japanese Society of Animal Science.

Coupling Fine-Scale Root and Canopy Structure Using Ground-Based Remote Sensing

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Brady S. Hardiman

2017-02-01

Full Text Available Ecosystem physical structure, defined by the quantity and spatial distribution of biomass, influences a range of ecosystem functions. Remote sensing tools permit the non-destructive characterization of canopy and root features, potentially providing opportunities to link above- and belowground structure at fine spatial resolution in functionally meaningful ways. To test this possibility, we employed ground-based portable canopy LiDAR (PCL and ground penetrating radar (GPR along co-located transects in forested sites spanning multiple stages of ecosystem development and, consequently, of structural complexity. We examined canopy and root structural data for coherence (i.e., correlation in the frequency of spatial variation at multiple spatial scales ≤10 m within each site using wavelet analysis. Forest sites varied substantially in vertical canopy and root structure, with leaf area index and root mass more becoming even vertically as forests aged. In all sites, above- and belowground structure, characterized as mean maximum canopy height and root mass, exhibited significant coherence at a scale of 3.5–4 m, and results suggest that the scale of coherence may increase with stand age. Our findings demonstrate that canopy and root structure are linked at characteristic spatial scales, which provides the basis to optimize scales of observation. Our study highlights the potential, and limitations, for fusing LiDAR and radar technologies to quantitatively couple above- and belowground ecosystem structure.

Tiller size/population density compensation in grazed Coastcross bermudagrass swards

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Sbrissia André Fischer

2001-01-01

Full Text Available Several compensatory mechanisms in pastures do not allow optimisation of responses from the processes of herbage production and utilisation. Compensation due to tiller size/density relationships is one of these mechanisms. This experiment evaluated this process for Coastcross bermudagrass and compared the responses to those reported for temperate forages. Treatments were "steady state" sward surface heights of 5, 10, 15, and 20 cm that were maintained from August, 1998, through July, 1999 by sheep grazing. The experimental design was a randomised complete block, replicated four times. Pasture responses were evaluated on four separate dates (15/12/1998, 25/01/1999, 07/04/1999 and 04/07/1999 with respect to: tiller population density, tiller weight, leaf mass and leaf area per tiller and herbage mass (biomass. Tiller volume, leaf area index (LAI, tiller leaf:stem ratio and tiller leaf area:volume ratio (R were calculated. Simple regression analyses between tiller population density and tiller weight were also performed. Coastcross swards showed a tiller size/density compensation mechanism where high tiller population densities were associated with small tillers and vice-versa; except on the last evaluation. However, regression analysis revealed linear coefficients of -3.83 to -2.05, which are lower than the theoretical expectation of -3/2. The lower R values observed, when compared to those reported for perennial ryegrass, suggest that Coastcross swards optimised their LAI via clonal integration among tillers in contrast with tillers of cool-season grasses that respond more as individuals. However, this hypothesis has yet to be experimentally verified.

The Impact of Tourist Traffic on the Condition and Cell Structures of Alpine Swards

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Marlena Kycko

2018-02-01

Full Text Available This research focuses on the effect of trampling on vegetation in high-mountain ecosystems through the electromagnetic spectrum’s interaction with plant pigments, cell structure, water content and other substances that have a direct impact on leaf properties. The aim of the study was to confirm with the use of fluorescence methods of variability in the state of high-mountain vegetation previously measured spectrometrically. The most heavily visited part of the High Tatras in Poland was divided into polygons and, after selecting the dominant species within alpine swards, a detailed analysis of trampled and reference patterns was performed. The Analytical Spectral Devices (ASD FieldSpec 3/4 were used to acquire high-resolution spectral properties of plants, their fluorescence and the leaf chlorophyll content with the difference between the plant surface temperature (ts, and the air temperature (ta as well as fraction of Absorbed Photosynthetically Active Radiation (fAPAR used as reference data. The results show that, along tourist trails, vegetation adapts to trampling with the impact depending on the species. A lower chlorophyll value was confirmed by a decrease in fluorescence, and the cellular structures were degraded in trampled compared to reference species, with a lower leaf reflectance. In addition, at the extreme, trampling can eliminate certain species such as Luzula alpino-pilosa, for which significant changes were noted due to trampling.

A note on the effects of paddock size on the white clover content of swards grazed by sheep

NARCIS (Netherlands)

Wolf, de P.L.; Schulte, R.P.O.; Lantinga, E.A.

2004-01-01

The maintenance of a high white clover content in mixed swards under sheep grazing has been a challenge to date. This paper presents the results of an experiment in which the effect of the length of a grazing period on the botanical composition of a mixed sward was studied. Paddocks ranging in size

Landscape-scale changes in forest canopy structure across a partially logged tropical peat swamp

Science.gov (United States)

Wedeux, B. M. M.; Coomes, D. A.

2015-11-01

Forest canopy structure is strongly influenced by environmental factors and disturbance, and in turn influences key ecosystem processes including productivity, evapotranspiration and habitat availability. In tropical forests increasingly modified by human activities, the interplay between environmental factors and disturbance legacies on forest canopy structure across landscapes is practically unexplored. We used airborne laser scanning (ALS) data to measure the canopy of old-growth and selectively logged peat swamp forest across a peat dome in Central Kalimantan, Indonesia, and quantified how canopy structure metrics varied with peat depth and under logging. Several million canopy gaps in different height cross-sections of the canopy were measured in 100 plots of 1 km2 spanning the peat dome, allowing us to describe canopy structure with seven metrics. Old-growth forest became shorter and had simpler vertical canopy profiles on deeper peat, consistent with previous work linking deep peat to stunted tree growth. Gap size frequency distributions (GSFDs) indicated fewer and smaller canopy gaps on the deeper peat (i.e. the scaling exponent of Pareto functions increased from 1.76 to 3.76 with peat depth). Areas subjected to concessionary logging until 2000, and illegal logging since then, had the same canopy top height as old-growth forest, indicating the persistence of some large trees, but mean canopy height was significantly reduced. With logging, the total area of canopy gaps increased and the GSFD scaling exponent was reduced. Logging effects were most evident on the deepest peat, where nutrient depletion and waterlogged conditions restrain tree growth and recovery. A tight relationship exists between canopy structure and peat depth gradient within the old-growth tropical peat swamp forest. This relationship breaks down after selective logging, with canopy structural recovery, as observed by ALS, modulated by environmental conditions. These findings improve our

Examining conifer canopy structural complexity across forest ages and elevations with LiDAR data

Science.gov (United States)

Van R. Kane; Jonathan D. Bakker; Robert J. McGaughey; James A. Lutz; Rolf F. Gersonde; Jerry F. Franklin

2010-01-01

LiDAR measurements of canopy structure can be used to classify forest stands into structural stages to study spatial patterns of canopy structure, identify habitat, or plan management actions. A key assumption in this process is that differences in canopy structure based on forest age and elevation are consistent with predictions from models of stand development. Three...

Microclimate, canopy structure and photosynthesis in canopies of three contrasting temperate forage grasses. III. Canopy photosynthesis, individual leaf photosynthesis and the distribution of current assimilate

Energy Technology Data Exchange (ETDEWEB)

Sheehy, J E

1977-01-01

The rates of canopy and individual leaf photosynthesis and /sup 14/C distribution for three temperate forage grasses Lolium perenne cv. S24, L. perenne cv. Reveille and Festuca arundinacea cv. S170 were determined in the field during a summer growth period. Canopy photosynthesis declined as the growth period progressed, reflecting a decline in the photosynthetic capacity of successive youngest fully expanded leaves. The decline in the maximum photosynthetic capacity of the canopies was correlated with a decline in their quantum efficiencies at low irradiance. Changes in canopy structure resulted in changes in canopy net photosynthesis and dark respiration. No clear relationships between changes in the environment and changes in canopy net photosynthesis and dark respiration were established. The relative distributions of /sup 14/C in the shoots of the varieties gave a good indication of the amount of dry matter per ground area in the varieties. 21 references, 4 figures, 1 table.

The seasonal growth patterns of a Tall Grassveld sward | NFG ...

African Journals Online (AJOL)

The growth patterns of a Tall Grassveld sward measured with an inclined point and by clipping and weighing were determined by moisture conditions except in winter when temperature was limiting. The inclined point as a method of determining yield which might replace clipping and weighing, holds promise but is unlikely ...

Forest canopy water fluxes can be estimated using canopy structure metrics derived from airborne light detection and ranging (LiDAR)

DEFF Research Database (Denmark)

Schumacher, Johannes; Christiansen, Jesper Riis

2015-01-01

Forests contribute to improve water quality, affect drinking water resources, and therefore influence water supply on a regional level. The forest canopy structure affects the retention of precipitation (Pr) in the canopy and hence the amount of water transferred to the forest floor termed canopy...... impacts water resources on a large scale in regions where forests play a major role in water resource management....

Quantifying Ancient Maya Land Use Legacy Effects on Contemporary Rainforest Canopy Structure

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Jessica N. Hightower

2014-11-01

Full Text Available Human land use legacies have significant and long-lasting ecological impacts across landscapes. Investigating ancient (>400 years legacy effects can be problematic due to the difficulty in detecting specific, historic land uses, especially those hidden beneath dense canopies. Caracol, the largest (~200 km2 Maya archaeological site in Belize, was abandoned ca. A.D. 900, leaving behind myriad structures, causeways, and an extensive network of agricultural terraces that persist beneath the architecturally complex tropical forest canopy. Airborne LiDAR enables the detection of these below-canopy archaeological features while simultaneously providing a detailed record of the aboveground 3-dimensional canopy organization, which is indicative of a forest’s ecological function. Here, this remote sensing technology is used to determine the effects of ancient land use legacies on contemporary forest structure. Canopy morphology was assessed by extracting LiDAR point clouds (0.25 ha plots from LiDAR-identified terraced (n = 150 and non-terraced (n = 150 areas on low (0°–10°, medium (10°–20°, and high (>20° slopes. We calculated the average canopy height, canopy openness, and vertical diversity from the LiDAR returns, with topographic features (i.e., slope, elevation, and aspect as covariates. Using a PerMANOVA procedure, we determined that forests growing on agricultural terraces exhibited significantly different canopy structure from those growing on non-terraced land. Terraces appear to mediate the effect of slope, resulting in less structural variation between slope and non-sloped land and yielding taller, more closed, more vertically diverse forests. These human land uses abandoned >1000 years ago continue to impact contemporary tropical rainforests having implications related to arboreal habitat and carbon storage.

Imaging spectroscopy for early detection of nitrogen deficiency in grass swards

NARCIS (Netherlands)

Schut, A.G.T.; Ketelaars, J.J.M.H.

2003-01-01

The potential of an experimental imaging spectroscopy system with high spatial (0.16–0.28 mm²) ) and spectral resolution (5–13 nm) was explored for early detection of nitrogen (N) stress. From June through October 2000, a greenhouse experiment was conducted with 15 Lolium perenne L. mini-swards and

Waveform- and Terrestrial Lidar Assessment of the Usual (Structural) Suspects in a Forest Canopy

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van Aardt, J. A.; Romanczyk, P.; Kelbe, D.; van Leeuwen, M.; Cawse-Nicholson, K.; Gough, C. M.; Kampe, T. U.

2015-12-01

Forest inventory has evolved from standard stem diameter-height relationships, to coarse canopy metrics, to more involved ecologically-meaningful variables, such as leaf area index (LAI) and even canopy radiative transfer as a function of canopy gaps, leaf clumping, and leaf angle distributions. Accurate and precise measurement of the latter set of variables presents a challenge to the ecological and modeling communities; however, relatively novel remote sensing modalities, e.g., waveform lidar (wlidar) and terrestrial lidar systems (TLS), have the potential to adress this challenge. Research teams at Rochester Institute of Technology (RIT) and the Virginia Commonwealth University (VCU) have been collaborating with the National Ecological Observation Network (NEON) to assess vegetation canopy structure and variation at the University of Michigan Biological Research Station and the NEON Northeast domain (Harvard Forest, MA). Airborne small-footprint wlidar data, in-situ TLS data, and first-principles, physics-based simulation tools are being used to study (i) the impact of vegetation canopy geometric elements on wlidar signals (twigs and petioles have been deemed negligible), (ii) the analysis of airborne wlidar data for top-down assessment of canopy metrics such as LAI, and (iii) our ability to extract "bottom-up" canopy structure from TLS using scans registered to each other using a novel marker-free registration approach (e.g., basal area: R2=0.82, RMSE=7.43 m2/ha). Such studies indicate that we can potentially assess radiative transfer through vegetation canopies remotely using a vertically-stratified approach with wlidar, and augment such an approach via rapid-scan TLS technology to gain a better understanding of fine-scale variation in canopy structure. This in turn is key to quantifying and modeling radiative transfer based on understanding of forest canopy structural change as a function of ecosystem development, climate, and anthropogenic drivers.

Canopy rainfall partitioning across an urbanization gradient in forest structure as characterized by terrestrial LiDAR

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Mesta, D. C.; Van Stan, J. T., II; Yankine, S. A.; Cote, J. F.; Jarvis, M. T.; Hildebrandt, A.; Friesen, J.; Maldonado, G.

2017-12-01

As urbanization expands, greater forest area is shifting from natural stand structures to urban stand structures, like forest fragments and landscaped tree rows. Changes in forest canopy structure have been found to drastically alter the amount of rainwater reaching the surface. However, stormwater management models generally treat all forest structures (beyond needle versus broadleaved) similarly. This study examines the rainfall partitioning of Pinus spp. canopies along a natural-to-urban forest gradient and compares these to canopy structural measurements using terrestrial LiDAR. Throughfall and meteorological observations were also used to estimate parameters of the commonly-used Gash interception model. Preliminary findings indicate that as forest structure changed from natural, closed canopy conditions to semi-closed canopy fragments and, ultimately, to exposed urban landscaping tree rows, the interchange between throughfall and rainfall interception also changed. This shift in partitioning between throughfall and rainfall interception may be linked to intuitive parameters, like canopy closure and density, as well as more complex metrics, like the fine-scale patterning of gaps (ie, lacunarity). Thus, results indicate that not all forests of the same species should be treated the same by stormwater models. Rather, their canopy structural characteristics should be used to vary their hydrometeorological interactions.

Forest biomass, canopy structure, and species composition relationships with multipolarization L-band synthetic aperture radar data

Science.gov (United States)

Sader, Steven A.

1987-01-01

The effect of forest biomass, canopy structure, and species composition on L-band synthetic aperature radar data at 44 southern Mississippi bottomland hardwood and pine-hardwood forest sites was investigated. Cross-polarization mean digital values for pine forests were significantly correlated with green weight biomass and stand structure. Multiple linear regression with five forest structure variables provided a better integrated measure of canopy roughness and produced highly significant correlation coefficients for hardwood forests using HV/VV ratio only. Differences in biomass levels and canopy structure, including branching patterns and vertical canopy stratification, were important sources of volume scatter affecting multipolarization radar data. Standardized correction techniques and calibration of aircraft data, in addition to development of canopy models, are recommended for future investigations of forest biomass and structure using synthetic aperture radar.

Nitrogen fertilization of grass/clover swards under cutting or grazing by dairy cows

DEFF Research Database (Denmark)

Søegaard, Karen

2009-01-01

farms over a period of three years. Nitrogen was applied at four rates (0, 75, 150, and 225 kg N year-1) with cutting or grazing regime in Year 1 and Year 2, after establishment. A spring-only application of 150 kg N was compared with four applications during the season, which was the fertilization...... affected. The results indicate different possibilities for strategic fertilization both at farm and field level, and in swards with a high clover content it demonstrates how the clover content can be used as a buffer both for maximizing the N-response and for manipulating the production profile.......Intensively managed perennial ryegrass/white clover (Lolium perenne L. and Trifolium repens L.) swards receive relatively high levels of fertilizer N, and high N surpluses can subsequently be found. The N-fertilization effects on growth, yield, and herbage quality were therefore examined on three...

The combined effect of fertiliser nitrogen and phosphorus on herbage yield and change in soil nutrients of a grass/clover and grass-only sward

NARCIS (Netherlands)

Schils, R.L.M.; Snijders, P.J.M.

2004-01-01

The combined effect of reduced nitrogen ( N ) and phosphorus ( P ) application on the production of grass- only and grass/ clover swards was studied in a five- year cutting experiment on a marine clay soil, established on newly sown swards. Furthermore, changes in soil N, P and carbon ( C ) were

Measurement of emission and deposition patterns of ammonia from urine in grass swards

Science.gov (United States)

Ross, C. A.; Jarvis, S. C.

Currently, legislation is being considered to reduce NH3 emissions in the UK. The major sources of NH3 and their relative contributions are well known, however, the processes that control the rates of emission are still poorly defined. A series of wind-tunnel experiments has been carried out to determine the effects of various management practices on NH3 losses. The tunnels were modified to enable NH3 emission and subsequent deposition to the adjacent swards in the field to be measured. The wind-tunnels were used to examine the effects of herbage length, cutting and N status on rates of NH3 fluxes, which together with the prevailing environmental conditions affected the rates of NH3 emission and deposition. Results showed that between 20 and 60% of the NH3 emitted was deposited within 2 m. Compensation points of between 1.0 and 2.3 μg m-3 were calculated for the grass sward.

Investigation into the role of canopy structure traits and plant functional types in modulating the correlation between canopy nitrogen and reflectance in a temperate forest in northeast China

Science.gov (United States)

Yu, Quanzhou; Wang, Shaoqiang; Zhou, Lei

2017-10-01

A precise estimate of canopy leaf nitrogen concentration (CNC, based on dry mass) is important for researching the carbon assimilation capability of forest ecosystems. Hyperspectral remote sensing technology has been applied to estimate regional CNC, which can adjust forest photosynthetic capacity and carbon uptake. However, the relationship between forest CNC and canopy spectral reflectance as well as its mechanism is still poorly understood. Using measured CNC, canopy structure and species composition data, four vegetation indices (VIs), and near-infrared reflectance (NIR) derived from EO-1 Hyperion imagery, we investigated the role of canopy structure traits and plant functional types (PFTs) in modulating the correlation between CNC and canopy reflectance in a temperate forest in northeast China. A plot-scale forest structure indicator, named broad foliar dominance index (BFDI), was introduced to provide forest canopy structure and coniferous and broadleaf species composition. Then, we revealed the response of forest canopy reflectance spectrum to BFDI and CNC. Our results showed that leaf area index had no significant effect on NIR (P>0.05) but indicated that there was a significant correlation (R2=0.76, P0.05). On the contrary, removing the CNC effect, the partial correlation between BFDI and NIR was positively significant (R=0.69, Pforest types. Nevertheless, the relationship cannot be considered as a feasible approach of CNC estimation for a single PFT.

Effects of structural complexity on within-canopy light environments and leaf traits in a northern mixed deciduous forest.

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Fotis, Alexander T; Curtis, Peter S

2017-10-01

Canopy structure influences forest productivity through its effects on the distribution of radiation and the light-induced changes in leaf physiological traits. Due to the difficulty of accessing and measuring forest canopies, few field-based studies have quantitatively linked these divergent scales of canopy functioning. The objective of our study was to investigate how canopy structure affects light profiles within a forest canopy and whether leaves of mature trees adjust morphologically and biochemically to the light environments characteristic of canopies with different structural complexity. We used a combination of light detection and ranging (LiDAR) data and hemispherical photographs to quantify canopy structure and light environments, respectively, and a telescoping pole to sample leaves. Leaf mass per area (LMA), nitrogen on an area basis (Narea) and chlorophyll on a mass basis (Chlmass) were measured in red maple (Acer rubrum), american beech (Fagus grandifolia), white pine (Pinus strobus), and northern red oak (Quercus rubra) at different heights in plots with similar leaf area index but contrasting canopy complexity (rugosity). We found that more complex canopies had greater porosity and reduced light variability in the midcanopy while total light interception was unchanged relative to less complex canopies. Leaf phenotypes of F. grandifolia, Q. rubra and P. strobus were more sun-acclimated in the midstory of structurally complex canopies while leaf phenotypes of A. rubrum were more shade-acclimated (lower LMA) in the upper canopy of more complex stands, despite no differences in total light interception. Broadleaf species showed further differences in acclimation with increased Narea and reduced Chlmass in leaves with higher LMA, while P. strobus showed no change in Narea and Chlmass with higher LMA. Our results provide new insight on how light distribution and leaf acclimation in mature trees might be altered when natural and anthropogenic

Spatial Structure of Soil Macrofauna Diversity and Tree Canopy in Riparian Forest of Maroon River

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Ehsan Sayad

2017-02-01

with a mean temperature of 24.5oc. Plant cover, mainly comprises Populus euphratica Olivie and Tamarix arceuthoides Bge and Lycium shawii Roemer & Schultes. Soil macrofauna were sampled using 175 sampling point along parallel transects (perpendicular to the river. The distance between transects was 100m. We considered distance between samples as 50 m. tree canopy were measured in 5* 5 plots. soil macrofauna were extracted from 50 cm×50 cm×10 cm soil monolith by hand-sorting procedure. All soil macrofauna were identified to family level. Evenness (Sheldon index, richness (Menhinich index and diversity (Shannon H’ index by using PAST version 1.39, were determined in each sample. Classical statistical parameters, i.e. mean, standard deviation, coefficient of variation, minimum and maximum, were calculated using SPSS17 software. For analysis of the relationship between Soil macrofauna diversity indices and tree canopy (Total canopy, Populous canopy, Tamarix canopy and Serim canopy we calculated the correlation among soil properties and macrofauna using the Pearson correlation coefficient. Next, to determining the spatial structure, we calculated the semivariances. Semivariance quantifies the spatial dependence of spatially ordered variable values. In order to gather information about the spatial connection between any two variables, and to compare the similarity of their spatial structure patterns, cross-variograms were constructed. Cross-variograms are plots of cross-semivariance against the lag distance. Results and Discussion: Soil macrofauna communities were dominated by earthworm, diplopods, coleoptera, gastropoda, araneae, and insect larvae. Correlation analysis of soil macrofauna and tree canopy indicated weak relationships between them. Weak, but significant relationships were found between macrofauna diversity, evenness, richness and total canopy, Populous canopy and Tamarix canopy (positive. Macrofauna indices and tree canopy(excepted Tamarix canopy were

Optimizing Radiometric Processing and Feature Extraction of Drone Based Hyperspectral Frame Format Imagery for Estimation of Yield Quantity and Quality of a Grass Sward

Science.gov (United States)

Näsi, R.; Viljanen, N.; Oliveira, R.; Kaivosoja, J.; Niemeläinen, O.; Hakala, T.; Markelin, L.; Nezami, S.; Suomalainen, J.; Honkavaara, E.

2018-04-01

Light-weight 2D format hyperspectral imagers operable from unmanned aerial vehicles (UAV) have become common in various remote sensing tasks in recent years. Using these technologies, the area of interest is covered by multiple overlapping hypercubes, in other words multiview hyperspectral photogrammetric imagery, and each object point appears in many, even tens of individual hypercubes. The common practice is to calculate hyperspectral orthomosaics utilizing only the most nadir areas of the images. However, the redundancy of the data gives potential for much more versatile and thorough feature extraction. We investigated various options of extracting spectral features in the grass sward quantity evaluation task. In addition to the various sets of spectral features, we used photogrammetry-based ultra-high density point clouds to extract features describing the canopy 3D structure. Machine learning technique based on the Random Forest algorithm was used to estimate the fresh biomass. Results showed high accuracies for all investigated features sets. The estimation results using multiview data provided approximately 10 % better results than the most nadir orthophotos. The utilization of the photogrammetric 3D features improved estimation accuracy by approximately 40 % compared to approaches where only spectral features were applied. The best estimation RMSE of 239 kg/ha (6.0 %) was obtained with multiview anisotropy corrected data set and the 3D features.

Competition and facilitation structure plant communities under nurse tree canopies in extremely stressful environments.

Science.gov (United States)

Al-Namazi, Ali A; El-Bana, Magdy I; Bonser, Stephen P

2017-04-01

Nurse plant facilitation in stressful environments can produce an environment with relatively low stress under its canopy. These nurse plants may produce the conditions promoting intense competition between coexisting species under the canopy, and canopies may establish stress gradients, where stress increases toward the edge of the canopy. Competition and facilitation on these stress gradients may control species distributions in the communities under canopies. We tested the following predictions: (1) interactions between understory species shift from competition to facilitation in habitats experiencing increasing stress from the center to the edge of canopy of a nurse plant, and (2) species distributions in understory communities are controlled by competitive interactions at the center of canopy, and facilitation at the edge of the canopy. We tested these predictions using a neighbor removal experiment under nurse trees growing in arid environments. Established individuals of each of four of the most common herbaceous species in the understory were used in the experiment. Two species were more frequent in the center of the canopy, and two species were more frequent at the edge of the canopy. Established individuals of each species were subjected to neighbor removal or control treatments in both canopy center and edge habitats. We found a shift from competitive to facilitative interactions from the center to the edge of the canopy. The shift in the effect of neighbors on the target species can help to explain species distributions in these canopies. Canopy-dominant species only perform well in the presence of neighbors in the edge microhabitat. Competition from canopy-dominant species can also limit the performance of edge-dominant species in the canopy microhabitat. The shift from competition to facilitation under nurse plant canopies can structure the understory communities in extremely stressful environments.

Canopy structural alterations to nitrogen functions of the soil microbial community in a Quercus virginiana forest

Science.gov (United States)

Moore, L. D.; Van Stan, J. T., II; Rosier, C. L.; Gay, T. E.; Wu, T.

2014-12-01

Forest canopy structure controls the timing, amount and chemical character of precipitation supply to soils through interception and drainage along crown surfaces. Yet, few studies have examined forest canopy structural connections to soil microbial communities (SMCs), and none have measured how this affects SMC N functions. The maritime Quercus virginiana Mill. (southern live oak) forests of St Catherine's Island, GA, USA provide an ideal opportunity to examine canopy structural alterations to SMCs and their functioning, as their throughfall varies substantially across space due to dense Tillandsia usneoides L. (spanish moss) mats bestrewn throughout. To examine the impact of throughfall variability on SMC N functions, we examined points along the canopy coverage continuum: large canopy gaps (0%), bare canopy (50-60%), and canopy of heavy T. usneoides coverage (>=85%). Five sites beneath each of the canopy cover types were monitored for throughfall water/ions and soil leachates chemistry for one storm each month over the growing period (7 months, Mar-2014 to Sep-2014) to compare with soil chemistry and SMC communities sampled every two months throughout that same period (Mar, May, Jul, Sep). DGGE and QPCR analysis of the N functioning genes (NFGs) to characterize the ammonia oxidizing bacterial (AOB-amoA), archaea (AOA-amoA), and ammonification (chiA) communities were used to determine the nitrification and decomposition potential of these microbial communities. PRS™-probes (Western Ag Innovations Inc., Saskatoon, Canada) were then used to determine the availability of NO3-N and NH4+N in the soils over a 6-week period to evaluate whether the differing NFG abundance and community structures resulted in altered N cycling.

Spectroscopic Remote Sensing of Non-Structural Carbohydrates in Forest Canopies

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Gregory P. Asner

2015-03-01

Full Text Available Non-structural carbohydrates (NSC are products of photosynthesis, and leaf NSC concentration may be a prognostic indicator of climate-change tolerance in woody plants. However, measurement of leaf NSC is prohibitively labor intensive, especially in tropical forests, where foliage is difficult to access and where NSC concentrations vary enormously by species and across environments. Imaging spectroscopy may allow quantitative mapping of leaf NSC, but this possibility remains unproven. We tested the accuracy of NSC remote sensing at leaf, canopy and stand levels using visible-to-shortwave infrared (VSWIR spectroscopy with partial least squares regression (PLSR techniques. Leaf-level analyses demonstrated the high precision (R2 = 0.69–0.73 and accuracy (%RMSE = 13%–14% of NSC estimates in 6136 live samples taken from 4222 forest canopy species worldwide. The leaf spectral data were combined with a radiative transfer model to simulate the role of canopy structural variability, which led to a reduction in the precision and accuracy of leaf NSC estimation (R2 = 0.56; %RMSE = 16%. Application of the approach to 79 one-hectare plots in Amazonia using the Carnegie Airborne Observatory VSWIR spectrometer indicated the good precision and accuracy of leaf NSC estimates at the forest stand level (R2 = 0.49; %RMSE = 9.1%. Spectral analyses indicated strong contributions of the shortwave-IR (1300–2500 nm region to leaf NSC determination at all scales. We conclude that leaf NSC can be remotely sensed, opening doors to monitoring forest canopy physiological responses to environmental stress and climate change.

Portable and Airborne Small Footprint LiDAR: Forest Canopy Structure Estimation of Fire Managed Plots

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Claudia M.C.S. Listopad

2011-06-01

Full Text Available This study used an affordable ground-based portable LiDAR system to provide an understanding of the structural differences between old-growth and secondary-growth Southeastern pine. It provided insight into the strengths and weaknesses in the structural determination of portable systems in contrast to airborne LiDAR systems. Portable LiDAR height profiles and derived metrics and indices (e.g., canopy cover, canopy height were compared among plots with different fire frequency and fire season treatments within secondary forest and old growth plots. The treatments consisted of transitional season fire with four different return intervals: 1-yr, 2-yr, 3-yr fire return intervals, and fire suppressed plots. The remaining secondary plots were treated using a 2-yr late dormant season fire cycle. The old growth plots were treated using a 2-yr growing season fire cycle. Airborne and portable LiDAR derived canopy cover were consistent throughout the plots, with significantly higher canopy cover values found in 3-yr and fire suppressed plots. Portable LiDAR height profile and metrics presented a higher sensitivity in capturing subcanopy elements than the airborne system, particularly in dense canopy plots. The 3-dimensional structures of the secondary plots with varying fire return intervals were dramatically different to old-growth plots, where a symmetrical distribution with clear recruitment was visible. Portable LiDAR, even though limited to finer spatial scales and specific biases, is a low-cost investment with clear value for the management of forest canopy structure.

A specific PFT and sub-canopy structure for simulating oil palm in the Community Land Model

Science.gov (United States)

Fan, Y.; Knohl, A.; Roupsard, O.; Bernoux, M.; LE Maire, G.; Panferov, O.; Kotowska, M.; Meijide, A.

2015-12-01

Towards an effort to quantify the effects of rainforests to oil palm conversion on land-atmosphere carbon, water and energy fluxes, a specific plant functional type (PFT) and sub-canopy structure are developed for simulating oil palm within the Community Land Model (CLM4.5). Current global land surface models only simulate annual crops beside natural vegetation. In this study, a multilayer oil palm subroutine is developed in CLM4.5 for simulating oil palm's phenology and carbon and nitrogen allocation. The oil palm has monopodial morphology and sequential phenology of around 40 stacked phytomers, each carrying a large leaf and a fruit bunch, forming a natural multilayer canopy. A sub-canopy phenological and physiological parameterization is thus introduced, so that multiple phytomer components develop simultaneously but according to their different phenological steps (growth, yield and senescence) at different canopy layers. This specific multilayer structure was proved useful for simulating canopy development in terms of leaf area index (LAI) and fruit yield in terms of carbon and nitrogen outputs in Jambi, Sumatra (Fan et al. 2015). The study supports that species-specific traits, such as palm's monopodial morphology and sequential phenology, are necessary representations in terrestrial biosphere models in order to accurately simulate vegetation dynamics and feedbacks to climate. Further, oil palm's multilayer structure allows adding all canopy-level calculations of radiation, photosynthesis, stomatal conductance and respiration, beside phenology, also to the sub-canopy level, so as to eliminate scale mismatch problem among different processes. A series of adaptations are made to the CLM model. Initial results show that the adapted multilayer radiative transfer scheme and the explicit represention of oil palm's canopy structure improve on simulating photosynthesis-light response curve. The explicit photosynthesis and dynamic leaf nitrogen calculations per canopy

Quantifying seasonal dynamics of canopy structure and function using inexpensive narrowband spectral radiometers

Science.gov (United States)

Vierling, L. A.; Garrity, S. R.; Campbell, G.; Coops, N. C.; Eitel, J.; Gamon, J. A.; Hilker, T.; Krofcheck, D. J.; Litvak, M. E.; Naupari, J. A.; Richardson, A. D.; Sonnentag, O.; van Leeuwen, M.

2011-12-01

Increasing the spatial and temporal density of automated environmental sensing networks is necessary to quantify shifts in plant structure (e.g., leaf area index) and function (e.g., photosynthesis). Improving detection sensitivity can facilitate a mechanistic understanding by better linking plant processes to environmental change. Spectral radiometer measurements can be highly useful for tracking plant structure and function from diurnal to seasonal time scales and calibrating and validating satellite- and aircraft-based spectral measurements. However, dense ground networks of such instruments are challenging to establish due to the cost and complexity of automated instrument deployment. We therefore developed simple to operate, lightweight and inexpensive narrowband (~10nm bandwidth) spectral instruments capable of continuously measuring four to six discrete bands that have proven capacity to describe key physiological processes and structural features of plant canopies. These bands are centered at 530, 570, 675, 800, 880, and 970 nm to enable calculation of the physiological reflectance index (PRI), normalized difference vegetation index (NDVI), green NDVI (gNDVI), and water band index (WBI) collected above and within vegetation canopies. To date, measurements have been collected above grassland, semi-arid shrub steppe, piñon-juniper woodland, dense conifer forest, mixed deciduous-conifer forest, and cropland canopies, with additional measurements collected along vertical transects through a temperate conifer rainforest. Findings from this work indicate not only that key shifts in plant phenology, physiology, and structure can be captured using such instruments, but that the temporally dense nature of the measurements can help to disentangle heretofore unreported complexities of simultaneous phenological and structural change on canopy reflectance.

Polyphenolic composition and antioxidant capacity of legume based swards are affected by light intensity in a Mediterranean agroforestry system.

Science.gov (United States)

Re, Giovanni Antonio; Piluzza, Giovanna; Sanna, Federico; Molinu, Maria Giovanna; Sulas, Leonardo

2018-06-01

In Mediterranean grazed woodlands, microclimate changes induced by trees influence the growth and development of the understory, but very little is known about its polyphenolic composition in relation to light intensity. We investigated the bioactive compounds and antioxidant capacity of different legume-based swards and variations due to full sunlight and partial shade. The research was carried out in a cork oak agrosilvopastoral system in Sardinia. The highest values of DPPH reached 7 mmol TEAC 100 g -1 DW, total phenolics 67.1 g GAE kg -1 DW and total flavonoids 7.5 g CE kg -1 DW. Compared to full sunlight, partial shade reduced DPPH values by 29 and 42%, and the total phenolic content by 23 and 53% in 100% legume mixture and semi natural pasture. Twelve phenolic compounds were detected: chlorogenic acid in 80% legume mixture (partial shade) and verbascoside in pure sward of bladder clover (full sunlight) were the most abundant. Light intensity significantly affected antioxidant capacity, composition and levels of phenolic compounds. Our results provide new insights into the effects of light intensity on plant secondary metabolites from legume based swards, underlining the important functions provided by agroforestry systems. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

ASSESSING THE CANOPY INTEGRITY USING CANOPY DIGITAL IMAGES IN SEMIDECIDUOUS FOREST FRAGMENT IN SÃO CARLOS - SP- BRAZIL1

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Thiago Yamada

2017-11-01

Full Text Available ABSTRACT It is well-known that conducting experimental research aiming the characterization of canopy structure of forests can be a difficult and costly task and, generally, requires an expert to extract, in loco, relevant information. Aiming at easing studies related to canopy structures, several techniques have been proposed in the literature and, among them, various are based on canopy digital image analysis. The research work described in this paper empirically compares two techniques that measure the integrity of the canopy structure of a forest fragment; one of them is based on central parts of canopy cover images and, the other, on canopy closure images. For the experiments, 22 central parts of canopy cover images and 22 canopy closure images were used. The images were captured along two transects: T1 (located in the conserved area and T2 (located in the naturally disturbance area. The canopy digital images were computationally processed and analyzed using the MATLAB platform for the canopy cover images and the Gap Light Analyzer (GLA, for the canopy closure images. The results obtained using these two techniques showed that canopy cover images and, among the employed algorithms, the Jseg, characterize the canopy integrity best. It is worth mentioning that part of the analysis can be automatically conducted, as a quick and precise process, with low material costs involved.

Effects of chicory/perennial ryegrass swards compared with perennial ryegrass swards on the performance and carcass quality of grazing beef steers.

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Christina L Marley

Full Text Available An experiment investigated whether the inclusion of chicory (Cichorium intybus in swards grazed by beef steers altered their performance, carcass characteristics or parasitism when compared to steers grazing perennial ryegrass (Lolium perenne. Triplicate 2-ha plots were established with a chicory/ryegrass mix or ryegrass control. Forty-eight Belgian Blue-cross steers were used in the first grazing season and a core group (n = 36 were retained for finishing in the second grazing season. The experiment comprised of a standardisation and measurement period. During standardisation, steers grazed a ryegrass/white clover pasture as one group. Animals were allocated to treatment on the basis of liveweight, body condition and faecal egg counts (FEC determined 7 days prior to the measurement period. The measurement period ran from 25 May until 28 September 2010 and 12 April until 11 October 2011 in the first and second grazing year. Steers were weighed every 14 days at pasture or 28 days during housing. In the first grazing year, faecal samples were collected for FEC and parasite cultures. At the end of the first grazing year, individual blood samples were taken to determine O. ostertagi antibody and plasma pepsinogen levels. During winter, animals were housed as one group and fed silage. In the second grazing year, steers were slaughtered when deemed to reach fat class 3. Data on steer performance showed no differences in daily live-weight gain which averaged 1.04 kg/day. The conformation, fat grade and killing out proportion of beef steers grazing chicory/ryegrass or ryegrass were not found to differ. No differences in FEC, O. ostertagi antibody or plasma pepsinogen levels of beef steers grazing either chicory/ryegrass or ryegrass were observed. Overall, there were no detrimental effects of including chicory in swards grazed by beef cattle on their performance, carcass characteristics or helminth parasitism, when compared with steers grazing ryegrass.

Dairy cow excreta patches change the boreal grass swards from sink to source of methane

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Marja Elisa Maljanen

2012-06-01

Full Text Available We studied methane (CH4 flux rates from experimental excreta patches on a dairy pasture with a chamber technique during snow free seasons and with a gas gradient technique during winter from timothy-meadow fescue sward with mineral N fertilization (220 kg ha-1 and from grass-white clover mixture without fertilization. The dung and urine patches were applied in June or August two consecutive grazing seasons and the measurements were carried out for a year following each application. There were no significant differences in CH4 fluxes between plant species and emissions originated mainly from the fresh dung pats. The average annual CH4 fluxes from the control sites without excreta were -0.60±0.1 and with the excreta 0.47±0.3 kg CH4 ha-1. Thus, excreta originating from dairy cows can turn boreal swards from weak sinks to small sources of CH4. However, these emissions are only 0.2% of the total CH4 emissions from a dairy cow.

Estimating Canopy Structure in an Amazon Forest from Laser Range Finder and IKONOS Satellite Observations

Science.gov (United States)

Gregory P. Asner; Michael Palace; Michael Keller; Rodrigo Pereira Jr.; Jose N. M. Silva; Johan C. Zweede

2002-01-01

Canopy structural data can be used for biomass estimation and studies of carbon cycling, disturbance, energy balance, and hydrological processes in tropical forest ecosystems. Scarce information on canopy dimensions reflects the difficulties associated with measuring crown height, width, depth, and area in tall, humid tropical forests. New field and spaceborne...

LiDAR-derived Vegetation Canopy Structure, Great Smoky Mountains National Park, 2011

Data.gov (United States)

National Aeronautics and Space Administration — This dataset provides multiple-return LiDAR-derived vegetation canopy structure at 30-meter spatial resolution for the Great Smoky Mountains National Park (GSMNP)....

Exploring canopy structure and function as a potential mechanism of sustain carbon sequestration in aging forests

Science.gov (United States)

Fotis, A. T.; Curtis, P.; Ricart, R.

2013-12-01

The notion that old-growth forests reach carbon neutrality has recently been challenged, but the mechanisms responsible for continued productivity have remained elusive. Increases in canopy structural complexity, defined by high horizontal and vertical variability in leaf distribution (rugosity), has been proposed as a mechanism for sustained high rates of above ground net primary production (ANPPw) in forests up to ~170 years by enhancing light use efficiency (LUE) and nitrogen use efficiency (NUE). However, a detailed understanding of how rugosity affects resource distribution within and among trees leading to greater LUE and NUE is not known. We propose that leaves in high rugosity plots receive greater photosynthetic photon flux density (PPFD) than leaves in low rugosity plots, causing shifts from shade- to sun- adapted leaves into deeper portions of the canopy, which is thought to increase the photosynthetic capacity of individuals and lead to higher carbon assimilation in forests. The goal of this research was to: 1) quantify different canopy structural characteristics using a portable canopy LiDAR (PCL) and; 2) assess how these structural characteristics affect resource distribution and subsequent changes in leaf morphological, physiological and biochemical traits in three broadleaf species (e.g., Acer rubrum, Quercus rubra and Fagus grandifolia) and one conifer species (e.g., Pinus strobus) at different levels in the canopy in plots with similar leaf are index (LAI) but highly contrasting rugosity levels. We found that gap fraction had a strong positive correlation with rugosity. High rugosity plots had a bimodal distribution of LAI that was concentrated at the top and bottom of the canopy with an open midstory (between 10-50% of total canopy height) whereas low rugosity plots had a more even distribution of leaves. Leaf mass per area (LMA) of all broadleaved species had a strong positive correlation with cumulative gap fraction (P. strobus had a relatively

Polarimetric, Two-Color, Photon-Counting Laser Altimeter Measurements of Forest Canopy Structure

Science.gov (United States)

Harding, David J.; Dabney, Philip W.; Valett, Susan

2011-01-01

Laser altimeter measurements of forest stands with distinct structures and compositions have been acquired at 532 nm (green) and 1064 nm (near-infrared) wavelengths and parallel and perpendicular polarization states using the Slope Imaging Multi-polarization Photon Counting Lidar (SIMPL). The micropulse, single photon ranging measurement approach employed by SIMPL provides canopy structure measurements with high vertical and spatial resolution. Using a height distribution analysis method adapted from conventional, 1064 nm, full-waveform lidar remote sensing, the sensitivity of two parameters commonly used for above-ground biomass estimation are compared as a function of wavelength. The results for the height of median energy (HOME) and canopy cover are for the most part very similar, indicating biomass estimations using lidars operating at green and near-infrared wavelengths will yield comparable estimates. The expected detection of increasing depolarization with depth into the canopies due to volume multiple-scattering was not observed, possibly due to the small laser footprint and the small detector field of view used in the SIMPL instrument. The results of this work provide pathfinder information for NASA's ICESat-2 mission that will employ a 532 nm, micropulse, photon counting laser altimeter.

Impact of 3D Canopy Structure on Remote Sensing Vegetation Index and Solar Induced Chlorophyll Fluorescence

Science.gov (United States)

Zeng, Y.; Berry, J. A.; Jing, L.; Qinhuo, L.

2017-12-01

Terrestrial ecosystem plays a critical role in removing CO2 from atmosphere by photosynthesis. Remote sensing provides a possible way to monitor the Gross Primary Production (GPP) at the global scale. Vegetation Indices (VI), e.g., NDVI and NIRv, and Solar Induced Fluorescence (SIF) have been widely used as a proxy for GPP, while the impact of 3D canopy structure on VI and SIF has not be comprehensively studied yet. In this research, firstly, a unified radiative transfer model for visible/near-infrared reflectance and solar induced chlorophyll fluorescence has been developed based on recollision probability and directional escape probability. Then, the impact of view angles, solar angles, weather conditions, leaf area index, and multi-layer leaf angle distribution (LAD) on VI and SIF has been studied. Results suggest that canopy structure plays a critical role in distorting pixel-scale remote sensing signal from leaf-scale scattering. In thin canopy, LAD affects both of the remote sensing estimated GPP and real GPP, while in dense canopy, SIF variations are mainly due to canopy structure, instead of just due to physiology. At the microscale, leaf angle reflects the plant strategy to light on the photosynthesis efficiency, and at the macroscale, a priori knowledge of leaf angle distribution for specific species can improve the global GPP estimation by remote sensing.

Momentum and scalar transport within a vegetation canopy following atmospheric stability and seasonal canopy changes: the CHATS experiment

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S. Dupont

2012-07-01

Full Text Available Momentum and scalar (heat and water vapor transfer between a walnut canopy and the overlying atmosphere are investigated for two seasonal periods (before and after leaf-out, and for five thermal stability regimes (free and forced convection, near-neutral condition, transition to stable, and stable. Quadrant and octant analyses of momentum and scalar fluxes followed by space-time autocorrelations of observations from the Canopy Horizontal Array Turbulence Study's (CHATS thirty meter tower help characterize the motions exchanging momentum, heat, and moisture between the canopy layers and aloft.

During sufficiently windy conditions, i.e. in forced convection, near-neutral and transition to stable regimes, momentum and scalars are generally transported by sweep and ejection motions associated with the well-known canopy-top "shear-driven" coherent eddy structures. During extreme stability conditions (both unstable and stable, the role of these "shear-driven" structures in transporting scalars decreases, inducing notable dissimilarity between momentum and scalar transport.

In unstable conditions, "shear-driven" coherent structures are progressively replaced by "buo-yantly-driven" structures, known as thermal plumes; which appear very efficient at transporting scalars, especially upward thermal plumes above the canopy. Within the canopy, downward thermal plumes become more efficient at transporting scalars than upward thermal plumes if scalar sources are located in the upper canopy. We explain these features by suggesting that: (i downward plumes within the canopy correspond to large downward plumes coming from above, and (ii upward plumes within the canopy are local small plumes induced by canopy heat sources where passive scalars are first injected if there sources are at the same location as heat sources. Above the canopy, these small upward thermal plumes aggregate to form larger scale upward thermal plumes. Furthermore, scalar

Seagrass canopy photosynthetic response is a function of canopy density and light environment: a model for Amphibolis griffithii.

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Hedley, John D; McMahon, Kathryn; Fearns, Peter

2014-01-01

A three-dimensional computer model of canopies of the seagrass Amphibolis griffithii was used to investigate the consequences of variations in canopy structure and benthic light environment on leaf-level photosynthetic saturation state. The model was constructed using empirical data of plant morphometrics from a previously conducted shading experiment and validated well to in-situ data on light attenuation in canopies of different densities. Using published values of the leaf-level saturating irradiance for photosynthesis, results show that the interaction of canopy density and canopy-scale photosynthetic response is complex and non-linear, due to the combination of self-shading and the non-linearity of photosynthesis versus irradiance (P-I) curves near saturating irradiance. Therefore studies of light limitation in seagrasses should consider variation in canopy structure and density. Based on empirical work, we propose a number of possible measures for canopy scale photosynthetic response that can be plotted to yield isoclines in the space of canopy density and light environment. These plots can be used to interpret the significance of canopy changes induced as a response to decreases in the benthic light environment: in some cases canopy thinning can lead to an equivalent leaf level light environment, in others physiological changes may also be required but these alone may be inadequate for canopy survival. By providing insight to these processes the methods developed here could be a valuable management tool for seagrass conservation during dredging or other coastal developments.

Seagrass canopy photosynthetic response is a function of canopy density and light environment: a model for Amphibolis griffithii.

Directory of Open Access Journals (Sweden)

John D Hedley

Full Text Available A three-dimensional computer model of canopies of the seagrass Amphibolis griffithii was used to investigate the consequences of variations in canopy structure and benthic light environment on leaf-level photosynthetic saturation state. The model was constructed using empirical data of plant morphometrics from a previously conducted shading experiment and validated well to in-situ data on light attenuation in canopies of different densities. Using published values of the leaf-level saturating irradiance for photosynthesis, results show that the interaction of canopy density and canopy-scale photosynthetic response is complex and non-linear, due to the combination of self-shading and the non-linearity of photosynthesis versus irradiance (P-I curves near saturating irradiance. Therefore studies of light limitation in seagrasses should consider variation in canopy structure and density. Based on empirical work, we propose a number of possible measures for canopy scale photosynthetic response that can be plotted to yield isoclines in the space of canopy density and light environment. These plots can be used to interpret the significance of canopy changes induced as a response to decreases in the benthic light environment: in some cases canopy thinning can lead to an equivalent leaf level light environment, in others physiological changes may also be required but these alone may be inadequate for canopy survival. By providing insight to these processes the methods developed here could be a valuable management tool for seagrass conservation during dredging or other coastal developments.

Phylogenetic Structure of Tree Species across Different Life Stages from Seedlings to Canopy Trees in a Subtropical Evergreen Broad-Leaved Forest.

Science.gov (United States)

Jin, Yi; Qian, Hong; Yu, Mingjian

2015-01-01

Investigating patterns of phylogenetic structure across different life stages of tree species in forests is crucial to understanding forest community assembly, and investigating forest gap influence on the phylogenetic structure of forest regeneration is necessary for understanding forest community assembly. Here, we examine the phylogenetic structure of tree species across life stages from seedlings to canopy trees, as well as forest gap influence on the phylogenetic structure of forest regeneration in a forest of the subtropical region in China. We investigate changes in phylogenetic relatedness (measured as NRI) of tree species from seedlings, saplings, treelets to canopy trees; we compare the phylogenetic turnover (measured as βNRI) between canopy trees and seedlings in forest understory with that between canopy trees and seedlings in forest gaps. We found that phylogenetic relatedness generally increases from seedlings through saplings and treelets up to canopy trees, and that phylogenetic relatedness does not differ between seedlings in forest understory and those in forest gaps, but phylogenetic turnover between canopy trees and seedlings in forest understory is lower than that between canopy trees and seedlings in forest gaps. We conclude that tree species tend to be more closely related from seedling to canopy layers, and that forest gaps alter the seedling phylogenetic turnover of the studied forest. It is likely that the increasing trend of phylogenetic clustering as tree stem size increases observed in this subtropical forest is primarily driven by abiotic filtering processes, which select a set of closely related evergreen broad-leaved tree species whose regeneration has adapted to the closed canopy environments of the subtropical forest developed under the regional monsoon climate.

THE FERTILIZATION EFFECT OF PERMANENT MEADOWS WITH SPENT MUSHROM SUBSTRATE ON THE UPTAKING OF MANGANESE, COPPER AND ZINC BY THE MEADOW SWARD

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Beata Wiśniewska-Kadżajan

2013-04-01

Full Text Available The study was conducted in the years 1999–2001 in a meadow with the following fertilizer combinations: control object (without fertilizer, NPK mineral fertilization, fertilizing with manure, manure with NPK fertilization, fertilizing with spent mushroom substrate; spent mushroom substrate with NPK fertilization. The aim of the study was to determine the effect of permanent grassland fertilization both with spent mushroom substrate and the one supplemented with NPK on the uptaking of manganese, copper and zinc by the meadow sward. After the cultivation of mushrooms, in comparison to the standard manure, the substrate used in the experiment was characterized by more than twice higher amount of manganese and zinc. However, the amount of copper in the organic materials was similar. In spite of having supplied lager amount of manganese, zinc and similar amount of copper to the mushrooms substrate, it caused the reduction of the uptake of the elements in the meadow sward. In spite of supplying larger amounts of manganese, zinc and copper the reduction of their uptaking by meadow sward was observed in comparison to manure mushroom substrate. This may be connected with a slightly alkaline reaction of the soil environment, thus limiting the uptake of the studied micronutrients.

Validating spatial structure in canopy water content using geostatistics

Science.gov (United States)

Sanderson, E. W.; Zhang, M. H.; Ustin, S. L.; Rejmankova, E.; Haxo, R. S.

1995-01-01

Heterogeneity in ecological phenomena are scale dependent and affect the hierarchical structure of image data. AVIRIS pixels average reflectance produced by complex absorption and scattering interactions between biogeochemical composition, canopy architecture, view and illumination angles, species distributions, and plant cover as well as other factors. These scales affect validation of pixel reflectance, typically performed by relating pixel spectra to ground measurements acquired at scales of 1m(exp 2) or less (e.g., field spectra, foilage and soil samples, etc.). As image analysis becomes more sophisticated, such as those for detection of canopy chemistry, better validation becomes a critical problem. This paper presents a methodology for bridging between point measurements and pixels using geostatistics. Geostatistics have been extensively used in geological or hydrogeolocial studies but have received little application in ecological studies. The key criteria for kriging estimation is that the phenomena varies in space and that an underlying controlling process produces spatial correlation between the measured data points. Ecological variation meets this requirement because communities vary along environmental gradients like soil moisture, nutrient availability, or topography.

Patterns of covariance between forest stand and canopy structure in the Pacific Northwest.

Science.gov (United States)

Michael A. Lefsky; Andrew T. Hudak; Warren B. Cohen; S.A. Acker

2005-01-01

In the past decade, LIDAR (light detection and ranging) has emerged as a powerful tool for remotely sensing forest canopy and stand structure, including the estimation of aboveground biomass and carbon storage. Numerous papers have documented the use of LIDAR measurements to predict important aspects of forest stand structure, including aboveground biomass. Other...

Marsh canopy structure changes and the Deepwater Horizon oil spill

Science.gov (United States)

Ramsey, Elijah W.; Rangoonwala, Amina; Jones, Cathleen E.

2016-01-01

Marsh canopy structure was mapped yearly from 2009 to 2012 in the Barataria Bay, Louisiana coastal region that was impacted by the 2010 Deepwater Horizon (DWH) oil spill. Based on the previously demonstrated capability of NASA's UAVSAR polarimetric synthetic aperture radar (PolSAR) image data to map Spartina alterniflora marsh canopy structure, structure maps combining the leaf area index (LAI) and leaf angle distribution (LAD, orientation) were constructed for yearly intervals that were directly relatable to the 2010 LAI-LAD classification. The yearly LAI-LAD and LAI difference maps were used to investigate causes for the previously revealed dramatic change in marsh structure from prespill (2009) to postspill (2010, spill cessation), and the occurrence of structure features that exhibited abnormal spatial and temporal patterns. Water level and salinity records showed that freshwater releases used to keep the oil offshore did not cause the rapid growth from 2009 to 2010 in marsh surrounding the inner Bay. Photointerpretation of optical image data determined that interior marsh patches exhibiting rapid change were caused by burns and burn recovery, and that the pattern of 2010 to 2011 LAI decreases in backshore marsh and extending along some tidal channels into the interior marsh were not associated with burns. Instead, the majority of 2010 to 2011 shoreline features aligned with vectors displaying the severity of 2010 shoreline oiling from the DWH spill. Although the association is not conclusive of a causal oil impact, the coexistent pattern is a significant discovery. PolSAR marsh structure mapping provided a unique perspective of marsh biophysical status that enhanced detection of change and monitoring of trends important to management effectiveness.

Decoupling Contributions from Canopy Structure and Leaf Optics is Critical for Remote Sensing Leaf Biochemistry (Reply to Townsend, et al.)

Science.gov (United States)

Knyazikhin, Yuri; Lewis, Philip; Disney, Mathias I.; Stenberg, Pauline; Mottus, Matti; Rautianinen, Miina; Kaufmann, Robert K.; Marshak, Alexander; Schull, Mitchell A.; Carmona, Pedro Latorre;

Canopy Version 7.0: Canopy manual

International Nuclear Information System (INIS)

Fischler, M.; Uchima, M.; Hockney, G.; Mackenzie, P.

1993-12-01

Canopy provides a machine-independent environment for attacking grid-oriented problems. This document describes the concepts and routines common to all Canopy implementations, independent of the system and implementation. Information specific to the massively parallel ACPMAPS/indexACPMAPS system at FermiLab is contained in two other documents: The CANOPY ACPMAPS USER's GUIDE provides user-oriented instructions on compiling, running, file system usage, and production job control. The CANOPY ACPMAPS SYSTEM MANUAL describes system tools and installation and system management techniques. System-specific User's Guides may be created for implementations on other systems. The goal of Canopy is to allow scientists to use massively parallel systems for a broad class of applications without having to become expert in any particular system or in parallel programming techniques. The Canopy approach identifies grid-oriented concepts and implements them as routines in a library. Applications written in terms of these concepts will run on any system which supports the Canopy software. A side benefit in dealing with familiar concepts is that programs can more easily be understood by other researchers

Summary of a Workshop on Plant Canopy Structure, 27-30 April 1981, Oak Ridge, Tennessee.

Science.gov (United States)

1982-08-01

relating canopy structure to amounts of water-conducting tissue have mostly been tried for woody trees and shrubs in which sapwood area is used as...Forest Service. 20 pp. Grier, C. C. and R. H. Waring. 1974. Conifer foliage mass related to sapwood area . Forest Sci. 20:205-206. Hallg, F., R. A. A...Plant Canopy Struc- ture was held at Oak Ridge, Tenn. Over 30 individuals representing a broad range of disciplines and specific areas of expertise were

Lidar observed seasonal variation of vertical canopy structure in the Amazon evergreen forests

Science.gov (United States)

Tang, H.; Dubayah, R.

2017-12-01

Both light and water are important environmental factors governing tree growth. Responses of tropical forests to their changes are complicated and can vary substantially across different spatial and temporal scales. Of particular interest is the dry-season greening-up of Amazon forests, a phenomenon undergoing considerable debates whether it is real or a "light illusion" caused by artifacts of passive optical remote sensing techniques. Here we analyze seasonal dynamic patterns of vertical canopy structure in the Amazon forests using lidar observations from NASA's Ice, Cloud, and and land Elevation Satellite (ICESat). We found that the net greening of canopy layer coincides with the wet-to-dry transition period, and its net browning occurs mostly at the late dry season. The understory also shows a seasonal cycle, but with an opposite variation to canopy and minimal correlation to seasonal variations in rainfall or radiation. Our results further suggest a potential interaction between canopy layers in the light regime that can optimize the growth of Amazon forests during the dry season. This light regime variability that exists in both spatial and temporal domains can better reveal the dry-season greening-up phenomenon, which appears less obvious when treating the Amazon forests as a whole.

Modeling directional thermal radiance from a forest canopy

International Nuclear Information System (INIS)

McGuire, M.J.; Balick, L.K.; Smith, J.A.; Hutchison, B.A.

1989-01-01

Recent advances in remote sensing technology have increased interest in utilizing the thermal-infared region to gain additional information about surface features such as vegetation canopies. Studies have shown that sensor view angle, canopy structure, and percentage of canopy coverage can affect the response of a thermal sensor. These studies have been primarily of agricultural regions and there have been relatively few examples describing the thermal characteristics of forested regions. This paper describes an extension of an existing thermal vegetation canopy radiance model which has been modified to partially account for the geometrically rough structure of a forest canopy. Fourier series expansion of a canopy height profile is used to calculate improved view factors which partially account for the directional variations in canopy thermal radiance transfers. The original and updated radiance model predictions are compared with experimental data obtained over a deciduous (oak-hickory) forest site. The experimental observations are also used to document azimuthal and nadir directional radiance variations. Maximum angular variations in measured canopy temperatures were 4–6°C (azimuth) and 2.5°C (nadir). Maximum angular variations in simulated temperatures using the modified rough surface model was 4°C. The rough surface model appeared to be sensitive to large gaps in the canopy height profile, which influenced the resultant predicted temperature. (author)

Field and Laboratory Investigation of USS3 Ultrasonic Sensors Capability for Non-contact Measurement of Pistachio Canopy Structure

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H Maghsoudi

2015-03-01

Full Text Available Electronic canopy characterization to determine structural properties is an important issue in tree crop management. Ultrasonic and optical sensors are the most used sensors for this purpose. The objective of this work was to assess the performance of an ultrasonic sensor under laboratory and field conditions in order to provide reliable estimations of distance measurements to apple tree canopies. To achieve this purpose, a methodology has been designed to analyze sensor performance in relation to foliage distance and to the effects of interference with adjacent sensors when working simultaneously. Results showed that the average error in distance measurement using the ultrasonic sensor in laboratory conditions was 0.64 cm. However, the increase of variability in field conditions reduced the accuracy of this kind of sensors when estimating distances to canopies. The average error in such situations was 3.19 cm. When analyzing interferences of adjacent sensors 30 cm apart, the average error was ±14.65 cm. When adjacent sensors were placed apart by 60 cm, the average error became 6.73 cm. The ultrasonic sensor tested has been proven to be suitable to estimate distances to the canopy in pistachio garden conditions when sensors are 60 cm apart or more and can, therefore, be used in a system to estimate structural canopy parameters in precision horticulture.

The influence of apical and basal defoliation on the canopy structure and biochemical composition of Vitis vinifera cv. Shiraz grapes and wine

Science.gov (United States)

Zhang, Pangzhen; Wu, Xiwen; Needs, Sonja; Liu, Di; Fuentes, Sigfredo; Howell, Kate

2017-07-01

Defoliation is a commonly used viticultural technique to balance the ratio between grapevine vegetation and fruit. Defoliation is conducted around the fruit zone to reduce the leaf photosynthetic area, and to increase sunlight exposure of grape bunches. Apical leaf removal is not commonly practiced, and therefore its influence on canopy structure and resultant wine aroma is not well studied. This study quantified the influences of apical and basal defoliation on canopy structure parameters using canopy cover photography and computer vision algorithms. The influence of canopy structure changes on the chemical compositions of grapes and wines was investigated over two vintages (2010-11 and 2015-16) in Yarra Valley, Australia. The Shiraz grapevines were subjected to five different treatments: no leaf removal (Ctrl); basal (TB) and apical (TD) leaf removal at veraison and intermediate ripeness, respectively. Basal leaf removal significantly reduced the leaf area index and foliage cover and increased canopy porosity, while apical leaf removal had limited influences on canopy parameters. However, the latter tended to result in lower alcohol level in the finished wine. Statistically significant increases in pH and decreases in TA was observed in shaded grapes, while no significant changes in the color profile and volatile compounds of the resultant wine were found. These results suggest that apical leaf removal is an effective method to reduce wine alcohol concentration with minimal influences on wine composition.

Spatial Upscaling of Soil Respiration under a Complex Canopy Structure in an Old‐Growth Deciduous Forest, Central Japan

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Vilanee Suchewaboripont

2017-01-01

Full Text Available The structural complexity, especially canopy and gap structure, of old‐growth forests affects the spatial variation of soil respiration (Rs. Without considering this variation, the upscaling of Rs from field measurements to the forest site will be biased. The present study examined responses of Rs to soil temperature (Ts and water content (W in canopy and gap areas, developed the best fit modelof Rs and used the unique spatial patterns of Rs and crown closure to upscale chamber measurements to the site scale in an old‐growth beech‐oak forest. Rs increased with an increase in Ts in both gap and canopy areas, but the effect of W on Rs was different between the two areas. The generalized linear model (GLM analysis identified that an empirical model of Rs with thecoupling of Ts and W was better than an exponential model of Rs with only Ts. Moreover, because of different responses of Rs to W between canopy and gap areas, it was necessary to estimate Rs in these areas separately. Consequently, combining the spatial patterns of Rs and the crown closure could allow upscaling of Rs from chamber‐based measurements to the whole site in the present study.

Contrasting effects of sampling scale on insect herbivores distribution in response to canopy structure

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Frederico S. Neves

2013-03-01

Full Text Available Species diversity of insect herbivores associated to canopy may vary local and geographically responding to distinct factors at different spatial scales. The aim of this study was to investigate how forest canopy structure affects insect herbivore species richness and abundance depending on feeding guilds´ specificities. We tested the hypothesis that habitat structure affects insect herbivore species richness and abundance differently to sap-sucking and chewing herbivore guilds. Two spatial scales were evaluated: inside tree crowns (fine spatial scale and canopy regions (coarse spatial scale. In three sampling sites we measured 120 tree crowns, grouped in five points with four contiguous tree crowns. Insects were sampled by beating method from each crown and data were summed up for analyzing each canopy region. In crowns (fine spatial scale we measured habitat structure: trunk circumference, tree height, canopy depth, number of ramifications and maximum ramification level. In each point, defined as a canopy region (coarse spatial scale, we measured habitat structure using a vertical cylindrical transect: tree species richness, leaf area, sum of strata heights and maximum canopy height. A principal component analysis based on the measured variables for each spatial scale was run to estimate habitat structure parameters. To test the effects of habitat structure upon herbivores, different general linear models were adjusted using the first two principal components as explanatory variables. Sap-sucking insect species richness and all herbivore abundances increased with size of crown at fine spatial scale. On the other hand, chewer species richness and abundance increased with resource quantity at coarse scale. Feeding specialization, resources availability, and agility are discussed as ecological causes of the found pattern.La diversidad de especies de insectos herbívoros asociados con el dosel puede variar geográficamente y responder a distintos

Exploring the spatial distribution of light interception and photosynthesis of canopies by means of a functional–structural plant model

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Sarlikioti, V.; de Visser, P. H. B.; Marcelis, L. F. M.

2011-01-01

Background and Aims At present most process-based models and the majority of three-dimensional models include simplifications of plant architecture that can compromise the accuracy of light interception simulations and, accordingly, canopy photosynthesis. The aim of this paper is to analyse canopy heterogeneity of an explicitly described tomato canopy in relation to temporal dynamics of horizontal and vertical light distribution and photosynthesis under direct- and diffuse-light conditions. Methods Detailed measurements of canopy architecture, light interception and leaf photosynthesis were carried out on a tomato crop. These data were used for the development and calibration of a functional–structural tomato model. The model consisted of an architectural static virtual plant coupled with a nested radiosity model for light calculations and a leaf photosynthesis module. Different scenarios of horizontal and vertical distribution of light interception, incident light and photosynthesis were investigated under diffuse and direct light conditions. Key Results Simulated light interception showed a good correspondence to the measured values. Explicitly described leaf angles resulted in higher light interception in the middle of the plant canopy compared with fixed and ellipsoidal leaf-angle distribution models, although the total light interception remained the same. The fraction of light intercepted at a north–south orientation of rows differed from east–west orientation by 10 % on winter and 23 % on summer days. The horizontal distribution of photosynthesis differed significantly between the top, middle and lower canopy layer. Taking into account the vertical variation of leaf photosynthetic parameters in the canopy, led to approx. 8 % increase on simulated canopy photosynthesis. Conclusions Leaf angles of heterogeneous canopies should be explicitly described as they have a big impact both on light distribution and photosynthesis. Especially, the vertical

Exploring the spatial distribution of light interception and photosynthesis of canopies by means of a functional-structural plant model.

Science.gov (United States)

Sarlikioti, V; de Visser, P H B; Marcelis, L F M

2011-04-01

At present most process-based models and the majority of three-dimensional models include simplifications of plant architecture that can compromise the accuracy of light interception simulations and, accordingly, canopy photosynthesis. The aim of this paper is to analyse canopy heterogeneity of an explicitly described tomato canopy in relation to temporal dynamics of horizontal and vertical light distribution and photosynthesis under direct- and diffuse-light conditions. Detailed measurements of canopy architecture, light interception and leaf photosynthesis were carried out on a tomato crop. These data were used for the development and calibration of a functional-structural tomato model. The model consisted of an architectural static virtual plant coupled with a nested radiosity model for light calculations and a leaf photosynthesis module. Different scenarios of horizontal and vertical distribution of light interception, incident light and photosynthesis were investigated under diffuse and direct light conditions. Simulated light interception showed a good correspondence to the measured values. Explicitly described leaf angles resulted in higher light interception in the middle of the plant canopy compared with fixed and ellipsoidal leaf-angle distribution models, although the total light interception remained the same. The fraction of light intercepted at a north-south orientation of rows differed from east-west orientation by 10 % on winter and 23 % on summer days. The horizontal distribution of photosynthesis differed significantly between the top, middle and lower canopy layer. Taking into account the vertical variation of leaf photosynthetic parameters in the canopy, led to approx. 8 % increase on simulated canopy photosynthesis. Leaf angles of heterogeneous canopies should be explicitly described as they have a big impact both on light distribution and photosynthesis. Especially, the vertical variation of photosynthesis in canopy is such that the

Phylogenetic Structure of Foliar Spectral Traits in Tropical Forest Canopies

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Kelly M. McManus

2016-02-01

Full Text Available The Spectranomics approach to tropical forest remote sensing has established a link between foliar reflectance spectra and the phylogenetic composition of tropical canopy tree communities vis-à-vis the taxonomic organization of biochemical trait variation. However, a direct relationship between phylogenetic affiliation and foliar reflectance spectra of species has not been established. We sought to develop this relationship by quantifying the extent to which underlying patterns of phylogenetic structure drive interspecific variation among foliar reflectance spectra within three Neotropical canopy tree communities with varying levels of soil fertility. We interpreted the resulting spectral patterns of phylogenetic signal in the context of foliar biochemical traits that may contribute to the spectral-phylogenetic link. We utilized a multi-model ensemble to elucidate trait-spectral relationships, and quantified phylogenetic signal for spectral wavelengths and traits using Pagel’s lambda statistic. Foliar reflectance spectra showed evidence of phylogenetic influence primarily within the visible and shortwave infrared spectral regions. These regions were also selected by the multi-model ensemble as those most important to the quantitative prediction of several foliar biochemical traits. Patterns of phylogenetic organization of spectra and traits varied across sites and with soil fertility, indicative of the complex interactions between the environmental and phylogenetic controls underlying patterns of biodiversity.

Strategic grazing management towards sustainable intensification at tropical pasture-based dairy systems.

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Congio, Guilhermo F S; Batalha, Camila D A; Chiavegato, Marília B; Berndt, Alexandre; Oliveira, Patrícia P A; Frighetto, Rosa T S; Maxwell, Thomas M R; Gregorini, Pablo; Da Silva, Sila C

2018-05-01

Agricultural systems are responsible for environmental impacts that can be mitigated through the adoption of more sustainable principles. Our objective was to investigate the influence of two pre-grazing targets (95% and maximum canopy light interception during pasture regrowth; LI 95% and LI Max , respectively) on sward structure and herbage nutritive value of elephant grass cv. Cameroon, and dry matter intake (DMI), milk yield, stocking rate, enteric methane (CH 4 ) emissions by Holstein × Jersey dairy cows. We hypothesized that grazing strategies modifying the sward structure of elephant grass (Pennisetum purpureum Schum.) improves nutritive value of herbage, increasing DMI and reducing intensity of enteric CH 4 emissions, providing environmental and productivity benefits to tropical pasture-based dairy systems. Results indicated that pre-sward surface height was greater for LI Max (≈135 cm) than LI 95% (≈100 cm) and can be used as a reliable field guide for monitoring sward structure. Grazing management based on LI 95% criteria improved herbage nutritive value and grazing efficiency, allowing greater DMI, milk yield and stocking rate by dairy cows. Daily enteric CH 4 emission was not affected; however, cows grazing elephant grass at LI 95% were more efficient and emitted 21% less CH 4 /kg of milk yield and 18% less CH 4 /kg of DMI. The 51% increase in milk yield per hectare overcame the 29% increase in enteric CH 4 emissions per hectare in LI 95% grazing management. Thereby the same resource allocation resulted in a 16% mitigation of the main greenhouse gas from pasture-based dairy systems. Overall, strategic grazing management is an environmental friendly practice that improves use efficiency of allocated resources through optimization of processes evolving plant, ruminant and their interface, and enhances milk production efficiency of tropical pasture-based systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Interactions between Canopy Structure and Herbaceous Biomass along Environmental Gradients in Moist Forest and Dry Miombo Woodland of Tanzania.

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Deo D Shirima

Full Text Available We have limited understanding of how tropical canopy foliage varies along environmental gradients, and how this may in turn affect forest processes and functions. Here, we analyse the relationships between canopy leaf area index (LAI and above ground herbaceous biomass (AGBH along environmental gradients in a moist forest and miombo woodland in Tanzania. We recorded canopy structure and herbaceous biomass in 100 permanent vegetation plots (20 m × 40 m, stratified by elevation. We quantified tree species richness, evenness, Shannon diversity and predominant height as measures of structural variability, and disturbance (tree stumps, soil nutrients and elevation as indicators of environmental variability. Moist forest and miombo woodland differed substantially with respect to nearly all variables tested. Both structural and environmental variables were found to affect LAI and AGBH, the latter being additionally dependent on LAI in moist forest but not in miombo, where other factors are limiting. Combining structural and environmental predictors yielded the most powerful models. In moist forest, they explained 76% and 25% of deviance in LAI and AGBH, respectively. In miombo woodland, they explained 82% and 45% of deviance in LAI and AGBH. In moist forest, LAI increased non-linearly with predominant height and linearly with tree richness, and decreased with soil nitrogen except under high disturbance. Miombo woodland LAI increased linearly with stem density, soil phosphorous and nitrogen, and decreased linearly with tree species evenness. AGBH in moist forest decreased with LAI at lower elevations whilst increasing slightly at higher elevations. AGBH in miombo woodland increased linearly with soil nitrogen and soil pH. Overall, moist forest plots had denser canopies and lower AGBH compared with miombo plots. Further field studies are encouraged, to disentangle the direct influence of LAI on AGBH from complex interrelationships between stand

Interactions between Canopy Structure and Herbaceous Biomass along Environmental Gradients in Moist Forest and Dry Miombo Woodland of Tanzania.

Science.gov (United States)

Shirima, Deo D; Pfeifer, Marion; Platts, Philip J; Totland, Ørjan; Moe, Stein R

2015-01-01

We have limited understanding of how tropical canopy foliage varies along environmental gradients, and how this may in turn affect forest processes and functions. Here, we analyse the relationships between canopy leaf area index (LAI) and above ground herbaceous biomass (AGBH) along environmental gradients in a moist forest and miombo woodland in Tanzania. We recorded canopy structure and herbaceous biomass in 100 permanent vegetation plots (20 m × 40 m), stratified by elevation. We quantified tree species richness, evenness, Shannon diversity and predominant height as measures of structural variability, and disturbance (tree stumps), soil nutrients and elevation as indicators of environmental variability. Moist forest and miombo woodland differed substantially with respect to nearly all variables tested. Both structural and environmental variables were found to affect LAI and AGBH, the latter being additionally dependent on LAI in moist forest but not in miombo, where other factors are limiting. Combining structural and environmental predictors yielded the most powerful models. In moist forest, they explained 76% and 25% of deviance in LAI and AGBH, respectively. In miombo woodland, they explained 82% and 45% of deviance in LAI and AGBH. In moist forest, LAI increased non-linearly with predominant height and linearly with tree richness, and decreased with soil nitrogen except under high disturbance. Miombo woodland LAI increased linearly with stem density, soil phosphorous and nitrogen, and decreased linearly with tree species evenness. AGBH in moist forest decreased with LAI at lower elevations whilst increasing slightly at higher elevations. AGBH in miombo woodland increased linearly with soil nitrogen and soil pH. Overall, moist forest plots had denser canopies and lower AGBH compared with miombo plots. Further field studies are encouraged, to disentangle the direct influence of LAI on AGBH from complex interrelationships between stand structure, environmental

Characterization and classification of vegetation canopy structure and distribution within the Great Smoky Mountains National Park using LiDAR

Energy Technology Data Exchange (ETDEWEB)

Kumar, Jitendra [ORNL; HargroveJr., William Walter [United States Department of Agriculture (USDA), United States Forest Service (USFS); Norman, Steven P [United States Department of Agriculture (USDA), United States Forest Service (USFS); Hoffman, Forrest M [ORNL; Newcomb, Doug [U.S. Fish and Wildlife Service

2015-01-01

Vegetation canopy structure is a critically important habit characteristic for many threatened and endangered birds and other animal species, and it is key information needed by forest and wildlife managers for monitoring and managing forest resources, conservation planning and fostering biodiversity. Advances in Light Detection and Ranging (LiDAR) technologies have enabled remote sensing-based studies of vegetation canopies by capturing three-dimensional structures, yielding information not available in two-dimensional images of the landscape pro- vided by traditional multi-spectral remote sensing platforms. However, the large volume data sets produced by airborne LiDAR instruments pose a significant computational challenge, requiring algorithms to identify and analyze patterns of interest buried within LiDAR point clouds in a computationally efficient manner, utilizing state-of-art computing infrastructure. We developed and applied a computationally efficient approach to analyze a large volume of LiDAR data and to characterize and map the vegetation canopy structures for 139,859 hectares (540 sq. miles) in the Great Smoky Mountains National Park. This study helps improve our understanding of the distribution of vegetation and animal habitats in this extremely diverse ecosystem.

Directional Canopy Emissivity Estimation Based on Spectral Invariants

Science.gov (United States)

Guo, M.; Cao, B.; Ren, H.; Yongming, D.; Peng, J.; Fan, W.

2017-12-01

Land surface emissivity is a crucial parameter for estimating land surface temperature from remote sensing data and also plays an important role in the physical process of surface energy and water balance from local to global scales. To our knowledge, the emissivity varies with surface type and cover. As for the vegetation, its canopy emissivity is dependent on vegetation types, viewing zenith angle and structure that changes in different growing stages. Lots of previous studies have focused on the emissivity model, but few of them are analytic and suited to different canopy structures. In this paper, a new physical analytic model is proposed to estimate the directional emissivity of homogenous vegetation canopy based on spectral invariants. The initial model counts the directional absorption in six parts: the direct absorption of the canopy and the soil, the absorption of the canopy and soil after a single scattering and after multiple scattering within the canopy-soil system. In order to analytically estimate the emissivity, the pathways of photons absorbed in the canopy-soil system are traced using the re-collision probability in Fig.1. After sensitive analysis on the above six absorptions, the initial complicated model was further simplified as a fixed mathematic expression to estimate the directional emissivity for vegetation canopy. The model was compared with the 4SAIL model, FRA97 model, FRA02 model and DART model in Fig.2, and the results showed that the FRA02 model is significantly underestimated while the FRA97 model is a little underestimated, on basis of the new model. On the contrary, the emissivity difference between the new model with the 4SAIL model and DART model was found to be less than 0.002. In general, since the new model has the advantages of mathematic expression with accurate results and clear physical meaning, the model is promising to be extended to simulate the directional emissivity for the discrete canopy in further study.

Canopy structure and topography effects on snow distribution at a catchment scale: Application of multivariate approaches

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Jenicek Michal

2018-03-01

Full Text Available The knowledge of snowpack distribution at a catchment scale is important to predict the snowmelt runoff. The objective of this study is to select and quantify the most important factors governing the snowpack distribution, with special interest in the role of different canopy structure. We applied a simple distributed sampling design with measurement of snow depth and snow water equivalent (SWE at a catchment scale. We selected eleven predictors related to character of specific localities (such as elevation, slope orientation and leaf area index and to winter meteorological conditions (such as irradiance, sum of positive air temperature and sum of new snow depth. The forest canopy structure was described using parameters calculated from hemispherical photographs. A degree-day approach was used to calculate melt factors. Principal component analysis, cluster analysis and Spearman rank correlation were applied to reduce the number of predictors and to analyze measured data. The SWE in forest sites was by 40% lower than in open areas, but this value depended on the canopy structure. The snow ablation in large openings was on average almost two times faster compared to forest sites. The snow ablation in the forest was by 18% faster after forest defoliation (due to the bark beetle. The results from multivariate analyses showed that the leaf area index was a better predictor to explain the SWE distribution during accumulation period, while irradiance was better predictor during snowmelt period. Despite some uncertainty, parameters derived from hemispherical photographs may replace measured incoming solar radiation if this meteorological variable is not available.

Influence of Forest-Canopy Morphology and Relief on Spectral Characteristics of Taiga Forests

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Zhirin, V. M.; Knyazeva, S. V.; Eydlina, S. P.

2017-12-01

The article deals with the results of a statistical analysis reflecting tendencies (trends) of the relationship between spectral characteristics of taiga forests, indicators of the morphological structure of forest canopy and illumination of the territory. The study was carried out on the example of the model forest territory of the Priangarskiy taiga region of Eastern Siberia (Krasnoyarsk krai) using historical data (forest inventory 1992, Landsat 5 TM 16.06.1989) and the digital elevation model. This article describes a method for determining the quantitative indicator of morphological structure of forest canopy based on taxation data, and the authors propose to subdivide the morphological structure into high complexity, medium complexity, and relatively simple. As a result of the research, dependences of average values of spectral brightness in near and short-wave infrared channels of a Landsat 5 TM image for dark-coniferous, light-coniferous and deciduous forests from the degree of complexity of the forest-canopy structure are received. A high level of variance and maximum brightness average values are marked in green moss (hilocominosa) dark-coniferous and various-grass (larioherbosa) dark-coniferous forests and light-coniferous forests with a complex structure of canopy. The parvifoliate forests are characterized by high values of brightness in stands with a relatively simple structure of the canopy and by a small variance in brightness of any degree of the structure of the canopy complexity. The increase in brightness for the lit slopes in comparison with shaded ones in all stands with a difficult morphological canopy structure is revealed. However, the brightness values of the lit and shaded slopes do not differ for stands with a medium complexity of the structure. It is noted that, in addition to the indicator of the forest-canopy structure, the possible impact on increasing the variance of spectral brightness for the taxation plot has a variability of the

Mapping Urban Tree Canopy Coverage and Structure using Data Fusion of High Resolution Satellite Imagery and Aerial Lidar

Science.gov (United States)

Elmes, A.; Rogan, J.; Williams, C. A.; Martin, D. G.; Ratick, S.; Nowak, D.

2015-12-01

Urban tree canopy (UTC) coverage is a critical component of sustainable urban areas. Trees provide a number of important ecosystem services, including air pollution mitigation, water runoff control, and aesthetic and cultural values. Critically, urban trees also act to mitigate the urban heat island (UHI) effect by shading impervious surfaces and via evaporative cooling. The cooling effect of urban trees can be seen locally, with individual trees reducing home HVAC costs, and at a citywide scale, reducing the extent and magnitude of an urban areas UHI. In order to accurately model the ecosystem services of a given urban forest, it is essential to map in detail the condition and composition of these trees at a fine scale, capturing individual tree crowns and their vertical structure. This paper presents methods for delineating UTC and measuring canopy structure at fine spatial resolution (body of methods, relying on a data fusion method to combine the information contained in high resolution WorldView-3 satellite imagery and aerial lidar data using an object-based image classification approach. The study area, Worcester, MA, has recently undergone a large-scale tree removal and reforestation program, following a pest eradication effort. Therefore, the urban canopy in this location provides a wide mix of tree age class and functional type, ideal for illustrating the effectiveness of the proposed methods. Early results show that the object-based classifier is indeed capable of identifying individual tree crowns, while continued research will focus on extracting crown structural characteristics using lidar-derived metrics. Ultimately, the resulting fine resolution UTC map will be compared with previously created UTC maps of the same area but for earlier dates, producing a canopy change map corresponding to the Worcester area tree removal and replanting effort.

Mechanistic study of aerosol dry deposition on vegetated canopies

International Nuclear Information System (INIS)

Petroff, A.

2005-04-01

The dry deposition of aerosols onto vegetated canopies is modelled through a mechanistic approach. The interaction between aerosols and vegetation is first formulated by using a set of parameters, which are defined at the local scale of one surface. The overall deposition is then deduced at the canopy scale through an up-scaling procedure based on the statistic distribution parameters. This model takes into account the canopy structural and morphological properties, and the main characteristics of the turbulent flow. Deposition mechanisms considered are Brownian diffusion, interception, initial and turbulent impaction, initially with coniferous branches and then with entire canopies of different roughness, such as grass, crop field and forest. (author)

Lidar-derived variables as a proxy for fungal species richness and composition in temperate Northern Europe

DEFF Research Database (Denmark)

Thers, Henrik; Brunbjerg, Ane Kirstine; Læssøe, Thomas

2017-01-01

. Lidar-derived variables performed best in predicting fungal richness and the first ordination axis, interpreted as a gradient from low and open herb-dominated communities over closed swards and scrubs to closed-canopy forests (cross validated r2 of 0.50 and 0.81, respectively). The number of red...

Vegetation Indices for Mapping Canopy Foliar Nitrogen in a Mixed Temperate Forest

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Zhihui Wang

2016-06-01

Full Text Available Hyperspectral remote sensing serves as an effective tool for estimating foliar nitrogen using a variety of techniques. Vegetation indices (VIs are a simple means of retrieving foliar nitrogen. Despite their popularity, few studies have been conducted to examine the utility of VIs for mapping canopy foliar nitrogen in a mixed forest context. In this study, we assessed the performance of 32 vegetation indices derived from HySpex airborne hyperspectral images for estimating canopy mass-based foliar nitrogen concentration (%N in the Bavarian Forest National Park. The partial least squares regression (PLSR was performed for comparison. These vegetation indices were classified into three categories that are mostly correlated to nitrogen, chlorophyll, and structural properties such as leaf area index (LAI. %N was destructively measured in 26 broadleaf, needle leaf, and mixed stand plots to represent the different species and canopy structure. The canopy foliar %N is defined as the plot-level mean foliar %N of all species weighted by species canopy foliar mass fraction. Our results showed that the variance of canopy foliar %N is mainly explained by functional type and species composition. The normalized difference nitrogen index (NDNI produced the most accurate estimation of %N (R2CV = 0.79, RMSECV = 0.26. A comparable estimation of %N was obtained by the chlorophyll index Boochs2 (R2CV = 0.76, RMSECV = 0.27. In addition, the mean NIR reflectance (800–850 nm, representing canopy structural properties, also achieved a good accuracy in %N estimation (R2CV = 0.73, RMSECV = 0.30. The PLSR model provided a less accurate estimation of %N (R2CV = 0.69, RMSECV = 0.32. We argue that the good performance of all three categories of vegetation indices in %N estimation can be attributed to the synergy among plant traits (i.e., canopy structure, leaf chemical and optical properties while these traits may converge across plant species for evolutionary reasons. Our

Effects of Grazing Management in Brachiaria grass-forage Peanut Pastures on Canopy Structure and Forage Intake.

Science.gov (United States)

Gomes, F K; Oliveira, M D B L; Homem, B G C; Boddey, R M; Bernardes, T F; Gionbelli, M P; Lara, M A S; Casagrande, D R

2018-06-13

Maintenance of mixed grass-legume pastures for stand longevity and improved animal utilization is a challenge in warm-season climates. The goal of this study was to assess grazing management on stand persistence, forage intake, and N balance of beef heifers grazing mixed pastures of Brachiaria brizantha and Arachis pintoi. A two-year experiment was carried out in Brazil, where four grazing management were assessed: rest period interrupted at 90%, 95%, and 100% of light interception (LI) and a fixed rest period of 42 days (90LI, 95LI, 100LI, and 42D, respectively). The LI were taken at 50 points at ground level and at five points above the canopy for each paddock using a canopy analyzer. For all treatments, the post-grazing stubble height was 15 cm. Botanical composition and canopy structure characteristics such as canopy height, forage mass, and vertical distribution of the morphological composition were evaluated pre-and post-grazing. Forage chemical composition, intake, and microbial synthesis were also determined. A randomized complete block design was used, considering the season of the year as a repeated measure over time. Grazing management and season were considered fixed, while block and year were considered random effects. In the summer, legume mass accounted for 19% of the canopy at 100LI, which was less than other treatments (a mean of 30%). The 100LI treatment had a greater grass stem mass compared with other treatments. In terms of vertical distribution for 100LI, 38.6% of the stem mass was above the stubble height, greater than the 5.7% for other treatments. The canopy structure limited neutral detergent fiber intake (P = 0.007) at 100LI (1.02% of BW/d), whereas 42D, 90LI, and 95LI treatments had NDF intake close to 1.2% of BW/d. The intake of digestible organic matter (OM; P = 0.007) and the ratio of crude protein/digestible OM (P < 0.001) were less at 100LI in relation to the other treatments. The production of microbial N (P < 0.001) and efficiency

A radiosity model for heterogeneous canopies in remote sensing

Science.gov (United States)

GarcíA-Haro, F. J.; Gilabert, M. A.; Meliá, J.

1999-05-01

A radiosity model has been developed to compute bidirectional reflectance from a heterogeneous canopy approximated by an arbitrary configuration of plants or clumps of vegetation, placed on the ground surface in a prescribed manner. Plants are treated as porous cylinders formed by aggregations of layers of leaves. This model explicitly computes solar radiation leaving each individual surface, taking into account multiple scattering processes between leaves and soil, and occlusion of neighboring plants. Canopy structural parameters adopted in this study have served to simplify the computation of the geometric factors of the radiosity equation, and thus this model has enabled us to simulate multispectral images of vegetation scenes. Simulated images have shown to be valuable approximations of satellite data, and then a sensitivity analysis to the dominant parameters of discontinuous canopies (plant density, leaf area index (LAI), leaf angle distribution (LAD), plant dimensions, soil optical properties, etc.) and scene (sun/ view angles and atmospheric conditions) has been undertaken. The radiosity model has let us gain a deep insight into the radiative regime inside the canopy, showing it to be governed by occlusion of incoming irradiance, multiple scattering of radiation between canopy elements and interception of upward radiance by leaves. Results have indicated that unlike leaf distribution, other structural parameters such as LAI, LAD, and plant dimensions have a strong influence on canopy reflectance. In addition, concepts have been developed that are useful to understand the reflectance behavior of the canopy, such as an effective LAI related to leaf inclination.

Synergy of VSWIR and LiDAR for Ecosystem Structure, Biomass, and Canopy Diversity

Science.gov (United States)

Cook, Bruce D.; Asner, Gregory P.

2010-01-01

This slide presentation reviews the use of Visible ShortWave InfraRed (VSWIR) Imaging Spectrometer and LiDAR to study ecosystem structure, biomass and canopy diversity. It is shown that the biophysical data from LiDAR and biochemical information from hyperspectral remote sensing provides complementary data for: (1) describing spatial patterns of vegetation and biodiversity, (2) characterizing relationships between ecosystem form and function, and (3) detecting natural and human induced change that affects the biogeochemical cycles.

Influence of Vegetation Structure on Lidar-derived Canopy Height and Fractional Cover in Forested Riparian Buffers During Leaf-Off and Leaf-On Conditions

Science.gov (United States)

Wasser, Leah; Day, Rick; Chasmer, Laura; Taylor, Alan

2013-01-01

Estimates of canopy height (H) and fractional canopy cover (FC) derived from lidar data collected during leaf-on and leaf-off conditions are compared with field measurements from 80 forested riparian buffer plots. The purpose is to determine if existing lidar data flown in leaf-off conditions for applications such as terrain mapping can effectively estimate forested riparian buffer H and FC within a range of riparian vegetation types. Results illustrate that: 1) leaf-off and leaf-on lidar percentile estimates are similar to measured heights in all plots except those dominated by deciduous compound-leaved trees where lidar underestimates H during leaf off periods; 2) canopy height models (CHMs) underestimate H by a larger margin compared to percentile methods and are influenced by vegetation type (conifer needle, deciduous simple leaf or deciduous compound leaf) and canopy height variability, 3) lidar estimates of FC are within 10% of plot measurements during leaf-on periods, but are underestimated during leaf-off periods except in mixed and conifer plots; and 4) depth of laser pulse penetration lower in the canopy is more variable compared to top of the canopy penetration which may influence within canopy vegetation structure estimates. This study demonstrates that leaf-off lidar data can be used to estimate forested riparian buffer canopy height within diverse vegetation conditions and fractional canopy cover within mixed and conifer forests when leaf-on lidar data are not available. PMID:23382966

Uptake of small particles by tree canopies

International Nuclear Information System (INIS)

Belot, Y.; Camus, H.; Gauthier, D.; Caput, C.

1992-01-01

Most of the deposition data that are available to assess the radiological consequences of an accident have been acquired for low-growing vegetation and are inadapted to forest areas. Consequently, a programme was undertaken to study the deposition of particles on components of different trees and extrapolate the experimental data so obtained to large-scale canopies. The experiments were performed in a wind tunnel allowing canopy components to be exposed to a flow of suspended fluorescent particles of reasonably uniform size. Emphasis was put on particles in the 0.3-1.2 μm subrange, because most of the radioactive particles sampled at long distance from sources are comprised in this size interval. The uptake rates were determined for bare and leaf bearing twigs of several evergreen species (Picea abies, Pinus sylvestris and Quercus ilex), as a function of wind speed and particle size. The deposition rates obtained for the tree components were then used as input to a model that describes the uptake of particles by a large-scale canopy under specified conditions of weather and canopy structure. The model accounts for the diffusion of particles between different strata of the canopy, as well as deposition of particles on the canopy components. It calculates the rates of particle deposition to the horizontal surface of the canopy, and the repartition of the deposited particles within the canopy. Increases in wind speed cause increased deposition, but the effect is less important that it would have been for larger particles. The deposition is relatively insensitive to the size of particles within the subrange considered in this study. 13 refs., 2 figs., 1 tab

Identifying the environmental factors that effect within canopy BVOC loss using a multilevel canopy model

Science.gov (United States)

Chan, W. S.; Fuentes, J. D.; Lerdau, M.

2010-12-01

This presentation will provide research findings to evaluate the hypothesis that the loss of biogenic volatile organic compound (BVOC) within plant canopies is dynamic and depends on factors such as plant canopy architecture (height and leaf area distribution), atmospheric turbulence, concentration of oxidants (OH, O3, NO3), and the reactivity of BVOC species. Results will be presented from a new one dimensional, multilevel canopy model that couples algorithms for canopy microclimate, leaf physiology, BVOC emission, turbulent transport, and atmospheric chemistry to investigate the relative importance of factors that impact BVOC loss within a forest canopy. Model sensitivity tests will be presented and discussed to identify factors driving canopy loss. Results show isoprene and monoterpene canopy losses as high as 9 and 18%, respectively, for tall canopies during the daytime. We hypothesize that canopy height and wind speed (i.e. canopy residence time) may be the most important in dictating within-canopy loss. This work will reduce the error in bottom-up flux estimates of BVOCs and ultimately improve parameterizations of BVOC sources in air quality models by accounting for within canopy processes.

Assessing the Impact of Canopy Structure Simplification in Common Multilayer Models on Irradiance Absorption Estimates of Measured and Virtually Created Fagus sylvatica (L. Stands

Directory of Open Access Journals (Sweden)

Pol Coppin

2009-11-01

Full Text Available Multilayer canopy representations are the most common structural stand representations due to their simplicity. Implementation of recent advances in technology has allowed scientists to simulate geometrically explicit forest canopies. The effect of simplified representations of tree architecture (i.e., multilayer representations of four Fagus sylvatica (L. stands, each with different LAI, on the light absorption estimates was assessed in comparison with explicit 3D geometrical stands. The absorbed photosynthetic radiation at stand level was calculated. Subsequently, each geometrically explicit 3D stand was compared with three multilayer models representing horizontal, uniform, and planophile leaf angle distributions. The 3D stands were created either by in situ measured trees or by modelled trees generated with the AMAP plant growth software. The Physically Based Ray Tracer (PBRT algorithm was used to simulate the irradiance absorbance of the detailed 3D architecture stands, while for the three multilayer representations, the probability of light interception was simulated by applying the Beer-Lambert’s law. The irradiance inside the canopies was characterized as direct, diffuse and scattered irradiance. The irradiance absorbance of the stands was computed during eight angular sun configurations ranging from 10° (near nadir up to 80° sun zenith angles. Furthermore, a leaf stratification (the number and angular distribution of leaves per LAI layer inside a canopy analysis between the 3D stands and the multilayer representations was performed, indicating the amount of irradiance each leaf is absorbing along with the percentage of sunny and shadow leaves inside the canopy. The results reveal that a multilayer representation of a stand, using a multilayer modelling approach, greatly overestimated the absorbed irradiance in an open canopy, while it provided a better approximation in the case of a closed canopy. Moreover, the actual stratification

Amazon Forest Structure from IKONOS Satellite Data and the Automated Characterization of Forest Canopy Properties

Science.gov (United States)

Michael Palace; Michael Keller; Gregory P. Asner; Stephen Hagen; Bobby . Braswell

2008-01-01

We developed an automated tree crown analysis algorithm using 1-m panchromatic IKONOS satellite images to examine forest canopy structure in the Brazilian Amazon. The algorithm was calibrated on the landscape level with tree geometry and forest stand data at the Fazenda Cauaxi (3.75◦ S, 48.37◦ W) in the eastern Amazon, and then compared with forest...

Coherence Effects in L-Band Active and Passive Remote Sensing of Quasi-Periodic Corn Canopies

Science.gov (United States)

Utku, Cuneyt; Lang, Roger H.

2011-01-01

Due to their highly random nature, vegetation canopies can be modeled using the incoherent transport theory for active and passive remote sensing applications. Agricultural vegetation canopies however are generally more structured than natural vegetation. The inherent row structure in agricultural canopies induces coherence effects disregarded by the transport theory. The objective of this study is to demonstrate, via Monte-Carlo simulations, these coherence effects on L-band scattering and thermal emission from corn canopies consisting of only stalks.

VitiCanopy: A Free Computer App to Estimate Canopy Vigor and Porosity for Grapevine.

Science.gov (United States)

De Bei, Roberta; Fuentes, Sigfredo; Gilliham, Matthew; Tyerman, Steve; Edwards, Everard; Bianchini, Nicolò; Smith, Jason; Collins, Cassandra

2016-04-23

Leaf area index (LAI) and plant area index (PAI) are common and important biophysical parameters used to estimate agronomical variables such as canopy growth, light interception and water requirements of plants and trees. LAI can be either measured directly using destructive methods or indirectly using dedicated and expensive instrumentation, both of which require a high level of know-how to operate equipment, handle data and interpret results. Recently, a novel smartphone and tablet PC application, VitiCanopy, has been developed by a group of researchers from the University of Adelaide and the University of Melbourne, to estimate grapevine canopy size (LAI and PAI), canopy porosity, canopy cover and clumping index. VitiCanopy uses the front in-built camera and GPS capabilities of smartphones and tablet PCs to automatically implement image analysis algorithms on upward-looking digital images of canopies and calculates relevant canopy architecture parameters. Results from the use of VitiCanopy on grapevines correlated well with traditional methods to measure/estimate LAI and PAI. Like other indirect methods, VitiCanopy does not distinguish between leaf and non-leaf material but it was demonstrated that the non-leaf material could be extracted from the results, if needed, to increase accuracy. VitiCanopy is an accurate, user-friendly and free alternative to current techniques used by scientists and viticultural practitioners to assess the dynamics of LAI, PAI and canopy architecture in vineyards, and has the potential to be adapted for use on other plants.

VitiCanopy: A Free Computer App to Estimate Canopy Vigor and Porosity for Grapevine

Directory of Open Access Journals (Sweden)

Roberta De Bei

2016-04-01

Full Text Available Leaf area index (LAI and plant area index (PAI are common and important biophysical parameters used to estimate agronomical variables such as canopy growth, light interception and water requirements of plants and trees. LAI can be either measured directly using destructive methods or indirectly using dedicated and expensive instrumentation, both of which require a high level of know-how to operate equipment, handle data and interpret results. Recently, a novel smartphone and tablet PC application, VitiCanopy, has been developed by a group of researchers from the University of Adelaide and the University of Melbourne, to estimate grapevine canopy size (LAI and PAI, canopy porosity, canopy cover and clumping index. VitiCanopy uses the front in-built camera and GPS capabilities of smartphones and tablet PCs to automatically implement image analysis algorithms on upward-looking digital images of canopies and calculates relevant canopy architecture parameters. Results from the use of VitiCanopy on grapevines correlated well with traditional methods to measure/estimate LAI and PAI. Like other indirect methods, VitiCanopy does not distinguish between leaf and non-leaf material but it was demonstrated that the non-leaf material could be extracted from the results, if needed, to increase accuracy. VitiCanopy is an accurate, user-friendly and free alternative to current techniques used by scientists and viticultural practitioners to assess the dynamics of LAI, PAI and canopy architecture in vineyards, and has the potential to be adapted for use on other plants.

ForestCrowns: a software tool for analyzing ground-based digital photographs of forest canopies

Science.gov (United States)

Matthew F. Winn; Sang-Mook Lee; Phillip A. Araman

2013-01-01

Canopy coverage is a key variable used to characterize forest structure. In addition, the light transmitted through the canopy is an important ecological indicator of plant and animal habitat and understory climate conditions. A common ground-based method used to document canopy coverage is to take digital photographs from below the canopy. To assist with analyzing...

The influence of current speed and vegetation density on flow structure in two macrotidal eelgrass canopies

Science.gov (United States)

Lacy, Jessica R.; Wyllie-Echeverria, Sandy

2011-01-01

The influence of eelgrass (Zostera marina) on near-bed currents, turbulence, and drag was investigated at three sites in two eelgrass canopies of differing density and at one unvegetated site in the San Juan archipelago of Puget Sound, Washington, USA. Eelgrass blade length exceeded 1 m. Velocity profiles up to 1.5 m above the sea floor were collected over a spring-neap tidal cycle with a downward-looking pulse-coherent acoustic Doppler profiler above the canopies and two acoustic Doppler velocimeters within the canopies. The eelgrass attenuated currents by a minimum of 40%, and by more than 70% at the most densely vegetated site. Attenuation decreased with increasing current speed. The data were compared to the shear-layer model of vegetated flows and the displaced logarithmic model. Velocity profiles outside the meadows were logarithmic. Within the canopies, most profiles were consistent with the shear-layer model, with a logarithmic layer above the canopy. However, at the less-dense sites, when currents were strong, shear at the sea floor and above the canopy was significant relative to shear at the top of the canopy, and the velocity profiles more closely resembled those in a rough-wall boundary layer. Turbulence was strong at the canopy top and decreased with height. Friction velocity at the canopy top was 1.5–2 times greater than at the unvegetated, sandy site. The coefficient of drag CD on the overlying flow derived from the logarithmic velocity profile above the canopy, was 3–8 times greater than at the unvegetated site (0.01–0.023 vs. 2.9 × 10−3).

Canopy wake measurements using multiple scanning wind LiDARs

Science.gov (United States)

Markfort, C. D.; Carbajo Fuertes, F.; Iungo, V.; Stefan, H. G.; Porte-Agel, F.

2014-12-01

Canopy wakes have been shown, in controlled wind tunnel experiments, to significantly affect the fluxes of momentum, heat and other scalars at the land and water surface over distances of ˜O(1 km), see Markfort et al. (EFM, 2013). However, there are currently no measurements of the velocity field downwind of a full-scale forest canopy. Point-based anemometer measurements of wake turbulence provide limited insight into the extent and details of the wake structure, whereas scanning Doppler wind LiDARs can provide information on how the wake evolves in space and varies over time. For the first time, we present measurements of the velocity field in the wake of a tall patch of forest canopy. The patch consists of two uniform rows of 40-meter tall deciduous, plane trees, which border either side of the Allée de Dorigny, near the EPFL campus. The canopy is approximately 250 m long, and it is approximately 40 m wide, along the direction of the wind. A challenge faced while making field measurements is that the wind rarely intersects a canopy normal to the edge. The resulting wake flow may be deflected relative to the mean inflow. Using multiple LiDARs, we measure the evolution of the wake due to an oblique wind blowing over the canopy. One LiDAR is positioned directly downwind of the canopy to measure the flow along the mean wind direction and the other is positioned near the canopy to evaluate the transversal component of the wind and how it varies with downwind distance from the canopy. Preliminary results show that the open trunk space near the base of the canopy results in a surface jet that can be detected just downwind of the canopy and farther downwind dissipates as it mixes with the wake flow above. A time-varying recirculation zone can be detected by the periodic reversal of the velocity near the surface, downwind of the canopy. The implications of canopy wakes for measurement and modeling of surface fluxes will be discussed.

Automated detection of branch dimensions in woody skeletons of leafless fruit tree canopies

NARCIS (Netherlands)

Bucksch, A.; Fleck, S.

2009-01-01

Light driven physiological processes of tree canopies need to be modelled based on detailed 3Dcanopy structure – we explore the possibilities offered by terrestrial LIDAR to automatically represent woody skeletons of leafless trees as a basis for adequate models of canopy structure. The automatic

Movement patterns of three arboreal primates in a Neotropical moist forest explained by LiDAR-estimated canopy structure

NARCIS (Netherlands)

McLean, Kevin A.; Trainor, Anne M.; Asner, Gregory P.; Crofoot, Margaret C.; Hopkins, Mariah E.; Campbell, Christina J.; Martin, Roberta E.; Knapp, David E.; Jansen, Patrick A.

2016-01-01

Context: Many arboreal mammals in Neotropical forests are important seed dispersers that influence the spatial patterns of tree regeneration via their movement patterns, which in turn are determined by the canopy structure of the forest itself. However, the relationship between arboreal mammal

Soil types and forest canopy structures in southern Missouri: A first look with AIS data

Science.gov (United States)

Green, G. M.; Arvidson, R. E.

1986-01-01

Spectral reflectance properties of deciduous oak-hickory forests covering the eastern half of the Rolla Quadrangle were examined using Thematic Mapper (TM) data acquired in August and December, 1982 and Airborne Imaging Spectrometer (AIS) data acquired in August, 1985. For the TM data distinctly high relative reflectance values (greater than 0.3) in the near infrared (Band 4, 0.73 to 0.94 micrometers) correspond to regions characterized by xeric (dry) forests that overlie soils with low water retention capacities. These soils are derived primarily from rhyolites. More mesic forests characterized by lower TM band 4 relative reflectances are associated with soils of higher retention capacities derived predominately from non-cherty carbonates. The major factors affecting canopy reflectance appear to be the leaf area index (LAI) and leaf optical properties. The Suits canopy reflectance model predicts the relative reflectance values for the xeric canopies. The mesic canopy reflectance is less well matched and incorporation of canopy shadowing caused by the irregular nature of the mesic canopy may be necessary. Preliminary examination of high spectral resolution AIS data acquired in August of 1985 reveals no more information than found in the broad band TM data.

Turbulent flows over sparse canopies

Science.gov (United States)

Sharma, Akshath; García-Mayoral, Ricardo

2018-04-01

Turbulent flows over sparse and dense canopies exerting a similar drag force on the flow are investigated using Direct Numerical Simulations. The dense canopies are modelled using a homogeneous drag force, while for the sparse canopy, the geometry of the canopy elements is represented. It is found that on using the friction velocity based on the local shear at each height, the streamwise velocity fluctuations and the Reynolds stress within the sparse canopy are similar to those from a comparable smooth-wall case. In addition, when scaled with the local friction velocity, the intensity of the off-wall peak in the streamwise vorticity for sparse canopies also recovers a value similar to a smooth-wall. This indicates that the sparse canopy does not significantly disturb the near-wall turbulence cycle, but causes its rescaling to an intensity consistent with a lower friction velocity within the canopy. In comparison, the dense canopy is found to have a higher damping effect on the turbulent fluctuations. For the case of the sparse canopy, a peak in the spectral energy density of the wall-normal velocity, and Reynolds stress is observed, which may indicate the formation of Kelvin-Helmholtz-like instabilities. It is also found that a sparse canopy is better modelled by a homogeneous drag applied on the mean flow alone, and not the turbulent fluctuations.

Tree Death Not Resulting in Gap Creation: An Investigation of Canopy Dynamics of Northern Temperate Deciduous Forests

Directory of Open Access Journals (Sweden)

Jean-Francois Senécal

2018-01-01

Full Text Available Several decades of research have shown that canopy gaps drive tree renewal processes in the temperate deciduous forest biome. In the literature, canopy gaps are usually defined as canopy openings that are created by partial or total tree death of one or more canopy trees. In this study, we investigate linkages between tree damage mechanisms and the formation or not of new canopy gaps in northern temperate deciduous forests. We studied height loss processes in unmanaged and managed forests recovering from partial cutting with multi-temporal airborne Lidar data. The Lidar dataset was used to detect areas where canopy height reduction occurred, which were then field-studied to identify the tree damage mechanisms implicated. We also sampled the density of leaf material along transects to characterize canopy structure. We used the dataset of the canopy height reduction areas in a multi-model inference analysis to determine whether canopy structures or tree damage mechanisms most influenced the creation of new canopy gaps within canopy height reduction areas. According to our model, new canopy gaps are created mainly when canopy damage enlarges existing gaps or when height is reduced over areas without an already established dense sub-canopy tree layer.

Winter Radiation Extinction and Reflection in a Boreal Pine Canopy: Measurements and Modelling

Science.gov (United States)

Pomeroy, J. W.; Dion, K.

1996-12-01

Predicting the rate of snowmelt and intercepted snow sublimation in boreal forests requires an understanding of the effects of snow-covered conifers on the exchange of radiant energy. This study examined the amount of intercepted snow on a jack pine canopy in the boreal forest of central Saskatchewan and the shortwave and net radiation exchange with this canopy, to determine the effect of intercepted snow and canopy structure on shortwave radiation reflection and extinction and net radiation attenuation in a boreal forest. The study focused on clear sky conditions, which are common during winter in the continental boreal forest. Intercepted snow was found to have no influence on the clear-sky albedo of the canopy, the extinction of short wave radiation by the canopy or ratio of net radiation at the canopy top to that at the surface snow cover. Because of the low albedo of the snow-covered canopy, net radiation at the canopy top remains positive and a large potential source of energy for sublimation. The canopy albedo declines somewhat as the extinction efficiency of the underlying canopy increases. The extinction efficiency of short wave radiation in the canopy depends on solar angle because of the approximately horizontal orientation of pine branches. For low solar angles above the horizon, the extinction efficiency is quite low and short wave transmissivity through the canopy is relatively high. As the solar angle increases, extinction increases up to angles of about 50̂, and then declines. Extinction of short wave radiation in the canopy strongly influences the attenuation of net radiation by the canopy. Short wave radiation that is extinguished by branches is radiated as long wave, partly downwards to the snow cover. The ratio of net radiation at the canopy top to that at the snow cover surface increases with the extinction of short wave radiation and is negative for low extinction efficiencies. For the pine canopy examined, the daily mean net radiation at the

Large eddy simulation of the atmospheric boundary layer above a forest canopy

Science.gov (United States)

Alam, Jahrul

2017-11-01

A goal of this talk is to discuss large eddy simulation (LES) of atmospheric turbulence within and above a canopy/roughness sublayer, where coherent turbulence resembles a turbulent mixing layer. The proposed LES does not resolve the near wall region. Instead, a near surface canopy stress model has been combined with a wall adapting local eddy viscosity model. The canopy stress is represented as a three-dimensional time dependent momentum sink, where the total kinematic drag of the canopy is adjusted based on the measurements in a forest canopy. This LES has been employed to analyze turbulence structures in the canopy/roughness sublayer. Results indicate that turbulence is more efficient at transporting momentum and scalars in the roughness sublayer. The LES result has been compared with the turbulence profile measured over a forest canopy to predict the turbulence statistics in the inertial sublayer above the canopy. Turbulence statistics between the inertial sublayer, the canopy sublayer, and the rough-wall boundary layer have been compared to characterize whether turbulence in the canopy sublayer resembles a turbulent mixing layer or a boundary layer. The canopy turbulence is found dominated by energetic eddies much larger in scale than the individual roughness elements. Financial support from the National Science and Research Council (NSERC), Canada is acknowledged.

Sward and milk production response to early turnout of dairy cows to pasture in Finland

Directory of Open Access Journals (Sweden)

P. VIRKAJÄRVI

2008-12-01

Full Text Available The timing of turnout is an important factor affecting the grazing management of dairy cows. However,its consequences are not well known in the short grazing season of northern Europe. Thus, the effect of the turnout date of dairy cows to pasture on sward regrowth, herbage mass production and milk production was studied in two experiments,1a grazing trial with 16 Holstein-Friesian dairy cows and 2a plot trial where the treatments simulated the grazing trial.The treatments were early turnout (1 Juneand normal turnout (6 June.Early turnout decreased the annual herbage mass (HM production in the plot trial (P =0.005,but due to a higher average organic matter (OMdigestibility (P 0.05. Although early turnout had no effect on milk yields it meant easier management of pastures.;

Effect of vegetative canopy architecture on vertical transport of massless particles

Science.gov (United States)

A series of large-eddy simulations were performed to examine the effect of canopy architecture on particle dispersion. A heterogeneous canopy geometry was simulated that consists of a set of infinitely repeating vegetation rows. Simulations in which row structure was approximately resolved were comp...

Simultaneous improvement in water use, productivity and albedo through canopy structural modification

Science.gov (United States)

Drewry, Darren; Kumar, Praveen; Long, Stephen

2015-04-01

Agricultural lands provide a tremendous opportunity to address challenges at the intersection of food and water security and climate change. Global demand for the major grain and seed crops is beginning to outstrip production, while population growth and the expansion of the global middle class have motivated calls for a doubling of food production by the middle of this century. This is occurring as yield gains for the major food crops have stagnated. At current rates of yield improvement this doubling will not be achieved. Plants have evolved to maximize the capture of radiation in the upper leaves, resulting in sub-optimal monoculture crop fields for maximizing productivity and other biogeophysical services. Using the world's most important protein crop, soybean, as an example, we show that by applying numerical optimization to a micrometeorological crop canopy model that significant, simultaneous gains in water use, productivity and reflectivity are possible with no increased demand on resources. Here we apply the MLCan multi-layer canopy biophysical model, which vertically resolves the radiation and micro-environmental variations that stimulate biochemical and ecophysiological functions that govern canopy-atmosphere exchange processes. At each canopy level photosynthesis, stomatal conductance, and energy balance are solved simultaneously for shaded and sunlit foliage. A multi-layer sub-surface model incorporates water availability as a function of root biomass distribution. MLCan runs at sub-hourly temporal resolution, allowing it to capture variability in CO2, water and energy exchange as a function of environmental variability. By modifying total canopy leaf area, its vertical distribution, leaf angle, and shortwave radiation reflectivity, all traits available in most major crop germplasm collections, we show that increases in either productivity (7%), water use (13%) or albedo (34%) could be achieved with no detriment to the other objectives, under climate

Seasonal changes in camera-based indices from an open canopy black spruce forest in Alaska, and comparison with indices from a closed canopy evergreen coniferous forest in Japan

Science.gov (United States)

Nagai, Shin; Nakai, Taro; Saitoh, Taku M.; Busey, Robert C.; Kobayashi, Hideki; Suzuki, Rikie; Muraoka, Hiroyuki; Kim, Yongwon

2013-06-01

Evaluation of the carbon, water, and energy balances in evergreen coniferous forests requires accurate in situ and satellite data regarding their spatio-temporal dynamics. Daily digital camera images can be used to determine the relationships among phenology, gross primary productivity (GPP), and meteorological parameters, and to ground-truth satellite observations. In this study, we examine the relationship between seasonal variations in camera-based canopy surface indices and eddy-covariance-based GPP derived from field studies in an Alaskan open canopy black spruce forest and in a Japanese closed canopy cedar forest. The ratio of the green digital number to the total digital number, hue, and GPP showed a bell-shaped seasonal profile at both sites. Canopy surface images for the black spruce forest and cedar forest mainly detected seasonal changes in vegetation on the floor of the forest and in the tree canopy, respectively. In contrast, the seasonal cycles of the ratios of the red and blue digital numbers to the total digital numbers differed between the two sites, possibly due to differences in forest structure and leaf color. These results suggest that forest structural characteristics, such as canopy openness and seasonal forest-floor changes, should be considered during continuous observations of phenology in evergreen coniferous forests.

Surface wave energy absorption by a partially submerged bio-inspired canopy.

Science.gov (United States)

Nové-Josserand, C; Castro Hebrero, F; Petit, L-M; Megill, W M; Godoy-Diana, R; Thiria, B

2018-03-27

Aquatic plants are known to protect coastlines and riverbeds from erosion by damping waves and fluid flow. These flexible structures absorb the fluid-borne energy of an incoming fluid by deforming mechanically. In this paper we focus on the mechanisms involved in these fluid-elasticity interactions, as an efficient energy harvesting system, using an experimental canopy model in a wave tank. We study an array of partially-submerged flexible structures that are subjected to the action of a surface wave field, investigating in particular the role of spacing between the elements of the array on the ability of our system to absorb energy from the flow. The energy absorption potential of the canopy model is examined using global wave height measurements for the wave field and local measurements of the elastic energy based on the kinematics of each element of the canopy. We study different canopy arrays and show in particular that flexibility improves wave damping by around 40%, for which half is potentially harvestable.

Effects of Fetch on Turbulent Flow and Pollutant Dispersion Within a Cubical Canopy

Science.gov (United States)

Michioka, Takenobu; Takimoto, Hiroshi; Ono, Hiroki; Sato, Ayumu

2018-03-01

The effects of fetch on turbulent flow and pollutant dispersion within a canopy formed by regularly-spaced cubical objects is investigated using large-eddy simulation. Six tracer gases are simultaneously released from a ground-level continuous pollutant line source placed parallel to the spanwise axis at the first, second, third, fifth, seventh and tenth rows. Beyond the seventh row, the standard deviations of the fluctuations in the velocity components and the Reynolds shear stresses reach nearly equivalent states. Low-frequency turbulent flow is generated near the bottom surface around the first row and develops as the fetch increases. The turbulent flow eventually passes through the canopy at a near-constant interval. The mean concentration within the canopy reaches a near-constant value beyond the seventh row. In the first and second rows, narrow coherent structures frequently affect the pollutant escape from the top of the canopy. These structures increase in width as the fetch increases, and they mainly affect the removal of pollutants from the canopy.

Testing a ground-based canopy model using the wind river canopy crane

Science.gov (United States)

Robert Van Pelt; Malcolm P. North

1999-01-01

A ground-based canopy model that estimates the volume of occupied space in forest canopies was tested using the Wind River Canopy Crane. A total of 126 trees in a 0.25 ha area were measured from the ground and directly from a gondola suspended from the crane. The trees were located in a low elevation, old-growth forest in the southern Washington Cascades. The ground-...

Plant functional traits and canopy structure control the relationship between photosynthetic CO2 uptake and far-red sun-induced fluorescence in a Mediterranean grassland under different nutrient availability.

Science.gov (United States)

Migliavacca, Mirco; Perez-Priego, Oscar; Rossini, Micol; El-Madany, Tarek S; Moreno, Gerardo; van der Tol, Christiaan; Rascher, Uwe; Berninger, Anna; Bessenbacher, Verena; Burkart, Andreas; Carrara, Arnaud; Fava, Francesco; Guan, Jin-Hong; Hammer, Tiana W; Henkel, Kathrin; Juarez-Alcalde, Enrique; Julitta, Tommaso; Kolle, Olaf; Martín, M Pilar; Musavi, Talie; Pacheco-Labrador, Javier; Pérez-Burgueño, Andrea; Wutzler, Thomas; Zaehle, Sönke; Reichstein, Markus

2017-05-01

Sun-induced fluorescence (SIF) in the far-red region provides a new noninvasive measurement approach that has the potential to quantify dynamic changes in light-use efficiency and gross primary production (GPP). However, the mechanistic link between GPP and SIF is not completely understood. We analyzed the structural and functional factors controlling the emission of SIF at 760 nm (F 760 ) in a Mediterranean grassland manipulated with nutrient addition of nitrogen (N), phosphorous (P) or nitrogen-phosphorous (NP). Using the soil-canopy observation of photosynthesis and energy (SCOPE) model, we investigated how nutrient-induced changes in canopy structure (i.e. changes in plant forms abundance that influence leaf inclination distribution function, LIDF) and functional traits (e.g. N content in dry mass of leaves, N%, Chlorophyll a+b concentration (Cab) and maximum carboxylation capacity (V cmax )) affected the observed linear relationship between F 760 and GPP. We conclude that the addition of nutrients imposed a change in the abundance of different plant forms and biochemistry of the canopy that controls F 760 . Changes in canopy structure mainly control the GPP-F 760 relationship, with a secondary effect of Cab and V cmax . In order to exploit F 760 data to model GPP at the global/regional scale, canopy structural variability, biodiversity and functional traits are important factors that have to be considered. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

What controls stemflow? A LiDAR-based investigation of individual tree canopy structure, neighborhood conditions, and meteorological factors

Science.gov (United States)

Yankine, S. A.; Van Stan, J. T., II; Mesta, D. C.; Côté, J. F.; Hildebrandt, A.; Friesen, J.; Maldonado, G.

2017-12-01

Stemflow is a pointed hydrologic flux at the base of tree stems that has been linked to a host of biogeochemical processes in vegetated landscapes. Much work has been done to examine controls over stemflow water yield, finding three major factors: individual tree canopy structure, meteorological variables, and neighborhood conditions. However, the authors are unaware of any study to directly quantify all factors using a combination of terrestrial LiDAR and micrometeorological monitoring methods. This study directly quantifies individual Pinus palustris tree canopy characteristics (trunk volume and angle, branch volume and angle from 1st-to-3rd order, bark roughness, and height), 10-m radius neighborhood properties (number of trees, mean diameter and height, mean distance from study tree, and canopy overlap), and above-canopy storm conditions (magnitude, intensity, mean/max wind speed, and vapor pressure deficit) directly at the site. Stemflow production was 1% of rainfall, ranging from 0.3-59 L per storm from individual trees. Preliminary findings from storms (5-176 mm in magnitude) indicate that all individual tree characteristics, besides bark roughness, have little influence on stemflow generation. Bark roughness altered stemflow generation by affecting trunk water storage (0.1-0.7 mm) and wet trunk evaporation rates (0.005-0.03 mm/h). The strongest influence over stemflow generation from individual trees was the interaction between neighborhood characteristics and meteorological conditions (primarily rainfall amount and, secondarily, rainfall intensity).

Winter radiation extinction and reflection in a boreal pine canopy: measurements and modelling

International Nuclear Information System (INIS)

Pomeroy, J.W.; Dion, K.

1996-01-01

Predicting the rate of snow melt and intercepted snow sublimation in boreal forests requires an understanding of the effects of snow-covered conifers on the exchange of radiant energy. This study examined the amount of intercepted snow on a jack pine canopy in the boreal forest of central Saskatchewan and the shortwave and net radiation exchange with this canopy, to determine the effect of intercepted snow and canopy structure on shortwave radiation reflection and extinction and net radiation attenuation in a boreal forest. The study focused on clear sky conditions, which are common during winter in the continental boreal forest. Intercepted snow was found to have no influence on the clear-sky albedo of the canopy, the extinction of short wave radiation by the canopy or ratio of net radiation at the canopy top to that at the surface snow cover. Because of the low albedo of the snow-covered canopy, net radiation at the canopy top remains positive and a large potential source of energy for sublimation. The canopy albedo declines somewhat as the extinction efficiency of the underlying canopy increases. The extinction efficiency of short wave radiation in the canopy depends on solar angle because of the approximately horizontal orientation of pine branches. For low solar angles above the horizon, the extinction efficiency is quite low and short wave transmissivity through the canopy is relatively high. As the solar angle increases, extinction increases up to angles of about 50°, and then declines. Extinction of short wave radiation in the canopy strongly influences the attenuation of net radiation by the canopy. Short wave radiation that is extinguished by branches is radiated as long wave, partly downwards to the snow cover. The ratio of net radiation at the canopy top to that at the snow cover surface increases with the extinction of short wave radiation and is negative for low extinction efficiencies. For the pine canopy examined, the daily mean net radiation at

Diurnal Patterns of Direct Light Extinction in Two Tropical Forest Canopies

Science.gov (United States)

Cushman, K.; Silva, C. E.; Kellner, J. R.

2016-12-01

The extent to which net ecosystem production is light-limited in Neotropical forests is poorly understood. This is due in part to our limited knowledge of how light moves through complex canopies to different layers of leaves, and the extent to which structural changes in canopies modify the amount of light absorbed by the landscape to drive photosynthesis. Systematic diurnal changes in solar angle, leaf angle, and wind speed suggest that patterns of light attenuation change over the course of the day in tropical forests. In this study, we characterize the extinction of direct light through the canopies of two forests in Panama using high-resolution, three-dimensional measurements from a small footprint, discrete return airborne laser scanner mounted on the gondola of a canopy crane. We hypothesized that light penetrates deeper into canopies during the middle of the day because changes in leaf angle by light-saturated leaves temporarily reduce effective canopy leaf area, and because greater wind speeds increase sunflecks. Also, we hypothesized that rates of light extinction are greater in the wetter forest that receives less direct sunlight because light saturation in upper leaves is less prevalent. We collected laser measurements with resolution of approximately 5,000 points per square meter of ground every 90 minutes over the course of one day each at Parque Natural Metropolitano (1740 mm annual rainfall) and Parque Nacional San Lorenzo (3300 mm annual rainfall) during the dry season in April, 2016. Using a voxel-based approach, we compared the actual versus potential distance traveled by laser beams through each volume of the canopy. We fit an exponential model to quantify the rate of light extinction. We found that rates of light extinction vary spatially, temporally, and by site. These results indicate that variation in forest structure changes patterns of light attenuation through the canopy over multiple scales.

Simulation of ICESat-2 canopy height retrievals for different ecosystems

Science.gov (United States)

Neuenschwander, A. L.

2016-12-01

Slated for launch in late 2017 (or early 2018), the ICESat-2 satellite will provide a global distribution of geodetic measurements from a space-based laser altimeter of both the terrain surface and relative canopy heights which will provide a significant benefit to society through a variety of applications ranging from improved global digital terrain models to producing distribution of above ground vegetation structure. The ATLAS instrument designed for ICESat-2, will utilize a different technology than what is found on most laser mapping systems. The photon counting technology of the ATLAS instrument onboard ICESat-2 will record the arrival time associated with a single photon detection. That detection can occur anywhere within the vertical distribution of the reflected signal, that is, anywhere within the vertical distribution of the canopy. This uncertainty of where the photon will be returned from within the vegetation layer is referred to as the vertical sampling error. Preliminary simulation studies to estimate vertical sampling error have been conducted for several ecosystems including woodland savanna, montane conifers, temperate hardwoods, tropical forest, and boreal forest. The results from these simulations indicate that the canopy heights reported on the ATL08 data product will underestimate the top canopy height in the range of 1 - 4 m. Although simulation results indicate the ICESat-2 will underestimate top canopy height, there is, however, a strong correlation between ICESat-2 heights and relative canopy height metrics (e.g. RH75, RH90). In tropical forest, simulation results indicate the ICESat-2 height correlates strongly with RH90. Similarly, in temperate broadleaf forest, the simulated ICESat-2 heights were also strongly correlated with RH90. In boreal forest, the simulated ICESat-2 heights are strongly correlated with RH75 heights. It is hypothesized that the correlations between simulated ICESat-2 heights and canopy height metrics are a

Four things we don't know about scalar transfer from plant canopies

Science.gov (United States)

Finnigan, J. J.

2009-04-01

In terrestrial plant canopies, turbulent exchange of water through evapotranspiration is intimately bound up with exchange of other scalars, heat and carbon dioxide in particular. Turbulent transport is rarely the process limiting exchange of these scalars between the biosphere and the atmosphere. However, in measurement programs like FLUXNET or when we parameterise surface exchange at the canopy scale in climate or weather models we must understand the mechanism of turbulent exchange in detail. In this talk we survey four current obstacles to extending our understanding of canopy turbulence from the idealised case of homogeneous flow in neutral stratification to complex flows in stable and unstable conditions. 1. Canopy eddy structure and the hydrodynamic instability Recent analysis of canopy LES and wind tunnel simulations has revealed the ‘two hairpin' structure of a characteristic canopy eddy. This structure explains a large body of results from a wide range of canopies and redefines the Roughness Sub Layer (RSL) as an asymptotic layer similar to the logarithmic and outer layers of the Planetary Boundary Layer. However, the nature of the non-linear ‘mixing-layer' instability process that gives canopy/RSL eddies their coherence and enhanced transport efficiency (as compared to eddies in the logarithmic layer above) is poorly understood so we do not know how resilient this instability and the eddies that depend upon it are to large scale flow perturbations or to changes in stability. 2. Turbulent Schmidt and Prandtl Numbers The scalar RSL can be defined as the layer across which the turbulent Schmidt (Sc) and Prandtl (Pr) numbers in neutral stratification change from their canopy top values of ~0.5, typical of mixing layers, to their logarithmic layer values of ~1.0, typical of boundary layers. The value of Sc or Pr is a critical parameter when adjusting Monin-Obukhov similarity theory (MOST) for the proximity of the canopy. The need for such adjustments has

Remote measurement of canopy reflectance shows the effects of elevated carbon dioxide and ozone on the structure and functioning of soybeans in a field setting.

Science.gov (United States)

Gray, S.; Dermody, O.; Delucia, E.

2006-12-01

By altering physiological processes and modifying canopy structure, elevated atmospheric CO2 and O3 directly and indirectly change the productivity of agroecosystems. Remote sensing of canopy reflectance can be used to monitor physiological and structural changes in an ecosystem over a growing season. To examine effects of changing tropospheric chemistry on water content, chlorophyll content, and changes in leaf area index (LAI), Free-Air Concentration Enrichment (FACE) technology was used to expose large plots of soybean (Glycine max) to elevated atmospheric CO2, elevated O3 (1.5 x ambient), and combined elevated CO2 and O3. The following indices were calculated from weekly measurements of reflectance: water index (WI), photochemical reflectance index (PRI), chlorophyll index, near-infrared/ red (NIR/red), and normalized difference vegetation index (NDVI). NIR/red and LAI were strongly correlated throughout the growth season; however NDVI and LAI were highly correlated only up to LAI of 3. Exposure to elevated CO2 accelerated early-season canopy development and delayed late-season senescence. Growth in elevated O3 had the opposite effect. Additionally, elevated CO2 compensated for negative effects of O3 when the canopy was exposed to both gases simultaneously. Reflectance indices revealed several physiological and structural responses of this agroecosystem to tropospheric change, and ultimately that elevated CO2 and O3 significantly affected this system's productivity and period for carbon gain.

Canopy structure and physiology related to rootstock vigour in early-ripening peach cultivar Flordastar

International Nuclear Information System (INIS)

Motisi, A.; Grutta, I.; Pernice, F.; Caruso, T.

2005-01-01

Canopy architectural and eco-physiological traits were measured on five-year-old early-ripening peach cv Flordastar trees grafted on GF 677 and MrS 2/5 rootstocks. Data are reported both on measurements performed directly on the trees, for branches and twigs characters, and on the fractal dimension (D), estimated by the 'box counting' method taken from digital images of Winter-dormant trees, adopted as an indicator of canopy complexity. Results are discussed in relation to the modification of the canopy microclimate as a consequence of the effects of rootstock on tree architecture and water consumption, the latter measured by using sap flow (HPV) probes. A lower degree of canopy complexity was observed in trees grafted onto MrS 2/5 and this, in turn, was related to a higher degree of aerodynamic contact of the tree with the atmosphere (expressed in terms of leaf boundary conductance) and to a higher solar radiation intensity along the canopy profile. These differences did not affect fruit quality in terms of size, red skin over-colour and soluble solid content. In MrS 2/5, the higher light availability at all levels along canopy profile was related to a moderate water deficit status, even under full-irrigation conditions, as evidenced by the lower stem water potential (below -1.3 MPa) and by a lower transpiration rate (about one-half of the values observed on GF 677). At tree-level, MrS 2/5 had a daily water consumption that, also in relation to the lower leaf area per tree, resulted as low as 25% of the values observed on GF 677. The latter, even carrying a significantly higher leaf area and higher water consumption, never showed apparent symptoms of water deficit [it

Sistema de integração lavoura-pecuária: efeito do manejo da altura em pastagem de aveia preta e azevém anual sobre o rendimento da cultura da soja Crop-livestock integration system: effect of oat and italian ryegrass sward height management on soybean yield

Directory of Open Access Journals (Sweden)

Marília Lazzarotto Terra Lopes

2009-08-01

Full Text Available O objetivo deste trabalho foi avaliar os efeitos da altura de manejo em pastagem de aveia preta e azevém anual sobre o estabelecimento e o rendimento de grãos da cultura de soja. Os tratamentos utilizados foram quatro alturas de manejo do pasto: 10, 20, 30 e 40cm e um tratamento sem pastejo. Foram avaliados atributos referentes à pastagem (altura do pasto, oferta de forragem, massa de forragem, taxa de acúmulo, taxa de lotação animal e palhada residual e à cultura da soja (estande inicial de plantas e rendimento de grãos. As alturas reais do pasto ficaram próximas daquelas pretendidas, havendo um aumento linear da oferta de forragem e da massa de forragem quando foi observado aumento das alturas de manejo do pasto. A taxa de acúmulo não foi afetada pelos tratamentos. A taxa de lotação apresentou resposta linear decrescente com o aumento da altura do pasto. A massa de forragem remanescente aumentou na medida em que houve incremento na altura de manejo do pasto. Foi observada diferença entre os tratamentos para palhada residual e estande inicial de plantas de soja, porém essas diferenças não afetaram o rendimento de grãos da cultura. Os resultados sugerem que a presença dos animais não prejudica o cultivo subsequente, possibilitando aumento da renda do produtor pela oportunidade de utilização das áreas durante a entressafra da soja.This trial aimed to evaluate the effects of sward height management of pastures composed by black oat and Italian ryegrass upon soybean establishment and yield. The treatments were four sward management heights: 10, 20, 30 and 40cm; and no grazing control. Pasture (sward height, herbage allowance, herbage mass, stocking rate and post grazing herbage mass and soybean (initial stand of plants and yield attributes were evaluated. The observed sward heights were very similar to those previously intended. There was a linear increase in herbage allowance and herbage mass with increasing sward height

Canopy Dynamics in Nanoscale Ionic Materials Probed by NMR

Science.gov (United States)

Mirau, Peter

2013-03-01

Nanoscale ionic materials (NIMs) are hybrids prepared from ionically functionalized nanoparticles (NP) neutralized by oligomeric polymer counter-ions. NIMs are designed to behave as liquids under ambient conditions in the absence of solvent and have no volatile organic content, making them useful for a number of applications. We have used NMR relaxation and pulse-field gradient NMR to probe local and collective canopy dynamics in NIMs based on silica nanoparticles (NP), fullerols and proteins in order to understand the relationship between the core and canopy structure and the bulk properties. The NMR studies show that the canopy dynamics depend on the degree of neutralization, the canopy radius of gyration and molecular crowding at the ionically modified NP surface. The viscosity in NIMs can be directly controlled with the addition of ions that enhance the exchange rate for polymers at the NP surface. These results show that NIMs for many applications can be prepared by controlling the dynamics of the NP interface.

Worldwide variation in within-canopy photosynthetic acclimation: differences in temporal and environmental controls among plant functional types

Science.gov (United States)

Niinemets, Ülo; Keenan, Trevor

2017-04-01

Major light gradients, characteristically 10- to 50-fold, constitute the most prominent feature of plant canopies. These gradients drive within-canopy variation in foliage structural, chemical and physiological traits. As a key acclimation response to variation in light availability, foliage photosynthetic capacity per area (Aarea) increases with increasing light availability within the canopy, maximizing whole canopy photosynthesis. Recently, a worldwide database including 831 within-canopy gradients with standardized light estimates for 304 species belonging to major vascular plant functional types was constructed and within-canopy variation in photosynthetic acclimation was characterized (Niinemets Ü, Keenan TF, Hallik L (2015) Tansley review. A worldwide analysis of within-canopy variations in leaf structural, chemical and physiological traits across plant functional types. The New Phytologist 205: 973-993). However, the understanding of how within-canopy photosynthetic gradients vary during the growing season and in response to site and stand characteristics is still limited. Here we analyzed temporal, environmental and site (nutrient availability, stand density, ambient CO2 concentration, water availability) sources of variation in within-canopy photosynthetic acclimation in different plant functional types. Variation in key structural (leaf dry mass per unit area, MA), chemical (nitrogen content per dry mass, NM, and area, NA) and physiological (photosynthetic nitrogen use efficiency, EN) photosynthetic capacity per dry mass, Amass and area, Aarea) was examined. The analysis demonstrates major, typically 1.5-2-fold, time-, environment and site-dependent modifications in within-canopy variation in foliage photosynthetic capacity. However, the magnitude and direction of temporal and environmental variations in plasticity significantly varied among functional types. Species with longer leaf life span and low rates of canopy expansion or flush-type canopy

The impact of modifying antenna size of photosystem II on canopy photosynthetic efficiency – development of a new canopy photosynthesis model scaling from metabolism to canopy level processes

Science.gov (United States)

Canopy photosynthesis describes photosynthesis of an entire crop field and positively correlates with biomass production. Much effort in crop breeding has focused on improving canopy architecture and hence light distribution inside the canopy. Here, we develop a new integrated canopy photosynthesis ...

Characterization and classification of vegetation canopy structure and distribution within the Great Smoky Mountains National Park using LiDAR

Science.gov (United States)

Jitendra Kumar; Jon Weiner; William W. Hargrove; Steve Norman; Forrest M. Hoffman; Doug Newcomb

2016-01-01

Vegetation canopy structure is a critically important habitat characteristic for many threatened and endangered birds and other animal species, and it is key information needed by forest and wildlife managers for monitoring and managing forest resources, conservation planning and fostering biodiversity. Advances in Light Detection and Ranging (LiDAR) technologies have...

Modeling cotton (Gossypium spp) leaves and canopy using computer aided geometric design (CAGD)

Science.gov (United States)

The goal of this research is to develop a geometrically accurate model of cotton crop canopies for exploring changes in canopy microenvironment and physiological function with leaf structure. We develop an accurate representation of the leaves, including changes in three-dimensional folding and orie...

Canopy Dynamics in Nanoscale Ionic Materials

KAUST Repository

Jespersen, Michael L.

2010-07-27

Nanoscale ionic materials (NIMS) are organic - inorganic hybrids in which a core nanostructure is functionalized with a covalently attached corona and an ionically tethered organic canopy. NIMS are engineered to be liquids under ambient conditions in the absence of solvent and are of interest for a variety of applications. We have used nuclear magnetic resonance (NMR) relaxation and pulse-field gradient (PFG) diffusion experiments to measure the canopy dynamics of NIMS prepared from 18-nm silica cores modified by an alkylsilane monolayer possessing terminal sulfonic acid functionality, paired with an amine-terminated ethylene oxide/propylene oxide block copolymer canopy. Carbon NMR studies show that the block copolymer canopy is mobile both in the bulk and in the NIMS and that the fast (ns) dynamics are insensitive to the presence of the silica nanoparticles. Canopy diffusion in the NIMS is slowed relative to the neat canopy, but not to the degree predicted from the diffusion of hard-sphere particles. Canopy diffusion is not restricted to the surface of the nanoparticles and shows unexpected behavior upon addition of excess canopy. Taken together, these data indicate that the liquid-like behavior in NIMS is due to rapid exchange of the block copolymer canopy between the ionically modified nanoparticles. © 2010 American Chemical Society.

Canopy Dynamics in Nanoscale Ionic Materials

KAUST Repository

Jespersen, Michael L.; Mirau, Peter A.; Meerwall, Ernst von; Vaia, Richard A.; Rodriguez, Robert; Giannelis, Emmanuel P.

2010-01-01

Nanoscale ionic materials (NIMS) are organic - inorganic hybrids in which a core nanostructure is functionalized with a covalently attached corona and an ionically tethered organic canopy. NIMS are engineered to be liquids under ambient conditions in the absence of solvent and are of interest for a variety of applications. We have used nuclear magnetic resonance (NMR) relaxation and pulse-field gradient (PFG) diffusion experiments to measure the canopy dynamics of NIMS prepared from 18-nm silica cores modified by an alkylsilane monolayer possessing terminal sulfonic acid functionality, paired with an amine-terminated ethylene oxide/propylene oxide block copolymer canopy. Carbon NMR studies show that the block copolymer canopy is mobile both in the bulk and in the NIMS and that the fast (ns) dynamics are insensitive to the presence of the silica nanoparticles. Canopy diffusion in the NIMS is slowed relative to the neat canopy, but not to the degree predicted from the diffusion of hard-sphere particles. Canopy diffusion is not restricted to the surface of the nanoparticles and shows unexpected behavior upon addition of excess canopy. Taken together, these data indicate that the liquid-like behavior in NIMS is due to rapid exchange of the block copolymer canopy between the ionically modified nanoparticles. © 2010 American Chemical Society.

Species Diversity Effects on Productivity, Persistence and Quality of Multispecies Swards in a Four-Year Experiment

DEFF Research Database (Denmark)

Jing, Jingying; Søegaard, Karen; Cong, Wen-Feng

2017-01-01

), neutral detergent fiber (NDF) and crude protein (CP), and a lower concentration of ash than the 10-mix and 12-mix. Slurry application increased annual yield production by 10% and changed the botanical composition, increasing the proportion of grass and decreasing the proportion of legumes. Compared......Plant species diversity may benefit natural grassland productivity, but its effect in managed grassland systems is not well understood. A four-year multispecies grassland experiment was conducted to investigate the effect of species diversity±legumes and non-leguminous forbs±on productivity...... increased sward production and yield persistence under cutting regime. The 12-mix had the highest yield from the second year onwards and no statistically significant yield reduction over four years, while annual yields in the 3-mix and 10-mix decreased significantly with increasing grassland age. The higher...

Effect of canopy architectural variation on transpiration and thermoregulation

Science.gov (United States)

Linn, R.; Banerjee, T.

2017-12-01

One of the major scientific questions identified by the NGEE - Tropics campaign is the effect of disturbances such as forest fires, vegetation thinning and land use change on carbon, water and energy fluxes. Answers to such questions can help develop effective forest management strategies and shape policies to mitigate damages under natural and anthropogenic climate change. The absence of horizontal and vertical variation of forest canopy structure in current models is a major source of uncertainty in answering these questions. The current work addresses this issue through a bottom up process based modeling approach to systematically investigate the effect of forest canopy architectural variation on plant physiological response as well as canopy level fluxes. A plant biophysics formulation is used which is based on the following principles: (1) a model for the biochemical demand for CO2 as prescribed by photosynthesis models. This model can differentiate between photosynthesis under light-limited and nutrient-limited scenarios. (2) A Fickian mass transfer model including transfer through the laminar boundary layer on leaves that may be subjected to forced or free convection depending upon the mean velocity and the radiation load; (3) an optimal leaf water use strategy that maximizes net carbon gain for a given transpiration rate to describe the stomatal aperture variation; (4) a leaf-level energy balance to accommodate evaporative cooling. Such leaf level processes are coupled to solutions of atmospheric flow through vegetation canopies. In the first test case, different scenarios of top heavy and bottom heavy (vertical) foliage distributions are investigated within a one-dimensional framework where no horizontal heterogeneity of canopy structure is considered. In another test case, different spatial distributions (both horizontal and vertical) of canopy geometry (land use) are considered, where flow solutions using large eddy simulations (LES) are coupled to the

Fire frequency and tree canopy structure influence plant species diversity in a forest-grassland ecotone

Science.gov (United States)

David W. Peterson; Peter B. Reich

2008-01-01

Disturbances and environmental heterogeneity are two factors thought to influence plant species diversity, but their effects are still poorly understood in many ecosystems. We surveyed understory vegetation and measured tree canopy cover on permanent plots spanning an experimental fire frequency gradient to test fire frequency and tree canopy effects on plant species...

Canopy BRF simulation of forest with different crown shape and height in larger scale based on Radiosity method

Science.gov (United States)

Song, Jinling; Qu, Yonghua; Wang, Jindi; Wan, Huawei; Liu, Xiaoqing

2007-06-01

Radiosity method is based on the computer simulation of 3D real structures of vegetations, such as leaves, branches and stems, which are composed by many facets. Using this method we can simulate the canopy reflectance and its bidirectional distribution of the vegetation canopy in visible and NIR regions. But with vegetations are more complex, more facets to compose them, so large memory and lots of time to calculate view factors are required, which are the choke points of using Radiosity method to calculate canopy BRF of lager scale vegetation scenes. We derived a new method to solve the problem, and the main idea is to abstract vegetation crown shapes and to simplify their structures, which can lessen the number of facets. The facets are given optical properties according to the reflectance, transmission and absorption of the real structure canopy. Based on the above work, we can simulate the canopy BRF of the mix scenes with different species vegetation in the large scale. In this study, taking broadleaf trees as an example, based on their structure characteristics, we abstracted their crowns as ellipsoid shells, and simulated the canopy BRF in visible and NIR regions of the large scale scene with different crown shape and different height ellipsoids. Form this study, we can conclude: LAI, LAD the probability gap, the sunlit and shaded surfaces are more important parameter to simulate the simplified vegetation canopy BRF. And the Radiosity method can apply us canopy BRF data in any conditions for our research.

Canopy structure and tree condition of young, mature, and old-growth Douglas-fir/hardwood forests

Science.gov (United States)

B.B. Bingham; J.O. Sawyer

1992-01-01

Sixty-two Douglas-fir/hardwood stands ranging from 40 to 560 years old were used to characterize the density; diameter, and height class distributions of canopy hardwoods and conifers in young (40 -100 yr), mature (101 - 200 yr) and old-growth (>200 yr) forests. The crown, bole, disease, disturbance, and cavity conditions of canopy conifers and hardwoods were...

Transmittance of young Norway spruce stand canopy for photosynthetically active radiation during the growing season

International Nuclear Information System (INIS)

Markova, I.; Kubasek, J.

2013-01-01

Analysis of transmittance of young Norway spruce stand canopy for photosynthetically active radiation (PAR) was made at the study site of Bily Kriz (the Moravian-Silesian Beskids Mts., the Czech Republic) at different sky conditions during the growing season in 2010. For the description of PAR transmittance different phenological phases of the spruce stand development in clear and overcast days were chosen. The mean daily PAR transmittance of the spruce canopy was significantly higher in overcast days compared with clear ones. Diffuse PAR thus penetrated into lower parts of the canopy more efficiently than direct one. PAR transmittance of young Norway spruce stand canopy was different in individual phenological phases of the spruce stand canopy which was caused by changes in the stand structure during the growing season. Thus monitoring of transmittance of young Norway spruce stand canopy for PAR can help to describe the development of spruce stand canopy

UPSCALING OF SOLAR INDUCED CHLOROPHYLL FLUORESCENCE FROM LEAF TO CANOPY USING THE DART MODEL AND A REALISTIC 3D FOREST SCENE

Directory of Open Access Journals (Sweden)

W. Liu

2017-10-01

Full Text Available Solar induced chlorophyll a fluorescence (SIF has been shown to be an excellent proxy of photosynthesis at multiple scales. However, the mechanical linkages between fluorescence and photosynthesis at the leaf level cannot be directly applied at canopy or field scales, as the larger scale SIF emission depends on canopy structure. This is especially true for the forest canopies characterized by high horizontal and vertical heterogeneity. While most of the current studies on SIF radiative transfer in plant canopies are based on the assumption of a homogeneous canopy, recently codes have been developed capable of simulation of fluorescence signal in explicit 3-D forest canopies. Here we present a canopy SIF upscaling method consisting of the integration of the 3-D radiative transfer model DART and a 3-D object model BLENDER. Our aim was to better understand the effect of boreal forest canopy structure on SIF for a spatially explicit forest canopy.

Canopy-forming seaweeds in urchin-dominated systems in eastern Canada: structuring forces or simple prey for keystone grazers?

Directory of Open Access Journals (Sweden)

Caitlin Blain

Full Text Available Models of benthic community dynamics for the extensively studied, shallow rocky ecosystems in eastern Canada emphasize kelp-urchin interactions. These models may bias the perception of factors and processes that structure communities, for they largely overlook the possible contribution of other seaweeds to ecosystem resilience. We examined the persistence of the annual, acidic (H2SO4, brown seaweed Desmarestia viridis in urchin barrens at two sites in Newfoundland (Canada throughout an entire growth season (February to October. We also compared changes in epifaunal assemblages in D. viridis and other conspicuous canopy-forming seaweeds, the non-acidic conspecific Desmarestia aculeata and kelp Agarum clathratum. We show that D. viridis can form large canopies within the 2-to-8 m depth range that represent a transient community state termed "Desmarestia bed". The annual resurgence of Desmarestia beds and continuous occurrence of D. aculeata and A. clathratum, create biological structure for major recruitment pulses in invertebrate and fish assemblages (e.g. from quasi-absent gastropods to >150,000 recruits kg(-1 D. viridis. Many of these pulses phase with temperature-driven mass release of acid to the environment and die-off in D. viridis. We demonstrate experimentally that the chemical makeup of D. viridis and A. clathratum helps retard urchin grazing compared to D. aculeata and the highly consumed kelp Alaria esculenta. In light of our findings and related studies, we propose fundamental changes to the study of community shifts in shallow, rocky ecosystems in eastern Canada. In particular, we advocate the need to regard certain canopy-forming seaweeds as structuring forces interfering with top-down processes, rather than simple prey for keystone grazers. We also propose a novel, empirical model of ecological interactions for D. viridis. Overall, our study underscores the importance of studying organisms together with cross-scale environmental

The variation of apparent crown size and canopy heterogeneity across lowland Amazonian forests

OpenAIRE

Barbier, N.; Couteron, Pierre; Proisy, Christophe; Malhi, Y.; Gastellu-Etchegorry, J. P.

2010-01-01

Aim The size structure of a forest canopy is an important descriptor of the forest environment that may yield information on forest biomass and ecology. However, its variability at regional scales is poorly described or understood because of the still prohibitive cost of very high-resolution imagery as well as the lack of an appropriate methodology. We here employ a novel approach to describe and map the canopy structure of tropical forests. Location Amazonia. Methods We apply Fourier transfo...

Characterization of the horizontal structure of the tropical forest canopy using object-based LiDAR and multispectral image analysis

Science.gov (United States)

Dupuy, Stéphane; Lainé, Gérard; Tassin, Jacques; Sarrailh, Jean-Michel

2013-12-01

This article's goal is to explore the benefits of using Digital Surface Model (DSM) and Digital Terrain Model (DTM) derived from LiDAR acquisitions for characterizing the horizontal structure of different facies in forested areas (primary forests vs. secondary forests) within the framework of an object-oriented classification. The area under study is the island of Mayotte in the western Indian Ocean. The LiDAR data were the data originally acquired by an airborne small-footprint discrete-return LiDAR for the "Litto3D" coastline mapping project. They were used to create a Digital Elevation Model (DEM) at a spatial resolution of 1 m and a Digital Canopy Model (DCM) using median filtering. The use of two successive segmentations at different scales allowed us to adjust the segmentation parameters to the local structure of the landscape and of the cover. Working in object-oriented mode with LiDAR allowed us to discriminate six vegetation classes based on canopy height and horizontal heterogeneity. This heterogeneity was assessed using a texture index calculated from the height-transition co-occurrence matrix. Overall accuracy exceeds 90%. The resulting product is the first vegetation map of Mayotte which emphasizes the structure over the composition.

Ecophysiological Remote Sensing of Leaf-Canopy Photosynthetic Characteristics in a Cool-Temperate Deciduous Forest in Japan

Science.gov (United States)

Noda, H. M.; Muraoka, H.

2014-12-01

Satellite remote sensing of structure and function of canopy is crucial to detect temporal and spatial distributions of forest ecosystems dynamics in changing environments. The spectral reflectance of the canopy is determined by optical properties (spectral reflectance and transmittance) of single leaves and their spatial arrangements in the canopy. The optical properties of leaves reflect their pigments contents and anatomical structures. Thus detailed information and understandings of the consequence between ecophysiological traits and optical properties from single leaf to canopy level are essential for remote sensing of canopy ecophysiology. To develop the ecophysiological remote sensing of forest canopy, we have been promoting multiple and cross-scale measurements in "Takayama site" belonging to AsiaFlux and JaLTER networks, located in a cool-temperate deciduous broadleaf forest on a mountainous landscape in Japan. In this forest, in situ measurement of canopy spectral reflectance has been conducted continuously by a spectroradiometer as part of the "Phenological Eyes Network (PEN)" since 2004. To analyze the canopy spectral reflectance from leaf ecophysiological viewpoints, leaf mass per area, nitrogen content, chlorophyll contents, photosynthetic capacities and the optical properties have been measured for dominant canopy tree species Quercus crispla and Betula ermanii throughout the seasons for multiple years.Photosynthetic capacity was largely correlated with chlorophyll contents throughout the growing season in both Q. crispla and B. ermanii. In these leaves, the reflectance at "red edge" (710 nm) changed by corresponding to the changes of chlorophyll contents throughout the seasons. Our canopy-level examination showed that vegetation indices obtained by red edge reflectance have linear relationship with leaf chlorophyll contents and photosynthetic capacity. Finally we apply this knowledge to the Rapid Eye satellite imagery around Takayama site to scale

Heat and mass exchange within the soil - plant canopy-atmosphere system : a theroretical approach and its validation

NARCIS (Netherlands)

El-Kilani, R.M.M.

1997-01-01

Heat, mass and momentum transfer between the canopy air layer and the layer of air above has a very intermittent nature. This intermittent nature is due to the passage at the canopy top of coherent structures which have a length scale at least as large as the canopy height. The periodic

Gradients in fracture force and grazing resistance across canopy layers in seven tropical grass species

NARCIS (Netherlands)

Jacobs, A.A.A.; Scheper, J.A.; Benvenutti, M.A.; Gordon, I.J.; Poppi, D.P.; Elgersma, A.

2013-01-01

In reproductive swards, stems can act as a barrier that affects the grazing behaviour of ruminant livestock. The barrier effect of stems is closely associated with both the force required to fracture the stems and the density of these stems (in combination, these make up grazing resistance), and

Direct and carryover effect of post-grazing sward height on total lactation dairy cow performance.

Science.gov (United States)

Ganche, E; Delaby, L; O'Donovan, M; Boland, T M; Kennedy, E

2013-08-01

Grazing pastures to low post-grazing sward heights (PGSH) is a strategy to maximise the quantity of grazed grass in the diet of dairy cows within temperate grass-based systems. Within Irish spring-calving systems, it was hypothesised that grazing swards to very low PGSH would increase herbage availability during early lactation but would reduce dairy cow performance, the effect of which would persist in subsequent lactation performance when compared with cows grazing to a higher PGSH. Seventy-two Holstein-Friesian dairy cows (mean calving date, 12 February) were randomly assigned post-calving across two PGSH treatments (n = 36): 2.7 cm (severe; S1) and 3.5 cm (moderate; M1), which were applied from 10 February to 18 April (period 1; P1). This was followed by a carryover period (period 2; P2) during which cows were randomly reassigned within their P1 treatment across two further PGSH (n = 18): 3.5 cm (severe, SS and MS) and 4.5 cm (moderate, SM and MM) until 30 October. Decreasing PGSH from 3.5 to 2.7 cm significantly decreased milk (-2.3 kg/cow per day), protein (-95 g/day), fat (-143 g/day) and lactose (-109 g/day) yields, milk protein (-1.2 g/kg) and fat (-2.2 g/kg) concentrations and grass dry matter intake (GDMI; -1.7 kg dry matter/cow per day). The severe PGSH was associated with a lower bodyweight (BW) at the end of P1. There was no carryover effect of P1 PGSH on subsequent milk or milk solids yields in P2, but PGSH had a significant carryover effect on milk fat and lactose concentrations. Animals severely restricted at pasture in early spring had a higher BW and slightly higher body condition score in later lactation when compared with M1 animals. During P2, increasing PGSH from 3.5 to 4.5 cm increased milk and milk solids yield as a result of greater GDMI and resulted in higher mean BW and end BW. This study indicates that following a 10-week period of feed restriction, subsequent dairy cow cumulative milk production is unaffected. However, the substantial

Stochastic radiative transfer model for mixture of discontinuous vegetation canopies

International Nuclear Information System (INIS)

Shabanov, Nikolay V.; Huang, D.; Knjazikhin, Y.; Dickinson, R.E.; Myneni, Ranga B.

2007-01-01

Modeling of the radiation regime of a mixture of vegetation species is a fundamental problem of the Earth's land remote sensing and climate applications. The major existing approaches, including the linear mixture model and the turbid medium (TM) mixture radiative transfer model, provide only an approximate solution to this problem. In this study, we developed the stochastic mixture radiative transfer (SMRT) model, a mathematically exact tool to evaluate radiation regime in a natural canopy with spatially varying optical properties, that is, canopy, which exhibits a structured mixture of vegetation species and gaps. The model solves for the radiation quantities, direct input to the remote sensing/climate applications: mean radiation fluxes over whole mixture and over individual species. The canopy structure is parameterized in the SMRT model in terms of two stochastic moments: the probability of finding species and the conditional pair-correlation of species. The second moment is responsible for the 3D radiation effects, namely, radiation streaming through gaps without interaction with vegetation and variation of the radiation fluxes between different species. We performed analytical and numerical analysis of the radiation effects, simulated with the SMRT model for the three cases of canopy structure: (a) non-ordered mixture of species and gaps (TM); (b) ordered mixture of species without gaps; and (c) ordered mixture of species with gaps. The analysis indicates that the variation of radiation fluxes between different species is proportional to the variation of species optical properties (leaf albedo, density of foliage, etc.) Gaps introduce significant disturbance to the radiation regime in the canopy as their optical properties constitute major contrast to those of any vegetation species. The SMRT model resolves deficiencies of the major existing mixture models: ignorance of species radiation coupling via multiple scattering of photons (the linear mixture model

Estimating Canopy Dark Respiration for Crop Models

Science.gov (United States)

Monje Mejia, Oscar Alberto

2014-01-01

Crop production is obtained from accurate estimates of daily carbon gain.Canopy gross photosynthesis (Pgross) can be estimated from biochemical models of photosynthesis using sun and shaded leaf portions and the amount of intercepted photosyntheticallyactive radiation (PAR).In turn, canopy daily net carbon gain can be estimated from canopy daily gross photosynthesis when canopy dark respiration (Rd) is known.

Exploring the Vertical Distribution of Structural Parameters and Light Radiation in Rice Canopies by the Coupling Model and Remote Sensing

Directory of Open Access Journals (Sweden)

Yongjiu Guo

2015-04-01

Full Text Available Canopy structural parameters and light radiation are important for evaluating the light use efficiency and grain yield of crops. Their spatial variation within canopies and temporal variation over growth stages could be simulated using dynamic models with strong application and predictability. Based on an optimized canopy structure vertical distribution model and the Beer-Lambert law combined with hyperspectral remote sensing (RS technology, we established a new dynamic model for simulating leaf area index (LAI, leaf angle (LA distribution and light radiation at different vertical heights and growth stages. The model was validated by measuring LAI, LA and light radiation in different leaf layers at different growth stages of two different types of rice (Oryza sativa L., i.e., japonica (Wuxiangjing14 and indica (Shanyou63. The results show that the simulated values were in good agreement with the observed values, with an average RRMSE (relative root mean squared error between simulated and observed LAI and LA values of 14.75% and 21.78%, respectively. The RRMSE values for simulated photosynthetic active radiation (PAR transmittance and interception rates were 14.25% and 9.22% for Wuxiangjing14 and 15.71% and 4.40% for Shanyou63, respectively. In addition, the corresponding RRMSE values for red (R, green (G and blue (B radiation transmittance and interception rates were 16.34%, 15.96% and 15.36% for Wuxiangjing14 and 5.75%, 8.23% and 5.03% for Shanyou63, respectively. The results indicate that the model performed well for different rice cultivars and under different cultivation conditions.

Canopy transpiration for two Japanese cypress forests with contrasting structures

Science.gov (United States)

Tsuruta, K.; Komatsu, H.; Kume, T.; Shinohara, Y.; Otsuki, K.

2012-12-01

Canopy transpiration (EC) could have large variations among stands with different structures. To evaluate a difference in EC between stands with different structures for Japanese cypress, we observed EC using the sap flow technique in two stands with contrasting structures (age was 19 year and 99 year, mean diameter at breast height was 13.5 cm and 44.6 cm, stem density was 2100 trees ha-1 and 350 trees ha-1, respectively) for 5 months under the same meteorological condition. The mean stand sap flux density (JS) for measurement period and stand sapwood area (AS_stand) for the old stand (0.43 m3 m-2 day-1 and 15.2 m2 ha-1) were lower than those for the young stand (0.62 m3 m-2 day-1 and 20.4 m2 ha-1) by 31.1 % and 25.4 %, respectively. EC is calculated as a product of JS and AS_stand. Therefore the EC in the old stand was lower than that in the young stand by 50 %. We calculated the contribution of the reference JS for a given meteorological conditions (JSref) and the response of JS to the meteorological conditions (JSresp) in the two stands, and examined which is a primary factor for the difference of EC between the two studied stands. The JSresp for the young stand were not considerably different from that for the old stand, whereas JSref for the young stand was greater than that for the old stand. This indicates that JSref (not JSresp) was the primary cause for the difference of EC between the two stands. Further studies observing EC from stands with various structures are needed to generalize our conclusions.

Canopy arthropod responses to experimental canopy opening and debris deposition in a tropical rainforest subject to hurricanes

Science.gov (United States)

Timothy D. Schowalter; Michael R. Willig; Steven J. Presley

2014-01-01

We analyzed responses of canopy arthropods on seven representative early and late successional overstory and understory tree species to a canopy trimming experiment designed to separate effects of canopy opening and debris pulse (resulting from hurricane disturbance) in a tropical rainforest ecosystem at the Luquillo Experimental Forest Long-Term Ecological Research (...

The impact of modifying photosystem antenna size on canopy photosynthetic efficiency-Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes.

Science.gov (United States)

Song, Qingfeng; Wang, Yu; Qu, Mingnan; Ort, Donald R; Zhu, Xin-Guang

2017-12-01

Canopy photosynthesis (A c ) describes photosynthesis of an entire crop field and the daily and seasonal integrals of A c positively correlate with daily and seasonal biomass production. Much effort in crop breeding has focused on improving canopy architecture and hence light distribution inside the canopy. Here, we develop a new integrated canopy photosynthesis model including canopy architecture, a ray tracing algorithm, and C 3 photosynthetic metabolism to explore the option of manipulating leaf chlorophyll concentration ([Chl]) for greater A c and nitrogen use efficiency (NUE). Model simulation results show that (a) efficiency of photosystem II increased when [Chl] was decreased by decreasing antenna size and (b) the light received by leaves at the bottom layers increased when [Chl] throughout the canopy was decreased. Furthermore, the modelling revealed a modest ~3% increase in A c and an ~14% in NUE was accompanied when [Chl] reduced by 60%. However, if the leaf nitrogen conserved by this decrease in leaf [Chl] were to be optimally allocated to other components of photosynthesis, both A c and NUE can be increased by over 30%. Optimizing [Chl] coupled with strategic reinvestment of conserved nitrogen is shown to have the potential to support substantial increases in A c , biomass production, and crop yields. © 2017 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd.

A LIDAR-Based Tree Canopy Characterization under Simulated Uneven Road Condition: Advance in Tree Orchard Canopy Profile Measurement

Directory of Open Access Journals (Sweden)

Yue Shen

2017-01-01

Full Text Available In real outdoor canopy profile detection, the accuracy of a LIDAR scanner to measure canopy structure is affected by a potentially uneven road condition. The level of error associated with attitude angles from undulations in the ground surface can be reduced by developing appropriate correction algorithm. This paper proposes an offline attitude angle offset correction algorithm based on a 3D affine coordinate transformation. The validity of the correction algorithm is verified by conducting an indoor experiment. The experiment was conducted on an especially designed canopy profile measurement platform. During the experiment, an artificial tree and a tree-shaped carved board were continuously scanned at constant laser scanner travel speed and detection distances under simulated bumpy road conditions. Acquired LIDAR laser scanner raw data was processed offline by exceptionally developed MATLAB program. The obtained results before and after correction method show that the single attitude angle offset correction method is able to correct the distorted data points in tree-shaped carved board profile measurement, with a relative error of 5%, while the compound attitude angle offset correction method is effective to reduce the error associated with compound attitude angle deviation from the ideal scanner pose, with relative error of 7%.

Modelling canopy fuel and forest stand variables and characterizing the influence of thinning in the stand structure using airborne LiDAR

Directory of Open Access Journals (Sweden)

A. Hevia

2016-02-01

Full Text Available Forest fires are a major threat in NW Spain. The importance and frequency of these events in the area suggests the need for fuel management programs to reduce the spread and severity of forest fires. Thinning treatments can contribute for fire risk reduction, because they cut off the horizontal continuity of forest fuels. Besides, it is necessary to conduct a fire risk management based on the knowledge of fuel allocation, since fire behaviour and fire spread study is dependent on the spatial factor. Therefore, mapping fuel for different silvicultural scenarios is essential. Modelling forest variables and forest structure parameters from LiDAR technology is the starting point for developing spatially explicit maps. This is essential in the generation of fuel maps since field measurements of canopy fuel variables is not feasible. In the present study, we evaluated the potential of LiDAR technology to estimate canopy fuel variables and other stand variables, as well as to identify structural differences between silvicultural managed and unmanaged P. pinaster Ait. stands. Independent variables (LiDAR metrics of greater explanatory significance were identified and regression analyses indicated strong relationships between those and field-derived variables (R2 varied between 0.86 and 0.97. Significant differences were found in some LiDAR metrics when compared thinned and unthinned stands. Results showed that LiDAR technology allows to model canopy fuel and stand variables with high precision in this species, and provides useful information for identifying areas with and without silvicultural management.

AIRBORNE X-HH INCIDENCE ANGLE IMPACT ON CANOPY HEIGHT RETREIVAL: IMPLICATIONS FOR SPACEBORNE X-HH TANDEM-X GLOBAL CANOPY HEIGHT MODEL

Directory of Open Access Journals (Sweden)

M. L. Tighe

2012-07-01

Full Text Available To support international climate change mitigation efforts, the United Nations REDD+ initiative (Reducing Emissions from Deforestation and Degradation seeks to reduce land use induced greenhouse gas emissions to the atmosphere. It requires independent monitoring of forest cover and forest biomass information in a spatially explicit form. It is widely recognised that remote sensing is required to deliver this information. Synthetic Aperture Radar interferometry (InSAR techniques have gained traction in the last decade as a viable technology from which vegetation canopy height and bare earth elevations can be derived. The viewing geometry of a SAR sensor is side-looking where the radar pulse is transmitted out to one side of the aircraft or satellite, defining an incidence angle (θ range. The incidence angle will change from near-range (NR to far-range (FR across of the track of the SAR platform. InSAR uses image pairs and thus, contain two set of incidence angles. Changes in the InSAR incidence angles can alter the relative contributions from the vegetation canopy and the ground surface and thus, affect the retrieved vegetation canopy height. Incidence angle change is less pronounced in spaceborne data than in airborne data and mitigated somewhat when multiple InSAR-data takes are combined. This study uses NEXTMap® single- and multi-pass X-band HH polarized InSAR to derive vegetation canopy height from the scattering phase centre height (hspc. Comparisons with in situ vegetation canopy height over three test sites (Arizona-1, Minnesota-2; the effect of incidence angle changes across swath on the X-HH InSAR hspc was examined. Results indicate at steep incidence angles (θ = 35º, more exposure of lower vegetation canopy structure (e.g. tree trunks led to greater lower canopy double bounce, increased ground scattering, and decreased volume scattering. This resulted in a lower scattering phase centre height (hspc or a greater underestimation of

Canopy for VERAView Installation Guide

Energy Technology Data Exchange (ETDEWEB)

Lee, Ronald W. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

2016-09-12

With the addition of the 3D volume slicer widget, VERAView now relies on Mayavi and its dependents. Enthought's Canopy Python environment provides everything VERAView needs, and pre-built Canopy versions for Windows, Mac OSX, and Linux can be downloaded.

Plant photomorphogenesis and canopy growth

Science.gov (United States)

Ballare, Carlos L.; Scopel, Ana L.

1994-01-01

An important motivation for studying photomorphogenesis is to understand the relationships among plant photophysiology in canopies, canopy productivity, and agronomic yield. This understanding is essential to optimize lighting systems used for plant farming in controlled environments (CE) and for the design of genetically engineered crop strains with altered photoresponses. This article provides an overview of some basic principles of plant photomorphogenesis in canopies and discusses their implications for (1) scaling up information on plant photophysiology from individual plants in CE to whole canopies in the field, and (2) designing lighting conditions to increase plant productivity in CE used for agronomic purposes (e.g. space farming in CE Life Support Systems). We concentrate on the visible (lambda between 400 and 700 nm) and far-infrared (FR; lambda greater than 700 nm) spectral regions, since the ultraviolet (UV; 280 to 400 nm) is covered by other authors in this volume.

Plant photomorphogenesis and canopy growth

Energy Technology Data Exchange (ETDEWEB)

Ballare, C.L.; Scopel, A.L. [Universidad de Buenos Aires (Argentina)

1994-12-31

An important motivation for studying photomorphogenesis is to understand the relationships among plant photophysiology in canopies, canopy productivity, and agronomic yield. This understanding is essential to optimize lighting systems used for plant farming in controlled environments (CE) and for the design of genetically engineered crop strains with altered photoresponses. This article provides an overview of some basic principles of plant photomorphogenesis in canopies and discusses their implications for (1) scaling up information on plant photophysiology from individual plants in CE to whole canopies in the field, and (2), designing lighting conditions to increase plant productivity in CE used for agronomic purposes [e.g. space farming in CE Life-Support-Systems]. We concentrate on the visible ({lambda} between 400 and 700 nm) and far red (FR; {lambda} > 700 nm) spectral regions, since the ultraviolet (UV; 280 to 400 nm) is covered by other authors in this volume.

[The research on bidirectional reflectance computer simulation of forest canopy at pixel scale].

Science.gov (United States)

Song, Jin-Ling; Wang, Jin-Di; Shuai, Yan-Min; Xiao, Zhi-Qiang

2009-08-01

Computer simulation is based on computer graphics to generate the realistic 3D structure scene of vegetation, and to simulate the canopy regime using radiosity method. In the present paper, the authors expand the computer simulation model to simulate forest canopy bidirectional reflectance at pixel scale. But usually, the trees are complex structures, which are tall and have many branches. So there is almost a need for hundreds of thousands or even millions of facets to built up the realistic structure scene for the forest It is difficult for the radiosity method to compute so many facets. In order to make the radiosity method to simulate the forest scene at pixel scale, in the authors' research, the authors proposed one idea to simplify the structure of forest crowns, and abstract the crowns to ellipsoids. And based on the optical characteristics of the tree component and the characteristics of the internal energy transmission of photon in real crown, the authors valued the optical characteristics of ellipsoid surface facets. In the computer simulation of the forest, with the idea of geometrical optics model, the gap model is considered to get the forest canopy bidirectional reflectance at pixel scale. Comparing the computer simulation results with the GOMS model, and Multi-angle Imaging SpectroRadiometer (MISR) multi-angle remote sensing data, the simulation results are in agreement with the GOMS simulation result and MISR BRF. But there are also some problems to be solved. So the authors can conclude that the study has important value for the application of multi-angle remote sensing and the inversion of vegetation canopy structure parameters.

Impact of Canopy Coupling on Canopy Average Stomatal Conductance Across Seven Tree Species in Northern Wisconsin

Science.gov (United States)

Ewers, B. E.; Mackay, D. S.; Samanta, S.; Ahl, D. E.; Burrows, S. S.; Gower, S. T.

2001-12-01

Land use changes over the last century in northern Wisconsin have resulted in a heterogeneous landscape composed of the following four main forest types: northern hardwoods, northern conifer, aspen/fir, and forested wetland. Based on sap flux measurements, aspen/fir has twice the canopy transpiration of northern hardwoods. In addition, daily transpiration was only explained by daily average vapor pressure deficit across the cover types. The objective of this study was to determine if canopy average stomatal conductance could be used to explain the species effects on tree transpiration. Our first hypothesis is that across all of the species, stomatal conductance will respond to vapor pressure deficit so as to maintain a minimum leaf water potential to prevent catostrophic cavitiation. The consequence of this hypothesis is that among species and individuals there is a proportionality between high stomatal conductance and the sensitivity of stomatal conductance to vapor pressure deficit. Our second hypothesis is that species that do not follow the proportionality deviate because the canopies are decoupled from the atmosphere. To test our two hypotheses we calculated canopy average stomatal conductance from sap flux measurements using an inversion of the Penman-Monteith equation. We estimated the canopy coupling using a leaf energy budget model that requires leaf transpiration and canopy aerodynamic conductance. We optimized the parameters of the aerodynamic conductance model using a Monte Carlo technique across six parameters. We determined the optimal model for each species by selecting parameter sets that resulted in the proportionality of our first hypothesis. We then tested the optimal energy budget models of each species by comparing leaf temperature and leaf width predicted by the models to measurements of each tree species. In red pine, sugar maple, and trembling aspen trees under high canopy coupling conditions, we found the hypothesized proportionality

Linking terrace geomorphology and canopy characteristics in the Peruvian Amazon using high resolution airborne remote sensing (Invited)

Science.gov (United States)

Chadwick, K.; Asner, G. P.

2013-12-01

The Peruvian Amazon is home to over half a million square kilometers of forest, nearly three quarters of which is supported by terrace landforms with variable histories. Characteristics of these terrace ecosystems have been contrasted with neighboring floodplain systems along riverine transportation corridors, but the ecological complexity within these terrace landscapes has remained largely unexplored. Airborne remote measurements provide an opportunity to consider the relationship between forest canopy characteristics and geomorphic gradients at high resolution over large spatial extents. In 2011 the Carnegie Airborne Observatory (CAO) was used to map a large section of intact lowland humid tropical forest in the southwestern Peruvian Amazon, including over nine thousand hectares of terrace forest. The CAO collected high-fidelity imaging spectroscopy data with its Visible-Shortwave Imaging Spectrometer (VSWIR) and digital elevation and canopy structure data with its high-resolution dual waveform LiDAR. These data, supplemented with field data collection, were used to quantify relationships between forest canopy traits and geomorphic gradients. Results suggest that both spectral properties of the canopy with known relationships to canopy chemistry, including pigment and nutrient concentrations, and canopy structural traits, including vegetation height and leaf area, are associated with geomorphic characteristics of this terrace landscape.

Remote sensing of sagebrush canopy nitrogen

Science.gov (United States)

Mitchell, Jessica J.; Glenn, Nancy F.; Sankey, Temuulen T.; Derryberry, DeWayne R.; Germino, Matthew J.

2012-01-01

This paper presents a combination of techniques suitable for remotely sensing foliar Nitrogen (N) in semiarid shrublands – a capability that would significantly improve our limited understanding of vegetation functionality in dryland ecosystems. The ability to estimate foliar N distributions across arid and semi-arid environments could help answer process-driven questions related to topics such as controls on canopy photosynthesis, the influence of N on carbon cycling behavior, nutrient pulse dynamics, and post-fire recovery. Our study determined that further exploration into estimating sagebrush canopy N concentrations from an airborne platform is warranted, despite remote sensing challenges inherent to open canopy systems. Hyperspectral data transformed using standard derivative analysis were capable of quantifying sagebrush canopy N concentrations using partial least squares (PLS) regression with an R2 value of 0.72 and an R2 predicted value of 0.42 (n = 35). Subsetting the dataset to minimize the influence of bare ground (n = 19) increased R2 to 0.95 (R2 predicted = 0.56). Ground-based estimates of canopy N using leaf mass per unit area measurements (LMA) yielded consistently better model fits than ground-based estimates of canopy N using cover and height measurements. The LMA approach is likely a method that could be extended to other semiarid shrublands. Overall, the results of this study are encouraging for future landscape scale N estimates and represent an important step in addressing the confounding influence of bare ground, which we found to be a major influence on predictions of sagebrush canopy N from an airborne platform.

Impact of Vertical Canopy Position on Leaf Spectral Properties and Traits across Multiple Species

Directory of Open Access Journals (Sweden)

Tawanda W. Gara

2018-02-01

Full Text Available Understanding the vertical pattern of leaf traits across plant canopies provide critical information on plant physiology, ecosystem functioning and structure and vegetation response to climate change. However, the impact of vertical canopy position on leaf spectral properties and subsequently leaf traits across the entire spectrum for multiple species is poorly understood. In this study, we examined the ability of leaf optical properties to track variability in leaf traits across the vertical canopy profile using Partial Least Square Discriminatory Analysis (PLS-DA. Leaf spectral measurements together with leaf traits (nitrogen, carbon, chlorophyll, equivalent water thickness and specific leaf area were studied at three vertical canopy positions along the plant stem: lower, middle and upper. We observed that foliar nitrogen (N, chlorophyll (Cab, carbon (C, and equivalent water thickness (EWT were higher in the upper canopy leaves compared with lower shaded leaves, while specific leaf area (SLA increased from upper to lower canopy leaves. We found that leaf spectral reflectance significantly (P ≤ 0.05 shifted to longer wavelengths in the ‘red edge’ spectrum (685–701 nm in the order of lower > middle > upper for the pooled dataset. We report that spectral bands that are influential in the discrimination of leaf samples into the three groups of canopy position, based on the PLS-DA variable importance projection (VIP score, match with wavelength regions of foliar traits observed to vary across the canopy vertical profile. This observation demonstrated that both leaf traits and leaf reflectance co-vary across the vertical canopy profile in multiple species. We conclude that canopy vertical position has a significant impact on leaf spectral properties of an individual plant’s traits, and this finding holds for multiple species. These findings have important implications on field sampling protocols, upscaling leaf traits to canopy level

What is the most prominent factor limiting photosynthesis in different layers of a greenhouse cucumber canopy?

Science.gov (United States)

Chen, Tsu-Wei; Henke, Michael; de Visser, Pieter H B; Buck-Sorlin, Gerhard; Wiechers, Dirk; Kahlen, Katrin; Stützel, Hartmut

2014-09-01

Maximizing photosynthesis at the canopy level is important for enhancing crop yield, and this requires insights into the limiting factors of photosynthesis. Using greenhouse cucumber (Cucumis sativus) as an example, this study provides a novel approach to quantify different components of photosynthetic limitations at the leaf level and to upscale these limitations to different canopy layers and the whole plant. A static virtual three-dimensional canopy structure was constructed using digitized plant data in GroIMP. Light interception of the leaves was simulated by a ray-tracer and used to compute leaf photosynthesis. Different components of photosynthetic limitations, namely stomatal (S(L)), mesophyll (M(L)), biochemical (B(L)) and light (L(L)) limitations, were calculated by a quantitative limitation analysis of photosynthesis under different light regimes. In the virtual cucumber canopy, B(L) and L(L) were the most prominent factors limiting whole-plant photosynthesis. Diffusional limitations (S(L) + M(L)) contributed Photosynthesis in the lower canopy was more limited by the biochemical capacity, and the upper canopy was more sensitive to light than other canopy parts. Although leaves in the upper canopy received more light, their photosynthesis was more light restricted than in the leaves of the lower canopy, especially when the light condition above the canopy was poor. An increase in whole-plant photosynthesis under diffuse light did not result from an improvement of light use efficiency but from an increase in light interception. Diffuse light increased the photosynthesis of leaves that were directly shaded by other leaves in the canopy by up to 55%. Based on the results, maintaining biochemical capacity of the middle-lower canopy and increasing the leaf area of the upper canopy would be promising strategies to improve canopy photosynthesis in a high-wire cucumber cropping system. Further analyses using the approach described in this study can be expected to

Aboveground biomass mapping of African forest mosaics using canopy texture analysis: toward a regional approach.

Science.gov (United States)

Bastin, Jean-François; Barbier, Nicolas; Couteron, Pierre; Adams, Benoît; Shapiro, Aurélie; Bogaert, Jan; De Cannière, Charles

In the context of the reduction of greenhouse gas emissions caused by deforestation and forest degradation (the REDD+ program), optical very high resolution (VHR) satellite images provide an opportunity to characterize forest canopy structure and to quantify aboveground biomass (AGB) at less expense than methods based on airborne remote sensing data. Among the methods for processing these VHR images, Fourier textural ordination (FOTO) presents a good method to detect forest canopy structural heterogeneity and therefore to predict AGB variations. Notably, the method does not saturate at intermediate AGB values as do pixelwise processing of available space borne optical and radar signals. However, a regional-scale application requires overcoming two difficulties: (1) instrumental effects due to variations in sun–scene–sensor geometry or sensor-specific responses that preclude the use of wide arrays of images acquired under heterogeneous conditions and (2) forest structural diversity including monodominant or open canopy forests, which are of particular importance in Central Africa. In this study, we demonstrate the feasibility of a rigorous regional study of canopy texture by harmonizing FOTO indices of images acquired from two different sensors (Geoeye-1 and QuickBird-2) and different sun–scene–sensor geometries and by calibrating a piecewise biomass inversion model using 26 inventory plots (1 ha) sampled across very heterogeneous forest types. A good agreement was found between observed and predicted AGB (residual standard error [RSE] = 15%; R2 = 0.85; P biomass map (100-m pixels) was produced for a 400-km2 area, and predictions obtained from both imagery sources were consistent with each other (r = 0.86; slope = 1.03; intercept = 12.01 Mg/ha). These results highlight the horizontal structure of forest canopy as a powerful descriptor of the entire forest stand structure and heterogeneity. In particular, we show that quantitative metrics resulting from such

Compliance of secondary production and eco-exergy as indicators of benthic macroinvertebrates assemblages' response to canopy cover conditions in Neotropical headwater streams.

Science.gov (United States)

Linares, Marden Seabra; Callisto, Marcos; Marques, João Carlos

2018-02-01

Riparian vegetation cover influences benthic assemblages structure and functioning in headwater streams, as it regulates light availability and autochthonous primary production in these ecosystems.Secondary production, diversity, and exergy-based indicators were applied in capturing how riparian cover influences the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams. Four hypotheses were tested: (1) open canopy will determine the occurrence of higher diversity in benthic macroinvertebrate assemblages; (2) streams with open canopy will exhibit more complex benthic macroinvertebrate communities (in terms of information embedded in the organisms' biomass); (3) in streams with open canopy benthic macroinvertebrate assemblages will be more efficient in using the available resources to build structure, which will be reflected by higher eco-exergy values; (4) benthic assemblages in streams with open canopy will exhibit more secondary productivity. We selected eight non-impacted headwater streams, four shaded and four with open canopy, all located in the Neotropical savannah (Cerrado) of southeastern Brazil. Open canopy streams consistently exhibited significantly higher eco-exergy and instant secondary production values, exemplifying that these streams may support more complex and productive benthic macroinvertebrate assemblages. Nevertheless, diversity indices and specific eco-exergy were not significantly different in shaded and open canopy streams. Since all the studied streams were selected for being considered as non-impacted, this suggests that the potential represented by more available food resources was not used to build a more complex dissipative structure. These results illustrate the role and importance of the canopy cover characteristics on the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams, while autochthonous production appears to play a crucial role as food

Effect of canopy structures and their steric interactions on CO2 sorption behavior of liquid-like nanoparticle organic hybrid materials

KAUST Repository

Park, Youngjune; Petit, Camille; Han, Patrick; Alissa Park, Ah-Hyung

2014-01-01

Liquid-like NOHMs with different grafting densities of polymeric canopy were synthesized to evaluate their solvating properties as CO2 solvents. The in situ ATR FT-IR study of NOHMs with linear and branched canopies revealed distinct CO2 capture and corresponding swelling behaviors. These observations suggested that the entropic contribution for CO2 sorption in NOHMs can be tuned via the canopy design. © The Royal Society of Chemistry.

Bone Canopies in Pediatric Renal Osteodystrophy

DEFF Research Database (Denmark)

Pereira, Renata C; Levin Andersen, Thomas; Friedman, Peter A

2016-01-01

Pediatric renal osteodystrophy (ROD) is characterized by changes in bone turnover, mineralization, and volume that are brought about by alterations in bone resorption and formation. The resorptive and formative surfaces on the cancellous bone are separated from the marrow cavity by canopies...... and their association with biochemical and bone histomorphometric parameters in 106 pediatric chronic kidney disease (CKD) patients (stage 2-5) across the spectrum of ROD. Canopies in CKD patients often appeared as thickened multilayered canopies, similar to previous reports in patients with primary hyperparathyroidism....... This finding contrasts with the thin appearance reported in healthy individuals with normal kidney function. Furthermore, canopies in pediatric CKD patients showed immunoreactivity to the PTH receptor (PTHR1) as well as to the receptor activator of nuclear factor kappa-B ligand (RANKL). The number of surfaces...

Stomatal Conductance, Plant Hydraulics, and Multilayer Canopies: A New Paradigm for Earth System Models or Unnecessary Uncertainty

Science.gov (United States)

Bonan, G. B.

2016-12-01

Soil moisture stress is a key regulator of canopy transpiration, the surface energy budget, and land-atmosphere coupling. Many land surface models used in Earth system models have an ad-hoc parameterization of soil moisture stress that decreases stomatal conductance with soil drying. Parameterization of soil moisture stress from more fundamental principles of plant hydrodynamics is a key research frontier for land surface models. While the biophysical and physiological foundations of such parameterizations are well-known, their best implementation in land surface models is less clear. Land surface models utilize a big-leaf canopy parameterization (or two big-leaves to represent the sunlit and shaded canopy) without vertical gradients in the canopy. However, there are strong biometeorological and physiological gradients in plant canopies. Are these gradients necessary to resolve? Here, I describe a vertically-resolved, multilayer canopy model that calculates leaf temperature and energy fluxes, photosynthesis, stomatal conductance, and leaf water potential at each level in the canopy. In this model, midday leaf water stress manifests in the upper canopy layers, which receive high amounts of solar radiation, have high leaf nitrogen and photosynthetic capacity, and have high stomatal conductance and transpiration rates (in the absence of leaf water stress). Lower levels in the canopy become water stressed in response to longer-term soil moisture drying. I examine the role of vertical gradients in the canopy microclimate (solar radiation, air temperature, vapor pressure, wind speed), structure (leaf area density), and physiology (leaf nitrogen, photosynthetic capacity, stomatal conductance) in determining above canopy fluxes and gradients of transpiration and leaf water potential within the canopy.

Algorithm for retrieving vegetative canopy and leaf parameters from multi- and hyperspectral imagery

Science.gov (United States)

Borel, Christoph

2009-05-01

In recent years hyper-spectral data has been used to retrieve information about vegetative canopies such as leaf area index and canopy water content. For the environmental scientist these two parameters are valuable, but there is potentially more information to be gained as high spatial resolution data becomes available. We developed an Amoeba (Nelder-Mead or Simplex) based program to invert a vegetative canopy radiosity model coupled with a leaf (PROSPECT5) reflectance model and modeled for the background reflectance (e.g. soil, water, leaf litter) to a measured reflectance spectrum. The PROSPECT5 leaf model has five parameters: leaf structure parameter Nstru, chlorophyll a+b concentration Cab, carotenoids content Car, equivalent water thickness Cw and dry matter content Cm. The canopy model has two parameters: total leaf area index (LAI) and number of layers. The background reflectance model is either a single reflectance spectrum from a spectral library() derived from a bare area pixel on an image or a linear mixture of soil spectra. We summarize the radiosity model of a layered canopy and give references to the leaf/needle models. The method is then tested on simulated and measured data. We investigate the uniqueness, limitations and accuracy of the retrieved parameters on canopy parameters (low, medium and high leaf area index) spectral resolution (32 to 211 band hyperspectral), sensor noise and initial conditions.

Fluxes of trichloroacetic acid through a conifer forest canopy

International Nuclear Information System (INIS)

Stidson, R.T.; Heal, K.V.; Dickey, C.A.; Cape, J.N.; Heal, M.R.

2004-01-01

Controlled-dosing experiments with conifer seedlings have demonstrated an above-ground route of uptake for trichloroacetic acid (TCA) from aqueous solution into the canopy, in addition to uptake from the soil. The aim of this work was to investigate the loss of TCA to the canopy in a mature conifer forest exposed only to environmental concentrations of TCA by analysing above- and below-canopy fluxes of TCA and within-canopy instantaneous reservoir of TCA. Concentrations and fluxes of TCA were quantified for one year in dry deposition, rainwater, cloudwater, throughfall, stemflow and litterfall in a 37-year-old Sitka spruce and larch plantation in SW Scotland. Above-canopy TCA deposition was dominated by rainfall (86%), compared with cloudwater (13%) and dry deposition (1%). On average only 66% of the TCA deposition passed through the canopy in throughfall and stemflow (95% and 5%, respectively), compared with 47% of the wet precipitation depth. Consequently, throughfall concentration of TCA was, on average, ∼1.4 x rainwater concentration. There was no significant difference in below-canopy fluxes between Sitka spruce and larch, or at a forest-edge site. Annual TCA deposited from the canopy in litterfall was only ∼1-2% of above-canopy deposition. On average, ∼800 μg m -2 of deposited TCA was lost to the canopy per year, compared with estimates of above-ground TCA storage of ∼400 and ∼300 μg m -2 for Sitka spruce and larch, respectively. Taking into account likely uncertainties in these values (∼±50%), these data yield an estimate for the half-life of within-canopy elimination of TCA in the range 50-200 days, assuming steady-state conditions and that all TCA lost to the canopy is transferred into the canopy material, rather than degraded externally. The observations provide strong indication that an above-ground route is important for uptake of TCA specifically of atmospheric origin into mature forest canopies, as has been shown for seedlings (in

Gainesville's urban forest canopy cover

Science.gov (United States)

Francisco Escobedo; Jennifer A. Seitz; Wayne Zipperer

2009-01-01

Ecosystem benefits from trees are linked directly to the amount of healthy urban forest canopy cover. Urban forest cover is dynamic and changes over time due to factors such as urban development, windstorms, tree removals, and growth. The amount of a city's canopy cover depends on its land use, climate, and people's preferences. This fact sheet examines how...

Performance Considerations for the SIMPL Single Photon, Polarimetric, Two-Color Laser Altimeter as Applied to Measurements of Forest Canopy Structure and Composition

Science.gov (United States)

Dabney, Philip W.; Harding, David J.; Valett, Susan R.; Vasilyev, Aleksey A.; Yu, Anthony W.

2012-01-01

The Slope Imaging Multi-polarization Photon-counting Lidar (SIMPL) is a multi-beam, micropulse airborne laser altimeter that acquires active and passive polarimetric optical remote sensing measurements at visible and near-infrared wavelengths. SIMPL was developed to demonstrate advanced measurement approaches of potential benefit for improved, more efficient spaceflight laser altimeter missions. SIMPL data have been acquired for wide diversity of forest types in the summers of 2010 and 2011 in order to assess the potential of its novel capabilities for characterization of vegetation structure and composition. On each of its four beams SIMPL provides highly-resolved measurements of forest canopy structure by detecting single-photons with 15 cm ranging precision using a narrow-beam system operating at a laser repetition rate of 11 kHz. Associated with that ranging data SIMPL provides eight amplitude parameters per beam unlike the single amplitude provided by typical laser altimeters. Those eight parameters are received energy that is parallel and perpendicular to that of the plane-polarized transmit pulse at 532 nm (green) and 1064 nm (near IR), for both the active laser backscatter retro-reflectance and the passive solar bi-directional reflectance. This poster presentation will cover the instrument architecture and highlight the performance of the SIMPL instrument with examples taken from measurements for several sites with distinct canopy structures and compositions. Specific performance areas such as probability of detection, after pulsing, and dead time, will be highlighted and addressed, along with examples of their impact on the measurements and how they limit the ability to accurately model and recover the canopy properties. To assess the sensitivity of SIMPL's measurements to canopy properties an instrument model has been implemented in the FLIGHT radiative transfer code, based on Monte Carlo simulation of photon transport. SIMPL data collected in 2010 over

Patterns of Canopy and Surface Layer Consumption in a Boreal Forest Fire from Repeat Airborne Lidar

Science.gov (United States)

Alonzo, Michael; Morton, Douglas C.; Cook, Bruce D.; Andersen, Hans-Erik; Babcock, Chad; Pattison, Robert

2017-01-01

Fire in the boreal region is the dominant agent of forest disturbance with direct impacts on ecosystem structure, carbon cycling, and global climate. Global and biome-scale impacts are mediated by burn severity, measured as loss of forest canopy and consumption of the soil organic layer. To date, knowledge of the spatial variability in burn severity has been limited by sparse field sampling and moderate resolution satellite data. Here, we used pre- and post-fire airborne lidar data to directly estimate changes in canopy vertical structure and surface elevation for a 2005 boreal forest fire on Alaskas Kenai Peninsula. We found that both canopy and surface losses were strongly linked to pre-fire species composition and exhibited important fine-scale spatial variability at sub-30m resolution. The fractional reduction in canopy volume ranged from 0.61 in lowland black spruce stands to 0.27 in mixed white spruce and broad leaf forest. Residual structure largely reflects standing dead trees, highlighting the influence of pre-fire forest structure on delayed carbon losses from above ground biomass, post-fire albedo, and variability in understory light environments. Median loss of surface elevation was highest in lowland black spruce stands (0.18 m) but much lower in mixed stands (0.02 m), consistent with differences in pre-fire organic layer accumulation. Spatially continuous depth-of-burn estimates from repeat lidar measurements provide novel information to constrain carbon emissions from the surface organic layer and may inform related research on post-fire successional trajectories. Spectral measures of burn severity from Landsat were correlated with canopy (r = 0.76) and surface (r = -0.71) removal in black spruce stands but captured less of the spatial variability in fire effects for mixed stands (canopy r = 0.56, surface r = -0.26), underscoring the difficulty in capturing fire effects in heterogeneous boreal forest landscapes using proxy measures of burn severity

Exploring the spatial distribution of light interception and photosynthesis of canopies by means of a functional-structural plant model

NARCIS (Netherlands)

Sarlikioti, V.; Visser, de P.H.B.; Marcelis, L.F.M.

2011-01-01

Background and Aims - At present most process-based models and the majority of three-dimensional models include simplifications of plant architecture that can compromise the accuracy of light interception simulations and, accordingly, canopy photosynthesis. The aim of this paper is to analyse canopy

Regional and historical factors supplement current climate in shaping global forest canopy height

DEFF Research Database (Denmark)

Zhang, Jian; Nielsen, Scott; Mao, Lingfeng

2016-01-01

on Light Detection and Ranging-derived maximum forest canopy height (Hmax) to test hypotheses relating Hmax to current climate (water availability, ambient energy and water–energy dynamics), regional evolutionary and biogeographic history, historical climate change, and human disturbance. We derived Hmax...... biogeographic regions, supporting the role of regional evolutionary and biogeographic history in structuring broad-scale patterns in canopy height. Furthermore, there were divergent relationships between climate and Hmax between the Southern and Northern Hemispheres, consistent with historical evolutionary...... contingencies modulating these relationships. Historical climate change was also related to Hmax, albeit not as strongly, with shorter canopy heights where late-Quaternary climate has been less stable. In contrast, human disturbance was only weakly related to Hmax at the scale (55 km) examined here. Synthesis...

Voxel-Based Spatial Filtering Method for Canopy Height Retrieval from Airborne Single-Photon Lidar

Directory of Open Access Journals (Sweden)

Hao Tang

2016-09-01

Full Text Available Airborne single-photon lidar (SPL is a new technology that holds considerable potential for forest structure and carbon monitoring at large spatial scales because it acquires 3D measurements of vegetation faster and more efficiently than conventional lidar instruments. However, SPL instruments use green wavelength (532 nm lasers, which are sensitive to background solar noise, and therefore SPL point clouds require more elaborate noise filtering than other lidar instruments to determine canopy heights, particularly in daytime acquisitions. Histogram-based aggregation is a commonly used approach for removing noise from photon counting lidar data, but it reduces the resolution of the dataset. Here we present an alternate voxel-based spatial filtering method that filters noise points efficiently while largely preserving the spatial integrity of SPL data. We develop and test our algorithms on an experimental SPL dataset acquired over Garrett County in Maryland, USA. We then compare canopy attributes retrieved using our new algorithm with those obtained from the conventional histogram binning approach. Our results show that canopy heights derived using the new algorithm have a strong agreement with field-measured heights (r2 = 0.69, bias = 0.42 m, RMSE = 4.85 m and discrete return lidar heights (r2 = 0.94, bias = 1.07 m, RMSE = 2.42 m. Results are consistently better than height accuracies from the histogram method (field data: r2 = 0.59, bias = 0.00 m, RMSE = 6.25 m; DRL: r2 = 0.78, bias = −0.06 m and RMSE = 4.88 m. Furthermore, we find that the spatial-filtering method retains fine-scale canopy structure detail and has lower errors over steep slopes. We therefore believe that automated spatial filtering algorithms such as the one presented here can support large-scale, canopy structure mapping from airborne SPL data.

Evaluation of physical structure value in spring-harvested grass/clover silage and hay fed to heifers

DEFF Research Database (Denmark)

Schulze, A.K.S.; Nørgaard, P.; Byskov, M.V.

2015-01-01

The physical structure value of conserved grass/clover forages of spring harvest was evaluated by assessing effects of harvest time, conservation method, iNDF/NDF ratio and NDF intake (NDFI) per kg BW on chewing activity and fecal particle size in dairy heifers. A mixed sward consisting of ryegrass...

Modifying Geometric-Optical Bidirectional Reflectance Model for Direct Inversion of Forest Canopy Leaf Area Index

Directory of Open Access Journals (Sweden)

Congrong Li

2015-08-01

Full Text Available Forest canopy leaf area index (LAI inversion based on remote sensing data is an important method to obtain LAI. Currently, the most widely-used model to achieve forest canopy structure parameters is the Li-Strahler geometric-optical bidirectional reflectance model, by considering the effect of crown shape and mutual shadowing, which is referred to as the GOMS model. However, it is difficult to retrieve LAI through the GOMS model directly because LAI is not a fundamental parameter of the model. In this study, a gap probability model was used to obtain the relationship between the canopy structure parameter nR2 and LAI. Thus, LAI was introduced into the GOMS model as an independent variable by replacing nR2 The modified GOMS (MGOMS model was validated by application to Dayekou in the Heihe River Basin of China. The LAI retrieved using the MGOMS model with optical multi-angle remote sensing data, high spatial resolution images and field-measured data was in good agreement with the field-measured LAI, with an R-square (R2 of 0.64, and an RMSE of 0.67. The results demonstrate that the MGOMS model obtained by replacing the canopy structure parameter nR2 of the GOMS model with LAI can be used to invert LAI directly and precisely.

Effects of sub-Arctic shrub canopies on snowmelt energetics

Science.gov (United States)

Bewley, D.; Essery, R.; Pomeroy, J.

2006-12-01

Much of the low Arctic is covered with shrub tundra, and there is increasing evidence that snowmelt rates are substantially different between shrub tundra and poorly vegetated sites. The cause of this remains uncertain, however, and extends beyond simple differences in albedo. Results are presented in this study from a detailed field investigation at Wolf Creek Research Basin in 2004 to determine the effect of two different shrub canopy structures on both melt rates and the partitioning of melt energy. The low shrub site (LSS) was essentially an unvegetated snowfield prior to melt (mean albedo ~0.85), and shrubs only became exposed during the last few days of melt reaching a mean height of 0.31 m and mean Plant Area Index (PAI) of 0.32. Shrubs at the tall shrub site (TSS) were partially buried initially (shrub fraction, mean height and PAI of 0.2, 0.9 m and 0.41) but dominated the landscape by the end of melt (corresponding values of 0.71, 1.6 m and 0.6). Melt rates were higher at TSS up until the exposure of shrubs and bare ground at LSS, after which the rates converged. A Shrub-Snow Canopy Model (SSCM) is developed to improve snowmelt simulations for shrub canopies by parameterizing the key shrub effects on surface fluxes, including the extinction of shortwave irradiance beneath shrubs and in canopy gaps, and the enhancement of snow surface fluxes of longwave radiation and sensible heat. SSCM was run for LSS assuming no shrubs were present above the variable snow and bare ground tiles, whereas for TSS an increasing shrub fraction above each tile was prescribed from observations. Results from both sites suggest that sensible heat fluxes contributed more melt energy than net radiation, and were greater during early melt at TSS due to the warming of exposed shrubs. SWE was accurately predicted against transect measurements at TSS (rms error 4 mm), but was overestimated at LSS (rms error 13 mm) since both air temperatures and turbulent transport were underestimated

Long-term fragmentation effects on the distribution and dynamics of canopy gaps in a tropical montane forest

Science.gov (United States)

Nicholas R. Vaughn; Gregory P. Asner; Christian P. Giardina

2015-01-01

Fragmentation alters forest canopy structure through various mechanisms, which in turn drive subsequent changes to biogeochemical processes and biological diversity. Using repeated airborne LiDAR (Light Detection and Ranging) mappings, we investigated the size distribution and dynamics of forest canopy gaps across a topical montane forest landscape in Hawaii naturally...

Dryland wheat domestication changed the development of aboveground architecture for a well-structured canopy.

Directory of Open Access Journals (Sweden)

Pu-Fang Li

Full Text Available We examined three different-ploidy wheat species to elucidate the development of aboveground architecture and its domesticated mechanism under environment-controlled field conditions. Architecture parameters including leaf, stem, spike and canopy morphology were measured together with biomass allocation, leaf net photosynthetic rate and instantaneous water use efficiency (WUE(i. Canopy biomass density was decreased from diploid to tetraploid wheat, but increased to maximum in hexaploid wheat. Population yield in hexaploid wheat was higher than in diploid wheat, but the population fitness and individual competition ability was higher in diploid wheats. Plant architecture was modified from a compact type in diploid wheats to an incompact type in tetraploid wheats, and then to a more compact type of hexaploid wheats. Biomass accumulation, population yield, harvest index and the seed to leaf ratio increased from diploid to tetraploid and hexaploid, associated with heavier specific internode weight and greater canopy biomass density in hexaploid and tetraploid than in diploid wheat. Leaf photosynthetic rate and WUEi were decreased from diploid to tetraploid and increased from tetraploid to hexaploid due to more compact leaf type in hexaploid and diploid than in tetraploid. Grain yield formation and WUEi were closely associated with spatial stance of leaves and stems. We conclude that the ideotype of dryland wheats could be based on spatial reconstruction of leaf type and further exertion of leaf photosynthetic rate.

Cotton responses to simulated insect damage: radiation-use efficiency, canopy architecture and leaf nitrogen content as affected by loss of reproductive organs

International Nuclear Information System (INIS)

Sadras, V.O.

1996-01-01

Key cotton pests feed preferentially on reproductive organs which are normally shed after injury. Loss of reproductive organs in cotton may decrease the rate of leaf nitrogen depletion associated with fruit growth and increase nitrogen uptake and reduction by extending the period of root and leaf growth compared with undamaged plants. Higher levels of leaf nitrogen resulting from more assimilation and less depletion could increase the photosynthetic capacity of damaged crops in relation to undamaged controls. To test this hypothesis, radiation-use efficiency (RUE = g dry matter per MJ of photosynthetically active radiation intercepted by the canopy) of crops in which flowerbuds and young fruits were manually removed was compared with that of undamaged controls. Removal of fruiting structures did not affect RUE when cotton was grown at low nitrogen supply and high plant density. In contrast, under high nitrogen supply and low plant density, fruit removal increased seasonal RUE by 20–27% compared to controls. Whole canopy measurements, however, failed to detect the expected variations in foliar nitrogen due to damage. Differences in RUE between damaged and undamaged canopies were in part associated with changes in plant and canopy structure (viz. internode number and length, canopy height, branch angle) that modified light distribution within the canopy. These structural responses and their influence on canopy light penetration and photosynthesis are synthetised in coefficients of light extinction (k) that were 10 to 30% smaller in damaged crops than in controls and in a positive correlation between RUE−1 and k for crops grown under favourable conditions (i.e. high nitrogen, low density). Changes in plant structure and their effects on canopy architecture and RUE should be considered in the analysis of cotton growth after damage by insects that induce abscission of reproductive organs. (author)

Canopy Chemistry (OTTER)

Data.gov (United States)

National Aeronautics and Space Administration — ABSTRACT: Canopy characteristics: leaf chemistry, specific leaf area, LAI, PAR, IPAR, NPP, standing biomass--see also: Meteorology (OTTER) for associated...

Assessment of Light Environment Variability in Broadleaved Forest Canopies Using Terrestrial Laser Scanning

Directory of Open Access Journals (Sweden)

Dimitry Van der Zande

2010-06-01

Full Text Available Light availability inside a forest canopy is of key importance to many ecosystem processes, such as photosynthesis and transpiration. Assessment of light availability and within-canopy light variability enables a more detailed understanding of these biophysical processes. The changing light-vegetation interaction in a homogeneous oak (Quercus robur L. stand was studied at different moments during the growth season using terrestrial laser scanning datasets and ray tracing technology. Three field campaigns were organized at regular time intervals (24 April 2008; 07 May 2008; 23 May 2008 to monitor the increase of foliage material. The laser scanning data was used to generate 3D representations of the forest stands, enabling structure feature extraction and light interception modeling, using the Voxel-Based Light Interception Model (VLIM. The VLIM is capable of estimating the relative light intensity or Percentage of Above Canopy Light (PACL at any arbitrary point in the modeled crown space. This resulted in a detailed description of the dynamic light environments inside the canopy. Mean vertical light extinction profiles were calculated for the three time frames, showing significant differences in light attenuation by the canopy between April 24 on the one hand, and May 7 and May 23 on the other hand. The proposed methodology created the opportunity to link these within-canopy light distributions to the increasing amount of photosynthetically active leaf material and its distribution in the considered 3D space.

Direct Scaling of Leaf-Resolving Biophysical Models from Leaves to Canopies

Science.gov (United States)

Bailey, B.; Mahaffee, W.; Hernandez Ochoa, M.

2017-12-01

Recent advances in the development of biophysical models and high-performance computing have enabled rapid increases in the level of detail that can be represented by simulations of plant systems. However, increasingly detailed models typically require increasingly detailed inputs, which can be a challenge to accurately specify. In this work, we explore the use of terrestrial LiDAR scanning data to accurately specify geometric inputs for high-resolution biophysical models that enables direct up-scaling of leaf-level biophysical processes. Terrestrial LiDAR scans generate "clouds" of millions of points that map out the geometric structure of the area of interest. However, points alone are often not particularly useful in generating geometric model inputs, as additional data processing techniques are required to provide necessary information regarding vegetation structure. A new method was developed that directly reconstructs as many leaves as possible that are in view of the LiDAR instrument, and uses a statistical backfilling technique to ensure that the overall leaf area and orientation distribution matches that of the actual vegetation being measured. This detailed structural data is used to provide inputs for leaf-resolving models of radiation, microclimate, evapotranspiration, and photosynthesis. Model complexity is afforded by utilizing graphics processing units (GPUs), which allows for simulations that resolve scales ranging from leaves to canopies. The model system was used to explore how heterogeneity in canopy architecture at various scales affects scaling of biophysical processes from leaves to canopies.

Utilizing In Situ Directional Hyperspectral Measurements to Validate Bio-Indicator Simulations for a Corn Crop Canopy

Science.gov (United States)

Cheng, Yen-Ben; Middleton, Elizabeth M.; Huemmrich, Karl F.; Zhang, Qingyuan; Campbell, Petya K. E.; Corp, Lawrence A.; Russ, Andrew L.; Kustas, William P.

2010-01-01

Two radiative transfer canopy models, SAIL and the two-layer Markov-Chain Canopy Reflectance Model (MCRM), were coupled with in situ leaf optical properties to simulate canopy-level spectral band ratio vegetation indices with the focus on the photochemical reflectance index in a cornfield. In situ hyperspectral measurements were made at both leaf and canopy levels. Leaf optical properties were obtained from both sunlit and shaded leaves. Canopy reflectance was acquired for eight different relative azimuth angles (psi) at three different view zenith angles (Theta (sub v)), and later used to validate model outputs. Field observations of photochemical reflectance index (PRI) for sunlit leaves exhibited lower values than shaded leaves, indicating higher light stress. Canopy PRI expressed obvious sensitivity to viewing geometry, as a function of both Theta (sub v) and psi . Overall, simulations from MCRM exhibited better agreements with in situ values than SAIL. When using only sunlit leaves as input, the MCRM-simulated PRI values showed satisfactory correlation and RMSE, as compared to in situ values. However, the performance of the MCRM model was significantly improved after defining a lower canopy layer comprised of shaded leaves beneath the upper sunlit leaf layer. Four other widely used band ratio vegetation indices were also studied and compared with the PRI results. MCRM simulations were able to generate satisfactory simulations for these other four indices when using only sunlit leaves as input; but unlike PRI, adding shaded leaves did not improve the performance of MCRM. These results support the hypothesis that the PRI is sensitive to physiological dynamics while the others detect static factors related to canopy structure. Sensitivity analysis was performed on MCRM in order to better understand the effects of structure related parameters on the PRI simulations. Leaf area index (LAI) showed the most significant impact on MCRM-simulated PRI among the parameters

Assimilating satellite-based canopy height within an ecosystem model to estimate aboveground forest biomass

Science.gov (United States)

Joetzjer, E.; Pillet, M.; Ciais, P.; Barbier, N.; Chave, J.; Schlund, M.; Maignan, F.; Barichivich, J.; Luyssaert, S.; Hérault, B.; von Poncet, F.; Poulter, B.

2017-07-01

Despite advances in Earth observation and modeling, estimating tropical biomass remains a challenge. Recent work suggests that integrating satellite measurements of canopy height within ecosystem models is a promising approach to infer biomass. We tested the feasibility of this approach to retrieve aboveground biomass (AGB) at three tropical forest sites by assimilating remotely sensed canopy height derived from a texture analysis algorithm applied to the high-resolution Pleiades imager in the Organizing Carbon and Hydrology in Dynamic Ecosystems Canopy (ORCHIDEE-CAN) ecosystem model. While mean AGB could be estimated within 10% of AGB derived from census data in average across sites, canopy height derived from Pleiades product was spatially too smooth, thus unable to accurately resolve large height (and biomass) variations within the site considered. The error budget was evaluated in details, and systematic errors related to the ORCHIDEE-CAN structure contribute as a secondary source of error and could be overcome by using improved allometric equations.

Deploying Fourier Coefficients to Unravel Soybean Canopy Diversity.

Science.gov (United States)

Jubery, Talukder Z; Shook, Johnathon; Parmley, Kyle; Zhang, Jiaoping; Naik, Hsiang S; Higgins, Race; Sarkar, Soumik; Singh, Arti; Singh, Asheesh K; Ganapathysubramanian, Baskar

2016-01-01

Soybean canopy outline is an important trait used to understand light interception ability, canopy closure rates, row spacing response, which in turn affects crop growth and yield, and directly impacts weed species germination and emergence. In this manuscript, we utilize a methodology that constructs geometric measures of the soybean canopy outline from digital images of canopies, allowing visualization of the genetic diversity as well as a rigorous quantification of shape parameters. Our choice of data analysis approach is partially dictated by the need to efficiently store and analyze large datasets, especially in the context of planned high-throughput phenotyping experiments to capture time evolution of canopy outline which will produce very large datasets. Using the Elliptical Fourier Transformation (EFT) and Fourier Descriptors (EFD), canopy outlines of 446 soybean plant introduction (PI) lines from 25 different countries exhibiting a wide variety of maturity, seed weight, and stem termination were investigated in a field experiment planted as a randomized complete block design with up to four replications. Canopy outlines were extracted from digital images, and subsequently chain coded, and expanded into a shape spectrum by obtaining the Fourier coefficients/descriptors. These coefficients successfully reconstruct the canopy outline, and were used to measure traditional morphometric traits. Highest phenotypic diversity was observed for roundness, while solidity showed the lowest diversity across all countries. Some PI lines had extraordinary shape diversity in solidity. For interpretation and visualization of the complexity in shape, Principal Component Analysis (PCA) was performed on the EFD. PI lines were grouped in terms of origins, maturity index, seed weight, and stem termination index. No significant pattern or similarity was observed among the groups; although interestingly when genetic marker data was used for the PCA, patterns similar to canopy

Modeling the radiation transfer of discontinuous canopies: results for gap probability and single-scattering contribution

Science.gov (United States)

Zhao, Feng; Zou, Kai; Shang, Hong; Ji, Zheng; Zhao, Huijie; Huang, Wenjiang; Li, Cunjun

2010-10-01

In this paper we present an analytical model for the computation of radiation transfer of discontinuous vegetation canopies. Some initial results of gap probability and bidirectional gap probability of discontinuous vegetation canopies, which are important parameters determining the radiative environment of the canopies, are given and compared with a 3- D computer simulation model. In the model, negative exponential attenuation of light within individual plant canopies is assumed. Then the computation of gap probability is resolved by determining the entry points and exiting points of the ray with the individual plants via their equations in space. For the bidirectional gap probability, which determines the single-scattering contribution of the canopy, a gap statistical analysis based model was adopted to correct the dependence of gap probabilities for both solar and viewing directions. The model incorporates the structural characteristics, such as plant sizes, leaf size, row spacing, foliage density, planting density, leaf inclination distribution. Available experimental data are inadequate for a complete validation of the model. So it was evaluated with a three dimensional computer simulation model for 3D vegetative scenes, which shows good agreement between these two models' results. This model should be useful to the quantification of light interception and the modeling of bidirectional reflectance distributions of discontinuous canopies.

Evaluating Uncertainties in Sap Flux Scaled Estimates of Forest Transpiration, Canopy Conductance and Photosynthesis

Science.gov (United States)

Ward, E. J.; Bell, D. M.; Clark, J. S.; Kim, H.; Oren, R.

2009-12-01

Thermal dissipation probes (TDPs) are a common method for estimating forest transpiration and canopy conductance from sap flux rates in trees, but their implementation is plagued by uncertainties arising from missing data and variability in the diameter and canopy position of trees, as well as sapwood conductivity within individual trees. Uncertainties in estimates of canopy conductance also translate into uncertainties in carbon assimilation in models such as the Canopy Conductance Constrained Carbon Assimilation (4CA) model that combine physiological and environmental data to estimate photosynthetic rates. We developed a method to propagate these uncertainties in the scaling and imputation of TDP data to estimates of canopy transpiration and conductance using a state-space Jarvis-type conductance model in a hierarchical Bayesian framework. This presentation will focus on the impact of these uncertainties on estimates of water and carbon fluxes using 4CA and data from the Duke Free Air Carbon Enrichment (FACE) project, which incorporates both elevated carbon dioxide and soil nitrogen treatments. We will also address the response of canopy conductance to vapor pressure deficit, incident radiation and soil moisture, as well as the effect of treatment-related stand structure differences in scaling TDP measurements. Preliminary results indicate that in 2006, a year of normal precipitation (1127 mm), canopy transpiration increased in elevated carbon dioxide ~8% on a ground area basis. In 2007, a year with a pronounced drought (800 mm precipitation), this increase was only present in the combined carbon dioxide and fertilization treatment. The seasonal dynamics of water and carbon fluxes will be discussed in detail.

Canopy soil bacterial communities altered by severing host tree limbs

Directory of Open Access Journals (Sweden)

Cody R. Dangerfield

2017-09-01

Full Text Available Trees of temperate rainforests host a large biomass of epiphytic plants, which are associated with soils formed in the forest canopy. Falling of epiphytic material results in the transfer of carbon and nutrients from the canopy to the forest floor. This study provides the first characterization of bacterial communities in canopy soils enabled by high-depth environmental sequencing of 16S rRNA genes. Canopy soil included many of the same major taxonomic groups of Bacteria that are also found in ground soil, but canopy bacterial communities were lower in diversity and contained different operational taxonomic units. A field experiment was conducted with epiphytic material from six Acer macrophyllum trees in Olympic National Park, Washington, USA to document changes in the bacterial communities of soils associated with epiphytic material that falls to the forest floor. Bacterial diversity and composition of canopy soil was highly similar, but not identical, to adjacent ground soil two years after transfer to the forest floor, indicating that canopy bacteria are almost, but not completely, replaced by ground soil bacteria. Furthermore, soil associated with epiphytic material on branches that were severed from the host tree and suspended in the canopy contained altered bacterial communities that were distinct from those in canopy material moved to the forest floor. Therefore, the unique nature of canopy soil bacteria is determined in part by the host tree and not only by the physical environmental conditions associated with the canopy. Connection to the living tree appears to be a key feature of the canopy habitat. These results represent an initial survey of bacterial diversity of the canopy and provide a foundation upon which future studies can more fully investigate the ecological and evolutionary dynamics of these communities.

Leaf Wetness within a Lily Canopy

NARCIS (Netherlands)

Jacobs, A.F.G.; Heusinkveld, B.G.; Klok, E.J.

2005-01-01

A wetness duration experiment was carried out within a lily field situated adjacent to coastal dunes in the Netherlands. A within-canopy model was applied to simulate leaf wetness in three layers, with equal leaf area indices, within the canopy. This simulation model is an extension of an existing

Forage intake and behavior of goats on Tanzania-grass pasture at two regrowth ages - doi: 10.4025/actascianimsci.v35i1.16035 Forage intake and behavior of goats on Tanzania-grass pasture at two regrowth ages - doi: 10.4025/actascianimsci.v35i1.16035

Directory of Open Access Journals (Sweden)

Wellington Kelson Alvarenga Silva

2013-01-01

Full Text Available Normal 0 21 false false false The forage mass, sward structure, the ingestive and grazing behavior and forage intake by goats grazing on Tanzania-grass at 22 and 37 days of regrowth were evaluated. A completely randomized experimental design was used, with eight replications for evaluating the pasture and bite depth, and six replications for evaluating intake, feeding and grazing behavior. The forage canopy height ranged from 64.1 to 92.7 cm. Higher forage mass was observed at 37 days, and the best leaf/stem ratio, at 22 regrowth days. The bite depth did not differ between regrowth ages. The biting rate for the 22 regrowth days (23.07 bites min.-1 was higher than at 37 days (19.06 bites min.-1. The grazing time was longer at the regrowth age of 22 days (5.58h than at 37 days (4.51h. The average feed intake was 2.75% of the body weight and was not different between regrowth ages.  The forage mass, sward structure, the ingestive and grazing behavior and forage intake by goats grazing on Tanzania-grass at 22 and 37 days of regrowth were evaluated. A completely randomized experimental design was used, with eight replications for evaluating the pasture and bite depth, and six replications for evaluating intake, feeding and grazing behavior. The forage canopy height ranged from 64.1 to 92.7 cm. Higher forage mass was observed at 37 days, and the best leaf/stem ratio, at 22 regrowth days. The bite depth did not differ between regrowth ages. The biting rate for the 22 regrowth days (23.07 bites min.-1 was higher than at 37 days (19.06 bites min.-1. The grazing time was longer at the regrowth age of 22 days (5.58h than at 37 days (4.51h. The average feed intake was 2.75% of the body weight and was not different between regrowth ages.  

Putting out fire with gasoline: pitfalls in the silvicultural treatment of canopy fuels

Science.gov (United States)

Christopher R. Keyes; J. Morgan Varner

2007-01-01

There is little question that forest stand structure is directly related to fire behavior, and that canopy fuel structure may be altered using silvicultural methods to successfully modify forest fire behavior and reduce susceptibility to crown fire initiation and spread. Silvicultural treatments can remediate hazardous stand structures that have developed as a result...

Modeling percent tree canopy cover: a pilot study

Science.gov (United States)

John W. Coulston; Gretchen G. Moisen; Barry T. Wilson; Mark V. Finco; Warren B. Cohen; C. Kenneth Brewer

2012-01-01

Tree canopy cover is a fundamental component of the landscape, and the amount of cover influences fire behavior, air pollution mitigation, and carbon storage. As such, efforts to empirically model percent tree canopy cover across the United States are a critical area of research. The 2001 national-scale canopy cover modeling and mapping effort was completed in 2006,...

The Atmospheric Chemistry and Canopy Exchange Simulation System (ACCESS: model description and application to a temperate deciduous forest canopy

Directory of Open Access Journals (Sweden)

R. D. Saylor

2013-01-01

Full Text Available Forest canopies are primary emission sources of biogenic volatile organic compounds (BVOCs and have the potential to significantly influence the formation and distribution of secondary organic aerosol (SOA mass. Biogenically-derived SOA formed as a result of emissions from the widespread forests across the globe may affect air quality in populated areas, degrade atmospheric visibility, and affect climate through direct and indirect forcings. In an effort to better understand the formation of SOA mass from forest emissions, a 1-D column model of the multiphase physical and chemical processes occurring within and just above a vegetative canopy is being developed. An initial, gas-phase-only version of this model, the Atmospheric Chemistry and Canopy Exchange Simulation System (ACCESS, includes processes accounting for the emission of BVOCs from the canopy, turbulent vertical transport within and above the canopy and throughout the height of the planetary boundary layer (PBL, near-explicit representation of chemical transformations, mixing with the background atmosphere and bi-directional exchange between the atmosphere and canopy and the atmosphere and forest floor. The model formulation of ACCESS is described in detail and results are presented for an initial application of the modeling system to Walker Branch Watershed, an isoprene-emission-dominated forest canopy in the southeastern United States which has been the focal point for previous chemical and micrometeorological studies. Model results of isoprene profiles and fluxes are found to be consistent with previous measurements made at the simulated site and with other measurements made in and above mixed deciduous forests in the southeastern United States. Sensitivity experiments are presented which explore how canopy concentrations and fluxes of gas-phase precursors of SOA are affected by background anthropogenic nitrogen oxides (NO_x. Results from these experiments suggest that the

The leaf angle distribution of natural plant populations: assessing the canopy with a novel software tool.

Science.gov (United States)

Müller-Linow, Mark; Pinto-Espinosa, Francisco; Scharr, Hanno; Rascher, Uwe

2015-01-01

Three-dimensional canopies form complex architectures with temporally and spatially changing leaf orientations. Variations in canopy structure are linked to canopy function and they occur within the scope of genetic variability as well as a reaction to environmental factors like light, water and nutrient supply, and stress. An important key measure to characterize these structural properties is the leaf angle distribution, which in turn requires knowledge on the 3-dimensional single leaf surface. Despite a large number of 3-d sensors and methods only a few systems are applicable for fast and routine measurements in plants and natural canopies. A suitable approach is stereo imaging, which combines depth and color information that allows for easy segmentation of green leaf material and the extraction of plant traits, such as leaf angle distribution. We developed a software package, which provides tools for the quantification of leaf surface properties within natural canopies via 3-d reconstruction from stereo images. Our approach includes a semi-automatic selection process of single leaves and different modes of surface characterization via polygon smoothing or surface model fitting. Based on the resulting surface meshes leaf angle statistics are computed on the whole-leaf level or from local derivations. We include a case study to demonstrate the functionality of our software. 48 images of small sugar beet populations (4 varieties) have been analyzed on the base of their leaf angle distribution in order to investigate seasonal, genotypic and fertilization effects on leaf angle distributions. We could show that leaf angle distributions change during the course of the season with all varieties having a comparable development. Additionally, different varieties had different leaf angle orientation that could be separated in principle component analysis. In contrast nitrogen treatment had no effect on leaf angles. We show that a stereo imaging setup together with the

Tree Canopy Characterization for EO-1 Reflective and Thermal Infrared Validation Studies: Rochester, New York

Science.gov (United States)

Ballard, Jerrell R., Jr.; Smith, James A.

2002-01-01

The tree canopy characterization presented herein provided ground and tree canopy data for different types of tree canopies in support of EO-1 reflective and thermal infrared validation studies. These characterization efforts during August and September of 2001 included stem and trunk location surveys, tree structure geometry measurements, meteorology, and leaf area index (LAI) measurements. Measurements were also collected on thermal and reflective spectral properties of leaves, tree bark, leaf litter, soil, and grass. The data presented in this report were used to generate synthetic reflective and thermal infrared scenes and images that were used for the EO-1 Validation Program. The data also were used to evaluate whether the EO-1 ALI reflective channels can be combined with the Landsat-7 ETM+ thermal infrared channel to estimate canopy temperature, and also test the effects of separating the thermal and reflective measurements in time resulting from satellite formation flying.

Modeling radiative transfer in tropical rainforest canopies: sensitivity of simulated albedo to canopy architectural and optical parameters

Directory of Open Access Journals (Sweden)

Sílvia N. M. Yanagi

2011-12-01

Full Text Available This study evaluates the sensitivity of the surface albedo simulated by the Integrated Biosphere Simulator (IBIS to a set of Amazonian tropical rainforest canopy architectural and optical parameters. The parameters tested in this study are the orientation and reflectance of the leaves of upper and lower canopies in the visible (VIS and near-infrared (NIR spectral bands. The results are evaluated against albedo measurements taken above the K34 site at the INPA (Instituto Nacional de Pesquisas da Amazônia Cuieiras Biological Reserve. The sensitivity analysis indicates a strong response to the upper canopy leaves orientation (x up and to the reflectivity in the near-infrared spectral band (rNIR,up, a smaller sensitivity to the reflectivity in the visible spectral band (rVIS,up and no sensitivity at all to the lower canopy parameters, which is consistent with the canopy structure. The combination of parameters that minimized the Root Mean Square Error and mean relative error are Xup = 0.86, rVIS,up = 0.062 and rNIR,up = 0.275. The parameterizations performed resulted in successful simulations of tropical rainforest albedo by IBIS, indicating its potential to simulate the canopy radiative transfer for narrow spectral bands and permitting close comparison with remote sensing products.Este estudo avalia a sensibilidade do albedo da superfície pelo Simulador Integrado da Biosfera (IBIS a um conjunto de parâmetros que representam algumas propriedades arquitetônicas e óticas do dossel da floresta tropical Amazônica. Os parâmetros testados neste estudo são a orientação e refletância das folhas do dossel superior e inferior nas bandas espectrais do visível (VIS e infravermelho próximo (NIR. Os resultados são avaliados contra observações feitas no sítio K34 pertencente ao Instituto Nacional de Pesquisas da Amazônia (INPA na Reserva Biológica de Cuieiras. A análise de sensibilidade indica uma forte resposta aos parâmetros de orienta

West Coast Canopy-Forming Kelp, 1989-2014

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — These data include the general extents of canopy-forming kelp surveys from 1989 to 2014 and a compilation of existing data sets delineating canopy-forming kelp beds...

Using a stand-level model to predict light absorption in stands with vertically and horizontally heterogeneous canopies

Directory of Open Access Journals (Sweden)

David I Forrester

2014-09-01

Full Text Available Background Forest ecosystem functioning is strongly influenced by the absorption of photosynthetically active radiation (APAR, and therefore, accurate predictions of APAR are critical for many process-based forest growth models. The Lambert-Beer law can be applied to estimate APAR for simple homogeneous canopies composed of one layer, one species, and no canopy gaps. However, the vertical and horizontal structure of forest canopies is rarely homogeneous. Detailed tree-level models can account for this heterogeneity but these often have high input and computational demands and work on finer temporal and spatial resolutions than required by stand-level growth models. The aim of this study was to test a stand-level light absorption model that can estimate APAR by individual species in mixed-species and multi-layered stands with any degree of canopy openness including open-grown trees to closed canopies. Methods The stand-level model was compared with a detailed tree-level model that has already been tested in mixed-species stands using empirical data. Both models were parameterised for five different forests, including a wide range of species compositions, species proportions, stand densities, crown architectures and canopy structures. Results The stand-level model performed well in all stands except in the stand where extinction coefficients were unusually variable and it appears unlikely that APAR could be predicted in such stands using (tree- or stand-level models that do not allow individuals of a given species to have different extinction coefficients, leaf-area density or analogous parameters. Conclusion This model is parameterised with species-specific information about extinction coefficients and mean crown length, diameter, height and leaf area. It could be used to examine light dynamics in complex canopies and in stand-level growth models.

Effects of overstory retention, herbicides, and fertilization on sub-canopy vegetation structure and functional group composition in loblolly pine forests restored to longleaf pine

Science.gov (United States)

Benjamin O. Knapp; Joan L. Walker; G. Geoff Wang; Huifeng Hu; Robert N.  Addington

2014-01-01

The desirable structure of longleaf pine forests, which generally includes a relatively open canopy of pines, very few woody stems in the mid-story, and a well-developed, herbaceous ground layer, provides critical habitat for flora and fauna and contributes to ecosystem function. Current efforts to restore longleaf pine to upland sites dominated by second-growth...

Modelling Age- and Density-Related Gas Exchange of Picea abies Canopies in the Fichtelgebirge, Germany

OpenAIRE

Falge, Eva; Tennhunen, John D.; Ryel, Ronald J.; Alsheimer, Martina; Köstner, Barbara

2000-01-01

International audience; Differences in canopy exchange of water and carbon dioxide that occur due to changes in tree structure and density in montane Norway spruce stands of Central Germany were analyzed with a three dimensional microclimate and gas exchange model STANDFLUX. The model was used to calculate forest radiation absorption, the net photosynthesis and transpiration of single trees, and gas exchange of tree canopies. Model parameterizations were derived for six stands of Picea abies ...

Thermal IR exitance model of a plant canopy

Science.gov (United States)

Kimes, D. S.; Smith, J. A.; Link, L. E.

1981-01-01

A thermal IR exitance model of a plant canopy based on a mathematical abstraction of three horizontal layers of vegetation was developed. Canopy geometry within each layer is quantitatively described by the foliage and branch orientation distributions and number density. Given this geometric information for each layer and the driving meteorological variables, a system of energy budget equations was determined and solved for average layer temperatures. These estimated layer temperatures, together with the angular distributions of radiating elements, were used to calculate the emitted thermal IR radiation as a function of view angle above the canopy. The model was applied to a lodgepole pine (Pinus contorta) canopy over a diurnal cycle. Simulated vs measured radiometric average temperatures of the midcanopy layer corresponded with 2 C. Simulation results suggested that canopy geometry can significantly influence the effective radiant temperature recorded at varying sensor view angles.

Hierarchical Canopy Dynamics of Electrolyte-Doped Nanoscale Ionic Materials

KAUST Repository

Jespersen, Michael L.

2013-12-23

Nanoscale ionic materials (NIMs) are organic-inorganic hybrids prepared from ionically functionalized nanoparticles (NP) neutralized by oligomeric polymer counterions. NIMs are designed to behave as liquids under ambient conditions in the absence of solvent and have no volatile organic content, making them useful for a number of applications. We have used nuclear magnetic resonance relaxation and pulsed-field gradient NMR to probe local and collective canopy dynamics in NIMs based on 18-nm silica NPs with a covalently bound anionic corona, neutralized by amine-terminated ethylene oxide/propylene oxide block copolymers. The NMR relaxation studies show that the nanosecond-scale canopy dynamics depend on the degree of neutralization, the canopy radius of gyration, and crowding at the ionically modified NP surface. Two canopy populations are observed in the diffusion experiments, demonstrating that one fraction of the canopy is bound to the NP surface on the time scale (milliseconds) of the diffusion experiment and is surrounded by a more mobile layer of canopy that is unable to access the surface due to molecular crowding. The introduction of electrolyte ions (Na+ or Mg2+) screens the canopy-corona electrostatic interactions, resulting in a reduced bulk viscosity and faster canopy exchange. The magnitude of the screening effect depends upon ion concentration and valence, providing a simple route for tuning the macroscopic properties of NIMs. © 2013 American Chemical Society.

Hierarchical Canopy Dynamics of Electrolyte-Doped Nanoscale Ionic Materials

KAUST Repository

Jespersen, Michael L.; Mirau, Peter A.; von Meerwall, Ernst D.; Koerner, Hilmar; Vaia, Richard A.; Fernandes, Nikhil J.; Giannelis, Emmanuel P.

2013-01-01

Nanoscale ionic materials (NIMs) are organic-inorganic hybrids prepared from ionically functionalized nanoparticles (NP) neutralized by oligomeric polymer counterions. NIMs are designed to behave as liquids under ambient conditions in the absence of solvent and have no volatile organic content, making them useful for a number of applications. We have used nuclear magnetic resonance relaxation and pulsed-field gradient NMR to probe local and collective canopy dynamics in NIMs based on 18-nm silica NPs with a covalently bound anionic corona, neutralized by amine-terminated ethylene oxide/propylene oxide block copolymers. The NMR relaxation studies show that the nanosecond-scale canopy dynamics depend on the degree of neutralization, the canopy radius of gyration, and crowding at the ionically modified NP surface. Two canopy populations are observed in the diffusion experiments, demonstrating that one fraction of the canopy is bound to the NP surface on the time scale (milliseconds) of the diffusion experiment and is surrounded by a more mobile layer of canopy that is unable to access the surface due to molecular crowding. The introduction of electrolyte ions (Na+ or Mg2+) screens the canopy-corona electrostatic interactions, resulting in a reduced bulk viscosity and faster canopy exchange. The magnitude of the screening effect depends upon ion concentration and valence, providing a simple route for tuning the macroscopic properties of NIMs. © 2013 American Chemical Society.

Improved quality of beneath-canopy grass in South African savannas: Local and seasonal variation

NARCIS (Netherlands)

Treydte, A.C.; Looringh van Beeck, F.A.; Ludwig, F.; Heitkonig, I.M.A.

2008-01-01

Questions: Do large trees improve the nutrient content and the structure of the grass layer in savannas? Does the magnitude of this improvement differ with locality ( soil nutrients) and season ( water availability)? Are grass structure and species composition beneath tree canopies influenced by

Estimation of leaf area index for cotton canopies using the LI-COR LAI-2000 plant canopy analyzer

International Nuclear Information System (INIS)

Hicks, S.K.; Lascano, R.J.

1995-01-01

Measurement of leaf area index (LAI) is useful for understanding cotton (Gossypium hirsutum L.) growth, water use, and canopy light interception. Destructive measurement is time consuming and labor intensive. Our objective was to evaluate sampling procedures using the Li-Cor (Lincoln, NE) LAI 2000 plant canopy analyzer (PCA) for nondestructive estimation of cotton LAI on the southern High Plains of Texas. We evaluated shading as a way to allow PCA measurements in direct sunlight and the influence of solar direction when using this procedure. We also evaluated a test of canopy homogeneity (information required for setting PCA field of view), determined the number of below-canopy measurements required, examined the influence of leaf wilting on PCA LAI determinations, and tested an alternative method (masking the sensor's two outer rings) for calculating LAI from PCA measurements. The best agreement between PCA and destructively measured LAI values was obtained when PCA observations were made either during uniformly overcast conditions or around solar noon using the shading method. Heterogeneous canopies with large gaps between rows required both a restricted (45 degrees) azimuthal field of view and averaging the LAI values for two transects, made with the field of view parallel and then perpendicular to the row direction. This method agreed well (r2 = 0.84) with destructively measured LAI in the range of 0.5 to 3.5 and did not deviate from a 1:1 relationship. The PCA underestimated LAI by greater than or equal 20% when measurements were made on canopies wilted due to water stress. Masking the PCA sensor's outer rings did not improve the relationship between estimated and measured LAI in the range of LAI sampled

A Theoretically Consistent Framework for Modelling Lagrangian Particle Deposition in Plant Canopies

Science.gov (United States)

Bailey, Brian N.; Stoll, Rob; Pardyjak, Eric R.

2018-06-01

We present a theoretically consistent framework for modelling Lagrangian particle deposition in plant canopies. The primary focus is on describing the probability of particles encountering canopy elements (i.e., potential deposition), and provides a consistent means for including the effects of imperfect deposition through any appropriate sub-model for deposition efficiency. Some aspects of the framework draw upon an analogy to radiation propagation through a turbid medium with which to develop model theory. The present method is compared against one of the most commonly used heuristic Lagrangian frameworks, namely that originally developed by Legg and Powell (Agricultural Meteorology, 1979, Vol. 20, 47-67), which is shown to be theoretically inconsistent. A recommendation is made to discontinue the use of this heuristic approach in favour of the theoretically consistent framework developed herein, which is no more difficult to apply under equivalent assumptions. The proposed framework has the additional advantage that it can be applied to arbitrary canopy geometries given readily measurable parameters describing vegetation structure.

Amazon Forests Maintain Consistent Canopy Structure and Greenness During the Dry Season

Science.gov (United States)

Morton, Douglas C.; Nagol, Jyoteshwar; Carabajal, Claudia C.; Rosette, Jacqueline; Palace, Michael; Cook, Bruce D.; Vermote, Eric F.; Harding, David J.; North, Peter R. J.

2014-01-01

The seasonality of sunlight and rainfall regulates net primary production in tropical forests. Previous studies have suggested that light is more limiting than water for tropical forest productivity, consistent with greening of Amazon forests during the dry season in satellite data.We evaluated four potential mechanisms for the seasonal green-up phenomenon, including increases in leaf area or leaf reflectance, using a sophisticated radiative transfer model and independent satellite observations from lidar and optical sensors. Here we show that the apparent green up of Amazon forests in optical remote sensing data resulted from seasonal changes in near-infrared reflectance, an artefact of variations in sun-sensor geometry. Correcting this bidirectional reflectance effect eliminated seasonal changes in surface reflectance, consistent with independent lidar observations and model simulations with unchanging canopy properties. The stability of Amazon forest structure and reflectance over seasonal timescales challenges the paradigm of light-limited net primary production in Amazon forests and enhanced forest growth during drought conditions. Correcting optical remote sensing data for artefacts of sun-sensor geometry is essential to isolate the response of global vegetation to seasonal and interannual climate variability.

The roles of dimensionality, canopies and complexity in ecosystem monitoring.

Directory of Open Access Journals (Sweden)

Christopher H R Goatley

Full Text Available Canopies are common among autotrophs, increasing their access to light and thereby increasing competitive abilities. If viewed from above canopies may conceal objects beneath them creating a 'canopy effect'. Due to complexities in collecting 3-dimensional data, most ecosystem monitoring programmes reduce dimensionality when sampling, resorting to planar views. The resultant 'canopy effects' may bias data interpretation, particularly following disturbances. Canopy effects are especially relevant on coral reefs where coral cover is often used to evaluate and communicate ecosystem health. We show that canopies hide benthic components including massive corals and algal turfs, and as planar views are almost ubiquitously used to monitor disturbances, the loss of vulnerable canopy-forming corals may bias findings by presenting pre-existing benthic components as an altered system. Our reliance on planar views in monitoring ecosystems, especially coral cover on reefs, needs to be reassessed if we are to better understand the ecological consequences of ever more frequent disturbances.

Biophysical information in asymmetric and symmetric diurnal bidirectional canopy reflectance

Science.gov (United States)

Vanderbilt, Vern C.; Caldwell, William F.; Pettigrew, Rita E.; Ustin, Susan L.; Martens, Scott N.; Rousseau, Robert A.; Berger, Kevin M.; Ganapol, B. D.; Kasischke, Eric S.; Clark, Jenny A.

1991-01-01

The authors present a theory for partitioning the information content in diurnal bidirectional reflectance measurements in order to detect differences potentially related to biophysical variables. The theory, which divides the canopy reflectance into asymmetric and symmetric functions of solar azimuth angle, attributes asymmetric variation to diurnal changes in the canopy biphysical properties. The symmetric function is attributed to the effects of sunlight interacting with a hypothetical average canopy which would display the average diurnal properties of the actual canopy. The authors analyzed radiometer data collected diurnally in the Thematic Mapper wavelength bands from two walnut canopies that received differing irrigation treatments. The reflectance of the canopies varied with sun and view angles and across seven bands in the visible, near-infrared, and middle infrared wavelength regions. Although one of the canopies was permanently water stressed and the other was stressed in mid-afternoon each day, no water stress signature was unambiguously evident in the reflectance data.

A Photogrammetric Workflow for the Creation of a Forest Canopy Height Model from Small Unmanned Aerial System Imagery

Directory of Open Access Journals (Sweden)

Philippe Lejeune

2013-11-01

Full Text Available The recent development of operational small unmanned aerial systems (UASs opens the door for their extensive use in forest mapping, as both the spatial and temporal resolution of UAS imagery better suit local-scale investigation than traditional remote sensing tools. This article focuses on the use of combined photogrammetry and “Structure from Motion” approaches in order to model the forest canopy surface from low-altitude aerial images. An original workflow, using the open source and free photogrammetric toolbox, MICMAC (acronym for Multi Image Matches for Auto Correlation Methods, was set up to create a digital canopy surface model of deciduous stands. In combination with a co-registered light detection and ranging (LiDAR digital terrain model, the elevation of vegetation was determined, and the resulting hybrid photo/LiDAR canopy height model was compared to data from a LiDAR canopy height model and from forest inventory data. Linear regressions predicting dominant height and individual height from plot metrics and crown metrics showed that the photogrammetric canopy height model was of good quality for deciduous stands. Although photogrammetric reconstruction significantly smooths the canopy surface, the use of this workflow has the potential to take full advantage of the flexible revisit period of drones in order to refresh the LiDAR canopy height model and to collect dense multitemporal canopy height series.

Exploring Relationships between Canopy Architecture, Light Distribution, and Photosynthesis in Contrasting Rice Genotypes Using 3D Canopy Reconstruction

Directory of Open Access Journals (Sweden)

Alexandra J. Burgess

2017-05-01

Full Text Available The arrangement of leaf material is critical in determining the light environment, and subsequently the photosynthetic productivity of complex crop canopies. However, links between specific canopy architectural traits and photosynthetic productivity across a wide genetic background are poorly understood for field grown crops. The architecture of five genetically diverse rice varieties—four parental founders of a multi-parent advanced generation intercross (MAGIC population plus a high yielding Philippine variety (IR64—was captured at two different growth stages using a method for digital plant reconstruction based on stereocameras. Ray tracing was employed to explore the effects of canopy architecture on the resulting light environment in high-resolution, whilst gas exchange measurements were combined with an empirical model of photosynthesis to calculate an estimated carbon gain and total light interception. To further test the impact of different dynamic light patterns on photosynthetic properties, an empirical model of photosynthetic acclimation was employed to predict the optimal light-saturated photosynthesis rate (Pmax throughout canopy depth, hypothesizing that light is the sole determinant of productivity in these conditions. First, we show that a plant type with steeper leaf angles allows more efficient penetration of light into lower canopy layers and this, in turn, leads to a greater photosynthetic potential. Second the predicted optimal Pmax responds in a manner that is consistent with fractional interception and leaf area index across this germplasm. However, measured Pmax, especially in lower layers, was consistently higher than the optimal Pmax indicating factors other than light determine photosynthesis profiles. Lastly, varieties with more upright architecture exhibit higher maximum quantum yield of photosynthesis indicating a canopy-level impact on photosynthetic efficiency.

Climatic, biological, and land cover controls on the exchange of gas-phase semivolatile chemical pollutants between forest canopies and the atmosphere.

Science.gov (United States)

Nizzetto, Luca; Perlinger, Judith A

2012-03-06

An ecophysiological model of a structured broadleaved forest canopy was coupled to a chemical fate model of the air-canopy exchange of gaseous semivolatile chemicals to dynamically assess the short-term (hours) and medium term (days to season) air-canopy exchange and the influence of biological, climatic, and land cover drivers on the dynamics of the air-canopy exchange and on the canopy storage for airborne semivolatile pollutants. The chemical fate model accounts for effects of short-term variations in air temperature, wind speed, stomatal opening, and leaf energy balance, all as a function of layer in the canopy. Simulations showed the potential occurrence of intense short/medium term re-emission of pollutants having log K(OA) up to 10.7 from the canopy as a result of environmental forcing. In addition, relatively small interannual variations in seasonally averaged air temperature, canopy biomass, and precipitation can produce relevant changes in the canopy storage capacity for the chemicals. It was estimated that possible climate change related variability in environmental parameters (e.g., an increase of 2 °C in seasonally averaged air temperature in combination with a 10% reduction in canopy biomass due to, e.g., disturbance or acclimatization) may cause a reduction in canopy storage capacity of up to 15-25%, favoring re-emission and potential for long-range atmospheric transport. On the other hand, an increase of 300% in yearly precipitation can increase canopy sequestration by 2-7% for the less hydrophobic compounds.

Forest canopy temperatures: dynamics, controls, and relationships with ecosystem fluxes

Science.gov (United States)

Still, C. J.; Griffith, D.; Kim, Y.; Law, B. E.; Hanson, C. V.; Kwon, H.; Schulze, M.; Detto, M.; Pau, S.

2017-12-01

Temperature strongly affects enzymatic reactions, ecosystem biogeochemistry, and species distributions. Although most focus is on air temperature, the radiative or skin temperature of plants is more relevant. Canopy skin temperature dynamics reflect biophysical, physiological, and anatomical characteristics and interactions with the environment, and can be used to examine forest responses to stresses like droughts and heat waves. Thermal infrared (TIR) imaging allows for extensive temporal and spatial sampling of canopy temperatures, particularly compared to spot measurements using thermocouples. We present results of TIR imaging of forest canopies at eddy covariance flux tower sites in the US Pacific Northwest and in Panama. These forests range from an old-growth temperate rainforest to a second growth semi-arid pine forest to a semi-deciduous tropical forest. Canopy temperature regimes at these sites are highly variable. Canopy temperatures at all forest sites displayed frequent departures from air temperature, particularly during clear sky conditions, with elevated canopy temperatures during the day and depressed canopy temperatures at night compared to air temperature. Comparison of canopy temperatures to fluxes of carbon dioxide, water vapor, and energy reveals stronger relationships than those found with air temperature. Daytime growing season net ecosystem exchange at the pine forest site is better explained by canopy temperature (r2 = 0.61) than air temperature (r2 = 0.52). At the semi-deciduous tropical forest, canopy photosynthesis is highly correlated with canopy temperature (r2 = 0.51), with a distinct optimum temperature for photosynthesis ( 31 °C) that agrees with leaf-level measurements. During the peak of one heat wave at an old-growth temperate rainforest, hourly averaged air temperature exceeded 35 °C, 10 °C above average. Peak hourly canopy temperature approached 40 °C, and leaf-to-air vapor pressure deficit exceeded 6 kPa. These extreme

Removing forest canopy cover restores a reptile assemblage.

Science.gov (United States)

Pike, David A; Webb, Jonathan K; Shine, Richard

2011-01-01

Humans are rapidly altering natural systems, leading to changes in the distribution and abundance of species. However, so many changes are occurring simultaneously (e.g., climate change, habitat fragmentation) that it is difficult to determine the cause of population fluctuations from correlational studies. We used a manipulative field experiment to determine whether forest canopy cover directly influences reptile assemblages on rock outcrops in southeastern Australia. Our experimental design consisted of three types of rock outcrops: (1) shady sites in which overgrown vegetation was manually removed (n = 25); (2) overgrown controls (n = 30); and (3) sun-exposed controls (n = 20). Following canopy removal, we monitored reptile responses over 30 months. Canopy removal increased reptile species richness, the proportion of shelter sites used by reptiles, and relative abundances of five species that prefer sun-exposed habitats. Our manipulation also decreased the abundances of two shade-tolerant species. Canopy cover thus directly influences this reptile assemblage, with the effects of canopy removal being dependent on each species' habitat preferences (i.e., selection or avoidance of sun-exposed habitat). Our study suggests that increases in canopy cover can cause declines of open-habitat specialists, as previously suggested by correlative studies from a wide range of taxa. Given that reptile colonization of manipulated outcrops occurred rapidly, artificially opening the canopy in ecologically informed ways could help to conserve imperiled species with patchy distributions and low vagility that are threatened by vegetation overgrowth. One such species is Australia's most endangered snake, the broadheaded snake (Hoplocephalus bungaroides).

Modeling canopy-induced turbulence in the Earth system: a unified parameterization of turbulent exchange within plant canopies and the roughness sublayer (CLM-ml v0)

Science.gov (United States)

Bonan, Gordon B.; Patton, Edward G.; Harman, Ian N.; Oleson, Keith W.; Finnigan, John J.; Lu, Yaqiong; Burakowski, Elizabeth A.

2018-04-01

Land surface models used in climate models neglect the roughness sublayer and parameterize within-canopy turbulence in an ad hoc manner. We implemented a roughness sublayer turbulence parameterization in a multilayer canopy model (CLM-ml v0) to test if this theory provides a tractable parameterization extending from the ground through the canopy and the roughness sublayer. We compared the canopy model with the Community Land Model (CLM4.5) at seven forest, two grassland, and three cropland AmeriFlux sites over a range of canopy heights, leaf area indexes, and climates. CLM4.5 has pronounced biases during summer months at forest sites in midday latent heat flux, sensible heat flux, gross primary production, nighttime friction velocity, and the radiative temperature diurnal range. The new canopy model reduces these biases by introducing new physics. Advances in modeling stomatal conductance and canopy physiology beyond what is in CLM4.5 substantially improve model performance at the forest sites. The signature of the roughness sublayer is most evident in nighttime friction velocity and the diurnal cycle of radiative temperature, but is also seen in sensible heat flux. Within-canopy temperature profiles are markedly different compared with profiles obtained using Monin-Obukhov similarity theory, and the roughness sublayer produces cooler daytime and warmer nighttime temperatures. The herbaceous sites also show model improvements, but the improvements are related less systematically to the roughness sublayer parameterization in these canopies. The multilayer canopy with the roughness sublayer turbulence improves simulations compared with CLM4.5 while also advancing the theoretical basis for surface flux parameterizations.

Evaluating radiative transfer schemes treatment of vegetation canopy architecture in land surface models

Science.gov (United States)

Braghiere, Renato; Quaife, Tristan; Black, Emily

2016-04-01

Incoming shortwave radiation is the primary source of energy driving the majority of the Earth's climate system. The partitioning of shortwave radiation by vegetation into absorbed, reflected, and transmitted terms is important for most of biogeophysical processes, including leaf temperature changes and photosynthesis, and it is currently calculated by most of land surface schemes (LSS) of climate and/or numerical weather prediction models. The most commonly used radiative transfer scheme in LSS is the two-stream approximation, however it does not explicitly account for vegetation architectural effects on shortwave radiation partitioning. Detailed three-dimensional (3D) canopy radiative transfer schemes have been developed, but they are too computationally expensive to address large-scale related studies over long time periods. Using a straightforward one-dimensional (1D) parameterisation proposed by Pinty et al. (2006), we modified a two-stream radiative transfer scheme by including a simple function of Sun zenith angle, so-called "structure factor", which does not require an explicit description and understanding of the complex phenomena arising from the presence of vegetation heterogeneous architecture, and it guarantees accurate simulations of the radiative balance consistently with 3D representations. In order to evaluate the ability of the proposed parameterisation in accurately represent the radiative balance of more complex 3D schemes, a comparison between the modified two-stream approximation with the "structure factor" parameterisation and state-of-art 3D radiative transfer schemes was conducted, following a set of virtual scenarios described in the RAMI4PILPS experiment. These experiments have been evaluating the radiative balance of several models under perfectly controlled conditions in order to eliminate uncertainties arising from an incomplete or erroneous knowledge of the structural, spectral and illumination related canopy characteristics typical

Plant canopy characteristics effect on spray deposition

Science.gov (United States)

While it is common for applicators to standardize their application parameters to minimize changes in settings during a season, this practice does not necessarily provide the best delivery when targeting different types of plant canopies and different zones within the canopy. The objective of this w...

Within-canopy sesquiterpene ozonolysis in Amazonia

Science.gov (United States)

Jardine, K.; YañEz Serrano, A.; Arneth, A.; Abrell, L.; Jardine, A.; van Haren, J.; Artaxo, P.; Rizzo, L. V.; Ishida, F. Y.; Karl, T.; Kesselmeier, J.; Saleska, S.; Huxman, T.

2011-10-01

Through rapid reactions with ozone, which can initiate the formation of secondary organic aerosols, the emission of sesquiterpenes from vegetation in Amazonia may have significant impacts on tropospheric chemistry and climate. Little is known, however, about sesquiterpene emissions, transport, and chemistry within plant canopies owing to analytical difficulties stemming from very low ambient concentrations, high reactivities, and sampling losses. Here, we present ambient sesquiterpene concentration measurements obtained during the 2010 dry season within and above a primary tropical forest canopy in Amazonia. We show that by peaking at night instead of during the day, and near the ground instead of within the canopy, sesquiterpene concentrations followed a pattern different from that of monoterpenes, suggesting that unlike monoterpene emissions, which are mainly light dependent, sesquiterpene emissions are mainly temperature dependent. In addition, we observed that sesquiterpene concentrations were inversely related with ozone (with respect to time of day and vertical concentration), suggesting that ambient concentrations are highly sensitive to ozone. These conclusions are supported by experiments in a tropical rain forest mesocosm, where little atmospheric oxidation occurs and sesquiterpene and monoterpene concentrations followed similar diurnal patterns. We estimate that the daytime dry season ozone flux of -0.6 to -1.5 nmol m-2 s-1 due to in-canopy sesquiterpene reactivity could account for 7%-28% of the net ozone flux. Our study provides experimental evidence that a large fraction of total plant sesquiterpene emissions (46%-61% by mass) undergo within-canopy ozonolysis, which may benefit plants by reducing ozone uptake and its associated oxidative damage.

Specular, diffuse and polarized imagery of an oat canopy

Science.gov (United States)

Vanderbilt, Vern C.; De Venecia, Kurt J.

1988-01-01

Light, polarized by specular reflection, has been found to be an important part of the light scattered by several measured plant canopies. The authors investigate for one canopy the relative importance of specularly reflected sunlight, specularly reflected light from other sources including skylight, and diffusely upwelling light. Polarization images are used to gain increased understanding of the radiation transfer process in a plant canopy. Analysis of the results suggests that properly analyzed polarized remotely sensed data, acquired under specific atmospheric conditions by a specially designed sensor, potentially provide measures of physiological and morphological states of plants in a canopy.

Leaf Phenology of Amazonian Canopy Trees as Revealed by Spectral and Physiochemical Measurements

Science.gov (United States)

Chavana-Bryant, C.; Gerard, F. F.; Malhi, Y.; Enquist, B. J.; Asner, G. P.

2013-12-01

structural measurements (space between leaves, min. and max. season's growth and diameter) of two 1m branches harvested from each canopy level. Both leaf and canopy-level observations where collected monthly when trees where not in flush and weekly during the period of leaf flushing. Here, we present our leaf spectral and physiochemical results. Results show 1) changes in leaf spectral and physiochemical properties related to leaf age, 2) the most significant changes in the leaves' spectrum during different stages in their life cycle, and 3) how leaf spectral changes are related to changes in the chemical and physical properties of the leaves as they progress through their life cycle. Future work will involve the incorporation of leaf and canopy observations into a light canopy interaction model to investigate the possibility that seasonal variation in VIs may be driven by leaf aging as well as by the shedding or appearance of new leaves.

BOREAS TE-9 NSA Canopy Biochemistry

Science.gov (United States)

Hall, Forrest G. (Editor); Curd, Shelaine (Editor); Margolis, Hank; Charest, Martin; Sy, Mikailou

2000-01-01

The BOREAS TE-9 team collected several data sets related to chemical and photosynthetic properties of leaves. This data set contains canopy biochemistry data collected in 1994 in the NSA at the YJP, OJR, OBS, UBS, and OA sites, including biochemistry lignin, nitrogen, cellulose, starch, and fiber concentrations. These data were collected to study the spatial and temporal changes in the canopy biochemistry of boreal forest cover types and how a high-resolution radiative transfer model in the mid-infrared could be applied in an effort to obtain better estimates of canopy biochemical properties using remote sensing. The data are available in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Modeling canopy-induced turbulence in the Earth system: a unified parameterization of turbulent exchange within plant canopies and the roughness sublayer (CLM-ml v0

Directory of Open Access Journals (Sweden)

G. B. Bonan

2018-04-01

Full Text Available Land surface models used in climate models neglect the roughness sublayer and parameterize within-canopy turbulence in an ad hoc manner. We implemented a roughness sublayer turbulence parameterization in a multilayer canopy model (CLM-ml v0 to test if this theory provides a tractable parameterization extending from the ground through the canopy and the roughness sublayer. We compared the canopy model with the Community Land Model (CLM4.5 at seven forest, two grassland, and three cropland AmeriFlux sites over a range of canopy heights, leaf area indexes, and climates. CLM4.5 has pronounced biases during summer months at forest sites in midday latent heat flux, sensible heat flux, gross primary production, nighttime friction velocity, and the radiative temperature diurnal range. The new canopy model reduces these biases by introducing new physics. Advances in modeling stomatal conductance and canopy physiology beyond what is in CLM4.5 substantially improve model performance at the forest sites. The signature of the roughness sublayer is most evident in nighttime friction velocity and the diurnal cycle of radiative temperature, but is also seen in sensible heat flux. Within-canopy temperature profiles are markedly different compared with profiles obtained using Monin–Obukhov similarity theory, and the roughness sublayer produces cooler daytime and warmer nighttime temperatures. The herbaceous sites also show model improvements, but the improvements are related less systematically to the roughness sublayer parameterization in these canopies. The multilayer canopy with the roughness sublayer turbulence improves simulations compared with CLM4.5 while also advancing the theoretical basis for surface flux parameterizations.

A meta-analysis of leaf nitrogen distribution within plant canopies

NARCIS (Netherlands)

Hikosaka, Kouki; Anten, Niels P.R.; Borjigidai, Almaz; Kamiyama, Chiho; Sakai, Hidemitsu; Hasegawa, Toshihiro; Oikawa, Shimpei; Iio, Atsuhiro; Watanabe, Makoto; Koike, Takayoshi; Nishina, Kazuya; Ito, Akihiko

2016-01-01

Background and aims Leaf nitrogen distribution in the plant canopy is an important determinant for canopy photosynthesis. Although the gradient of leaf nitrogen is formed along light gradients in the canopy, its quantitative variations among species and environmental responses remain unknown.

Mechanistic study of aerosol dry deposition on vegetated canopies; Etude mecaniste du depot sec d'aerosols sur les couverts vegetaux

Energy Technology Data Exchange (ETDEWEB)

Petroff, A

2005-04-15

The dry deposition of aerosols onto vegetated canopies is modelled through a mechanistic approach. The interaction between aerosols and vegetation is first formulated by using a set of parameters, which are defined at the local scale of one surface. The overall deposition is then deduced at the canopy scale through an up-scaling procedure based on the statistic distribution parameters. This model takes into account the canopy structural and morphological properties, and the main characteristics of the turbulent flow. Deposition mechanisms considered are Brownian diffusion, interception, initial and turbulent impaction, initially with coniferous branches and then with entire canopies of different roughness, such as grass, crop field and forest. (author)

Evaluation of one dimensional analytical models for vegetation canopies

Science.gov (United States)

Goel, Narendra S.; Kuusk, Andres

1992-01-01

The SAIL model for one-dimensional homogeneous vegetation canopies has been modified to include the specular reflectance and hot spot effects. This modified model and the Nilson-Kuusk model are evaluated by comparing the reflectances given by them against those given by a radiosity-based computer model, Diana, for a set of canopies, characterized by different leaf area index (LAI) and leaf angle distribution (LAD). It is shown that for homogeneous canopies, the analytical models are generally quite accurate in the visible region, but not in the infrared region. For architecturally realistic heterogeneous canopies of the type found in nature, these models fall short. These shortcomings are quantified.

Observations of the scale-dependent turbulence and evaluation of the flux–gradient relationship for sensible heat for a closed Douglas-fir canopy in very weak wind conditions

Directory of Open Access Journals (Sweden)

D. Vickers

2014-09-01

Full Text Available Observations of the scale-dependent turbulent fluxes, variances, and the bulk transfer parameterization for sensible heat above, within, and beneath a tall closed Douglas-fir canopy in very weak winds are examined. The daytime sub-canopy vertical velocity spectra exhibit a double-peak structure with peaks at timescales of 0.8 s and 51.2 s. A double-peak structure is also observed in the daytime sub-canopy heat flux co-spectra. The daytime momentum flux co-spectra in the upper bole space and in the sub-canopy are characterized by a relatively large cross-wind component, likely due to the extremely light and variable winds, such that the definition of a mean wind direction, and subsequent partitioning of the momentum flux into along- and cross-wind components, has little physical meaning. Positive values of both momentum flux components in the sub-canopy contribute to upward transfer of momentum, consistent with the observed sub-canopy secondary wind speed maximum. For the smallest resolved scales in the canopy at nighttime, we find increasing vertical velocity variance with decreasing timescale, consistent with very small eddies possibly generated by wake shedding from the canopy elements that transport momentum, but not heat. Unusually large values of the velocity aspect ratio within the canopy were observed, consistent with enhanced suppression of the horizontal wind components compared to the vertical by the very dense canopy. The flux–gradient approach for sensible heat flux is found to be valid for the sub-canopy and above-canopy layers when considered separately in spite of the very small fluxes on the order of a few W m−2 in the sub-canopy. However, single-source approaches that ignore the canopy fail because they make the heat flux appear to be counter-gradient when in fact it is aligned with the local temperature gradient in both the sub-canopy and above-canopy layers. While sub-canopy Stanton numbers agreed well with values

Testing the Application of Terrestrial Laser Scanning to Measure Forest Canopy Gap Fraction

Directory of Open Access Journals (Sweden)

F. Mark Danson

2013-06-01

Full Text Available Terrestrial laser scanners (TLS have the potential to revolutionise measurement of the three-dimensional structure of vegetation canopies for applications in ecology, hydrology and climate change. This potential has been the subject of recent research that has attempted to measure forest biophysical variables from TLS data, and make comparisons with two-dimensional data from hemispherical photography. This research presents a systematic comparison between forest canopy gap fraction estimates derived from TLS measurements and hemispherical photography. The TLS datasets used in the research were obtained between April 2008 and March 2009 at Delamere Forest, Cheshire, UK. The analysis of canopy gap fraction estimates derived from TLS data highlighted the repeatability and consistency of the measurements in comparison with those from coincident hemispherical photographs. The comparison also showed that estimates computed considering only the number of hits and misses registered in the TLS datasets were consistently lower than those estimated from hemispherical photographs. To examine this difference, the potential information available in the intensity values recorded by TLS was investigated and a new method developed to estimate canopy gap fraction proposed. The new approach produced gap fractions closer to those estimated from hemispherical photography, but the research also highlighted the limitations of single return TLS data for this application.

Canopy sink-source partitioning influences root/soil respiration in apple

Science.gov (United States)

The root system of plants derives all its energy from photosynthate translocated from the canopy to the root system. Canopy manipulations that alter either the rate of canopy photosynthesis or the translocation of photosynthate are expected to alter dry matter partitioning to the root system. Fiel...

Grazing management strategies for massaigrass-forage peanut pastures: 1. dynamics of sward condition and botanical composition Estratégias de manejo do pastejo para pastos consorciados de capim-massai e amendoim forrageiro: 1. dinâmica da condição do pasto e da composição botânica

Directory of Open Access Journals (Sweden)

Carlos Mauricio Soares de Andrade

2006-04-01

Full Text Available This study was carried out from October 2002 to December 2003 to evaluate the dynamics of sward condition and botanical composition of a mixed massaigrass (Panicum maximum x P. infestum, cv. Massai and forage peanut (Arachis pintoi Ac 01 pasture, intermittently stocked at three daily herbage allowance levels (9.0, 14.5 and 18.4% live weight. Sward condition was characterized in each grazing cycle in terms of the pre and post-grazing sward height, forage mass and percentage of bare ground. Botanical composition (grass, legume and weeds was evaluated before each grazing period. Sward height and forage mass increased linearly with increasing herbage allowance (HA levels, and higher values were observed during the rainy season. Percentage of bare ground increased primarily at the lowest HA level. Percentage of forage peanut increased throughout the experimental period, primarily in the barest and shortest swards, under the lowest HA level. In the last quarter of 2003 the legume constituted 23.5, 10.6 and 6.4% of the pasture forage mass, respectively, from the lowest to the highest HA level. These results suggest that forage peanut can be successfully associated with massaigrass, as long as the pre-grazing sward height is maintained shorter than 65-70 cm, which will prevent excessive shading to the legume.Este estudo foi realizado com o objetivo de avaliar a dinâmica e a composição botânica de uma pastagem consorciada de capim-massai (Panicum maximum x P. infestum, cv. Massai e amendoim forrageiro (Arachis pintoi Ac 01, manejada sob lotação rotacionada em três níveis de oferta diária de forragem (9,0; 14,5 e 18,4% do peso vivo. A condição da pastagem foi caracterizada em cada ciclo de pastejo, em termos de altura, massa de forragem e porcentagem de solo descoberto (pré e pós-pastejo. A composição botânica da pastagem (gramínea, leguminosa e invasoras foi monitorada antes de cada período de ocupação. Houve aumento linear da altura

Impact of Canopy Openness on Spider Communities: Implications for Conservation Management of Formerly Coppiced Oak Forests.

Directory of Open Access Journals (Sweden)

Ondřej Košulič

Full Text Available Traditional woodland management created a mosaic of differently aged patches providing favorable conditions for a variety of arthropods. After abandonment of historical ownership patterns and traditional management and the deliberate transformation to high forest after World War II, large forest areas became darker and more homogeneous. This had significant negative consequences for biodiversity. An important question is whether even small-scale habitat structures maintained by different levels of canopy openness in abandoned coppiced forest may constitute conditions suitable for forest as well as open habitat specialists. We investigated the effect of canopy openness in former traditionally coppiced woodlands on the species richness, functional diversity, activity density, conservation value, and degree of rareness of epigeic spiders. In each of the eight studied locations, 60-m-long transect was established consisting of five pitfall traps placed at regular 15 m intervals along the gradient. Spiders were collected from May to July 2012. We recorded 90 spider species, including high proportions of xeric specialists (40% and red-listed threatened species (26%. The peaks of conservation indicators, as well as spider community abundance, were shifted toward more open canopies. On the other hand, functional diversity peaked at more closed canopies followed by a rapid decrease with increasing canopy openness. Species richness was highest in the middle of the canopy openness gradient, suggesting an ecotone effect. Ordinations revealed that species of conservation concern tended to be associated with sparse and partly opened canopy. The results show that the various components of biodiversity peaked at different levels of canopy openness. Therefore, the restoration and suitable forest management of such conditions will retain important diversification of habitats in formerly coppiced oak forest stands. We indicate that permanent presence of small

3D Surface Temperature Measurement of Plant Canopies Using Photogrammetry Techniques From A UAV.

Science.gov (United States)

Irvine, M.; Lagouarde, J. P.

2017-12-01

Surface temperature of plant canopies and within canopies results from the coupling of radiative and energy exchanges processes which govern the fluxes at the interface soil-plant-atmosphere. As a key parameter, surface temperature permits the estimation of canopy exchanges using processes based modeling methods. However detailed 3D surface temperature measurements or even profile surface temperature measurements are rarely made as they have inherent difficulties. Such measurements would greatly improve multi-level canopy models such as NOAH (Chen and Dudhia 2001) or MuSICA (Ogée and Brunet 2002, Ogée et al 2003) where key surface temperature estimations, at present, are not tested. Additionally, at larger scales, canopy structure greatly influences satellite based surface temperature measurements as the structure impacts the observations which are intrinsically made at varying satellite viewing angles and solar heights. In order to account for these differences, again accurate modeling is required such as through the above mentioned multi-layer models or with several source type models such as SCOPE (Van der Tol 2009) in order to standardize observations. As before, in order to validate these models, detailed field observations are required. With the need for detailed surface temperature observations in mind we have planned a series of experiments over non-dense plant canopies to investigate the use of photogrammetry techniques. Photogrammetry is normally used for visible wavelengths to produce 3D images using cloud point reconstruction of aerial images (for example Dandois and Ellis, 2010, 2013 over a forest). From these cloud point models it should be possible to establish 3D plant surface temperature images when using thermal infrared array sensors. In order to do this our experiments are based on the use of a thermal Infrared camera embarked on a UAV. We adapt standard photogrammetry to account for limits imposed by thermal imaginary, especially the low

Simulation of Canopy CO2/H2O Fluxes for a Rubber (Hevea Brasiliensis) Plantation in Central Cambodia: The Effect of the Regular Spacing of Planted Trees

Energy Technology Data Exchange (ETDEWEB)

Kumagai, Tomo' omi; Mudd, Ryan; Miyazawa, Yoshiyuki; Liu, Wen; Giambelluca, Thomas; Kobayashi, N.; Lim, Tiva Khan; Jomura, Mayuko; Matsumoto, Kazuho; Huang, Maoyi; Chen, Qi; Ziegler, Alan; Yin, Song

2013-09-10

We developed a soil-vegetation-atmosphere transfer (SVAT) model applicable to simulating CO2 and H2O fluxes from the canopies of rubber plantations, which are characterized by distinct canopy clumping produced by regular spacing of plantation trees. Rubber (Hevea brasiliensis Müll. Arg.) plantations, which are rapidly expanding into both climatically optimal and sub-optimal environments throughout mainland Southeast Asia, potentially change the partitioning of water, energy, and carbon at multiple scales, compared with traditional land covers it is replacing. Describing the biosphere-atmosphere exchange in rubber plantations via SVAT modeling is therefore essential to understanding the impacts on environmental processes. The regular spacing of plantation trees creates a peculiar canopy structure that is not well represented in most SVAT models, which generally assumes a non-uniform spacing of vegetation. Herein we develop a SVAT model applicable to rubber plantation and an evaluation method for its canopy structure, and examine how the peculiar canopy structure of rubber plantations affects canopy CO2 and H2O exchanges. Model results are compared with measurements collected at a field site in central Cambodia. Our findings suggest that it is crucial to account for intensive canopy clumping in order to reproduce observed rubber plantation fluxes. These results suggest a potentially optimal spacing of rubber trees to produce high productivity and water use efficiency.

Application of two-stream model to solar radiation of rice canopy

International Nuclear Information System (INIS)

Kawakata, T.

2005-01-01

The amount of solar radiation absorbed by a crop canopy is correlated with crop production, and thus it is necessary to estimate both transmission and reflection around the canopy for crop growth models. The 'forward and backward streams' representation of radiation has been refined to account for both transmission and reflection in the crop canopy. However, this model has not been applied to a rice canopy through the growing period. The purpose of this study is to examine whether the two-stream model is applicable to the rice canopy, and to investigate the parameters of the model. The values for both transmittance below the rice canopy and reflectance above it that were derived from the two-stream model represent the observed values throughout the growing period. The inclination factor of leaves (F), which is used in the two-stream model, was almost equivalent to the extinction coefficient of transmittance in the case of the rice canopy

Modeling marbled murrelet (Brachyramphus marmoratus) habitat using LiDAR-derived canopy data

Science.gov (United States)

Hagar, Joan C.; Eskelson, Bianca N.I.; Haggerty, Patricia K.; Nelson, S. Kim; Vesely, David G.

2014-01-01

LiDAR (Light Detection And Ranging) is an emerging remote-sensing tool that can provide fine-scale data describing vertical complexity of vegetation relevant to species that are responsive to forest structure. We used LiDAR data to estimate occupancy probability for the federally threatened marbled murrelet (Brachyramphus marmoratus) in the Oregon Coast Range of the United States. Our goal was to address the need identified in the Recovery Plan for a more accurate estimate of the availability of nesting habitat by developing occupancy maps based on refined measures of nest-strand structure. We used murrelet occupancy data collected by the Bureau of Land Management Coos Bay District, and canopy metrics calculated from discrete return airborne LiDAR data, to fit a logistic regression model predicting the probability of occupancy. Our final model for stand-level occupancy included distance to coast, and 5 LiDAR-derived variables describing canopy structure. With an area under the curve value (AUC) of 0.74, this model had acceptable discrimination and fair agreement (Cohen's κ = 0.24), especially considering that all sites in our sample were regarded by managers as potential habitat. The LiDAR model provided better discrimination between occupied and unoccupied sites than did a model using variables derived from Gradient Nearest Neighbor maps that were previously reported as important predictors of murrelet occupancy (AUC = 0.64, κ = 0.12). We also evaluated LiDAR metrics at 11 known murrelet nest sites. Two LiDAR-derived variables accurately discriminated nest sites from random sites (average AUC = 0.91). LiDAR provided a means of quantifying 3-dimensional canopy structure with variables that are ecologically relevant to murrelet nesting habitat, and have not been as accurately quantified by other mensuration methods.

Simulated transient thermal infrared emissions of forest canopies during rainfall events

Science.gov (United States)

Ballard, Jerrell R.; Hawkins, William R.; Howington, Stacy E.; Kala, Raju V.

2017-05-01

We describe the development of a centimeter-scale resolution simulation framework for a theoretical tree canopy that includes rainfall deposition, evaporation, and thermal infrared emittance. Rainfall is simulated as discrete raindrops with specified rate. The individual droplets will either fall through the canopy and intersect the ground; adhere to a leaf; bounce or shatter on impact with a leaf resulting in smaller droplets that are propagated through the canopy. Surface physical temperatures are individually determined by surface water evaporation, spatially varying within canopy wind velocities, solar radiation, and water vapor pressure. Results are validated by theoretical canopy gap and gross rainfall interception models.

Rotor Systems Research Aircraft /RSRA/ canopy explosive severance/fracture

Science.gov (United States)

Bement, L. J.

1976-01-01

The Rotor Systems Research Aircraft (RSRA), a compound rotor/fixed-wing aircraft, incorporates an emergency escape system for the three crew members; to achieve unobstructed egress, the overhead acrylic canopies of each crew member will be explosively severed and fractured into predictably small, low-mass pieces. A canopy explosive severance/fracture system was developed under this investigation that included the following system design considerations: selection of canopy and explosive materials, determining the acrylic's explosive severance and fracture characteristics, evaluating the effects of installation variables and temperature, determining the most effective explosive patterns, conducting full-scale, flat and double-curvature canopy tests, and evaluating the effects of back-blast of the explosive into the cockpit.

NLCD 2001 - Tree Canopy

Data.gov (United States)

Minnesota Department of Natural Resources — The National Land Cover Database 2001 tree canopy layer for Minnesota (mapping zones 39-42, 50-51) was produced through a cooperative project conducted by the...

Quantifying interception associated with new urban vegetation canopies

Science.gov (United States)

Yerk, W.; Montalto, F. A.

2013-12-01

Interception of precipitation by vegetation canopies has long been recognized as an important component of the hydrologic cycle, though most research has been in closed or sparse canopy forests. Much less work has been published on interception by urban vegetation, and especially associated with the low growing shrubs commonly installed in green infrastructure program. To inform urban watershed model with vegetation-specific interception data, a field experiment was designed to directly measure canopy throughfall associated with two shrub species commonly included in urban greening programs. Data was collected at a high (e.g. five second) sampling frequency. A non-parametric Kruskal-Wallis test performed on data collected between August and October of 2012 demonstrated statistically significant (p= 0.0011) differences in recorded throughfall between two species (94% for Itea virginica, 86% for Cornus sericea). Additionally, the results suggested that the relationship of throughfall to rainfall intensity varied by species. For Itea, the ratio of throughfall to precipitation intensity was close to 1:1. However, for Cornus, the throughfall rate was on average slower (or 0.85 of the precipitation intensity). An improved and expanded set-up installed in 2013 added two additional species (Prunus laurocerasus and Hydrangea quercifolia). The 2013 results confirm interspecies differences in both throughfall amount, and in the relationship of throughfall rate to precipitation intensity. The results are discussed with respect to droplet splashing and enhanced evaporation within the canopy. Both years' findings suggest that the quantity of water intercepted by vegetation canopies exceeds the canopy storage capacity, as assumed in many conventional hydrologic models.

Amazon forest carbon dynamics predicted by profiles of canopy leaf area and light environment

Science.gov (United States)

S. C. Stark; V. Leitold; J. L. Wu; M. O. Hunter; C. V. de Castilho; F. R. C. Costa; S. M. McMahon; G. G. Parker; M. Takako Shimabukuro; M. A. Lefsky; M. Keller; L. F. Alves; J. Schietti; Y. E. Shimabukuro; D. O. Brandao; T. K. Woodcock; N. Higuchi; P. B de Camargo; R. C. de Oliveira; S. R. Saleska

2012-01-01

Tropical forest structural variation across heterogeneous landscapes may control above-ground carbon dynamics. We tested the hypothesis that canopy structure (leaf area and light availability) – remotely estimated from LiDAR – control variation in above-ground coarse wood production (biomass growth). Using a statistical model, these factors predicted biomass growth...

Ground based remote sensing and physiological measurements provide novel insights into canopy photosynthetic optimization in arctic shrubs

Science.gov (United States)

Magney, T. S.; Griffin, K. L.; Boelman, N.; Eitel, J.; Greaves, H.; Prager, C.; Logan, B.; Oliver, R.; Fortin, L.; Vierling, L. A.

2014-12-01

Because changes in vegetation structure and function in the Arctic are rapid and highly dynamic phenomena, efforts to understand the C balance of the tundra require repeatable, objective, and accurate remote sensing methods for estimating aboveground C pools and fluxes over large areas. A key challenge addressing the modelling of aboveground C is to utilize process-level information from fine-scale studies. Utilizing information obtained from high resolution remote sensing systems could help to better understand the C source/sink strength of the tundra, which will in part depend on changes in photosynthesis resulting from the partitioning of photosynthetic machinery within and among deciduous shrub canopies. Terrestrial LiDAR and passive hyperspectral remote sensing measurements offer an effective, repeatable, and scalable method to understand photosynthetic performance and partitioning at the canopy scale previously unexplored in arctic systems. Using a 3-D shrub canopy model derived from LiDAR, we quantified the light regime of leaves within shrub canopies to gain a better understanding of how light interception varies in response to the Arctic's complex radiation regime. This information was then coupled with pigment sampling (i.e., xanthophylls, and Chl a/b) to evaluate the optimization of foliage photosynthetic capacity within shrub canopies due to light availability. In addition, a lab experiment was performed to validate evidence of canopy level optimization via gradients of light intensity and leaf light environment. For this, hyperspectral reflectance (photochemical reflectance index (PRI)), and solar induced fluorescence (SIF)) was collected in conjunction with destructive pigment samples (xanthophylls) and chlorophyll fluorescence measurements in both sunlit and shaded canopy positions.

Forest canopy BRDF simulation using Monte Carlo method

NARCIS (Netherlands)

Huang, J.; Wu, B.; Zeng, Y.; Tian, Y.

2006-01-01

Monte Carlo method is a random statistic method, which has been widely used to simulate the Bidirectional Reflectance Distribution Function (BRDF) of vegetation canopy in the field of visible remote sensing. The random process between photons and forest canopy was designed using Monte Carlo method.

Relationship between LiDAR-derived forest canopy height and Landsat images

Science.gov (United States)

Cristina Pascual; Antonio Garcia-Abril; Warren B. Cohen; Susana. Martin-Fernandez

2010-01-01

The mean and standard deviation (SD) of light detection and ranging (LiDAR)-derived canopy height are related to forest structure. However, LiDAR data typically cover a limited area and have a high economic cost compared with satellite optical imagery. Optical images may be required to extrapolate LiDAR height measurements across a broad landscape. Different spectral...

Interpretation of Upper-Storey Canopy Area in Subtropical Broad-leaved Forests in Okinawa Island Using Laser Scanning Data

International Nuclear Information System (INIS)

Noor Janatun Naim Jemali; Shiba, M.; Azita Ahmad Zawawi; Noor Janatun Naim Jemali

2015-01-01

Conventional forest inventory practice took huge of effort, and is time- and cost- consuming. With the aid of remote sensing technology by light detection and ranging (LiDAR), those unbearable factors could be minimized. LiDAR is able to capture forest characteristic information and is well known for estimating forest structure accurately in many studies. Forest monitoring related to forest resource inventory (FRI) becomes more effective by utilizing LiDAR data and it is tremendously useful, especially to distinguish information on density, growth and distribution of trees in a selected area. In this study, LiDAR data was utilized aimed to delineate crown cover and estimate upper-storey canopy area in Yambaru Forest using object-based segmentation and classification techniques. Agreement between field survey and LiDAR data analysis showed that only 33.7 % of upper-storey canopy area was successfully delineated. The low accuracy level of canopy detection in Yambaru Forest area was expected mainly due to tree structure, density and topographic condition. (author)

Simulating fluorescence light-canopy interaction in support of laser-induced fluorescence measurements

International Nuclear Information System (INIS)

Rosema, A.; Verhoef, W.; Schroote, J.; Snel, J.F.H.

1991-01-01

In the Netherlands an operational field instrument for the measurement of laser induced fluorescence of vegetation (LEAF) is developed. In addition, plant physiological and remote sensing research is done to support this new remote sensing instrument. This paper presents a general introduction on the subject of laser-induced fluorescence, including the relation between chlorophyll fluorescence and photosynthesis, spectral characteristics, and previous research. Also the LEAF system is briefly described. Subsequently, the development of a leaf fluorescence model (KMF) and a canopy fluorescence model (FLSAIL) are reported. With these simulation models a sensitivity study is carried out. Fluorescence of 685 nm appears to be most suitable to obtain information on photosynthesis and stress, but is also influenced by canopy structure. Separation of these two effects is studied

Co-optimal distribution of leaf nitrogen and hydraulic conductance in plant canopies.

Science.gov (United States)

Peltoniemi, Mikko S; Duursma, Remko A; Medlyn, Belinda E

2012-05-01

Leaf properties vary significantly within plant canopies, due to the strong gradient in light availability through the canopy, and the need for plants to use resources efficiently. At high light, photosynthesis is maximized when leaves have a high nitrogen content and water supply, whereas at low light leaves have a lower requirement for both nitrogen and water. Studies of the distribution of leaf nitrogen (N) within canopies have shown that, if water supply is ignored, the optimal distribution is that where N is proportional to light, but that the gradient of N in real canopies is shallower than the optimal distribution. We extend this work by considering the optimal co-allocation of nitrogen and water supply within plant canopies. We developed a simple 'toy' two-leaf canopy model and optimized the distribution of N and hydraulic conductance (K) between the two leaves. We asked whether hydraulic constraints to water supply can explain shallow N gradients in canopies. We found that the optimal N distribution within plant canopies is proportional to the light distribution only if hydraulic conductance, K, is also optimally distributed. The optimal distribution of K is that where K and N are both proportional to incident light, such that optimal K is highest to the upper canopy. If the plant is constrained in its ability to construct higher K to sun-exposed leaves, the optimal N distribution does not follow the gradient in light within canopies, but instead follows a shallower gradient. We therefore hypothesize that measured deviations from the predicted optimal distribution of N could be explained by constraints on the distribution of K within canopies. Further empirical research is required on the extent to which plants can construct optimal K distributions, and whether shallow within-canopy N distributions can be explained by sub-optimal K distributions.

Investigating the Relationships between Canopy Characteristics and Snow Depth Distribution at Fine Scales: Preliminary Results from the SnowEX TLS Campaign

Science.gov (United States)

Glenn, N. F.; Uhlmann, Z.; Spaete, L.; Tennant, C.; Hiemstra, C. A.; McNamara, J.

2017-12-01

Predicting changes in forested seasonal snowpacks under altered climate scenarios is one of the most pressing hydrologic challenges facing today's society. Airborne- and satellite-based remote sensing methods hold the potential to transform measurements of terrestrial water stores in snowpack, improve process representations of snowpack accumulation and ablation, and to generate high quality predictions that inform potential strategies to better manage water resources. While the effects of forest on snowpack are well documented, many of the fine-scale processes influenced by the forest-canopy are not directly accounted for because most snow models don't explicitly represent canopy structure and canopy heterogeneity. This study investigates the influence of forest canopy on snowpack distribution at fine scales and quantifies the influence of canopy heterogeneity on snowpack accumulation and ablation processes. We use terrestrial laser scanning (TLS) data collected during the SnowEX campaign to discover how the relationships between canopy and snow distributions change across scales. Our sample scales range from individual trees to patches of trees across the Grand Mesa, CO, SnowEx site.

[Estimation of forest canopy chlorophyll content based on PROSPECT and SAIL models].

Science.gov (United States)

Yang, Xi-guang; Fan, Wen-yi; Yu, Ying

2010-11-01

The forest canopy chlorophyll content directly reflects the health and stress of forest. The accurate estimation of the forest canopy chlorophyll content is a significant foundation for researching forest ecosystem cycle models. In the present paper, the inversion of the forest canopy chlorophyll content was based on PROSPECT and SAIL models from the physical mechanism angle. First, leaf spectrum and canopy spectrum were simulated by PROSPECT and SAIL models respectively. And leaf chlorophyll content look-up-table was established for leaf chlorophyll content retrieval. Then leaf chlorophyll content was converted into canopy chlorophyll content by Leaf Area Index (LAD). Finally, canopy chlorophyll content was estimated from Hyperion image. The results indicated that the main effect bands of chlorophyll content were 400-900 nm, the simulation of leaf and canopy spectrum by PROSPECT and SAIL models fit better with the measured spectrum with 7.06% and 16.49% relative error respectively, the RMSE of LAI inversion was 0. 542 6 and the forest canopy chlorophyll content was estimated better by PROSPECT and SAIL models with precision = 77.02%.

CFD modelling and wind tunnel validation of airflow through plant canopies using 3D canopy architecture

International Nuclear Information System (INIS)

Endalew, A. Melese; Hertog, M.; Delele, M.A.; Baetens, K.; Persoons, T.; Baelmans, M.; Ramon, H.; Nicolai, B.M.; Verboven, P.

2009-01-01

The efficiency of pesticide application to agricultural fields and the resulting environmental contamination highly depend on atmospheric airflow. A computational fluid dynamics (CFD) modelling of airflow within plant canopies using 3D canopy architecture was developed to understand the effect of the canopy to airflow. The model average air velocity was validated using experimental results in a wind tunnel with two artificial model trees of 24 cm height. Mean air velocities and their root mean square (RMS) values were measured on a vertical plane upstream and downstream sides of the trees in the tunnel using 2D hotwire anemometer after imposing a uniform air velocity of 10 m s -1 at the inlet. 3D virtual canopy geometries of the artificial trees were modelled and introduced into a computational fluid domain whereby airflow through the trees was simulated using Reynolds-Averaged Navier-Stokes (RANS) equations and k-ε turbulence model. There was good agreement of the average longitudinal velocity, U between the measurements and the simulation results with relative errors less than 2% for upstream and 8% for downstream sides of the trees. The accuracy of the model prediction for turbulence kinetic energy k and turbulence intensity I was acceptable within the tree height when using a roughness length (y 0 = 0.02 mm) for the surface roughness of the tree branches and by applying a source model in a porous sub-domain created around the trees. The approach was applied for full scale orchard trees in the atmospheric boundary layer (ABL) and was compared with previous approaches and works. The simulation in the ABL was made using two groups of full scale orchard trees; short (h = 3 m) with wider branching and long (h = 4 m) with narrow branching. This comparison showed good qualitative agreements on the vertical profiles of U with small local differences as expected due to the spatial disparities in tree architecture. This work was able to show airflow within and above the

Response of Boreal forest tree canopy cover to chronic gamma irradiation

International Nuclear Information System (INIS)

Amiro, B.D.

1994-01-01

A section of the Canadian Boreal forest was irradiated chronically by a point source of 137 Cs from 1973 to 1986. Tree canopy cover was measured at permanently marked locations during the pre-irradiation, irradiation and post-irradiation phases, spanning a period of two decades. The tree canopy was severely affected at dose rates greater than 10 mGy/h delivered chronically. The canopy of sensitive coniferous tree species, such as Abies balsamea and Picea Mariana, decreased at dose rates greater than 2 mGy/h, but in some cases the tree canopy was replaced by more resistant species, such as Populus tremuloides and Salix bebbiana. Effects on canopy cover could not be detected at dose rates less than 0.1 mGy/h. Even at dose rates of 5 mGy/h, the forest canopy is recovering six years after irradiation stopped. (author)

Predicting tropical plant physiology from leaf and canopy spectroscopy.

Science.gov (United States)

Doughty, Christopher E; Asner, Gregory P; Martin, Roberta E

2011-02-01

A broad regional understanding of tropical forest leaf photosynthesis has long been a goal for tropical forest ecologists, but it has remained elusive due to difficult canopy access and high species diversity. Here we develop an empirical model to predict sunlit, light-saturated, tropical leaf photosynthesis using leaf and simulated canopy spectra. To develop this model, we used partial least squares (PLS) analysis on three tropical forest datasets (159 species), two in Hawaii and one at the biosphere 2 laboratory (B2L). For each species, we measured light-saturated photosynthesis (A), light and CO(2) saturated photosynthesis (A(max)), respiration (R), leaf transmittance and reflectance spectra (400-2,500 nm), leaf nitrogen, chlorophyll a and b, carotenoids, and leaf mass per area (LMA). The model best predicted A [r(2) = 0.74, root mean square error (RMSE) = 2.9 μmol m(-2) s(-1))] followed by R (r(2) = 0.48), and A(max) (r(2) = 0.47). We combined leaf reflectance and transmittance with a canopy radiative transfer model to simulate top-of-canopy reflectance and found that canopy spectra are a better predictor of A (RMSE = 2.5 ± 0.07 μmol m(-2) s(-1)) than are leaf spectra. The results indicate the potential for this technique to be used with high-fidelity imaging spectrometers to remotely sense tropical forest canopy photosynthesis.

Modeling hemispherical and directional radiative fluxes in regular-clumped canopies

International Nuclear Information System (INIS)

Begue, A.

1992-01-01

A model of radiative transfer in regular-clumped canopies is presented. The canopy is approximated by an array of porous cylinders located at the vertices of equilateral triangles. The model is split into two submodels, each describing a different level of structure: 1) The macrostructure submodel is based on Brown and Pandolfo (1969), who applied geometrical optics theory to an array of opaque cylinders. This model is adapted for porous cylinders and is used to derive expressions for directional interception efficiency as a function of height, radius, spacing and porosity of the cylinders. 2) The microstructure submodel makes use of the average canopy transmittance theory, applied to a cylinder, to compute the porosity of the clumps as a function of the leaf area density, the leaf inclination distribution function, the dimensions of the cylinder (height and radius), and the transmittance of green leaves in the appropriate spectral band. It is shown that, in the case of erectophile plant stands, the daily porosity of the cylinder can be approximated by the porosity calculated using the extinction coefficient of diffuse radiation. Directional interception efficiency, geometric conditions (incidence/viewing), and landscape component reflectances are used to compute hemispherical (interception, absorption, and reflectance) and directional (reflectance) radiative fluxes from simple analytical formulae. This model is validated against a data set of biological, radiative (PAR region) and radiometric (SPOT channels) measurements, collected in Niger on pearl millet (Pennisetum typhoides). The model fits the data quite well in terms of hourly and daily single-band or combined (NDVI) radiative fluxes. Close correspondence to measured fluxes, using few parameters, and the possibility of inversion makes the present model a valuable tool for the study of radiative transfer in discontinuous canopies. (author)

Modeling canopy-level productivity: is the "big-leaf" simplification acceptable?

Science.gov (United States)

Sprintsin, M.; Chen, J. M.

2009-05-01

The "big-leaf" approach to calculating the carbon balance of plant canopies assumes that canopy carbon fluxes have the same relative responses to the environment as any single unshaded leaf in the upper canopy. Widely used light use efficiency models are essentially simplified versions of the big-leaf model. Despite its wide acceptance, subsequent developments in the modeling of leaf photosynthesis and measurements of canopy physiology have brought into question the assumptions behind this approach showing that big leaf approximation is inadequate for simulating canopy photosynthesis because of the additional leaf internal control on carbon assimilation and because of the non-linear response of photosynthesis on leaf nitrogen and absorbed light, and changes in leaf microenvironment with canopy depth. To avoid this problem a sunlit/shaded leaf separation approach, within which the vegetation is treated as two big leaves under different illumination conditions, is gradually replacing the "big-leaf" strategy, for applications at local and regional scales. Such separation is now widely accepted as a more accurate and physiologically based approach for modeling canopy photosynthesis. Here we compare both strategies for Gross Primary Production (GPP) modeling using the Boreal Ecosystem Productivity Simulator (BEPS) at local (tower footprint) scale for different land cover types spread over North America: two broadleaf forests (Harvard, Massachusetts and Missouri Ozark, Missouri); two coniferous forests (Howland, Maine and Old Black Spruce, Saskatchewan); Lost Creek shrubland site (Wisconsin) and Mer Bleue petland (Ontario). BEPS calculates carbon fixation by scaling Farquhar's leaf biochemical model up to canopy level with stomatal conductance estimated by a modified version of the Ball-Woodrow-Berry model. The "big-leaf" approach was parameterized using derived leaf level parameters scaled up to canopy level by means of Leaf Area Index. The influence of sunlit

Evaporation and the sub-canopy energy environment in a flooded forest

Science.gov (United States)

The combination of canopy cover and a free water surface makes the sub-canopy environment of flooded forested wetlands unlike other aquatic or terrestrial systems. The sub-canopy vapor flux and energy budget are not well understood in wetlands, but they importantly control water level and understory...

[Effects of canopy density on the functional group of soil macro fauna in Pinus massoniana plantations].

Science.gov (United States)

Zhou, Hong Yang; Zhang, Dan Ju; Zhang, Jie; Zhao, Yan Bo; Zhao, Bo; Wei, Da Ping; Zhang, Jian

2017-06-18

In order to understand the effects of canopy density on the functional group characteristics of soil macrofauna in Pinus massoniana plantations, we divided the captured soil fauna into five types including xylophages, predators, saprophages, omnivores and fungal feeders. The results showed that 1) Saprozoic feeders had the highest percentage of total individuals, and the omnivores and xylophages occupied higher percentages of total taxa. 2) The individual and group number of the predators, and the group number of xylophages did not change significantly under 0.5-0.6 and then decreased significantly under 0.6-0.9 canopy density. 3) With the increasing canopy density, the individual an dgroup number of predators in litter layer decreased significantly, the saprozoic individual number in 5-10 cm soil layer represented irregular trends. The individual number of xylophage increased with the depth of soil, and the group number in litter layer, the individual and group number in 5-10 cm soil layer decreased significantly. 4) Pielou evenness of xylophage had no significant changes with the canopy density, all the other diversity index of xylophage and saprophage were various with the increasing canopy density. The predatory Simpson index was stable under 0.5-0.8, and then decreased significantly under 0.8-0.9 canopy density. 5) The CCA (canonical correlation analysis) indicated that soil bulk density and moisture content were the main environmental factors affecting functional groups of soil macro fauna. Moisture content greatly impacted on the number of saprophagous individuals. But xylophage and predators were mostly affected by soil bulk density, and the predatory Simpson index was mainly affected by soil pH value and total phosphorus. Our research indicated that the structure of soil macro faunal functional group under 0.7 canopy density was comparatively stable, which would facilitate the maintenance of soil fertility and ecological function in Pinus massoniana

Variations in Below Canopy Turbulent Flux From Snow in North American Mountain Environments

Science.gov (United States)

Essery, R.; Marks, D.; Pomeroy, J.; Grangere, R.; Reba, M.; Hedstrom, N.; Link, T.; Winstral, A.

2004-12-01

Sensible and latent heat and mass fluxes from the snow surface are modulated by site canopy density and structure. Forest and shrub canopies reduce wind speeds and alter the radiation and thermal environment which will alter the below canopy energetics that control the magnitude of turbulent fluxes between the snow surface and the atmosphere. In this study eddy covariance (EC) systems were located in three experimental catchments along a mountain transect through the North American Cordillera. Within each catchment, a variety of sites representing the local range of climate, weather, and canopy conditions were selected for measurement of sensible and latent heat and mass flux from the snow surface. EC measurements were made 1) below a uniform pine canopy (2745m) in the Fraser Experimental Forest in Colorado from February through June melt-out in 2003; 2) at an open, unforested site (2100m), and below an Aspen canopy (2055m) within a small headwater catchment in the Reynolds Creek Experimental Watershed, Owyhee Mts., Idaho from October, 2003, through June melt-out, 2004; and 3) at five sites, representing a range of conditions: a) below a dense spruce forest (750m); b) a north-facing shrub-tundra slope (1383m); c) a south-facing shrub-tundra slope; d) the valley bottom between b) and c) (1363m); and e) a tundra site (1402m) in the Wolf Creek Research Basin (WCRB) in the Yukon, Canada during the 2001 and 2002 snow seasons. Summary data from all sites are presented and compared including the relative significance of sublimation losses at each site, the importance of interception losses to the snowcover mass balance, and the occurrence of condensation events. Site and weather conditions that inhibit or enhance flux from the snow surface are discussed. This research will improve snow modeling by allowing better representation of turbulent fluxes from snow in forested regions, and improved simulation of the snowcover mass balance over low deposition, high latitude sites

On the theory of gaseous transport to plant canopies

Science.gov (United States)

Bache, D. H.

Solutions of the convection-diffusion equations are developed to show the relationship between bulk transport parameters affecting gaseous transfer to plant canopies and local rates of transfer within the canopy. Foliage density is considered to be uniform and the drag coefficient of elements is specified by cd = γu- n with u as the local wind-speed and γ and n constants. Under conditions of high surface resistance, the bulk deposition velocity at the top of the canopy vg( h) approaches a limit defined by v g(h) = v̂gL p(1-ψ v̂gL p/u ∗) , where v̂g is the local deposition rate, Lp the effective foliage area, u ∗ the friction velocity and ψ a structure coefficient. From this, a criterion is proposed for defining the conditions in which the local resistances may be added in parallel. Comparisons with the external model for the bulk transport resistance rp = ra + rb + rc (where r p = 1/v g(h) and ra is a diffusive resistance between the apparent momentum sink and height h) shows that the bulk surface resistance r c = r̂s/L p( r̂s being a local surface resistance due to internal properties of the surface) and r b = overliner̂p-r a, appearing as an excess aerodynamic component; overliner̂p refers to the depth-averaged value of r̂p—the resistance to transfer through the laminar sublayer enveloping individual canopy elements. In conditions of zero surface resistance the bulk transport rate rp, o can be specified by r p,o/r a = E( r̂p/r̂∗) hq with E and q as constants, the term r̂p/r̂∗ referring to the resistances to mass and momentum transfer to canopy elements. A general expression is formulated for the sublayer Stanton number B -1  r bu ∗ at the extremes of high and zero surface resistance. In conditions of low surface resistance, it is shown that the terms rb + rc cannot be conveniently separated into equivalent aerodynamic and surface components as at the limit of high surface resistance. This conclusion is a departure from previous

A numerical study of atmospheric perturbations induced by heat from a wildland fire: sensitivity to vertical canopy structure and heat source strength

Science.gov (United States)

Michael T. Kiefer; Shiyuan Zhong; Warren E. Heilman; Joseph J. Charney; Xindi. Bian

2018-01-01

An improved understanding of atmospheric perturbations within and above a forest during a wildland fire has relevance to many aspects of wildland fires including fire spread, smoke transport and dispersion, and tree mortality. In this study, the ARPS-CANOPY model, a version of the Advanced Regional Prediction System (ARPS) model with a canopy parameterization, is...

A New, Two-layer Canopy Module For The Detailed Snow Model SNOWPACK

Science.gov (United States)

Gouttevin, I.; Lehning, M.; Jonas, T.; Gustafsson, D.; Mölder, M.

2014-12-01

A new, two-layer canopy module with thermal inertia for the detailed snow model SNOWPACK is presented. Compared to the old, one-layered canopy formulation with no heat mass, this module now offers a level of physical detail consistent with the detailed snow and soil representation in SNOWPACK. The new canopy model is designed to reproduce the difference in thermal regimes between leafy and woody canopy elements and their impact on the underlying snowpack energy balance. The new model is validated against data from an Alpine and a boreal site. Comparisons of modelled sub-canopy thermal radiations to stand-scale observations at Alptal, Switzerland, demonstrate the improvements induced by our new parameterizations. The main effect is a more realistic simulation of the canopy night-time drop in temperatures. The lower drop is induced by both thermal inertia and the two-layer representation. A specific result is that such a performance cannot be achieved by a single-layered canopy model. The impact of the new parameterizations on the modelled dynamics of the sub-canopy snowpack is analysed and yields consistent results, but the frequent occurrence of mixed-precipitation events at Alptal prevents a conclusive assessment of model performances against snow data.Without specific tuning, the model is also able to reproduce the measured summertime tree trunk temperatures and biomass heat storage at the boreal site of Norunda, Sweden, with an increased accuracy in amplitude and phase. Overall, the SNOWPACK model with its enhanced canopy module constitutes a unique (in its physical process representation) atmosphere-to-soil-through-canopy-and-snow modelling chain.

Virtual Geographic Simulation of Light Distribution within Three-Dimensional Plant Canopy Models

Directory of Open Access Journals (Sweden)

Liyu Tang

2017-12-01

Full Text Available Virtual geographic environments (VGEs have been regarded as an important new means of simulating, analyzing, and understanding complex geological processes. Plants and light are major components of the geographic environment. Light is a critical factor that affects ecological systems. In this study, we focused on simulating light transmission and distribution within a three-dimensional plant canopy model. A progressive refinement radiosity algorithm was applied to simulate the transmission and distribution of solar light within a detailed, three-dimensional (3D loquat (Eriobotrya japonica Lindl. canopy model. The canopy was described in three dimensions, and each organ surface was represented by a set of triangular facets. The form factors in radiosity were calculated using a hemi-cube algorithm. We developed a module for simulating the instantaneous light distribution within a virtual canopy, which was integrated into ParaTree. We simulated the distribution of photosynthetically active radiation (PAR within a loquat canopy, and calculated the total PAR intercepted at the whole canopy scale, as well as the mean PAR interception per unit leaf area. The ParaTree-integrated radiosity model simulates the uncollided propagation of direct solar and diffuse sky light and the light-scattering effect of foliage. The PAR captured by the whole canopy based on the radiosity is approximately 9.4% greater than that obtained using ray tracing and TURTLE methods. The latter methods do not account for the scattering among leaves in the canopy in the study, and therefore, the difference might be due to the contribution of light scattering in the foliage. The simulation result is close to Myneni’s findings, in which the light scattering within a canopy is less than 10% of the incident PAR. Our method can be employed for visualizing and analyzing the spatial distribution of light within a canopy, and for estimating the PAR interception at the organ and canopy

Characterization and Modeling of Atmospheric Flow Within and Above Plant Canopies

Science.gov (United States)

Souza Freire Grion, Livia

The turbulent flow within and above plant canopies is responsible for the exchange of momentum, heat, gases and particles between vegetation and the atmosphere. Turbulence is also responsible for the mixing of air inside the canopy, playing an important role in chemical and biophysical processes occurring in the plants' environment. In the last fifty years, research has significantly advanced the understanding of and ability to model the flow field within and above the canopy, but important issues remain unsolved. In this work, we focus on (i) the estimation of turbulent mixing timescales within the canopy from field data; and (ii) the development of new computationally efficient modeling approaches for the coupled canopy-atmosphere flow field. The turbulent mixing timescale represents how quickly turbulence creates a well-mixed environment within the canopy. When the mixing timescale is much smaller than the timescale of other relevant processes (e.g. chemical reactions, deposition), the system can be assumed to be well-mixed and detailed modeling of turbulence is not critical to predict the system evolution. Conversely, if the mixing timescale is comparable or larger than the other timescales, turbulence becomes a controlling factor for the concentration of the variables involved; hence, turbulence needs to be taken into account when studying and modeling such processes. In this work, we used a combination of ozone concentration and high-frequency velocity data measured within and above the canopy in the Amazon rainforest to characterize turbulent mixing. The eddy diffusivity parameter (used as a proxy for mixing efficiency) was applied in a simple theoretical model of one-dimensional diffusion, providing an estimate of turbulent mixing timescales as a function of height within the canopy and time-of-day. Results showed that, during the day, the Amazon rainforest is characterized by well-mixed conditions with mixing timescales smaller than thirty minutes in the

Simulations of tropical rainforest albedo: is canopy wetness important?

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Silvia N.M. Yanagi

Full Text Available Accurate information on surface albedo is essential for climate modelling, especially for regions such as Amazonia, where the response of the regional atmospheric circulation to the changes on surface albedo is strong. Previous studies have indicated that models are still unable to correctly reproduce details of the seasonal variation of surface albedo. Therefore, it was investigated the role of canopy wetness on the simulated albedo of a tropical rainforest by modifying the IBIS canopy radiation transfer code to incorporate the effects of canopy wetness on the vegetation reflectance. In this study, simulations were run using three versions of the land surface/ecosystem model IBIS: the standard version, the same version recalibrated to fit the data of albedo on tropical rainforests and a modified version that incorporates the effects of canopy wetness on surface albedo, for three sites in the Amazon forest at hourly and monthly scales. The results demonstrated that, at the hourly time scale, the incorporation of canopy wetness on the calculations of radiative transfer substantially improves the simulations results, whereas at the monthly scale these changes do not substantially modify the simulated albedo.

Parametrizing Evaporative Resistance for Heterogeneous Sparse Canopies through Novel Wind Tunnel Experimentation

Science.gov (United States)

Sloan, B.; Ebtehaj, A. M.; Guala, M.

2017-12-01

The understanding of heat and water vapor transfer from the land surface to the atmosphere by evapotranspiration (ET) is crucial for predicting the hydrologic water balance and climate forecasts used in water resources decision-making. However, the complex distribution of vegetation, soil and atmospheric conditions makes large-scale prognosis of evaporative fluxes difficult. Current ET models, such as Penman-Monteith and flux-gradient methods, are challenging to apply at the microscale due to ambiguity in determining resistance factors to momentum, heat and vapor transport for realistic landscapes. Recent research has made progress in modifying Monin-Obukhov similarity theory for dense plant canopies as well as providing clearer description of diffusive controls on evaporation at a smooth soil surface, which both aid in calculating more accurate resistance parameters. However, in nature, surfaces typically tend to be aerodynamically rough and vegetation is a mixture of sparse and dense canopies in non-uniform configurations. The goal of our work is to parameterize the resistances to evaporation based on spatial distributions of sparse plant canopies using novel wind tunnel experimentation at the St. Anthony Falls Laboratory (SAFL). The state-of-the-art SAFL wind tunnel was updated with a retractable soil box test section (shown in Figure 1), complete with a high-resolution scale and soil moisture/temperature sensors for recording evaporative fluxes and drying fronts. The existing capabilities of the tunnel were used to create incoming non-neutral stability conditions and measure 2-D velocity fields as well as momentum and heat flux profiles through PIV and hotwire anemometry, respectively. Model trees (h = 5 cm) were placed in structured and random configurations based on a probabilistic spacing that was derived from aerial imagery. The novel wind tunnel dataset provides the surface energy budget, turbulence statistics and spatial soil moisture data under varying

Potential Sources of Polarized Light from a Plant Canopy

Science.gov (United States)

Vanderbilt, Vern; Daughtry, Craig; Dahlgren, Robert

2016-01-01

Field measurements have demonstrated that sunlight polarized during a first surface reflection by shiny leaves dominates the optical polarization of the light reflected by shiny-leafed plant canopies having approximately spherical leaf angle probability density functions ("Leaf Angle Distributions" - LAD). Yet for other canopies - specifically those without shiny leaves and/or spherical LADs - potential sources of optically polarized light may not always be obvious. Here we identify possible sources of polarized light within those other canopies and speculate on the ecologically important information polarization measurements of those sources might contain.

Changes in canopy structure and ant assemblages affect soil ecosystem variables as a foundation species declines

DEFF Research Database (Denmark)

Kendrick, Joseph A.; Ribbons, Relena Rose; Classen, Aimee Taylor

2015-01-01

in ant species composition would interact to alter soil ecosystem variables. In the Harvard Forest Hemlock Removal Experiment (HF-HeRE), established in 2003, T. canadensis in large plots were killed in place or logged and removed to mimic adelgid infestation or salvage harvesting, respectively. In 2006...... (richness and abundance) of ants increases rapidly as T. canadensis is lost from the stands. Because ants live and forage at the litter-soil interface, we hypothesized that environmental changes caused by hemlock loss (e.g., increased light and warmth at the forest floor, increased soil pH) and shifts......, we built ant exclosure subplots within all of the canopy manipulation plots to examine direct and interactive effects of canopy change and ant assemblage composition on soil and litter variables. Throughout HF-HeRE, T. canadensis was colonized by the adelgid in 2009, and the infested trees are now...

Nondestructive, stereological estimation of canopy surface area

DEFF Research Database (Denmark)

Wulfsohn, Dvora-Laio; Sciortino, Marco; Aaslyng, Jesper M.

2010-01-01

We describe a stereological procedure to estimate the total leaf surface area of a plant canopy in vivo, and address the problem of how to predict the variance of the corresponding estimator. The procedure involves three nested systematic uniform random sampling stages: (i) selection of plants from...... a canopy using the smooth fractionator, (ii) sampling of leaves from the selected plants using the fractionator, and (iii) area estimation of the sampled leaves using point counting. We apply this procedure to estimate the total area of a chrysanthemum (Chrysanthemum morifolium L.) canopy and evaluate both...... the time required and the precision of the estimator. Furthermore, we compare the precision of point counting for three different grid intensities with that of several standard leaf area measurement techniques. Results showed that the precision of the plant leaf area estimator based on point counting...

Recovery of Forest Canopy Parameters by Inversion of Multispectral LiDAR Data

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Andrew Wallace

2012-02-01

Full Text Available We describe the use of Bayesian inference techniques, notably Markov chain Monte Carlo (MCMC and reversible jump MCMC (RJMCMC methods, to recover forest structural and biochemical parameters from multispectral LiDAR (Light Detection and Ranging data. We use a variable dimension, multi-layered model to represent a forest canopy or tree, and discuss the recovery of structure and depth profiles that relate to photochemical properties. We first demonstrate how simple vegetation indices such as the Normalized Differential Vegetation Index (NDVI, which relates to canopy biomass and light absorption, and Photochemical Reflectance Index (PRI which is a measure of vegetation light use efficiency, can be measured from multispectral data. We further describe and demonstrate our layered approach on single wavelength real data, and on simulated multispectral data derived from real, rather than simulated, data sets. This evaluation shows successful recovery of a subset of parameters, as the complete recovery problem is ill-posed with the available data. We conclude that the approach has promise, and suggest future developments to address the current difficulties in parameter inversion.

Spatial distribution of Guaiacum sanctum (Zygophyllaceae seedlings and saplings relative to canopy cover in Palo Verde National Park, Costa Rica

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Eric J. Fuchs

2013-09-01

Full Text Available The spatial distribution of individuals is a fundamental property of most species and constitutes essential information for the development of restoration and conservation strategies, especially for endangered plant species. In this paper we describe the spatial distribution of different size classes of the endangered tropical tree Guaiacum sanctum and the effect of canopy cover on spatial aggregation. Adult G. sanctum were located and mapped in a 50ha plot in Palo Verde National Park, Costa Rica. Seedlings, saplings and juveniles were mapped to the nearest centimetre and permanently marked in three 50x50m subplots. Within each subplot spatial aggregation was assessed using Ripley’s K statistic and canopy opening readings were performed every 5m using a densitometer. Kriging spatial interpolation and Monte Carlo simulations were used to determine if average canopy cover differed among size classes. Individuals of G. sanctum were spatially aggregated at all size classes with seedlings being the most frequent size class in all subplots. Seedlings were found predominantly in areas with significantly higher canopy cover. In contrast, juveniles were more likely found in areas with higher light availability. The high number of seedlings, saplings, and juveniles relative to adults suggests that populations of G. sanctum in PVNP are expanding. Light availability and canopy structure are important factors shaping the spatial distribution of this species. The contemporary demographic structure of G. sanctum is dependent on forest gap dynamics and changes in human disturbance during the past 25 years.

Estimation of canopy carotenoid content of winter wheat using multi-angle hyperspectral data

Science.gov (United States)

Kong, Weiping; Huang, Wenjiang; Liu, Jiangui; Chen, Pengfei; Qin, Qiming; Ye, Huichun; Peng, Dailiang; Dong, Yingying; Mortimer, A. Hugh

2017-11-01

Precise estimation of carotenoid (Car) content in crops, using remote sensing data, could be helpful for agricultural resources management. Conventional methods for Car content estimation were mostly based on reflectance data acquired from nadir direction. However, reflectance acquired at this direction is highly influenced by canopy structure and soil background reflectance. Off-nadir observation is less impacted, and multi-angle viewing data are proven to contain additional information rarely exploited for crop Car content estimation. The objective of this study was to explore the potential of multi-angle observation data for winter wheat canopy Car content estimation. Canopy spectral reflectance was measured from nadir as well as from a series of off-nadir directions during different growing stages of winter wheat, with concurrent canopy Car content measurements. Correlation analyses were performed between Car content and the original and continuum removed spectral reflectance. Spectral features and previously published indices were derived from data obtained at different viewing angles and were tested for Car content estimation. Results showed that spectral features and indices obtained from backscattering directions between 20° and 40° view zenith angle had a stronger correlation with Car content than that from the nadir direction, and the strongest correlation was observed from about 30° backscattering direction. Spectral absorption depth at 500 nm derived from spectral data obtained from 30° backscattering direction was found to reduce the difference induced by plant cultivars greatly. It was the most suitable for winter wheat canopy Car estimation, with a coefficient of determination 0.79 and a root mean square error of 19.03 mg/m2. This work indicates the importance of taking viewing geometry effect into account when using spectral features/indices and provides new insight in the application of multi-angle remote sensing for the estimation of crop

The Use of Sun Elevation Angle for Stereogrammetric Boreal Forest Height in Open Canopies

Science.gov (United States)

Montesano, Paul M.; Neigh, Christopher; Sun, Guoqing; Duncanson, Laura Innice; Van Den Hoek, Jamon; Ranson, Kenneth Jon

2017-01-01

Stereogrammetry applied to globally available high resolution spaceborne imagery (HRSI; less than 5 m spatial resolution) yields fine-scaled digital surface models (DSMs) of elevation. These DSMs may represent elevations that range from the ground to the vegetation canopy surface, are produced from stereoscopic image pairs (stereo pairs) that have a variety of acquisition characteristics, and have been coupled with lidar data of forest structure and ground surface elevation to examine forest height. This work explores surface elevations from HRSI DSMs derived from two types of acquisitions in open canopy forests. We (1) apply an automated mass-production stereogrammetry workflow to along-track HRSI stereo pairs, (2) identify multiple spatially coincident DSMs whose stereo pairs were acquired under different solar geometry, (3) vertically co-register these DSMs using coincident spaceborne lidar footprints (from ICESat-GLAS) as reference, and(4) examine differences in surface elevations between the reference lidar and the co-registered HRSI DSMs associated with two general types of acquisitions (DSM types) from different sun elevation angles. We find that these DSM types, distinguished by sun elevation angle at the time of stereo pair acquisition, are associated with different surface elevations estimated from automated stereogrammetry in open canopy forests. For DSM values with corresponding reference ground surface elevation from spaceborne lidar footprints in open canopy northern Siberian Larix forests with slopes less than10, our results show that HRSI DSM acquired with sun elevation angles greater than 35deg and less than 25deg (during snow-free conditions) produced characteristic and consistently distinct distributions of elevation differences from reference lidar. The former include DSMs of near-ground surfaces with root mean square errors less than 0.68 m relative to lidar. The latter, particularly those with angles less than 10deg, show distributions with

Estimating canopy bulk density and canopy base height for conifer stands in the interior Western United States using the Forest Vegetation Simulator Fire and Fuels Extension.

Science.gov (United States)

Seth Ex; Frederick Smith; Tara Keyser; Stephanie Rebain

2017-01-01

The Forest Vegetation Simulator Fire and Fuels Extension (FFE-FVS) is often used to estimate canopy bulk density (CBD) and canopy base height (CBH), which are key indicators of crown fire hazard for conifer stands in the Western United States. Estimated CBD from FFE-FVS is calculated as the maximum 4 m running mean bulk density of predefined 0.3 m thick canopy layers (...

Forests and their canopies: Archievements and horizons in canopy science

Czech Academy of Sciences Publication Activity Database

Nakamura, A.; Kitching, R. L.; Cao, M.; Creedy, T. J.; Fayle, Tom Maurice; Freiberg, M.; Hewitt, C. N.; Itioka, T.; Koh, L. P.; Ma, K.; Malhi, Y.; Mitchell, A.; Novotný, Vojtěch; Ozanne, C. M. P.; Song, L.; Wang, H.; Ashton, L. A.

2017-01-01

Roč. 32, č. 6 (2017), s. 438-451 ISSN 0169-5347 R&D Projects: GA ČR(CZ) GA16-09427S; GA ČR GB14-36098G EU Projects: European Commission(XE) 669609 - Diversity6continents Institutional support: RVO:60077344 Keywords : biodiversity * canopy * cranes Subject RIV: EH - Ecology, Behaviour OBOR OECD: Ecology Impact factor: 15.268, year: 2016 http://www.sciencedirect.com/science/article/pii/S0169534717300599

Canopy gaps decrease microbial densities and disease risk for a shade-intolerant tree species

Science.gov (United States)

Kurt O. Reinhart; Alejandro A. Royo; Stacie A. Kageyama; Keith. Clay

2010-01-01

Canopy disturbances such as windthrowevents have obvious impacts on forest structure and composition aboveground, but changes in soil microbial communities and the consequences of these changes are less understood.We characterized the densities of a soil-borne pathogenic oomycete (Pythium) and a common saprotrophic zygomycete (Mortierella...

Soil carbon estimation from eucalyptus grandis using canopy spectra

African Journals Online (AJOL)

Mapping soil fertility parameters, such as soil carbon (C), is fundamentally important for forest management and research related to forest growth and climate change. This study seeks to establish the link between Eucalyptus grandis canopy spectra and soil carbon using raw and continuum-removed spectra. Canopy-level ...

Chlorophyll Can Be Reduced in Crop Canopies with Little Penalty to Photosynthesis1[OPEN

Science.gov (United States)

Drewry, Darren T.; VanLoocke, Andy; Cho, Young B.

2018-01-01

The hypothesis that reducing chlorophyll content (Chl) can increase canopy photosynthesis in soybeans was tested using an advanced model of canopy photosynthesis. The relationship among leaf Chl, leaf optical properties, and photosynthetic biochemical capacity was measured in 67 soybean (Glycine max) accessions showing large variation in leaf Chl. These relationships were integrated into a biophysical model of canopy-scale photosynthesis to simulate the intercanopy light environment and carbon assimilation capacity of canopies with wild type, a Chl-deficient mutant (Y11y11), and 67 other mutants spanning the extremes of Chl to quantify the impact of variation in leaf-level Chl on canopy-scale photosynthetic assimilation and identify possible opportunities for improving canopy photosynthesis through Chl reduction. These simulations demonstrate that canopy photosynthesis should not increase with Chl reduction due to increases in leaf reflectance and nonoptimal distribution of canopy nitrogen. However, similar rates of canopy photosynthesis can be maintained with a 9% savings in leaf nitrogen resulting from decreased Chl. Additionally, analysis of these simulations indicate that the inability of Chl reductions to increase photosynthesis arises primarily from the connection between Chl and leaf reflectance and secondarily from the mismatch between the vertical distribution of leaf nitrogen and the light absorption profile. These simulations suggest that future work should explore the possibility of using reduced Chl to improve canopy performance by adapting the distribution of the “saved” nitrogen within the canopy to take greater advantage of the more deeply penetrating light. PMID:29061904

Mapping Forest Canopy Height Across Large Areas by Upscaling ALS Estimates with Freely Available Satellite Data

Directory of Open Access Journals (Sweden)

Phil Wilkes

2015-09-01

Full Text Available Operational assessment of forest structure is an on-going challenge for land managers, particularly over large, remote or inaccessible areas. Here, we present an easily adopted method for generating a continuous map of canopy height at a 30 m resolution, demonstrated over 2.9 million hectares of highly heterogeneous forest (canopy height 0–70 m in Victoria, Australia. A two-stage approach was utilized where Airborne Laser Scanning (ALS derived canopy height, captured over ~18% of the study area, was used to train a regression tree ensemble method; random forest. Predictor variables, which have a global coverage and are freely available, included Landsat Thematic Mapper (Tasselled Cap transformed, Moderate Resolution Imaging Spectroradiometer Normalized Difference Vegetation Index time series, Shuttle Radar Topography Mission elevation data and other ancillary datasets. Reflectance variables were further processed to extract additional spatial and temporal contextual and textural variables. Modeled canopy height was validated following two approaches; (i random sample cross validation; and (ii with 108 inventory plots from outside the ALS capture extent. Both the cross validation and comparison with inventory data indicate canopy height can be estimated with a Root Mean Square Error (RMSE of ≤ 31% (~5.6 m at the 95th percentile confidence interval. Subtraction of the systematic component of model error, estimated from training data error residuals, rescaled canopy height values to more accurately represent the response variable distribution tails e.g., tall and short forest. Two further experiments were carried out to test the applicability and scalability of the presented method. Results suggest that (a no improvement in canopy height estimation is achieved when models were constructed and validated for smaller geographic areas, suggesting there is no upper limit to model scalability; and (b training data can be captured over a small

High-Resolution Forest Canopy Height Estimation in an African Blue Carbon Ecosystem

Science.gov (United States)

Lagomasino, David; Fatoyinbo, Temilola; Lee, Seung-Kuk; Simard, Marc

2015-01-01

Mangrove forests are one of the most productive and carbon dense ecosystems that are only found at tidally inundated coastal areas. Forest canopy height is an important measure for modeling carbon and biomass dynamics, as well as land cover change. By taking advantage of the flat terrain and dense canopy cover, the present study derived digital surface models (DSMs) using stereophotogrammetric techniques on high-resolution spaceborne imagery (HRSI) for southern Mozambique. A mean-weighted ground surface elevation factor was subtracted from the HRSI DSM to accurately estimate the canopy height in mangrove forests in southern Mozambique. The mean and H100 tree height measured in both the field and with the digital canopy model provided the most accurate results with a vertical error of 1.18-1.84 m, respectively. Distinct patterns were identified in the HRSI canopy height map that could not be discerned from coarse shuttle radar topography mission canopy maps even though the mode and distribution of canopy heights were similar over the same area. Through further investigation, HRSI DSMs have the potential of providing a new type of three-dimensional dataset that could serve as calibration/validation data for other DSMs generated from spaceborne datasets with much larger global coverage. HSRI DSMs could be used in lieu of Lidar acquisitions for canopy height and forest biomass estimation, and be combined with passive optical data to improve land cover classifications.

Flume experiments on intermittency and zero-crossing properties of canopy turbulence

Science.gov (United States)

Poggi, Davide; Katul, Gabriel

2009-06-01

How the presence of a canopy alters the clustering and the fine scale intermittency exponents and any possible connections between them remains a vexing research problem in canopy turbulence. To begin progress on this problem, detailed flume experiments in which the longitudinal and vertical velocity time series were acquired using laser Doppler anemometry within and above a uniform canopy composed of densely arrayed rods. The time series analysis made use of the telegraphic approximation (TA) and phase-randomization (PR) methods. The TA preserved the so-called zero-crossing properties in the original turbulent velocity time series but eliminated amplitude variations, while the PR generated surrogate data that preserved the spectral scaling laws in the velocity series but randomized the acceleration statistics. Based on these experiments, it was shown that the variations in the dissipation intermittency exponents were well described by the Taylor microscale Reynolds number (Reλ) within and above the canopy. In terms of clustering, quantified here using the variance in zero-crossing density across scales, two scaling regimes emerged. For spatial scales much larger than the canopy height hc, representing the canonical scale of the vortices dominating the flow, no significant clustering was detected. For spatial scales much smaller than hc, significant clustering was discernable and follows an extensive scaling law inside the canopy. Moreover, the canopy signatures on the clustering scaling laws were weak. When repeating these clustering measures on the PR data, the results were indistinguishable from the original series. Hence, clustering exponents derived from variances in zero-crossing density across scales primarily depended on the velocity correlation function and not on the distributional properties of the acceleration. In terms of the connection between dissipation intermittency and clustering exponents, there was no significant relationship. While the former

Estimating wood volume from canopy area in deciduous woodlands ...

African Journals Online (AJOL)

In this study we tested the predictive ability of canopy area in estimating wood volume in deciduous woodlands of Zimbabwe. The study was carried out in four sites of different climatic conditions. We used regression analysis to statistically quantify the prediction of wood volume from canopy area at species and stand level ...

Employing lidar to detail vegetation canopy architecture for prediction of aeolian transport

Science.gov (United States)

Sankey, Joel B.; Law, Darin J.; Breshears, David D.; Munson, Seth M.; Webb, Robert H.

2013-01-01

The diverse and fundamental effects that aeolian processes have on the biosphere and geosphere are commonly generated by horizontal sediment transport at the land surface. However, predicting horizontal sediment transport depends on vegetation architecture, which is difficult to quantify in a rapid but accurate manner. We demonstrate an approach to measure vegetation canopy architecture at high resolution using lidar along a gradient of dryland sites ranging from 2% to 73% woody plant canopy cover. Lidar-derived canopy height, distance (gaps) between vegetation elements (e.g., trunks, limbs, leaves), and the distribution of gaps scaled by vegetation height were correlated with canopy cover and highlight potentially improved horizontal dust flux estimation than with cover alone. Employing lidar to estimate detailed vegetation canopy architecture offers promise for improved predictions of horizontal sediment transport across heterogeneous plant assemblages.

Wireless sensor networks for canopy temperature sensing and irrigation management

Science.gov (United States)

For researchers, canopy temperature measurements have proven useful in characterizing crop water stress and developing protocols for irrigation management. Today, there is heightened interest in using remote canopy temperature measurements for real-time irrigation scheduling. However, without the us...

The role of forest stand structure as biodiversity indicator

DEFF Research Database (Denmark)

Gao, Tian; Hedblom, Marcus; Emilsson, Tobias

2014-01-01

be achieved if indicators are derived from existing data. In this study, a model for classifying forest stand structures was developed and tested as an indicator of overall plant species diversity at stand level. The model combines four stand structure parameters: canopy coverage, age of canopy trees, tree...... species composition and canopy stratification. Using data from the National Inventory of Landscapes in Sweden and General Linear Mixed Model, plant species diversity (Shannon diversity index, SHDI) and composition (Sørensen-Dice index, SDI) were tested between 26 different stand structure types and nine...... soil classes. The results showed that mature stands with a stratified canopy had the highest plant species diversity across the soil classes, particularly if they comprised mixed coniferous and broadleaved species with a semi-open canopy. In contrast, young (...

Dispersion simulation of airborne effluent through tree canopy using OpenFOAM CFD code

International Nuclear Information System (INIS)

Rakesh, P.T.; Venkatesan, R.; Baskaran, R.; Venkatraman, B.

2016-01-01

Nuclear plants are often surrounded by tree canopy as a part of landscaping and green belt development. The transport and dispersion of air borne pollutants within the tree/plant canopies is greatly controlled by turbulence. The density of the tree canopy, the height and type of the trees is of importance while determining the intensity of turbulence. In order to study the mechanical effect of the canopy and the consequent modification in the ground level concentration pattern from a ground level release of radioactivity, a CFD code called OpenFOAM is used. The main task of this study is the implementation of flow and dispersion through plant canopies in Open FOAM

Detection of low-frequency organized structures in night-time air flow within a spruce canopy on the upwind and downwind sides of a mountain ridge

Czech Academy of Sciences Publication Activity Database

Potužníková, Kateřina; Sedlák, Pavel; Koucká Knížová, Petra

2015-01-01

Roč. 16, č. 4 (2015), s. 432-437 ISSN 1530-261X R&D Projects : GA ČR(CZ) GP205/05/P564; GA ČR(CZ) GA15-24688S; GA AV ČR(CZ) IAA300420803 Institutional support: RVO:68378289 Keywords : nocturnal boundary layer * turbulence * organized structures * complex terrain * forest canopy * wavelet transform Subject RIV: DG - Athmosphere Science s, Meteorology Impact factor: 1.570, year: 2015 http://onlinelibrary.wiley.com/doi/10.1002/asl.578/epdf

Comparison of different ground techniques to map leaf area index of Norway spruce forest canopy

NARCIS (Netherlands)

Homolova, L.; Malenovsky, Z.; Hanus, J.; Tomaskova, I.; Dvoráková, M.; Pokorny, R.

2007-01-01

The leaf area index (LAI) of three monocultures of Norway spruce (Picea abies (L.) Karst), different in age and structure, was measured by means of two indirect optical techniques of LAI field mapping: 1/ plant canopy analyser LAI-2000, and 2/ digital hemispherical photographs (DHP). The supportive

Model for absorption and release of gaseous materials by forest canopies

International Nuclear Information System (INIS)

Murphy, C.E. Jr.

1976-01-01

A model of the physical processes defining the absorption and release of materials by a forest canopy has been developed. The model deals with the turbulent transport of gaseous materials in the surface boundary layer near the canopy, the turbulent transport in the canopy atmosphere, the transport through the boundary layer near the leaf and soil surface, and the solution of the gaseous materials in intracellular fluids and subsequent diffusion into the leaf cells. The model is used to simulate the uptake of molecular tritium by the forest canopy and the subsequent release of tritiated water. Results of dynamic simulations of tritium uptake and release are compared with data collected at the time of a release of molecular tritium to the atmosphere

TREE STEM AND CANOPY BIOMASS ESTIMATES FROM TERRESTRIAL LASER SCANNING DATA

Directory of Open Access Journals (Sweden)

K. Olofsson

2017-10-01

Full Text Available In this study an automatic method for estimating both the tree stem and the tree canopy biomass is presented. The point cloud tree extraction techniques operate on TLS data and models the biomass using the estimated stem and canopy volume as independent variables. The regression model fit error is of the order of less than 5 kg, which gives a relative model error of about 5 % for the stem estimate and 10–15 % for the spruce and pine canopy biomass estimates. The canopy biomass estimate was improved by separating the models by tree species which indicates that the method is allometry dependent and that the regression models need to be recomputed for different areas with different climate and different vegetation.

The relationship between reference canopy conductance and simplified hydraulic architecture

Science.gov (United States)

Novick, Kimberly; Oren, Ram; Stoy, Paul; Juang, Jehn-Yih; Siqueira, Mario; Katul, Gabriel

2009-06-01

Terrestrial ecosystems are dominated by vascular plants that form a mosaic of hydraulic conduits to water movement from the soil to the atmosphere. Together with canopy leaf area, canopy stomatal conductance regulates plant water use and thereby photosynthesis and growth. Although stomatal conductance is coordinated with plant hydraulic conductance, governing relationships across species has not yet been formulated at a practical level that can be employed in large-scale models. Here, combinations of published conductance measurements obtained with several methodologies across boreal to tropical climates were used to explore relationships between canopy conductance rates and hydraulic constraints. A parsimonious hydraulic model requiring sapwood-to-leaf area ratio and canopy height generated acceptable agreement with measurements across a range of biomes (r2=0.75). The results suggest that, at long time scales, the functional convergence among ecosystems in the relationship between water-use and hydraulic architecture eclipses inter-specific variation in physiology and anatomy of the transport system. Prognostic applicability of this model requires independent knowledge of sapwood-to-leaf area. In this study, we did not find a strong relationship between sapwood-to-leaf area and physical or climatic variables that are readily determinable at coarse scales, though the results suggest that climate may have a mediating influence on the relationship between sapwood-to-leaf area and height. Within temperate forests, canopy height alone explained a large amount of the variance in reference canopy conductance (r2=0.68) and this relationship may be more immediately applicable in the terrestrial ecosystem models.

Landscape-scale tropical forest dynamics: Relating canopy traits and topographically derived hydrologic indices in a floodplain system using CAO-AToMS

Science.gov (United States)

Chadwick, K.; Asner, G. P.

2012-12-01

The geomorphology of floodplains in the humid tropics has been used to infer basic classifications of forest types. However, analysis of the landscape-scale topographic and hydrologic patterns underpinning spatial variation in forest composition and function remain elusive due to the sparse coverage of forest plots, coarse resolution remotely sensed data, and the challenges of collecting first order hydrologic data. Airborne remote measurements provide an opportunity to consider the relationship between high-resolution topographic and derived hydrologic environmental gradients, and forest canopy characteristics with important cascading effects on ecosystem function and biosphere-atmosphere interactions. In 2011, the Carnegie Airborne Observatory (CAO) Airborne Taxonomic Mapping System (AToMS) was used to map a large section of the Los Amigos Conservation Concession harboring largely intact lowland humid tropical forest in the southwestern Peruvian Amazon. The CAO Visible-Shortwave Imaging Spectrometer (VSWIR) collected 480-band high-fidelity imaging spectroscopy data of the forest canopy, while its high-resolution dual waveform LiDAR captured information on canopy structure and the underlying terrain. The data were used to quantify relationships between topographic and hydrologic gradients and forest functional traits. Results suggest strong local hydrogeomorphic control over vegetation spectral properties with known relationships to canopy functional traits, including pigment and nutrient concentrations and light capture, as well as canopy structural characteristics, including vegetation height, understory plant cover, and aboveground biomass. Data from CAO-AToMS reveals local-scale patterns in environmental conditions and ecological variation that meets or exceeds the variation previously reported across ecosystems of the Western Amazon Basin.

MVP: A Simple and Effective Model to Simulate the Mean and Variation of Photosynthetically Active Radiation Under Discrete Forest Canopies

Science.gov (United States)

Song, C.; Band, L. E.

2003-12-01

The spatial patterns of Photosynthetically Active Radiation (PAR) under forest canopies, including both its mean and spatial variation, are critical factors that determine numerous ecophysiological processes in plant ecosystems. Though numerous models have been developed that can accurately simulate PAR transmission through plant canopies, Beer's law remains the primary model used in ecological models to describe PAR transmission through plant canopies due to the fact that the more accurate models are too complicated to be used operationally. This study developed a simple and computationally efficient model to simulate both the Mean and Variation of PAR (MVP) under the forest canopy. The model provides a careful description of the effects of gaps on the variable light environment under forest canopy, while it simplifies the simulation of multiple scattering of photons. The model assumes that a forest canopy is composed of individual crowns distributed within upper and lower boundaries with two types of gaps: the between- and within-crown gaps. The inputs to the model are canopy structural parameters, including canopy depth, tree count density, tree crown shape, and foliage area volume density (m2/m3, leaf areas per unit crown volume). The between-crown gaps are simulated with geometric optics, and the within-crown gaps are described by Beer's law. The model accounts for the covariance of PAR in space through time, making it possible to simulate both instantaneous variation of PAR and variation of daily accumulated PAR. Validation with observed PAR using ten quantum sensors under the Old Black Spruce stand at the Southern Study Area of the BOREAS project indicates the model captures the mean and variation of PAR under forest canopy reasonably well. The model is simple enough that it can be used by other ecological models, such as ecosystem dynamics and carbon budget models. Further validation and testing of the model with other types forest are needed in the future.

Plant science in forest canopies--the first 30 years of advances and challenges (1980-2010).

Science.gov (United States)

Lowman, Margaret D; Schowalter, Timothy D

2012-04-01

As an emerging subdiscipline of forest biology, canopy science has undergone a transition from observational, 'oh-wow' exploration to a more hypothesis-driven, experimental arena for rigorous field biology. Although efforts to explore forest canopies have occurred for a century, the new tools to access the treetops during the past 30 yr facilitated not only widespread exploration but also new discoveries about the complexity and global effects of this so-called 'eighth continent of the planet'. The forest canopy is the engine that fixes solar energy in carbohydrates to power interactions among forest components that, in turn, affect regional and global climate, biogeochemical cycling and ecosystem services. Climate change, biodiversity conservation, fresh water conservation, ecosystem productivity, and carbon sequestration represent important components of forest research that benefit from access to the canopy for rigorous study. Although some canopy variables can be observed or measured from the ground, vertical and horizontal variation in environmental conditions and processes within the canopy that determine canopy-atmosphere and canopy-forest floor interactions are best measured within the canopy. Canopy science has matured into a cutting-edge subset of forest research, and the treetops also serve as social and economic drivers for sustainable communities, fostering science education and ecotourism. This interdisciplinary context of forest canopy science has inspired innovative new approaches to environmental stewardship, involving diverse stakeholders. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

Seasonal variations of leaf and canopy properties tracked by ground-based NDVI imagery in a temperate forest.

Science.gov (United States)

Yang, Hualei; Yang, Xi; Heskel, Mary; Sun, Shucun; Tang, Jianwu

2017-04-28

Changes in plant phenology affect the carbon flux of terrestrial forest ecosystems due to the link between the growing season length and vegetation productivity. Digital camera imagery, which can be acquired frequently, has been used to monitor seasonal and annual changes in forest canopy phenology and track critical phenological events. However, quantitative assessment of the structural and biochemical controls of the phenological patterns in camera images has rarely been done. In this study, we used an NDVI (Normalized Difference Vegetation Index) camera to monitor daily variations of vegetation reflectance at visible and near-infrared (NIR) bands with high spatial and temporal resolutions, and found that the infrared camera based NDVI (camera-NDVI) agreed well with the leaf expansion process that was measured by independent manual observations at Harvard Forest, Massachusetts, USA. We also measured the seasonality of canopy structural (leaf area index, LAI) and biochemical properties (leaf chlorophyll and nitrogen content). We found significant linear relationships between camera-NDVI and leaf chlorophyll concentration, and between camera-NDVI and leaf nitrogen content, though weaker relationships between camera-NDVI and LAI. Therefore, we recommend ground-based camera-NDVI as a powerful tool for long-term, near surface observations to monitor canopy development and to estimate leaf chlorophyll, nitrogen status, and LAI.

LEAF MICROMORPHOMETRY OF Schinus molle L. (ANARCADIACEAE IN DIFFERENT CANOPY HEIGHTS.

Directory of Open Access Journals (Sweden)

Marinês Ferreira Pires

2015-03-01

Full Text Available Leaf characterization of trees is essential for its identification and use, as well as to understand its relationships with environment. The objective of this work is to study the leaflet anatomy and leaf biometrical characteristics at different canopy heights of Schinus molle plants as a function of its environmental and physiological modifications. Leaves were collected at three different canopy heights: base, middle and upper canopy in a plantation of S. molle. Leaves were used for anatomical and biometrical analysis. For the anatomical analysis, leaves were fixed in FAA and stored in ethanol 70% and further submitted to transversal and paradermical sections. Slides were photomicrographed and image analysis was performed in UTHSCSA-Imagetool. For biometrical analysis leaf area, length, width, dry mass and specific leaf area were evaluated. The leaflets exhibited single layer epidermis, anomocytic and ciclocytic stomata, isobilateral mesophyll, subepidermal parenchyma layer in both adaxial and abaxial faces of epidermis, secretory vessels and lamellar collenchyma in midrib and leaf border. Leaf anatomy modifications occurred in cuticle and mesophyll thickness, vascular system, phloem thickness, and stomatal density in accordance with leaf canopy position. Leaves were smaller and with reduced leaf area at higher canopy positions. S. molle leaf anatomy is different from other species within Schinus genre with modifications under different environmental and physiological modifications promoted by its canopy height.

Crop canopy BRDF simulation and analysis using Monte Carlo method

NARCIS (Netherlands)

Huang, J.; Wu, B.; Tian, Y.; Zeng, Y.

2006-01-01

This author designs the random process between photons and crop canopy. A Monte Carlo model has been developed to simulate the Bi-directional Reflectance Distribution Function (BRDF) of crop canopy. Comparing Monte Carlo model to MCRM model, this paper analyzes the variations of different LAD and

Age-related effects on leaf area/sapwood area relationships, canopy transpiration and carbon gain of Norway spruce stands (Picea abies) in the Fichtelgebirge, Germany.

Science.gov (United States)

Köstner, B; Falge, E; Tenhunen, J D

2002-06-01

Stand age is an important structural determinant of canopy transpiration (E(c)) and carbon gain. Another more functional parameter of forest structure is the leaf area/sapwood area relationship, A(L)/A(S), which changes with site conditions and has been used to estimate leaf area index of forest canopies. The interpretation of age-related changes in A(L)/A(S) and the question of how A(L)/A(S) is related to forest functions are of current interest because they may help to explain forest canopy fluxes and growth. We conducted studies in mature stands of Picea abies (L.) Karst. varying in age from 40 to 140 years, in tree density from 1680 to 320 trees ha(-1), and in tree height from 15 to 30 m. Structural parameters were measured by biomass harvests of individual trees and stand biometry. We estimated E(c) from scaled-up xylem sap flux of trees, and canopy-level fluxes were predicted by a three-dimensional microclimate and gas exchange model (STANDFLUX). In contrast to pine species, A(L)/A(S) of P. abies increased with stand age from 0.26 to 0.48 m(2) cm(-2). Agreement between E(c) derived from scaled-up sap flux and modeled canopy transpiration was obtained with the same parameterization of needle physiology independent of stand age. Reduced light interception per leaf area and, as a consequence, reductions in net canopy photosynthesis (A(c)), canopy conductance (g(c)) and E(c) were predicted by the model in the older stands. Seasonal water-use efficiency (WUE = A(c)/E(c)), derived from scaled-up sap flux and stem growth as well as from model simulation, declined with increasing A(L)/A(S) and stand age. Based on the different behavior of age-related A(L)/A(S) in Norway spruce stands compared with other tree species, we conclude that WUE rather than A(L)/A(S) could represent a common age-related property of all species. We also conclude that, in addition to hydraulic limitations reducing carbon gain in old stands, a functional change in A(L)/A(S) that is related to

Linking canopy reflectance to crop structure and photosynthesis to capture and interpret spatiotemporal dimensions of per-field photosynthetic productivity

Science.gov (United States)

Xue, Wei; Jeong, Seungtaek; Ko, Jonghan; Tenhunen, John

2017-03-01

Nitrogen and water availability alter canopy structure and physiology, and thus crop growth, yielding large impacts on ecosystem-regulating/production provisions. However, to date, explicitly quantifying such impacts remains challenging partially due to lack of adequate methodology to capture spatial dimensions of ecosystem changes associated with nitrogen and water effects. A data fitting, where close-range remote-sensing measurements of vegetation indices derived from a handheld instrument and an unmanned aerial vehicle (UAV) system are linked to in situ leaf and canopy photosynthetic traits, was applied to capture and interpret inter- and intra-field variations in gross primary productivity (GPP) in lowland rice grown under flooded conditions (paddy rice, PD) subject to three nitrogen application rates and under rainfed conditions (RF) in an East Asian monsoon region of South Korea. Spatial variations (SVs) in both GPP and light use efficiency (LUEcabs) early in the growing season were enlarged by nitrogen addition. The nutritional effects narrowed over time. A shift in planting culture from flooded to rainfed conditions strengthened SVs in GPP and LUEcabs. Intervention of prolonged drought late in the growing season dramatically intensified SVs that were supposed to seasonally decrease. Nevertheless, nitrogen addition effects on SV of LUEcabs at the early growth stage made PD fields exert greater SVs than RF fields. SVs of GPP across PD and RF rice fields were likely related to leaf area index (LAI) development less than to LUEcabs, while numerical analysis suggested that considering strength in LUEcabs and its spatial variation for the same crop type tends to be vital for better evaluation in landscape/regional patterns of ecosystem photosynthetic productivity at critical phenology stages.

Contrasting germination responses to vegetative canopies experienced in pre- vs. post-dispersal environments

Science.gov (United States)

Leverett, Lindsay D.; Auge, Gabriela A.; Bali, Aman; Donohue, Kathleen

2016-01-01

Background Seeds adjust their germination based on conditions experienced before and after dispersal. Post-dispersal cues are expected to be more accurate predictors of offspring environments, and thus offspring success, than pre-dispersal cues. Therefore, germination responses to conditions experienced during seed maturation may be expected to be superseded by responses to conditions experienced during seed imbibition. In taxa of disturbed habitats, neighbours frequently reduce the performance of germinants. This leads to the hypotheses that a vegetative canopy will reduce germination in such taxa, and that a vegetative canopy experienced during seed imbibition will over-ride germination responses to a canopy experienced during seed maturation, since it is a more proximal cue of immediate competition. These hypotheses were tested here in Arabidopsis thaliana. Methods Seeds were matured under a simulated canopy (green filter) or white light. Fresh (dormant) seeds were imbibed in the dark, white light or canopy at two temperatures (10 or 22 °C), and germination proportions were recorded. Germination was also recorded in after-ripened (less dormant) seeds that were induced into secondary dormancy and imbibed in the dark at each temperature, either with or without brief exposure to red and far-red light. Key Results Unexpectedly, a maturation canopy expanded the conditions that elicited germination, even as seeds lost and regained dormancy. In contrast, an imbibition canopy impeded or had no effect on germination. Maturation under a canopy did not modify germination responses to red and far-red light. Seed maturation under a canopy masked genetic variation in germination. Conclusions The results challenge the hypothesis that offspring will respond more strongly to their own environment than to that of their parents. The observed relaxation of germination requirements caused by a maturation canopy could be maladaptive for offspring by disrupting germination responses

Mapping Reflectance Anisotropy of a Potato Canopy Using Aerial Images Acquired with an Unmanned Aerial Vehicle

Directory of Open Access Journals (Sweden)

Peter P. J. Roosjen

2017-04-01

Full Text Available Viewing and illumination geometry has a strong influence on optical measurements of natural surfaces due to their anisotropic reflectance properties. Typically, cameras on-board unmanned aerial vehicles (UAVs are affected by this because of their relatively large field of view (FOV and thus large range of viewing angles. In this study, we investigated the magnitude of reflectance anisotropy effects in the 500–900 nm range, captured by a frame camera mounted on a UAV during a standard mapping flight. After orthorectification and georeferencing of the images collected by the camera, we calculated the viewing geometry of all observations of each georeferenced ground pixel, forming a dataset with multi-angular observations. We performed UAV flights on two days during the summer of 2016 over an experimental potato field where different zones in the field received different nitrogen fertilization treatments. These fertilization levels caused variation in potato plant growth and thereby differences in structural properties such as leaf area index (LAI and canopy cover. We fitted the Rahman–Pinty–Verstraete (RPV model through the multi-angular observations of each ground pixel to quantify, interpret, and visualize the anisotropy patterns in our study area. The Θ parameter of the RPV model, which controls the proportion of forward and backward scattering, showed strong correlation with canopy cover, where in general an increase in canopy cover resulted in a reduction of backward scattering intensity, indicating that reflectance anisotropy contains information on canopy structure. In this paper, we demonstrated that anisotropy data can be extracted from measurements using a frame camera, collected during a typical UAV mapping flight. Future research will focus on how to use the anisotropy signal as a source of information for estimation of physical vegetation properties.

Throughfall-mediated alterations to soil microbial community structure in a forest plot of homogenous soil texture, litter, and plant species composition

Science.gov (United States)

Van Stan, John; Rosier, Carl; Moore, Leslie; Gay, Trent; Reichard, James; Wu, Tiehang; Kan, Jinjun

2015-04-01

Identifying spatiotemporal influences on soil microbial community (SMC) structure is critical to our understanding of patterns in biogeochemical cycling and related ecological services (e.g., plant community structure, water quality, response to environmental change). Since forest canopy structure alters the spatiotemporal patterning of precipitation water and solute supplies to soils (via "throughfall"), is it possible that changes in SMC structure could arise from modifications in canopy elements? Our study investigates this question by monitoring throughfall water and dissolved ion supply to soils beneath a continuum of canopy structure: from large gaps (0% cover), to bare Quercus virginiana Mill. (southern live oak) canopy (~50-70%), to heavy Tillandsia usneoides L. (Spanish moss) canopy (>90% cover). Throughfall water supply diminished with increasing canopy cover, yet increased washoff/leaching of Na+, Cl-, PO43-, and SO42- from the canopy to the soils. Presence of T. usneoides diminished throughfall NO3-, but enhanced NH4+, concentrations supplied to subcanopy soils. The mineral soil horizon (0-10 cm) sampled in triplicate from locations receiving throughfall water and solutes from canopy gaps, bare canopy, and T. usneoides-laden canopy significantly differed in soil chemistry parameters (pH, Ca2+, Mg2+, CEC). Polymerase Chain Reaction-Denaturant Gradient Gel Electrophoresis (PCR-DGGE) banding patterns beneath similar canopy covers (experiencing similar throughfall dynamics) also produced high similarities per ANalyses Of SIMilarity (ANO-SIM), and clustered together when analyzed by Nonmetric Multidimensional Scaling (NMDS). These results suggest that modifications of forest canopy structures are capable of affecting mineral-soil horizon SMC structure via throughfall when canopies' biomass distribution is highly heterogeneous. As SMC structure, in many instances, relates to functional diversity, we suggest that future research seek to identify functional

Canopy uptake of atmospheric N deposition at a conifer forest: part I -canopy N budget, photosynthetic efficiency and net ecosystem exchange

International Nuclear Information System (INIS)

Sievering, H.; Tomaszewski, T.; Torizzo, J.

2007-01-01

Global carbon cycle assessments of anthropogenic nitrogen (N) deposition influences on carbon sequestration often assume enhanced sequestration results. This assumption was evaluated at a Rocky Mountains spruce-fir forest. Forest canopy N uptake (CNU) of atmospheric N deposition was estimated by combining event wet and throughfall N fluxes with gradient measured HNO 3 and NH 3 as well as inferred (NO x and particulate N) dry fluxes. Approximately 80% of the growing-season 3 kg N/ha total deposition is retained in canopy foliage and branches. This CNU constitutes ∼1/3 of canopy growing season new N supply at this conifer forest site. Daytime net ecosystem exchange (NEE) significantly (P = 0.006) and negatively (CO 2 uptake) correlated with CNU. Multiple regression indicates ∼20% of daytime NEE may be attributed to CNU (P < 0.02); more than soil water content. A wet deposition N-amendment study (Tomaszewski and Sievering), at canopy spruce branches, increased their growing-season CNU by 40-50% above ambient. Fluorometry and gas exchange results show N-amended spruce branches had greater photosynthetic efficiency and higher carboxylation rates than control and untreated branches. N-amended branches had 25% less photoinhibition, with a 5-9% greater proportion of foliar-N-in-Rubisco. The combined results provide, partly, a mechanistic explanation for the NEE dependence on CNU

Water stress effects on spatially referenced cotton crop canopy properties

Science.gov (United States)

rop canopy temperature is known to be affected by water stress. Canopy reflectance can also be impacted as leaf orientation and color respond to the stress. As sensor systems are investigated for real-time management of irrigation and nitrogen, it is essential to understand how the data from the sen...

El Niño drought increased canopy turnover in Amazon forests.

Science.gov (United States)

Leitold, Veronika; Morton, Douglas C; Longo, Marcos; Dos-Santos, Maiza Nara; Keller, Michael; Scaranello, Marcos

2018-03-25

Amazon droughts, including the 2015-2016 El Niño, may reduce forest net primary productivity and increase canopy tree mortality, thereby altering both the short- and the long-term net forest carbon balance. Given the broad extent of drought impacts, inventory plots or eddy flux towers may not capture regional variability in forest response to drought. We used multi-temporal airborne Lidar data and field measurements of coarse woody debris to estimate patterns of canopy turnover and associated carbon losses in intact and fragmented forests in the central Brazilian Amazon between 2013-2014 and 2014-2016. Average annualized canopy turnover rates increased by 65% during the drought period in both intact and fragmented forests. The average size and height of turnover events was similar for both time intervals, in contrast to expectations that the 2015-2016 El Niño drought would disproportionally affect large trees. Lidar-biomass relationships between canopy turnover and field measurements of coarse woody debris were modest (R 2  ≈ 0.3), given similar coarse woody debris production and Lidar-derived changes in canopy volume from single tree and multiple branch fall events. Our findings suggest that El Niño conditions accelerated canopy turnover in central Amazon forests, increasing coarse woody debris production by 62% to 1.22 Mg C ha -1  yr -1 in drought years . No claim to original US Government works New Phytologist © 2018 New Phytologist Trust.

Canopy seed banks as time capsules of biodiversity in pasture-remnant tree crowns.

Science.gov (United States)

Nadkarni, Nalini M; Haber, Willam A

2009-10-01

Tropical pastures present multiple barriers to tree regeneration and restoration. Relict trees serve as "regeneration foci" because they ameliorate the soil microclimate and serve as safe spots for dispersers. Here, we describe another mechanism by which remnant trees may facilitate pasture regeneration: the presence of seed banks in the canopy soil that accumulates from decomposing epiphytes within the crowns of mature remnant trees in tropical cloud forest pastures. We compared seed banks of canopy soils (histosols derived from fallen leaves, fruits, flower, and twigs of host trees and epiphytes, dead bryophytes, bark, detritus, dead animals, and microorganisms, and dust that accumulate on trunks and the upper surfaces of large branches) in pastures, canopy soils in primary forest trees, and soil on the forest floor in Monteverde, Costa Rica. There were 5211 epiphytic and terrestrial plant seeds in the three habitats. All habitats were dominated by seeds in a relatively small number of plant families, most of which were primarily woody, animal pollinated, and animal dispersed. The density of seeds on the forest floor was greater than seed density in either pasture-canopy or forest-canopy soils; the latter two did not differ. Eight species in 44 families and 61 genera from all of the habitats were tallied. There were 37 species in the pasture-canopy soil, 33 in the forest-canopy soil, and 57 on the forest floor. Eleven species were common to all habitats. The mean species richness in the pasture canopy was significantly higher than the forest canopy (F =83.38; p banks of pasture trees can function as time capsules by providing propagules that are removed in both space and time from the primary forest. Their presence may enhance the ability of pastures to regenerate more quickly, reinforcing the importance of trees in agricultural settings.

Natural canopy bridges effectively mitigate tropical forest fragmentation for arboreal mammals.

Science.gov (United States)

Gregory, Tremaine; Carrasco-Rueda, Farah; Alonso, Alfonso; Kolowski, Joseph; Deichmann, Jessica L

2017-06-20

Linear infrastructure development and resulting habitat fragmentation are expanding in Neotropical forests, and arboreal mammals may be disproportionately impacted by these linear habitat clearings. Maintaining canopy connectivity through preservation of connecting branches (i.e. natural canopy bridges) may help mitigate that impact. Using camera traps, we evaluated crossing rates of a pipeline right-of-way in a control area with no bridges and in a test area where 13 bridges were left by the pipeline construction company. Monitoring all canopy crossing points for a year (7,102 canopy camera nights), we confirmed bridge use by 25 mammal species from 12 families. With bridge use beginning immediately after exposure and increasing over time, use rates were over two orders of magnitude higher than on the ground. We also found a positive relationship between a bridge's use rate and the number of species that used it, suggesting well-used bridges benefit multiple species. Data suggest bridge use may be related to a combination of bridge branch connectivity, multiple connections, connectivity to adjacent forest, and foliage cover. Given the high use rate and minimal cost, we recommend all linear infrastructure projects in forests with arboreal mammal populations include canopy bridges.

Comparison of infrared canopy temperature in a rubber plantation and tropical rain forest

Science.gov (United States)

Song, Qing-Hai; Deng, Yun; Zhang, Yi-Ping; Deng, Xiao-Bao; Lin, You-Xing; Zhou, Li-Guo; Fei, Xue-Hai; Sha, Li-Qing; Liu, Yun-Tong; Zhou, Wen-Jun; Gao, Jin-Bo

2017-10-01

Canopy temperature is a result of the canopy energy balance and is driven by climate conditions, plant architecture, and plant-controlled transpiration. Here, we evaluated canopy temperature in a rubber plantation (RP) and tropical rainforest (TR) in Xishuangbanna, southwestern China. An infrared temperature sensor was installed at each site to measure canopy temperature. In the dry season, the maximum differences (Tc - Ta) between canopy temperature (Tc) and air temperature (Ta) in the RP and TR were 2.6 and 0.1 K, respectively. In the rainy season, the maximum (Tc - Ta) values in the RP and TR were 1.0 and -1.1 K, respectively. There were consistent differences between the two forests, with the RP having higher (Tc - Ta) than the TR throughout the entire year. Infrared measurements of Tc can be used to calculate canopy stomatal conductance in both forests. The difference in (Tc - Ta) at three gc levels with increasing direct radiation in the RP was larger than in the TR, indicating that change in (Tc - Ta) in the RP was relatively sensitive to the degree of stomatal closure.

THE PRE-PENUMBRAL MAGNETIC CANOPY IN THE SOLAR ATMOSPHERE

Energy Technology Data Exchange (ETDEWEB)

MacTaggart, David [School of Mathematics and Statistics University of Glasgow, Glasgow G12 8QW (United Kingdom); Guglielmino, Salvo L.; Zuccarello, Francesca [Dipartimento di Fisica e Astronomia—Sezione Astrofisica, Università di Catania, via S. Sofia 78, I-95123 Catania (Italy)

2016-11-01

Penumbrae are the manifestation of magnetoconvection in highly inclined (to the vertical direction) magnetic field. The penumbra of a sunspot tends to form, initially, along the arc of the umbra antipodal to the main region of flux emergence. The question of how highly inclined magnetic field can concentrate along the antipodal curves of umbrae, at least initially, remains to be answered. Previous observational studies have suggested the existence of some form of overlying magnetic canopy that acts as the progenitor for penumbrae. We propose that such overlying magnetic canopies are a consequence of how the magnetic field emerges into the atmosphere and are, therefore, part of the emerging region. We show, through simulations of twisted flux tube emergence, that canopies of highly inclined magnetic field form preferentially at the required locations above the photosphere.

Estimating the relative water content of leaves in a cotton canopy

Science.gov (United States)

Vanderbilt, Vern; Daughtry, Craig; Kupinski, Meredith; Bradley, Christine; French, Andrew; Bronson, Kevin; Chipman, Russell; Dahlgren, Robert

2017-08-01

Remotely sensing plant canopy water status remains a long term goal of remote sensing research. Established approaches to estimating canopy water status — the Crop Water Stress Index, the Water Deficit Index and the Equivalent Water Thickness — involve measurements in the thermal or reflective infrared. Here we report plant water status estimates based upon analysis of polarized visible imagery of a cotton canopy measured by ground Multi-Spectral Polarization Imager (MSPI). Such estimators potentially provide access to the plant hydrological photochemistry that manifests scattering and absorption effects in the visible spectral region.

Evaporation from rain-wetted forest in relation to canopy wetness, canopy cover, and net radiation

NARCIS (Netherlands)

Klaassen, W.

2001-01-01

Evaporation from wet canopies is commonly calculated using E-PM, the Penman-Monteith equation with zero surface resistance. However, several observations show a lower evaporation from rain-wetted forest. Possible causes for the difference between E-PM and experiments are evaluated to provide rules

Estimation of in-canopy ammonia sources and sinks in a fertilized Zea mays field

Science.gov (United States)

An analytical model was developed that describes the in-canopy vertical distribution of NH3 source and sinks and vertical fluxes in a fertilized agricultural setting using measured in-canopy concentration and wind speed profiles. This model was applied to quantify in-canopy air-s...

Biodiversity Meets the Atmosphere: A Global View of Forest Canopies

Science.gov (United States)

C. M. P. Ozanne; D. Anhuf; S. L. Boulter; M. Keller; R. L. Kitching; C. Korner; F. C. Meinzer; A. W. Mitchell; T. Nakashizuka; P. L. Silva Dias; N. E. Stork; S. J. Wright; M Yoshimura

2003-01-01

The forest canopy is the functional interface between 90% of Earth’s terrestrial biomass and the atmosphere. Multidisciplinary research in the canopy has expanded concepts of global species richness, physiological processes, and the provision of ecosystem services. Trees respond in a species-specific manner to elevated carbon dioxide levels, while climate change...

A comparison of ground-based methods for estimating canopy closure for use in phenology research

OpenAIRE

Smith, AM; Ramsay, PM

2018-01-01

Abstract Climate change is influencing tree phenology, causing earlier and more prolonged canopy closure in temperate forests. Canopy closure is closely associated with understorey light, so shifts in its timing have wide-reaching consequences for ecological processes in the understorey. Widespread monitoring of forest canopies through time is needed to understand changes in light availability during spring in particular. Canopy openness, derived from hemispherical photography, has frequently...

Development of models for thermal infrared radiation above and within plant canopies

Science.gov (United States)

Paw u, Kyaw T.

1992-01-01

Any significant angular dependence of the emitted longwave radiation could result in errors in remotely estimated energy budgets or evapotranspiration. Empirical data and thermal infrared radiation models are reviewed in reference to anisotropic emissions from the plant canopy. The biometeorological aspects of linking longwave models with plant canopy energy budgets and micrometeorology are discussed. A new soil plant atmosphere model applied to anisotropic longwave emissions from a canopy is presented. Time variation of thermal infrared emission measurements is discussed.

Bayesian estimation of seasonal course of canopy leaf area index from hyperspectral satellite data

Science.gov (United States)

Varvia, Petri; Rautiainen, Miina; Seppänen, Aku

2018-03-01

In this paper, Bayesian inversion of a physically-based forest reflectance model is investigated to estimate of boreal forest canopy leaf area index (LAI) from EO-1 Hyperion hyperspectral data. The data consist of multiple forest stands with different species compositions and structures, imaged in three phases of the growing season. The Bayesian estimates of canopy LAI are compared to reference estimates based on a spectral vegetation index. The forest reflectance model contains also other unknown variables in addition to LAI, for example leaf single scattering albedo and understory reflectance. In the Bayesian approach, these variables are estimated simultaneously with LAI. The feasibility and seasonal variation of these estimates is also examined. Credible intervals for the estimates are also calculated and evaluated. The results show that the Bayesian inversion approach is significantly better than using a comparable spectral vegetation index regression.

The dynamics of aerosol behaviour and fate within spruce canopies

International Nuclear Information System (INIS)

Ould-Dada, Zitouni

1996-01-01

The current work was intended to provide data on aerosol inputs to forest ecosystems and their subsequent fate. The background to the project was the Chernobyl accident which highlighted the importance of forests and other semi-natural ecosystems as a link in the transfer of radioactivity to man. In the aftermath of the Chernobyl accident, forests were identified as a specific type of semi-natural ecosystem for which radioecological data were almost completely absent within the countries of the European Union. Information on radionuclide behaviour and transfer in forest ecosystems was therefore needed to establish and test radiological assessment models which can be used to evaluate the likely contribution to radiological dose-to-man contaminated forests may make. The objective of this study was thus to provide data on dry deposition, resuspension and field loss of aerosols to forest canopies, in particular those of Norway spruce (Picea abies), from wind tunnel experiments conducted with small scale 'model' canopies. An aerosol generation system was developed to produce aerosol particles in the size range of 0.13-1.37 μm (VMD). Particle size distributions can be controlled within desired limits and with sufficient stability over time allowing the technique to be suitable for use in extended aerosol deposition studies. A full scale dry deposition experiment using 0.82 μm (VMAD) uranium particles was performed in the wind tunnel using Norway spruce saplings of approximately 45 cm height. Deposition velocities (V g ) were obtained and these were related to meteorological measurements (wind speed, friction velocity, turbulence intensity) inside the wind tunnel and LAI of the canopy. The latter was divided into five horizontal layers and both horizontal and vertical variations in deposition were assessed. A V g value of 0.497 cm s -1 was obtained for the canopy as a whole with the highest and lowest fluxes of 2.85 x 10 -8 and 8.14 x 10 -9 μgU cm -2 s -1 occurring at

Turbulent mixing and removal of ozone within an Amazon rainforest canopy

Science.gov (United States)

Freire, L. S.; Gerken, T.; Ruiz-Plancarte, J.; Wei, D.; Fuentes, J. D.; Katul, G. G.; Dias, N. L.; Acevedo, O. C.; Chamecki, M.

2017-03-01

Simultaneous profiles of turbulence statistics and mean ozone mixing ratio are used to establish a relation between eddy diffusivity and ozone mixing within the Amazon forest. A one-dimensional diffusion model is proposed and used to infer mixing time scales from the eddy diffusivity profiles. Data and model results indicate that during daytime conditions, the upper (lower) half of the canopy is well (partially) mixed most of the time and that most of the vertical extent of the forest can be mixed in less than an hour. During nighttime, most of the canopy is predominantly poorly mixed, except for periods with bursts of intermittent turbulence. Even though turbulence is faster than chemistry during daytime, both processes have comparable time scales in the lower canopy layers during nighttime conditions. Nonchemical loss time scales (associated with stomatal uptake and dry deposition) for the entire forest are comparable to turbulent mixing time scale in the lower canopy during the day and in the entire canopy during the night, indicating a tight coupling between turbulent transport and dry deposition and stomatal uptake processes. Because of the significant time of day and height variability of the turbulent mixing time scale inside the canopy, it is important to take it into account when studying chemical and biophysical processes happening in the forest environment. The method proposed here to estimate turbulent mixing time scales is a reliable alternative to currently used models, especially for situations in which the vertical distribution of the time scale is relevant.

Parameterization and sensitivity analyses of a radiative transfer model for remote sensing plant canopies

Science.gov (United States)

Hall, Carlton Raden

A major objective of remote sensing is determination of biochemical and biophysical characteristics of plant canopies utilizing high spectral resolution sensors. Canopy reflectance signatures are dependent on absorption and scattering processes of the leaf, canopy properties, and the ground beneath the canopy. This research investigates, through field and laboratory data collection, and computer model parameterization and simulations, the relationships between leaf optical properties, canopy biophysical features, and the nadir viewed above-canopy reflectance signature. Emphasis is placed on parameterization and application of an existing irradiance radiative transfer model developed for aquatic systems. Data and model analyses provide knowledge on the relative importance of leaves and canopy biophysical features in estimating the diffuse absorption a(lambda,m-1), diffuse backscatter b(lambda,m-1), beam attenuation alpha(lambda,m-1), and beam to diffuse conversion c(lambda,m-1 ) coefficients of the two-flow irradiance model. Data sets include field and laboratory measurements from three plant species, live oak (Quercus virginiana), Brazilian pepper (Schinus terebinthifolius) and grapefruit (Citrus paradisi) sampled on Cape Canaveral Air Force Station and Kennedy Space Center Florida in March and April of 1997. Features measured were depth h (m), projected foliage coverage PFC, leaf area index LAI, and zenith leaf angle. Optical measurements, collected with a Spectron SE 590 high sensitivity narrow bandwidth spectrograph, included above canopy reflectance, internal canopy transmittance and reflectance and bottom reflectance. Leaf samples were returned to laboratory where optical and physical and chemical measurements of leaf thickness, leaf area, leaf moisture and pigment content were made. A new term, the leaf volume correction index LVCI was developed and demonstrated in support of model coefficient parameterization. The LVCI is based on angle adjusted leaf

Incorporating Canopy Cover for Airborne-Derived Assessments of Forest Biomass in the Tropical Forests of Cambodia.

Science.gov (United States)

Singh, Minerva; Evans, Damian; Coomes, David A; Friess, Daniel A; Suy Tan, Boun; Samean Nin, Chan

2016-01-01

This research examines the role of canopy cover in influencing above ground biomass (AGB) dynamics of an open canopied forest and evaluates the efficacy of individual-based and plot-scale height metrics in predicting AGB variation in the tropical forests of Angkor Thom, Cambodia. The AGB was modeled by including canopy cover from aerial imagery alongside with the two different canopy vertical height metrics derived from LiDAR; the plot average of maximum tree height (Max_CH) of individual trees, and the top of the canopy height (TCH). Two different statistical approaches, log-log ordinary least squares (OLS) and support vector regression (SVR), were used to model AGB variation in the study area. Ten different AGB models were developed using different combinations of airborne predictor variables. It was discovered that the inclusion of canopy cover estimates considerably improved the performance of AGB models for our study area. The most robust model was log-log OLS model comprising of canopy cover only (r = 0.87; RMSE = 42.8 Mg/ha). Other models that approximated field AGB closely included both Max_CH and canopy cover (r = 0.86, RMSE = 44.2 Mg/ha for SVR; and, r = 0.84, RMSE = 47.7 Mg/ha for log-log OLS). Hence, canopy cover should be included when modeling the AGB of open-canopied tropical forests.

Canopy interaction with precipitation and sulphur deposition in two boreal forests of Quebec, Canada

International Nuclear Information System (INIS)

Marty, C.; Houle, D.; Duchesne, L.; Gagnon, C.

2012-01-01

The interaction of atmospheric sulphur (S) was investigated within the canopies of two boreal forests in Québec, Canada. The net canopy exchange approach, i.e. the difference between S–SO 4 in throughfall and precipitation, suggests high proportion of dry deposition in winter (up to 53%) as compared to summer (1–9%). However, a 3.5‰ decrease in δ 18 O–SO 4 throughfall in summer compared to incident precipitation points towards a much larger proportion of dry deposition during the warm season. We suggest that a significant fraction of dry deposition (about 1.2 kg ha −1 yr −1 , representing 30–40% of annual wet S deposition) which contributed to the decreased δ 18 O–SO 4 in throughfall was taken up by the canopy. Overall, these results showed that, contrary to what is commonly considered, S interchanges in the canopy could be important in boreal forests with low absolute atmospheric S depositions. - Highlights: ► We investigated sulphur interactions with the canopy of two boreal forests, Québec. ► Sulphur interchanges within the canopy were large and vary with seasons. ► About 1.2 kg S–SO 4 ha −1 yr −1 was taken up by the canopy during warm seasons. ► This represents 30–40% of annual wet S–SO 4 deposition. ► Canopy uptake must be considered for sulphur budget estimations in boreal forests. - The equivalent of 30–40% of annual wet S–SO 4 deposition was taken up by the canopy of two boreal forests during warm seasons.

Spatial Heterogeneity of the Forest Canopy Scales with the Heterogeneity of an Understory Shrub Based on Fractal Analysis

Directory of Open Access Journals (Sweden)

Catherine K. Denny

2017-04-01

Full Text Available Spatial heterogeneity of vegetation is an important landscape characteristic, but is difficult to assess due to scale-dependence. Here we examine how spatial patterns in the forest canopy affect those of understory plants, using the shrub Canada buffaloberry (Shepherdia canadensis (L. Nutt. as a focal species. Evergreen and deciduous forest canopy and buffaloberry shrub presence were measured with line-intercept sampling along ten 2-km transects in the Rocky Mountain foothills of west-central Alberta, Canada. Relationships between overstory canopy and understory buffaloberry presence were assessed for scales ranging from 2 m to 502 m. Fractal dimensions of both canopy and buffaloberry were estimated and then related using box-counting methods to evaluate spatial heterogeneity based on patch distribution and abundance. Effects of canopy presence on buffaloberry were scale-dependent, with shrub presence negatively related to evergreen canopy cover and positively related to deciduous cover. The effect of evergreen canopy was significant at a local scale between 2 m and 42 m, while that of deciduous canopy was significant at a meso-scale between 150 m and 358 m. Fractal analysis indicated that buffaloberry heterogeneity positively scaled with evergreen canopy heterogeneity, but was unrelated to that of deciduous canopy. This study demonstrates that evergreen canopy cover is a determinant of buffaloberry heterogeneity, highlighting the importance of spatial scale and canopy composition in understanding canopy-understory relationships.

Do Small Canopy Gaps Created by Japanese Black Bears Facilitate Fruiting of Fleshy-Fruited Plants?

Directory of Open Access Journals (Sweden)

Kazuaki Takahashi

Full Text Available Japanese black bears often break branches when climbing trees and feeding on fruit in canopies, thereby creating small canopy gaps. However, the role of black bear-created canopy gaps has not been evaluated in the context of multiple forest dynamics. Our hypothesis was that small canopy gaps created by black bears improve light conditions, which facilitates fruiting of adult fleshy-fruited plants located beneath the gaps, and also that this chain interaction depends on interactions among the size of gaps, improved light conditions, forest layers, and life form of plants. The rPPFD, size of black bear-created canopy gaps, and fruiting/non-fruiting of fleshy-fruited plants were investigated in five forest layers beneath black-bear-created canopy gaps and closed canopies of Mongolian oak (Quercus crispula. We found that light conditions improved beneath black bear-disturbed trees with canopy gaps of large size, and the effect of improvement of light conditions was reduced with descending forest layers. Fruiting of fleshy-fruited plants, especially woody lianas and trees, was facilitated by the improvement of light conditions accompanied by an increase in the size of black-bear-created gaps. Data from this study revealed that canopy disturbance by black bears was key for improving light conditions and accelerating fruiting of fleshy-fruited trees and woody lianas in the canopy layers in particular. Therefore, our hypothesis was mostly supported. Our results provide evidence that Japanese black bears have high potential as ecosystem engineers that increase the availability of resources (light and fruit in this study to other species by causing physical state changes in biotic materials (branches of Q. crispula in this study.

Do Small Canopy Gaps Created by Japanese Black Bears Facilitate Fruiting of Fleshy-Fruited Plants?

Science.gov (United States)

Takahashi, Kazuaki; Takahashi, Kaori; Washitani, Izumi

2015-01-01

Japanese black bears often break branches when climbing trees and feeding on fruit in canopies, thereby creating small canopy gaps. However, the role of black bear-created canopy gaps has not been evaluated in the context of multiple forest dynamics. Our hypothesis was that small canopy gaps created by black bears improve light conditions, which facilitates fruiting of adult fleshy-fruited plants located beneath the gaps, and also that this chain interaction depends on interactions among the size of gaps, improved light conditions, forest layers, and life form of plants. The rPPFD, size of black bear-created canopy gaps, and fruiting/non-fruiting of fleshy-fruited plants were investigated in five forest layers beneath black-bear-created canopy gaps and closed canopies of Mongolian oak (Quercus crispula). We found that light conditions improved beneath black bear-disturbed trees with canopy gaps of large size, and the effect of improvement of light conditions was reduced with descending forest layers. Fruiting of fleshy-fruited plants, especially woody lianas and trees, was facilitated by the improvement of light conditions accompanied by an increase in the size of black-bear-created gaps. Data from this study revealed that canopy disturbance by black bears was key for improving light conditions and accelerating fruiting of fleshy-fruited trees and woody lianas in the canopy layers in particular. Therefore, our hypothesis was mostly supported. Our results provide evidence that Japanese black bears have high potential as ecosystem engineers that increase the availability of resources (light and fruit in this study) to other species by causing physical state changes in biotic materials (branches of Q. crispula in this study).

Seasonal Canopy Temperatures for Normal and Okra Leaf Cotton under Variable Irrigation in the Field

Directory of Open Access Journals (Sweden)

James R. Mahan

2016-11-01

Full Text Available Temperature affects a number of physiological factors in plants and is related to water use, yield and quality in many crop species. Seasonal canopy temperature, measured with infrared thermometers, is often used in conjunction with environmental factors (e.g., air temperature, humidity, solar radiation to assess crop stress and management actions in cotton. Normal and okra leaf shapes in cotton have been associated with differences in water use and canopy temperature. The okra leaf shape in cotton is generally expected to result in lower water use and lower canopy temperatures, relative to normal leaf, under water deficits. In this study canopy temperatures were monitored in okra and normal leaf varieties for a growing season at four irrigation levels. Differences in canopy temperature (<2 °C were measured between the two leaf shapes. As irrigation levels increased, canopy temperature differences between the leaf shapes declined. At the lowest irrigation level, when differences in sensible energy exchanges due to the okra leaf shape would be enhanced, the canopy temperature of the okra leaf was warmer than the normal leaf. This suggests that varietal differences that are not related to leaf shape may have more than compensated for leaf shape differences in the canopy temperature.

Effect of Vertical Canopy Architecture on Transpiration, Thermoregulation and Carbon Assimilation

Directory of Open Access Journals (Sweden)

Tirtha Banerjee

2018-04-01

Full Text Available Quantifying the impact of natural and anthropogenic disturbances such as deforestation, forest fires and vegetation thinning among others on net ecosystem—atmosphere exchanges of carbon dioxide, water vapor and heat—is an important aspect in the context of modeling global carbon, water and energy cycles. The absence of canopy architectural variation in horizontal and vertical directions is a major source of uncertainty in current climate models attempting to address these issues. This manuscript demonstrates the importance of considering the vertical distribution of foliage density by coupling a leaf level plant biophysics model with analytical solutions of wind flow and light attenuation in a horizontally homogeneous canopy. It is demonstrated that plant physiological response in terms of carbon assimilation, transpiration and canopy surface temperature can be widely different for two canopies with the same leaf area index (LAI but different leaf area density distributions, under several conditions of wind speed, light availability, soil moisture availability and atmospheric evaporative demand.

[Canopy conductance characteristics of poplar in agroforestry system in west Liaoning Province of Northeast China].

Science.gov (United States)

Li, Zheng; Niu, Li-Hua; Yuan, Feng-Hui; Guan, De-Xin; Wang, An-Zhi; Jin, Chang-Jie; Wu, Jia-Bing

2012-11-01

By using Granier' s thermal dissipation probe, the sap flow of poplar in a poplar-maize agroforestry system in west Liaoning was continuously measured, and as well, the environmental factors such as air temperature, air humidity, net radiation, wind speed, soil temperature, and soil moisture content were synchronically measured. Based on the sap flow data, the canopy conductance of poplar was calculated with simplified Penman-Monteith equation. In the study area, the diurnal variation of poplar' s canopy conductance showed a "single peak" curve, whereas the seasonal variation showed a decreasing trend. There was a negative logarithm relationship between the canopy conductance and vapor pressure deficit, with the sensitivity of canopy conductance to vapor pressure deficit change decreased gradually from May to September. The canopy conductance had a positive relationship with solar radiation. In different months, the correlation degree of canopy conductance with environmental factors differed. The vapor pressure deficit in the whole growth period of poplar was the most significant environmental factor correlated with the canopy conductance.

The influence of multi-season imagery on models of canopy cover: A case study

Science.gov (United States)

John W. Coulston; Dennis M. Jacobs; Chris R. King; Ivey C. Elmore

2013-01-01

Quantifying tree canopy cover in a spatially explicit fashion is important for broad-scale monitoring of ecosystems and for management of natural resources. Researchers have developed empirical models of tree canopy cover to produce geospatial products. For subpixel models, percent tree canopy cover estimates (derived from fine-scale imagery) serve as the response...

Remote measurement of canopy water content in giant sequoias (Sequoiadendron giganteum) during drought

Science.gov (United States)

Martin, Roberta E.; Asner, Gregory P.; Francis, Emily; Ambrose, Anthony; Baxter, Wendy; Das, Adrian J.; Vaughn, Nicolas R.; Paz-Kagan, Tarin; Dawson, Todd E.; Nydick, Koren R.; Stephenson, Nathan L.

2018-01-01

California experienced severe drought from 2012 to 2016, and there were visible changes in the forest canopy throughout the State. In 2014, unprecedented foliage dieback was recorded in giant sequoia (Sequoiadendron giganteum) trees in Sequoia National Park, in the southern California Sierra Nevada mountains. Although visible changes in sequoia canopies can be recorded, biochemical and physiological responses to drought stress in giant sequoia canopies are not well understood. Ground-based measurements provide insight into the mechanisms of drought responses in trees, but are often limited to few individuals, especially in trees of tall stature such as giant sequoia. Recent studies demonstrate that remotely measured forest canopy water content (CWC) is a general indicator of canopy response to drought, but the underpinning leaf- to canopy-level causes of observed variation in CWC remain poorly understood. We combined field and airborne remote sensing measurements taken in 2015 and 2016 to assess the biophysical responses of giant sequoias to drought. In 49 study trees, CWC was related to leaf water potential, but not to the other foliar traits, suggesting that changes in CWC were made at whole-canopy rather than leaf scales. We found a non-random, spatially varying pattern in mapped CWC, with lower CWC values at lower elevation and along the outer edges of the groves. This pattern was also observed in empirical measurements of foliage dieback from the ground, and in mapped CWC across multiple sequoia groves in this region, supporting the hypothesis that drought stress is expressed in canopy-level changes in giant sequoias. The fact that we can clearly detect a relationship between CWC and foliage dieback, even without taking into account prior variability or new leaf growth, strongly suggests that remotely sensed CWC, and changes in CWC, are a useful measure of water stress in giant sequoia, and valuable for assessing and managing these iconic forests in drought.

Carbon isotope discrimination, ash, and canopy temperature in three wheatgrass species

International Nuclear Information System (INIS)

Frank, A.B.; Ray, I.M.; Berdahl, R.D.; Karn, J.F.

1997-01-01

Soil water is the main factor influencing forage production in the semiarid Northern Great Plains. Developing germplasm that uses limited water more efficiently would benefit forage production for hay and livestock grazing. Development of selection criteria suited to screening large breeding populations for water-use efficiency (WUE) are needed to enhance this effort. This study evaluated carbon isotope discrimination (delta), tissue ash concentration, and canopy temperature of populations of diploid crested wheatgrass (Agropyron cristatum L.), tetraploid crested wheatgrass [A. desertorum (Fisch. ex. Link) Schult.], and western wheatgrass [Pascopyrum smithii (Rybd.) Love] to determine the utility of using ash concentration and canopy temperature as alternative criteria to delta for selecting plants with high WUE. Tissue ash concentration, canopy temperature, and delta were measured on half-sib families from genetically broad-based populations of each species across two field growing seasons. Sufficient genetic variation was present for delta and ash concentration among families within each species to suggest possible use of these traits as criteria for selecting plants with higher WUE. Differences in canopy temperature among families were present only in 1994. Correlations between ash and delta were greatest for tetraploid crested wheatgrass and least for western wheatgrass. Correlation of canopy temperature with delta was significant for tetraploid crested wheatgrass both years and for diploid crested wheatgrass in 1993, but neither year for western wheatgrass. Ash concentration and delta were moderately heritable in all three grass populations, indicating that both traits are under genetic control and could likely be altered through breeding. Using ash and canopy temperature as criteria for selecting plants with greater WUE would provide a relatively low-cost, simple approach to develop cultivars with improved WUE

Spectral measurements at different spatial scales in potato: relating leaf, plant and canopy nitrogen status

Science.gov (United States)

Jongschaap, Raymond E. E.; Booij, Remmie

2004-09-01

Chlorophyll contents in vegetation depend on soil nitrogen availability and on crop nitrogen uptake, which are important management factors in arable farming. Crop nitrogen uptake is important, as nitrogen is needed for chlorophyll formation, which is important for photosynthesis, i.e. the conversion of absorbed radiance into plant biomass. The objective of this study was to estimate leaf and canopy nitrogen contents by near and remote sensing observations and to link observations at leaf, plant and canopy level. A theoretical base is presented for scaling-up leaf optical properties to whole plants and crops, by linking different optical recording techniques at leaf, plant and canopy levels through the integration of vertical nitrogen distribution. Field data come from potato experiments in The Netherlands in 1997 and 1998, comprising two potato varieties: Eersteling and Bintje, receiving similar nitrogen treatments (0, 100, 200 and 300 kg N ha -1) in varying application schemes to create differences in canopy nitrogen status during the growing season. Ten standard destructive field samplings were performed to follow leaf area index and crop dry weight evolution. Samples were analysed for inorganic nitrogen and total nitrogen contents. At sampling dates, spectral measurements were taken both at leaf level and at canopy level. At leaf level, an exponential relation between SPAD-502 readings and leaf organic nitrogen contents with a high correlation factor of 0.91 was found. At canopy level, an exponential relation between canopy organic nitrogen contents and red edge position ( λrep, nm) derived from reflectance measurements was found with a good correlation of 0.82. Spectral measurements (SPAD-502) at leaf level of a few square mm were related to canopy reflectance measurements (CropScan™) of approximately 0.44 m 2. Statistical regression techniques were used to optimise theoretical vertical nitrogen profiles that allowed scaling-up leaf chlorophyll measurements

Comparative measurements of transpiration an canopy conductance in two mixed deciduous woodlands differing in structure and species composition

DEFF Research Database (Denmark)

Herbst, Mathias; Rosier, Paul T.W.; Morecroft, Michael D.

2008-01-01

a continuous hazel (Corylus avellana L.) understory. Wytham Woods, which had an LAI of 3.6, was dominated by ash (Fraxinus excelsior L.) and sycamore (Acer pseudoplatanus L.) and had only a sparse understory. Annual canopy transpiration was 367 mm for Grimsbury Wood and 397 mm for Wytham Woods. These values...

A canopy trimming experiment in Puerto Rico: the response of litter invertebrate communities to canopy loss and debris deposition in a tropical forest subject to hurricanes

Science.gov (United States)

Barbara A. Richardson; Michael J. Richardson; Grizelle Gonzalez; Aaron B. Shiels; Diane S. Srivastava

2010-01-01

Hurricanes cause canopy removal and deposition of pulses of litter to the forest floor. A Canopy Trimming Experiment (CTE) was designed to decouple these two factors, and to investigate the separate abiotic and biotic consequences of hurricane-type damage and monitor recovery processes. As part of this experiment, effects on forest floor invertebrate communities were...

Rapid assessment of forest canopy and light regime using smartphone hemispherical photography.

Science.gov (United States)

Bianchi, Simone; Cahalan, Christine; Hale, Sophie; Gibbons, James Michael

2017-12-01

Hemispherical photography (HP), implemented with cameras equipped with "fisheye" lenses, is a widely used method for describing forest canopies and light regimes. A promising technological advance is the availability of low-cost fisheye lenses for smartphone cameras. However, smartphone camera sensors cannot record a full hemisphere. We investigate whether smartphone HP is a cheaper and faster but still adequate operational alternative to traditional cameras for describing forest canopies and light regimes. We collected hemispherical pictures with both smartphone and traditional cameras in 223 forest sample points, across different overstory species and canopy densities. The smartphone image acquisition followed a faster and simpler protocol than that for the traditional camera. We automatically thresholded all images. We processed the traditional camera images for Canopy Openness (CO) and Site Factor estimation. For smartphone images, we took two pictures with different orientations per point and used two processing protocols: (i) we estimated and averaged total canopy gap from the two single pictures, and (ii) merging the two pictures together, we formed images closer to full hemispheres and estimated from them CO and Site Factors. We compared the same parameters obtained from different cameras and estimated generalized linear mixed models (GLMMs) between them. Total canopy gap estimated from the first processing protocol for smartphone pictures was on average significantly higher than CO estimated from traditional camera images, although with a consistent bias. Canopy Openness and Site Factors estimated from merged smartphone pictures of the second processing protocol were on average significantly higher than those from traditional cameras images, although with relatively little absolute differences and scatter. Smartphone HP is an acceptable alternative to HP using traditional cameras, providing similar results with a faster and cheaper methodology. Smartphone

Effects of Corn Canopy on Seedling Emergence of Seven Weed Species

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F Kordbacheh

2012-02-01

Full Text Available In this research corn were planted in 3 densities (8, 12, 16 plant/m2 in two planting patterns (single and double-row with seven summer weed species, including redroot pigweed, green foxtail, annual bluegrass, common lambsquarter, jimsonweed, black nightshade and johnsongrass were planted. Temperature, quality and quantity of light reaching to soil surface were measured and the number of emerged seedlings for each weed species was countered in three sampling dates. Temperature fluctuation wasn't affected by density and planting patterns and was reduced with canopy formation. In all weed species 3 seedling emergence patterns were observed. In small seed species, redroot pigweed had one germination flush, so it was not respond to crop canopy. The number of emerged weed seedlings of annual bluegrass, common lambsquarter and green foxtail were significantly higher in bareground than under corn canopy. In double-row planting pattern was higher compared to the single-row and had three germination flushes. The number of emerged seedlings in the species with relatively large seeds had no significant difference between bareground and under corn canopy in jimsonweed and black nightshade. But it increased in johnsongrass under corn canopy compare to the bare ground. In all three species it was higher in double-row compare to single-row pattern. Jimsonweed had three germination flushes but blacknightshade and johnsongrass had 1 germination flush.

Efficient retrieval of vegetation leaf area index and canopy clumping factor from satellite data to support pollutant deposition assessments

International Nuclear Information System (INIS)

Nikolov, Ned; Zeller, Karl

2006-01-01

Canopy leaf area index (LAI) is an important structural parameter of the vegetation controlling pollutant uptake by terrestrial ecosystems. This paper presents a computationally efficient algorithm for retrieval of vegetation LAI and canopy clumping factor from satellite data using observed Simple Ratios (SR) of near-infrared to red reflectance. The method employs numerical inversion of a physics-based analytical canopy radiative transfer model that simulates the bi-directional reflectance distribution function (BRDF). The algorithm is independent of ecosystem type. The method is applied to 1-km resolution AVHRR satellite images to retrieve a geo-referenced data set of monthly LAI values for the conterminous USA. Satellite-based LAI estimates are compared against independent ground LAI measurements over a range of ecosystem types. Verification results suggest that the new algorithm represents a viable approach to LAI retrieval at continental scale, and can facilitate spatially explicit studies of regional pollutant deposition and trace gas exchange. - The paper presents a physics-based algorithm for retrieval of vegetation LAI and canopy-clumping factor from satellite data to assist research of pollutant deposition and trace-gas exchange. The method is employed to derive a monthly LAI dataset for the conterminous USA and verified at a continental scale

Efficient retrieval of vegetation leaf area index and canopy clumping factor from satellite data to support pollutant deposition assessments

Energy Technology Data Exchange (ETDEWEB)

Nikolov, Ned [Natural Resource Research Center, 2150 Centre Avenue, Building A, Room 368, Fort Collins, CO 80526 (United States)]. E-mail: nnikolov@fs.fed.us; Zeller, Karl [USDA FS Rocky Mountain Research Station, 240 W. Prospect Road, Fort Collins, CO 80526 (United States)]. E-mail: kzeller@fs.fed.us

2006-06-15

Canopy leaf area index (LAI) is an important structural parameter of the vegetation controlling pollutant uptake by terrestrial ecosystems. This paper presents a computationally efficient algorithm for retrieval of vegetation LAI and canopy clumping factor from satellite data using observed Simple Ratios (SR) of near-infrared to red reflectance. The method employs numerical inversion of a physics-based analytical canopy radiative transfer model that simulates the bi-directional reflectance distribution function (BRDF). The algorithm is independent of ecosystem type. The method is applied to 1-km resolution AVHRR satellite images to retrieve a geo-referenced data set of monthly LAI values for the conterminous USA. Satellite-based LAI estimates are compared against independent ground LAI measurements over a range of ecosystem types. Verification results suggest that the new algorithm represents a viable approach to LAI retrieval at continental scale, and can facilitate spatially explicit studies of regional pollutant deposition and trace gas exchange. - The paper presents a physics-based algorithm for retrieval of vegetation LAI and canopy-clumping factor from satellite data to assist research of pollutant deposition and trace-gas exchange. The method is employed to derive a monthly LAI dataset for the conterminous USA and verified at a continental scale.

Effects of diffuse radiation on canopy gas exchange processes in a forest ecosystem

Science.gov (United States)

Knohl, Alexander; Baldocchi, Dennis D.

2008-06-01

Forest ecosystems across the globe show an increase in ecosystem carbon uptake efficiency under conditions with high fraction of diffuse radiation. Here, we combine eddy covariance flux measurements at a deciduous temperate forest in central Germany with canopy-scale modeling using the biophysical multilayer model CANVEG to investigate the impact of diffuse radiation on various canopy gas exchange processes and to elucidate the underlying mechanisms. Increasing diffuse radiation enhances canopy photosynthesis by redistributing the solar radiation load from light saturated sunlit leaves to nonsaturated shade leaves. Interactions with atmospheric vapor pressure deficit and reduced leaf respiration are only of minor importance to canopy photosynthesis. The response strength of carbon uptake to diffuse radiation depends on canopy characteristics such as leaf area index and leaf optical properties. Our model computations shows that both canopy photosynthesis and transpiration increase initially with diffuse fraction, but decrease after an optimum at a diffuse fraction of 0.45 due to reduction in global radiation. The initial increase in canopy photosynthesis exceeds the increase in transpiration, leading to a rise in water-use-efficiency. Our model predicts an increase in carbon isotope discrimination with water-use-efficiency resulting from differences in the leaf-to-air vapor pressure gradient and atmospheric vapor pressure deficit. This finding is in contrast to those predicted with simple big-leaf models that do not explicitly calculate leaf energy balance. At an annual scale, we estimate a decrease in annual carbon uptake for a potential increase in diffuse fraction, since diffuse fraction was beyond the optimum for 61% of the data.

The Forest Canopy as a Temporally and Spatially Dynamic Ecosystem: Preliminary Results of Biomass Scaling and Habitat Use from a Case Study in Large Eastern White Pines (Pinus Strobus)

Science.gov (United States)

Martin, J.; Laughlin, M. M.; Olson, E.

2017-12-01

Canopy processes can be viewed at many scales and through many lenses. Fundamentally, we may wish to start by treating each canopy as a unique surface, an ecosystem unto itself. By doing so, we can may make some important observations that greatly influence our ability to scale canopies to landscape, regional and global scales. This work summarizes an ongoing endeavor to quantify various canopy level processes on individual old and large Eastern white pine trees (Pinus strobus). Our work shows that these canopies contain complex structures that vary with height and as the tree ages. This phenomenon complicates the allometric scaling of these large trees using standard methods, but detailed measurements from within the canopy provided a method to constrain scaling equations. We also quantified how these canopies change and respond to canopy disturbance, and documented disproportionate variation of growth compared to the lower stem as the trees develop. Additionally, the complex shape and surface area allow these canopies to act like ecosystems themselves; despite being relatively young and more commonplace when compared to the more notable canopies of the tropics and the Pacific Northwestern US. The white pines of these relatively simple, near boreal forests appear to house various species including many lichens. The lichen species can cover significant portions of the canopy surface area (which may be only 25 to 50 years old) and are a sizable source of potential nitrogen additions to the soils below, as well as a modulator to hydrologic cycles by holding significant amounts of precipitation. Lastly, the combined complex surface area and focused verticality offers important habitat to numerous animal species, some of which are quite surprising.

Multiyear Multiseasonal Changes in Leaf and Canopy Traits Measured by AVIRIS over Ecosystems with Different Functional Type Characteristics Through the Progressive California Drought 2013-2015

Science.gov (United States)

Ustin, S.; Roth, K. L.; Huesca, M.; Casas, A.; Adeline, K.; Drewry, D.; Koltunov, A.; Ramirez, C.

2015-12-01

Given the known heterogeneity in ecological processes within plant communities in California, we questioned whether the concept of conventional plant functional types (cPFTs) was adequate to characterize the functionality of the dominant species in these communities. We examined seasonal (spring, summer, fall) airborne AVIRIS and MASTER imagery collected during three years of progressive drought in California, and airborne LiDAR acquired once, for ecosystems that represent a wide range of plant functional types, from annual agriculture and herbaceous perennial wetlands, to forests and shrublands, including broadleaf deciduous and evergreen species and conifer species. These data were used to determine the extent to which changes in canopy chemistry could be detected, quantified, and related to leaf and canopy traits that are indicators of physiological functioning (water content, Leaf Mass Area, total C, N, and pigments (chlorophyll a, b, and carotenoids). At the canopy scale we measured leaf area index, and for forests — species, height, canopy area, DBH, deciduous or evergreen, broadleaf or needleleaf, and gap size. Strong correlations between leaf and canopy traits were predictable and quantifiable from spectroscopy data. Key structural properties of canopy height, biomass and complexity, a measure of spatial and vertical heterogeneity, were predicted by AVIRIS and validated against LiDAR data. Our data supports the hypothesis that optical sensors provide more detailed information about the distribution and variability in leaf and canopy traits related to plant functionality than cPFTs.

Abundance of green tree frogs and insects in artificial canopy gaps in a bottomland hardwood forest.

Energy Technology Data Exchange (ETDEWEB)

Horn, Scott; Hanula, James L.; Ulyshen, Michael D.; Kilgo, John C.

2005-01-01

Horn, Scott, James L. Hanula, Michael D. Ulyshen, and John C. Kilgo. 2005. Abundance of green tree frogs and insects in artificial canopy gaps in a bottomland hardwood forest. Am. Midl. Nat. 153:321-326. Abstract: We found more green tree frogs (Hyla cinerea) in canopy gaps than in closed canopy forest. Of the 331 green tree frogs observed, 88% were in canopy gaps. Likewise, higher numbers and biomasses of insects were captured in the open gap habitat. Flies were the most commonly collected insect group accounting for 54% of the total capture. These data suggest that one reason green tree frogs were more abundant in canopy gaps was the increased availability of prey and that small canopy gaps provide early successional habitats that are beneficial to green tree frog populations.

LBA-ECO LC-15 Aerodynamic Roughness Maps of Vegetation Canopies, Amazon Basin: 2000

Data.gov (United States)

National Aeronautics and Space Administration — This data set, LBA-ECO LC-15 Aerodynamic Roughness Maps of Vegetation Canopies, Amazon Basin: 2000, provides physical roughness maps of vegetation canopies in the...

Study of Canopy Structure and Growth Characters Role of Two Wheat Cultivars in Competition, on Economic Threshold and Yield of Rye and Wild Mustard

Directory of Open Access Journals (Sweden)

B. Saadatian

2012-04-01

Full Text Available To evaluate the role of effective factors on competition of two wheat cultivars against two species of narrow leaf and broad leaf weeds this study was conducted as two separated experiments based on a randomized complete block design with 3 replications at Agricultural Faculty of Bu-Ali Sina University, in 2008-2009. In both Experiments, Alvand and Sayson cultivars were planted with densities of 450 plants m-2. In the 1st experiment, rye with densities of 0, 20, 40, 60 and 80 plants m-2 were planted in inter-rows of wheat. In the 2nd experiment, wild mustard densities were 0, 8, 16, 24 and 32 plants m-2. The results showed that characters such as vertical distribution of leaf area index and dry matter, height and its increase rate in interference, emergence rate, rate of canopy development and precocity led to increasing competitive ability of Alvand than Sayson in competition with two weed species. These factors were effective in reduction seed production of weeds and economic threshold in Alvand. Despite of lower height of wild mustard than rye, distribution of leaf area and canopy structure of wild mustard increased light competition ability and shadow on crop, so that harmful effects of individual plant of wild mustard in different densities was more than rye. Increasing rate of wild mustard seed bank was more than ray.

Estimating the influence of different urban canopy cover types on atmospheric particulate matter (PM10) pollution abatement in London UK.

Science.gov (United States)

Tallis, Matthew; Freer-Smith, Peter; Sinnett, Danielle; Aylott, Matthew; Taylor, Gail

2010-05-01

In the urban environment atmospheric pollution by PM10 (particulate matter with a diameter less than 10 x 10-6 m) is a problem that can have adverse effects on human health, particularly increasing rates of respiratory disease. The main contributors to atmospheric PM10 in the urban environment are road traffic, industry and power production. The urban tree canopy is a receptor for removing PM10s from the atmosphere due to the large surface areas generated by leaves and air turbulence created by the structure of the urban forest. In this context urban greening has long been known as a mechanism to contribute towards PM10 removal from the air, furthermore, tree canopy cover has a role in contributing towards a more sustainable urban environment. The work reported here has been carried out within the BRIDGE project (SustainaBle uRban plannIng Decision support accountinG for urban mEtabolism). The aim of this project is to assess the fluxes of energy, water, carbon dioxide and particulates within the urban environment and develope a DSS (Decision Support System) to aid urban planners in sustainable development. A combination of published urban canopy cover data from ground, airborne and satellite based surveys was used. For each of the 33 London boroughs the urban canopy was classified to three groups, urban woodland, street trees and garden trees and each group quantified in terms of ground cover. The total [PM10] for each borough was taken from the LAEI (London Atmospheric Emissions Inventory 2006) and the contribution to reducing [PM10] was assessed for each canopy type. Deposition to the urban canopy was assessed using the UFORE (Urban Forest Effects Model) approach. Deposition to the canopy, boundary layer height and percentage reduction of the [PM10] in the atmosphere was assessed using both hourly meterological data and [PM10] and seasonal data derived from annual models. Results from hourly and annual data were compared with measured values. The model was then

Canopy Density Mapping on Ultracam-D Aerial Imagery in Zagros Woodlands, Iran

Science.gov (United States)

Erfanifard, Y.; Khodaee, Z.

2013-09-01

Canopy density maps express different characteristics of forest stands, especially in woodlands. Obtaining such maps by field measurements is so expensive and time-consuming. It seems necessary to find suitable techniques to produce these maps to be used in sustainable management of woodland ecosystems. In this research, a robust procedure was suggested to obtain these maps by very high spatial resolution aerial imagery. It was aimed to produce canopy density maps by UltraCam-D aerial imagery, newly taken in Zagros woodlands by Iran National Geographic Organization (NGO), in this study. A 30 ha plot of Persian oak (Quercus persica) coppice trees was selected in Zagros woodlands, Iran. The very high spatial resolution aerial imagery of the plot purchased from NGO, was classified by kNN technique and the tree crowns were extracted precisely. The canopy density was determined in each cell of different meshes with different sizes overlaid on the study area map. The accuracy of the final maps was investigated by the ground truth obtained by complete field measurements. The results showed that the proposed method of obtaining canopy density maps was efficient enough in the study area. The final canopy density map obtained by a mesh with 30 Ar (3000 m2) cell size had 80% overall accuracy and 0.61 KHAT coefficient of agreement which shows a great agreement with the observed samples. This method can also be tested in other case studies to reveal its capability in canopy density map production in woodlands.

Throughfall and its spatial variability beneath xerophytic shrub canopies within water-limited arid desert ecosystems

Science.gov (United States)

Zhang, Ya-feng; Wang, Xin-ping; Hu, Rui; Pan, Yan-xia

2016-08-01

Throughfall is known to be a critical component of the hydrological and biogeochemical cycles of forested ecosystems with inherently temporal and spatial variability. Yet little is understood concerning the throughfall variability of shrubs and the associated controlling factors in arid desert ecosystems. Here we systematically investigated the variability of throughfall of two morphological distinct xerophytic shrubs (Caragana korshinskii and Artemisia ordosica) within a re-vegetated arid desert ecosystem, and evaluated the effects of shrub structure and rainfall characteristics on throughfall based on heavily gauged throughfall measurements at the event scale. We found that morphological differences were not sufficient to generate significant difference (P < 0.05) in throughfall between two studied shrub species under the same rainfall and meteorological conditions in our study area, with a throughfall percentage of 69.7% for C. korshinskii and 64.3% for A. ordosica. We also observed a highly variable patchy pattern of throughfall beneath individual shrub canopies, but the spatial patterns appeared to be stable among rainfall events based on time stability analysis. Throughfall linearly increased with the increasing distance from the shrub base for both shrubs, and radial direction beneath shrub canopies had a pronounced impact on throughfall. Throughfall variability, expressed as the coefficient of variation (CV) of throughfall, tended to decline with the increase in rainfall amount, intensity and duration, and stabilized passing a certain threshold. Our findings highlight the great variability of throughfall beneath the canopies of xerophytic shrubs and the time stability of throughfall pattern among rainfall events. The spatially heterogeneous and temporally stable throughfall is expected to generate a dynamic patchy distribution of soil moisture beneath shrub canopies within arid desert ecosystems.

Canopy Photosynthesis: From Basics to Applications

NARCIS (Netherlands)

Hikosaka, Kouki; Niinemets, Ülo; Anten, N.P.R.

2016-01-01

A plant canopy, a collection of leaves, is an ecosystem-level unit of photosynthesis that assimilates carbon dioxide and exchanges other gases and energy with the atmosphere in a manner highly sensitive to ambient conditions including atmospheric carbon dioxide and water vapor concentrations, light

Leaf and Canopy Level Detection of Fusarium Virguliforme (Sudden Death Syndrome in Soybean

Directory of Open Access Journals (Sweden)

Ittai Herrmann

2018-03-01

Full Text Available Pre-visual detection of crop disease is critical for food security. Field-based spectroscopic remote sensing offers a method to enable timely detection, but still requires appropriate instrumentation and testing. Soybean plants were spectrally measured throughout a growing season to assess the capacity of leaf and canopy level spectral measurements to detect non-visual foliage symptoms induced by Fusarium virguliforme (Fv, which causes sudden death syndrome. Canopy reflectance measurements were made using the Piccolo Doppio dual field-of-view, two-spectrometer (400 to 1630 nm system on a tractor. Leaf level measurements were obtained, in different plots, using a handheld spectrometer (400 to 2500 nm. Partial least squares discriminant analysis (PLSDA was applied to the spectroscopic data to discriminate between Fv-inoculated and control plants. Canopy and leaf spectral data allowed identification of Fv infection, prior to visual symptoms, with classification accuracy of 88% and 91% for calibration, 79% and 87% for cross-validation, and 82% and 92% for validation, respectively. Differences in wavelengths important to prediction by canopy vs. leaf data confirm that there are different bases for accurate predictions among methods. Partial least square regression (PLSR was used on a late-stage canopy level data to predict soybean seed yield, with calibration, cross-validation and validation R2 values 0.71, 0.59 and 0.62 (p < 0.01, respectively, and validation root mean square error of 0.31 t·ha−1. Spectral data from the tractor mounted system are thus sensitive to the expression of Fv root infection at canopy scale prior to canopy symptoms, suggesting such systems may be effective for precision agricultural research and management.

Leaf and canopy photosynthesis of a chlorophyll deficient soybean mutant.

Science.gov (United States)

Sakowska, Karolina; Alberti, Giorgio; Genesio, Lorenzo; Peressotti, Alessandro; Delle Vedove, Gemini; Gianelle, Damiano; Colombo, Roberto; Rodeghiero, Mirco; Panigada, Cinzia; Juszczak, Radosław; Celesti, Marco; Rossini, Micol; Haworth, Matthew; Campbell, Benjamin W; Mevy, Jean-Philippe; Vescovo, Loris; Cendrero-Mateo, M Pilar; Rascher, Uwe; Miglietta, Franco

2018-03-02

The photosynthetic, optical, and morphological characteristics of a chlorophyll-deficient (Chl-deficient) "yellow" soybean mutant (MinnGold) were examined in comparison with 2 green varieties (MN0095 and Eiko). Despite the large difference in Chl content, similar leaf photosynthesis rates were maintained in the Chl-deficient mutant by offsetting the reduced absorption of red photons by a small increase in photochemical efficiency and lower non-photochemical quenching. When grown in the field, at full canopy cover, the mutants reflected a significantly larger proportion of incoming shortwave radiation, but the total canopy light absorption was only slightly reduced, most likely due to a deeper penetration of light into the canopy space. As a consequence, canopy-scale gross primary production and ecosystem respiration were comparable between the Chl-deficient mutant and the green variety. However, total biomass production was lower in the mutant, which indicates that processes other than steady state photosynthesis caused a reduction in biomass accumulation over time. Analysis of non-photochemical quenching relaxation and gas exchange in Chl-deficient and green leaves after transitions from high to low light conditions suggested that dynamic photosynthesis might be responsible for the reduced biomass production in the Chl-deficient mutant under field conditions. © 2018 John Wiley & Sons Ltd.

Ozone Flux Measurement and Modelling on Leaf/Shoot and Canopy Scale

Directory of Open Access Journals (Sweden)

Ludger Grünhage

Full Text Available The quantitative study of the ozone effects on agricultural and forest vegetation requires the knowledge of the pollutant dose absorbed by plants via leaf stomata, i.e. the stomatal flux. Nevertheless, the toxicologically effective dose can differ from the stomatal flux because a pool of scavenging and detoxification processes reduce the amount of pollutant responsible of the expression of the harmful effects. The measurement of the stomatal flux is not immediate and the quantification of the effective dose is still troublesome. The paper examines the conceptual aspects of ozone flux measurement and modelling in agricultural and ecological research. The ozone flux paradigm is conceptualized into a toxicological frame and faced at two different scales: leaf/shoot and canopy scales. Leaf and shoot scale flux measurements require gas-exchange enclosure techniques, while canopy scale flux measurements need a micrometeorological approach including techniques such as eddy covariance and the aerodynamical gradient. At both scales, not all the measured ozone flux is stomatal flux. In fact, a not negligible amount of ozone is destroyed on external plant surfaces, like leaf cuticles, or by gas phase reaction with biogenic volatile compounds. The stomatal portion of flux can be calculated from concurrent measurements of water vapour fluxes at both scales. Canopy level flux measurements require very fast sensors and the fulfilment of many conditions to ensure that the measurements made above the canopy really reflect the canopy fluxes (constant flux hypothesis. Again, adjustments are necessary in order to correct for air density fluctuations and sensor-surface alignment break. As far as regards flux modelling, at leaf level the stomatal flux is simply obtained by multiplying the ozone concentration on the leaf with the stomatal conductance predicted by means of physiological models fed by meteorological parameter. At canopy level the stomatal flux is

RADIATION USE EFFICIENCY IN SPRING BARLEY UNDER DROUGHT: A CROSSTALK BETWEEN SURVIVAL STRATEGY AND CANOPY STRUCTURE

Directory of Open Access Journals (Sweden)

Peter FERUS

2010-10-01

Full Text Available In order to evaluate effects of different survival strategy and canopy structure on cereal radiation use efficiency (RUE under drought during grain filling, a pot experiment in spring barley (Hordeum vulgare L. of cultivar Dobla (able for escape, no productive tiller and Kompakt (one productive tiller was conducted. There was no difference in current RUE for leaf dry mass (RUEL between main stems of tested cultivars, observed. However, in productive tillers of cultivar Kompakt it was approximately double. Taking together, RUEL for whole plants was significantly higher in cultivar Kompakt than in cultivar Dobla. Current RUE for spike dry mass (RUES in hydrated plants was markedly higher than RUEL, in main stems of cultivar Kompakt with round double values of cultivar Dobla. Productive tillers of cultivar Kompakt were the most efficient PAR (photosynthetic active radiation utilizator for spike growth. Drought decreased RUES in cultivar Kompakt (in main stems as well as productive tillers to a half but in cultivar Dobla 20 %, only. Evaluating final RUE for spikes, almost fivefold higher values in hydrated plants of cultivar Kompakt fell to double ones under drought. In this context, important role played the productive tiller. Thus, model of more intensively tillering cereal crop seems to be more efficient in radiation use.

Modelling the canopy development of bambara groundnut

DEFF Research Database (Denmark)

Karunaratne, A.S.; Azam-Ali, S.N.; Al-Shareef, I.

2010-01-01

Canopy development of bambara groundnut (Vigna subterranea (L.) Verdc) is affected by temperature stress, drought stress and photoperiod. The quantification of these documented effects by means of a suitable crop model, BAMGRO is presented in this paper. Data on canopy development from five growth...... chamber, four glasshouse and three field experiments were analyzed to calibrate and validate the BAMGRO model to produce simulations for temperature stress, drought stress and photoperiodic effect on two contrasting landraces; Uniswa Red (Swaziland) and S19-3 (Namibia). The daily initiation rate of new...... leaves is calculated by means of a Gaussian function and is altered by temperature stress, drought stress, photoperiod and plant density. The rate in dead leaf number is dependent upon the maximum senescence fraction which can be explained by physiological maturity, mutual shading, temperature stress...

Avaliação da composição química e da digestibilidade in vitro da mistura aveia IAPAR 61 (Avena strigosa Schreb + ervilha forrageira (Pisum arvense L. em diferentes alturas sob pastejo Evaluation of chemical composition and in vitro digestibility of mixture of oat IAPAR 61 (Avena strigosa Schreb cv IAPAR 61 + field pea (Pisum arvense L. under grazing in different sward heights

Directory of Open Access Journals (Sweden)

Márcia Mascarenhas Grise

2001-06-01

Full Text Available O objetivo do trabalho foi avaliar o efeito das alturas (8,9; 10,0; 11,2; 11,8; 13,3; 13,6; 14,6; 18,2 cm de pastos consorciados de aveia IAPAR 61 (Avena strigosa Schreb cv IAPAR 61 com ervilha forrageira (Pisum arvense L. sob pastejo sobre a relação folha/colmo (F/C, os teores de proteína bruta (PB, fibra em detergente neutro (FDN e fibra em detergente ácido (FDA e a digestibilidade in vitro da matéria seca (DIVMS e da matéria orgânica (DIVMO. O delineamento experimental usado foi o inteiramente casualizado, com duas repetições. A relação F/C não foi influenciada pela altura do pasto, porém apresentou comportamento quadrático com o avanço na maturidade do pasto. Os teores de PB apresentaram comportamento quadrático ao longo do período experimental, devido à interação entre altura do pasto e o tempo. Os teores de FDN e FDA mostraram um comportamento quadrático ao longo do período experimental, ocorrendo uma diminuição dos mesmos quando as plantas se apresentavam mais baixas e, uma elevação, quando as plantas estavam mais altas, isto ocorreu em função da interação das variáveis tempo e altura. A DIVMS e a DIVMO tiveram incrementos lineares em função do aumento da altura do pasto, porém com comportamento quadrático no tempo (dias em todas as alturas, sendo mais elevadas nas alturas intermediárias do pasto.The objective of this work was to evaluate the effect of different sward heights (8.9, 10.0, 11.2, 11.8; 13.3; 13.6; 14.6; 18.2 cm in the mixture of black oat IAPAR 61 (Avena strigosa Schreb cv IAPAR 61 + field pea (Pisum arvense L., under grazing, on leaf/stem ratio (L/S, crude protein (CP, neutral detergent fiber (NDF and acid detergent fiber (ADF contents and dry matter (DMIVD and of organic matter (OMIVD in vitro digestibility. A completely randomized experimental design with two replicates was used. L/S ratio was not influenced by sward height, although it presented quadratic behavior with the progress of

Influence of elevated CO2 on canopy development and red:far-red ratios in two-storied stands of Ricinus communis

International Nuclear Information System (INIS)

Arnone, J.A.; Körner, C.

1993-01-01

Vertical structure of plant stands and canopies may change under conditions of elevated CO2 due to differential responses of overstory and understory plants or plant parts. In the long term, seedling recruitment, competition, and thus population or community structure may be affected. Aside from the possible differential direct effects of elevated CO2 on photosynthesis and growth, both the quantity and quality of the light below the overstory canopy could be indirectly affected by CO2-induced changes in overstory leaf area index (LAI) and/or changes in overstory leaf quality. In order to explore such possible interactions, we compared canopy leaf area development, canopy light extinction and the quality of light beneath overstory leaves of two-storied monospecific stands of Ricinus communis exposed to ambient (340 micro litre per litre) and elevated (610 micro litre per litre) CO2. Plants in each stand were grown in a common soil as closed ''artificial ecosystems'' with a ground area of 6.7 square metre. LAI of overstory plants in all ecosystems more than doubled during the experiment but was not different between CO2 treatments at the end. As a consequence, extinction of photosynthetically active radiation (PAR) was also not altered. However, under elevated CO2 the red to far-red ratio (R:FR) measured beneath overstory leaves was 10% lower than in ecosystems treated with ambient CO2. This reduction was associated with increased thickness of palisade layers of overstory leaves and appears to be a plausible explanation for the specific enhancement of stem elongation of understory plants (without a corresponding biomass response) under elevated CO2

Modeling the bidirectional reflectance distribution function of mixed finite plant canopies and soil

Science.gov (United States)

Schluessel, G.; Dickinson, R. E.; Privette, J. L.; Emery, W. J.; Kokaly, R.

1994-01-01

An analytical model of the bidirectional reflectance for optically semi-infinite plant canopies has been extended to describe the reflectance of finite depth canopies contributions from the underlying soil. The model depends on 10 independent parameters describing vegetation and soil optical and structural properties. The model is inverted with a nonlinear minimization routine using directional reflectance data for lawn (leaf area index (LAI) is equal to 9.9), soybeans (LAI, 2.9) and simulated reflectance data (LAI, 1.0) from a numerical bidirectional reflectance distribution function (BRDF) model (Myneni et al., 1988). While the ten-parameter model results in relatively low rms differences for the BRDF, most of the retrieved parameters exhibit poor stability. The most stable parameter was the single-scattering albedo of the vegetation. Canopy albedo could be derived with an accuracy of less than 5% relative error in the visible and less than 1% in the near-infrared. Sensitivity were performed to determine which of the 10 parameters were most important and to assess the effects of Gaussian noise on the parameter retrievals. Out of the 10 parameters, three were identified which described most of the BRDF variability. At low LAI values the most influential parameters were the single-scattering albedos (both soil and vegetation) and LAI, while at higher LAI values (greater than 2.5) these shifted to the two scattering phase function parameters for vegetation and the single-scattering albedo of the vegetation. The three-parameter model, formed by fixing the seven least significant parameters, gave higher rms values but was less sensitive to noise in the BRDF than the full ten-parameter model. A full hemispherical reflectance data set for lawn was then interpolated to yield BRDF values corresponding to advanced very high resolution radiometer (AVHRR) scan geometries collected over a period of nine days. The resulting parameters and BRDFs are similar to those for the

Sunscreening fungal pigments influence the vertical gradient of pendulous lichens in boreal forest canopies.

Science.gov (United States)

Färber, Leonie; Sølhaug, Knut Asbjorn; Esseen, Per-Anders; Bilger, Wolfgang; Gauslaa, Yngvar

2014-06-01

Pendulous lichens dominate canopies of boreal forests, with dark Bryoria species in the upper canopy vs. light Alectoria and Usnea species in lower canopy. These genera offer important ecosystem services such as winter forage for reindeer and caribou. The mechanism behind this niche separation is poorly understood. We tested the hypothesis that species-specific sunscreening fungal pigments protect underlying symbiotic algae differently against high light, and thus shape the vertical canopy gradient of epiphytes. Three pale species with the reflecting pigment usnic acid (Alectoria sarmentosa, Usnea dasypoga, U. longissima) and three with dark, absorbing melanins (Bryoria capillaris, B. fremontii, B. fuscescens) were compared. We subjected the lichens to desiccation stress with and without light, and assessed their performance with chlorophyll fluorescence. Desiccation alone only affected U. longissima. By contrast, light in combination with desiccation caused photoinhibitory damage in all species. Usnic lichens were significantly more susceptible to light during desiccation than melanic ones. Thus, melanin is a more efficient light-screening pigment than usnic acid. Thereby, the vertical gradient of pendulous lichens in forest canopies is consistent with a shift in type and functioning of sunscreening pigments, from high-light-tolerant Bryoria in the upper to susceptible Alectoria and Usnea in the lower canopy.

Spectroscopic Investigation of the Canopy Configurations in Nanoparticle Organic Hybrid Materials of Various Grafting Densities during CO 2 Capture

KAUST Repository

Petit, Camille; Park, Youngjune; Lin, Kun-Yi Andrew; Park, Ah-Hyung Alissa

2012-01-01

Novel liquid-like nanoparticle organic hybrid materials (NOHMs) made of polyetheramine chains tethered onto functionalized silica nanoparticles were synthesized and characterized before and after exposure to CO 2 using NMR, Raman, and ATR FT-IR spectroscopies in order to investigate the effect of the grafting densities on the NOHM canopy structure. Considering the promising tunable properties for CO 2 capture of NOHMs, this study was conducted to provide important structural information to better design NOHMs for CO 2 capture. In order to minimize the CO 2 absorption via enthalpic effect and provide a more accurate assessment of the structural effects, the NOHMs were synthesized without task-specific groups. A greater chain ordering and decreased intermolecular interactions were observed in NOHMs compared to the unbound polymer. This was attributed to the specific structural arrangement of the frustrated canopy. The distinct configuration of grafted polymer chains caused different CO 2 packing and CO 2-induced swelling behaviors between the NOHMs and the unbound polymer. The grafting density influenced the ordering and coupling of the polymer chains and CO 2-induced swelling. Its effect on the CO 2 packing behavior was less pronounced. © 2011 American Chemical Society.

Spectroscopic Investigation of the Canopy Configurations in Nanoparticle Organic Hybrid Materials of Various Grafting Densities during CO 2 Capture

KAUST Repository

Petit, Camille

2012-01-12

Novel liquid-like nanoparticle organic hybrid materials (NOHMs) made of polyetheramine chains tethered onto functionalized silica nanoparticles were synthesized and characterized before and after exposure to CO 2 using NMR, Raman, and ATR FT-IR spectroscopies in order to investigate the effect of the grafting densities on the NOHM canopy structure. Considering the promising tunable properties for CO 2 capture of NOHMs, this study was conducted to provide important structural information to better design NOHMs for CO 2 capture. In order to minimize the CO 2 absorption via enthalpic effect and provide a more accurate assessment of the structural effects, the NOHMs were synthesized without task-specific groups. A greater chain ordering and decreased intermolecular interactions were observed in NOHMs compared to the unbound polymer. This was attributed to the specific structural arrangement of the frustrated canopy. The distinct configuration of grafted polymer chains caused different CO 2 packing and CO 2-induced swelling behaviors between the NOHMs and the unbound polymer. The grafting density influenced the ordering and coupling of the polymer chains and CO 2-induced swelling. Its effect on the CO 2 packing behavior was less pronounced. © 2011 American Chemical Society.

NDVI as a predictor of canopy arthropod biomass in the Alaskan arctic tundra.

Science.gov (United States)

Sweet, Shannan K; Asmus, Ashley; Rich, Matthew E; Wingfield, John; Gough, Laura; Boelman, Natalie T

2015-04-01

The physical and biological responses to rapid arctic warming are proving acute, and as such, there is a need to monitor, understand, and predict ecological responses over large spatial and temporal scales. The use of the normalized difference vegetation index (NDVI) acquired from airborne and satellite sensors addresses this need, as it is widely used as a tool for detecting and quantifying spatial and temporal dynamics of tundra vegetation cover, productivity, and phenology. Such extensive use of the NDVI to quantify vegetation characteristics suggests that it may be similarly applied to characterizing primary and secondary consumer communities. Here, we develop empirical models to predict canopy arthropod biomass with canopy-level measurements of the NDVI both across and within distinct tundra vegetation communities over four growing seasons in the Arctic Foothills region of the Brooks Range, Alaska, USA. When canopy arthropod biomass is predicted with the NDVI across all four growing seasons, our overall model that includes all four vegetation communities explains 63% of the variance in canopy arthropod biomass, whereas our models specific to each of the four vegetation communities explain 74% (moist tussock tundra), 82% (erect shrub tundra), 84% (riparian shrub tundra), and 87% (dwarf shrub tundra) of the observed variation in canopy arthropod biomass. Our field-based study suggests that measurements of the NDVI made from air- and spaceborne sensors may be able to quantify spatial and temporal variation in canopy arthropod biomass at landscape to regional scales.

Third Radiation Transfer Model Intercomparison (RAMI) exercise : Documenting progress in canopy reflectance models

NARCIS (Netherlands)

Widlowski, J.-L.; Taberner, M.; Pinty, B.; Bruniquel-Pinel, V.; Disney, M.; Fernandes, R.; Gastellu-Etchegorry, J.P.; Gobron, N.; Kuusk, A.; Lavergne, T.; Leblanc, S.; Lewis, P.E.; Martin, E.; Mottus, M.; North, P.R.J.; Qin, W.; Robustelli, M.; Rochdi, N.; Ruiloba, R.; Soler, C.; Thompson, R.; Verhoef, W.; Xie, D.; Thompson, R.

2007-01-01

The Radiation Transfer Model Intercomparison (RAMI) initiative benchmarks canopy reflectance models under well‐controlled experimental conditions. Launched for the first time in 1999, this triennial community exercise encourages the systematic evaluation of canopy reflectance models on a voluntary

Dry deposition and fate of radionuclides within spruce canopies

International Nuclear Information System (INIS)

Ould-Dada, Z.; Shaw, G.; Kinnersley, R.P.; Minski, M.J.

1997-01-01

The assessment of radiation dose to human populations from the release of radionuclides into the atmosphere following a nuclear accident relies on the use of simulation models. These need to be calibrated and tested using experimental data. In this study, the deposition and resuspension of radionuclides within a forest environment was investigated. Forests were identified in the aftermath of the Chernobyl accident as a specific type of semi-natural ecosystem for which radiological data were lacking within the countries of the European Union. Wind tunnel and field data have been collected for small model canopies of Norwegian spruce saplings using uranium and silica aerosol particles. These have provided quantitative estimates of the potential of a tree canopy to constitute an airborne inhalation hazard and a secondary source of airborne contamination after the initial deposition. Using these results, a multi-layer compartmental model of aerosol flux (CANDEP) has been developed and calibrated. It combines the processes of dry deposition, resuspension and field loss in individual layers of the model canopy. (5 figures; 4 tables; 15 references). (UK)

Object-Based Canopy Gap Segmentation and Classification: Quantifying the Pros and Cons of Integrating Optical and LiDAR Data

Directory of Open Access Journals (Sweden)

Jian Yang

2015-11-01

Full Text Available Delineating canopy gaps and quantifying gap characteristics (e.g., size, shape, and dynamics are essential for understanding regeneration dynamics and understory species diversity in structurally complex forests. Both high spatial resolution optical and light detection and ranging (LiDAR remote sensing data have been used to identify canopy gaps through object-based image analysis, but few studies have quantified the pros and cons of integrating optical and LiDAR for image segmentation and classification. In this study, we investigate whether the synergistic use of optical and LiDAR data improves segmentation quality and classification accuracy. The segmentation results indicate that the LiDAR-based segmentation best delineates canopy gaps, compared to segmentation with optical data alone, and even the integration of optical and LiDAR data. In contrast, the synergistic use of two datasets provides higher classification accuracy than the independent use of optical or LiDAR (overall accuracy of 80.28% ± 6.16% vs. 68.54% ± 9.03% and 64.51% ± 11.32%, separately. High correlations between segmentation quality and object-based classification accuracy indicate that classification accuracy is largely dependent on segmentation quality in the selected experimental area. The outcome of this study provides valuable insights of the usefulness of data integration into segmentation and classification not only for canopy gap identification but also for many other object-based applications.

SUNLIT AND SHADED MAIZE CANOPY WATER LOSS UNDER VARIED WATER STRESS

Directory of Open Access Journals (Sweden)

Antonio Odair Santos

1999-12-01

Full Text Available ABSTRACT The precise estimation of transpiration from plant canopies is important for the monitoring of crop water use and management of many agricultural operations related to water use planning. The aim of this study was to estimate transpiration from sunlit and shaded fractions of a maize ( Zea mays L. canopy, using the Penman-Monteith energy balance equation with modifications introduced by Fuchs et al. (1987 and Fuchs & Cohen (1989. Estimated values were validated by a heat pulse system, which was used to measure stem sap flow and by a weighing lysimeter. A relationship between incident radiation and leaf stomatal conductance for critical levels of leaf water potential was used to estimate transpiration. Results showed that computed transpiration of the shaded canopy ranged from 27 to 45% of the total transpiration when fluctuations in atmospheric demand and the level of water stress were taken in account. Hourly and daily estimates of transpiration showed agreement with lysimeter and heat pulse measurements on the well-watered plots. For the water-limited plots the precision of the estimate decreased due to difficulties in simulating the canopy stomatal conductance.

Regeneration in canopy gaps of tierra-firme forest in the Peruvian Amazon

DEFF Research Database (Denmark)

Karsten, Rune Juelsborg; Jovanovic, Milos; Meilby, Henrik

2013-01-01

the regeneration dynamics of logging gaps with naturally occuring canopy gaps. In the concession of Consorcio Forestal Amazonico in the region of Ucayali in the Peruvian Amazon, a total of 210 circular sample plots were established in 35 gaps in unmanaged natural forest and 35 canopy gaps in forest managed...

A Grid of Fine Wire Thermocouples to Study the Spatial Coherence of Turbulence within Katabatic Flow through a Vineyard Canopy

Science.gov (United States)

Everard, K.; Christen, A.; Sturman, A.; Skaloud, P.

2016-12-01

Knowledge of the dynamics and thermodynamics of katabatic flow is relevant in vineyards, where grapevines are sensitive to temperature changes (frost protection and cooling). Basic understanding of the occurrence and evolution of, and turbulence within, katabatic flow is well known over bare slopes. However, little work has been completed to extend this understanding to mid-sized canopies and how the presence of a canopy affects the turbulent exchange of momentum and heat within the flow. Measurements were carried out over a 6° vineyard slope near Oliver, BC, Canada in the Okanagan Valley between July 5 and July 22, 2016. The set-up consisted of an array of five vertically arranged CSAT 3D (Campbell Scientific, Inc.) ultrasonic anemometers at z = 0.45 m, 0.90 m, 1.49 m, 2.34 m, and 4.73 m above ground level (AGL), and a 2-D grid of 40 Type-E (copper-constantan) fine-wire thermocouples (FWTC) arranged at the same heights as the CSAT 3D array on 8 masts extending in the upslope (flow) direction at locations x = 0.0 m (CSAT 3D tower), 0.5 m, 1.0 m, 2.0 m, 4.0 m, 8.0 m, 16.0 m, and 32.0 m. The FWTC array formed a sheet of 40 sampling points in the upslope-vertical plane. The height of the grapevine canopy (h) was approximately 2 m AGL, and rows were aligned along the local slope direction with a row spacing of 2.45 m. CSAT-3s were sampled at 60 Hz with 20 Hz data recording, the FWTCs were sampled at 2 Hz, all synchronized by a data logger. Katabatic flow was observed on several nights during the campaign, with a wind speed maximum located within the canopy. This contribution will focus on the measurement techniques, combining ultrasonic anemometer data with the spatially synchronized FWTC array using image process techniques. We identify the dynamics and structure of the katabatic flow, relevant for heat exchange, using the spatial coherence of the temperature field given by the FWTC array. Improved knowledge of the vertical structure and the dynamics of katabatic

A New Mechanism of Canopy Effect in Unsaturated Freezing Soils

Directory of Open Access Journals (Sweden)

Teng Jidong

2016-01-01

Full Text Available Canopy effect refers to the phenomenon where moisture accumulates underneath an impervious cover. Field observation reveals that canopy effect can take place in relatively dry soils where the groundwater table is deep and can lead to full saturation of the soil immediately underneath the impervious cover. On the other hand, numerical analysis based on existing theories of heat and mass transfer in unsaturated soils can only reproduce a minor amount of moisture accumulation due to an impervious cover, particularly when the groundwater table is relatively deep. In attempt to explain the observed canopy effect in field, this paper proposes a new mechanism of moisture accumulation in unsaturated freezing soils: vapour transfer in such a soil is accelerated by the process of vapour-ice desublimation. A new approach for modelling moisture and heat movements is proposed, in which the phase change of evaporation, condensation and de-sublimation of vapor flow are taken into account. The computed results show that the proposed model can indeed reproduce the unusual moisture accumulation observed in relatively dry soils. The results also demonstrate that soil freezing fed by vapour transfer can result in a water content close to full saturation. Since vapour transfer is seldom considered in geotechnical design, the canopy effect deserves more attention during construction and earth works in cold and arid regions.

Estimation of Airborne Lidar-Derived Tropical Forest Canopy Height Using Landsat Time Series in Cambodia

Directory of Open Access Journals (Sweden)

Tetsuji Ota

2014-11-01

Full Text Available In this study, we test and demonstrate the utility of disturbance and recovery information derived from annual Landsat time series to predict current forest vertical structure (as compared to the more common approaches, that consider a sample of airborne Lidar and single-date Landsat derived variables. Mean Canopy Height (MCH was estimated separately using single date, time series, and the combination of single date and time series variables in multiple regression and random forest (RF models. The combination of single date and time series variables, which integrate disturbance history over the entire time series, overall provided better MCH prediction than using either of the two sets of variables separately. In general, the RF models resulted in improved performance in all estimates over those using multiple regression. The lowest validation error was obtained using Landsat time series variables in a RF model (R2 = 0.75 and RMSE = 2.81 m. Combining single date and time series data was more effective when the RF model was used (opposed to multiple regression. The RMSE for RF mean canopy height prediction was reduced by 13.5% when combining the two sets of variables as compared to the 3.6% RMSE decline presented by multiple regression. This study demonstrates the value of airborne Lidar and long term Landsat observations to generate estimates of forest canopy height using the random forest algorithm.

Drivers and variability of the Chl fluorescence emission spectrum from the leaf through the canopy

Science.gov (United States)

Magney, T. S.; Frankenberg, C.; Grossman, K.; Koehler, P.; North, G.; Porcar-Castell, A.; Stutz, J.; Fisher, J.

2017-12-01

Recent advances in the retrieval of solar induced chlorophyll fluorescence (SIF) from remote sensing platforms provide a significant step towards mapping instantaneous plant photosynthesis across space and time. However, our current understanding of the variability and controls on the shape of the chlorophyll fluorescence (ChlF) spectrum is limited. To address these uncertainties, we have developed instrumentation to make highly resolved spectral measurements of SIF from both leaf and canopy scales. At the leaf scale, we simultaneously collected active (PAM) and passive (675-850 nm) fluorescence with photosynthesis across a range of species and conditions; and at the canopy scale, diurnal and seasonal Fraunhofer-based SIF retrievals across the red and far-red spectrum are made at four different flux tower sites (Costa Rica, Iowa (2), and Colorado). From both of these scales we are able to determine (1) the variability in steady-state spectra across species and individuals; and (2) the environmental, functional, and structural controls on SIF. Here we report on the sensitivity of SIF spectra from a singular value decomposition analysis; and present on the mechanisms - pigment concentration, species, non-photochemical and photochemical quenching, and environmental conditions - controlling SIF variability. Further, we will discuss how an improved understanding of leaf-level variability can inform canopy level SIF, and ultimately how such information may enable proper interpretation of satellite retrievals.

Canopy area of large trees explains aboveground biomass variations across neotropical forest landscapes

Science.gov (United States)

Meyer, Victoria; Saatchi, Sassan; Clark, David B.; Keller, Michael; Vincent, Grégoire; Ferraz, António; Espírito-Santo, Fernando; d'Oliveira, Marcus V. N.; Kaki, Dahlia; Chave, Jérôme

2018-06-01

Large tropical trees store significant amounts of carbon in woody components and their distribution plays an important role in forest carbon stocks and dynamics. Here, we explore the properties of a new lidar-derived index, the large tree canopy area (LCA) defined as the area occupied by canopy above a reference height. We hypothesize that this simple measure of forest structure representing the crown area of large canopy trees could consistently explain the landscape variations in forest volume and aboveground biomass (AGB) across a range of climate and edaphic conditions. To test this hypothesis, we assembled a unique dataset of high-resolution airborne light detection and ranging (lidar) and ground inventory data in nine undisturbed old-growth Neotropical forests, of which four had plots large enough (1 ha) to calibrate our model. We found that the LCA for trees greater than 27 m (˜ 25-30 m) in height and at least 100 m2 crown size in a unit area (1 ha), explains more than 75 % of total forest volume variations, irrespective of the forest biogeographic conditions. When weighted by average wood density of the stand, LCA can be used as an unbiased estimator of AGB across sites (R2 = 0.78, RMSE = 46.02 Mg ha-1, bias = -0.63 Mg ha-1). Unlike other lidar-derived metrics with complex nonlinear relations to biomass, the relationship between LCA and AGB is linear and remains unique across forest types. A comparison with tree inventories across the study sites indicates that LCA correlates best with the crown area (or basal area) of trees with diameter greater than 50 cm. The spatial invariance of the LCA-AGB relationship across the Neotropics suggests a remarkable regularity of forest structure across the landscape and a new technique for systematic monitoring of large trees for their contribution to AGB and changes associated with selective logging, tree mortality and other types of tropical forest disturbance and dynamics.

Remote sensing of canopy nitrogen at regional scale in Mediterranean forests using the spaceborne MERIS Terrestrial Chlorophyll Index

Science.gov (United States)

Loozen, Yasmina; Rebel, Karin T.; Karssenberg, Derek; Wassen, Martin J.; Sardans, Jordi; Peñuelas, Josep; De Jong, Steven M.

2018-05-01

Canopy nitrogen (N) concentration and content are linked to several vegetation processes. Therefore, canopy N concentration is a state variable in global vegetation models with coupled carbon (C) and N cycles. While there are ample C data available to constrain the models, widespread N data are lacking. Remotely sensed vegetation indices have been used to detect canopy N concentration and canopy N content at the local scale in grasslands and forests. Vegetation indices could be a valuable tool to detect canopy N concentration and canopy N content at larger scale. In this paper, we conducted a regional case-study analysis to investigate the relationship between the Medium Resolution Imaging Spectrometer (MERIS) Terrestrial Chlorophyll Index (MTCI) time series from European Space Agency (ESA) Envisat satellite at 1 km spatial resolution and both canopy N concentration (%N) and canopy N content (N g m-2, of ground area) from a Mediterranean forest inventory in the region of Catalonia, in the northeast of Spain. The relationships between the datasets were studied after resampling both datasets to lower spatial resolutions (20, 15, 10 and 5 km) and at the original spatial resolution of 1 km. The results at higher spatial resolution (1 km) yielded significant log-linear relationships between MTCI and both canopy N concentration and content: r2 = 0.32 and r2 = 0.17, respectively. We also investigated these relationships per plant functional type. While the relationship between MTCI and canopy N concentration was strongest for deciduous broadleaf and mixed plots (r2 = 0.24 and r2 = 0.44, respectively), the relationship between MTCI and canopy N content was strongest for evergreen needleleaf trees (r2 = 0.19). At the species level, canopy N concentration was strongly related to MTCI for European beech plots (r2 = 0.69). These results present a new perspective on the application of MTCI time series for canopy N detection.

Effects of canopy structural variables on retrieval of leaf dry matter content and specific leaf area from remotely sensed data

NARCIS (Netherlands)

Ali, A.M.; Darvishzadeh, R.; Skidmore, A.K.; van Duren, I.C.

2016-01-01

Leaf dry matter content (LDMC) and specific leaf area (SLA) are two important traits in measuring biodiversity. To use remote sensing for the estimation of these traits, it is essential to understand the underlying factors that influence their relationships with canopy reflectance. The effect of

Testing the Suitability of a Terrestrial 2D LiDAR Scanner for Canopy Characterization of Greenhouse Tomato Crops

Directory of Open Access Journals (Sweden)

Jordi Llop

2016-09-01

Full Text Available Canopy characterization is essential for pesticide dosage adjustment according to vegetation volume and density. It is especially important for fresh exportable vegetables like greenhouse tomatoes. These plants are thin and tall and are planted in pairs, which makes their characterization with electronic methods difficult. Therefore, the accuracy of the terrestrial 2D LiDAR sensor is evaluated for determining canopy parameters related to volume and density and established useful correlations between manual and electronic parameters for leaf area estimation. Experiments were performed in three commercial tomato greenhouses with a paired plantation system. In the electronic characterization, a LiDAR sensor scanned the plant pairs from both sides. The canopy height, canopy width, canopy volume, and leaf area were obtained. From these, other important parameters were calculated, like the tree row volume, leaf wall area, leaf area index, and leaf area density. Manual measurements were found to overestimate the parameters compared with the LiDAR sensor. The canopy volume estimated with the scanner was found to be reliable for estimating the canopy height, volume, and density. Moreover, the LiDAR scanner could assess the high variability in canopy density along rows and hence is an important tool for generating canopy maps.

Comparing RIEGL RiCOPTER UAV LiDAR Derived Canopy Height and DBH with Terrestrial LiDAR.

Science.gov (United States)

Brede, Benjamin; Lau, Alvaro; Bartholomeus, Harm M; Kooistra, Lammert

2017-10-17

In recent years, LIght Detection And Ranging (LiDAR) and especially Terrestrial Laser Scanning (TLS) systems have shown the potential to revolutionise forest structural characterisation by providing unprecedented 3D data. However, manned Airborne Laser Scanning (ALS) requires costly campaigns and produces relatively low point density, while TLS is labour intense and time demanding. Unmanned Aerial Vehicle (UAV)-borne laser scanning can be the way in between. In this study, we present first results and experiences with the RIEGL RiCOPTER with VUX ® -1UAV ALS system and compare it with the well tested RIEGL VZ-400 TLS system. We scanned the same forest plots with both systems over the course of two days. We derived Digital Terrain Model (DTMs), Digital Surface Model (DSMs) and finally Canopy Height Model (CHMs) from the resulting point clouds. ALS CHMs were on average 11.5 c m higher in five plots with different canopy conditions. This showed that TLS could not always detect the top of canopy. Moreover, we extracted trunk segments of 58 trees for ALS and TLS simultaneously, of which 39 could be used to model Diameter at Breast Height (DBH). ALS DBH showed a high agreement with TLS DBH with a correlation coefficient of 0.98 and root mean square error of 4.24 c m . We conclude that RiCOPTER has the potential to perform comparable to TLS for estimating forest canopy height and DBH under the studied forest conditions. Further research should be directed to testing UAV-borne LiDAR for explicit 3D modelling of whole trees to estimate tree volume and subsequently Above-Ground Biomass (AGB).

Variation in foliar respiration and wood CO2 efflux rates among species and canopy layers in a wet tropical forest.

Science.gov (United States)

Asao, Shinichi; Bedoya-Arrieta, Ricardo; Ryan, Michael G

2015-02-01

As tropical forests respond to environmental change, autotrophic respiration may consume a greater proportion of carbon fixed in photosynthesis at the expense of growth, potentially turning the forests into a carbon source. Predicting such a response requires that we measure and place autotrophic respiration in a complete carbon budget, but extrapolating measurements of autotrophic respiration from chambers to ecosystem remains a challenge. High plant species diversity and complex canopy structure may cause respiration rates to vary and measurements that do not account for this complexity may introduce bias in extrapolation more detrimental than uncertainty. Using experimental plantations of four native tree species with two canopy layers, we examined whether species and canopy layers vary in foliar respiration and wood CO2 efflux and whether the variation relates to commonly used scalars of mass, nitrogen (N), photosynthetic capacity and wood size. Foliar respiration rate varied threefold between canopy layers, ∼0.74 μmol m(-2) s(-1) in the overstory and ∼0.25 μmol m(-2) s(-1) in the understory, but little among species. Leaf mass per area, N and photosynthetic capacity explained some of the variation, but height explained more. Chamber measurements of foliar respiration thus can be extrapolated to the canopy with rates and leaf area specific to each canopy layer or height class. If area-based rates are sampled across canopy layers, the area-based rate may be regressed against leaf mass per area to derive the slope (per mass rate) to extrapolate to the canopy using the total leaf mass. Wood CO2 efflux varied 1.0-1.6 μmol m(-2) s(-1) for overstory trees and 0.6-0.9 μmol m(-2) s(-1) for understory species. The variation in wood CO2 efflux rate was mostly related to wood size, and little to species, canopy layer or height. Mean wood CO2 efflux rate per surface area, derived by regressing CO2 efflux per mass against the ratio of surface

Mapping forest canopy fuels in Yellowstone National Park using lidar and hyperspectral data

Science.gov (United States)

Halligan, Kerry Quinn

The severity and size of wildland fires in the forested western U.S have increased in recent years despite improvements in fire suppression efficiency. This, along with increased density of homes in the wildland-urban interface, has resulted in high costs for fire management and increased risks to human health, safety and property. Crown fires, in comparison to surface fires, pose an especially high risk due to their intensity and high rate of spread. Crown fire models require a range of quantitative fuel parameters which can be difficult and costly to obtain, but advances in lidar and hyperspectral sensor technologies hold promise for delivering these inputs. Further research is needed, however, to assess the strengths and limitations of these technologies and the most appropriate analysis methodologies for estimating crown fuel parameters from these data. This dissertation focuses on retrieving critical crown fuel parameters, including canopy height, canopy bulk density and proportion of dead canopy fuel, from airborne lidar and hyperspectral data. Remote sensing data were used in conjunction with detailed field data on forest parameters and surface reflectance measurements. A new method was developed for retrieving Digital Surface Model (DSM) and Digital Canopy Models (DCM) from first return lidar data. Validation data on individual tree heights demonstrated the high accuracy (r2 0.95) of the DCMs developed via this new algorithm. Lidar-derived DCMs were used to estimate critical crown fire parameters including available canopy fuel, canopy height and canopy bulk density with linear regression model r2 values ranging from 0.75 to 0.85. Hyperspectral data were used in conjunction with Spectral Mixture Analysis (SMA) to assess fuel quality in the form of live versus dead canopy proportions. Severity and stage of insect-caused forest mortality were estimated using the fractional abundance of green vegetation, non-photosynthetic vegetation and shade obtained from

Water Level Controls on Sap Flux of Canopy Species in Black Ash Wetlands

Science.gov (United States)

Joseph Shannon; Matthew Van Grinsven; Joshua Davis; Nicholas Bolton; Nam Noh; Thomas Pypker; Randall Kolka

2018-01-01

Black ash (Fraxinus nigra Marsh.) exhibits canopy dominance in regularly inundated wetlands, suggesting advantageous adaptation. Black ash mortality due to emerald ash borer (Agrilus planipennis Fairmaire) will alter canopy composition and site hydrology. Retention of these forested wetlands requires understanding black ash...

Heavy particle transport in a trellised agricultural canopy during non-row-aligned winds

Science.gov (United States)

Agricultural systems are exposed to and influenced by particles of many types (e.g., pathogens, pollen, pests), the concentrations of which are typically highest in the regions immediately surrounding their sources. The intermittent nature of trellised canopies creates an unique canopy architecture ...

Radiative transfer within seagrass canopies: impact on carbon budgets and light requirements

Science.gov (United States)

Zimmerman, Richard C.; Mobley, Curtis D.

1997-02-01

Seagrasses are ecologically important but extremely vulnerable to anthropogenic modifications of the coastal zone that affect light availability within these unique ecosystems. Strongly pigmented seagrass leaves can extend for more than 1 m above the substrate and biomass is distributed unevenly throughout the canopy. in this study, light attenuation in a 7 m water column that contained a seagrass canopy extending 1.5 m above the bottom was calculated by the radiative transfer model Hydrolight using the spectral absorbance of eelgrass leaves and a non-uniform vertical distribution of biomass. Runs were performed in clear and turbid water columns, over san d and mud substrates, and with shoot densities ranging from 25 to 200 m-2 using solar angles for both winter and summer solstices. The flux of photosynthetically active irradiance (EPAR) reaching the top of the seagrass canopy was twice as high in summer compared to winter, and in clear water compared to turbid water. Sediment type had a measurable effect on EPAR only within the bottom third of the canopy. Light penetration within the canopy was inversely proportional to shoot density. Introduction of daylength and a sinusoidal distribution of EPAR throughout the day greatly increased the importance of solar elevation on daily integrated production relative to water column turbidity and sediment type. Shoot-specific productivity decreased and the position of maximum shoot productivity within the canopy shallowed as shoot density increased. Positive net photosynthesis for entire shoots was possible only when plant density was lower than 100 shoots m-2 in winter; values consistent with field observations. Although very simplistic with regard to inherent optical properties of real seagrass leaves, this model was able to generate estimates of maximum sustainable shoot density that were fully testable by, and wholly consistent with, field observations.

ForestCrowns: a transparency estimation tool for digital photographs of forest canopies

Science.gov (United States)

Matthew Winn; Jeff Palmer; S.-M. Lee; Philip Araman

2016-01-01

ForestCrowns is a Windows®-based computer program that calculates forest canopy transparency (light transmittance) using ground-based digital photographs taken with standard or hemispherical camera lenses. The software can be used by forest managers and researchers to monitor growth/decline of forest canopies; provide input for leaf area index estimation; measure light...

Vines and canopy contact: a route for snake predation on parrot nests.

Science.gov (United States)

SUSAN E. KOENIG; JOSEPH M. WUNDERLE; ERNESTO C. ENKERLINHOEFLICH

2007-01-01

Ornithologists have hypothesized that some tropical forest birds avoid snake predation by nesting in isolated trees that do not have vines and canopy contact with neighbouring trees. Here we review two complementary studies that support this hypothesis by demonstrating (1) that an abundance of vines and an interlocking canopy characterized Jamaican Black-billed Parrot...

Effects of Kaolin Application on Light Absorption and Distribution, Radiation Use Efficiency and Photosynthesis of Almond and Walnut Canopies

Science.gov (United States)

Rosati, Adolfo; Metcalf, Samuel G.; Buchner, Richard P.; Fulton, Allan E.; Lampinen, Bruce D.

2007-01-01

Background and Aims Kaolin applied as a suspension to plant canopies forms a film on leaves that increases reflection and reduces absorption of light. Photosynthesis of individual leaves is decreased while the photosynthesis of the whole canopy remains unaffected or even increases. This may result from a better distribution of light within the canopy following kaolin application, but this explanation has not been tested. The objective of this work was to study the effects of kaolin application on light distribution and absorption within tree canopies and, ultimately, on canopy photosynthesis and radiation use efficiency. Methods Photosynthetically active radiation (PAR) incident on individual leaves within the canopy of almond (Prunus dulcis) and walnut (Juglans regia) trees was measured before and after kaolin application in order to study PAR distribution within the canopy. The PAR incident on, and reflected and transmitted by, the canopy was measured on the same day for kaolin-sprayed and control trees in order to calculate canopy PAR absorption. These data were then used to model canopy photosynthesis and radiation use efficiency by a simple method proposed in previous work, based on the photosynthetic response to incident PAR of a top-canopy leaf. Key Results Kaolin increased incident PAR on surfaces of inner-canopy leaves, although there was an estimated 20 % loss in PAR reaching the photosynthetic apparatus, due to increased reflection. Assuming a 20 % loss of PAR, modelled photosynthesis and photosynthetic radiation use efficiency (PRUE) of kaolin-coated leaves decreased by only 6·3 %. This was due to (1) more beneficial PAR distribution within the kaolin-sprayed canopy, and (2) with decreasing PAR, leaf photosynthesis decreases less than proportionally, due to the curvature of the photosynthesis response-curve to PAR. The relatively small loss in canopy PRUE (per unit of incident PAR), coupled with the increased incident PAR on the leaf surface on

Automated lidar-derived canopy height estimates for the Upper Mississippi River System

Science.gov (United States)

Hlavacek, Enrika

2015-01-01

Land cover/land use (LCU) classifications serve as important decision support products for researchers and land managers. The LCU classifications produced by the U.S. Geological Survey’s Upper Midwest Environmental Sciences Center (UMESC) include canopy height estimates that are assigned through manual aerial photography interpretation techniques. In an effort to improve upon these techniques, this project investigated the use of high-density lidar data for the Upper Mississippi River System to determine canopy height. An ArcGIS tool was developed to automatically derive height modifier information based on the extent of land cover features for forest classes. The measurement of canopy height included a calculation of the average height from lidar point cloud data as well as the inclusion of a local maximum filter to identify individual tree canopies. Results were compared to original manually interpreted height modifiers and to field survey data from U.S. Forest Service Forest Inventory and Analysis plots. This project demonstrated the effectiveness of utilizing lidar data to more efficiently assign height modifier attributes to LCU classifications produced by the UMESC.

Towards a High Temporal Frequency Grass Canopy Thermal IR Model for Background Signatures

Science.gov (United States)

Ballard, Jerrell R., Jr.; Smith, James A.; Koenig, George G.

2004-01-01

In this paper, we present our first results towards understanding high temporal frequency thermal infrared response from a dense plant canopy and compare the application of our model, driven both by slowly varying, time-averaged meteorological conditions and by high frequency measurements of local and within canopy profiles of relative humidity and wind speed, to high frequency thermal infrared observations. Previously, we have employed three-dimensional ray tracing to compute the intercepted and scattered radiation fluxes and for final scene rendering. For the turbulent fluxes, we employed simple resistance models for latent and sensible heat with one-dimensional profiles of relative humidity and wind speed. Our modeling approach has proven successful in capturing the directional and diurnal variation in background thermal infrared signatures. We hypothesize that at these scales, where the model is typically driven by time-averaged, local meteorological conditions, the primary source of thermal variance arises from the spatial distribution of sunlit and shaded foliage elements within the canopy and the associated radiative interactions. In recent experiments, we have begun to focus on the high temporal frequency response of plant canopies in the thermal infrared at 1 second to 5 minute intervals. At these scales, we hypothesize turbulent mixing plays a more dominant role. Our results indicate that in the high frequency domain, the vertical profile of temperature change is tightly coupled to the within canopy wind speed In the results reported here, the canopy cools from the top down with increased wind velocities and heats from the bottom up at low wind velocities. .

Chlorophyll fluorescence tracks seasonal variations of photosynthesis from leaf to canopy in a temperate forest.

Science.gov (United States)

Yang, Hualei; Yang, Xi; Zhang, Yongguang; Heskel, Mary A; Lu, Xiaoliang; Munger, J William; Sun, Shucun; Tang, Jianwu

2017-07-01

Accurate estimation of terrestrial gross primary productivity (GPP) remains a challenge despite its importance in the global carbon cycle. Chlorophyll fluorescence (ChlF) has been recently adopted to understand photosynthesis and its response to the environment, particularly with remote sensing data. However, it remains unclear how ChlF and photosynthesis are linked at different spatial scales across the growing season. We examined seasonal relationships between ChlF and photosynthesis at the leaf, canopy, and ecosystem scales and explored how leaf-level ChlF was linked with canopy-scale solar-induced chlorophyll fluorescence (SIF) in a temperate deciduous forest at Harvard Forest, Massachusetts, USA. Our results show that ChlF captured the seasonal variations of photosynthesis with significant linear relationships between ChlF and photosynthesis across the growing season over different spatial scales (R 2  = 0.73, 0.77, and 0.86 at leaf, canopy, and satellite scales, respectively; P chlorophyll content (R 2  = 0.65 for canopy GPP SIF and chlorophyll content; P < 0.0001), leaf area index (LAI) (R 2  = 0.35 for canopy GPP SIF and LAI; P < 0.0001), and normalized difference vegetation index (NDVI) (R 2  = 0.36 for canopy GPP SIF and NDVI; P < 0.0001). Our results suggest that ChlF can be a powerful tool to track photosynthetic rates at leaf, canopy, and ecosystem scales. © 2016 John Wiley & Sons Ltd.

Relationships between soil-based management zones and canopy sensing for corn nitrogen management

Science.gov (United States)

Integrating soil-based management zones (MZ) with crop-based active canopy sensors to direct spatially variable nitrogen (N) applications has been proposed for improving N fertilizer management of corn (Zea mays L.). Analyses are needed to evaluate relationships between canopy sensing and soil-based...

The fauna and flora of a kelp bed canopy | Allen | African Zoology

African Journals Online (AJOL)

The fauna and flora of the canopy of a kelp bed off Oudekraal, on the Cape Peninsula, Is surveyed. Four species of epiphytic algae occur In the kelp canopy, three restricted to Ecklonia maxima and the fourth to Laminaria pallida. Epiphyte biomass is equivalent to 4-9% of host standing crop amongst E. maxima, but less than ...

Can Canopy Uptake Influence Nitrogen Acquisition and Allocation by Trees?

Science.gov (United States)

Nair, Richard; Perks, Mike; Mencuccini, Maurizio

2015-04-01

Nitrogen (N) fertilization due to atmospheric deposition of anthropogenic nitrogen (NDEP) may explain some of the net carbon (C) sink (0.6-0.7 Pg y-1) in temperate forests, but estimates of the additional C uptake due to atmospheric N additions (ΔCΔN) can vary by over an order of magnitude (~ 5 to 200 ΔCΔN). High estimates from several recent studies [e.g. Magnani (2007), Nature 447 848-850], deriving ΔCΔN from regional correlations between NDEP and measures of C uptake (such as eddy covariance -derived net ecosystem production, or forest inventory data) contradict estimates from other studies of 15N tracer applications added as fertilizer to the forest floor. A strong ΔCΔN effect requires nitrogen to be efficiently acquired by trees and allocated to high C:N, long-lived woody tissues, but these isotope experiments typically report relatively little (~ 20 %) of 15N added is found above-ground, with estimates are often attributed to co-variation with other factors across the range of sites investigated. However 15N-fertilization treatments often impose considerably higher total N loads than ambient NDEP and almost exclusively only apply mineral 15N treatments to the soil, often in a limited number of treatment events over relatively short periods of time. Excessive N deposition loads can induce negative physiological effects and limit the resulting ΔCΔN observed, and applying treatments to the soil may ignore the importance of canopy nitrogen uptake in overall forest nutrition. As canopies can directly take up nitrogen, the chronic, (relatively) low levels of ambient NDEP inputs from pollution may be acquired without some of the effects of heavy N loads, obtaining this N before it reaches the soil, and allowing canopies to substitute for, or supplement, edaphic N nutrition. The strength of this effect depends on how much N uptake can occur across the canopy under field conditions, and if this extra N supplies growth in woody tissues such as the stem, as

Leaf nitrogen assimilation and partitioning differ among subtropical forest plants in response to canopy addition of nitrogen treatments

Science.gov (United States)

Nan Liu; Shuhua Wu; Qinfeng Guo; Jiaxin Wang; Ce Cao; Jun Wang

2018-01-01

Global increases in nitrogen deposition may alter forest structure and function by interferingwith plant nitrogen metabolism (e.g., assimilation and partitioning) and subsequent carbon assimilation, but it is unclear how these responses to nitrogen deposition differ among species. In this study, we conducted a 2-year experiment to investigate the effects of canopy...

A state-space modeling approach to estimating canopy conductance and associated uncertainties from sap flux density data.

Science.gov (United States)

Bell, David M; Ward, Eric J; Oishi, A Christopher; Oren, Ram; Flikkema, Paul G; Clark, James S

2015-07-01

Uncertainties in ecophysiological responses to environment, such as the impact of atmospheric and soil moisture conditions on plant water regulation, limit our ability to estimate key inputs for ecosystem models. Advanced statistical frameworks provide coherent methodologies for relating observed data, such as stem sap flux density, to unobserved processes, such as canopy conductance and transpiration. To address this need, we developed a hierarchical Bayesian State-Space Canopy Conductance (StaCC) model linking canopy conductance and transpiration to tree sap flux density from a 4-year experiment in the North Carolina Piedmont, USA. Our model builds on existing ecophysiological knowledge, but explicitly incorporates uncertainty in canopy conductance, internal tree hydraulics and observation error to improve estimation of canopy conductance responses to atmospheric drought (i.e., vapor pressure deficit), soil drought (i.e., soil moisture) and above canopy light. Our statistical framework not only predicted sap flux observations well, but it also allowed us to simultaneously gap-fill missing data as we made inference on canopy processes, marking a substantial advance over traditional methods. The predicted and observed sap flux data were highly correlated (mean sensor-level Pearson correlation coefficient = 0.88). Variations in canopy conductance and transpiration associated with environmental variation across days to years were many times greater than the variation associated with model uncertainties. Because some variables, such as vapor pressure deficit and soil moisture, were correlated at the scale of days to weeks, canopy conductance responses to individual environmental variables were difficult to interpret in isolation. Still, our results highlight the importance of accounting for uncertainty in models of ecophysiological and ecosystem function where the process of interest, canopy conductance in this case, is not observed directly. The StaCC modeling

Effect of smoke on subcanopy shaded light, canopy temperature, and carbon dioxide uptake in an Amazon rainforest

OpenAIRE

Doughty, C. E.; Flanner, M. G.; Goulden, M. L.

2010-01-01

Daytime Net Ecosystem CO2 uptake (NEE) in an Amazon forest has been shown to increase significantly during smoky periods associated with biomass burning. We investigated whether the increase in CO2 uptake is caused by increased irradiance in the lower canopy, which results from increased above-canopy diffuse light, or by decreased canopy temperature, which results from decreased above-canopy net radiation. We used Sun photometers measuring aerosol optical depth to find nonsmoky (Aerosol Optic...

Does canopy mean N concentration explain differences in light use efficiency in 14 eddy-covariance sites?

Science.gov (United States)

Peltoniemi, Mikko; Pulkkinen, Minna; Kolari, Pasi; Mäkelä, Annikki

2010-05-01

Production efficiency models aim at explaining variation of vegetation productivity with climatic input and information on vegetation cover often obtained from satellite observations. It has been acknowledged that different plant species differ in their potential to assimilate carbon dioxide per unit of PAR (i.e light use efficiency, LUE). Subsequently, some LUE-based models apply different LUE-coefficients for different plant functional types. Leaf N concentrations differ between plant species, and related differences in light saturated photosynthesis rate (A_max) have been detected. How much these differences affect the ecosystem production or LUE is more obscure. Canopies acclimate to prevailing environmental conditions, which causes variation e.g. in the proportion of leaves exposed to direct sunlight, leaf morphology, structure,orientation, and vertical N distibution. Furthermore, a fair proportion of photosynthesis occurs during cloudy days, in which case high A_max is unessential, and number of these days differs by location. We studied if canopy mean N concentration could explain differences in LUE derived for 14 forest sites using eddy-covariance measurements. The largest actual LUE was estimated for each site directly as an upper percentile of the ratio of Gross Primary Production (GPP) to absorbed PAR. Potential LUE for each site, on the other hand, was estimated by parameterising a LUE-based production efficiency model (Prelued), which accounts for daily changes in weather (temperature, VPD, PAR). In this model structure, the LUE-parameter for each site, can be interpreted as the potential LUE under optimal environmental conditions, i.e when the environment is not limiting production at all. Averages of the largest actual LUE and potential LUE were higher in deciduous sites than in conifer sites. Canopy mean N correlated weakly with both the largest actual and potential LUE, and the correlation was also significant in conifer subset in the former case

Seasonal variability of interception evaporation from the canopy of a mixed deciduous forest

DEFF Research Database (Denmark)

Herbst, Mathias; Rosier, Paul T.W.; McNeil, David D.

2008-01-01

and the different aerodynamic properties of the canopy. Together with the lower average rainfall rate this counterbalanced the reduced storage capacity of the leafless canopy and maintained a relatively high interception loss throughout the year being 29% of the gross rainfall in the leafed period and 20...

Integrating soil information into canopy sensor algorithms for improved corn nitrogen rate recommendation

Science.gov (United States)

Crop canopy sensors have proven effective at determining site-specific nitrogen (N) needs, but several Midwest states use different algorithms to predict site-specific N need. The objective of this research was to determine if soil information can be used to improve the Missouri canopy sensor algori...

The relationship between sward structure, ingestive behavior and ...

African Journals Online (AJOL)

Animals adjusted biting rates to compensate for changes in bite size and thus maintained rates of intake. Bite size and dietary CP were negatively correlated. It was argued that, in the present study, leaf table height, stemminess, leaf density and leaf % were the main determinants of dietary CP and ingestive behaviour.

Moderate water stress from regulated deficit irrigation decreases transpiration similarly to net carbon exchange in grapevine canopies

Science.gov (United States)

To determine the effects of timing and extent of regulated deficit irrigation (RDI) on grapevine (Vitis vinifera) canopies, whole-canopy transpiration (TrV) and canopy conductance to water vapor (gc) were calculated from whole-vine gas exchange near key stages of fruit development. The vines were ma...

Germination and establishment of Tillandsia eizii (Bromeliaceae) in the canopy of an oak forest in Chiapas, Mexico

NARCIS (Netherlands)

Toledo-Aceves, T.; Wolf, J.H.D.

2008-01-01

We assessed the effectiveness of repopulating the inner canopy and middle canopy of oak trees with seeds and seedlings of the epiphytic bromeliad Tillandsia eizii. Canopy germination was 4.7 percent, considerably lower than in vitro (92%). Of the tree-germinated seedlings, only 1.5 percent survived

The third RAdiation transfer Model Intercomparison (RAMI) exercise: Documenting progress in canopy reflectance models

NARCIS (Netherlands)

Widlowski, J.L.; Taberner, M.; Pinty, B.; Bruniquel-Pinel, V.; Disney, M.I.; Fernandes, R.; Gastellu-Etchegorry, J.P.; Gobron, N.; Kuusk, A.; Lavergne, T.; LeBlanc, S.; Lewis, P.E.; Martin, E.; Mõttus, M.; North, P.R.J.; Qin, W.; Robustelli, M.; Rochdi, N.; Ruiloba, R.; Thompson, R.; Verhoef, W.; Verstraete, M.M.; Xie, D.

2007-01-01

[1] The Radiation Transfer Model Intercomparison ( RAMI) initiative benchmarks canopy reflectance models under well-controlled experimental conditions. Launched for the first time in 1999, this triennial community exercise encourages the systematic evaluation of canopy reflectance models on a

Physiological characteristics of high yield under cluster planting: photosynthesis and canopy microclimate of cotton

Directory of Open Access Journals (Sweden)

Ting-ting Xie

2016-01-01

Full Text Available Cotton produces more biomass and economic yield when cluster planting pattern (three plants per hole than in a traditional planting pattern (one plant per hole, even at similar plant densities, indicating that individual plant growth is promoted by cluster planting. The causal factors for this improved growth induced by cluster planting pattern, the light interception, canopy microclimate and photosynthetic rate of cotton were investigated in an arid region of China. The results indicated that the leaf area index and light interception were higher in cluster planting, and significantly different from those in traditional planting during the middle and late growth stages. Cotton canopy humidity at different growth stages was increased but canopy temperatures were reduced by cluster planting. In the later growth stage of cluster planting, the leaf chlorophyll content was higher and the leaf net photosynthetic rate and canopy photosynthetic rate were significantly increased in comparing with traditional planting pattern. We concluded that differences in canopy light interception and photosynthetic rate were the primary factors responsible for increased biomass production and economic yield in cluster planting compared with the traditional planting of cotton.

Intra-Urban Variability in Elemental Carbon Deposition to Tree Canopies

Science.gov (United States)

Barrett, T. E.; Ponette-González, A.; Rindy, J. E.; Sheesley, R. J.

2017-12-01

Urban areas cover biomass combustion, EC is a powerful climate-forcing agent and a significant component of fine particulate matter in urban atmospheres. Thus, understanding the factors that govern EC removal in urban areas could help mitigate climate change, while improving air quality for urban residents. EC particles can be removed from the atmosphere in precipitation (wet and fog deposition) or they can settle directly onto receptor surfaces (dry deposition). Only limited measurements indicate that EC deposition is higher in urban than in rural and remote regions. However, EC deposition likely exhibits considerable intra-urban variability, with tree canopies serving as potentially important sinks for EC on the cityscape. The goal of this research is to quantify spatial variability in total (wet + dry) EC deposition to urban tree canopies in the Dallas-Fort Worth Metroplex. Using a stratified non-random sampling design, 41 oak trees (22 post oak (Quercus stellata) and 19 live oak (Quercus virginiana)) were selected near (100 m) for measurements of throughfall (water that falls from the canopy to the forest floor). Additionally, 16 bulk rainfall samplers were deployed in grassy areas with no canopy cover. Results from one rain event indicate a volume weighted mean concentration of 83 µg EC L-1 in post oak throughfall, 36 µg EC L-1 in live oak throughfall, and 4 µg EC L-1 in bulk rainfall. Total EC deposition to oak tree canopies was 2.0 ± 2.1 (SD) mg m-2 for post oak and 0.7 ± 0.3 mg m-2 for live oak. Bulk rainfall deposition was 0.08 ± 0.1 mg m-2. Our preliminary findings show that trees are effective urban air filters, removing 9-25 times more EC from the atmosphere than rainwater alone. Resolving surface controls on atmospheric EC removal is key to developing and assessing near-term climate and air quality mitigation strategies.

Evidence for substantial forestry canopy processing of nitrogen deposition using isotopic tracer experiments in low deposition conditions

Science.gov (United States)

Ferraretto, Daniele; Heal, Kate

2017-04-01

Temperate forest ecosystems are significant sinks for nitrogen deposition (Ndep) yielding benefits such as protection of waterbodies from eutrophication and enhanced sequestration of atmospheric CO2. Previous studies have shown evidence of biological nitrification and Ndep processing and retention in forest canopies. However, this was reported only at sites with high environmental or experimentally enhanced rates of Ndep (˜18 kg N ha-1 y-1) and has not yet been demonstrated in low Ndep environments. We have used bulk field hydrochemical measurements and labelled isotopic experiments to assess canopy processing in a lower Ndep environment (˜7 kg N ha-1 year-1) at a Sitka spruce plantation in Perthshire, Scotland, representing the dominant tree species (24%) in woodlands in Great Britain. Analysis of 4.5 years of measured N fluxes in rainfall (RF) and fogwater onto the canopy and throughfall (TF) and stemflow (SF) below the canopy suggests strong transformation and uptake of Ndep in the forest canopy. Annual canopy Ndep uptake was ˜4.7 kg N ha-1 year-1, representing 60-76% of annual Ndep. To validate these plot-scale results and track N uptake within the forest canopy in different seasons, double 15N-labelled NH4NO3 (98%) solution was sprayed in summer and winter onto the canopy of three trees at the measurement site. RF, TF and SF samples have been collected and analysed for 15NH4 and 15NO3. Comparing the amount of labelled N recovered under the sample trees with the measured δ15N signal is expected to provide further evidence of the role of forest canopies in actively processing and retaining atmospheric N deposition.

30 CFR 75.1710 - Canopies or cabs; diesel-powered and electric face equipment.

Science.gov (United States)

2010-07-01

...-powered and electric face equipment, including shuttle cars, be provided with substantially constructed... 30 Mineral Resources 1 2010-07-01 2010-07-01 false Canopies or cabs; diesel-powered and electric... Miscellaneous § 75.1710 Canopies or cabs; diesel-powered and electric face equipment. In any coal mine where the...

A leaf gas exchange model that accounts for intra-canopy variability by considering leaf nitrogen content and local acclimation to radiation in grapevine (Vitis vinifera L.).

Science.gov (United States)

Prieto, Jorge A; Louarn, Gaëtan; Perez Peña, Jorge; Ojeda, Hernán; Simonneau, Thierry; Lebon, Eric

2012-07-01

Understanding the distribution of gas exchange within a plant is a prerequisite for scaling up from leaves to canopies. We evaluated whether leaf traits were reliable predictors of the effects of leaf ageing and leaf irradiance on leaf photosynthetic capacity (V(cmax) , J(max) ) in field-grown vines (Vitis vinifera L). Simultaneously, we measured gas exchange, leaf mass per area (LMA) and nitrogen content (N(m) ) of leaves at different positions within the canopy and at different phenological stages. Daily mean leaf irradiance cumulated over 10 d (PPFD(10) ) was obtained by 3D modelling of the canopy structure. N(m) decreased over the season in parallel to leaf ageing while LMA was mainly affected by leaf position. PPFD(10) explained 66, 28 and 73% of the variation of LMA, N(m) and nitrogen content per area (N(a) ), respectively. Nitrogen content per unit area (N(a) = LMA × N(m) ) was the best predictor of the intra-canopy variability of leaf photosynthetic capacity. Finally, we developed a classical photosynthesis-stomatal conductance submodel and by introducing N(a) as an input, the model accurately simulated the daily pattern of gas exchange for leaves at different positions in the canopy and at different phenological stages during the season. © 2012 Blackwell Publishing Ltd.

Water-borne hyphomycetes in tree canopies of Kaiga (Western Ghats, India

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Naga M. Sudheep

2013-12-01

Full Text Available The canopy samples such as trapped leaf litter, trapped sediment (during summer, stemflow and throughfall (during monsoon from five common riparian tree species (Artocarpus heterophyllus, Cassia fistula, Ficus recemosa, Syzygium caryophyllatum and Xylia xylocarpa in Kaiga forest stand of the Western Ghats of southwest India were evaluated for the occurrence of water-borne hyphomycetes. Partially decomposed trapped leaf litter was incubated in bubble chambers followed by filtration to assess conidial output. Sediments accumulated in tree holes or junction of branches were shaken with sterile leaf disks in distilled water followed by incubation of leaf disks in bubble chamber and filtration to find out colonized fungi. Stemflow and throughfall samples were filtered directly to collect free conidia. From five canopy niches, a total of 29 water-borne hyphomycetes were recovered. The species richness was higher in stemflow and throughfall than trapped leaf litter and sediments (14-16 vs. 6-10 species. Although sediments of Syzygium caryophyllatum were acidic (5.1, the conidial output was higher than other tree species. Stemflow and throughfall of Xylea xylocarpa even though alkaline (8.5-8.7 showed higher species richness (6-12 species as well as conidial load than rest of the tree species. Flagellospora curvula and Triscelophorus acuminatus were common in trapped leaf litter and sediments respectively, while conidia of Anguillospora crassa and A. longissima were frequent in stemflow and throughfall. Diversity of water-borne hyphomycetes was highest in throughfall of Xylea xylocarpa followed by throughfall of Ficus recemosa. Our study reconfirms the occurrence and survival of diverse water-borne hyphomycetes in different niches of riparian tree canopies of the Western Ghats during wet and dry regimes and predicts their possible role in canopy as saprophytes, endophytes and alternation of life cycle between canopy and aquatic habitats.

Temporal and spatial variations of canopy temperature over a C3C4 mixture grassland

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Shimoda, S.; Oikawa, T.

2006-10-01

This study discusses the photosynthetic pathway types involved in canopy temperature measurements on a mixed grassland consisting of C3 and C4 plants (dominant species in biomass were Solidago altissima (C3), Miscanthus sinensis (C4), and Imperata cylindrica (C4)). In the wet conditions immediately after the rainy season, the mean canopy temperature for S. altissima was the lowest among the dominant species, mainly due to its leaf conductance being twice as large as the other two species. Despite using the same C4 photosynthetic pathway, M. sinensis had a lower apparent canopy temperature than I. cylindrica due to a smaller proportion of sunlit elements in the field of view. In the dry conditions during late July, the mean canopy temperatures of the three dominant species were within 0.3 °C of one another. These results can be explained by poor water conditions for C3 species (S. altissima). The simultaneous survey of vegetation and thermal imaging can help clarify characteristics of C3 and C4 canopy temperature over complicated grassland.

The effect of canopy closure on chimpanzee nest abundance in Lagoas de Cufada National Park, Guinea-Bissau.

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Sousa, Joana; Casanova, Catarina; Barata, André V; Sousa, Cláudia

2014-04-01

The present study aimed to gather baseline information about chimpanzee nesting and density in Lagoas de Cufada Natural Park (LCNP), in Guinea-Bissau. Old and narrow trails were followed to estimate chimpanzee density through marked-nest counts and to test the effect of canopy closure (woodland savannah, forest with a sparse canopy, and forest with a dense canopy) on nest distribution. Chimpanzee abundance was estimated at 0.79 nest builders/km(2), the lowest among the areas of Guinea-Bissau with currently studied chimpanzee populations. Our data suggest that sub-humid forest with a dense canopy accounts for significantly higher chimpanzee nest abundance (1.50 nests/km of trail) than sub-humid forest with a sparse canopy (0.49 nests/km of trail) or woodland savannah (0.30 nests/km of trail). Dense-canopy forests play an important role in chimpanzee nesting in the patchy and highly humanized landscape of LCNP. The tree species most frequently used for nesting are Dialium guineense (46%) and Elaeis guineensis (28%). E. guineensis contain nests built higher in the canopy, while D. guineense contain nests built at lower heights. Nests observed during baseline sampling and replications suggest seasonal variations in the tree species used for nest building.

Temporal Variability of Canopy Light Use Efficiency and its Environmental Controls in a Subtropical Mangrove Wetland

Science.gov (United States)

Zhu, X.

2016-12-01

Mangrove wetlands play an important role in global carbon cycle due to their strong carbon sequestration resulting from high plant carbon assimilation and low soil respiration. However, temporal variability of carbon sequestration in mangrove wetlands is less understood since carbon processes of mangrove wetlands are influenced by many complicated and concurrent environmental controls including tidal activities, site climate and soil conditions. Canopy light use efficiency (LUE), is the most important plant physiological parameter that can be used to describe the temporal dynamics of canopy photosynthesis, and therefore a better characterization of temporal variability of canopy LUE will improve our understanding in mangrove photosynthesis and carbon balance. One of our aims is to study the temporal variability of canopy LUE and its environmental controls in a subtropical mangrove wetland. Half-hourly canopy LUE is derived from eddy covariance (EC) carbon flux and photosynthesis active radiation observations, and half-hourly environmental controls we measure include temperature, humidity, precipitation, radiation, tidal height, salinity, etc. Another aim is to explore the links between canopy LUE and spectral indices derived from near-surface tower-based remote sensing (normalized difference vegetation index, enhanced vegetation index, photochemical reflectance index, solar-induced chlorophyll fluorescence, etc.), and then identify potential quantitative relationships for developing remote sensing-based estimation methods of canopy LUE. At present, some instruments in our in-situ observation system have not yet been installed (planned in next months) and therefore we don't have enough measurements to support our analysis. However, a preliminary analysis of our historical EC and climate observations in past several years indicates that canopy LUE shows strong temporal variability and is greatly affected by environmental factors such as tidal activity. Detailed and

Analyzing transient closed chamber effects on canopy gas exchange for optimizing flux calculation timing

NARCIS (Netherlands)

Langensiepen, M.; Kupisch, M.; Wijk, van M.T.; Ewert, F.

2012-01-01

Transient type canopy chambers are still the only currently available practical solution for rapid screening of gas-exchange in agricultural fields. The technique has been criticized for its effect on canopy microclimate during measurement which affects the transport regime and regulation of plant

Cockpit canopy shattering using exploding wire techniques

International Nuclear Information System (INIS)

Novac, B M; Smith, I R; Downs, P R; Marston, P; Fahey, D

2007-01-01

This paper presents the principal experimental results provided by a preliminary investigation into the possibility of using exploding wire (EW) techniques to shatter the plastic cockpit canopy of a modern jet aircraft. The data provided forms the basis for a qualitative understanding of the physics of interaction between the plasma produced by an EW and the surrounding elasto-plastic material in which the wire is embedded. To optimize the shock-wave 'clean cutting' effect, the significance of the material, the dimensions of the exploding wire and the amplitude of the current and voltage pulses are all considered. This leads to important conclusions concerning both the characteristics of the EW and the optimum arrangement of the electrical circuit, with the single most important optimization factor being the peak electrical power input to the EW, rather than the dissipated Joule energy. A full-scale system relevant to an actual cockpit canopy shattering is outlined and relevant results are presented and discussed

Processes of ammonia air–surface exchange in a fertilized Zea mays canopy

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E. Nemitz

2013-02-01

Full Text Available Recent incorporation of coupled soil biogeochemical and bi-directional NH3 air–surface exchange algorithms into regional air quality models holds promise for further reducing uncertainty in estimates of NH3 emissions from fertilized soils. While this represents a significant advancement over previous approaches, the evaluation and improvement of such modeling systems for fertilized crops requires process-level field measurements over extended periods of time that capture the range of soil, vegetation, and atmospheric conditions that drive short-term (i.e., post-fertilization and total growing season NH3 fluxes. This study examines the processes of NH3 air–surface exchange in a fertilized corn (Zea mays canopy over the majority of a growing season to characterize soil emissions after fertilization and investigate soil–canopy interactions. Micrometeorological flux measurements above the canopy, measurements of soil, leaf apoplast and dew/guttation chemistry, and a combination of in-canopy measurements, inverse source/sink, and resistance modeling were employed. Over a period of approximately 10 weeks following fertilization, daily mean and median net canopy-scale fluxes yielded cumulative total N losses of 8.4% and 6.1%, respectively, of the 134 kg N ha−1 surface applied to the soil as urea ammonium nitrate (UAN. During the first month after fertilization, daily mean emission fluxes were positively correlated with soil temperature and soil volumetric water. Diurnally, maximum hourly average fluxes of ≈ 700 ng N m−2 s−1 occurred near mid-day, coincident with the daily maximum in friction velocity. Net emission was still observed 5 to 10 weeks after fertilization, although mid-day peak fluxes had declined to ≈ 125 ng N m−2 s−1. A key finding of the surface chemistry measurements was the observation of high pH (7.0–8.5 in leaf dew/guttation, which reduced the ability of the canopy to recapture soil emissions during wet periods

Improving representation of canopy temperatures for modeling subcanopy incoming longwave radiation to the snow surface

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Webster, Clare; Rutter, Nick; Jonas, Tobias

2017-09-01

A comprehensive analysis of canopy surface temperatures was conducted around a small and large gap at a forested alpine site in the Swiss Alps during the 2015 and 2016 snowmelt seasons (March-April). Canopy surface temperatures within the small gap were within 2-3°C of measured reference air temperature. Vertical and horizontal variations in canopy surface temperatures were greatest around the large gap, varying up to 18°C above measured reference air temperature during clear-sky days. Nighttime canopy surface temperatures around the study site were up to 3°C cooler than reference air temperature. These measurements were used to develop a simple parameterization for correcting reference air temperature for elevated canopy surface temperatures during (1) nighttime conditions (subcanopy shortwave radiation is 0 W m-2) and (2) periods of increased subcanopy shortwave radiation >400 W m-2 representing penetration of shortwave radiation through the canopy. Subcanopy shortwave and longwave radiation collected at a single point in the subcanopy over a 24 h clear-sky period was used to calculate a nighttime bulk offset of 3°C for scenario 1 and develop a multiple linear regression model for scenario 2 using reference air temperature and subcanopy shortwave radiation to predict canopy surface temperature with a root-mean-square error (RMSE) of 0.7°C. Outside of these two scenarios, reference air temperature was used to predict subcanopy incoming longwave radiation. Modeling at 20 radiometer locations throughout two snowmelt seasons using these parameterizations reduced the mean bias and RMSE to below 10 W m s-2 at all locations.

Effects of changing canopy directional reflectance on feature selection

Science.gov (United States)

Smith, J. A.; Oliver, R. E.; Kilpela, O. E.

1973-01-01

The use of a Monte Carlo model for generating sample directional reflectance data for two simplified target canopies at two different solar positions is reported. Successive iterations through the model permit the calculation of a mean vector and covariance matrix for canopy reflectance for varied sensor view angles. These data may then be used to calculate the divergence between the target distributions for various wavelength combinations and for these view angles. Results of a feature selection analysis indicate that different sets of wavelengths are optimum for target discrimination depending on sensor view angle and that the targets may be more easily discriminated for some scan angles than others. The time-varying behavior of these results is also pointed out.

Quantifying structural and physiological controls on variation in canopy transpiration among planted pine and hardwood species in the southern Appalachians

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Chelcy R. Ford; Robert M. Hubbard; James M. Vose

2010-01-01

Recent studies have shown that planted pine stands exhibit higher evapotranspiration (ET) and are more sensitive to climatic conditions compared with hardwood stands. Whether this is due to management and stand effects, biological effects or their interaction is poorly understood. We estimated growing season canopy- and sap flux-scaled leaf-level transpiration (Ec and...

Assessing a Template Matching Approach for Tree Height and Position Extraction from Lidar-Derived Canopy Height Models of Pinus Pinaster Stands

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Francesco Pirotti

2010-10-01

Full Text Available In this paper, an assessment of a method using a correlation filter over a lidar-derived digital canopy height model (CHM is presented. The objective of the procedure is to obtain stem density, position, and height values, on a stand with the following characteristics: ellipsoidal canopy shape (Pinus pinaster, even-aged and single-layer structure. The process consists of three steps: extracting a correlation map from CHM by applying a template whose size and shape resembles the canopy to be detected, applying a threshold mask to the correlation map to keep a subset of candidate-pixels, and then applying a local maximum filter to the remaining pixel groups. The method performs satisfactorily considering the experimental conditions. The mean tree extraction percentage is 65% with a coefficient of agreement of 0.4. The mean absolute error of height is ~0.5 m for all plots except one. It can be considered a valid approach for extracting tree density and height in regularly spaced stands (i.e., poplar plantations which are fundamental for extracting related forest parameters such as volume and biomass.

Do changes in the azimuthal distribution of maize leaves over time affect canopy light absorption?

International Nuclear Information System (INIS)

Drouet, J.L.; Moulia, B.; Bonhomme, R.

1999-01-01

In maize canopies, when modelling the architecture and light regime one usually assumes leaf azimuths are distributed uniformly. Once we had demonstrated azimuthal re-orientation of maize leaves during the vegetative phase, we tested the weight of this hypothesis on the light absorbed daily by the canopy. We thus modelled the three-dimensional (3D) geometry of maize canopies with various plant densities and at different developmental stages using plant digitizing under field conditions. We simulated radiative transfer using a volume-based approach within actual and hypothetical canopies, obtained by simply rearranging leaf azimuths. Simulations indicated that changes to horizontal heterogeneity have little effect on daily light absorption efficiency. It is concluded that changes in leaf azimuths do not have to be taken into account in crop-functioning models. (author) [fr

Low-cost Assessment for Early Vigor and Canopy Cover Estimation in Durum Wheat Using RGB Images.

Science.gov (United States)

Fernandez-Gallego, J. A.; Kefauver, S. C.; Aparicio Gutiérrez, N.; Nieto-Taladriz, M. T.; Araus, J. L.

2017-12-01

Early vigor and canopy cover is an important agronomical component for determining grain yield in wheat. Estimates of the canopy cover area at early stages of the crop cycle may contribute to efficiency of crop management practices and breeding programs. Canopy-image segmentation is complicated in field conditions by numerous factors, including soil, shadows and unexpected objects, such as rocks, weeds, plant remains, or even part of the photographer's boots (many times it appears in the scene); and the algorithms must be robust to accommodate these conditions. Field trials were carried out in two sites (Aranjuez and Valladolid, Spain) during the 2016/2017 crop season. A set of 24 varieties of durum wheat in two growing conditions (rainfed and support irrigation) per site were used to create the image database. This work uses zenithal RGB images taken from above the crop in natural light conditions. The images were taken with Canon IXUS 320HS camera in Aranjuez, holding the camera by hand, and with a Nikon D300 camera in Valladolid, using a monopod. The algorithm for early vigor and canopy cover area estimation uses three main steps: (i) Image decorrelation (ii) Colour space transformation and (iii) Canopy cover segmentation using an automatic threshold based on the image histogram. The first step was chosen to enhance the visual interpretation and separate the pixel colors into the scene; the colour space transformation contributes to further separate the colours. Finally an automatic threshold using a minimum method allows for correct segmentation and quantification of the canopy pixels. The percent of area covered by the canopy was calculated using a simple algorithm for counting pixels in the final binary segmented image. The comparative results demonstrate the algorithm's effectiveness through significant correlations between early vigor and canopy cover estimation compared to NDVI (Normalized difference vegetation index) and grain yield.

Irrigation and fruit canopy position modify oil quality of olive trees (cv. Frantoio).

Science.gov (United States)

Caruso, Giovanni; Gucci, Riccardo; Sifola, Maria Isabella; Selvaggini, Roberto; Urbani, Stefania; Esposto, Sonia; Taticchi, Agnese; Servili, Maurizio

2017-08-01

Fruit development and oil quality in Olea europaea L. are strongly influenced by both light and water availability. In the present study, the simultaneous effects of light environment and irrigation on fruit characteristics and oil quality were studied in a high-density orchard over two consecutive years. Olive fruits were harvested from three canopy positions (intercepting approximately 64%, 42% and 30% of above canopy radiation) of fully-productive trees subjected to full, deficit or complementary irrigation. Fruits receiving 61-67% of above canopy radiation showed the highest fruit weight, mesocarp oil content and maturation index, whereas those intercepting only 27-33% showed the lowest values. Palmitoleic and linoleic acids increased in oils obtained from fruits exposed to high light levels, whereas oleic acid and the oleic-linoleic acid ratio decreased. Neither canopy position, nor irrigation affected K 232 , K 270 , ΔK and the concentration of lignan in virgin olive oils (VOOs). Total phenols, 3,4-DHPEA-EDA [2-(3,4-hydroxyphenyl)ethyl (3S,4E)-4-formyl-3-(2-oxoethyl)hex-4-enoate] and p-HPEA-EDA (decarboxymethyl ligstroside-aglycone) increased in VOOs produced from fruits harvested from the top of the canopy, whereas full irrigation decreased total phenols and 3,4-DHPEA-EDA concentrations with respect to the complementary irrigation treatment. Light and water availability are crucial not only for tree productivity, but also they clearly affect olive oil quality. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Mapping Urban Tree Canopy Cover Using Fused Airborne LIDAR and Satellite Imagery Data

Science.gov (United States)

Parmehr, Ebadat G.; Amati, Marco; Fraser, Clive S.

2016-06-01

Urban green spaces, particularly urban trees, play a key role in enhancing the liveability of cities. The availability of accurate and up-to-date maps of tree canopy cover is important for sustainable development of urban green spaces. LiDAR point clouds are widely used for the mapping of buildings and trees, and several LiDAR point cloud classification techniques have been proposed for automatic mapping. However, the effectiveness of point cloud classification techniques for automated tree extraction from LiDAR data can be impacted to the point of failure by the complexity of tree canopy shapes in urban areas. Multispectral imagery, which provides complementary information to LiDAR data, can improve point cloud classification quality. This paper proposes a reliable method for the extraction of tree canopy cover from fused LiDAR point cloud and multispectral satellite imagery data. The proposed method initially associates each LiDAR point with spectral information from the co-registered satellite imagery data. It calculates the normalised difference vegetation index (NDVI) value for each LiDAR point and corrects tree points which have been misclassified as buildings. Then, region growing of tree points, taking the NDVI value into account, is applied. Finally, the LiDAR points classified as tree points are utilised to generate a canopy cover map. The performance of the proposed tree canopy cover mapping method is experimentally evaluated on a data set of airborne LiDAR and WorldView 2 imagery covering a suburb in Melbourne, Australia.

Can we use photography to estimate radiation interception by a crop canopy?

Science.gov (United States)

Chakwizira, E; Meenken, E D; George, M J; Fletcher, A L

2015-03-01

Accuracy of determining radiation interception, and hence radiation use efficiency, depends on the method of measuring photosynthetically active radiation intercepted. Methods vary, from expensive instruments such as Sunfleck ceptometers to simple methods such as digital photography. However, before universal use of digital photography there is need to determine its reliability and compare it with conventional, but expensive, methods. In a series of experiments at Lincoln, New Zealand, canopy development for barley, wheat, white clover and four forage brassica species was determined using both digital photographs and Sunfleck ceptometer. Values obtained were used to calculate conversion coefficient (Kf/Ki) ratios between the two methods. Digital photographs were taken at 45° and 90° for barley, wheat and white clover and at only 90° for brassicas. There was an interaction of effects of crop and cultivar for the cereal crops. Barley closed canopies earlier than wheat, and 'Emir' barley and 'Stettler' wheat had consistently higher canopy cover than 'Golden Promise' and 'HY459', respectively. Canopy cover was consistently larger at 45° than 90° for cereals. However, for white clover, the angle of digital photography was not important. There was also an interaction between effects of species and method of determining canopy cover for brassicas. Photographs gave higher cover values than ceptometer for forage rape and turnip, but the relationship was variable for forage kale and swede. Kf/Ki ratios of 1.0-1.10 for cereals, white clover and forage rape and turnip show that digital photographs can be used to estimated radiation interception, in place of Sunfleck ceptometer, for these crops. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands.

Glasshouse seedling δ13C and canopy δ13C of 8-year-old hoop pine families grown in south-east Queensland in relation to canopy δ18O, nitrogen concentration and tree growth

International Nuclear Information System (INIS)

Prasolova, N.V.; Saffigna, P.G.; Farquhar, G.D.

1999-01-01

Full text: Carbon isotope composition (δ l3 C) in C 3 plants has been theoretically and empirically linked to plant water-use efficiency (WUE). The plant δ 13 C has been suggested as an early selection criterion in plant breeding. The δ 13 C and nitrogen concentration (N mass ) of branchlet tissue for inner and outer upper canopy positions were assessed for 8-year-old hoop pine (Araucaria cunninghamii Ait.ex D.Don) trees from 23 half-sib families grown in 5 blocks of a progeny test in south-east Queensland, and for glasshouse seedlings. Tree height was positively related to N mass in branchlets of the 2 canopy positions, indicating that tree growth was limited by nitrogen deficiency. Our data indicated that water supply was also a growth-limiting factor in the hoop pine plantation of the study-area. There were considerable variations in δ 13 C and N mass between families and blocks in the field (with a heritability estimate of 0.73 for branchlet δ 13 C from the inner canopy position). Significant variation in δ 13 C was observed between positions and families of the glasshouse seedlings (with a heritability estimate of 0.66). There was also a significant difference in N mass between the 2 sampling positions in the field. The δ 13 C was positively related to N mass for the branchlets of the upper outer crown (r=0.62, p 13 C (r: 0.28-0.41, p l3 C of the 2 canopy positions for all the 115 trees sampled. There was no significant correlation between δ 13 C values for 2 seedling canopy positions at age 18 months, possibly due to restricted rooting conditions in small pots, leading to greater stomatal closure in upper canopy, which was also reflected in more positive δ 13 C. Significant correlation existed between seedling δ 13 C of upper canopy position at age 8 months and low canopy position at age 18 months. This, together with field data, demonstrated the sensitivity and reliability of δ 13 C as an indicator of plant growth environment. Strong correlation

Sources of variability in canopy reflectance and the convergent properties of plants.

Science.gov (United States)

Ollinger, S V

2011-01-01

How plants interact with sunlight is central to the existence of life and provides a window to the functioning of ecosystems. Although the basic properties of leaf spectra have been known for decades, interpreting canopy-level spectra is more challenging because leaf-level effects are complicated by a host of stem- and canopy-level traits. Progress has been made through empirical analyses and models, although both methods have been hampered by a series of persistent challenges. Here, I review current understanding of plant spectral properties with respect to sources of uncertainty at leaf to canopy scales. I also discuss the role of evolutionary convergence in plant functioning and the difficulty of identifying individual properties among a suite of interrelated traits. A pattern that emerges suggests a synergy among the scattering effects of leaf-, stem- and canopy-level traits that becomes most apparent in the near-infrared (NIR) region. This explains the widespread and well-known importance of the NIR region in vegetation remote sensing, but presents an interesting paradox that has yet to be fully explored: that we can often gain more insight about the functioning of plants by examining wavelengths that are not used in photosynthesis than by examining those that are. © 2010 The Author. New Phytologist © 2010 New Phytologist Trust.

Radiation interception and use, and spectral reflectance of contrasting canopies of autumn sown faba beans and semi-leafless peas

International Nuclear Information System (INIS)

Ridao, E.; Oliveira, C.F.; Conde, J.R.; Minguez, M.I.

1996-01-01

Water deficits in faba bean produced a change in leaf angle that lowered the fraction of photosynthetically active radiation intercepted (R pi ) by the canopy, when compared to irrigated faba beans. This response was not found in a semi-leafless pea crop for its canopy structure was maintained rigid by tendrils. These contrasting behaviours were quantified by changes in photosynthetically active radiation (R p ) extinction coefficients (K). For irrigated faba beans, an average value for K of 0.78 is proposed for R p interception modelling. In the case of water stressed faba beans, the possibility of using a water stress dependent K is raised. The canopy architecture of semi-leafless peas may allow the use of one K (0.50) for the two water regimes. Radiation use efficiency (RUE) showed a two phase behaviour: before (RUEbg) and after (RUEag) the beginning of grain filling. In addition, changes in RUE were also due to water supply and affected RUEag values, although in a different way in peas than in faba beans. The reflectance properties of these canopies allowed for an evaluation of crop biomass and also enhanced their contrasting characteristics. The Soil Adjusted Vegetation Index (SAVI2) was used here as a means to estimate R pi . The relationships between SAVI2 and R pi were near-linear in faba beans and linear in peas. Crop biomass was then estimated with these relationships and with the acquired information on the two phase RUE of each species and water regime. (author)

Surface and canopy fuels vary widely in 24-yr old postfire lodgepole pine forests

Science.gov (United States)

Nelson, K. N.; Turner, M.; Romme, W. H.; Tinker, D. B.

2013-12-01

positively related to tree density. In contrast, the mass of coarse fuels (100-hr and 1000-hr fuels) was most related to pre-fire stand structure and site productivity. Crown base height averaged 0.42 m ranging from 0.02 to 1.17 m and was positively related to tree density due to density dependent self-pruning. Our data indicate that that much of the forest that regenerated after the 1988 fire already has adequate fuel to carry fire, and given suitable fire weather, fuel loads in many stands are sufficient to support active crown fire. Should fire occur in these young forests, substantial heterogeneity in canopy, surface and total fuels suggest variability in fire behavior and severity. Fuel mosaics in young forests will increasingly influence fire activity in western forests as climate continues to warm and fire rotations decline.

Canopy storage capacity and wettability of leaves and needles: The effect of water temperature changes

Science.gov (United States)

Klamerus-Iwan, Anna; Błońska, Ewa

2018-04-01

The canopy storage capacity (S) is a major component of the surface water balance. We analysed the relationship between the tree canopy water storage capacity and leaf wettability under changing simulated rainfall temperature. We estimated the effect of the rain temperature change on the canopy storage capacity and contact angle of leave and needle surfaces based on two scenarios. Six dominant forest trees were analysed: English oak (Quercus roburL.), common beech (Fagus sylvatica L.), small-leaved lime (Tilia cordata Mill), silver fir (Abies alba), Scots pine (Pinus sylvestris L.),and Norway spruce (Picea abies L.). Twigs of these species were collected from Krynica Zdrój, that is, the Experimental Forestry unit of the University of Agriculture in Cracow (southern Poland). Experimental analyses (simulations of precipitation) were performed in a laboratory under controlled conditions. The canopy storage capacity and leaf wettability classification were determined at 12 water temperatures and a practical calculator to compute changes of S and contact angles of droplets was developed. Among all species, an increase of the rainfall temperature by 0.7 °C decreases the contact angle between leave and needle surfaces by 2.41° and increases the canopy storage capacity by 0.74 g g-1; an increase of the rain temperature by 2.7 °C decreases the contact angle by 9.29° and increases the canopy storage capacity by 2.85 g g-1. A decreased contact angle between a water droplet and leaf surface indicates increased wettability. Thus, our results show that an increased temperature increases the leaf wettability in all examined species. The comparison of different species implies that the water temperature has the strongest effect on spruce and the weakest effect on oak. These data indicate that the rainfall temperature influences the canopy storage capacity.

Tree canopy types constrain plant distributions in ponderosa pine-Gambel oak forests, northern Arizona

Science.gov (United States)

Scott R. Abella

2009-01-01

Trees in many forests affect the soils and plants below their canopies. In current high-density southwestern ponderosa pine (Pinus ponderosa) forests, managers have opportunities to enhance multiple ecosystem values by manipulating tree density, distribution, and canopy cover through tree thinning. I performed a study in northern Arizona ponderosa...

Plant Type and Its Effects on Canopy Structure at Heading Stage in Various Ecological Areas for a Two-line Hybrid Rice Combination, Liangyoupeijiu

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Chuan-gen LU

2010-09-01

Full Text Available A two-line hybrid rice combination, Liangyoupeijiu, was used to estimate several factors of plant type, and environmental models for these factors at the heading stage were established using the data of eight ecological experimental sites in 2006 and 2007. According to climatic data from 1951 to 2005, the differences in those factors and their effects on plant canopy were analyzed for four rice cropping areas in China, including South China, the middle-lower reaches of the Yangtze River, Sichuan Basin, and river valley in Yunnan, China. The thickness of leaf layer (the distance from pulvinus of the third leaf from the top to the tip of flag leaf and distribution of leaf area could be used as candidate indices for the plant type of a rice canopy.

Strengthening the Ubuntu social canopy after the Afrophobic attacks

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Zorodzai Dube

2016-03-01

Full Text Available In view of the aftermath of the Afrophobic attacks in South Africa, this study regards Paul�s emphasis concerning common humanity and morality as a possible lacuna towards strengthening Ubuntu. Paul taught that both the Jews and the Gentiles have their common ancestor � Adam, and that good morality is a better identity marker than ethnicity. In view of the aftermath of the Afrophobic attacks in South Africa, this study suggests that similar arguments can be used to amend the Ubuntu social canopy.Intradisciplinary and/or interdisciplinary implications: This study is interdisciplinary in nature in that it uses perspectives from social sciences to seek solutions towards a more inclusive communityKeywords: Afrophobia; Xenophobia; Ubuntu; Social Canopy; Christ-like Anthropology

Using foreground/background analysis to determine leaf and canopy chemistry

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Pinzon, J. E.; Ustin, S. L.; Hart, Q. J.; Jacquemoud, S.; Smith, M. O.

1995-01-01

Spectral Mixture Analysis (SMA) has become a well established procedure for analyzing imaging spectrometry data, however, the technique is relatively insensitive to minor sources of spectral variation (e.g., discriminating stressed from unstressed vegetation and variations in canopy chemistry). Other statistical approaches have been tried e.g., stepwise multiple linear regression analysis to predict canopy chemistry. Grossman et al. reported that SMLR is sensitive to measurement error and that the prediction of minor chemical components are not independent of patterns observed in more dominant spectral components like water. Further, they observed that the relationships were strongly dependent on the mode of expressing reflectance (R, -log R) and whether chemistry was expressed on a weight (g/g) or are basis (g/sq m). Thus, alternative multivariate techniques need to be examined. Smith et al. reported a revised SMA that they termed Foreground/Background Analysis (FBA) that permits directing the analysis along any axis of variance by identifying vectors through the n-dimensional spectral volume orthonormal to each other. Here, we report an application of the FBA technique for the detection of canopy chemistry using a modified form of the analysis.

[Estimation of vegetation canopy water content using Hyperion hyperspectral data].

Science.gov (United States)

Song, Xiao-Ning; Ma, Jian-Wei; Li, Xiao-Tao; Leng, Pei; Zhou, Fang-Cheng; Li, Shuang

2013-10-01

Vegetation canopy water content (VCWC) has widespread utility in agriculture, ecology and hydrology. Based on the PROSAIL model, a novel model for quantitative inversion of vegetation canopy water content using Hyperion hyperspectral data was explored. Firstly, characteristics of vegetation canopy reflection were investigated with the PROSAIL radiative transfer model, and it was showed that the first derivative at the right slope (980 - 1 070 nm) of the 970 nm water absorption feature (D98-1 070) was closely related to VCWC, and determination coefficient reached to 0.96. Then, bands 983, 993, 1 003, 1 013, 1 023, 1 033, 1 043, 1 053 and 1 063 nm of Hyperion data were selected to calculate D980-1 070, and VCWC was estimated using the proposed method. Finally, the retrieval result was verified using field measured data in Yingke oasis of the Heihe basin. It indicated that the mean relative error was 12.5%, RMSE was within 0.1 kg x m(-2) and the proposed model was practical and reliable. This study provides a more efficient way for obtaining VCWC of large area.

Canopy position affects the relationships between leaf respiration and associated traits in a tropical rainforest in Far North Queensland.

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Weerasinghe, Lasantha K; Creek, Danielle; Crous, Kristine Y; Xiang, Shuang; Liddell, Michael J; Turnbull, Matthew H; Atkin, Owen K

2014-06-01

We explored the impact of canopy position on leaf respiration (R) and associated traits in tree and shrub species growing in a lowland tropical rainforest in Far North Queensland, Australia. The range of traits quantified included: leaf R in darkness (RD) and in the light (RL; estimated using the Kok method); the temperature (T)-sensitivity of RD; light-saturated photosynthesis (Asat); leaf dry mass per unit area (LMA); and concentrations of leaf nitrogen (N), phosphorus (P), soluble sugars and starch. We found that LMA, and area-based N, P, sugars and starch concentrations were all higher in sun-exposed/upper canopy leaves, compared with their shaded/lower canopy and deep-shade/understory counterparts; similarly, area-based rates of RD, RL and Asat (at 28 °C) were all higher in the upper canopy leaves, indicating higher metabolic capacity in the upper canopy. The extent to which light inhibited R did not differ significantly between upper and lower canopy leaves, with the overall average inhibition being 32% across both canopy levels. Log-log RD-Asat relationships differed between upper and lower canopy leaves, with upper canopy leaves exhibiting higher rates of RD for a given Asat (both on an area and mass basis), as well as higher mass-based rates of RD for a given [N] and [P]. Over the 25-45 °C range, the T-sensitivity of RD was similar in upper and lower canopy leaves, with both canopy positions exhibiting Q10 values near 2.0 (i.e., doubling for every 10 °C rise in T) and Tmax values near 60 °C (i.e., T where RD reached maximal values). Thus, while rates of RD at 28 °C decreased with increasing depth in the canopy, the T-dependence of RD remained constant; these findings have important implications for vegetation-climate models that seek to predict carbon fluxes between tropical lowland rainforests and the atmosphere. © The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.