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Sample records for supergenera genera species

  1. Comparison between two genera, species and cultivars in Lactuceae, (3)

    International Nuclear Information System (INIS)

    Haque, M.Z.; Godward, M.B.E.

    1986-01-01

    Estimation of DNA amounts (in arbitrary units) in two genera, two species, and three cultivars of one species, permits comparison between them and indicates that the biggest difference is between the two genera, Lactuca and Cichorium; but that the difference between the cultivars of Lactuca sativa is greater than the difference between Lactuca serriola and the mean for Lactuca sativa. Lactuca serriola is a presumed ancestor of Lactuca sativa. The most radiosensitive species, L. serriola, has slightly less DNA and smaller nuclear volume than the next most sensitive, L. sativa cult. Cos. This is discussed. (author)

  2. The Doryctinae (Braconidae) of Costa Rica: genera and species of the tribe Heterospilini

    OpenAIRE

    Marsh, Paul; Wild, Alexander; Whitfield, James

    2013-01-01

    Abstract A comprehensive taxonomic study is presented for the four genera and 286 species of the doryctine tribe Heterospilini occurring in Costa Rica. The tribe is represented almost entirely by the 280 species of the genus Heterospilus Haliday. Keys for identification of the genera and species are provided and the genera and species are described and illustrated. An interactive key to the species of Heterospilus also was prepared using Lucid Builder. The following new genus and species are ...

  3. Some notes on species of the genera Bachia and Scolecosaurus

    NARCIS (Netherlands)

    Brongersma, L.D.

    1946-01-01

    Our herpetological collections contain only five specimens referable to the genera Bachia and Scolecosaurus, while the genus Bachia is represented in the Amsterdam Zoological Museum by eight specimens. Scanty though this material may be, some of the specimens proved to be of sufficient interest to

  4. New genera and species of leaf beetles (Coleoptera: Chrysomelidae) from China and South Korea

    Science.gov (United States)

    Two new genera from China (Taumaceroides Lopatin and Yunnaniata Lopatin) and 11 new species (Smaragdina quadrimaculata Lopatin, Smaragdina oblongum Lopatin, Hyphaenia volkovitshi Lopatin, Arthrotus daliensis Lopatin, Taumaceroides sinicus Lopatin, Yunnaniata konstantinovi Lopatin, Calomicrus yunnanu...

  5. Review of the New World Tigava lace bug complex (Hemiptera: Heteroptera: Tingidae), with the description of two new genera and two new species and a key to genera

    Science.gov (United States)

    The lace bug (Tingidae) genera belonging to the New World Tigava complex are reviewed. The two new genera and new species Mexicotingis brailovskyi, from Mexico, and Paraceratotingis convergens, from Venezuela, are described. Diagnoses, descriptions, and digital color photographs of the new taxa, d...

  6. Cross-species amplification of microsatellites in genera ...

    Indian Academy of Sciences (India)

    species in Chinese freshwater polyculture system. Accord- ing to several recent ... cephala transcriptome database were chosen to test their utility for ..... 2012BAD26B00) and Fundamental Research Funds for the Central. Universities (no.

  7. Comparison between two genera, species and cultivars in Lactuceae, 4

    International Nuclear Information System (INIS)

    Haque, M.Z.; Godward, M.B.E.

    1986-01-01

    The germination time under standard conditions was determined in control material of three cultivars of Lactuca sativa and L. serriola, and also the time of first nuclear division from dormancy, together with mitotic index at stated times from onset of mitosis. The effect of seed irradiation on the mitotic index and on the production of anaphase bridges at the same dose in the different cultivars or species was investigated. Results are presented as histograms and/or tables. The order of sensitivity to radiation of two of the cultivars of L. sativa and L. serriola, determined by growth inhibition studies, not presented, was as follows: Tom Thumb (L. sativa) < Cos (L. sativa) < L. serriola. More aberrations were produced at the same dose in the sensitive species. The results are discussed. (author)

  8. Comparison between two genera, species and cultivars in lactuceae, 2

    International Nuclear Information System (INIS)

    Haque, M.Z.; Godward, M.B.E.

    1985-01-01

    Seeds of Lactuca sativa (cultivars Lobjoits Green Cos, Tom Thumb) and Lactuca serriola collected from the field, were irradiated with 10 and 30 Kr of gamma radiation. These and control seeds were grown on, and the chiasma frequencies determined in the M 1 plants. Chromosome types had been identified (Haque and Godward, Paper I) so that it was possible to determine chiasma frequency for each chromosome type. The relationship between chromosome length and chaisma frequency, dose and chiasma frequency, per bivalent and per nucleus, for each cultivar or species, was examined. There was reduction with dose of chiasma frequency in L. serriola, but increase with dose in the two clutivars of L. sativa. The results are discussed in relation to genic control of chiasma frequency, and genic control of sensitivity to radiation. Chiasma frequency was not determined in C. intybus. (author)

  9. New genera and species of the tribe Taphurini (Hemiptera, Cicadidae) from Sundaland

    NARCIS (Netherlands)

    Duffels, J.P.

    2011-01-01

    Three new genera and five species of Taphurini from Sundaland (Malayan Peninsula, Sumatra, Borneo and Java) are described: Sundabroma including S. bimaculata sp. n. from Borneo and S. suffusca sp. n. from the Malayan Peninsula, Allobroma including A. kedenburgi (Breddin, 1905) comb. n. from Borneo

  10. Two new genera and three new species of Epipaschiinae Meyrick from China (Lepidoptera, Pyralidae

    Directory of Open Access Journals (Sweden)

    Mingqiang Wang

    2017-12-01

    Full Text Available Two new genera of Epipaschiinae are described. The genus Arcanusa Wang, Chen & Wu, gen. n. is established for Ar. apexiarcanusa Wang, Chen & Wu, sp. n. and Ar. sinuosa (Moore, 1888, comb. n., described in Scopocera Moore, 1888 (junior synonym of Stericta Lederer, 1863. The female genitalia of Ar. sinuosa (Moore, 1888, comb. n. are described for the first time. Androconia Wang, Chen & Wu, gen. n. is erected, including two new species, An. rallusa Wang, Chen & Wu, sp. n. and An. morulusa Wang, Chen & Wu, sp. n. Illustrations of all adults and their genitalia, and a key to the two new genera are provided.

  11. The Genera of Fungi: fixing the application of type species of generic names.

    Science.gov (United States)

    Crous, Pedro W; Giraldo, Alejandra; Hawksworth, David L; Robert, Vincent; Kirk, Paul M; Guarro, Josep; Robbertse, Barbara; Schoch, Conrad L; Damm, Ulrike; Trakunyingcharoen, Thippawan; Groenewald, Johannes Z

    2014-06-01

    To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org (GoF) was established, which will allow deposition of metadata linked to holo-, lecto-, neo- or epitype specimens, cultures and DNA sequence data of the type species of genera. Although there are presently more than 18 000 fungal genera described, we aim to initially focus on the subset of names that have been placed on the "Without-prejudice List of Protected Generic Names of Fungi" (see IMA Fungus 4(2): 381-443, 2013). To enable the global mycological community to keep track of typification events and avoid duplication, special MycoBank Typification identfiers (MBT) will be issued upon deposit of metadata in MycoBank. MycoBank is linked to GoF, thus deposited metadata of generic type species will be displayed in GoF (and vice versa), but will also be linked to Index Fungorum (IF) and the curated RefSeq Targeted Loci (RTL) database in GenBank at the National Center for Biotechnology Information (NCBI). This initial paper focuses on eight genera of appendaged coelomycetes, the type species of which are neo- or epitypified here: Bartalinia (Bartalinia robillardoides; Amphisphaeriaceae, Xylariales), Chaetospermum (Chaetospermum chaetosporum, incertae sedis, Sebacinales), Coniella (Coniella fragariae, Schizoparmaceae, Diaporthales), Crinitospora (Crinitospora pulchra, Melanconidaceae, Diaporthales), Eleutheromyces (Eleutheromyces subulatus, Helotiales), Kellermania (Kellermania yuccigena, Planistromataceae, Botryosphaeriales), Mastigosporium (Mastigosporium album, Helotiales), and Mycotribulus (Mycotribulus mirabilis, Agaricales). Authors interested in contributing accounts of individual genera to larger multi-authored papers to be published in IMA Fungus, should contact the

  12. Phylogenetic relationships among Lactuca (Asteraceae) species and related genera based on ITS-1 DNA sequences.

    Science.gov (United States)

    Koopman, W J; Guetta, E; van de Wiel, C C; Vosman, B; van den Berg, R G

    1998-11-01

    Internal transcribed spacer (ITS-1) sequences from 97 accessions representing 23 species of Lactuca and related genera were determined and used to evaluate species relationships of Lactuca sensu lato (s.l.). The ITS-1 phylogenies, calculated using PAUP and PHYLIP, correspond better to the classification of Feráková than to other classifications evaluated, although the inclusion of sect. Lactuca subsect. Cyanicae is not supported. Therefore, exclusion of subsect. Cyanicae from Lactuca sensu Feráková is proposed. The amended genus contains the entire gene pool (sensu Harlan and De Wet) of cultivated lettuce (Lactuca sativa). The position of the species in the amended classification corresponds to their position in the lettuce gene pool. In the ITS-1 phylogenies, a clade with L. sativa, L. serriola, L. dregeana, L. altaica, and L. aculeata represents the primary gene pool. L. virosa and L. saligna, branching off closest to this clade, encompass the secondary gene pool. L. virosa is possibly of hybrid origin. The primary and secondary gene pool species are classified in sect. Lactuca subsect. Lactuca. The species L. quercina, L. viminea, L. sibirica, and L. tatarica, branching off next, represent the tertiary gene pool. They are classified in Lactuca sect. Lactucopsis, sect. Phaenixopus, and sect. Mulgedium, respectively. L. perennis and L. tenerrima, classified in sect. Lactuca subsect. Cyanicae, form clades with species from related genera and are not part of the lettuce gene pool.

  13. Environmental niche conservatism explains the accumulation of species richness in Mediterranean-hotspot plant genera.

    Science.gov (United States)

    Skeels, Alexander; Cardillo, Marcel

    2017-03-01

    The causes of exceptionally high plant diversity in Mediterranean-climate biodiversity hotspots are not fully understood. We asked whether a mechanism similar to the tropical niche conservatism hypothesis could explain the diversity of four large genera (Protea, Moraea, Banksia, and Hakea) with distributions within and adjacent to the Greater Cape Floristic Region (South Africa) or the Southwest Floristic Region (Australia). Using phylogenetic and spatial data we estimated the environmental niche of each species, and reconstructed the mode and dynamics of niche evolution, and the geographic history, of each genus. For three genera, there were strong positive relationships between the diversity of clades within a region and their inferred length of occupation of that region. Within genera, there was evidence for strong evolutionary constraint on niche axes associated with climatic seasonality and aridity, with different niche optima for hotspot and nonhotspot clades. Evolutionary transitions away from hotspots were associated with increases in niche breadth and elevated rates of niche evolution. Our results point to a process of "hotspot niche conservatism" whereby the accumulation of plant diversity in Mediterranean-type ecosystems results from longer time for speciation, with dispersal away from hotspots limited by narrow and phylogenetically conserved environmental niches. © 2017 The Author(s). Evolution © 2017 The Society for the Study of Evolution.

  14. Description of new genera and species of marine cyanobacteria from the Portuguese Atlantic coast.

    Science.gov (United States)

    Brito, Ângela; Ramos, Vitor; Mota, Rita; Lima, Steeve; Santos, Arlete; Vieira, Jorge; Vieira, Cristina P; Kaštovský, Jan; Vasconcelos, Vitor M; Tamagnini, Paula

    2017-06-01

    Aiming at increasing the knowledge on marine cyanobacteria from temperate regions, we previously isolated and characterized 60 strains from the Portuguese foreshore and evaluate their potential to produce secondary metabolites. About 15% of the obtained 16S rRNA gene sequences showed less than 97% similarity to sequences in the databases revealing novel biodiversity. Herein, seven of these strains were extensively characterized and their classification was re-evaluated. The present study led to the proposal of five new taxa, three genera (Geminobacterium, Lusitaniella, and Calenema) and two species (Hyella patelloides and Jaaginema litorale). Geminobacterium atlanticum LEGE 07459 is a chroococcalean that shares morphological characteristics with other unicellular cyanobacterial genera but has a distinct phylogenetic position and particular ultrastructural features. The description of the Pleurocapsales Hyella patelloides LEGE 07179 includes novel molecular data for members of this genus. The filamentous isolates of Lusitaniella coriacea - LEGE 07167, 07157 and 06111 - constitute a very distinct lineage, and seem to be ubiquitous on the Portuguese coast. Jaaginema litorale LEGE 07176 has distinct characteristics compared to their marine counterparts, and our analysis indicates that this genus is polyphyletic. The Synechococcales Calenema singularis possess wider trichomes than Leptolyngbya, and its phylogenetic position reinforces the establishment of this new genus. Copyright © 2017 Elsevier Inc. All rights reserved.

  15. Neotropical genera of Naucoridae (Hemiptera: Heteroptera: Nepomorpha): new species of Placomerus and Procryphocricos from Guyana and Venezuela.

    Science.gov (United States)

    Sites, Robert W; Camacho, Jesús

    2014-01-09

    The Neotropical fauna of saucer bugs (Naucoridae) currently includes four monotypic genera. Recent extensive collecting in Venezuela has produced three new species in two of these genera. In addition, undetermined Guyanan specimens of one of the new species were found in the United States National Museum of Natural History. Thus, described here are Placomerus obscuratus n. sp. from Guyana and Venezuela with brachypterous and macropterous hindwing forms, and two species of Procryphocricos from Venezuela. Procryphocricos quiu n. sp. is described from the brachypterous forewing form and Procryphocricos macoita n. sp. from both brachypterous and macropterous forms. Previously described species also are discussed.

  16. New genera and species of gall midges (Diptera, Cecidomyiidae from three restingas of Rio de Janeiro State, Brazil

    Directory of Open Access Journals (Sweden)

    Valéria Cid Maia

    2001-07-01

    Full Text Available Five new genera and fourteen new species of gall midges from restingas of Rio de Janeiro State are described. The larva, pupa, male, female and gall are described for each species. The new genera are: Arrabidaeamyia, Epihormomyia, Manilkaramyia, Mayteniella and Parazalepidota. The new species are: Arrabidaeamyia serrata, Asphondylia peploniae, Clinodiplosis diodiae, Clinodiplosis profusa, Clusiamyia granulosa, Dasineura couepiae, Epihormomyia miconiae, Lopesia grandis, Lopesia marginalis, Lopesia singularis, Manilkaramyia notabilis, Mayteniella distincta, Parazalepidota clusiae and Paulliniamyia ampla. Also, the larva of a previously described species, Clusiamyia nitida Maia, 1996 is described and Asphondylia byrsonimae Maia & Couri is transferred to Bruggmaniella.

  17. Revisions of the Afrotropical genera of Argidae and species of Pampsilota Konow, 1899 (Hymenoptera, Tenthredinoidea

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    Andrew D. Liston

    2017-01-01

    Full Text Available The Afrotropical fauna contains five genera of Argidae. These are keyed. New subjective synonyms, followed by the valid name in brackets, are Calarge Enslin, 1911 [Arge Schrank, 1802], Calarge africana Enslin, 1911 [Arge congrua Konow, 1907], Clyparge Pasteels, 1963 [Scobina Lepeletier & Serville, 1828], Clyparge terminalis Pasteels, 1963 [Scobina poecila (Klug, 1834], and Sterictophora [sic] afra Pasteels, 1963 [Sphacophilus afer comb. n., species inquirenda near S. monjarasi Smith & Morales-Reyes, 2015]. The type material of both C. terminalis and S. afra was probably collected in the New World, but labelled with the wrong locality “Kamerun”. An introduction of both species to Africa, not followed by long-term establishment, seems less likely. The removal of these taxa from the faunal list of the region is recommended. The nine known Afrotropical species of Pampsilota are revised, and an illustrated dichotomous identification key presented, with distribution maps for all species. Four species are here described as new to science: P. dahomeyanus Goergen, Koch & Liston, sp. n., P. nigeriae Liston & Koch, sp. n., P. tsavoensis Liston & Koch, sp. n., and P. zebra Liston & Koch, sp. n. Lectotypes are designated for Pampsilota afer Konow, 1899, and Cipdele africana Mocsáry, 1909. The immature stages and host plant of only one species are known: P. dahomeyanus on Lannea nigritana (Anacardiaceae. Its larval morphology strongly resembles that of European and North American species of Arge. We provisionally retain Pampsilota as a valid genus, although it could justifiably be treated as comprising merely a species group, or groups, within Arge.

  18. Testing deep-sea biodiversity paradigms on abyssal nematode genera and Acantholaimus species

    Science.gov (United States)

    Lins, Lidia; da Silva, Maria Cristina; Neres, Patrícia; Esteves, André Morgado; Vanreusel, Ann

    2018-02-01

    Biodiversity patterns in the deep sea have been extensively studied in the last decades. In this study, we investigated whether reputable concepts in deep-sea ecology also explain diversity and distribution patterns of nematode genera and species in the abyss. Among them, three paradigms were tackled: (1) the deep sea is a highly diverse environment at a local scale, while on a regional and even larger geographical scale, species and genus turnover is limited; (2) the biodiversity of deep-sea nematode communities changes with the nature and amount of organic matter input from the surface; and (3) patch-mosaic dynamics of the deep-sea environment drive local diversity. To test these hypotheses, diversity and density of nematode assemblages and of species of the genus Acantholaimus were studied along two abyssal E-W transects. These two transects were situated in the Southern Ocean ( 50°S) and the North Atlantic ( 10°N). Four different hierarchical scales were used to compare biodiversity: at the scale of cores, between stations from the same region, and between regions. Results revealed that the deep sea harbours a high diversity at a local scale (alpha diversity), but that turnover can be shaped by different environmental drivers. Therefore, these results question the second part of the paradigm about limited species turnover in the deep sea. Higher surface primary productivity was correlated with greater nematode densities, whereas diversity responses to the augmentation of surface productivity showed no trend. Areas subjected to a constant and low food input revealed similar nematode communities to other oligotrophic abyssal areas, while stations under high productivity were characterized by different dominant genera and Acantholaimus species, and by a generally low local diversity. Our results corroborate the species-energy hypothesis, where productivity can set a limit to the richness of an ecosystem. Finally, we observed no correlation between sediment

  19. Molecular phylogeny of Glossodoris (Ehrenberg, 1831) nudibranchs and related genera reveals cryptic and pseudocryptic species complexes

    KAUST Repository

    Matsuda, Shayle B.; Gosliner, Terrence M.

    2017-01-01

    Chromodorid nudibranchs (Chromodorididae) are brightly coloured sea slugs that live in some of the most biodiverse and threatened coral reefs on the planet. However, the evolutionary relationships within this family have not been well understood, especially in the genus Glossodoris. Members of Glossodoris have experienced large-scale taxonomic instability over the last century and have been the subject of repeated taxonomic changes, in part due to morphological characters being the sole traditional taxonomic sources of data. Changing concepts of traditional generic boundaries based on morphology also have contributed to this instability. Despite recent advances in molecular systematics, many aspects of chromodorid taxonomy remain poorly understood, particularly at the traditional species and generic levels. In this study, 77 individuals comprising 32 previously defined species were used to build the most robust phylogenetic tree of Glossodoris and related genera using mitochondrial genes cytochrome c oxidase subunit I and 16S, and the nuclear gene 28S. Bayesian inference, maximum likelihood, and maximum parsimony analyses verify the most recent hypothesized evolutionary relationships within Glossodoris. Additionally, a pseudocryptic and cryptic species complex within Glossodoris cincta and a pseudocryptic complex within Glossodoris pallida emerged, and three new species of Doriprismatica are identified.

  20. Molecular phylogeny of Glossodoris (Ehrenberg, 1831) nudibranchs and related genera reveals cryptic and pseudocryptic species complexes

    KAUST Repository

    Matsuda, Shayle B.

    2017-03-01

    Chromodorid nudibranchs (Chromodorididae) are brightly coloured sea slugs that live in some of the most biodiverse and threatened coral reefs on the planet. However, the evolutionary relationships within this family have not been well understood, especially in the genus Glossodoris. Members of Glossodoris have experienced large-scale taxonomic instability over the last century and have been the subject of repeated taxonomic changes, in part due to morphological characters being the sole traditional taxonomic sources of data. Changing concepts of traditional generic boundaries based on morphology also have contributed to this instability. Despite recent advances in molecular systematics, many aspects of chromodorid taxonomy remain poorly understood, particularly at the traditional species and generic levels. In this study, 77 individuals comprising 32 previously defined species were used to build the most robust phylogenetic tree of Glossodoris and related genera using mitochondrial genes cytochrome c oxidase subunit I and 16S, and the nuclear gene 28S. Bayesian inference, maximum likelihood, and maximum parsimony analyses verify the most recent hypothesized evolutionary relationships within Glossodoris. Additionally, a pseudocryptic and cryptic species complex within Glossodoris cincta and a pseudocryptic complex within Glossodoris pallida emerged, and three new species of Doriprismatica are identified.

  1. Lectotypification of three Iberian endemic species belonging to monotypic genera described by Cosson

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    Buira, Antoni

    2015-12-01

    Full Text Available Three lectotypes are here designated for Euzomodendron bourgaeanum Coss., Guiraoa arvensis Coss. and Laserpitium scabrum Cav. (Guillonea scabra (Cav. Coss., whose genera are monospecific and endemic to the Iberian Peninsula. The selected types of the two former species are kept at P and belong to Cosson’s personal herbarium, whilst the last one is kept at MA and belongs to the historical herbarium of Cavanilles.Se designan los lectótipos de Euzomodendron bourgaeanum Coss., Guiraoa arvensis Coss. y Laserpitium scabrum Cav. (Guillonea scabra (Cav. Coss., cuyos géneros son monoespecíficos y endémicos de la Península Ibérica. Los tipos seleccionados para las dos primeras especies se encuentran en P y pertenecen al herbario personal de Cosson, mientras que el de la última se encuentra en MA y pertenece al herbario histórico de Cavanilles.

  2. Bolivian Rhinotragini VIII: new genera and species related to Pseudophygopoda Tavakilian & Peñaherrera-Leiva, 2007 (Coleoptera, Cerambycidae

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    Robin O.S. Clarke

    2014-01-01

    Full Text Available Pseudophygopoda Tavakilian & Peñaherrera-Leiva, 2007 is redescribed. Four new, closely related genera are described. Panamapoda gen. nov., with P. panamensis (Giesbert, 1996; Paraphygopoda gen nov., with Paraphygopoda nappae sp. nov., P. albitarsis (Klug, 1825, P. viridimicans (Fisher, 1952, and, provisionally, P. longipennis (Zajciw, 1963; Para melitta gen. nov., with Paramelitta wappesi sp. nov., and P. aglaia (Newman, 1840; and Phygomelitta gen. nov., with one species, P. triangularis (Fuchs, 1961. All the species are illustrated (including genitalia; and keys to the genera, and their species, are provided.

  3. Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species

    KAUST Repository

    Arrigoni, Roberto

    2016-09-09

    Scleractinian corals are affected by environment-induced phenotypic plasticity and intraspecific morphological variation caused by genotype. In an effort to identify new strategies for resolving this taxonomic issue, we applied a molecular approach for species evaluation to two closely related genera, Echinophyllia and Oxypora, for which few molecular data are available. A robust multi-locus phylogeny using DNA sequence data across four loci of both mitochondrial (COI, ATP6-NAD4) and nuclear (histone H3, ITS region) origin from 109 coral colonies was coupled with three independent putative species delimitation methods based on barcoding threshold (ABGD) and coalescence theory (PTP, GMYC). Observed overall congruence across multiple genetic analyses distinguished two traditional species (E. echinoporoides and O. convoluta), a species complex composed of E. aspera, E. orpheensis, E. tarae, and O. glabra, whereas O. lacera and E. echinata were indistinguishable with the sequenced loci. The combination of molecular species delimitation approaches and skeletal character observations allowed the description of two new reef coral species, E. bulbosa sp. n. from the Red Sea and E. gallii sp. n. from the Maldives and Mayotte. This work demonstrated the efficiency of multi-locus phylogenetic analyses and recently developed molecular species delimitation approaches as valuable tools to disentangle taxonomic issues caused by morphological ambiguities and to re-assess the diversity of scleractinian corals. (C) 2016 Elsevier Inc. All rights reserved.

  4. The tribe Acutalini Fowler (Homoptera, Membracidae, Smiliinae: new genera, new species and some nomenclatural changes

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    Albino M Sakakibara

    1997-09-01

    Full Text Available The tribe Acutalini Fowler is redescribed as well as the genera Acutalis Fairmaire, Euritea Stål, and Thrasymedes Kirkaldy. The following new taxa and nomenclatural changes are presented: Thrasymedes mexicana sp.n. (from Mexico, Oaxaca; Bordonia gen.n., with B. venezuelana sp.n. (type-species (from Venezuela, Portachuelo, B. clypeata sp.n. (from Colombia, Cuesta Boba, B. majuscula sp.n. (from Venezuela, Portachuelo, and Cornutalis gen.n., with C. cauca sp.n. (type-species (from Colombia, Cauca, and C. validu sp.n. (from Ecuador, Sto. Domingo. Acutalis fusconervosa Fairmaire, 1846 = Horiola venosa Walker, 1858, syn.n.; Euritea munda (Walker, 1858 = Stictolobus nitidus Funkhouser, 1940, syn.n.; Bordonia nigricosta (Goding, 1926, comb.n.; Bordonia virescens (Funkhouser, 1940, comb.n.. One species is transferred to Smiliinae-Ceresini: Tapinolobus curvispina (Walker, 1858, comb.n. (formerly in Thrasymedes = Tapinolobus fasciatus Sakakibara, 1969, syn.n.; another one is transferred to Darninae-Cymbomorphini: Eumela darnioides (Walker, 1858, comb.n. (formerly in Euritea.

  5. Western Hemisphere Zuphiini: descriptions of Coarazuphium whiteheadi, new species, and Zuphioides, new genus, and classification of the genera (Coleoptera, Carabidae

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    George Ball

    2013-07-01

    Full Text Available Based on small samples (exemplars analyzed with morphological methods, including detailed descriptions and illustrations, this study treats primarily the Zuphium genus-group in the Western Hemisphere, which comprises two precinctive genera: Coarazuphium Gnaspini, Vanin & Godoy, 1998 (type species Parazuphium tessai Godoy & Vanin, 1990 and Zuphioides gen. n. (type species Zuphium mexicanum Chaudoir, 1863. The genus Coarazuphium includes six troglobitic species from Brazilian caves, and one probably hypogaeic (troglophilic species from the mountains of Oaxaca, in Mexico (C. whiteheadi, sp. n., type locality, ridge top, in western Oaxaca, Mexico, at 2164 m, 35 km north of San Pedro Juchatengo, 16.462N, 97.010W. The epigaeic genus Zuphioides includes 23 species, with its geographical range extended from Neotropical temperate Argentina in southern South America, northward through the tropics to north temperate southeastern Canada, in the Nearctic Region. Keys are provided to the species of Coarazuphium and to the genera of Western Hemisphere Zuphiini.

  6. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity

    OpenAIRE

    Alström, Per; Barnes, Keith N.; Barker, F. Keith; Olsson, Urban; Bloomer, Paulette; Khan, Aleem Ahmed; Qureshi, Masood Ahmed; Guillaumet, Alban; Crochet, Pierre-André; Ryan, Peter G.

    2013-01-01

    The Alaudidae (larks) is a large family of songbirds in the superfamily Sylvioidea. Larks are cosmopolitan, although species-level diversity is by far largest in Africa, followed by Eurasia, whereas Australasia and the New World have only one species each. The present study is the first comprehensive phylogeny of the Alaudidae. It includes 83.5% of all species and representatives from all recognised genera, and was based on two mitochondrial and three nuclear loci (in total 6.4 kbp, although ...

  7. Redefinition of Zehneria and four new related genera (Cucurbitaceae), with an enumeration of the Australasian and Pacific species

    NARCIS (Netherlands)

    Wilde, de W.J.J.O.; Duyfjes, B.E.E.

    2006-01-01

    The genus Zehneria Endl. is split into 5 genera, of which 4 are new: Indomelothria, Neoachmandra, Scopella, and Urceodiscus. Apart from several new combinations and taxa of subspecific rank, the following species are described as new: I. chlorocarpa, N. backeri, N. lancifolia, N. macrantha, N.

  8. The Doryctinae (Braconidae of Costa Rica: genera and species of the tribe Heterospilini

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    Paul Marsh

    2013-11-01

    Full Text Available A comprehensive taxonomic study is presented for the four genera and 286 species of the doryctine tribe Heterospilini occurring in Costa Rica. The tribe is represented almost entirely by the 280 species of the genus Heterospilus Haliday. Keys for identification of the genera and species are provided and the genera and species are described and illustrated. An interactive key to the species of Heterospilus also was prepared using Lucid Builder. The following new genus and species are described from Costa Rica: Paraheterospilus gen. n., P. ceciliaensis sp. n., P. eumekus sp. n., P. wilbotgardus sp. n., Heterospilus achi sp. n., H. achterbergi sp. n., H. aesculapius sp. n., H. agujas sp. n., H. agujasensis sp. n., H. alajuelus sp. n., H. albocoxalis sp. n., H. alejandroi sp. n., H. amuzgo sp. n., H. angelicae sp. n., H. angustus sp. n., H. aphrodite sp. n., H. apollo sp. n., H. arawak sp. n., H. areolatus sp. n., H. artemis sp. n., H. athena sp. n., H. attraholucus sp. n., H. aubreyae sp. n., H. austini sp. n., H. azofeifai sp. n., H. bacchus sp. n., H. barbalhoae sp. n., H. bennetti sp. n., H. bicolor sp. n., H. boharti sp. n., H. borucas sp. n., H. braeti sp. n., H. brethesi sp. n., H. breviarius sp. n., H. brevicornus sp. n., H. bribri sp. n., H. brullei sp. n., H. bruesi sp. n., H. cabecares sp. n., H. cacaoensis sp. n., H. cachiensis sp. n., H. cameroni sp. n., H. cangrejaensis sp. n., H. careonotaulus sp. n., H. caritus sp. n., H. carolinae sp. n., H. cartagoensis sp. n., H. catiensis sp. n., H. catorce sp. n., H. cero sp. n., H. chaoi sp. n., H. chilamatensis sp. n., H. chocho sp. n., H. chorotegus sp. n., H. chorti sp. n., H. cinco sp. n., H. cocopa sp. n., H. colliletus sp. n., H. colonensis sp. n., H. complanatus sp. n., H. conservatus sp. n., H. cora sp. n., H. corcovado sp. n., H. corrugatus sp. n., H. costaricensis sp. n., H. cressoni sp. n., H. cuatro sp. n., H. curtisi sp. n., H. cushmani sp. n., H. dani sp. n., H. demeter sp. n., H

  9. The Doryctinae (Braconidae) of Costa Rica: genera and species of the tribe Heterospilini.

    Science.gov (United States)

    Marsh, Paul M; Wild, Alexander L; Whitfield, James B

    2013-01-01

    A comprehensive taxonomic study is presented for the four genera and 286 species of the doryctine tribe Heterospilini occurring in Costa Rica. The tribe is represented almost entirely by the 280 species of the genus Heterospilus Haliday. Keys for identification of the genera and species are provided and the genera and species are described and illustrated. An interactive key to the species of Heterospilus also was prepared using Lucid Builder. The following new genus and species are described from Costa Rica: Paraheterospilus gen. n., P. ceciliaensis sp. n., P. eumekus sp. n., P. wilbotgardus sp. n., Heterospilus achi sp. n., H. achterbergi sp. n., H. aesculapius sp. n., H. agujas sp. n., H. agujasensis sp. n., H. alajuelus sp. n., H. albocoxalis sp. n., H. alejandroi sp. n., H. amuzgo sp. n., H. angelicae sp. n., H. angustus sp. n., H. aphrodite sp. n., H. apollo sp. n., H. arawak sp. n., H. areolatus sp. n., H. artemis sp. n., H. athena sp. n., H. attraholucus sp. n., H. aubreyae sp. n., H. austini sp. n., H. azofeifai sp. n., H. bacchus sp. n., H. barbalhoae sp. n., H. bennetti sp. n., H. bicolor sp. n., H. boharti sp. n., H. borucas sp. n., H. braeti sp. n., H. brethesi sp. n., H. breviarius sp. n., H. brevicornus sp. n., H. bribri sp. n., H. brullei sp. n., H. bruesi sp. n., H. cabecares sp. n., H. cacaoensis sp. n., H. cachiensis sp. n., H. cameroni sp. n., H. cangrejaensis sp. n., H. careonotaulus sp. n., H. caritus sp. n., H. carolinae sp. n., H. cartagoensis sp. n., H. catiensis sp. n., H. catorce sp. n., H. cero sp. n., H. chaoi sp. n., H. chilamatensis sp. n., H. chocho sp. n., H. chorotegus sp. n., H. chorti sp. n., H. cinco sp. n., H. cocopa sp. n., H. colliletus sp. n., H. colonensis sp. n., H. complanatus sp. n., H. conservatus sp. n., H. cora sp. n., H. corcovado sp. n., H. corrugatus sp. n., H. costaricensis sp. n., H. cressoni sp. n., H. cuatro sp. n., H. curtisi sp. n., H. cushmani sp. n., H. dani sp. n., H. demeter sp. n., H. dianae sp. n., H

  10. Two new genera and twelve new species of Graphidaceae from Puerto Rico: a case for higher endemism of lichenized fungi in islands of the Caribbean?

    Science.gov (United States)

    Joel A. Mercado-Diaz; Robert Lücking; Sittiporn Parnmen

    2014-01-01

    Two new genera and twelve new species of Graphidaceae are described from Puerto Rico. The two new genera, Borinquenotrema and Paratopeliopsis, are based on a combination of molecular sequence data and phenotype characters. Borinquenotrema, with the single new species B. soredicarpum, features rounded ascomata developing beneath and persistently covered with soralia and...

  11. The treasure trove of yeast genera and species described by Johannes van der Walt (1925-2011).

    Science.gov (United States)

    Smith, Maudy Th; Groenewald, Marizeth

    2012-12-01

    Yeast taxonomy and systematics have in recent years been dealt with intensively primarily by a small group of individual researchers with particular expertise. Amongst these was Johannes P. van der Walt, who had a major role in shaping our current understanding of yeast biodiversity and taxonomy. Van der Walt based his taxonomic studies not only on available cultures, but also by going into the field to isolate yeasts from various substrates. This pioneering work led to the discovery of many new genera and species, which were deposited in the Centraalbureau voor Schimmelcultures (CBS) collections for future studies in taxonomy, genomics, and industrial uses. These treasures collected during more than 60 years provide an outstanding legacy to the yeast community and will continue to exist in his absence. This contribution provides a comprehensive overview of the current nomenclatural and taxonomic status of the yeast genera and species introduced by van der Walt during his career.

  12. Description of four new genera and five new species of cicadas from New Caledonia (Insecta: Hemiptera, Cicadoidea, Cicadidae).

    Science.gov (United States)

    Delorme, Quentin

    2017-03-13

    The four endemic new genera Paulaudalna gen. nov., Bispinalta gen. nov., Melanesiana gen. nov. and Strepuntalna gen. nov. are described from New Caledonia. The genus Paulaudalna includes two new species: Paulaudalna marginata sp. nov., as type species, and Paulaudalna amieuensis sp. nov. The genus Bispinalta is described from the new species Bispinalta caledonica sp. nov., and comes from bushy forest at summit of pic Ouitchambo at Boulouparis. The genus Melanesiana is described from the new species Melanesiana kataouii sp. nov., that is found in bushy forest at massif du Kepeto (Pouembout). The genus Strepuntalna is represented by the new species Strepuntalna. renaudetii sp. nov., and is encountered in bushy forest of south and central chain. Except Paulaudalna amieuensis, male calling songs of the new species are described from field recordings.

  13. Two new genera and two new species of proteocephalidean tapeworms (Eucestoda) from reptiles and amphibians in Australia.

    Science.gov (United States)

    de Chambrier, Sophie; de Chambrier, Alain

    2010-11-01

    The examination of the type series of Ophiotaenia Gallardi (Johnston, 1911) (syn. Proteocephalus gallardi Johnston, 1911) revealed that it is a mixture of two species of different genera. Lectotype of Ophiotaenia gallardi is designated and the species is redescribed on the basis of it, conspecific paralectotypes and additional materials. The remaining part of the type series belongs to Vandiermenia gen. n. (Acanthotaeniinae), with V Beveridgei sp. n. as the type- and only species. The new genus differs from all other acanthotaeniine genera, i.e. Rostellotaenia Freze, 1963, Acanthotaenia von Linstow, 1903 and Kapsulotaenia Freze, 1963, by the presence of cortical uterine stem and paramuscular vitelline follicles, particular structure of the internal longitudinal musculature (absent laterally and more developed than in the three above-mentioned genera) and testes limited in two fields separated medially. Type series of Ophiotaenia mjobergi (Nybelin, 1917) (syn. Crepidobothrium mjobergi Nybelin, 1917), O. amphiboluri (Nybelin, 1917) (syn. Crepidobothrium amphiboluri Nybelin, 1917), O. striata (Johnston, 1914) (syn. Acanthotaenia striata Johnston, 1914) and O. longmani Johnston, 1916 are revised and compared with Ophiotaenia gallardi. Australotaenia hylae (Johnston, 1912) comb. n. is proposed for Ophiotaenia hylae Johnston, 1912. Australotaenia gen. n. differs from the remaining genera of the subfamily Acanthotaeniinae by (1) the Type 2 of the formation of the uterus (sensu de Chambrier et al. 2004) (all the other acanthotaeniines have the Type 1 of uterine development), (2) the cortical position of the uterine stem (all the other genera have medullary uterine stem) and (3) the morphology of the internal longitudinal musculature, which is composed of few well-developed bundles of fibres (in contrast to the other genera). The new genus also differs from ãby eggs not in clusters, the presence of two testicular fields (versus one in Vandiermenia) and the structure of the

  14. Bioactive alkaloids produced by fungi. I. Updates on alkaloids from the species of the genera Boletus, Fusarium and psilocybe.

    Science.gov (United States)

    Mahmood, Zafar Alam; Ahmed, Syed Waseemuddin; Azhar, Iqbal; Sualeh, Mohammad; Baig, Mirza Tasawer; Zoha, Sms

    2010-07-01

    Fungi, in particular, are able in common with the higher plants and bacteria, to produce metabolites, including alkaloids. Alkaloids, along with other metabolites are the most important fungal metabolites from pharmaceutical and industrial point of view. Based on this observation, the authors of this review article have tried to provide an information on the alkaloids produced by the species of genera: Boletus, Fusarium and Psilocybef from 1981-2009. Thus the review would be helpful and provides valuable information for the researchers of the same field.

  15. Palpimanid spiders from Guyana: new species of the genera Fernandezina and Otiothops (Araneae, Palpimanidae, Otiothopinae

    Directory of Open Access Journals (Sweden)

    Grismado Cristian J.

    2002-01-01

    Full Text Available Two new species of the spider family Palpimanidae from Guyana are described: Fernandezina takutu, the first species of this genus known from this country andOtiothops giralunas, that seems to be the sister species of O. goloboffi Grismado, 1996 from northwestern Argentina.

  16. Three new genera and three new species of Lasiopteridi (Diptera: Cecidomyiidae) on Rubiaceae from Guadeloupe, French West Indies, and a key to genera of Neotropical Lasiopteridi unplaced to tribe

    OpenAIRE

    Gagné, Raymond J.; Étienne, Jean

    2015-01-01

    Three new genera of Lasiopteridi (Diptera: Cecidomyiidae), Faramitella Gagné, new genus, Anapeza Gagné, new genus, and Pellacara Gagné, new genus, each with one new species, are described. The new species are from leaf galls on Rubiaceae collected in Guadeloupe, F.W.I.: Faramitella planicauda Gagné, new species, was reared from Faramea occidentalis (L.) A. Rich.; Anapeza tumida Gagné, new species, and Pellacara postica, new species, were both reared from Psychotria mapourioides DC. The three ...

  17. New species and notes on genera of the Celastraceae (incl. Hippocrateaceae). III

    NARCIS (Netherlands)

    Mennega, A.M.W.

    1983-01-01

    A description is given of two new species in the genus Pristimera, P. dariense from Panama and P. caudata from Suriname. P. dariense differs by its flattened disk from the other New World species of the genus, but would fit in the subgenus Trochantha N. Hallé known from Africa. Cuervea crenulata sp.

  18. Rapid detection of human fecal Eubacterium species and related genera by nested PCR method.

    Science.gov (United States)

    Kageyama, A; Benno, Y

    2001-01-01

    PCR procedures based on 16S rDNA gene sequence specific for seven Eubacterium spp. and Eggerthella lenta that predominate in the human intestinal tract were developed, and used for direct detection of these species in seven human feces samples. Three species of Eggerthella lenta, Eubacterium rectale, and Eubacterium eligens were detected from seven fecal samples. Eubacterium biforme was detected from six samples. It was reported that E. rectale, E. eligens, and E. biforme were difficult to detect by traditional culture method, but the nested PCR method is available for the detection of these species. This result shows that the nested PCR method utilizing a universal primer pair, followed by amplification with species-specific primers, would allow rapid detection of Eubacterium species in human feces.

  19. Checklist of American sand flies (Diptera, Psychodidae, Phlebotominae: genera, species, and their distribution

    Directory of Open Access Journals (Sweden)

    Paloma Helena Fernandes Shimabukuro

    2017-03-01

    Full Text Available Phlebotomine sand flies are dipteran insects of medical importance because many species are involved in the transmission of pathogens between human and non-human animals. A total of 530 American species of sand flies is presented in an updated checklist, along with their author(s and year of publication using the classification by Galati (1995, 2003. Distribution by country is also provided.

  20. The coralline genera Sporolithon and Heydrichia (Sporolithales, Rhodophyta) clarified by sequencing type material of their generitypes and other species.

    Science.gov (United States)

    Richards, Joseph L; Sauvage, Thomas; Schmidt, William E; Fredericq, Suzanne; Hughey, Jeffery R; Gabrielson, Paul W

    2017-10-01

    Interspecific systematics in the red algal order Sporolithales remains problematic. To re-evaluate its species, DNA analyses were performed on historical type material and recently collected specimens assigned to the two genera Sporolithon and Heydrichia. Partial rbcL sequences from the lectotype specimens of Sporolithon ptychoides (the generitype species) and Sporolithon molle, both from El Tor, Egypt, are exact matches to field-collected topotype specimens. Sporolithon crassum and Sporolithon erythraeum also have the same type locality; material of the former appears to no longer exist, and we were unable to PCR amplify DNA from the latter. A new species, Sporolithon eltorensis, is described from the same type locality. We have not found any morpho-anatomical characters that distinguish these three species. No sequenced specimens reported as S. ptychoides from other parts of the world represent this species, and likely reports of S. ptychoides and S. molle based on morpho-anatomy are incorrect. A partial rbcL sequence from the holotype of Sporolithon dimotum indicates it is not a synonym of S. ptychoides, and data from the holotype of S. episporum confirm its specific recognition. DNA sequences from topotype material of Heydrichia woelkerlingii, the generitype species, and isotype material of Heydrichia cerasina confirm that these are distinct species; the taxon reported to be H. woelkerlingii from New Zealand is likely an undescribed species. Type specimens of all other Sporolithon and Heydrichia species need to be sequenced to confirm that they are distinct species; morpho-anatomical studies have proved inadequate for this task. © 2017 Phycological Society of America.

  1. Earthworms from Matsu, Taiwan with descriptions of new species of the genera Amynthas (Oligochaeta: Megascolecidae) and Drawida (Oligochaeta: Moniligastridae).

    Science.gov (United States)

    Shen, Huei-Ping; Chang, Chih-Han; Chih, Wen-Jay

    2015-06-18

    In 2012, we conducted earthworm surveys in Matsu Islands, and described five new species of the genera Amynthas and Metaphire and reported two new records, Desmogaster sinensis Gates, 1930 and Ocnerodrilus occidentalis Eisen, 1878. This paper describes three new species, one of them with two new subspecies, Amynthas nanganensis nanganensis sp. nov. et ssp. nov. and Amynthas nanganensis beiganensis ssp. nov., Drawida beiganica sp. nov. and Drawida dongyinica sp. nov., provides a new record of Drawida koreana Kobayashi, 1938 from the remaining specimens collected in the surveys, reports DNA barcodes (the 5' end sequences of the mitochondrial cytochrome c oxidase subunit 1 gene) from type specimens and further reference specimens of the new species, and lists a total of 27 earthworm species and subspecies found from Matsu Islands. Pheretimoid earthworms made up 66.7% of the total number of the species, with Metaphire matsuensis Shen, 2014 and Metaphire californica (Kinberg, 1867) the most dominant. Our findings indicate that the earthworm fauna of Matsu Islands is more closely related to that of warm temperate China than to Taiwan or tropical southern China.

  2. Discovering the Unknown: Improving Detection of Novel Species and Genera from Short Reads

    Directory of Open Access Journals (Sweden)

    Gail L. Rosen

    2011-01-01

    “unknown” class and show that the modified version of PhymmBL has similar or better overall classification performance than the other modified algorithms, especially for the species-level and ultrashort reads. Finally, we evaluate theperformance of several algorithms on a real acid mine drainage dataset.

  3. Species and genera of soil nematodes in forest ecosystems of the Vihorlat Protected Landscape Area, Slovakia

    Czech Academy of Sciences Publication Activity Database

    Háněl, Ladislav; Čerevková, A.

    2010-01-01

    Roč. 47, č. 2 (2010), s. 123-135 ISSN 0440-6605 Grant - others:Slovak Academy of Sciences(SK) 2/7191/27 Institutional research plan: CEZ:AV0Z60660521 Keywords : forest * soil nematodes * species richness Subject RIV: EH - Ecology, Behaviour Impact factor: 0.847, year: 2010

  4. VOLUMES OF GENERA AND SPECIES COMPOSITION OF ORIBATIDA (ACARIFORMES, ORIBATIDA OF THE INTERNAL MOUNTAIN DAGESTAN

    Directory of Open Access Journals (Sweden)

    G. M. Abdurakhmanov

    2013-01-01

    Full Text Available This work is based on research and materials collected from 2000 to 2012, with the application of the method of selection of soil samples, according to the methodology of the quantitative survey. As a result of the conducted researches on the territory of the internal mountain Dagestan found 190 species of Oribatida belonging to 83 generations.

  5. Relevance of wing morphology in distinguishing and classifying genera and species of Stenogastrinae wasps

    NARCIS (Netherlands)

    Baracchi, D.; Dapporto, L.; Turillazzi, S.

    2011-01-01

    The phylogeny of the Stenogastrinae wasps is still under discussion and their systematic incomplete. In the present work we used geometric morphometrics, a technique based on a rigorous statistical assessment of shape, to compare the forewings of fifteen species of Stenogastrinae wasps belonging to

  6. Multilocus phylogeny of the avian family Alaudidae (larks) reveals complex morphological evolution, non-monophyletic genera and hidden species diversity.

    Science.gov (United States)

    Alström, Per; Barnes, Keith N; Olsson, Urban; Barker, F Keith; Bloomer, Paulette; Khan, Aleem Ahmed; Qureshi, Masood Ahmed; Guillaumet, Alban; Crochet, Pierre-André; Ryan, Peter G

    2013-12-01

    The Alaudidae (larks) is a large family of songbirds in the superfamily Sylvioidea. Larks are cosmopolitan, although species-level diversity is by far largest in Africa, followed by Eurasia, whereas Australasia and the New World have only one species each. The present study is the first comprehensive phylogeny of the Alaudidae. It includes 83.5% of all species and representatives from all recognised genera, and was based on two mitochondrial and three nuclear loci (in total 6.4 kbp, although not all loci were available for all species). In addition, a larger sample, comprising several subspecies of some polytypic species was analysed for one of the mitochondrial loci. There was generally good agreement in trees inferred from different loci, although some strongly supported incongruences were noted. The tree based on the concatenated multilocus data was overall well resolved and well supported by the data. We stress the importance of performing single gene as well as combined data analyses, as the latter may obscure significant incongruence behind strong nodal support values. The multilocus tree revealed many unpredicted relationships, including some non-monophyletic genera (Calandrella, Mirafra, Melanocorypha, Spizocorys). The tree based on the extended mitochondrial data set revealed several unexpected deep divergences between taxa presently treated as conspecific (e.g. within Ammomanes cinctura, Ammomanes deserti, Calandrella brachydactyla, Eremophila alpestris), as well as some shallow splits between currently recognised species (e.g. Certhilauda brevirostris-C. semitorquata-C. curvirostris; Calendulauda barlowi-C. erythrochlamys; Mirafra cantillans-M. javanica). Based on our results, we propose a revised generic classification, and comment on some species limits. We also comment on the extraordinary morphological adaptability in larks, which has resulted in numerous examples of parallel evolution (e.g. in Melanocorypha mongolica and Alauda leucoptera [both

  7. Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia.

    Science.gov (United States)

    Dobritsa, Anatoly P; Samadpour, Mansour

    2016-08-01

    It has been proposed to split the genus Burkholderia into two genera according to phylogenetic clustering: (1) a genus retaining this name and consisting mainly of animal and plant pathogens and (2) the genus Paraburkholderia including so-called environmental bacteria. The latter genus name has been validly published recently. During the period between the effective and valid publications of the genus name Paraburkholderia, 16 novel species of the genus Burkholderiawere described, but only two of them can be classified as members of this genus based on the emended genus description. Analysis of traits and phylogenetic positions of the other 11 species shows that they belong to the genus Paraburkholderia, and we propose to transfer them to this genus. The reclassified species names are proposed as Paraburkholderia dipogonis comb. nov., Paraburkholderia ginsengiterrae comb. nov., Paraburkholderia humisilvae comb. nov., Paraburkholderia insulsa comb. nov., Paraburkholderia kirstenboschensis comb. nov., Paraburkholderia metalliresistens comb. nov., Paraburkholderia monticola comb. nov., Paraburkholderia panaciterrae comb. nov., Paraburkholderia rhizosphaerae comb. nov., Paraburkholderia solisilvae comb. nov. and Paraburkholderia susongensis comb. nov. The remaining three species are transferred to the new genus Caballeronia gen. nov. proposed to accommodate twelve species of the genera Burkholderia and Paraburkholderia forming a distinctive clade in phylogenetic trees. The new genus members are Caballeronia choica comb. nov., Caballeronia cordobensis comb. nov., Caballeronia glathei comb. nov., Caballeronia grimmiae comb. nov., Caballeronia humi comb. nov., Caballeronia megalochromosomata comb. nov., Caballeronia jiangsuensis comb. nov., Caballeronia sordidicola comb. nov., Caballeronia telluris comb. nov., Caballeronia terrestris comb. nov., Caballeronia udeis comb. nov., and Caballeronia zhejiangensis comb. nov.

  8. Two new genera and five new species of Selachinematidae (Nematoda, Chromadorida from the continental slope of New Zealand

    Directory of Open Access Journals (Sweden)

    Daniel Leduc

    2013-11-01

    Full Text Available Two new genera and five new species of Selachinematidae are described from the New Zealand upper continental slope (350-1240 m depth. Synonchiella rotundicauda sp. nov. is characterised by cephalic setae 0.25 cbd long, mandibles each with two pairs of hooks and two wing-like projections laterally, eight cup-shaped pre-cloacal supplements and short rounded tail. Pseudocheironchus gen. nov. is similar to Cheironchus, but differs from the latter in having a cuticle without lateral differentiation, cephalic setae only slightly longer than the outer labial sensillae, and a posterior buccal cavity with three equal mandibles. Pseudocheironchus ingluviosus gen. et sp. nov. is characterised by mandibles with eight blunt teeth, multispiral amphideal fovea with five turns, and a short rounded tail. Males of this new species with 17-19 cup-shaped pre-cloacal supplements. Males of the genus Cobbionema are described for the first time; C. trigamma sp. nov. is characterised by four long cephalic setae and six smaller outer labial setae in one circle, six rhabdions surrounding the anterior buccal cavity, each with two pairs of pointed projections at their posterior extremities, posterior buccal cavity widening posteriorly, with three pairs of rhabdions fused posteriorly and widening anteriorly, males with two testes pointing anteriorly and with reflexed posterior testis, and no pre-cloacal supplements. Gammanema agglutinans sp. nov. is characterised by a short, stout body often covered in adhering mucus and detritus, cuticle with minute spines, leaf-shaped somatic setae with ducts, sexual dimorphism in the shape of the amphideal fovea (loop-shaped in males and spiral in females, posterior buccal cavity with three pairs of broad, column-shaped rhabdions fused anteriorly, intestine cells with orange-brown granules, and small tubular pre-cloacal supplements. Bendiella gen. nov. is most similar to Halichoanolaimus, but differs from the latter, and all other genera

  9. Microhabitat use by species of the genera Bothrops and Crotalus (Viperidae in semi-extensive captivity

    Directory of Open Access Journals (Sweden)

    CA Gomes

    2012-01-01

    Full Text Available Many factors influence microhabitat including climate and the occurrence of predators, prey and suitable shelters. The influence of predators in a semi-extensive breeding system is minimized due to frequent monitoring of the area. This situation enables the independent analysis of such other variables as refuges and temperature. Some specimens of the Viperidae family are kept in a semi-extensive breeding system at the Butantan Institute for display and study. These animals are widely distributed in the Atlantic Forest and Cerrado, two biomes with distinct climatic characteristics. We compared the daily activity pattern and microhabitat use of the species Bothrops jararaca and Crotalus durissus terrificus. Our main questions were whether rattlesnakes and lancehead snakes respond to habitat selection differently in similar climatic conditions and if they choose similar microhabitats. Species of the genus Bothrops were frequently found under shelters regardless of the time of day. On the other hand, snakes of the genus Crotalus were frequently found sheltered during the early morning, then migrated to sunnier areas and returned to shelters in late afternoon.

  10. Two genera Foersteria Szépligeti, 1896 and Polydegmon Foerster, 1862 (Hymenoptera, Braconidae, Brachistinae) from China, with description of a new species.

    Science.gov (United States)

    Yan, Cheng-Jin; He, Jun-Hua; Chen, Xue-Xin

    2013-01-01

    The genera Foersteria Szépligeti, 1896 and Polydegmon Foerster, 1862 (Hymenoptera, Braconidae, Brachistinae) are recorded for the first time from China. A new species, Foersteria xinjiangensis Yan & Chen, sp. nov., is described and illustrated. A key to the Palaearctic species of Foersteria is given. In addition, Polydegmon sinuatus Foerster, 1862 is illustrated in detail for the first time.

  11. New species of Diabrotica Chevrolat (Coleoptera: Chrysomelidae: Galerucinae and a key to Diabrotica and related genera: results of a synopsis of North and Central American Diabrotica species

    Directory of Open Access Journals (Sweden)

    Alexander Derunkov

    2015-02-01

    Full Text Available The following 18 new species of Diabrotica are described and illustrated as a result of the synopsis of North and Central American species: D. barclayi sp. nov., Guatemala; D. caveyi sp. nov., Costa Rica; D. costaricensis sp. nov., Costa Rica; D. dmitryogloblini sp. nov., Mexico; D. duckworthorum sp. nov., Honduras; D. hartjei sp. nov., Panama; D. josephbalyi sp. nov., Costa Rica; D. lawrencei sp. nov., Mexico; D. mantillerii sp. nov., Panama; D. martinjacobyi sp. nov., Honduras; D. mitteri sp. nov., Panama; D. perkinsi sp. nov., Guatemala; D. redfordae sp. nov., Costa Rica; D. reysmithi sp. nov., Costa Rica; D. salvadorensis sp. nov., El Salvador; D. sel sp. nov., Panama; D. spangleri sp. nov., Costa Rica; D. waltersi sp. nov., Panama. In addition, a key to separate Diabrotica from related genera is presented.

  12. Duocrassana longula, new genus and species of leafhopper (Hemiptera: Cicadellidae: Deltocephalinae) from southern Mexico and its relationship to other genera in Athysanini.

    Science.gov (United States)

    Pinedo-Escatel, J A; Zahniser, J N; Dietrich, C H; Moya-Raygoza, G

    2016-11-24

    The new leafhopper genus, Duocrassana Pinedo-Escatel, Zahniser & Dietrich, gen. nov., and its type species, Duocrassana longula Pinedo-Escatel, Zahniser & Dietrich sp. nov., are described and illustrated based on material from Oaxaca, Mexico. The relationship with other genera in the tribe Athysanini is discussed, highlighting the importance of male genitalia for its identification.

  13. Three new genera and three new species of Nearctic Lasiopteridi (Diptera: Cecidomyiidae: Cecidomyiinae) from Asteraceae and Caprifoliaceae, and the tribe Rhopalomyiini subsumed under Oligotrophini.

    Science.gov (United States)

    Gagné, Raymond J

    2016-08-30

    Three new Nearctic genera of gall midges (Diptera: Cecidomyiidae), each with a new species, are described: Helianthecis Gagné for Helianthecis capitum Gagné, new species, that lives in flower heads of Helianthus spp. (Asteraceae) from North Dakota to Texas; Lonicerae Gagné for Lonicerae russoi Gagné, new species, and Lonicerae lonicera (Felt), new combination, that form bud galls on Lonicera spp. (Caprifoliaceae) in California; and Chiosperma Gagné for Chiosperma turgidum Gagné, new species, that forms a bud gall on Symphoricarpos albus (L.) S.F. Blake (Caprifoliaceae) in Washington. The three new genera belong to the supertribe Lasiopteridi and are placed in the tribe Oligotrophini. The tribes Oligotrophini and Rhopalomyiini are combined.

  14. Taxonomic Reevaluation of Phrynops (Testudines: Chelidae with the description of two new genera and a new species of Batrachemys

    Directory of Open Access Journals (Sweden)

    William P. McCord

    2001-06-01

    Full Text Available Relationships among turtle species loosely categorized within the South American genus Phrynops are explored. Three once recognized genera (Batrachemys, Mesoclemmys and Phrynops that were demoted to subgenera, and then synonymized with Phrynops, are demonstrated to warrant full recognition based on morphometric analysis, skull osteology, and mitochondrial and nuclear gene sequencing. Mesoclemmys is resurrected from the synonymy of Phrynops as a monotypic genus including M. gibba. The genus Rhinemys, previously a synonym of Phrynops, is resurrected for the species R. rufipes. Ranacephala gen. nov. is described to inciude the species R hogei. The genus Batrachemys is resurrected from the synonymy of Phrynops and inciudes B. dahli, B. nasuta B. raniceps, B. tuberculata, and B. zuliae. The taxon vanderhaegei is placed in Bufocephala gen. nov. The genus Phrynops is redefined to include the taxa P. geoffroanus, P. hilarii, P. tuberosus and P.williamsi. Ciadistic analysis of morphological data supports this taxonomy. A new species of Batrachemys is described from the western Amazon region, and is distinguished by having facial markings in juveniles, a relatively wide head, and a flattened shell. The new species, B. heliostemma sp. nov., is sympatric with and most similar to the recently resurrected form Batrachemys raniceps in the upper Amazonian region of Peru and adjacent Brazil, Ecuador, Venezuela, and Colombia. Lastly, morphometric data from living and museum specimens of all species of Batrachemys are presented.Se investigaron las afinidades entre las especies de tortugas agrupadas casualmente dentro del género suramericano Phrynops. Tres géneros anteriormente reconocidos (Batrachemys, Mesoclemmys, y Phrynops, que fueron subsecuentemente colocados como sub-géneros, y luego puestos bajo sinonimia de Phrynops, se reconocen ahora como géneros válidos basándose en análisis morfométrico, osteología craneal y de secuencias génicas, nucleares y

  15. Revision of the subfamily Opiinae (Hymenoptera, Braconidae from Hunan (China, including thirty-six new species and two new genera

    Directory of Open Access Journals (Sweden)

    Li Xi-Ying

    2013-02-01

    postpectalis sp. n. are described. All species are illustrated and keyed. In total 30 species of Opiinae are sequenced and the cladograms are presented. Neopius Gahan, 1917, Opiognathus Fischer, 1972, Opiostomus Fischer, 1972, and Rhogadopsis Brèthes, 1913, are treated as a valid genera based on molecular and morphological differences. Opius vittata Chen & Weng, 2005 (not Opius vittatus Ruschka, 1915, O. ambiguus Weng & Chen, 2005 (not Wesmael, 1835 and O. mitis Chen & Weng, 2005 (not Fischer, 1963 are primary homonyms and are renamed into Phaedrotoma depressa Li & van Achterberg, nom. n., Opius cheni Li & van Achterberg, nom. n. and O. wengi Li & van Achterberg, nom. n., respectively. Phaedrotoma terga (Chen & Weng, 2005 comb. n., Diachasmimorpha longicaudata (Ashmead, 1905 and Biosteres pavitita Chen & Weng, 2005, are reported new for Hunan, Opiostomus aureliae (Fischer, 1957 comb. n. is new for China and Hunan; Xynobius maculipennis (Enderlein, 1912 comb. n. is new for Hunan and continental China and Rhogadopsis longuria (Chen & Weng, 2005 comb. n. is new for Hunan. The following new combinations are given: Apodesmia puncta (Weng & Chen, 2005 comb. n., A. tracta (Weng & Chen, 2005 comb. n., Areotetes laevigatus (Weng & Chen, 2005 comb. n., Phaedrotoma dimidia (Chen & Weng, 2005 comb. n., P. improcera (Weng & Chen, 2005 comb. n., P. amputata (Weng & Chen, 2005 comb. n., P. larga (Weng & Chen, 2005 comb. n., P. osculas (Weng & Chen, 2005 comb. n., P. postuma (Chen & Weng, 2005 comb. n., P. rugulosa (Chen & Weng, 2005 comb. n., P. tabularis (Weng & Chen, 2005 comb. n., Rhogadopsis apii (Chen & Weng, 2005 comb. n., R. dimidia (Chen & Weng, 2005 comb. n., R. diutia (Chen & Weng, 2005 comb. n., R. longuria (Chen & Weng, 2005 comb. n., R. pratellae (Weng & Chen, 2005 comb. n., R. pratensis (Weng & Chen, 2005 comb. n., R. sculpta (Chen & Weng, 2005 comb. n., R. sulcifer (Fischer, 1975 comb. n., R. tabidula (Weng & Chen, 2005 comb. n., Xynobius complexus (Weng & Chen, 2005 comb. n

  16. Revision of the subfamily Opiinae (Hymenoptera, Braconidae) from Hunan (China), including thirty-six new species and two new genera

    Science.gov (United States)

    Li, Xi-Ying; van Achterberg, Cornelis; Tan, Ji-Cai

    2013-01-01

    van Achterberg & Li, gen. n. (type species: Areotetes carinuliferus sp. n.) and Coleopioides van Achterberg & Li, gen. n. (type species: Coleopioides postpectalis sp. n. are described. All species are illustrated and keyed. In total 30 species of Opiinae are sequenced and the cladograms are presented. Neopius Gahan, 1917, Opiognathus Fischer, 1972, Opiostomus Fischer, 1972, and Rhogadopsis Brèthes, 1913, are treated as a valid genera based on molecular and morphological differences. Opius vittata Chen & Weng, 2005 (not Opius vittatus Ruschka, 1915), Opius ambiguus Weng & Chen, 2005 (not Wesmael, 1835) and Opius mitis Chen & Weng, 2005 (not Fischer, 1963) are primary homonymsandarerenamed into Phaedrotoma depressa Li & van Achterberg, nom. n., Opius cheni Li & van Achterberg, nom. n. andOpius wengi Li & van Achterberg, nom. n., respectively. Phaedrotoma terga (Chen & Weng, 2005) comb. n.,Diachasmimorpha longicaudata (Ashmead, 1905) and Biosteres pavitita Chen & Weng, 2005, are reported new for Hunan, Opiostomus aureliae (Fischer, 1957) comb. n. is new for China and Hunan; Xynobius maculipennis(Enderlein, 1912) comb. n. is new for Hunan and continental China and Rhogadopsis longuria (Chen & Weng, 2005) comb. n. is new for Hunan. The following new combinations are given: Apodesmia puncta (Weng & Chen, 2005) comb. n., Apodesmia tracta (Weng & Chen, 2005) comb. n., Areotetes laevigatus (Weng & Chen, 2005) comb. n., Phaedrotoma dimidia (Chen & Weng, 2005) comb. n., Phaedrotoma improcera (Weng & Chen, 2005) comb. n., Phaedrotoma amputata (Weng & Chen, 2005) comb. n., Phaedrotoma larga (Weng & Chen, 2005) comb. n., Phaedrotoma osculas (Weng & Chen, 2005) comb. n., Phaedrotoma postuma (Chen & Weng, 2005) comb. n., Phaedrotoma rugulosa (Chen & Weng, 2005) comb. n., Phaedrotoma tabularis (Weng & Chen, 2005) comb. n., Rhogadopsis apii (Chen & Weng, 2005) comb. n., Rhogadopsis dimidia (Chen & Weng, 2005) comb. n., Rhogadopsis diutia (Chen & Weng, 2005) comb. n., Rhogadopsis

  17. Two new genera and five new species of Mugadina-like small grass cicadas (Hemiptera: Cicadidae: Cicadettini) from Central and Eastern Australia: comparative morphology, songs, behaviour and distributions.

    Science.gov (United States)

    Ewart, A

    2018-04-20

    Moulds (2012) established the genus Mugadina for two small cicadas, M. marshalli (Distant) and M. emma (Goding and Froggatt), both grass inhabiting species known from Queensland and New South Wales. Both species are notable for their relatively simple 'ticking' songs. Moulds further noted that there were at least two superficially similar genera of cicadas, but each with different genitalia. This paper describes two new genera of small (9-15 mm body lengths) and distinctive grass cicadas with genitalia that are very similar to those of Mugadina, but possess clear morphological, colour and calling song differences. The new genera are: Heremusina n. gen. with two known species namely H. udeoecetes n. sp. and H. pipatio n. sp.; the second new genus is Xeropsalta n. gen., containing four known species, X. thomsoni n. sp., X. aridula n. sp., X. rattrayi n. sp., and X. festiva n. comb. Heremusina n. gen. species are described from the Alice Springs area of Northern Territory and the Cloncurry area of northwest Queensland, from arid to semi arid habitats. The Xeropsalta n. gen. species are described from western, southwest and central Queensland, and from the Simpson and Strzelecki Deserts in northeastern South Australia and northwestern New South Wales, respectively, all locations in very arid to arid habitats, but close to seasonal (often irregular) rivers and lakes. X. festiva n. comb. occurs in semi arid habitats in southern and southeastern Australia.        Detailed taxonomic descriptions are provided of the new species, together with distributions, habitats, and the calling songs. The Heremusina species emit songs with short repetitive buzzing echemes, the echeme durations differing between each species. The Xeropsalta songs are notable for their complexity, containing multiple elements with rapid changes of amplitudes and temporal structures, rather atypical of the songs of most small grass dwelling cicadas. Detailed song structures distinguishing each of

  18. Study on the Tribe Ochyromerini (Coleoptera, Curculionidae) from East Asia I, Descriptions of New Species of the Genera Endaeus and Endaenidius

    OpenAIRE

    Kojima, Hiroaki; Morimoto, Katsura

    1995-01-01

    This is the first part of our systematic study on the tribe Ochyromerini (=Endaeini) from East Asia with descriptions of 28 new species of the weevils in the genera Endaeus Schoenherr and Endaenidius Morimoto as follows: Endaeus albolineatus sp. nov. (E. Malaysia), Endaeus niger sp. nov. (E. Malaysia), Endaeus zonatus sp. nov. (E. Malaysia), Endaeus robustus sp. nov. (Thailand), Endaeus longipes sp. nov. (E. Malaysia), Endaeus formosanus sp. nov. (Taiwan), Endaeus elongatus sp. nov. (Taiwan),...

  19. Review of world genera of Ceinae, with the description of two new Palaearctic species of Spalangiopelta Masi (Hymenoptera, Chalcidoidea, Pteromalidae

    Directory of Open Access Journals (Sweden)

    Mircea-Dan Mitroiu

    2016-12-01

    Full Text Available The paper provides the first illustrated key to all described genera of Ceinae, i.e., Bohpa Darling, 1991, Cea Walker, 1837, and Spalangiopelta Masi, 1922. Based on the study of the original material, the genus Diparisca Hedqvist, 1964 stat. nov. is removed from the synonymy with Spalangiopelta and its higher classification is discussed. Spalangiopelta rameli sp. nov. and S. viridis sp. nov. are described from Greece and the Canary Islands, respectively.

  20. An appraisal of the phylogenetic relationships of Hypoptopomatini cascudinhos with description of two new genera and three new species (Siluriformes: Loricariidae

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    Maria Laura S. Delapieve

    2017-12-01

    Full Text Available ABSTRACT The discovery of three new taxa of Hypoptotopomatini with ambiguous generic assignment prompted a reanalysis of the phylogenetic relationships of the tribe. The analysis focused on a data matrix of 56 terminals and 107 morphological characters comprising the three new taxa, most species of Hypoptopoma and Otocinclus, and all other species of the tribe. The 162 maximally parsimonious trees of 382 steps, consistency index of 0.41, and retention index of 0.83 were then summarized in a strict consensus tree. The results confirm the monophyly of the Hypoptopomatini, recover four genera as monophyletic (Acestridium, Hypoptopoma, Niobichthys, and Otocinclus, revealed Hypoptopoma and Oxyropsis to be non-monophyletic; and revealed two new genera within Hypoptopomatini. Additionally, Otocinclus was found to be sister to a group with all remaining genera of the tribe; Acestridium and Niobichthys were found to be sister to each other and that clade sister to a group formed by ((Leptotocinclus + Hypoptopoma [part] + (Nannoxyropsis (Oxyropsis + Hypoptopoma [part]. Based on this framework, changes to the classification and the taxonomy of the Hypoptopomatini are suggested and the new taxa are described.

  1. Morphological and mitochondrial DNA data reshuffle the taxonomy of the genera em>Atopochetus> Attems, Litostrophus Chamberlin and em>Tonkinbolus> Verhoeff (Diplopoda: Spirobolida: Pachybolidae), with descriptions of nine new species

    DEFF Research Database (Denmark)

    Pimvichai, Piyatida; Enghoff, Henrik; Panha, Somsak

    2018-01-01

    Species-level taxonomy and phylogeny of two genera of South-East (SE) Asian pachybolid millipedes are analysed with a combination of morphological characters and DNA sequences (two mitochondrial gene fragments: COI and 16S rRNA). Strong support is found for the genera Litostrophus Chamberlin, 192...

  2. The comparative osmoregulatory ability of two water beetle genera whose species span the fresh-hypersaline gradient in inland waters (Coleoptera: Dytiscidae, Hydrophilidae.

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    Susana Pallarés

    Full Text Available A better knowledge of the physiological basis of salinity tolerance is essential to understanding the ecology and evolutionary history of organisms that have colonized inland saline waters. Coleoptera are amongst the most diverse macroinvertebrates in inland waters, including saline habitats; however, the osmoregulatory strategies they employ to deal with osmotic stress remain unexplored. Survival and haemolymph osmotic concentration at different salinities were examined in adults of eight aquatic beetle species which inhabit different parts of the fresh-hypersaline gradient. Studied species belong to two unrelated genera which have invaded saline waters independently from freshwater ancestors; Nebrioporus (Dytiscidae and Enochrus (Hydrophilidae. Their osmoregulatory strategy (osmoconformity or osmoregulation was identified and osmotic capacity (the osmotic gradient between the animal's haemolymph and the external medium was compared between species pairs co-habiting similar salinities in nature. We show that osmoregulatory capacity, rather than osmoconformity, has evolved independently in these different lineages. All species hyperegulated their haemolymph osmotic concentration in diluted waters; those living in fresh or low-salinity waters were unable to hyporegulate and survive in hyperosmotic media (> 340 mosmol kg(-1. In contrast, the species which inhabit the hypo-hypersaline habitats were effective hyporegulators, maintaining their haemolymph osmolality within narrow limits (ca. 300 mosmol kg(-1 across a wide range of external concentrations. The hypersaline species N. ceresyi and E. jesusarribasi tolerated conductivities up to 140 and 180 mS cm(-1, respectively, and maintained osmotic gradients over 3500 mosmol kg(-1, comparable to those of the most effective insect osmoregulators known to date. Syntopic species of both genera showed similar osmotic capacities and in general, osmotic responses correlated well with upper salinity levels

  3. New species of the genera Havelockia and Thyone (Echinodermata: Holothuroidea) and first record of T. crassidisca from the southwestern Atlantic Ocean.

    Science.gov (United States)

    Martins, Luciana; Tavares, Marcos

    2018-04-12

    Two new species in the genera Thyone and Havelockia are described and illustrated based upon specimens collected from off the southeastern Brazilian coast. Thyone florianoi sp. nov. is characterized by having two pillared body wall tables with four-holed discs and introvert with multilocular tables. Thyone crassidisca is recorded herein for the first time from the South Atlantic Ocean (Brazil). Havelockia mansoae sp. nov. is distinctive in having two pillared body wall tables with four-holed discs and introvert with plates. This is the first record of the genus Havelockia from Brazilian waters.

  4. Four new species, DNA barcode library and pre-Pliocene speciation of the euedaphic Afromontane Clivinini genera Trilophidius and Antireicheia (Coleoptera: Carabidae, Scaritinae

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    Vasily V. Grebennikov

    2017-06-01

    Full Text Available We describe and extensively illustrate four new species of euedaphic (= dwelling in the soil Clivinini ground beetles: Trilophidius acastus sp. nov. and T. argus sp. nov. (both from Bioko, Equatorial Guinea, as well as Antireicheia calais sp. nov. and A. zetes sp. nov. (both from the South Pare Mountains, Tanzania. We generate and report all currently available DNA barcode (= cytochrome oxidase subunit I data for euedaphic Afromontane Clivinini of the genera Trilophidius (2 species, four records and Antireicheia (13 species, 43 records. We infer a phylogeny for these beetles using a Maximum Likelihood approach based upon a matrix of 53 sequenced specimens (dx.doi.org/10.5883/DS-ANTIREI with 658 aligned positions. All nominative species represented by two or more sequences are recovered as monophyletic. Both new species of Trilophidius form a weakly supported clade, while all seven species of South African Antireicheia form a moderately supported clade. The genus Antireicheia and the geographical assemblage of its six Tanzanian species are not monophyletic. We perform divergence time estimation in Afrotropical Antireicheia, and our analysis indicates that these lineages diverged predominantly in the middle or late Miocene. We highlight the notable lack of phylogenetic hypothesis linked with the vaguely and variably defined taxon “subfamily Scaritinae” and its subordinated taxa.

  5. Review of the Indo-West Pacific ophidiid genera Sirembo and Spottobrotula (Ophidiiformes, Ophidiidae), with description of three new species

    DEFF Research Database (Denmark)

    Nielsen, Jørgen; Schwarzhans, Werner; Uiblein, Franz

    2015-01-01

    Currently, three of the seven described species of Sirembo Bleeker, 1858 and both species of Spottobrotula Cohen & Nielsen, 1978 are considered valid. The present revision is based on 73 specimens of Sirembo known from the Red Sea to Japan and southwards to off northwestern Australia and northern...

  6. Development and cross-species/genera transferability of microsatellite markers discovered using 454 genome sequencing in chokecherry (Prunus virginiana L.).

    Science.gov (United States)

    Wang, Hongxia; Walla, James A; Zhong, Shaobin; Huang, Danqiong; Dai, Wenhao

    2012-11-01

    Chokecherry (Prunus virginiana L.) (2n = 4x = 32) is a unique Prunus species for both genetics and disease-resistance research due to its tetraploid nature and X-disease resistance. However, no genetic and genomic information on chokecherry is available. A partial chokecherry genome was sequenced using Roche 454 sequencing technology. A total of 145,094 reads covering 4.8 Mbp of the chokecherry genome were generated and 15,113 contigs were assembled, of which 11,675 contigs were larger than 100 bp in size. A total of 481 SSR loci were identified from 234 (out of 11,675) contigs and 246 polymerase chain reaction (PCR) primer pairs were designed. Of 246 primers, 212 (86.2 %) effectively produced amplification from the genomic DNA of chokecherry. All 212 amplifiable chokecherry primers were used to amplify genomic DNA from 11 other rosaceous species (sour cherry, sweet cherry, black cherry, peach, apricot, plum, apple, crabapple, pear, juneberry, and raspberry). Thus, chokecherry SSR primers can be transferable across Prunus species and other rosaceous species. An average of 63.2 and 58.7 % of amplifiable chokecherry primers amplified DNA from cherry and other Prunus species, respectively, while 47.2 % of amplifiable chokecherry primers amplified DNA from other rosaceous species. Using random genome sequence data generated from next-generation sequencing technology to identify microsatellite loci appears to be rapid and cost-efficient, particularly for species with no sequence information available. Sequence information and confirmed transferability of the identified chokecherry SSRs among species will be valuable for genetic research in Prunus and other rosaceous species. Key message A total of 246 SSR primers were identified from chokecherry genome sequences. Of which, 212 were confirmed amplifiable both in chokecherry and other 11 other rosaceous species.

  7. Revision of the genus Dinotoperla Tillyard, 1921 (Plecoptera: Gripopterygidae) using morphological characters and molecular data: Establishes two new genera, three new species and updates the larval taxonomy.

    Science.gov (United States)

    Mynott, Julia H; Suter, Phillip J; Theischinger, Gunther

    2017-01-23

    The larval taxonomy of Australian stoneflies (Plecoptera) shows a large disparity in knowledge when compared to the adult taxonomy with many species having undescribed larval forms. The importance of stoneflies as an indicator group for monitoring aquatic ecosystems means knowledge of the larval taxonomy and the ability to identify species is essential. This study combined morphology and mitochondrial gene sequences to associate the adult and larval life-stages for species of Dinotoperla Tillyard. Morphological identification of adult males was recognised for 17 of the 35 Dinotoperla species and combining molecular data with morphology confirmed eight new adult-larval life stage associations. Further, molecular data supported the larval taxonomy for five morphospecies which remain unassociated. The combination of molecular and morphological methods enabled the larval morphology to be reassessed for the genus Dinotoperla and this has led to the establishment of two new genera, Odontoperla, gen. nov. and Oedemaperla, gen. nov., and the new species Dinotoperla aryballoi, sp. nov, D. tasmaniensis, sp. nov. and Oedemaperla shackletoni, sp. nov. as well as the new or updated descriptions of the larvae of 31 species and a comprehensive dichotomous key to these larvae.

  8. Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.

    Directory of Open Access Journals (Sweden)

    Nuttika Suwannasai

    Full Text Available Thailand, a part of the Indo-Burma biodiversity hotspot, has many endemic animals and plants. Some of its fungal species are difficult to recognize and separate, complicating assessments of biodiversity. We assessed species diversity within the fungal genera Annulohypoxylon and Hypoxylon, which produce biologically active and potentially therapeutic compounds, by applying classical taxonomic methods to 552 teleomorphs collected from across Thailand. Using probability of correct identification (PCI, we also assessed the efficacy of automated species identification with a fungal barcode marker, ITS, in the model system of Annulohypoxylon and Hypoxylon. The 552 teleomorphs yielded 137 ITS sequences; in addition, we examined 128 GenBank ITS sequences, to assess biases in evaluating a DNA barcode with GenBank data. The use of multiple sequence alignment in a barcode database like BOLD raises some concerns about non-protein barcode markers like ITS, so we also compared species identification using different alignment methods. Our results suggest the following. (1 Multiple sequence alignment of ITS sequences is competitive with pairwise alignment when identifying species, so BOLD should be able to preserve its present bioinformatics workflow for species identification for ITS, and possibly therefore with at least some other non-protein barcode markers. (2 Automated species identification is insensitive to a specific choice of evolutionary distance, contributing to resolution of a current debate in DNA barcoding. (3 Statistical methods are available to address, at least partially, the possibility of expert misidentification of species. Phylogenetic trees discovered a cryptic species and strongly supported monophyletic clades for many Annulohypoxylon and Hypoxylon species, suggesting that ITS can contribute usefully to a barcode for these fungi. The PCIs here, derived solely from ITS, suggest that a fungal barcode will require secondary markers in

  9. Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera.

    Science.gov (United States)

    Suwannasai, Nuttika; Martín, María P; Phosri, Cherdchai; Sihanonth, Prakitsin; Whalley, Anthony J S; Spouge, John L

    2013-01-01

    Thailand, a part of the Indo-Burma biodiversity hotspot, has many endemic animals and plants. Some of its fungal species are difficult to recognize and separate, complicating assessments of biodiversity. We assessed species diversity within the fungal genera Annulohypoxylon and Hypoxylon, which produce biologically active and potentially therapeutic compounds, by applying classical taxonomic methods to 552 teleomorphs collected from across Thailand. Using probability of correct identification (PCI), we also assessed the efficacy of automated species identification with a fungal barcode marker, ITS, in the model system of Annulohypoxylon and Hypoxylon. The 552 teleomorphs yielded 137 ITS sequences; in addition, we examined 128 GenBank ITS sequences, to assess biases in evaluating a DNA barcode with GenBank data. The use of multiple sequence alignment in a barcode database like BOLD raises some concerns about non-protein barcode markers like ITS, so we also compared species identification using different alignment methods. Our results suggest the following. (1) Multiple sequence alignment of ITS sequences is competitive with pairwise alignment when identifying species, so BOLD should be able to preserve its present bioinformatics workflow for species identification for ITS, and possibly therefore with at least some other non-protein barcode markers. (2) Automated species identification is insensitive to a specific choice of evolutionary distance, contributing to resolution of a current debate in DNA barcoding. (3) Statistical methods are available to address, at least partially, the possibility of expert misidentification of species. Phylogenetic trees discovered a cryptic species and strongly supported monophyletic clades for many Annulohypoxylon and Hypoxylon species, suggesting that ITS can contribute usefully to a barcode for these fungi. The PCIs here, derived solely from ITS, suggest that a fungal barcode will require secondary markers in Annulohypoxylon and

  10. Geometric and morphometric analysis of fish scales to identity genera, species and populations case study: the Cyprinid family

    Directory of Open Access Journals (Sweden)

    Seyedeh Narjes Tabatabei

    2014-01-01

    Full Text Available Using fish scale to identity species and population is a rapid, safe and low cost method. Hence, this study was carried out to investigate the possibility of using geometric and morphometric methods in fish scales for rapid identification of species and populations and compare the efficiency of applying few and/or high number of landmark points. For this purpose, scales of one population of Luciobarbus capito, four populations of Alburnoides eichwaldii and two populations of Rutilus frisii kutum, all belonging to cyprinid family, were examined. On two-dimensional images of the scales 7 and 23 landmark points were digitized in two separate times using TpsDig2, respectively. Landmark data after generalized procrustes analysis were analyzed using Principal Component Analysis (PCA, Canonical Variate Analysis (CVA and Cluster Analysis. The results of both methods (using 7 and 23 landmark points showed significant differences of the shape of scales among the three species studied (P0.05. The results also showed that few number of landmarks could display the differences between scale shapes. According to the results of this study, it could be stated that the scale of each species had unique shape patterns which could be utilized as a species identification key.

  11. Color as related to Size, Sex, and Behavior in seven Caribbean Labrid Fish Species (genera Thalassoma, Halichoeres and Hemipteronotus)

    NARCIS (Netherlands)

    Roede, Machteld J.

    1972-01-01

    Approximately 5500 Caribbean labrid fishes belonging to seven species were caught, transported, partly on ice, to the laboratory and subsequently studied. The major portion was examined immediately; some 20 per cent were stored briefly (less than three days) at minus 20°C. Color pattern (and shape

  12. Voracious male spiders that kill adult females of their own species (genera Walckenaeria, Diplostyla, Neriene, Meta, Araneae)

    NARCIS (Netherlands)

    Heuts, B.; Brunt, T.

    2008-01-01

    In contrast to the popular belief that adult female spiders often kill and eat their adult male partners in the context of copulation, we present a few instances of adult male spiders killing and eating adult females of their own species in the laboratory. However, in line with the popular belief,

  13. Intraspecific venom variation in southern African scorpion species of the genera Parabuthus, Uroplectes and Opistophthalmus (Scorpiones: Buthidae, Scorpionidae).

    Science.gov (United States)

    Schaffrath, Stephan; Prendini, Lorenzo; Predel, Reinhard

    2018-03-15

    Scorpion venoms comprise cocktails of proteins, peptides, and other molecules used for immobilizing prey and deterring predators. The composition and efficacy of scorpion venoms appears to be taxon-specific due to a coevolutionary arms race with prey and predators that adapt at the molecular level. The taxon-specific components of scorpion venoms can be used as barcodes for species identification if the amount of intraspecific variation is low and the analytical method is fast, inexpensive and reliable. The present study assessed the extent of intraspecific variation in newly regenerated venom collected in the field from geographically separated populations of four southern African scorpion species: three buthids, Parabuthus granulatus (Ehrenberg, 1831), Uroplectes otjimbinguensis (Karsch, 1879), and Uroplectes planimanus (Karsch, 1879), and one scorpionid, Opistophthalmus carinatus (Peters, 1861). Although ion signal patterns were generally similar among venom samples of conspecific individuals from different populations, MALDI-TOF mass spectra in the mass range m/z 700-10,000 revealed only a few ion signals that were identical suggesting that species identification based on simple venom mass fingerprints (MFPs) will be more reliable if databases contain data from multiple populations. In general, hierarchical cluster analysis (HCA) of the ion signals in mass spectra was more reliable for species identification than counts of mass-identical substances in MFPs. The statistical approach revealed conclusive information about intraspecific diversity. In combination with a comprehensive database of MALDI-TOF mass spectra in reflectron mode, HCA may offer a method for rapid species identification based on venom MFPs. Copyright © 2018 Elsevier Ltd. All rights reserved.

  14. Comparative physical mapping of 18S rDNA in the karyotypes of six leafcutter ant species of the genera Atta and Acromyrmex (Formicidae: Myrmicinae).

    Science.gov (United States)

    Teixeira, Gisele Amaro; Barros, Luísa Antônia Campos; de Aguiar, Hilton Jeferson Alves Cardoso; das Graças Pompolo, Silvia

    2017-10-01

    Leafcutter ants of the Atta and Acromyrmex genera are important plagues in different cultures. Cytogenetic data on chromosome number, morphology, and chromosomal banding pattern are only available for 17 species of leafcutter ants. Molecular cytogenetic data for the detection of ribosomal genes by the FISH technique are scarce, and only 15 Neotropical ant species have been studied. This study aimed to physically map the 18S ribosomal RNA genes (rDNA) of six leafcutter ants belonging to the genera Atta and Acromyrmex using FISH. The results were compared with data on the fluorochrome CMA 3 currently available for these species. All analyzed species presented the 18S rDNA on one pair of chromosomes. In Acromyrmex subterraneus molestans and Ac. aspersus, FISH signals were observed in the terminal region of the short arm of the largest subtelocentric pair, while in Atta bisphaerica, A. laevigata, and A. sexdens, FISH signals were observed in the interstitial region of the long arm of the fourth metacentric pair. In Acromyrmex striatus, 18S rDNA was located in the interstitial region of the second metacentric pair. The karyotypic formula for Ac. aspersus was 2n = 38 (8m + 10sm + 16st + 4a), representing the first report in this species. The observed 18S rDNA regions in A. laevigata, A. sexdens, A. bisphaerica, Ac. aspersus, and Ac. subterraneus molestans corresponded to the CMA 3 + bands, while in Ac. striatus, several GC-rich bands and one pair of 18S rDNA bands were observed. No differential bands were visible using the DAPI fluorochrome. Karyotype uniformity with previously studied Atta spp. was also observed at the level of molecular cytogenetics using 18S rDNA FISH. A difference in the size of the chromosomal pair carrying the 18S rDNA gene was observed in Ac. striatus (2n = 22) and Atta spp. (2n = 22) highlighting the dissimilarity between these species. The results from the present study contribute to the description of 18S rDNA clusters

  15. Species richness of the genera Trachelomonas and Strombomonas (pigmented Euglenophyceae in a subtropical urban lake in the Porto Alegre Botanical Garden, RS, Brazil

    Directory of Open Access Journals (Sweden)

    Sandra Maria Alves-da-Silva

    2013-09-01

    Full Text Available The objective of this study was to evaluate the taxonomic composition and richness of the genera Trachelomonas and Strombomonas (pigmented Euglenophyceae in a subtropical urban lake (30º03'05"S; 51º10'34"W within the Botanical Garden, in the city of Porto Alegre, located in the state of Rio Grande do Sul, Brazil, in order to contribute to the floristic knowledge of Euglenophyta in artificial urban lakes. From July 2007 to June 2008, we collected samples monthly from two sampling stations, using a 25-µm mesh plankton net. The samples were preserved in 4% formaldehyde. We evaluated the following environmental variables related to the water in the lake: ammonia content, silica content, organic matter content, dissolved oxygen concentration, temperature, pH, depth, transparency, electrical conductivity and rainfall. To study the species composition in relation to environmental factors, we used cluster analysis, principal components analysis, canonical correspondence analysis and indicator species analysis. At the specific and infraspecific level, 22 taxa were identified, Trachelomonas elliptica (Playf. Defl. and T. gracillima Bal. & Dast. representing new records for the state of Rio Grande do Sul. The cluster analysis indicated seasonal variation, species richness being highest in the spring of 2007. Seven indicator species were characterized as acid-tolerant.

  16. Molecular phylogenies confirm the presence of two cryptic Hemimycale species in the Mediterranean and reveal the polyphyly of the genera Crella and Hemimycale (Demospongiae: Poecilosclerida

    Directory of Open Access Journals (Sweden)

    Maria J. Uriz

    2017-03-01

    Atlanto-Mediterranean Hemimycale also suggest that Hemimycale arabica fit in a separate genus. On the other hand, the Atlanto-Mediterranean Crellidae appeared in 18S and 28S phylogenies as a sister group of the Atlanto-Mediterranean Hemimycale. Moreover, what was known up to now as Hemimycale columella, is formed by two cryptic species with contrasting bathymetric distributions. Some small but consistent morphological differences allow species distinction. Conclusions A new family (Hemimycalidae including the genus Hemimycale and the two purported new genera receiving C. cyathophora and Hemimycale arabica might be proposed according to our phylogenetic results. However, the inclusion of additional Operational Taxonomic Unit (OTUs appears convenient before taking definite taxonomical decisions. A new cryptic species (Hemimycale mediterranea sp. nov. is described. Morphologically undifferentiated species with contrasting biological traits, as those here reported, confirm that unidentified cryptic species may confound ecological studies.

  17. Scientific Opinion on the phytosanitary risk associated with some coniferous species and genera for the spread of pine wood nematode

    DEFF Research Database (Denmark)

    Baker, R.; Candresse, T.; Dormannsné Simon, E.

    2012-01-01

    plants or untreated plant products or by supporting natural spread of PWN in conjunction with European species of the vector. The Panel analysed the data submitted by Portugal regarding surveys on the Tróia Peninsula where P. pinaster and P. pinea co-occur, and the related laboratory results of Naves et...... al. (2006) on feeding and oviposition preferences of Monochamus galloprovincialis. The Panel also undertook a comprehensive review of the literature. The zero infestation of PWN recorded on P. pinea on the Tróia Peninsula was not significantly different from the result for P. pinaster, because...... of the small P. pinea sample. Hence, the conclusion that P. pinea is not a host plant for PWN is not supported by the data submitted, principally because of low statistical confidence arising from the few P. pinea trees present. Moreover, the limited presence of P. pinea in the study areas means...

  18. LegumeDB1 bioinformatics resource: comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species.

    Science.gov (United States)

    Moolhuijzen, P; Cakir, M; Hunter, A; Schibeci, D; Macgregor, A; Smith, C; Francki, M; Jones, M G K; Appels, R; Bellgard, M

    2006-06-01

    The identification of markers in legume pasture crops, which can be associated with traits such as protein and lipid production, disease resistance, and reduced pod shattering, is generally accepted as an important strategy for improving the agronomic performance of these crops. It has been demonstrated that many quantitative trait loci (QTLs) identified in one species can be found in other plant species. Detailed legume comparative genomic analyses can characterize the genome organization between model legume species (e.g., Medicago truncatula, Lotus japonicus) and economically important crops such as soybean (Glycine max), pea (Pisum sativum), chickpea (Cicer arietinum), and lupin (Lupinus angustifolius), thereby identifying candidate gene markers that can be used to track QTLs in lupin and pasture legume breeding. LegumeDB is a Web-based bioinformatics resource for legume researchers. LegumeDB analysis of Medicago truncatula expressed sequence tags (ESTs) has identified novel simple sequence repeat (SSR) markers (16 tested), some of which have been putatively linked to symbiosome membrane proteins in root nodules and cell-wall proteins important in plant-pathogen defence mechanisms. These novel markers by preliminary PCR assays have been detected in Medicago truncatula and detected in at least one other legume species, Lotus japonicus, Glycine max, Cicer arietinum, and (or) Lupinus angustifolius (15/16 tested). Ongoing research has validated some of these markers to map them in a range of legume species that can then be used to compile composite genetic and physical maps. In this paper, we outline the features and capabilities of LegumeDB as an interactive application that provides legume genetic and physical comparative maps, and the efficient feature identification and annotation of the vast tracks of model legume sequences for convenient data integration and visualization. LegumeDB has been used to identify potential novel cross-genera polymorphic legume

  19. Generation of amphidiploids from hybrids of wheat and related species from the genera Aegilops, Secale, Thinopyrum, and Triticum as a source of genetic variation for wheat improvement.

    Science.gov (United States)

    Nemeth, Csilla; Yang, Cai-yun; Kasprzak, Paul; Hubbart, Stella; Scholefield, Duncan; Mehra, Surbhi; Skipper, Emma; King, Ian; King, Julie

    2015-02-01

    We aim to improve diversity of domesticated wheat by transferring genetic variation for important target traits from related wild and cultivated grass species. The present study describes the development of F1 hybrids between wheat and related species from the genera Aegilops, Secale, Thinopyrum, and Triticum and production of new amphidiploids. Amphidiploid lines were produced from 20 different distant relatives. Both colchicine and caffeine were successfully used to double the chromosome numbers. The genomic constitution of the newly formed amphidiploids derived from seven distant relatives was determined using genomic in situ hybridization (GISH). Altogether, 42 different plants were analysed, 19 using multicolour GISH separating the chromosomes from the A, B, and D genomes of wheat, as well as the distant relative, and 23 using single colour GISH. Restructuring of the allopolyploid genome, both chromosome losses and aneuploidy, was detected in all the genomes contained by the amphidiploids. From the observed chromosome numbers there is an indication that in amphidiploids the B genome of wheat suffers chromosome losses less frequently than the other wheat genomes. Phenotyping to realize the full potential of the wheat-related grass germplasm is underway, linking the analyzed genotypes to agronomically important target traits.

  20. Five new species of the genera Heerz Marsh, Lissopsius Marsh and Ondigus Braet, Barbalho and van Achterberg (Braconidae, Doryctinae) from the Chamela-Cuixmala biosphere reserve in Jalisco, Mexico

    Science.gov (United States)

    Zaldívar-Riverón, Alejandro; Martínez, Juan José; Ceccarelli, Fadia Sara; Shaw, Scott R.

    2012-01-01

    Abstract Five new species belonging to the poorly known Neotropical doryctine parasitoid wasps genera Heerz Marsh (Heerz ecmahla sp. n. and Heerz macrophthalma sp. n.), Lissopsius Marsh (Lissopsius pacificus sp. n. and Lissopsius jalisciensis sp. n.) and Ondigus Braet, Barbalho & van Achterberg (Ondigus cuixmalensis sp. n.) are described from the Chamela-Cuixmala Biosphere reserve in Jalisco, Mexico. Keys to the described species of the above three genera are provided. The phylogenetic placement of the examined taxa is investigated based on mitochondrial (COI) and nuclear (28S, 2nd and 3rd domain regions) DNA sequence data. PMID:22328849

  1. Indo-Pacific coral species belonging to the subfamily Montastreinae Vaughan & Wells, 1943 (Scleractinea-Coelenterata) Part II. The genera Cyphastrea, Leptastrea, Echinopora and Diploastrea

    NARCIS (Netherlands)

    Wijsman-Best, M.

    1980-01-01

    INTRODUCTION In the first part of the study on the Montastreinae (Wijsman-Best, 1977) I have dealt with the genera Montrastrea and Plesiastrea on the basis of material from a wide range of localities in the Indo-Pacific ocean. In the present paper dealing with the remaining genera of the

  2. Suitability of dried herbarium specimens for NMR metabolomics of mushrooms. A comparison of four species of the genera Kuehneromyces and Hypholoma (Strophariaceae).

    Science.gov (United States)

    Jafari, Tahereh; Alanne, Aino-Liisa; Issakainen, Jouni; Pihlaja, Kati; Sinkkonen, Jari

    Herbarium specimens are a treasure trove for biochemical studies. However, this implies understanding of the chemical changes during the drying and storage of the specimen. We compared herbarium specimens at different ages and fresh samples of four mushroom species (Kuehneromyces mutabilis, Hypholoma capnoides, Kuehneromyces lignicola, Hypholoma fasciculare) of two genera in the family Strophariaceae by using proton nuclear magnetic resonance ( 1 H NMR) spectroscopy combined with principal component analysis (PCA). 25 metabolites were identified. No significant alterations were found between herbarium samples at different ages, suggesting that they are stable enough for comparative studies. The most dominant differences between fresh and herbarium samples was that sugars such as α-α-trehalose, and fumaric and malic acids were more abundant in fresh fungi. Total contents of fatty and amino acids, uracil and γ-aminobutyric acid (GABA) were higher in herbarium specimens. In addition, pyroglutamic acid was observed only in Kuehneromyces mutabilis and fasciculic acid E in Hypholomafasciculare. Hence, based on results of the studied taxa, we conclude that NMR metabolomics can be used for both fresh and dried mushrooms when such alterations are properly addressed. Copyright © 2017 British Mycological Society. Published by Elsevier Ltd. All rights reserved.

  3. Limnephilid taxa revised by speciation traits: Rhadicoleptus, Isogamus, Melampophylax genera, Chaetopteryx rugulosa, Psilopteryx psorosa species groups, Drusus bolivari, Annitella kosciuszkii species complexes (Trichoptera: Limnephilidae

    Directory of Open Access Journals (Sweden)

    Oláh, J.

    2015-06-01

    Full Text Available Speciation traits of paramere, paraproct and aedeagus were applied to find initial split criteria with fine structure analysis in order to prepare diverged trait matrices for delimiting phylogenetic incipient species of unsettled limnephilid taxa in the early stages of reproductive isolation. A brief history is presented how this phenotypic taxonomic tool of the speciation traits was discovered and applied in caddisfly taxonomy. The theoretical basis was elaborated for the phenotypic speciation trait by reviewing several relevant topics in the sciences of taxonomy, molecular genetics and phylogenetics. Perspectives of integrative taxonomy is discussed in context of phenotype versus genotype, immensely complex phenotype versus phenomic challenge, taxonomic impediment versus genetic expedient, taxonomic adaptation of genetic vocabulary versus genetic sophistication and virtualization, New Systematics of Huxley and Mayr versus New Taxonomy of Wheeler. Debates on magic trait, speciation phenotype, speciation trait and super traits are discussed concluding that evolution works with phenotype and why the cryptic species concept is irrelevant. Briefly summarized how speciation traits evolve in sexual selection, through accelerated reproductive isolation with genital evolution through sex-limited speciation traits, including minor sex chromosomes. Why neutral molecular markers are blind compared to the adaptive speciation traits sensitized by fine structure analysis and backed by the potential of high-tech and high-throughput phenotyping and cyber-infrastructure broadly accessible and fed by computable phenotype descriptions. What sort of genetics could really help taxonomy to describe biodiversity of the over 100 million unknown taxa? Collecting new and re-examining old type materials deposited in various collections, the following taxonomic actions were elaborated by speciation traits. Drusus bolivari new species complex has been erected with

  4. Development, cross-species/genera transferability of novel EST-SSR markers and their utility in revealing population structure and genetic diversity in sugarcane

    KAUST Repository

    Singh, Ram K.

    2013-07-01

    Sugarcane (Saccharum spp. hybrid) with complex polyploid genome requires a large number of informative DNA markers for various applications in genetics and breeding. Despite the great advances in genomic technology, it is observed in several crop species, especially in sugarcane, the availability of molecular tools such as microsatellite markers are limited. Now-a-days EST-SSR markers are preferred to genomic SSR (gSSR) as they represent only the functional part of the genome, which can be easily associated with desired trait. The present study was taken up with a new set of 351 EST-SSRs developed from the 4085 non redundant EST sequences of two Indian sugarcane cultivars. Among these EST-SSRs, TNR containing motifs were predominant with a frequency of 51.6%. Thirty percent EST-SSRs showed homology with annotated protein. A high frequency of SSRs was found in the 5\\'UTR and in the ORF (about 27%) and a low frequency was observed in the 3\\'UTR (about 8%). Two hundred twenty-seven EST-SSRs were evaluated, in sugarcane, allied genera of sugarcane and cereals, and 134 of these have revealed polymorphism with a range of PIC value 0.12 to 0.99. The cross transferability rate ranged from 87.0% to 93.4% in Saccharum complex, 80.0% to 87.0% in allied genera, and 76.0% to 80.0% in cereals. Cloning and sequencing of EST-SSR size variant amplicons revealed that the variation in the number of repeat-units was the main source of EST-SSR fragment polymorphism. When 124 sugarcane accessions were analyzed for population structure using model-based approach, seven genetically distinct groups or admixtures thereof were observed in sugarcane. Results of principal coordinate analysis or UPGMA to evaluate genetic relationships delineated also the 124 accessions into seven groups. Thus, a high level of polymorphism adequate genetic diversity and population structure assayed with the EST-SSR markers not only suggested their utility in various applications in genetics and genomics in

  5. Termites in the hominin diet: a meta-analysis of termite genera, species and castes as a dietary supplement for South African robust australopithecines.

    Science.gov (United States)

    Lesnik, Julie J

    2014-06-01

    Termite foraging by chimpanzees and present-day modern humans is a well-documented phenomenon, making it a plausible hypothesis that early hominins were also utilizing this resource. Hominin termite foraging has been credited by some to be the explanation for the unexpected carbon isotope signatures present in South African hominin teeth, which suggest the diet was different from that of extant non-human great apes, consisting of a significant amount of resources that are not from woody-plants. Grass-eating termites are one potential resource that could contribute to the carbon signature. However, not all termites eat grasses, and in fact, the termites that are most widely consumed by chimpanzees and by many present-day human populations at best have a mixed diet that includes small amounts of grasses. Here I review the ecology of termites and how it affects their desirability as a food resource for hominins, and conduct a meta-analysis of nutritional values for various genera, species and castes from the literature. Termites are very diverse, even within species, and this variability affects both their carbon signatures and nutritional value, hindering generalizations regarding the contribution of termites to the hominin diet. It is concluded here that a combination of soldiers and alates of the genus Macrotermes be used to model the insectivory component of the Plio-Pleistocene hominin diet due to their significant amounts of energy-yielding nutrients and potential role as a critical resource for supporting larger-brained hominins. Copyright © 2014. Published by Elsevier Ltd.

  6. Genera of phytopathogenic fungi

    NARCIS (Netherlands)

    Marin-Felix, Y.; Hernández-Restrepo, Margarita; Wingfield, M.J.; Akulov, A.; Carnegie, A.J.; Cheewangkoon, R.; Gramaje, D.; Groenewald, J.Z.; Guarnaccia, V.; Halleen, F.; Lombard, L.; Luangsa-ard, J.; Marincowitz, S.; Moslemi, A.; Mostert, L.; Quaedvlieg, W.; Schumacher, R.K.; Spies, C.F.J.; Thangavel, R.; Taylor, P.W.J.; Wilson, A.M.; Wingfield, B.D.; Wood, A.R.; Crous, P.W.

    2019-01-01

    This paper represents the second contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information regarding the pathology, distribution, hosts and disease symptoms for the treated genera. In addition, primary and secondary DNA

  7. How many genera and species of woolly monkeys (Atelidae, Platyrrhine, Primates) are there? The first molecular analysis of Lagothrix flavicauda, an endemic Peruvian primate species.

    Science.gov (United States)

    Ruiz-García, Manuel; Pinedo-Castro, Myreya; Shostell, Joseph Mark

    2014-10-01

    We sequenced COI and COII mitochondrial genes of 141 Neotropical woolly monkeys to provide new insights concerning their phylogeography and phylogenetic relationships. For the first time, eight individuals of the endemic and extremely rare Peruvian yellow-tailed woolly monkey (flavicauda) were sequenced at these genes and compared with other Lagothrix taxa (poeppigii, lagotricha, lugens and cana). There were four main results. (1) L. flavicauda showed a gene diversity of zero, whereas poeppigii and lugens showed high levels of gene diversity and lagotricha and cana showed more modest levels of gene diversity. The absence of gene diversity found for L. flavicauda strongly supports that it is one of the 25 more endangered primates on earth; (2) Our genetic distance and phylogenetic analyses, which included many cases of genetic introgression and recent hybridization, suggest that all woolly monkeys could be included in one unique genus, Lagotrix, divided into two species: L. flavicauda and L. lagotricha. The last species is divided into at least four subspecies. Our molecular results agree with Fooden's (1963) classification, but do not support the classification proposed by Groves (2001). (3) Poeppigii was the first taxon within L. lagotricha to experience a mitochondrial haplotype diversification, while cana and lagotricha experienced more recent mitochondrial haplotype diversification; (4) Poeppigii and lagotricha were the taxa which showed the greatest evidence of population expansions in different Pleistocene periods, whereas lugens experienced a population declination in the last 25,000 YA. Copyright © 2014 Elsevier Inc. All rights reserved.

  8. Molecular phylogenetics, diversification, and systematics of Tibicen Latreille 1825 and allied cicadas of the tribe Cryptotympanini, with three new genera and emphasis on species from the USA and Canada(Hemiptera: Auchenorrhyncha: Cicadidae).

    Science.gov (United States)

    Hill, Kathy B R; Marshall, David C; Moulds, Maxwell S; Simon, Chris

    2015-07-10

    North America has a diverse cicada fauna with multiple genera from all three Cicadidae subfamilies, yet molecular phylogenetic analyses have been completed only for the well-studied periodical cicadas (Magicicada Davis). The genus Tibicen Latreille, a large group of charismatic species, is in need of such work because morphological patterns suggest multiple groups with complicated relationships to other genera in the tribe Cryptotympanini. In this paper we present a molecular phylogenetic analysis, based on mitochondrial and nuclear DNA, of 35 of the 38 extant USA species and subspecies of the genus Tibicen together with their North American tribal allies (Cornuplura Davis, Cacama Davis), selected Tibicen species from Eurasia, and representatives of other Eurasian and Pacific cryptotympanine genera. This tree shows that Tibicen contains several well-supported clades, one predominating in eastern and central North America and related to Cryptotympana Stål and Raiateana Boulard, another in western North America related to Cacama and Cornuplura, and at least two clades in Eurasia. We also present a morphological cladistic analysis of Tibicen and its close allies based on 27 characters. Character states identified in the cladistic analysis define three new genera, two for North American taxa (Hadoa gen. n. and Neotibicen gen. n.) including several Mexican species, and one for Asian species (Subsolanus gen. n.). Using relaxed molecular clocks and literature-derived mtDNA rate estimates, we estimate the timeframe of diversification of Tibicen clades and find that intergeneric divergence has occurred since the late Eocene, with most extant species within the former Tibicen originating after the mid-Miocene. We review patterns of ecology, behavior, and geography among Tibicen clades in light of the phylogenetic results and note that the study of these insects is still in its early stages. Some Mexican species formerly placed in Tibicen are here transferred to Diceroprocta

  9. Revision of the Agathidinae (Hymenoptera, Braconidae) of Vietnam, with the description of forty-two new species and three new genera

    Science.gov (United States)

    van Achterberg, Cornelis; Long, Khuat Dang

    2010-01-01

    Abstract The species of seventeen genera of Agathidinae (Braconidae) from Vietnam are revised: Agathis Latreille, 1804, Bassus Fabricius, 1804; Biroia Szépligeti, 1900; Braunsia Kriechbaumer, 1894; Camptothlipsis Enderlein, 1920; Coccygidium de Saussure, 1892; Coronagathis gen. n. (type species: Coronagathis cornifera sp. n.); Cremnops Foerster, 1862; Disophrys Foerster, 1862; Earinus Wesmael, 1837; Euagathis Szépligeti, 1900; Gyragathis gen. n. (type species: Gyragathis quyi sp. n.), Gyrochus Enderlein, 1920; Lytopylus Foerster, 1862; Therophilus Wesmael, 1837; Troticus Brullé, 1846, and Zelodia gen. n. (type species: Zelomorpha varipes van Achterberg & Maetô, 1990). Keys to the Vietnamese species are given. Sixty-five species are recognised, of which twelve species are newly recorded for Vietnam: Bassus albifasciatus (Watanabe, 1934), Coccygidium angostura (Bhat & Gupta, 1977), Cremnops atricornis (Smith, 1874), stat. n., Disophrys erythrocephala Cameron, 1900, Gyrochus yunnanensis Wang, 1984, Lytopylus romani (Shestakov, 1940), comb. n., Therophilus festivus (Muesebeck, 1953), comb. n., Therophilus javanus (Bhat & Gupta, 1977), comb. n., Therophilus lienhuachihensis (Chou & Sharkey, 1989), comb. n., Therophilus marshi (Bhat & Gupta, 1977), comb. n., Zelodia absoluta (Chen & Yang, 1998), comb. n. and Zelodia longidorsata (Bhat & Gupta, 1977), comb. n. Forty-two species are new to science: Agathis citrinisoma sp. n., Bassus albobasalis sp. n., Bassus albozonatus sp. n., Biroia soror sp. n., Braunsia bicolorata sp. n., Braunsia devriesi sp. n., Braunsia maculifera sp. n., Braunsia nigrapiculata sp. n., Braunsia pumatica sp. n., Camptothlipsis hanoiensis sp. n., Coronagathis cornifera sp. n., Earinus aurantius sp. n., Earinus brevistigmus sp. n., Euagathis flavosoma sp. n., Disophrys maculifera sp. n., Disophrys quymanhi sp. n., Disophrys rhinoides sp. n., Gyragathis quyi sp. n., Therophilus annuliferus sp. n., Therophilus cattienensis sp. n., Therophilus

  10. The Heteromurini Absolon & Ksenemann (Collembola, Entomobryidae): a review of the genera status and diagnoses, keys for species of Alloscopus Börner and Heteromurtrella Mari Mutt and description of a new species.

    Science.gov (United States)

    Cipola, Nikolas Gioia; Oliveira, Fabio Gonçalves De Lima; Morais, José Wellington De; Bellini, Bruno Cavalcante

    2016-02-25

    The status of Heteromurini Absolon & Ksenemann is analyzed and a new diagnosis is proposed to the tribe. New chaetotaxic characteres were added to distinguish Dicranocentrus Schött and Pseudodicranocentrus Mari Mutt. Alloscopus Börner, Heteromurtrella Mari Mutt and Verhoeffiella Absolon, originally proposed as subgenera of Heteromurus Wankel, are reviewed and a new diagnosis and generic status are proposed. The presence of the postantennal organ becomes the main characteristic to distinguish Alloscopus (present) and Heteromurtrella (absent). Alloscopus yosiius Mari Mutt, anteriorly synonymized with Alloscopus tenuicornis Börner, is revalidated. The absence of S0 macrochaeta on head of Heteromurus is reported now as a characteristic also shared with Heteromurtrella. Heteromurtrella zairensis Tshelnokov comb. nov. is transferred from Heteromurus by the presence of macrochaetae on abdomen I. Heteromurtrella anae sp. nov. from Brazilian Amazon is described and illustrated, including detailed dorsal chaetotaxy. This is the first record of Heteromurtrella in Brazil. Heteromurus now has 17, Alloscopus 10 and Heteromurtrella 20 valid species worldwide. An identification key and diagnosis for the six genera of Heteromurini and species of Alloscopus and Heteromurtrella are provided.

  11. Zygospore ornamentation in the genera Mucor and Zygorhynchus

    NARCIS (Netherlands)

    Schipper, Maria A.A.; Samson, R.A.; Stalpers, J.A.

    1975-01-01

    Zygospores of species of the genera Mucor and Zygorhynchus were studied by means of scanning electron microscopy. The types of ornamentation are described and compared with those of some species of other genera of the Mucorales. The possibility of grouping the species according to zygospore

  12. Genera of phytopathogenic fungi: GOPHY 1

    Directory of Open Access Journals (Sweden)

    Y. Marin-Felix

    2017-03-01

    Full Text Available Genera of Phytopathogenic Fungi (GOPHY is introduced as a new series of publications in order to provide a stable platform for the taxonomy of phytopathogenic fungi. This first paper focuses on 21 genera of phytopathogenic fungi: Bipolaris, Boeremia, Calonectria, Ceratocystis, Cladosporium, Colletotrichum, Coniella, Curvularia, Monilinia, Neofabraea, Neofusicoccum, Pilidium, Pleiochaeta, Plenodomus, Protostegia, Pseudopyricularia, Puccinia, Saccharata, Thyrostroma, Venturia and Wilsonomyces. For each genus, a morphological description and information about its pathology, distribution, hosts and disease symptoms are provided. In addition, this information is linked to primary and secondary DNA barcodes of the presently accepted species, and relevant literature. Moreover, several novelties are introduced, i.e. new genera, species and combinations, and neo-, lecto- and epitypes designated to provide a stable taxonomy. This first paper includes one new genus, 26 new species, ten new combinations, and four typifications of older names.

  13. Annotations on the genera Triscolia, Megascolia and Scolia (Hymenoptera, Scoliidae)

    NARCIS (Netherlands)

    Betrem, J.G.; Chester Bradley, J.

    1964-01-01

    This communication has been divided in three sections. Section A deals with the types of some taxa belonging to the genera Triscolia, Megascolia and Scolia; section B deals with the species of the genera Triscolia and Megascolia; a third section dealing with the species of the genus Scolia will be

  14. Six new genera of Braconidae (Hymenoptera) from China

    NARCIS (Netherlands)

    Achterberg, van C.; Chen, X.

    2004-01-01

    Six new genera of the family Braconidae (Hymenoptera) from China are described and illustrated: two genera of the subfamily Agathidinae: Facilagathis gen. nov. (type species: F. spinulata spec. nov.) and Cremnoptoides gen. nov. (type species: Cremnops pappi Sharkey, 1994); one genus of the subfamily

  15. DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation

    NARCIS (Netherlands)

    Vu, D; Groenewald, M; Szöke, S; Cardinali, G; Eberhardt, U; Stielow, B; de Vries, M; Verkleij, G J M; Crous, P W; Boekhout, T; Robert, V

    DNA barcoding is a global initiative for species identification through sequencing of short DNA sequence markers. Sequences of two loci, ITS and LSU, were generated as barcode data for all (ca. 9k) yeast strains included in the CBS collection, originally assigned to ca. 2 000 species. Taxonomic

  16. New genera and species of gall midges (Diptera, Cecidomyiidae associated with Guarea macrophylla (Meliaceae Novos gêneros e espécies de mosquitos galhadores (Diptera, Cecidomyiidae associados com Guarea macrophylla (Meliaceae

    Directory of Open Access Journals (Sweden)

    Valéria Cid Maia

    2007-06-01

    Full Text Available Three distinct leaf galls are recorded on Guarea macrophylla (Meliaceae. The galling species were identified as Neolasioptera sp., Guareamyia purpura gen. nov. and sp. nov.; Sphaeramyia flava gen. nov. and sp.nov. The new genera and species are described and illustrated based on material collected at restinga areas in Bertioga (São Paulo, Brazil.Três galhas foliares distintas são registradas em Guarea macrophylla (Meliaceae. As espécies galhadoras foram identificadas como Neolasioptera sp., Guareamyia purpura gen. nov. e sp. nov..; Sphaeramyia flava gen. nov. e sp. nov. Os gêneros e espécies novas são descritos e ilustrados com base em material coletado em áreas de restinga em Bertioga (São Paulo, Brasil.

  17. Redefining Ceratocystis and allied genera

    Science.gov (United States)

    de Beer, Z.W.; Duong, T.A.; Barnes, I.; Wingfield, B.D.; Wingfield, M.J.

    2014-01-01

    The genus Ceratocystis was established in 1890 and accommodates many important fungi. These include serious plant pathogens, significant insect symbionts and agents of timber degradation that result in substantial economic losses. Virtually since its type was described from sweet potatoes, the taxonomy of Ceratocystis has been confused and vigorously debated. In recent years, particulary during the last two decades, it has become very obvious that this genus includes a wide diversity of very different fungi. These have been roughly lumped together due to their similar morphological structures that have clearly evolved through convergent evolution linked to an insect-associated ecology. As has been true for many other groups of fungi, the emergence of DNA-based sequence data and associated phylogenetic inferences, have made it possible to robustly support very distinct boundaries defined by morphological characters and ecological differences. In this study, DNA-sequence data for three carefully selected gene regions (60S, LSU, MCM7) were generated for 79 species residing in the aggregate genus Ceratocystis sensu lato and these data were subjected to rigorous phylogenetic analyses. The results made it possible to distinguish seven major groups for which generic names have been chosen and descriptions either provided or emended. The emended genera included Ceratocystis sensu stricto, Chalaropsis, Endoconidiophora, Thielaviopsis, and Ambrosiella, while two new genera, Davidsoniella and Huntiella, were described. In total, 30 new combinations have been made. This major revision of the generic boundaries in the Ceratocystidaceae will simplify future treatments and work with an important group of fungi including distantly related species illogically aggregated under a single name. PMID:25492989

  18. A new species of the deep-sea spongicolid genus Spongicoloides (Crustacea, Decapoda, Stenopodidea) and a new species of the glass sponge genus Corbitella (Hexactinellida, Lyssacinosida, Euplectellidae) from a seamount near the Mariana Trench, with a novel commensal relationship between the two genera

    Science.gov (United States)

    Kou, Qi; Gong, Lin; Li, Xinzheng

    2018-05-01

    A new species of the deep-sea spongicolid genus Spongicoloides Hansen, 1908 and a new species of the euplectellid genus Corbitella Gray, 1867 are described and illustrated based on the material recently collected by the remotely operated vehicle 'Faxian' at a seamount near the Mariana Trench. The new deep-sea spongicolid species can be distinguished from the congeneric species by a series of morphological features and the validity of the new species was supported by the molecular phylogenetic analysis. By means of the microscleres of regular hexasters and onychohexasters, the new sponge species can easily be distinguished from other Corbitella species. The new euplectellid sponge species is the host of the new spongicolid shrimp species: this is the first discovery of an association between Spongicoloides and Corbitella. The present study increases the species diversity of both genera as well as yielding new insight into the commensal relationships between spongicolid shrimps and their sponge hosts.

  19. Molecular phylogeny of Trametes and related genera based on ...

    African Journals Online (AJOL)

    use

    2011-12-12

    Dec 12, 2011 ... Some species of Trametes and their related genera are so similar in microstructure characteristics that it is ... We found that both the conserved domains and the variable domains all ..... closely-related species was similar.

  20. New deep-sea free-living marine nematodes from the Sea of Japan: the genera Siphonolaimus and Halichoanolaimus (Nematoda: Chromadorea) with keys to species identifications.

    Science.gov (United States)

    Zograf, Julia; Trebukhova, Yulia; Pavlyuk, Olga

    2015-01-16

    In deep-sea sediments from the Sea of Japan, two new species, Halichoanolaimus brandtae sp. n. and Siphonolaimus japonicus sp. n., were found and described. Siphonolaimus japonicus sp. n. is characterized by having short anterior sensillae, body length of 3670-4500 μm, buccal cavity with axial spear, and length of the spicules. Halichoanolaimus brandtae sp.n is characterized by the number of amphideal rings, long spicules, five precloacal supplements and by having a long cylindrical part of the tail. Keys to species level are provided. 

  1. When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus

    NARCIS (Netherlands)

    Arrigoni, R.; Benzoni Danwei Huang, Hironobu Fukami, Chaolun Allen Chen, Michael L. Berumen, Mia Hoogenboom, Damian P. Thomson, Bert W. Hoeksema, Ann F. Budd, Yuna Zayasu, Tullia I. Terraneo, Yuko F. Kitano, Andrew H. Baird F.; Huang, D.; Fukami, H.; Chen, C.A.; Berumen, M.L.; Hoogenboom, M.; Thomson, D.P.; Hoeksema, B.W.; Budd, A.F.; Zayasu, Y.; Terraneo, T.I.; Kitano, Y.F.; Baird, A.H.

    2016-01-01

    The scleractinian family Lobophylliidae is undergoing a major taxonomic revision thanks to the combination of molecular and morphological data. In this study, we investigate the evolutionary relationships and the macro- and micromorphology of six nominal coral species belonging to two of the nine

  2. Corallovexiidae, a new family of transformed copepods endoparasitic in reef corals with two new genera and ten new species from Curaçao

    NARCIS (Netherlands)

    Stock, Jan H.

    1975-01-01

    Quite a few endoparasitic copepods are known from Indo-Pacific stony corals, but not a single species has so far been recorded from the West Indies. Intensive search in the past few decades has even supported the prevailing opinion that West Indian stony corals are devoid of endoparasitic copepods,

  3. Tinggianthura alba: a new genus and species of Anthuridae (Isopoda, Cymothoida, Anthuroidea) from Pulau Tinggi, Johor, Malaysia with an updated key to the genera of Anthuridae.

    Science.gov (United States)

    Chew, Melvin; Abdul Rahim, Azman; bin Haji Ross, Othman

    2014-01-01

    A new anthurid isopod from dead coral rubble and stones in the intertidal area of Pulau Tinggi, Johor, Malaysia, is described. It is placed in a new genus and species, Tinggianthura alba. Tinggianthura is characterized by: (1) subtriangular carpus shape of pereopods 4-7, (2) pereopod 1 propodus palm without prominent tooth or steps and (3) maxillipedal palp 2-articled.

  4. Review of Cyrtomyia Bigot (Diptera, BomByliidae, Ecliminae with a key to the Neotropical genera of Ecliminae and Cyrtomyia species

    Directory of Open Access Journals (Sweden)

    Carlos José Einicker Lamas

    2013-01-01

    Full Text Available The Neotropical genus Cyrtomyia Bigot has a distribution restricted to the Andean region of South America, with records only in Argentina and Chile. The genus is composed by two species, which are reviewed and redescribed herein: C. chilensis Paramonov, 1931 and C. pictipennis (Bigot, 1857. The main characters of the external morphology of adults are photographed. Illustrations of the male and female terminalia of C. chilensis are also included. An identification key to species is presented, and the species distribution is briefly discussed.O gênero Neotropical Cyrtomyia Bigot tem uma distribuição restrita à região Andina da América do Sul, com registros assinalados apenas para a Argentina e Chile. O gênero é composto por duas espécies, que são aqui revisadas e redescritas: C. chilensis Paramonov, 1931 e C. pictipennis (Bigot, 1857. Os principais caracteres da morfologia externa dos adultos estão fotografados. Ilustrações das terminálias de machos e de fêmeas de C. chilensis também são incluídas. Uma chave de identificação para as espécies é apresentada e a distribuição das espécies é brevemente discutida.

  5. two genera of myrtaceae

    Indian Academy of Sciences (India)

    The present paper deals with the sclereids of three species of Syzygium, S. cumini, Linn. Skeels., S. nodosum. Miq., and S. cinereum Wall, and in Eucalyptus tereticornis Sm. Austral. Metcalfe and Chalk (1950) have already drawn attention to the occurrence of stone-cells in the pith and cortex of the stems of some species of ...

  6. Algicidal Effects of a Novel Marine Pseudoalteromonas Isolate (Class Proteobacteria, Gamma Subdivision) on Harmful Algal Bloom Species of the Genera Chattonella, Gymnodinium, and Heterosigma

    Science.gov (United States)

    Lovejoy, Connie; Bowman, John P.; Hallegraeff, Gustaaf M.

    1998-01-01

    During a bacterial survey of the Huon Estuary in southern Tasmania, Australia, we isolated a yellow-pigmented Pseudoalteromonas strain (class Proteobacteria, gamma subdivision), designated strain Y, that had potent algicidal effects on harmful algal bloom species. This organism was identified by 16S rRNA sequencing as a strain with close affinities to Pseudoalteromonas peptidysin. This bacterium caused rapid cell lysis and death (within 3 h) of gymnodinoids (including Gymnodinium catenatum) and raphidophytes (Chattonella marina and Heterosigma akashiwo). It caused ecdysis of armored dinoflagellates (e.g., Alexandrium catenella, Alexandrium minutum, and Prorocentrum mexicanum), but the algal cultures then recovered over the subsequent 24 h. Strain Y had no effect on a cryptomonad (Chroomonas sp.), a diatom (Skeletonema sp.), a cyanobacterium (Oscillatoria sp.), and two aplastidic protozoans. The algicidal principle of strain Y was excreted into the seawater medium and lost its efficacy after heating. Another common bacterial species, Pseudoalteromonas carrageenovora, was isolated at the same time and did not have these algicidal effects. The minimum concentrations of strain Y required to kill G. catenatum were higher than the mean concentrations found in nature under nonbloom conditions. However, the new bacterium showed a chemotactic, swarming behavior that resulted in localized high concentrations around target organisms. These observations imply that certain bacteria could play an important role in regulating the onset and development of harmful algal blooms. PMID:9687434

  7. Two new species of free-living nematodes genera Microlaimus de Man, 1880 and Aponema Jensen, 1978 (Nematoda: Microlaimidae) from the Black Sea.

    Science.gov (United States)

    Revkova, Tatiana N

    2017-11-07

    Two new species of the family Microlaimidae Micoletzky, 1922 are described and illustrated from the Black Sea. Aponema pontica sp. n. is morphologically closest to A. torosum in the shape of the body and spicules, size of amphids, but differs in having small and triangular cardia, absence of constriction in head region, shape of gubernaculum apophyses, rounded and weakly sclerotised lumen of pharyngeal bulb and longer spicules. Microlaimus paraglobiceps sp. n. morphologically resembles M. globiceps de Man, 1880 in the shape of the body, structure of the male sexual organs and presence of precloacal pore, but the main difference is a shorter body, cuticle finely annulated all over the body and absence of sexual dimorphism in the size of amphideal fovea.

  8. Genetic and toxinological characterization of North Atlantic strains of the dinoflagellate Ostreopsis and allelopathic interactions with toxic and non-toxic species from the genera Prorocentrum, Coolia and Gambierdiscus.

    Science.gov (United States)

    García-Portela, María; Riobó, Pilar; Franco, José Mariano; Bañuelos, Rosa Mª; Rodríguez, Francisco

    2016-12-01

    The genus Ostreopsis includes several toxic species that can develop blooms in benthic ecosystems, with potential harmful consequences for human health and marine invertebrates. Despite of this, little is known about the allelopathic interactions between these organisms and other co-occurring microalgae that exploit similar spatial and nutrient resources in benthic ecosystems. The aim of this study was to follow these interactions in cultures of two Ostreopsis ribotypes with different toxin profiles (O. cf. ovata contained ovatoxins-a, b, c and e, while only ovatoxin-d was found in O .sp. "Lanzarote-type"), mixed with species of three benthic dinoflagellate genera (Coolia, Prorocentrum and Gambierdiscus), isolated from the same area (North East Atlantic, Canary Islands). In a first experiment, the potential allelopathic effects on growth rates were followed, in mixed cultures of Coolia monotis (a non toxic species) exposed to the clarified medium and to cells of O. sp."Lanzarote-type" and O. cf. ovata. Growth delayed in C. monotis was observed specially in clarified medium, while the O. sp. "Lanzarote-type" strain attained much lower densities in mixed cultures. In a second experiment, we examined the potential effects of clarified media from O. sp."Lanzarote-type" and O. cf. ovata on the adherence capacity in two toxic species (Prorocentrum hoffmannianum and Gambierdiscus excentricus). Contrasting effects were found: a significant increase of adherence capacity in P. hoffmannianum vs attachment decline in G. excentricus, that experienced also severe deleterious effects (cell lysis). Our results suggest the existence of weak to moderate allelopathic interactions between the studied organisms, although the outcome is dependent on the species involved. Copyright © 2016 Elsevier B.V. All rights reserved.

  9. Revision of the orchid genera Chrysoglossum, Collabium, Diglyphosa, and Pilophyllum (subtribe Collabiinae)

    NARCIS (Netherlands)

    Burgh, van der W.; Vogel, de E.F.

    1997-01-01

    This article contains a taxonomic revision of four orchid genera of the subtribe Collabiinae: Chrysoglossum (4 species), Collabium (11 species), Diglyphosa (2 species), and Pilophyllum (1 species). Three species are described as new: Chrysoglossum ensigerum, Collabium acuticalcar and Collabium

  10. Redefinition of the genera Malaxis Sol. ex Sw. and Microstylis (Nutt. Eaton (Orchidaceae, Epidendroideae

    Directory of Open Access Journals (Sweden)

    Dariusz L. Szlachetko

    2011-01-01

    Full Text Available A new definition of the genera Malaxis Sol. ex Sw. and Microstylis (Nutt. Eaton is presented. The genera are briefly described and illustrated. A list of Microstylis species is added. Four new nomenclatural combinations are proposed.

  11. A revision of the orchid genera Ania Lindley, Hancockia Rolfe, Mischobulbum Schltr. and Tainia Blume

    NARCIS (Netherlands)

    Turner, Hubert

    1992-01-01

    This study presents a taxonomic revision of the orchid genera Ania, Hancockia, Mischobulbum and Tainia. Keys to the genera and species are given, together with a desciption of each species. All species are also represented by line drawings. In toto, 31 species and 2 subspecies are recognised. Four

  12. The genera of Nematinae (Hymenoptera, Tenthredinidae

    Directory of Open Access Journals (Sweden)

    Marko Prous

    2014-10-01

    Full Text Available Recent phylogenetic studies on Nematinae based on DNA sequences have shown extensive incongruencies with current nomenclature of genus-group taxa. Here, we expand previous DNA sequence datasets based on three genes (CoI, Cytb, and EF-1α, to include a fourth (NaK and more genera. The analyses largely confirm the previous findings, particularly the existence of two well-supported large clades, Euura and Pristiphora, together comprising more than 75% of the species of Nematinae. Basal relationships within these two clades remain poorly resolved, mirroring the difficulties in delimiting genera based on morphology. In addition, a moderately supported small clade, Nematus, is found. The relationships between the Euura, Pristiphora, and Nematus clades are uncertain. Therefore, to stabilize the nomenclature we treat these clades as genera. This taxonomic treatment results in numerous new combinations of species names. The following synonymies are proposed for the available genus-group names. Synonyms of Euura Newman, 1837: Cryptocampus Hartig, 1837, Euura Agassiz, 1848, Pontania Costa, 1852, syn. n., Epitactus Förster, 1854, syn. n., Amauronematus Konow, 1890, syn. n., Holcocneme Konow, 1890, syn. n., Pachynematus Konow, 1890, syn. n., Holcocnema Schulz, 1906, syn. n., Holcocnemis Konow, 1907, syn. n., Pteronidea Rohwer, 1911, syn. n., Pontopristia Malaise, 1921, syn. n., Brachycoluma Strand, 1929, syn. n., Decanematus Malaise, 1931, syn. n., Pikonema Ross, 1937, syn. n., Phyllocolpa Benson, 1960, syn. n., Eitelius Kontuniemi, 1966, syn. n., Gemmura E.L. Smith, 1968, Eupontania Zinovjev, 1985, syn. n., Larinematus Zhelochovtsev, 1988, syn. n., Polynematus Zhelochovtsev, 1988, syn. n., Bacconematus Zhelochovtsev, 1988, syn. n., Alpinematus Lacourt, 1996, syn. n., Epicenematus Lacourt, 1998, syn. n., Kontuniemiana Lacourt, 1998, syn. n., Lindqvistia Lacourt, 1998, syn. n., Luea Wei and Nie, 1998, syn. n., and Tubpontania Vikberg, 2010, syn. n. Synonyms

  13. New records of olpiid pseudoscorpions (Pseudoscorpiones: Olpiidae) from the Caribbean area and Surinam, with descriptions of four new species of the genera Pachyolpium Beier, Tricholpium gen. nov. and Heterohorus gen. nov.

    NARCIS (Netherlands)

    Tooren, van den D.

    2011-01-01

    A large number of new localities for Aphelolpium scitulum, A. brachytarsus, A. thibaudi, P. arubense arubense, P. a. variabile, P. confusum and P. granulatum are reported. Two new identification keys are given: an adapted and extended key to the Caribbean genera of the pseudoscorpion family Olpiidae

  14. Molecular phylogeny of Trametes and related genera based on ...

    African Journals Online (AJOL)

    Some species of Trametes and their related genera are so similar in microstructure characteristics that it is difficult to identify and separate them by traditional taxonomy. In this study, we elucidated relationships among Trametes through comparison of the nuclear internal transcribed spacer (ITS) and the nearly complete ...

  15. A key to the Mexican and Central America Genera of Anthonomini (Curculionidae, Curculioninae)

    Science.gov (United States)

    Hernández, Macotulio Soto; Jones, Robert W.; Castillo, Pedro Reyes

    2013-01-01

    Abstract Presently the only keys available for identification of genera of Anthonomini are limited to those of the United States of America and Canada. A dichotomous key is presented to identify all genera of Mexican and Central American Anthonomini. Previous keys do not include the genera Achia, Botanebius, Loncophorus, Loncophorellus and Melexerus. A brief synopsis is given for each genus and photographs of representative species are included. PMID:23717181

  16. On mod 2 and higher elliptic genera

    International Nuclear Information System (INIS)

    Liu Kefeng

    1992-01-01

    In the first part of this paper, we construct mod 2 elliptic genera on manifolds of dimensions 8k+1, 8k+2 by mod 2 index formulas of Dirac operators. They are given by mod 2 modular forms or mod 2 automorphic functions. We also obtain an integral formula for the mod 2 index of the Dirac operator. As a by-product we find topological obstructions to group actions. In the second part, we construct higher elliptic genera and prove some of their rigidity properties under group actions. In the third part we write down characteristic series for all Witten genera by Jacobi theta-functions. The modular property and transformation formulas of elliptic genera then follow easily. We shall also prove that Krichever's genera, which come from integrable systems, can be written as indices of twisted Dirac operators for SU-manifolds. Some general discussions about elliptic genera are given. (orig.)

  17. Conspectus of the genera Amylotheca, Cyne, Decaisnina, Lampas, Lepeostegeres, and Loxanthera (Loranthaceae)

    NARCIS (Netherlands)

    Barlow, Bryan A.

    1993-01-01

    The Australasian/Malesian group of genera Amylotheca, Cyne, Decaisnina, Lampas, Lepeostegeres and Loxanthera is reviewed. Particular attention is given to the species of the Malesian region, as a precursor to a treatment of Loranthaceae for Flora Malesiana. The genera are part of a floristic element

  18. New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera)

    NARCIS (Netherlands)

    Nieukerken, van E.J.; Doorenweerd, C.; Nishida, K.; Snyers, C.

    2016-01-01

    After finding distinct clades in a molecular phylogeny for Nepticulidae that could not be placed in any known genera and discovering clear apomorphic characters that define these clades, as well as a number of Neotropical species that could be placed in known genera but were undescribed, three new

  19. Evidence of Possible Evolutionary Divergence in Plant Genera Based on Antioxidant Properties

    Science.gov (United States)

    Asai, Elizabeth; Cao, Sharon

    2009-01-01

    The purpose of this investigation was to determine if three Western species of the Panax, Lycium, and Astragalus genera had antibacterial and/or antioxidant properties, and how their properties compared to Eastern herbs in the same genera. The group hypothesized that when compared, the corresponding herbs would have identical antibacterial and…

  20. SYSTEMATIC REVISION OF THE GENERA OF PANGASIIDAE (SILURIFORMES, OSTARIOPHYSI

    Directory of Open Access Journals (Sweden)

    Rudhy Gustiano

    2008-06-01

    Full Text Available The family Pangasiidae belongs to the suborder Siluroidei, order Siluriformes, and suborder Ostariophysi. Since the groups were established as Pangasiini Bleeker, 1858; its content and classification have been greatly changed. Judging from the literature, the main constraint to cultivate wild species and to optimize the production of cultured species is needed to the poorly documented systematics of this family. Therefore the objective of the present study is to provide the diagnostic characters and the keys for identification the genera of Pangasiidae. The results clearly demonstrate that biometrically four natural groups can be distinguished. They are the genus Helicophagus, Pangasianodon, Pteropangasius, and Pangasius. The diagnosis of the family, the identification key of the genera and the description are given.

  1. Description of Kuraishia piskuri f.a., sp. nov., a new methanol assimilating yeast and transfer of phylogenetically related Candida species to the genera Kuraishia and Nakazawaea as new combinations

    Science.gov (United States)

    The new anamorphic yeast Kuraishia piskuri, f.a., sp. nov. is described for three strains that were isolated from insect frass from trees growing in Florida, USA (type strain, NRRL YB-2544, CBS 13714). Species placement was based on phylogenetic analysis of nuclear gene sequences for the D1/D2 domai...

  2. Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera

    DEFF Research Database (Denmark)

    Lukjancenko, Oksana; Ussery, David; Wassenaar, Trudy M.

    2012-01-01

    Six bacterial genera containing species commonly used as probiotics for human consumption or starter cultures for food fermentation were compared and contrasted, based on publicly available complete genome sequences. The analysis included 19 Bifidobacterium genomes, 21 Lactobacillus genomes, 4...... Lactococcus and 3 Leuconostoc genomes, as well as a selection of Enterococcus (11) and Streptococcus (23) genomes. The latter two genera included genomes from probiotic or commensal as well as pathogenic organisms to investigate if their non-pathogenic members shared more genes with the other probiotic......- and core genome of each genus were compared. In addition, it was investigated whether pathogenic genomes contain different COG classes compared to the probiotic or fermentative organisms, again comparing their pan- and core genomes. The obtained results were compared with published data from the literature...

  3. ‘Khelaifiella massiliensis’, ‘Niameybacter massiliensis’, ‘Brachybacterium massiliense’, ‘Enterobacter timonensis’, ‘Massilibacillus massiliensis’, new bacterial species and genera isolated from the gut microbiota of healthy infants

    Directory of Open Access Journals (Sweden)

    M. Tidjani Alou

    2017-09-01

    Full Text Available The main characteristics of ‘Khelaifiella massiliensis’ strain Mt13T (= CSUR P1935, = DSM100591, ‘Niameybacter massiliensis’ strain Mt14T (= CSUR P1909, = DSM100592, ‘Brachybacterium massiliense’ strain MT5T (= CSUR P2240, = DSM101766, ‘Enterobacter timonensis’ strain mt20T (= CSUR P2201, = DSM 101775 and ‘Massilibacillus massiliensis’ strain Marseille-P2411T (= CSUR P2411, = DSM102838, new species isolated from the gut of healthy African infants, are presented.

  4. Identification and phylogeny of some species of the genera Sporidiobolus and Rhodotorula using analysis of the 5.8s rDNA gene and two ribosomal internal transcribed spacers

    Directory of Open Access Journals (Sweden)

    Mokhtari M.

    2011-01-01

    Full Text Available Due to the problems encountered in routine morphological and physiological procedures that are used in yeast identification, DNA-based methods have recently been developed. In the present study, l66 yeast strains were isolated from several apple and citrus cultivars. After analysis by basic morphological methods, the ITS1 and ITS2 regions of the isolates were amplified separately, and the isolates were grouped based on fragment size polymorphism (FSP of the amplicons. By comparing the electrophoretic patterns of the PCR products with Rhodotorula mucilaginosa, species were identified as Rhodotorula. For precise and final identification, the ITS-PCR products were subjected to sequencing followed by Blast analysis. As a result, eight isolates were identified as belonging to the Rhodotorula genus, of which five were identified as R. mucilaginosa and three as R. glutinis, and one as a Sporidiobolus. We conclude that the method PCR-FSP, in combination with other approaches, is useful for the identification of yeast species.

  5. Review of the genera Stenopyrgota Malloch and Tropidothrinax Enderlein (Diptera, Pyrgotidae

    Directory of Open Access Journals (Sweden)

    Ramon Luciano Mello

    2014-03-01

    Full Text Available Review of the genera Stenopyrgota Malloch and Tropidothrinax Enderlein (Diptera, Pyrgotidae. The Neotropical genera Stenopyrgota Malloch, 1929 and Tropidothrinax Enderlein, 1942 are reviewed. The genus Stenopyrgota is composed by the species S. mexicana Malloch, 1929 and S. crassitibia Aczél, 1956. The monotypic genus Tropidothrinax is composed by the species T. boliviensis Enderlein, 1942. The species of Stenopyrgota and Tropidothrinax are redescribed and illustrations of the main taxonomic characters are given. Illustrations of the type material of the species covered by this paper are presented for the first time.

  6. Studies on Neotropical Phasmatodea XVI: Revision of Haplopodini Günther, 1953 (rev. stat.), with notes on the subfamily Cladomorphinae Bradley & Galil, 1977 and the descriptions of a new tribe, four new genera and nine new species (Phasmatodea: "Anareolatae": Phasmatidae: Cladomorphinae).

    Science.gov (United States)

    Hennemann, Frank H; Conle, Oskar V; Perez-Gelabert, Daniel E

    2016-06-27

    eggs. Haplopodini Günther, 1953 is re-established (rev. stat.) and comprises almost exclusively Caribbean genera previously placed in Hesperophasmatini by Bradley & Galil (1977) or Cranidiini by Zompro, (2004). Aploploides Rehn & Hebard, 1938, Diapherodes Gray, 1835, Haplopus Burmeister, 1838 and Paracranidium Brock, 1998 were misplaced in Cranidiini and are transferred to Haplopodini. On the basis of numerous morphological characters of the insects and eggs Hesperophasmatini is removed from Pseudophasmatidae: Xerosomatinae and re-transferred to its previous position in the subfamily Cladomorphinae sensu lato. A detailed newdiagnosis of Hesperophasmatini is presented, but is only provisional since the true diversity is as yet only fractionally known. The lack of a gula distinguishes Hesperophasmatini from all other tribes. The genus Laciphorus Redtenbacher, 1908 is removed from Hesperophasmatini and transferred to Diapheromeridae: Diapheromerinae: Diapheromerini. The new tribe Pterinoxylini n. trib. is established to contain only the type-genus Pterinoxylus Audinet-Serville, 1838. It is closely related and perhaps the sister taxon of Hesperophasmatini, with which it shares the presence of rough sensory areas on the probasisternum and profurcasternum. It differs from Hesperophasmatini and Haplopodini by the presence of a tympanal region (= stridulatory organ) in the alae of females and the alveolar eggs, which possess peripheral opercular and polar structures. Haplopodini is likely to be the sister group of Pterinoxylini n. trib. + Hesperophasmatini.        The tribe Haplopodini rev. stat. is revised at the species level and comprises eight almost exclusively Caribbean genera, four of which are newly described. All eight genera now contained in Haplopodini are described in detail, differentiated from their closest relatives and their relationships and systematic position within Haplopodini are discussed. Keys and maps showing their distributions are presented

  7. A pictorial key and diagnosis of the Brazilian genera of Micropezidae (Diptera, Nerioidea

    Directory of Open Access Journals (Sweden)

    Gustavo Borges Ferro

    2014-03-01

    Full Text Available A pictorial key and diagnosis of the Brazilian genera of Micropezidae (Diptera, Nerioidea. This paper provides the first pictorial key and diagnosis for the Brazilian genera of the Micropezidae, based on external morphological characters illustrated with photographs. The key includes 13 genera: Cardiacephala Macquart, Cliobata Enderlein, Grallipeza Rondani, Metasphen Frey, Micropeza Meigen, Parasphen Enderlein, Planipeza Marshall, Plocoscelus Enderlein, Poecilotylus Hennig, Ptilosphen Enderlein, Rainieria Rondani, Scipopus Enderlein and Taeniaptera Macquart. For each genus, the species known to occur in Brazil are listed and their distribution records, including new ones, are provided.

  8. Anatomía de especies mexicanas de los géneros Phoradendron y Psittacanthus, endémicos del Nuevo Mundo Anatomy of Mexican species of the genera Phoradendron and Psittacanthus, endemic to the New World

    Directory of Open Access Journals (Sweden)

    Maricela Gómez-Sánchez

    2011-12-01

    Full Text Available Phoradendron y Psittacanthus habitan exclusivamente en América y agrupan plantas hemiparásitas. El conocimiento de la anatomía de especies mexicanas es escaso y son varias en las que no ha sido tratada. Este trabajo describe la anatomía de 5 especies de los géneros que arriba se mencionan a partir de cortes con micrótomo, a mano libre, macerados y diafanizados. Se hicieron pruebas histoquímicas en material fresco. Entre las especies existen caracteres comunes. La arquitectura foliar se describe como venación actinódroma reticulada y venas laterales con las vénulas modificadas en traqueidas dilatadas. Anatómicamente, la hoja mostró estomas paracíticos y mesofilo isobilateral. Las drusas son abundantes en pecíolo y lámina de Phoradendron. El tallo presenta los vasos del xilema en hileras radiales, el parénquima cortical y la médula contienen drusas y braquiesclereidas. El polen es esférico o triangular y tricolporado. Psittacanthus se distingue porque debajo del ovario se desarrolla un tejido de células con paredes engrosadas y lignificadas y el fruto contiene una viscina conspicua. Los cristales prismáticos, la cutícula rugosa, la peridermis con tejido suberoso y los haces vasculares en el exocarpo, no se habían descrito anteriormente. Las astroesclereidas cristalíferas, el córtex heterogéneo, el epitelio cuticular y la cutícula estriada que citan otros autores, no se observaron. Las substancias pécticas y los compuestos fenólicos tienen mayor presencia en Psittacanthus.Phoradendron and Psittacanthus only grow in America and they include hemiparasitic plants. The anatomy of Mexican species is partial and some of them had not anatomically been studied. The vegetative and reproductive anatomy of 5 species was described as seen in slides obtained through microtome, by free hand, and macerated and clarified tissues. Histochemistry tests on fresh material were made. The leaves have paracytic stomata, reticulate

  9. Delimiting Cladosporium from morphologically similar genera

    NARCIS (Netherlands)

    Crous, P.W.; Braun, U.; Schubert, K.; Groenewald, J.Z.

    2007-01-01

    The genus Cladosporium is restricted to dematiaceous hyphomycetes with a coronate scar type, and Davidiella teleomorphs. In the present study numerous cladosporium-like taxa are treated, and allocated to different genera based on their morphology and DNA phylogeny derived from the LSU nrRNA gene.

  10. Elliptic genera from multi-centers

    Energy Technology Data Exchange (ETDEWEB)

    Gaddam, Nava [Institute for Theoretical Physics and Center for Extreme Matter and Emergent Phenomena,Utrecht University, 3508 TD Utrecht (Netherlands)

    2016-05-13

    I show how elliptic genera for various Calabi-Yau threefolds may be understood from supergravity localization using the quantization of the phase space of certain multi-center configurations. I present a simple procedure that allows for the enumeration of all multi-center configurations contributing to the polar sector of the elliptic genera — explicitly verifying this in the cases of the quintic in ℙ{sup 4}, the sextic in Wℙ{sub (2,1,1,1,1)}, the octic in Wℙ{sub (4,1,1,1,1)} and the dectic in Wℙ{sub (5,2,1,1,1)}. With an input of the corresponding ‘single-center’ indices (Donaldson-Thomas invariants), the polar terms have been known to determine the elliptic genera completely. I argue that this multi-center approach to the low-lying spectrum of the elliptic genera is a stepping stone towards an understanding of the exact microscopic states that contribute to supersymmetric single center black hole entropy in N=2 supergravity.

  11. Body size, reproductive biology and abundance of the rare pseudoboini snakes genera Clelia and Boiruna (Serpentes, Colubridae) in Brazil

    OpenAIRE

    Lígia Pizzatto

    2005-01-01

    Pseudoboini snakes of the genera Clelia and Boiruna are apparently rare in nature and certainly rare in collections. This work presents data on body size, reproduction and abundance of five Brazilian species of these genera, in the largest collection of snakes in Latin America, the Instituto Butantan. Despite scarcity of data, follicular cycle seems to be continuous in most species, except Clelia rustica, which occurs in highlands. Females are largerthan males in all species, and fecundity is...

  12. Problemas de conservação das espécies dos gêneros Froelichia Moench e Froelichiella R.E. Fries (Amaranthaceae no Brasil Problems of conservation of the species of the genera Froleichia Moench and Froelichiella R.E. Fries (Amaranthaceae in Brazil

    Directory of Open Access Journals (Sweden)

    Maria Salete Marchioretto

    2005-06-01

    Full Text Available O estado de conservação dos representantes dos gêneros Froelichia Moench e Froelichiella R.E. Fries (Amaranthaceae no Brasil é discutido, baseado nos critérios da União Internacional para a Conservação da Natureza (IUCN. A maioria das espécies pode ser considerada como vulnerável, mas também podem apresentar problemas de conservação mais sérios em base regional, enquanto outras espécies podem ser consideradas como: provavelmente extinta (EX, criticamente em perigo (CR ou em perigo (PE ao menos em extensas porções das suas áreas de distribuição original.The state of conservation of the representatives of the genera Froleichia Moench and Froelichiella R.E. Fries (Amaranthaceae in Brazil is discussed based in the criteria of International Union for Conservation of Nature and Natural Resourses (IUCN. Most of the species can be considered as vulnerable, but may also present more serious problems on a regional basis, while some species should be considered as probably extint (EX, criticaly endangered (CR or endangered (PE at least in large part of their original distribution range.

  13. Three new South American mailed catfishes of the genera Rineloricaria and Loricariichthys (Pisces, Siluriformes, Loricariide)

    NARCIS (Netherlands)

    Isbrücker, I.J.H.; Nijssen, H.

    1979-01-01

    Three new species belonging to two different genera of South American mailed catfishes of the subfamily Loricariinae are described and figured. A discussion of and comparative notes on related species are added. Rineloricaria formosa n. sp. is described from the Río Inírida/Río Orinoco drainage in

  14. Conspectus of the genera Scurrula L. and Taxillus Tieghem (Loranthaceae) in the Malesian region

    NARCIS (Netherlands)

    Barlow, Bryan A.

    1991-01-01

    The closely related genera Scurrula and Taxillus are reviewed for the Malesian region as a precursor to a treatment for Flora Malesiana. Scurrula is represented in the region by 8 species, of which S. aphodastrica and S. didyma are described as new. Taxillus is represented by one species, T.

  15. Phylogenetic reassessment of Specklinia and its allied genera in the pleurothallidinae (Orchidaceae)

    NARCIS (Netherlands)

    Karremans, Adam P.; Albertazzi, Federico J.; Bakker, Freek T.; Bogarín, Diego; Eurlings, M.C.M.; Pridgeon, Alec; Pupulin, Franco; Gravendeel, Barbara

    2016-01-01

    The phylogenetic relationships within Specklinia (Pleurothallidinae; Orchidaceae) and related genera are re-evaluated using Bayesian analyses of nrITS and chloroplast matK sequence data of a wide sampling of species. Specklinia is found paraphyletic in the DNA based trees, with species

  16. Least speciose among the most speciose: Natural history correlates of monospecific and bispecific genera of Rodentia and Soricomorpha.

    Science.gov (United States)

    Amori, Giovanni; Bissattini, Alessandra Maria; Gippoliti, Spartaco; Vignoli, Leonardo; Maiorano, Luigi; Luiselli, Luca

    2017-11-01

    Monospecific and bispecific genera are of special concern as they represent unique phylogenetic/evolutionary trajectories within larger clades. In addition, as phylogenetically older taxa are supposed to be exposed to higher rarity and extinction risk, monospecific and bispecific genera may be intrinsically more prone to extinction risks than multispecies genera, although extinction risks also depend on the ecological and biological strategy of the species. Here, the distribution across biogeographical zones and the levels of threat to 2 speciose orders of mammals (monospecific and bispecific genera of Rodentia and Soricomorpha) are investigated in order to highlight major patterns at the worldwide scale. In Rodentia, 39.7% of the genera (n = 490) were monospecific and 17.9% were bispecific. In Soricomorpha, 44.4% of the total genera (n = 45) were monospecific and 15% were bispecific. There was a positive correlation between the number of monospecific genera and the total number of genera per family. Peaks of monospecific and bispecific genera richness were observed in Neotropical, Oriental and Afrotropical regions in rodents and in the Palearctic region in soricomorphs. Range size was significantly uneven across biogeographic region in rodents (with larger ranges in Nearctic and Oriental regions and smaller ranges in the Australian region), but there was no difference across biogeographic regions in terms of range size in soricomorphs. Most of the monospecific and bispecific genera occurred in forest habitat in both taxa. The frequency distribution of the monospecific and bispecific genera across IUCN categories did not differ significantly from the expected pattern using the total rodent genera and the multispecies genera. © 2017 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.

  17. Seagrass Ecosystem Services and Their Variability across Genera and Geographical Regions.

    Science.gov (United States)

    Mtwana Nordlund, Lina; Koch, Evamaria W; Barbier, Edward B; Creed, Joel C

    2016-01-01

    Threats to and loss of seagrass ecosystems globally, impact not only natural resources but also the lives of people who directly or indirectly depend on these systems. Seagrass ecosystems play a multi-functional role in human well-being, e.g. food through fisheries, control of erosion and protection against floods. Quantifying these services reveals their contributions to human well-being and helps justify seagrass conservation. There has been no comprehensive assessment as to whether seagrass ecosystem services are perceived to vary over the globe or amongst genera. Our study compiles the most complete list of ecosystem services provided by seagrasses so far, including bioregional- and genus-specific information from expert opinion and published studies. Several seagrass ecosystem services vary considerably in their (known) provision across genera and over the globe. Seagrasses genera are clearly not all equal with regard to the ecosystem services they provide. As seagrass genera are not evenly distributed over all bioregions, the presence of an ecosystem service sometimes depends on the genera present. Larger sized seagrass genera (e.g. Posidonia, Enhalus) are perceived to provide more substantial and a wider variety of ecosystem services than smaller species (e.g. Halophila, Lepilaena). Nevertheless, smaller species provide important services. Our findings point out data gaps, provide new insight for more efficient management and recommend caution in economic valuation of seagrass services worldwide.

  18. Minimal genera of open 4-manifolds

    OpenAIRE

    Gompf, Robert E.

    2013-01-01

    We study exotic smoothings of open 4-manifolds using the minimal genus function and its analog for end homology. While traditional techniques in open 4-manifold smoothing theory give no control of minimal genera, we make progress by using the adjunction inequality for Stein surfaces. Smoothings can be constructed with much more control of these genus functions than the compact setting seems to allow. As an application, we expand the range of 4-manifolds known to have exotic smoothings (up to ...

  19. Notes on some Acanthaceous genera and species of controversial position

    NARCIS (Netherlands)

    Bremekamp, C.E.B.

    1956-01-01

    The genus Stenandriopsis was created by S. Moore in Journ. of Bot. 44: 153. 1906 for a plant collected first by Vaughan Thompson and afterwards by Baron in an unspecified part of Madagascar. As the plate by which the description is accompanied depicts the specimen collected by Baron (n. 6708), the

  20. Review of the genera of Conoderinae (Coleoptera, Curculionidae from North America, Central America, and the Caribbean

    Directory of Open Access Journals (Sweden)

    Salvatore S. Anzaldo

    2017-07-01

    Full Text Available The thirty-nine extant genera of Conoderinae known to occur in North America, Central America, and the Caribbean are reviewed based on external morphology. An identification key is provided along with diagnoses, distributions, species counts, and natural history information, when known, for each genus. Morphological character systems of importance for weevil classification are surveyed, potential relationships among the tribes and genera are discussed, and groups most in need of taxonomic and phylogenetic attention are identified. The following genera are transferred to new tribes: Acoptus LeConte, 1876 from the Lechriopini to the Othippiini (new placement and the South American genus Hedycera Pascoe, 1870 from the Lechriopini to the Piazurini (new placement. Philides Champion, 1906 and Philinna Champion, 1906 are transferred from the Lechriopini to Conoderinae incertae sedis (new placement although their placement as conoderines is uncertain. The species Copturomimus cinereus Heller, 1895 is designated as the type species of the genus Copturomimus Heller, 1895.

  1. First genome size estimations for some eudicot families and genera

    Directory of Open Access Journals (Sweden)

    Garcia, S.

    2010-12-01

    Full Text Available Genome size diversity in angiosperms varies roughly 2400-fold, although approximately 45% of angiosperm families lack a single genome size estimation, and therefore, this range could be enlarged. To contribute completing family and genera representation, DNA C-Values are here provided for 19 species from 16 eudicot families, including first values for 6 families, 14 genera and 17 species. The sample of species studied is very diverse, including herbs, weeds, vines, shrubs and trees. Data are discussed regarding previous genome size estimates of closely related species or genera, if any, their chromosome number, growth form or invasive behaviour. The present research contributes approximately 1.5% new values for previously unreported angiosperm families, being the current coverage around 55% of angiosperm families, according to the Plant DNA C-Values Database.

    La diversidad del tamaño del genoma en angiospermas es muy amplia, siendo el valor más elevado aproximadamente unas 2400 veces superior al más pequeño. Sin embargo, cerca del 45% de las familias no presentan ni una sola estimación, por lo que el rango real podría ser ampliado. Para contribuir a completar la representación de familias y géneros de angiospermas, este estudio contribuye con valores C para 19 especies de 16 familias de eudicoticotiledóneas, incluyendo los primeros valores para 6 familias, 14 géneros y 17 especies. La muestra estudiada es muy diversa, e incluye hierbas, malezas, enredaderas, arbustos y árboles. Se discuten los resultados en función de estimaciones previas del tamaño del genoma de especies o géneros estrechamente relacionados, del número de cromosomas, la forma de crecimiento o el comportamiento invasor de las especies analizadas. El presente estudio contribuye aproximadamente en un 1,5% de nuevos valores para familias de angiospermas no estudiadas previamente, de las que actualmente existe información para el 55%, según la base de datos

  2. Genera of euophryine jumping spiders (Araneae: Salticidae), with a combined molecular-morphological phylogeny.

    Science.gov (United States)

    Zhang, Junxia; Maddison, Wayne P

    2015-03-27

    Morphological traits of euophryine jumping spiders were studied to clarify generic limits in the Euophryinae and to permit phylogenetic classification of genera lacking molecular data. One hundred and eight genera are recognized within the subfamily. Euophryine generic groups and the delimitation of some genera are reviewed in detail. In order to explore the effect of adding formal morphological data to previous molecular phylogenetic studies, and to find morphological synapomorphies, eighty-two morphological characters were scored for 203 euophryine species and seven outgroup species. The morphological dataset does not perform as well as the molecular dataset (genes 28S, Actin 5C; 16S-ND1, COI) in resolving the phylogeny of Euophryinae, probably because of frequent convergence and reversal. The formal morphological data were mapped on the phylogeny in order to seek synapomorphies, in hopes of extending the phylogeny to include taxa for which molecular data are not available. Because of homoplasy, few globally-applicable morphological synapomorphies for euophryine clades were found. However, synapomorphies that are unique locally in subclades still help to delimit euophryine generic groups and genera. The following synonyms of euophryine genera are proposed: Maeotella with Anasaitis; Dinattus with Corythalia; Paradecta with Compsodecta; Cobanus, Chloridusa and Wallaba with Sidusa; Tariona with Mopiopia; Nebridia with Amphidraus; Asaphobelis and Siloca with Coryphasia; Ocnotelus with Semnolius; Palpelius with Pristobaeus; Junxattus with Laufeia; Donoessus with Colyttus; Nicylla, Pselcis and Thianitara with Thiania. The new genus Saphrys is erected for misplaced species from southern South America.

  3. Morphology, ecology and phylogeny of cyanobacteria belonging to genera Nostoc and Desmonostoc in Lithuania

    OpenAIRE

    Špakaitė, Ina

    2014-01-01

    The aim of the study was to investigate the morphology, ecology and phylogeny of cyanobacteria belonging to genera Nostoc and Desmonostoc in Lithuania. The detailed research of freshwater and terrestrial Nostoc and Desmonostoc species provided new data on taxonomy, biology and ecology of these cyanobacteria and the overall diversity of algae in Lithuania. 20 Nostoc species and two intraspecific taxa, and 18 taxa to the Nostoc genus level were identified. Twelve Nostoc species and intraspecifi...

  4. Occurrence of cyanobacteria genera in the Vaal Dam: implications ...

    African Journals Online (AJOL)

    The occurrence of cyanobacteria genera in the Vaal Dam was analysed and the factors that influence its dominance in the particular reservoir were also investigated. The study was motivated by the effects of the secondary metabolites of cyanobacteria genera on potable water production. Cyanobacteria genera have been ...

  5. Florae Malesianae Precursores XXXIV. Notes on some genera of Celastraceae in Malaysia

    NARCIS (Netherlands)

    Hou, Ding

    1963-01-01

    There is a great diversity of opinion regarding the interpretation of the genera and some species in the former Hippocrateaceae. If one reads the comprehensive and detailed revision of the New World Hippocrateaceae by A. C. Smith (Brittonia 3, 1940, 341—555), one may have an impression of it. For

  6. Pollen of Sarawakodendron (Celastraceae) and some related genera, with notes on techniques

    NARCIS (Netherlands)

    Hou, Ding

    1969-01-01

    1. A simple technique for acetolysis of small quantities of polliniferous (herbarium) material is described and notes on pollen photomicrography are presented. 2. Pollen grains of Sarawakodendron and six related genera, consisting of twenty-nine mostly Malesian species, have been examined and

  7. Molecular phylogeny of Laetiporus and other brown rot polypore genera in North America

    Science.gov (United States)

    Daniel L. Lindner; Mark T. Banik

    2008-01-01

    Phylogenetic relationships were investigated among North American species of Laetiporus, Leptoporus, Phaeolus, Pycnoporellus, and Wolfiporia using ITS, nuclear large subunit and mitochondrial small subunit rDNA sequences. Members of these genera have poroid hymenophores, simple septate hyphae and cause brown rots in a variety of...

  8. A reassessment of the Hypoglossum group (Delesseriaceae, Rhodophyta), with a critique of its genera

    Science.gov (United States)

    Wynne, M. J.

    1988-09-01

    A reassessment of the Hypoglossum group (Delesseriaceae, Rhodophyta), with a critique of its genera. Eight genera are assigned to the Hypoglossum Kützing, Phitymophora J. Agardh, Pseudobranchioglossum Bodard, and Zellera Martens. The circumscription of the group is emended to include forms with network-forming ( Zellera) an dspirally twisted ( Duckerella) thalli. The definition of the group is lalso modified to include members (e.g. some species of Hypoglossum) in which tetrasporangia are produced by primary cells as in the Caloglossa group. Exogenous branching, a distinguishing feature of the closely related Caloglossa group, never occurs in the Hypoglossum group.

  9. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

    KAUST Repository

    Varsani, Arvind

    2014-03-22

    The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that have geminate particle morphology. Members of this family infect both monocotyledonous and dicotyledonous plants and have a nearly global distribution. With the advent of new molecular tools and low-cost sequencing, there has been a significant increase in the discovery of new geminiviruses in various cultivated and non-cultivated plants. In this communication, we highlight the establishment of three new genera (Becurtovirus, Eragrovirus and Turncurtovirus) to accommodate various recently discovered geminiviruses that are highly divergent and, in some cases, have unique genome architectures. The genus Becurtovirus has two viral species, Beet curly top Iran virus (28 isolates; leafhopper vector Circulifer haematoceps) and Spinach curly top Arizona virus (1 isolate; unknown vector), whereas the genera Eragrovirus and Turncurtovirus each have a single assigned species: Eragrostis curvula streak virus (6 isolates; unknown vector) and Turnip curly top virus (20 isolates; leafhopper vector Circulifer haematoceps), respectively. Based on analysis of all of the genome sequences available in public databases for each of the three new genera, we provide guidelines and protocols for species and strain classification within these three new genera. © 2014 Springer-Verlag Wien.

  10. Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus

    KAUST Repository

    Varsani, Arvind; Navas-Castillo, Jesú s; Moriones, Enrique; Herná ndez-Zepeda, Cecilia; Idris, Ali; Brown, Judith K.; Murilo Zerbini, F.; Martin, Darren Patrick

    2014-01-01

    The family Geminiviridae includes plant-infecting circular single-stranded DNA viruses that have geminate particle morphology. Members of this family infect both monocotyledonous and dicotyledonous plants and have a nearly global distribution. With the advent of new molecular tools and low-cost sequencing, there has been a significant increase in the discovery of new geminiviruses in various cultivated and non-cultivated plants. In this communication, we highlight the establishment of three new genera (Becurtovirus, Eragrovirus and Turncurtovirus) to accommodate various recently discovered geminiviruses that are highly divergent and, in some cases, have unique genome architectures. The genus Becurtovirus has two viral species, Beet curly top Iran virus (28 isolates; leafhopper vector Circulifer haematoceps) and Spinach curly top Arizona virus (1 isolate; unknown vector), whereas the genera Eragrovirus and Turncurtovirus each have a single assigned species: Eragrostis curvula streak virus (6 isolates; unknown vector) and Turnip curly top virus (20 isolates; leafhopper vector Circulifer haematoceps), respectively. Based on analysis of all of the genome sequences available in public databases for each of the three new genera, we provide guidelines and protocols for species and strain classification within these three new genera. © 2014 Springer-Verlag Wien.

  11. Mahseers genera Tor and Neolissochilus (Teleostei: Cyprinidae) from southern Vietnam.

    Science.gov (United States)

    Hoàng, Huy Đức; Phạm, Hùng Mạnh; Durand, Jean-Dominique; Trần, Ngân Trọng; Phan, Phúc Đình

    2015-08-25

    Two new species and two new basin records of mahseers in the genera Tor and Neolissochilus are described from the upper Krong No and middle Đồng Nai drainages of the Langbiang Plateau in southern Vietnam. These new species and new records are known from streams and rivers in montane mixed pine and evergreen forests between 140 and 1112 m. Their populations are isolated in the Sre Pok River of the Mekong basin, the middle of the Đồng Nai basin, and the An Lão River. Both new species are differentiated from their congeners by a combination of the following characters: 23-24 lateral scales, 9-10 predorsal scales, 2/7 or 1/8 pelvic-fin rays, mouth position, median lobe of lower lip, rostral hood, colour in life and by divergent mitochondrial DNA. Tor mekongensis sp. nov. is differentiated from Tor dongnaiensis sp. nov. by the number of transverse scale rows (3/1/2 vs. 4/1/2), number of pelvic-fin rays (2/7 vs. 1/8), a blunt rostral hood vs. pointed, caudal-fin lobes that are equal vs. unequal, and by mitochondrial DNA (0.7% sequence divergence). Molecular evidence identifies both species as members of the genus Tor and distinct from all congeners sampled (uncorrected sequence divergences >1.9% for all Tor species for which homologous COI sequences are available). Tor sinensis is recorded in the Krong No and the Sre Pok rivers, further south of its known distribution. Polymorphism is described in Neolissochilus stracheyi with a Tor-like morph and a Neolissochilus-like morph.

  12. Molecular phylogeny of Subtribe Artemisiinae (Asteraceae), including Artemisia and its allied and segregate genera

    Science.gov (United States)

    Watson, Linda E; Bates, Paul L; Evans, Timothy M; Unwin, Matthew M; Estes, James R

    2002-01-01

    Background Subtribe Artemisiinae of Tribe Anthemideae (Asteraceae) is composed of 18 largely Asian genera that include the sagebrushes and mugworts. The subtribe includes the large cosmopolitan, wind-pollinated genus Artemisia, as well as several smaller genera and Seriphidium, that altogether comprise the Artemisia-group. Circumscription and taxonomic boundaries of Artemisia and the placements of these small segregate genera is currently unresolved. Results We constructed a molecular phylogeny for the subtribe using the internal transcribed spacers (ITS) of nuclear ribosomal DNA analyzed with parsimony, likelihood, and Bayesian criteria. The resulting tree is comprised of three major clades that correspond to the radiate genera (e.g., Arctanthemum and Dendranthema), and two clades of Artemisia species. All three clades have allied and segregate genera embedded within each. Conclusions The data support a broad concept of Artemisia s.l. that includes Neopallasia, Crossostephium, Filifolium, Seriphidium, and Sphaeromeria. However, the phylogeny excludes Elachanthemum, Kaschgaria, and Stilnolepis from the Artemisia-group. Additionally, the monophyly of the four subgenera of Artemisia is also not supported, with the exception of subg. Dracunculus. Homogamous, discoid capitula appear to have arisen in parallel four to seven times, with the loss of ray florets. Thus capitular morphology is not a reliable taxonomic character, which traditionally has been one of the defining characters. PMID:12350234

  13. Revised taxonomy of Phoma and allied genera

    NARCIS (Netherlands)

    Gruyter, de J.

    2012-01-01

    The anamorphic genus Phoma includes many important plant pathogens. The identification of Phoma species based on studies in pure culture is difficult and time consuming and the in vitro characters are often variable. Moreover, the present classification of Phoma species
    into sections is

  14. LEAF SURFACE COMPARISON OF THREE GENERA OF ARACEAE IN INDONESIA

    Directory of Open Access Journals (Sweden)

    Ina Erlinawati

    2013-07-01

    Full Text Available Alocasia, Colocasia and Remusatia are the genera of Araceae family which have high economic value, such as for food and ornamental plants. Those three genera, previously treated as Colocasieae tribe. Later, based on Nauheimer, L. et al. study in 2012, using plastid and nuclear DNA, Alocasia is placed in different tribe. Study on leaf anatomy of Araceae is still poor known. Comparison of three genera of Araceae, indicates a difference in the epidermis. Alocasia and Colocasia have stomata on both leaf surfaces (amphistomatic but Remusatia has stomata only limited on the lower surface. The three genera can be distinguished from epidermal cell shape, stomata complex and the presence of stomata.

  15. Eucalyptus microfungi known from culture. 2. Alysidiella, Fusculina and Phlogicylindrium genera nova, with notes on some other poorly known taxa

    NARCIS (Netherlands)

    Summerell, B.A.; Groenewald, J.Z.; Carnegie, A.J.; Summerbell, R.C.; Crous, P.W.

    2006-01-01

    Although numerous microfungi have been described from Eucalyptus in recent years, this plant genus remains a rich substrate colonized by numerous undescribed species. In the present study several species and genera of ascomycetes were collected from symptomatic leaves or from leaf litter of this

  16. Flora of St Katherine Protectorate: key to families and genera ...

    African Journals Online (AJOL)

    An illustrated key to families and genera of the flora of the St Katherine Protectorate is provided to facilitate the identification of the unique flora of the area, based on five years of collecting mainly in the mountains and wadis surrounding the town of St Katherine. The key includes 43 families and 141 genera, the families ...

  17. New Records of Bee Genera (Hymenoptera: Apoidea from Colombia

    Directory of Open Access Journals (Sweden)

    Víctor H. González

    2006-07-01

    Full Text Available The solitary bee genera Lophothygater Moure y Michener (Apidae, Eucerini and Tapinotaspoides Moure (Apidae, Tapinotaspidini are reported from northern Colombia for the first time. These genera were previously known from the central Brazilian Amazonian and Argentina and Paraguay, respectively.

  18. The sub-genera of Avian Plasmodium

    Directory of Open Access Journals (Sweden)

    Landau I.

    2010-03-01

    Full Text Available The study of the morphology of a species of Plasmodium is difficult because these organisms have relatively few characters. The size of the schizont, for example, which is easy to assess is important at the specific level but is not always of great phylogenetic significance. Factors reflecting the parasite’s metabolism provide more important evidence. Thus the position of the parasite within the host red cell (attachment to the host nucleus or its membrane, at one end or aligned with it has been shown to be constant for a given species. Another structure of essential significance that is often ignored is a globule, usually refringent in nature, that was first described in Plasmodium vaughani Novy & MacNeal, 1904 and that we consider to be characteristic of the sub-genus Novyella. Species without this structure, previously classified in this sub-genus, are now included in the new sub-genus Papernaia n. sg.

  19. On names of genera of prokaryotes that are later homonyms of generic names with standing in the zoological or the botanical nomenclature. Proposal of Neomegalonema gen. nov. and Neomegalonema perideroedes comb. nov. as replacements for the prokaryotic generic name Meganema and the species name Meganema perideroedes.

    Science.gov (United States)

    Oren, Aharon

    2017-10-01

    I here present a survey of generic names with standing in the prokaryotic nomenclature that have homonyms with standing under the International Code of Zoological Nomenclature and/or the International Code of Nomenclature for algae, fungi, and plants. I especially discuss such names added after Principle 2 of the Bacteriological Code/Prokaryotic Code was changed in 1999 to make the prokaryote nomenclature not independent of botanical and zoological nomenclature. Cases include the genera Micromonas, Quadrococcus, Yania, Sinococcus, and Meganema. The generic name Meganema was not previously recognized as a homonym of two genera with standing in the zoological nomenclature. Therefore, I here propose renaming Meganema and Meganema perideroedes as Neomegalonema gen. nov. and Neomegalonema perideroedes comb. nov., respectively.

  20. The genera of Chrysomelinae (Coleoptera: Chrysomelidae in Costa Rica

    Directory of Open Access Journals (Sweden)

    R. Wills Flowers

    2004-03-01

    Full Text Available Keys in Spanish and English are given for the genera of Chrysomelinae known from Costa Rica. For each genus, a list of species compiled from collections in the University of Costa Rica, the National Biodiversity Institute, and the entomological literature is presented. The genus Planagetes Chevrolat 1843 is recorded for the first time from Central America, and the genus Leptinotarsa Stål 1858 is synonymized with Stilodes Chevrolat 1843Se presenta claves en español y inglés para los géneros de Chrysomelinae conocidas de Costa Rica. Para cada género, se presenta una lista de especies compiladas de las colecciones de la Universidad de Costa Rica, el Instituto Nacional de Biodiversidad, y la literatura entomológica. El género Planagetes Chevrolat 1843 está registrado por primera vez de América Central, y el género Leptinotarsa Stål 1858 está sinonomizado con Stilodes Chevrolat 1843

  1. Distinguishing centrarchid genera by use of lateral line scales

    Science.gov (United States)

    Roberts, N.M.; Rabeni, C.F.; Stanovick, J.S.

    2007-01-01

    Predator-prey relations involving fishes are often evaluated using scales remaining in gut contents or feces. While several reliable keys help identify North American freshwater fish scales to the family level, none attempt to separate the family Centrarchidae to the genus level. Centrarchidae is of particular concern in the midwestern United States because it contains several popular sport fishes, such as smallmouth bass Micropterus dolomieu, largemouth bass M. salmoides, and rock bass Ambloplites rupestris, as well as less-sought-after species of sunfishes Lepomis spp. and crappies Pomoxis spp. Differentiating sport fish from non-sport fish has important management implications. Morphological characteristics of lateral line scales (n = 1,581) from known centrarchid fishes were analyzed. The variability of measurements within and between genera was examined to select variables that were the most useful in further classifying unknown centrarchid scales. A linear discriminant analysis model was developed using 10 variables. Based on this model, 84.4% of Ambloplites scales, 81.2% of Lepomis scales, and 86.6% of Micropterus scales were classified correctly using a jackknife procedure. ?? Copyright by the American Fisheries Society 2007.

  2. Proposed update to the taxonomy of the genera Hepacivirus and Pegivirus within the Flaviviridae family

    DEFF Research Database (Denmark)

    Smith, Donald B.; Becher, Paul; Bukh, Jens

    2016-01-01

    Proposals are described for the assignment of recently reported viruses, infecting rodents, bats and other mammalian species, to new species within the Hepacivirus and Pegivirus genera (family Flaviviridae). Assignments into 14 Hepacivirus species (Hepacivirus A– N) and 11 Pegivirus species (Pegi...

  3. Contrasting latitudinal patterns of life-history divergence in two genera of new world thrushes (Turdinae)

    Science.gov (United States)

    Boyce, Andy J.; Martin, Thomas E.

    2017-01-01

    Several long-standing hypotheses have been proposed to explain latitudinal patterns of life-history strategies. Here, we test predictions of four such hypotheses (seasonality, food limitation, nest predation and adult survival probability) by examining life-history traits and age-specific mortality rates of several species of thrushes (Turdinae) based on field studies at temperate and tropical sites and data gathered from the literature. Thrushes in the genus Catharus showed the typical pattern of slower life-history strategies in the tropics while co-occuring Turdus thrushes differed much less across latitudes. Seasonality is a broadly accepted hypothesis for latitudinal patterns, but the lack of concordance in latitudinal patterns between co-existing genera that experience the same seasonal patterns suggests seasonality cannot fully explain latitudinal trait variation in thrushes. Nest-predation also could not explain patterns based on our field data and literature data for these two genera. Total feeding rates were similar, and per-nestling feeding rates were higher at tropical latitudes in both genera, suggesting food limitation does not explain trait differences in thrushes. Latitudinal patterns of life histories in these two genera were closely associated with adult survival probability. Thus, our data suggest that environmental influences on adult survival probability may play a particularly strong role in shaping latitudinal patterns of life-history traits.

  4. Phylogenetic Relationships of Five Asian Schilbid Genera Including Clupisoma (Siluriformes: Schilbeidae.

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    Jing Wang

    Full Text Available The phylogenetic relationships of Asian schilbid catfishes of the genera Clupisoma, Ailia, Horabagrus, Laides and Pseudeutropius are poorly understood, especially those of Clupisoma. Herein, we reconstruct the phylogeny of 38 species of catfishes belonging to 28 genera and 14 families using the concatenated mitochondrial genes COI, cytb, and 16S rRNA, as well as the nuclear genes RAG1 and RAG2. The resulting phylogenetic trees consistently place Clupisoma as the sister taxon of Laides, and the five representative Asian schilbid genera form two monophyletic groups with the relationships (Ailia (Laides, Clupisoma and (Horabagrus, Pseudeutropius. The so-called "Big Asia" lineage relates distantly to African schilbids. Independent analyses of the mitochondrial and nuclear DNA data yield differing trees for the two Asian schilbid groups. Analyses of the mitochondrial gene data support a sister-group relationship for (Ailia (Laides, Clupisoma and the Sisoroidea and a sister-taxon association of (Horabagrus, Pseudeutropius and the Bagridae. In contrast, analyses of the combined nuclear data indicate (Ailia (Laides, Clupisoma to be the sister group to (Horabagrus, Pseudeutropius. Our results indicate that the Horabagridae, recognized by some authors as consisting of Horabagrus, Pseudeutropius and Clupisoma does not include the latter genus. We formally erect a new family, Ailiidae fam. nov. for a monophyletic Asian group comprised of the genera Ailia, Laides and Clupisoma.

  5. Symbioses with nitrogen-fixing bacteria: nodulation and phylogenetic data across legume genera.

    Science.gov (United States)

    Afkhami, Michelle E; Luke Mahler, D; Burns, Jean H; Weber, Marjorie G; Wojciechowski, Martin F; Sprent, Janet; Strauss, Sharon Y

    2018-02-01

    How species interactions shape global biodiversity and influence diversification is a central - but also data-hungry - question in evolutionary ecology. Microbially based mutualisms are widespread and could cause diversification by ameliorating stress and thus allowing organisms to colonize and adapt to otherwise unsuitable habitats. Yet the role of these interactions in generating species diversity has received limited attention, especially across large taxonomic groups. In the massive angiosperm family Leguminosae, plants often associate with root-nodulating bacteria that ameliorate nutrient stress by fixing atmospheric nitrogen. These symbioses are ecologically-important interactions, influencing community assembly, diversity, and succession, contributing ~100-290 million tons of N annually to natural ecosystems, and enhancing growth of agronomically-important forage and crop plants worldwide. In recent work attempting to determine whether mutualism with N-fixing bacteria led to increased diversification across legumes, we were unable to definitively resolve the relationship between diversification and nodulation. We did, however, succeed in compiling a very large searchable, analysis-ready database of nodulation data for 749 legume genera (98% of Leguminosae genera; LPWG 2017), which, along with associated phylogenetic information, will provide a valuable resource for future work addressing this question and others. For each legume genus, we provide information about the species richness, frequency of nodulation, subfamily association, and topological correspondence with an additional data set of 100 phylogenetic trees curated for database compatibility. We found 386 legume genera were confirmed nodulators (i.e., all species examined for nodulation nodulated), 116 were non-nodulating, four were variable (i.e., containing both confirmed nodulators and confirmed non-nodulators), and 243 had not been examined for nodulation in published studies. Interestingly

  6. Body size, reproductive biology and abundance of the rare pseudoboini snakes genera Clelia and Boiruna (Serpentes, Colubridae in Brazil

    Directory of Open Access Journals (Sweden)

    Lígia Pizzatto

    2005-12-01

    Full Text Available Pseudoboini snakes of the genera Clelia and Boiruna are apparently rare in nature and certainly rare in collections. This work presents data on body size, reproduction and abundance of five Brazilian species of these genera, in the largest collection of snakes in Latin America, the Instituto Butantan. Despite scarcity of data, follicular cycle seems to be continuous in most species, except Clelia rustica, which occurs in highlands. Females are largerthan males in all species, and fecundity is low when compared to other pseudoboini. Abundance is very low for all species even considering 100 years of collecting, and it is decreasing in recent decades when compared to other snakes (Bothrops jararaca, Oxyrhopus guibei, O. clathratus, Philodryas patagoniensis, Sibynomorphus mikanii, and Spilotes pullatus. The studied species present at least five traits of commonly threatened species and require more attention in researches and conservation policies.

  7. Revision of the stiletto fly genera Acupalpa Kröber and Pipinnipons Winterton (Diptera, Therevidae, Agapophytinae using cybertaxonomic methods, with a key to Australasian genera

    Directory of Open Access Journals (Sweden)

    Shaun Winterton

    2011-05-01

    Full Text Available Australian stiletto flies of the sister-genera Acupalpa Kröber, 1912 and Pipinnipons Winterton, 2001 (Diptera: Therevidae: Agapophytinae are revised. Twelve new species of Acupalpa are described, while Acupalpa imitans (White, 1915, comb. n. is transferred from Pipinnipons and Acupalpa albimanis (Kröber, 1914, comb. n. is transferred from Ectinorhynchus Macquart as a senior synonym of Acupalpa pollinosa Mann. The total number of species of Acupalpa is therefore increased to 19: A. albimanis (Kröber, comb. n., A. albitarsa Mann, A. boharti sp. n., A. divisa (Walker, A. dolichorhyncha sp. n., A. glossa sp. n., A. imitans (White, comb. n., A. irwini Winterton, A. melanophaeos sp. n., A. miaboolya sp. n., A. minuta sp. n., A. minutoides sp. n., A. notomelas sp. n., A. novayamarna sp. n., A. rostrata Kröber, A. semirufa Mann, A. westralica sp. n., A. yalgoo sp. n. and A. yanchep sp. n. Three new species of Pipinnipons are described, increasing the total number of species to five: P. chauncyvallis sp. n., P. fascipennis (Kröber, P. kampmeierae sp. n., P. kroeberi Winterton, and P. sphecoda sp. n. Pipinnipons and Acupalpa are rediagnosed in light of the new species presented herein and revised keys to species are included. A dichotomous key to genera of Australasian Therevidae is included. As an empirical example of cybertaxonomy, taxonomic descriptions were composed using a character matrix developed in Lucid Builder (in Structured Descriptive Data (SDD format to generate natural language descriptions supplemented by online specimen and image databases. Web resources are provided throughout the document including: a links to high resolution colour images of all species on Morphbank, b registration of authors, publications, taxon names and other nomenclatural acts in Zoobank, with assignment of Life Science Identifiers (LSIDs for each, c links to Genbank accession records for DNA sequences, and d assignment of LSIDs to specimen records with links

  8. Bathymetric preference of four major genera of rectilinear benthic ...

    Indian Academy of Sciences (India)

    (OMZ), both shallow marine (50–60 m water depth) and intermediate to deep water (150–1500 m water depth) ... depth differentiation among four rectilinear benthic foraminiferal genera presents the basic data for ..... in processing the samples.

  9. Contribution to the study of fungi in the genera Sparassis Fr. and Hericium Pers. in our forests

    OpenAIRE

    Karadžić Dragan

    2006-01-01

    Fungi in the genera Sparassis and Hericium cause wood decay. In the forests of Serbia and Montenegro 4 species are identified in the genus Sparassis, and 3 species in the genus Hericium. These fungi develop on physiologically weakened trees, recently killed trees and branch litter (windthrows, broken trees, logs, thick branches). Especially great damage in the stands of Pinus species can be caused by the fungus Sparassis crispa. This fungus colonizes the living trees through the root and caus...

  10. Emended description of the family Beijerinckiaceae and transfer of the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov.

    Science.gov (United States)

    Dedysh, Svetlana N; Haupt, Evan S; Dunfield, Peter F

    2016-08-01

    The family Beijerinckiaceae was circumscribed in 2005 to accommodate four genera of phylogenetically related alphaproteobacteria: Beijerinckia, Chelatococcus, Methylocella and Methylocapsa. Later, four additional genera, i.e. Methylovirgula, Methyloferula, Methylorosula and Camelimonas, were described and assigned to this family, which now accommodates 21 species with validly published names. Members of this family possess strikingly different lifestyles, including chemoheterotrophy, facultative methylotrophy, obligate methanotrophy and facultative methanotrophy. Levels of 16S rRNA gene sequence similarity among most of these bacteria range from 96 to 98 %, suggesting a common evolutionary origin. The genera Chelatococcus and Camelimonas, however, are not monophyletic with the other described genera based on 16S rRNA gene sequence phylogeny, and instead form a distant cluster more closely related to the Methylobacteriaceae. Physiologically these two genera also lack several properties common to the other Beijerinckiaceae. On the other hand, the genus Rhodoblastus, presently considered a member of the Bradyrhizobiaceae, affiliates with high confidence to the Beijerinckiaceae. Here, we propose to transfer the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov., and present an emended description of the family Beijerinckiaceae, including the genus Rhodoblastus.

  11. On The Etymology of Some Lichen Genera Names

    OpenAIRE

    Yavuz, Mustafa

    2016-01-01

    This study aims to investigate the etymology of some lichens’ genera names used in modern taxonomical botany. Growing on rocks, trees and even on soil, lichens are the only terrestrial cryptogamic organisms containing a fungal and an algal partner. Within this study, it has been focused to diagnose and improve an understanding of the similarities and differences between the names of lichen genera by comparing them in several languages. The etymological data collected during the study belongs ...

  12. A comparison of leaf crystal macropatterns in the two sister genera Piper and Peperomia (Piperaceae).

    Science.gov (United States)

    Horner, Harry T; Wanke, Stefan; Samain, Marie-Stéphanie

    2012-06-01

    This is the first large-scale study comparing leaf crystal macropatterns of the species-rich sister genera Piper and Peperomia. It focuses on identifying types of calcium oxalate crystals and their macropatterns in leaves of both genera. The Piper results are placed in a phylogenetic context to show evolutionary patterns. This information will expand knowledge about crystals and provide specific examples to help study their form and function. One example is the first-time observation of Piper crystal sand tumbling in chlorenchyma vacuoles. Herbarium and fresh leaves were cleared of cytoplasmic content and examined with polarizing microscopy to identify types of crystals and their macropatterns. Selected hydrated herbarium and fresh leaf punches were processed for scanning electron microscopy and x-ray elemental analysis. Vibratome sections of living Piper and Peperomia leaves were observed for anatomical features and crystal movement. Both genera have different leaf anatomies. Piper displays four crystal types in chlorenchyma-crystal sand, raphides, styloids, and druses, whereas Peperomia displays three types-druses, raphides, and prisms. Because of different leaf anatomies and crystal types between the genera, macropatterns are completely different. Crystal macropattern evolution in both is characterized by increasing complexity, and both may use their crystals for light gathering and reflection for efficient photosynthesis under low-intensity light environments. Both genera have different leaf anatomies, types of crystals and crystal macropatterns. Based on Piper crystals associated with photosynthetic tissues and low-intensity light, further study of their function and association with surrounding chloroplasts is warranted, especially active crystal movement.

  13. New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera

    Directory of Open Access Journals (Sweden)

    Erik van Nieukerken

    2016-10-01

    Full Text Available After finding distinct clades in a molecular phylogeny for Nepticulidae that could not be placed in any known genera and discovering clear apomorphic characters that define these clades, as well as a number of Neotropical species that could be placed in known genera but were undescribed, three new genera and nine new species are here described from the Neotropics: Stigmella gallicola van Nieukerken & Nishida, sp. n. reared from galls on Hampea appendiculata (Malvaceae in Costa Rica, representing the first example of a gall making Stigmella; S. schinivora van Nieukerken, sp. n. reared from leafmines on Schinus terebinthifolia (Anacardiaceae in Argentina, Misiones; S. costaricensis van Nieukerken & Nishida, sp. n. and S. intronia van Nieukerken & Nishida, sp. n. each from a single specimen collected the same night in Costa Rica, Parque Nacional Chirripó; S. molinensis van Nieukerken & Snyers, sp. n. reared from leafmines on Salix humboldtiana, Peru, Lima, the first Neotropical species of the Stigmella salicis group sensu stricto; Ozadelpha van Nieukerken, gen. n. with type species O. conostegiae van Nieukerken & Nishida, sp. n., reared from leafmines on Conostegia oerstediana (Melastomataceae from Costa Rica; Neotrifurcula van Nieukerken, gen. n. with type species N. gielisorum van Nieukerken, sp. n. from Chile; Hesperolyra van Nieukerken, gen. n.. with type species Fomoria diskusi Puplesis & Robinson, 2000; Hesperolyra saopaulensis van Nieukerken, sp. n., reared from an unidentified Myrtaceae, Sao Paulo, Brasil; and Acalyptris janzeni van Nieukerken & Nishida, sp. n. from Costa Rica, Guanacaste. Five new combinations are made: Ozadelpha ovata (Puplesis & Robinson, 2000, comb. n. and Ozadelpha guajavae (Puplesis & Diškus, 2002, comb. n., Hesperolyra diskusi (Puplesis & Robinson, 2000, comb. n., Hesperolyra molybditis (Zeller, 1877, comb. n. and Hesperolyra repanda (Puplesis & Diškus, 2002, comb. n. Three specimens are briefly described, but

  14. New taxa, including three new genera show uniqueness of Neotropical Nepticulidae (Lepidoptera)

    Science.gov (United States)

    van Nieukerken, Erik J.; Doorenweerd, Camiel; Nishida, Kenji; Snyers, Chris

    2016-01-01

    Abstract After finding distinct clades in a molecular phylogeny for Nepticulidae that could not be placed in any known genera and discovering clear apomorphic characters that define these clades, as well as a number of Neotropical species that could be placed in known genera but were undescribed, three new genera and nine new species are here described from the Neotropics: Stigmella gallicola van Nieukerken & Nishida, sp. n. reared from galls on Hampea appendiculata (Malvaceae) in Costa Rica, representing the first example of a gall making Stigmella; Stigmella schinivora van Nieukerken, sp. n. reared from leafmines on Schinus terebinthifolia (Anacardiaceae) in Argentina, Misiones; Stigmella costaricensis van Nieukerken & Nishida, sp. n. and Stigmella intronia van Nieukerken & Nishida, sp. n. each from a single specimen collected the same night in Costa Rica, Parque Nacional Chirripó; Stigmella molinensis van Nieukerken & Snyers, sp. n. reared from leafmines on Salix humboldtiana, Peru, Lima, the first Neotropical species of the Stigmella salicis group sensu stricto; Ozadelpha van Nieukerken, gen. n. with type species Ozadelpha conostegiae van Nieukerken & Nishida, sp. n., reared from leafmines on Conostegia oerstediana (Melastomataceae) from Costa Rica; Neotrifurcula van Nieukerken, gen. n. with type species Neotrifurcula gielisorum van Nieukerken, sp. n. from Chile; Hesperolyra van Nieukerken, gen. n.. with type species Fomoria diskusi Puplesis & Robinson, 2000; Hesperolyra saopaulensis van Nieukerken, sp. n., reared from an unidentified Myrtaceae, Sao Paulo, Brasil; and Acalyptris janzeni van Nieukerken & Nishida, sp. n. from Costa Rica, Guanacaste. Five new combinations are made: Ozadelpha ovata (Puplesis & Robinson, 2000), comb. n. and Ozadelpha guajavae (Puplesis & Diškus, 2002), comb. n., Hesperolyra diskusi (Puplesis & Robinson, 2000), comb. n., Hesperolyra molybditis (Zeller, 1877), comb. n. and Hesperolyra repanda (Puplesis & Diškus, 2002), comb. n

  15. Further studies on the Pselaphodes complex of genera from China (Coleoptera, Staphylinidae, Pselaphinae).

    Science.gov (United States)

    Yin, Zi-Wei; Hlaváč, Peter; Li, Li-Zhen

    2013-01-01

    New data on the Pselaphodes complex of genera (Pselaphitae: Tyrini) from China is presented. The generic limits of Labomimus Sharp and Pselaphodes Westwood are discussed and expanded. A revised key to the genera of the Pselaphodes complex is provided. New geographic evidence suggests that previously believed wide-spread species Pselaphodes tianmuensis Yin, Li & Zhao contains a number of related species, resulting in a division of the species to nine separate taxa. Fourteen new species belonging to three genera are diagnosed, described and illustrated: Dayao emeiensis Yin & Li, sp. n. (Sichuan), Labomimus fimbriatus Yin & Hlaváč, sp. n. (Yunnan), Labomimus jizuensis Yin & Hlaváč, sp. n. (Yunnan), Labomimus simplicipalpus Yin & Hlaváč, sp. n. (Sichuan), Pselaphodes anhuianus Yin & Li, sp. n. (Anhui), Pselaphodes daii Yin & Hlaváč, sp. n. (Sichuan), Pselaphodes grebennikovi Yin & Hlaváč, sp. n. (Yunnan), Pselaphodes hainanensis Yin & Li, sp. n. (Hainan), Pselaphodes kuankuoshuiensis Yin & Li, sp. n. (Guizhou), Pselaphodes longilobus Yin & Hlaváč, sp. n. (Hunbei, Yunnan), Pselaphodes monoceros Yin & Hlaváč, sp. n. (Xizang), Pselaphodes pengi Yin & Li, sp. n. (Sichuan), Pselaphodes tiantongensis Yin & Li, sp. n. (Zhejiang) and Pselaphodes wrasei Yin & Li, sp. n. (Yunnan). Labomimus sichuanicus Hlaváč, Nomura & Zhou (Sichuan) is redescribed and illustrated based on a paratype and the material from the type locality. Two recently described species, Pselaphodes tibialis Yin & Li (Yunnan), and Pselaphodes venustus Yin & Li (Yunnan), are transferred to Labomimus (comb. n.) due to the presence of a median metaventral fovea. New locality data is provided for Pselaphodes aculeus Yin, Li & Zhao (Anhui, Fujian, Guangxi, Hainan, Yunnan), Pselaphodes maoershanus Yin & Li (Guangxi, Guizhou), Pselaphodes tianmuensis (Zhejiang, Anhui, Fujian, Jiangxi, Guangxi) and Pselaphodes pectinatus Yin, Li & Zhao (Hainan), with the aedeagus newly illustrated for the latter species.

  16. Dioecy does not consistently accelerate or slow lineage diversification across multiple genera of angiosperms.

    Science.gov (United States)

    Sabath, Niv; Goldberg, Emma E; Glick, Lior; Einhorn, Moshe; Ashman, Tia-Lynn; Ming, Ray; Otto, Sarah P; Vamosi, Jana C; Mayrose, Itay

    2016-02-01

    Dioecy, the sexual system in which male and female organs are found in separate individuals, allows greater specialization for sex-specific functions and can be advantageous under various ecological and environmental conditions. However, dioecy is rare among flowering plants. Previous studies identified contradictory trends regarding the relative diversification rates of dioecious lineages vs their nondioecious counterparts, depending on the methods and data used. We gathered detailed species-level data for dozens of genera that contain both dioecious and nondioecious species. We then applied a probabilistic approach that accounts for differential speciation, extinction, and transition rates between states to examine whether there is an association between dioecy and lineage diversification. We found a bimodal distribution, whereby dioecious lineages exhibited higher diversification in certain genera but lower diversification in others. Additional analyses did not uncover an ecological or life history trait that could explain a context-dependent effect of dioecy on diversification. Furthermore, in-depth simulations of neutral characters demonstrated that such bimodality is also found when simulating neutral characters across the observed trees. Our analyses suggest that - at least for these genera with the currently available data - dioecy neither consistently places a strong brake on diversification nor is a strong driver. © 2015 The Authors. New Phytologist © 2015 New Phytologist Trust.

  17. Three species of Microphthalmus (Polychaeta) new to The Netherlands

    NARCIS (Netherlands)

    Wolff, W.J.

    1969-01-01

    INTRODUCTION The excellent monograph by Westheide (1967) of the hesionid genera Hesionides and Microphthalmus provided the means to study these genera in The Netherlands. Until now no species belonging to either of these genera have been recorded from this country. Nevertheless, several species of

  18. Hepatozoon infection prevalence in four snake genera: influence of diet, prey parasitemia levels, or parasite type?

    Science.gov (United States)

    Tomé, Beatriz; Maia, João P M C; Harris, D James

    2012-10-01

    Hepatozoon spp. (Apicomplexa: Haemogregarinidae) are the most commonly reported hemoparasites from snakes. Of over 300 Hepatozoon species identified, more than 120 were described from snakes. However, recent genetic assessments have found Hepatozoon lineages recovered from both prey and predators, indicating that diet may play an important role in the infection of final vertebrate hosts. Here 4 different snake genera with different diets were assessed. Hepatozoon spp. prevalence varied greatly between the genera, but only lineages already identified from potential prey, i.e., gecko and lacertid lizards, were recovered from the snakes. Interestingly, the Hepatozoon spp. lineage known from geckos was the most common in the snakes, but this does not reflect their diet. Higher parasitemia levels, reported for some geckos relative to lacertid lizards, may play a role. Alternatively, this lineage may be more effective at parasitizing snakes or may occur, despite being unrecorded, in other vertebrate groups consumed by snakes.

  19. The diets of Hispaniolan colubrid snakes : I. Introduction and prey genera.

    Science.gov (United States)

    Henderson, Robert W

    1984-05-01

    Approximately 1590 Hispaniolan colubrid snakes representing six genera and eight species were examined for prey remains (Alsophis cantherigerus, Antillophis parvifrons, Darlingtonia haetiana, Hypsirhynchus ferox, Ialtris dorsalis, Uromacer catesbyi, U. frenatus, and U. oxyrhynchus). The snakes were collected at many localities over a span of 80 years.Of 426 prey items, 77.9% were lizards (of which 69.6% were anoles), 19% frogs, 2.6% birds and mammals, and 0.5% other snakes. Darlingtonia was the only snake that did not exploit lizards; it fed exclusively on Eleutherodactylus frogs, including egg clutches. Disregarding Darlingtonia, there is no size class of Hispaniolan colubrids between 20-90 cm SVL that does not prey primarily on Anolis. Certain prey genera are added to, or deleted from, diets depending on snake size, but the data suggest that snake SVL alone does little to dictate what prey genera (or groups) are eaten. Shannon-Wiener values (H') indicate that Darlingtonia has the narrowest trophic niche, while Alsophis and Ialtris have the widest. Values of H' are not correlated with snake SVL, but highly significant (Peats diurnally active (anoles) and diurnally quiescent (hylid frogs) prey with almost equal frequency.Within Maglio's cantherigerus species assemblage, in which an Alsophis cantherigerus-like snake was ancestral to the other species, and in which longsnouted Uromacer are the most morphologically derived, there is an obvious trend toward trophic specialization on Hispaniola. The West Indies have provided an ideal natural laboratory for the investigation of many aspects of vertebrate ecology, and an arena in which to test theories of island biogeography. The most extensively studied West Indian vertebrates have been the lizards of the iguanid genus Anolis. Conversely, the ecology of West Indian snakes has been largely ignored. This is surprising in light of the fact that much has been written about Anolis predation, but little has been written about

  20. A revision of the genera Salpa Forskål, 1775, Pegea Savigny, 1816, and Ritteriella Metcalf, 1919 (Tunicata, Thaliacea)

    NARCIS (Netherlands)

    Soest, van R.W.M.

    1974-01-01

    Based on material from all oceans the Salp genera Salpa, Pegea and Ritteriella are revised. Particularly the study of the number of muscle fibres has shown that Salpa maxima var. tuberculata, the subspecies Pegea confoederala bicaudata and the generally synonymized species Ritteriella retracta are

  1. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera

    Science.gov (United States)

    Sun, Zhihong; Harris, Hugh M. B.; McCann, Angela; Guo, Chenyi; Argimón, Silvia; Zhang, Wenyi; Yang, Xianwei; Jeffery, Ian B; Cooney, Jakki C.; Kagawa, Todd F.; Liu, Wenjun; Song, Yuqin; Salvetti, Elisa; Wrobel, Agnieszka; Rasinkangas, Pia; Parkhill, Julian; Rea, Mary C.; O'Sullivan, Orla; Ritari, Jarmo; Douillard, François P.; Paul Ross, R.; Yang, Ruifu; Briner, Alexandra E.; Felis, Giovanna E.; de Vos, Willem M.; Barrangou, Rodolphe; Klaenhammer, Todd R.; Caufield, Page W.; Cui, Yujun; Zhang, Heping; O'Toole, Paul W.

    2015-01-01

    Lactobacilli are a diverse group of species that occupy diverse nutrient-rich niches associated with humans, animals, plants and food. They are used widely in biotechnology and food preservation, and are being explored as therapeutics. Exploiting lactobacilli has been complicated by metabolic diversity, unclear species identity and uncertain relationships between them and other commercially important lactic acid bacteria. The capacity for biotransformations catalysed by lactobacilli is an untapped biotechnology resource. Here we report the genome sequences of 213 Lactobacillus strains and associated genera, and their encoded genetic catalogue for modifying carbohydrates and proteins. In addition, we describe broad and diverse presence of novel CRISPR-Cas immune systems in lactobacilli that may be exploited for genome editing. We rationalize the phylogenomic distribution of host interaction factors and bacteriocins that affect their natural and industrial environments, and mechanisms to withstand stress during technological processes. We present a robust phylogenomic framework of existing species and for classifying new species. PMID:26415554

  2. Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera.

    Science.gov (United States)

    Sun, Zhihong; Harris, Hugh M B; McCann, Angela; Guo, Chenyi; Argimón, Silvia; Zhang, Wenyi; Yang, Xianwei; Jeffery, Ian B; Cooney, Jakki C; Kagawa, Todd F; Liu, Wenjun; Song, Yuqin; Salvetti, Elisa; Wrobel, Agnieszka; Rasinkangas, Pia; Parkhill, Julian; Rea, Mary C; O'Sullivan, Orla; Ritari, Jarmo; Douillard, François P; Paul Ross, R; Yang, Ruifu; Briner, Alexandra E; Felis, Giovanna E; de Vos, Willem M; Barrangou, Rodolphe; Klaenhammer, Todd R; Caufield, Page W; Cui, Yujun; Zhang, Heping; O'Toole, Paul W

    2015-09-29

    Lactobacilli are a diverse group of species that occupy diverse nutrient-rich niches associated with humans, animals, plants and food. They are used widely in biotechnology and food preservation, and are being explored as therapeutics. Exploiting lactobacilli has been complicated by metabolic diversity, unclear species identity and uncertain relationships between them and other commercially important lactic acid bacteria. The capacity for biotransformations catalysed by lactobacilli is an untapped biotechnology resource. Here we report the genome sequences of 213 Lactobacillus strains and associated genera, and their encoded genetic catalogue for modifying carbohydrates and proteins. In addition, we describe broad and diverse presence of novel CRISPR-Cas immune systems in lactobacilli that may be exploited for genome editing. We rationalize the phylogenomic distribution of host interaction factors and bacteriocins that affect their natural and industrial environments, and mechanisms to withstand stress during technological processes. We present a robust phylogenomic framework of existing species and for classifying new species.

  3. A three-parameter model for classifying anurans into four genera based on advertisement calls.

    Science.gov (United States)

    Gingras, Bruno; Fitch, William Tecumseh

    2013-01-01

    The vocalizations of anurans are innate in structure and may therefore contain indicators of phylogenetic history. Thus, advertisement calls of species which are more closely related phylogenetically are predicted to be more similar than those of distant species. This hypothesis was evaluated by comparing several widely used machine-learning algorithms. Recordings of advertisement calls from 142 species belonging to four genera were analyzed. A logistic regression model, using mean values for dominant frequency, coefficient of variation of root-mean square energy, and spectral flux, correctly classified advertisement calls with regard to genus with an accuracy above 70%. Similar accuracy rates were obtained using these parameters with a support vector machine model, a K-nearest neighbor algorithm, and a multivariate Gaussian distribution classifier, whereas a Gaussian mixture model performed slightly worse. In contrast, models based on mel-frequency cepstral coefficients did not fare as well. Comparable accuracy levels were obtained on out-of-sample recordings from 52 of the 142 original species. The results suggest that a combination of low-level acoustic attributes is sufficient to discriminate efficiently between the vocalizations of these four genera, thus supporting the initial premise and validating the use of high-throughput algorithms on animal vocalizations to evaluate phylogenetic hypotheses.

  4. 18S rDNA phylogeny of lamproderma and allied genera (Stemonitales, Myxomycetes, Amoebozoa.

    Directory of Open Access Journals (Sweden)

    Anna Maria Fiore-Donno

    Full Text Available The phylogenetic position of the slime-mould genus Lamproderma (Myxomycetes, Amoebozoa challenges traditional taxonomy: although it displays the typical characters of the order Stemonitales, it appears to be sister to Physarales. This study provides a small subunit (18S or SSU ribosomal RNA gene-based phylogeny of Lamproderma and its allies, with new sequences from 49 specimens in 12 genera. We found that the order Stemonitales and Lamproderma were both ancestral to Physarales and that Lamproderma constitutes several clades intermingled with species of Diacheopsis, Colloderma and Elaeomyxa. We suggest that these genera may have evolved from Lamproderma by multiple losses of fruiting body stalks and that many taxonomic revisions are needed. We found such high genetic diversity within three Lamproderma species that they probably consist of clusters of sibling species. We discuss the contrasts between genetic and morphological divergence and implications for the morphospecies concept, highlighting the phylogenetically most reliable morphological characters and pointing to others that have been overestimated. In addition, we showed that the first part (~600 bases of the SSU rDNA gene is a valuable tool for phylogeny in Myxomycetes, since it displayed sufficient variability to distinguish closely related taxa and never failed to cluster together specimens considered of the same species.

  5. Kalapuya brunnea gen. & sp. nov. and its relationship to the other sequestrate genera in Morchellaceae.

    Science.gov (United States)

    Trappe, Matthew J; Trappe, James M; Bonito, Gregory M

    2010-01-01

    Kalapuya is described as a new, monotypic truffle genus in the Morchellaceae known only from the Pacific northwestern United States. Its relationship to other hypogeous genera within Morchellaceae is explored by phylogenetic analysis of the ribosomal LSU and EF1alpha protein coding region. The type species, K. brunnea, occurs in Douglas-fir forests up to about 50 y old on the west slope of the Cascade Range in Oregon and in the Coastal Ranges of Oregon and northern California. It has a roughened, warty, reddish brown to brown peridium, a solid whitish gleba that develops grayish brown mottling as the spores mature, and produces a cheesy-garlicky odor at maturity. Its smooth, ellipsoid spores resemble those of Morchella spp. but are much larger. The four hypogeous genera known in the Morchellaceae, Kalapuya, Fischerula, Imaia and Leucangium, are distinct from the epigeous genera Morchella and Verpa, but it is uncertain whether they resulted from a single transition to a hypogeous fruiting habit or from multiple independent transitions. Kalapuya, locally known as the Oregon brown truffle, has been commercially harvested for culinary use.

  6. Symbiotic effectiveness of rhizobial mutualists varies in interactions with native Australian legume genera.

    Directory of Open Access Journals (Sweden)

    Peter H Thrall

    Full Text Available BACKGROUND AND OBJECTIVES: Interactions between plants and beneficial soil organisms (e.g. rhizobial bacteria, mycorrhizal fungi are models for investigating the ecological impacts of such associations in plant communities, and the evolution and maintenance of variation in mutualisms (e.g. host specificity and the level of benefits provided. With relatively few exceptions, variation in symbiotic effectiveness across wild host species is largely unexplored. METHODS: We evaluated these associations using representatives of several legume genera which commonly co-occur in natural ecosystems in south-eastern Australia and an extensive set of rhizobial strains isolated from these hosts. These strains had been previously assigned to specific phylotypes on the basis of molecular analyses. In the first of two inoculation experiments, the growth responses of each host species was evaluated with rhizobial strains isolated from that species. The second experiment assessed performance across genera and the extent of host specificity using a subset of these strains. RESULTS: While host growth responses to their own (sympatric isolates varied considerably, rhizobial phylotype was a significant predictor of symbiotic performance, indicating that bacterial species designations on the basis of molecular markers have ecological importance. Hosts responded in qualitatively different ways to sympatric and allopatric strains of rhizobia, ranging from species with a clear preference for their own strains, to those that were broad generalists, through to species that grew significantly better with allopatric strains. CONCLUSION: Theory has focused on trade-offs between the provision of benefits and symbiont competitive ability that might explain the persistence of less beneficial strains. However, differences in performance among co-occurring host species could also drive such patterns. Our results thus highlight the likely importance of plant community structure in

  7. Flora of St Katherine Protectorate: key to families and genera ...

    African Journals Online (AJOL)

    Flora of St Katherine Protectorate: key to families and genera. Wafaa Kamel, Magda Gazar, Samy Zalat, Francis Gilbert. Abstract. Egyptian Journal of Natural History Vol.1 1999: 1-39. Full Text: EMAIL FREE FULL TEXT EMAIL FREE FULL TEXT · DOWNLOAD FULL TEXT DOWNLOAD FULL TEXT.

  8. The genera Rhoptropus and Phelsuma (Reptilia: Gekkonidae) in ...

    African Journals Online (AJOL)

    The genus Rhoplropella Hewitt, 1937 is shown to be a junior synonym of Phelsuma Gray, 1825 and the genera Phelsumaand Rhoplropus Peters, 1869 are compared. It is pointed out that Phelsuma ocettata shows a great deal of convergence with Rhoplropus but that both of these forms exhibit their own distinctive derived ...

  9. Taxonomic notes on the afrotropical genera Hapalogenius Hagedorn, Hylesinopsis Eggers, and Rhopalopselion Hagedorn (Coleoptera, Curculionidae, Scolytinae

    Directory of Open Access Journals (Sweden)

    Roger Beaver

    2010-09-01

    Full Text Available Taxonomic confusion among the afrotropical scolytine genera Hapalogenius Hagedorn, Hylesinopsis Eggers and Rhopalopselion Hagedorn, and their synonyms is discussed with especial reference to the catalogues of Wood and Bright (1992, and Alonso-Zarazaga and Lyal (2009. A key is given to separate the three genera recognised, and the species considered to be included in each genus are listed. Hylesinopsis is resurrected from synonymy with Hapalogenius, and shown not to be closely related to it. Chilodendron Schedl is considered to be a synonym of Hylesinopsis and not of Xylechinus Chapuis. The following new synonymy is proposed at specific level: Hapalogenius africanus (Eggers (= Hapalogenius lesnei Eggers, = Metahylesinus brincki Schedl; Hapalogenius fuscipennis (Chapuis (= Hapalogenius bimaculatus Eggers; Hapalogenius oblongus (Eggers (= Metahylesinus striatus Schedl; Hylesinopsis fasciata (Hagedorn (= Kissophagus punctatus Eggers; Phrixosoma niger Eggers (= Hapalogenius niger Schedl. The following species are returned to Hylesinopsis from Hapalogenius to which they were transferred by Alonso-Zarazaga and Lyal (2009: Hylesinopsis alluaudi (Lepesme, H. angolensis (Schedl, H. arabiae (Schedl, H. atra (Nunberg, H. confusa (Eggers, H. decellei (Nunberg, H. dubia Eggers, H. emarginata (Nunberg, H. fasciata (Hagedorn, H. ficus (Schedl, H. granulata (Lepesme, H. hirsuta (Schedl, H. joveri (Schedl, H. pauliani (Lepesme, H. punctata (Eggers, H. saudiarabiae (Schedl. The following new combination is given: Hylesinopsis leprosula (Browne from Cryphalus Erichson. New distributional records are given for some species.

  10. Molecular phylogeny of the lionfish genera Dendrochirus and Pterois (Scorpaenidae, Pteroinae) based on mitochondrial DNA sequences.

    Science.gov (United States)

    Kochzius, Marc; Söller, Rainer; Khalaf, Maroof A; Blohm, Dietmar

    2003-09-01

    This study investigates the molecular phylogeny of seven lionfishes of the genera Dendrochirus and Pterois. MP, ML, and NJ phylogenetic analysis based on 964 bp of partial mitochondrial DNA sequences (cytochrome b and 16S rDNA) revealed two main clades: (1) "Pterois" clade (Pterois miles and Pterois volitans), and (2) "Pteropterus-Dendrochirus" clade (remainder of the sampled species). The position of Dendrochirus brachypterus either basal to the main clades or in the "Pteropterus-Dendrochirus" clade cannot be resolved. However, the molecular phylogeny did not support the current separation of the genera Pterois and Dendrochirus. The siblings P. miles and P. volitans are clearly separated and our results support the proposed allopatric or parapatric distribution in the Indian and Pacific Ocean. However, the present analysis cannot reveal if P. miles and P. volitans are separate species or two populations of a single species, because the observed separation in different clades can be either explained by speciation or lineage sorting. Molecular clock estimates for the siblings P. miles and P. volitans suggest a divergence time of 2.4-8.3 mya, which coincide with geological events that created vicariance between populations of the Indian and Pacific Ocean.

  11. Revision of the Oriental genera of Agathidinae (Hymenoptera, Braconidae with an emphasis on Thailand and interactive keys to genera published in three different formats

    Directory of Open Access Journals (Sweden)

    Michael Sharkey

    2009-09-01

    Full Text Available The genera of Oriental Agathidinae are revised and a fully illustrated dichotomous key is presented. New generic concepts are proposed for Bassus Fabricius, 1804 and Hypsostypos Baltazar, 1963. Bassus is restricted to a clade with an Old World distribution and the remaining members are divided amongst the resurrected genera Camptothlipsis Enderlein, 1920, Lytopylus Förster, 1862, and Therophilus Wesmael, 1837. The concept of Hypsostypos is restricted and the new genus Amputostypos Sharkey, gen. n. is proposed to include species formerly included in Hypsostypos that do not have raised antennal bases. Troticus Brullé, 1846 is reported from the Oriental region for the first time. Eighteen genera are recognized for Thailand and neighboring areas, i.e., Agathis Latreille, 1804, Amputostypos, Aneurobracon Brues, 1930, Bassus, Biroia Szépligeti, 1900, Braunsia Kriechbaumer, 1894, Camptothlipsis, Coccygidium Saussure, 1892, Cremnops Förster, 1862, Disophrys Förster, 1862, Earinus Wesmael, 1837, Euagathis Szépligeti, 1900, Gryochus Enderlein, 1920, Hypsostypos, Lytopylus Förster, 1862, Therophilus, Cremnoptoides van Achterberg & Chen, 2004, and Troticus. Identification keys to the genera are provided as a standard textual dichotomous key, as well as online keys in three different formats (conventional dichotomous, DELTA/Intkey, Lucid, and MX to enable users to choose their prefered platform and to allow direct comparisons of the technologies for producing online keys. Publication of underlying data (data matrices, character states table, and images under the OpenDataCommons license (ODbl (http://www.opendatacommons.org/licenses/odbl/1.0/ for DELTA/Intkey files (doi: 10.3897/zookeys.21.271.app.1.ik, primary DELTA files (10.3897/zookeys.21.271.app.2.ik Lucid3 (LIF3 and Lucid SDD key data files (doi: 10.3897/zookeys.21.271.app.3.ik and MX MySQL database files (doi: 10.3897/zookeys.21.271.app.4.ik allows future workers to edit keys and to add newly

  12. A guide to the larvae of the Nearctic Diamesinae (Diptera; Chironomidae), the genera Boreoheptagyia, Protanypus, Diamesa, and Pseudokiefferiella

    Science.gov (United States)

    Doughman, J.S.

    1983-01-01

    The subfamily Diamesinae consists of the monogeneric tribes Boreoheptagnini and Parotanypini and the diverse tribe Diamesini with seven genera. These midges are prevalent in clean, cool arctic-alpine waters, but less abundant in the lowlands. Keys and descriptions herein to the known species of these nine genera may prove valuable in the biomonitoring of these cool aquatic habitats. The larvae of Protanypus saetheri Wiederholm is described for the first time. Identification is based upon the absence of other species in the collection area. Examination of a series of larval D. incallida Walker collected in Wyoming and a review of pertinent literature shows that there is considerable variation in the procerus and the labral armature. Because these characters are often used in keys, this variability can lead to misidentification of less recognizable species of Diamesa. (USGS)

  13. Review of amphipods of the Melita group (Amphipoda: Melitidae) from the coastal waters of Sakhalin Island (Far East of Russia). II. Genera Quasimelita Jarrett & Bousfield, 1996 and Melitoides Gurjanova, 1934.

    Science.gov (United States)

    Labay, Vjacheslav S

    2014-10-01

    Based on new material, three new species of the genus Quasimelita are described: Q. tolyza sp. nov., Q. jarettii sp. nov. and Q. serraticoxae sp. nov. from northern shelf of Sakhalin Island and contiguous area. The new species of the genus Melitoides, M. kawaii sp. nov. is described from north-east shelf of Sakhalin Island. Keys to the world species of genera Quasimelita and Melitoides are provided. Cladistic analysis of morphological relationships within genera Quasimelita and Melitoides are implemented.

  14. The genera Cosmopterix Hübner and Pebobs Hodges in the New World with special attention to the Neotropical fauna (Lepidoptera: Cosmopterigidae)

    NARCIS (Netherlands)

    Koster, J.C.

    2010-01-01

    The genera Cosmopterix Hübner, [1825] and Pebobs Hodges, 1978 (Cosmopterigidae) of the New World are revised, for the Neotropical fauna for the first time. A total of 102 species is recognized and 49 species are described as new: Cosmopterix adrastea spec. nov., C. amalthea spec. nov., C. ananke

  15. Two new genera of metalmark butterflies of North and Central America (Lepidoptera, Riodinidae

    Directory of Open Access Journals (Sweden)

    Marysol Trujano-Ortega

    2018-01-01

    Full Text Available Two new genera of Riodinidae (Insecta: Lepidoptera are described, Neoapodemia Trujano-Ortega, gen. n. (Neoapodemia nais (W. H. Edwards, 1876, comb. n., N. chisosensis Freeman, 1964, comb. n. and Plesioarida Trujano-Ortega & García-Vázquez, gen. n. (Plesioarida palmerii palmerii (W. H. Edwards, 1870, comb. n., P. palmerii arizona (Austin, [1989], comb. n., P. palmerii australis (Austin, [1989], comb. n., P. hepburni hepburni (Godman & Salvin, 1886, comb. n., P. hepburni remota (Austin, 1991, comb. n., P. murphyi (Austin, [1989], comb. n., P. hypoglauca hypoglauca (Godman & Salvin, 1878, comb. n., P. hypoglauca wellingi (Ferris, 1985, comb. n., P. walkeri (Godman & Salvin, 1886, comb. n., P. selvatica (De la Maza & De la Maza, 2017, comb. n.. Neoapodemia Trujano-Ortega, gen. n. is distributed in the southwestern USA and northeastern Mexico, while Plesioarida Trujano-Ortega & García-Vázquez, gen. n. is present from the southern USA to Central America. Species of these genera were previously classified as Apodemia C. Felder & R. Felder but molecular and morphological evidence separate them as new taxa. Morphological diagnoses and descriptions are provided for both new genera, including the main distinctive characters from labial palpi, prothoracic legs, wing venation and genitalia, as well as life history traits. A molecular phylogeny of one mitochondrial gene (COI and two nuclear genes (EF-1a and wg are also presented of most species of Apodemia, Neoapodemia Trujano-Ortega, gen. n., Plesioarida Trujano-Ortega & García-Vázquez, gen. n., and sequences of specimens from all tribes of Riodinidae. We compare the characters of Apodemia, Neoapodemia Trujano-Ortega, gen. n. and Plesioarida Trujano-Ortega & García-Vázquez, gen. n. and discuss the differences that support the description of these new taxa. This is a contribution to the taxonomy of the Riodinidae of North America of which the generic diversity is greater than previously recognized.

  16. Cytological studies in Four Endemic Genera of Apiaceae from India

    Directory of Open Access Journals (Sweden)

    Kumar Vinod C. Gosavi

    2016-11-01

    Full Text Available The family Apiaceae comprises 428 genera worldwide, of which 68 are represented in India. Karnataka P.K. Mukh. & Constance, Pinda P.K. Mukh. & Constance, Polyzygus Dalzell, Sivadasania N. Mohanan & Pimenov and Vanasushava P.K. Mukh. & Constance are endemic genera to the country. The present communication is an attempt to provide chromosome counts and basic karyomorphology of Karnataka, Pinda, Polyzygus and Vanasushava. Somatic chromosome counts 2n = 22 and meiotic chromosome counts n = 11 are reported for the first time in Karnataka and Pinda while in Polyzygus 2n = 36 and in Vanasushava 2n = 44 are reported as new cytotypes in present investigation. Karyomophologically Pinda and Vanasushava showed affinities with Heracleum L. while Polyzygus showed advanced karyotype symmetry.

  17. Somatic Embryogenesis in Two Orchid Genera (Cymbidium, Dendrobium).

    Science.gov (United States)

    da Silva, Jaime A Teixeira; Winarto, Budi

    2016-01-01

    The protocorm-like body (PLB) is the de facto somatic embryo in orchids. Here we describe detailed protocols for two orchid genera (hybrid Cymbidium Twilight Moon 'Day Light' and Dendrobium 'Jayakarta', D. 'Gradita 31', and D. 'Zahra FR 62') for generating PLBs. These protocols will most likely have to be tweaked for different cultivars as the response of orchids in vitro tends to be dependent on genotype. In addition to primary somatic embryogenesis, secondary (or repetitive) somatic embryogenesis is also described for both genera. The use of thin cell layers as a sensitive tissue assay is outlined for hybrid Cymbidium while the protocol outlined is suitable for bioreactor culture of D. 'Zahra FR 62'.

  18. Summing over all genera for d>1: A toy model

    International Nuclear Information System (INIS)

    Ambjoern, J.; Durhuus, B.; Jonsson, T.

    1990-04-01

    We consider a reduced model of discretized random surfaces which is believed to be a good approximation to the standard theory of discretized random surfaces for large dimensions d. In this model we observe multicritical behaviour. The relation between internal observables, in the sense of two-dimensional gravity, and external observables, in the sense of string theory, can be studied in detail. Furthermore, it is possible to perform explicitly the summation over all genera in this model. (orig.)

  19. Comprehensive secondary structure elucidation of four genera of the family Pospiviroidae.

    Directory of Open Access Journals (Sweden)

    Tamara Giguère

    Full Text Available Viroids are small, circular, single stranded RNA molecules that infect plants. Since they are non-coding, their structures play a critical role in their life cycles. To date, little effort has been spend on elucidating viroid structures in solution due to both the experimental difficulties and the time-consuming nature of the methodologies implicated. Recently, the technique of high-throughput selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE was adapted for the probing of the members of family Avsunviroidae, all of whom replicate in the chloroplast and demonstrate ribozyme activity. In the present work, twelve viroid species belonging to four different genera of the family Pospiviroidae, whose members are characterized by the presence of a central conserved region (CCR and who replicate in nucleus of the host, were probed. Given that the structures of five distinct viroid species from the family Pospiviroidae have been previously reported, an overview of the different structural characteristics for all genera and the beginning of a manual classification of the different viroids based on their structural features are presented here.

  20. Pollen storages in nests of bees of the genera Partamona, Scaura and Trigona (Hymenoptera, Apidae

    Directory of Open Access Journals (Sweden)

    André Rodrigo Rech

    2011-09-01

    Full Text Available Bees and angiosperms established a mutualistic relationship along the evolutionary time. The aim of this study is to contribute for the understanding of this relation analyzing pollen stored by stingless bees colonies distributed along the Rio Negro. Fourteen species of Meliponini from the genera Partamona, Scaura, and Trigona were studied with regard to the content of pollen pots. The pollen material was removed from the pollen pots, homogenized, and prepared according to the usual acetolysis technique. The overlap of the trophic niche and the grouping of species by similarity of niches was calculated. The identification revealed 78 pollen types belonging to 36 families, being 37 types attractive and 16 considered as promoters of a temporary specialization event. With the results, it was possible to indicate a list of important plants for meliponiculture in the Amazon.

  1. Evolution in the block: common elements of 5S rDNA organization and evolutionary patterns in distant fish genera.

    Science.gov (United States)

    Campo, Daniel; García-Vázquez, Eva

    2012-01-01

    The 5S rDNA is organized in the genome as tandemly repeated copies of a structural unit composed of a coding sequence plus a nontranscribed spacer (NTS). The coding region is highly conserved in the evolution, whereas the NTS vary in both length and sequence. It has been proposed that 5S rRNA genes are members of a gene family that have arisen through concerted evolution. In this study, we describe the molecular organization and evolution of the 5S rDNA in the genera Lepidorhombus and Scophthalmus (Scophthalmidae) and compared it with already known 5S rDNA of the very different genera Merluccius (Merluccidae) and Salmo (Salmoninae), to identify common structural elements or patterns for understanding 5S rDNA evolution in fish. High intra- and interspecific diversity within the 5S rDNA family in all the genera can be explained by a combination of duplications, deletions, and transposition events. Sequence blocks with high similarity in all the 5S rDNA members across species were identified for the four studied genera, with evidences of intense gene conversion within noncoding regions. We propose a model to explain the evolution of the 5S rDNA, in which the evolutionary units are blocks of nucleotides rather than the entire sequences or single nucleotides. This model implies a "two-speed" evolution: slow within blocks (homogenized by recombination) and fast within the gene family (diversified by duplications and deletions).

  2. A QUICK KEY TO THE SUBFAMILIES AND GENERA OF ANTS OF THE SAVANNAH RIVER SITE

    Energy Technology Data Exchange (ETDEWEB)

    Martin, D

    2007-09-04

    This taxonomic key was devised to support development of a Rapid Bioassessment Protocol using ants at the Savannah River Site. The emphasis is on 'rapid' and, because the available keys contained a very large number of genera not known to occur at the Savannah River Site, we found that the available keys were unwieldy. Because these keys contained many more genera than we would ever encounter and because this larger number of genera required more couplets in the key and often required examination of characters that are difficult to assess without higher magnifications (60X or higher), more time was required to process samples. In developing this set of keys I emphasized character states that are easier for nonspecialists to recognize. I recognize that the character sets used may lead to some errors but I believe that the error rate will be small and, for the purpose of rapid bioassessment, this error rate will be acceptable provided that overall sample sizes are adequate. Oliver and Beattie (1996a, 1996b) found that for rapid assessment of biodiversity the same results were found when identifications were done to morphospecies by people with minimal expertise as when the same data sets were identified by subject matter experts. Basset et al. (2004) concluded that it was not as important to correctly identify all species as it was to be sure that the study included as many functional groups as possible. If your study requires high levels of accuracy, it is highly recommended that, when you key out a specimen and have any doubts concerning the identification, you should refer to keys in Bolton (1994) or to the other keys used to develop this area specific taxonomic key.

  3. Twelve previously unknown phage genera are ubiquitous in global oceans.

    Science.gov (United States)

    Holmfeldt, Karin; Solonenko, Natalie; Shah, Manesh; Corrier, Kristen; Riemann, Lasse; Verberkmoes, Nathan C; Sullivan, Matthew B

    2013-07-30

    Viruses are fundamental to ecosystems ranging from oceans to humans, yet our ability to study them is bottlenecked by the lack of ecologically relevant isolates, resulting in "unknowns" dominating culture-independent surveys. Here we present genomes from 31 phages infecting multiple strains of the aquatic bacterium Cellulophaga baltica (Bacteroidetes) to provide data for an underrepresented and environmentally abundant bacterial lineage. Comparative genomics delineated 12 phage groups that (i) each represent a new genus, and (ii) represent one novel and four well-known viral families. This diversity contrasts the few well-studied marine phage systems, but parallels the diversity of phages infecting human-associated bacteria. Although all 12 Cellulophaga phages represent new genera, the podoviruses and icosahedral, nontailed ssDNA phages were exceptional, with genomes up to twice as large as those previously observed for each phage type. Structural novelty was also substantial, requiring experimental phage proteomics to identify 83% of the structural proteins. The presence of uncommon nucleotide metabolism genes in four genera likely underscores the importance of scavenging nutrient-rich molecules as previously seen for phages in marine environments. Metagenomic recruitment analyses suggest that these particular Cellulophaga phages are rare and may represent a first glimpse into the phage side of the rare biosphere. However, these analyses also revealed that these phage genera are widespread, occurring in 94% of 137 investigated metagenomes. Together, this diverse and novel collection of phages identifies a small but ubiquitous fraction of unknown marine viral diversity and provides numerous environmentally relevant phage-host systems for experimental hypothesis testing.

  4. Elliptic Genera of Symmetric Products and Second Quantized Strings

    CERN Document Server

    Dijkgraaf, R; Verlinde, Erik; Verlinde, Herman L

    1997-01-01

    In this note we prove an identity that equates the elliptic genus partition function of a supersymmetric sigma model on the $N$-fold symmetric product $M^N/S_N$ of a manifold $M$ to the partition function of a second quantized string theory on the space $M \\times S^1$. The generating function of these elliptic genera is shown to be (almost) an automorphic form for $O(3,2,\\Z)$. In the context of D-brane dynamics, this result gives a precise computation of the free energy of a gas of D-strings inside a higher-dimensional brane.

  5. A checklist and adult key to the Chinese stonefly (Plecoptera) genera.

    Science.gov (United States)

    Chen, Zhi-Teng; Du, Yu-Zhou

    2018-01-23

    The first checklist of the known stonefly genera of China is presented. Using relevant literature and available specimens, a diagnostic key to the ten families representing 65 genera is provided. In addition, illustrations for the key characters are provided.

  6. Massive production of butanediol during plant infection by phytopathogenic bacteria of the genera Dickeya and Pectobacterium.

    Science.gov (United States)

    Effantin, Géraldine; Rivasseau, Corinne; Gromova, Marina; Bligny, Richard; Hugouvieux-Cotte-Pattat, Nicole

    2011-11-01

    Plant pathogenic bacteria of the genera Dickeya and Pectobacterium are broad-host-range necrotrophs which cause soft-rot diseases in important crops. A metabolomic analysis, based on (13)C-NMR spectroscopy, was used to characterize the plant-bacteria interaction. Metabolic profiles revealed a decline in plant sugars and amino acids during infection and the concomitant appearance of a compound identified as 2,3-butanediol. Butanediol is the major metabolite found in macerated tissues of various host plants. It is accumulated during the symptomatic phase of the disease. Different species of Dickeya or Pectobacterium secrete high levels of butanediol during plant infection. Butanediol has been described as a signalling molecule involved in plant/bacterium interactions and, notably, able to induce plant systemic resistance. The bud genes, involved in butanediol production, are conserved in the phytopathogenic enterobacteria of the genera Dickeya, Pectobacterium, Erwinia, Pantoea and Brenneria. Inactivation of the bud genes of Dickeya dadantii revealed that the virulence of budA, budB and budR mutants was clearly reduced. The genes budA, budB and budC are highly expressed during plant infection. These data highlight the importance of butanediol metabolism in limiting acidification of the plant tissue during the development of the soft-rot disease caused by pectinolytic enterobacteria. © 2011 Blackwell Publishing Ltd.

  7. Human exposure to airborne fungi from genera used as biocontrol agents in plant production.

    Science.gov (United States)

    Madsen, Anne Mette; Hansen, Vinni Mona; Meyling, Nicolai Vitt; Eilenberg, Jørgen

    2007-01-01

    The fungi Trichoderma harzianum, T. polysporum, T. viride, Paeciliomyces fumosoroseus, P. lilacinus, Verticillium/lecanicillium lecanii, Ulocladium oudemansii, U. atrum and Beauveria bassiana are used or considered to be used for biocontrol of pests and plant diseases. Human exposure to these fungi in environments where they may naturally occur or are used as biocontrol agents has not been directly investigated to date. This review aims to provide an overview of the current knowledge of human exposure to fungi from the relevant genera. The subject of fungal taxonomy due to the rapid development of this issue is also discussed. B. bassiana, V. lecanii, T. harzianum, T. polysporum, P. lilacinus and U. oudemansii were infrequently present in the air and thus people in general seem to be seldom exposed to these fungi. However, when V. lecanii was present, high concentrations were measured. Fungi from the genera Trichoderma, Paecilomyces and Ulocladium were rarely identified to the species level and sometimes high concentrations were reported. T. viride and U. atrum were detected frequently in different environments and sometimes with a high frequency of presence in samples. Thus, people seem to be frequently exposed to these fungi. Sequence data have led to recent revisions of fungal taxonomy, and in future studies it is important to specify the taxonomy used for identification, thus making comparisons possible.

  8. Patterns of diversification in islands: A comparative study across three gecko genera in the Socotra Archipelago.

    Science.gov (United States)

    Garcia-Porta, Joan; Morales, Hernán E; Gómez-Díaz, Elena; Sindaco, Roberto; Carranza, Salvador

    2016-05-01

    In this study we used the complete fauna of geckos of the Socotra Archipelago to test whether the three gecko genera co-occurring in the islands (Pristurus, Hemidactylus and Haemodracon) produced similar outcomes of morphological and climatic diversification. To test this, we produced a time-calibrated tree of 346 geckos including all 16 endemic species of the archipelago and 26 potential close-relatives in the continent. Our dating estimates revealed that most of the diversity of geckos in the archipelago was the consequence of in situ diversification. However not all genera shared similar patterns of diversification. While in Hemidactylus and Haemodracon this involved great differences in body size and low levels of climatic diversification (mostly involving sympatric distributions), an opposite pattern appeared in Pristurus in which most of the diversification involved shifts in climatic envelopes (mostly involving allopatric and parapatric distributions) but almost no size differentiation. Consistently with this, Pristurus was the only genus in which rates of size diversification in islands were substantially lower than in the continent. This illustrates how different groups can greatly differ in their patterns of intra-island diversification and highlights the importance of taxon-dependent factors at determining different patterns of diversification in the same insular context. Copyright © 2016 Elsevier Inc. All rights reserved.

  9. Chromosome numbers and karyotype evolution in holoparasitic Orobanche (Orobanchaceae) and related genera

    Science.gov (United States)

    Schneeweiss, G.M.; Palomeque, T.; Colwell, A.E.; Weiss-Schneeweiss, H.

    2004-01-01

    Chromosome numbers and karyotypes of species of Orobanche, Cistanche, and Diphelypaea (Orobanchaceae) were investigated, and 108 chromosome counts of 53 taxa, 19 counted for the first time, are presented with a thorough compilation of previously published data. Additionally, karyotypes of representatives of these genera, including Orobanche sects. Orobanche and Trionychon, are reported. Cistanche (x = 20) has large meta- to submetacentric chromosomes, while those of Diphelypaea (x = 19) are medium-sized submeta-to acrocentrics. Within three analyzed sections of Orobanche, sects. Myzorrhiza (x = 24) and Trionychon (x = 12) possess medium-sized submeta- to acrocentrics, while sect. Orobanche (x = 19) has small, mostly meta- to submetacentric, chromosomes. Polyploidy is unevenly distributed in Orobanche and restricted to a few lineages, e.g., O. sect. Myzorrhiza or Orobanche gracilis and its relatives (sect. Orobanche). The distribution of basic chromosome numbers supports the groups found by molecular phylogenetic analyses: Cistanche has x = 20, the Orobanche-group (Orobanche sect. Orobanche, Diphelypaea) has x = 19, and the Phelipanche-group (Orobanche sects. Gymnocaulis, Myzorrhiza, Trionychon) has x = 12, 24. A model of chromosome number evolution in Orobanche and related genera is presented: from two ancestral base numbers, xh = 5 and xh = 6, independent polyploidizations led to x = 20 (Cistanche) and (after dysploidization) x = 19 (Orobanche-group) and to x = 12 and x = 24 (Phelipanche-group), respectively.

  10. Deep Multi-Task Learning for Tree Genera Classification

    Science.gov (United States)

    Ko, C.; Kang, J.; Sohn, G.

    2018-05-01

    The goal for our paper is to classify tree genera using airborne Light Detection and Ranging (LiDAR) data with Convolution Neural Network (CNN) - Multi-task Network (MTN) implementation. Unlike Single-task Network (STN) where only one task is assigned to the learning outcome, MTN is a deep learning architect for learning a main task (classification of tree genera) with other tasks (in our study, classification of coniferous and deciduous) simultaneously, with shared classification features. The main contribution of this paper is to improve classification accuracy from CNN-STN to CNN-MTN. This is achieved by introducing a concurrence loss (Lcd) to the designed MTN. This term regulates the overall network performance by minimizing the inconsistencies between the two tasks. Results show that we can increase the classification accuracy from 88.7 % to 91.0 % (from STN to MTN). The second goal of this paper is to solve the problem of small training sample size by multiple-view data generation. The motivation of this goal is to address one of the most common problems in implementing deep learning architecture, the insufficient number of training data. We address this problem by simulating training dataset with multiple-view approach. The promising results from this paper are providing a basis for classifying a larger number of dataset and number of classes in the future.

  11. Genetic diversity and host specificity varies across three genera of blood parasites in ducks of the Pacific Americas Flyway

    Science.gov (United States)

    Reeves, Andrew B.; Smith, Matthew M.; Meixell, Brandt W.; Fleskes, Joseph P.; Ramey, Andrew M.

    2015-01-01

    Birds of the order Anseriformes, commonly referred to as waterfowl, are frequently infected by Haemosporidia of the genera Haemoproteus, Plasmodium, and Leucocytozoon via dipteran vectors. We analyzed nucleotide sequences of the Cytochrome b (Cytb) gene from parasites of these genera detected in six species of ducks from Alaska and California, USA to characterize the genetic diversity of Haemosporidia infecting waterfowl at two ends of the Pacific Americas Flyway. In addition, parasite Cytb sequences were compared to those available on a public database to investigate specificity of genetic lineages to hosts of the order Anseriformes. Haplotype and nucleotide diversity of Haemoproteus Cytb sequences was lower than was detected for Plasmodium and Leucocytozoon parasites. Although waterfowl are presumed to be infected by only a single species of Leucocytozoon, L. simondi, diversity indices were highest for haplotypes from this genus and sequences formed five distinct clades separated by genetic distances of 4.9%–7.6%, suggesting potential cryptic speciation. All Haemoproteus andLeucocytozoon haplotypes derived from waterfowl samples formed monophyletic clades in phylogenetic analyses and were unique to the order Anseriformes with few exceptions. In contrast, waterfowl-origin Plasmodium haplotypes were identical or closely related to lineages found in other avian orders. Our results suggest a more generalist strategy for Plasmodiumparasites infecting North American waterfowl as compared to those of the generaHaemoproteus and Leucocytozoon.

  12. Genomic organization and dynamics of repetitive DNA sequences in representatives of three Fagaceae genera.

    Science.gov (United States)

    Alves, Sofia; Ribeiro, Teresa; Inácio, Vera; Rocheta, Margarida; Morais-Cecílio, Leonor

    2012-05-01

    Oaks, chestnuts, and beeches are economically important species of the Fagaceae. To understand the relationship between these members of this family, a deep knowledge of their genome composition and organization is needed. In this work, we have isolated and characterized several AFLP fragments obtained from Quercus rotundifolia Lam. through homology searches in available databases. Genomic polymorphisms involving some of these sequences were evaluated in two species of Quercus, one of Castanea, and one of Fagus with specific primers. Comparative FISH analysis with generated sequences was performed in interphase nuclei of the four species, and the co-immunolocalization of 5-methylcytosine was also studied. Some of the sequences isolated proved to be genus-specific, while others were present in all the genera. Retroelements, either gypsy-like of the Tat/Athila clade or copia-like, are well represented, and most are dispersed in euchromatic regions of these species with no DNA methylation associated, pointing to an interspersed arrangement of these retroelements with potential gene-rich regions. A particular gypsy-sequence is dispersed in oaks and chestnut nuclei, but its confinement to chromocenters in beech evidences genome restructuring events during evolution of Fagaceae. Several sequences generated in this study proved to be good tools to comparatively study Fagaceae genome organization.

  13. Review: hepatoprotective and microbiological studies of three genera: Equisetum, Lycopodium, and Gentiana

    Directory of Open Access Journals (Sweden)

    Maria SUCIU

    2012-11-01

    Full Text Available Liver injury treatments are among the most important of today’s research domains, because with every passing year there is a more acute need for liver transplants. Many of the everyday drugs that people use, and all the toxic influences and unhealthy food lead to some form of liver disorder. That is why today’s attention is drawn to the potentials of a few miracle plants that have the ability to reduce or cure liver damage. Equisetum, Lycopodium and Gentiana genera species are well known homeopathic plants in the Northern Hemisphere. Their properties are used in many disorders, and in the recent studies they are tested for their microbiological and hepatic curative actions.

  14. Revision of the Madagascan genera Oncodopus Brongniart and Colossopus Saussure (Orthoptera: Tettigoniidae: Conocephalinae; Euconchophorini), with description of Malagasopus gen. nov.

    Science.gov (United States)

    Ünal, Mustafa; Beccaloni, George W

    2017-10-31

    The endemic Madagascan genera Oncodopus Brongniart and Colossopus Saussure are revised using museum specimens, including the types, and recently collected material. A new genus, Malagasopus gen. nov., and seven new species, Malagasopus desutterae sp. nov., Malagasopus meridianus sp. nov., Oncodopus janetae sp. nov., Oncodopus brongniarti sp. nov., Oncodopus saussurei sp. nov., Oncodopus soalalaensis sp. nov. and Colossopus parvicavus sp. nov. are described. Lectotypes are designated for Oncodopus zonatus Brongniart, 1897 and Colossopus redtenbacheri (Brongniart, 1897). A new term, mesothoracic auricle, is proposed for a structure on the episternum of the mesothorax. A tabulated key to the genera and keys to the species are presented. All species are described and diagnosed, and their phylogenetic relationships, geographical distributions, habitat preferences and phenologies are documented. The life history of Colossopus grandidieri is described, and the unusual possible mate-guarding behaviour of several species is discussed. Maps showing the distribution of the species are presented, as too are 57 photographs of museum specimens, 51 drawings of morphological characters, 17 photographs of living specimens and one habitat photograph.

  15. Phytogeographical analysis of seed plant genera in China.

    Science.gov (United States)

    Qian, Hong; Wang, Silong; He, Jin-Sheng; Zhang, Junli; Wang, Lisong; Wang, Xianli; Guo, Ke

    2006-11-01

    A central goal of biogeography and ecology is to uncover and understand distributional patterns of organisms. China has long been a focus of attention because of its rich biota, especially with respect to plants. Using 290 floras from across China, this paper quantitatively characterizes the composition of floristic elements at multiple scales (i.e. national, provincial and local), and explores the extent to which climatic and geographical factors associated with each flora can jointly and independently explain the variation in floristic elements in local floras. A study was made of 261 local floras, 28 province-level floras and one national-level flora across China. Genera of seed plants in each flora were assigned to 14 floristic elements according to their worldwide geographical distributions. The composition of floristic elements was related to climatic and geographical factors. Variations in percentages of cosmopolitan, tropical and temperate genera among local floras tend to be greater at higher latitudes than at lower latitudes. Latitude is strongly correlated with the proportions of 13 of the 14 floristic elements. Correlations of the proportions of floristic elements with longitude are much weaker than those with latitude. Climate represented by the first principal component of a principal component analysis was strongly correlated with the proportions of floristic elements in local floras (|r| = 0.75 +/- 0.18). Geographical coordinates independently explained about four times as much variation in floristic elements as did climate. Further research is necessary to examine the roles of water-energy dynamics, geology, soils, biotic interactions, and historical factors such as land connections between continents in the past and at present in creating observed floristic patterns.

  16. Phylogeny of the industrial relevant, thermophilic genera Myceliophthora and Corynascus

    NARCIS (Netherlands)

    van den Brink, J.; Samson, R.A.; Hagen, F.; Boekhout, T.; de Vries, R.P.

    2012-01-01

    Species of the genus Myceliophthora and its teleomorph Corynascus have attracted increasing interest due to their potential to produce thermostable enzymes. This study re-assessed the phylogenetic relationship of 49 isolates of nine species belonging to Myceliophthora and Corynascus. One species, M.

  17. Development of a multiplex PCR assay for rapid and simultaneous detection of four genera of fish pathogenic bacteria.

    Science.gov (United States)

    Zhang, D F; Zhang, Q Q; Li, A H

    2014-11-01

    Species of genus Aeromonas, Vibrio, Edwardsiella and Streptococcus are the most common fish pathogenic bacteria that cause economically devastating losses in aquaculture. A multiplex polymerase chain reaction (mPCR) was developed for the simultaneous detection and differentiation of the four genera of fish pathogenic bacteria. Through the use of genus-specific primers instead of species-specific ones, the current mPCR covered much more target bacterial species compared with previously reported species-specific mPCR methods. The specificity of the four putative genus-specific primers was validated experimentally while used exclusively (uniplex PCR) or combined (mPCR) against bacterial genomic DNA templates of the target bacteria and nontarget bacteria. The PCR amplicons for the following genera were obtained as expected: Aeromonas (875 bp), Vibrio (524 bp), Edwardsiella (302 bp) and Streptococcus (197 bp), and the fragments could be separated clearly on the agarose gel electrophoresis. The mPCR did not produce nonspecific amplification products when used to amplify 21 nontarget species of bacteria. The mPCR detection limits for each target bacterial genera were 50 colony-forming units (CFU) in pure culture and 100 CFU in fish tissue samples. In conclusion, the mPCR assay was proven to be a powerful alternative to the conventional culture-based method, given its rapid, specific, sensitive and reliable detection of target pathogens. The fish pathogenic bacteria of genus Aeromonas, Vibrio, Edwardsiella and Streptococcus frequently cause severe outbreaks of diseases in cultured fish, and the genus-specific multiplex PCR assay developed in this study can detect the bacteria of the four genera when present in the samples either alone or mixed. The mPCR assay is expected to identify the causative agents more efficiently than uniplex PCR or species-specific multiplex PCR for clinical diagnosis, resulting in the earlier implementation of control measures. This m

  18. Seasonal water stress tolerance and habitat associations within four neotropical tree genera.

    Science.gov (United States)

    Baraloto, Christopher; Morneau, François; Bonal, Damien; Blanc, Lilian; Ferry, Bruno

    2007-02-01

    provides an explanation for the regional coexistence of these species pairs. We suggest that specialization to seasonally flooded habitats may explain patterns of adaptive radiation in many tropical tree genera and thereby provide a substantial contribution to regional tree diversity.

  19. Iranotrichia gen. n., a new genus of Scenopinidae (Diptera from Iran, with a key to window fly genera of the world

    Directory of Open Access Journals (Sweden)

    Shaun Winterton

    2011-10-01

    Full Text Available An unusual new genus of Scenopinidae, Iranotrichia gen. n., comprising two newly discovered species (I. insolita sp. n. and I. nigra sp. n., is described from Iran. Iranotrichia gen. n. are scenopinine window flies with a habitus reminiscent of certain bee fly genera (Bombyliidae, based on colouration and elongate mouthparts and antennae. The phylogenetic placement of this distinctive new genus is discussed and a dichotomous key to world genera is presented. The genus name Kelseyana nom. n. is proposed to replace Caenoneura Kröber, 1924, which was found to be preoccupied by Thomson (1870: 270 (Hymenoptera and Kirby (1890: 136 (Odonata.

  20. The cranial osteology and feeding ecology of the metriorhynchid crocodylomorph genera Dakosaurus and Plesiosuchus from the late Jurassic of Europe.

    Directory of Open Access Journals (Sweden)

    Mark T Young

    Full Text Available Dakosaurus and Plesiosuchus are characteristic genera of aquatic, large-bodied, macrophagous metriorhynchid crocodylomorphs. Recent studies show that these genera were apex predators in marine ecosystems during the latter part of the Late Jurassic, with robust skulls and strong bite forces optimized for feeding on large prey.Here we present comprehensive osteological descriptions and systematic revisions of the type species of both genera, and in doing so we resurrect the genus Plesiosuchus for the species Dakosaurus manselii. Both species are diagnosed with numerous autapomorphies. Dakosaurus maximus has premaxillary 'lateral plates'; strongly ornamented maxillae; macroziphodont dentition; tightly fitting tooth-to-tooth occlusion; and extensive macrowear on the mesial and distal margins. Plesiosuchus manselii is distinct in having: non-amblygnathous rostrum; long mandibular symphysis; microziphodont teeth; tooth-crown apices that lack spalled surfaces or breaks; and no evidence for occlusal wear facets. Our phylogenetic analysis finds Dakosaurus maximus to be the sister taxon of the South American Dakosaurus andiniensis, and Plesiosuchus manselii in a polytomy at the base of Geosaurini (the subclade of macrophagous metriorhynchids that includes Dakosaurus, Geosaurus and Torvoneustes.The sympatry of Dakosaurus and Plesiosuchus is curiously similar to North Atlantic killer whales, which have one larger 'type' that lacks tooth-crown breakage being sympatric with a smaller 'type' that has extensive crown breakage. Assuming this morphofunctional complex is indicative of diet, then Plesiosuchus would be a specialist feeding on other marine reptiles while Dakosaurus would be a generalist and possible suction-feeder. This hypothesis is supported by Plesiosuchus manselii having a very large optimum gape (gape at which multiple teeth come into contact with a prey-item, while Dakosaurus maximus possesses craniomandibular characteristics observed in extant

  1. Contribution to the study of fungi in the genera Sparassis Fr. and Hericium Pers. in our forests

    Directory of Open Access Journals (Sweden)

    Karadžić Dragan

    2006-01-01

    Full Text Available Fungi in the genera Sparassis and Hericium cause wood decay. In the forests of Serbia and Montenegro 4 species are identified in the genus Sparassis, and 3 species in the genus Hericium. These fungi develop on physiologically weakened trees, recently killed trees and branch litter (windthrows, broken trees, logs, thick branches. Especially great damage in the stands of Pinus species can be caused by the fungus Sparassis crispa. This fungus colonizes the living trees through the root and causes the brown cubical rot of wood. The rot then spreads from the root to the heartwood and gradually occupies the lower, economically the most valuable part of the tree. In the young phase, the fruiting bodies of all the identified species are edible. Sparassis crispa and Hericium erinaceus excel by their nutritive value and today (in some countries they are even artificially cultivated.

  2. Phylogenomics and Divergence Dating of Fungus-Farming Ants (Hymenoptera: Formicidae of the Genera Sericomyrmex and Apterostigma.

    Directory of Open Access Journals (Sweden)

    Ana Ješovnik

    Full Text Available Fungus-farming ("attine" ants are model systems for studies of symbiosis, coevolution, and advanced eusociality. A New World clade of nearly 300 species in 15 genera, all attine ants cultivate fungal symbionts for food. In order to better understand the evolution of ant agriculture, we sequenced, assembled, and analyzed transcriptomes of four different attine ant species in two genera: three species in the higher-attine genus Sericomyrmex and a single lower-attine ant species, Apterostigma megacephala, representing the first genomic data for either genus. These data were combined with published genomes of nine other ant species and the honey bee Apis mellifera for phylogenomic and divergence-dating analyses. The resulting phylogeny confirms relationships inferred in previous studies of fungus-farming ants. Divergence-dating analyses recovered slightly older dates than most prior analyses, estimating that attine ants originated 53.6-66.7 million of years ago, and recovered a very long branch subtending a very recent, rapid radiation of the genus Sericomyrmex. This result is further confirmed by a separate analysis of the three Sericomyrmex species, which reveals that 92.71% of orthologs have 99% - 100% pairwise-identical nucleotide sequences. We searched the transcriptomes for genes of interest, most importantly argininosuccinate synthase and argininosuccinate lyase, which are functional in other ants but which are known to have been lost in seven previously studied attine ant species. Loss of the ability to produce the amino acid arginine has been hypothesized to contribute to the obligate dependence of attine ants upon their cultivated fungi, but the point in fungus-farming ant evolution at which these losses occurred has remained unknown. We did not find these genes in any of the sequenced transcriptomes. Although expected for Sericomyrmex species, the absence of arginine anabolic genes in the lower-attine ant Apterostigma megacephala strongly

  3. A revision of male ants of the Malagasy Amblyoponinae (Hymenoptera: Formicidae with resurrections of the genera Stigmatomma and Xymmer.

    Directory of Open Access Journals (Sweden)

    Masashi Yoshimura

    Full Text Available In a male-based revision of ants of the subfamily Amblyoponinae from the Southwest Indian Ocean islands (SWIO: Comoros, Madagascar, Mauritius, Mayotte, Reunion, and Seychelles, we explore and reconsider male morphological characters that distinguish genera within the group. Our investigation redefines Amblyopone Erichson sensu Brown (1960, here referred to as Amblyopone sensu lato, into three genera: Xymmer Santschi stat. rev.,Amblyopone sensu stricto, Stigmatomma Roger stat. rev. All species names under Amblyopone s. l. reassign into Xymmer and Amblyopone s. s., which are small, well-defined genera, and Stigmatomma, a large group with a generic delimitation that still needs further refinement. Based on a study of male mandible characters and our scenario for mandibular evolution of the worker caste within Amblyopone s. l, we conclude that Amblyopone s. s. nests outside of XMAS (Xymmer+Mystrium+Adetomyrma+Stigmatomma clade. The following names are transferred from Amblyopone s. l. to Xymmer as comb. rev.: muticus. The following names are transferred from Amblyopone s. l. to Stigmatomma as comb. rev.: amblyops, armigerum, bellii, bierigi, bruni, celata, chilense, denticulatum, elongatum, emeryi, feae, impressifrons, luzonicum, minuta, normandi, oregonense, pallipes, quadratum, reclinatum, rothneyi, santschii, saundersi, silvestrii, zwaluwenburgi; as comb. nov.: agostii, annae, besucheti, boltoni, caliginosum, cleae, crenatum, degeneratum, egregium, electrinum, eminia, exiguum, falcatum, ferrugineum, fulvidum, gaetulicum, gingivalis, glauerti, gnoma, gracile, groehni, heraldoi, lucidum, lurilabes, monrosi, mystriops, noonadan, octodentatum, ophthalmicum, orizabanum, papuanum, pertinax, pluto, punctulatum, rubiginoum, sakaii, smithi, trigonignathum, trilobum, wilsoni, zaojun, and testaceum. A male-based key to the genera of Malagasy amblyoponine ants, their diagnoses, and a discussion of the evolution of the morphological character of males in the

  4. Habitat preference of Zoantharia genera depends on host sponge morphology

    Directory of Open Access Journals (Sweden)

    Alberto Acosta

    2010-08-01

    Full Text Available Studies about sponge-zoanthid symbioses have been focused on understanding the specificity of the association, rather thantesting what are the characteristics that make the host suitable to be colonized. For the first time it is investigated whether the ZoanthariaParazoanthus and Epizoanthus preference is related to the host sponge morphology (shape and mechanical resistance. Materials andmethods. Sponges were categorized according to their shape and mechanical resistance. The presence/absence of zoanthids was recordedin 1,068 sponges at San Andres Island, and their habitat preference was evaluated using indices and confidence intervals. Results. 85Parazoanthus colonies (78% of the total associations and 24 Epizoanthus colonies (22% were associated to sponges (10.2% in total.Parazoanthus uses branched and compressible sponges although prefers encrusting and fragile sponges, while Epizoanthus showes theopposite pattern, it can inhabit encrusting and fragile sponges but prefers branched and compressible sponges. Conclusion. These resultsindicated that sponge morphology is an important trait in zoanthid habitat selection. On the other hand, the similarity in the habitat used byzoanthids suggests the possibility of inter-generic competition if common resources are limited in time and space, while the differentialhabitat preference allows the competitive coexistence of both genera.

  5. Species of Ganoderma and related genera mainly of the Bogor and Leiden Herbaria

    NARCIS (Netherlands)

    Steyaert, R.L.

    1972-01-01

    This contribution to the knowledge of the Aphyllophorales is dedicated to Dr. M. A. Donk as a tribute to his life-long endeavour to put the systematics and the taxonomy of this challenging order on a sound basis. A collection of South Asian specimens of Ganoderma and various other collections have

  6. Revision of the Lauraceae V. A monograph of the genera: Anaueria, Beilschmiedia (American species) and Aniba

    NARCIS (Netherlands)

    Kostermans, A.J.G.H.

    1938-01-01

    Anaueria Kosterm. in Chronica Botanica IV, 1 (1938), p. 14. Arbores brasilienses foliis sub-oppositis. Flores hermaphroditi ex-involucrati paniculati; tepalis sex tribus exterioribus minoribus. Stamina novem quorum sex exteriora fertilia filamentis in annulum ovarium cingentem connatis antheris

  7. Descriptions of new Genera and species of the so-called Glyphipterygidae Sensu Meyrick, 1913 (Lepidoptera)

    NARCIS (Netherlands)

    Diakonoff, A.

    1978-01-01

    In the course of a revision of the so-called family Glyphipterygidae sensu Meyrick, 1913, for the series "Microlepidoptera Palaearctica", several new taxa came to light. In order to facilitate the edition of the revision and to publish these new taxa without further delay, they are being described

  8. The genera of Fungi: fixing the application of type species of generic names

    NARCIS (Netherlands)

    Crous, P.W.; Giraldo, A.; Hawksworth, D.L.; Robert, V.; Kirk, P.M.; Guarro, J.; Robbertse, B.; Schoch, C.L.; Damm, U.; Trakunyingcharoen, T.; Groenewald, J.Z.

    2014-01-01

    To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org

  9. The Genera of Fungi : fixing the application of type species of generic names

    NARCIS (Netherlands)

    Crous, Pedro W; Giraldo Lopez, Dixie Alejandra; Hawksworth, David L; Robert, Vincent; Kirk, Paul M; Guarro, Josep; Robbertse, Barbara; Schoch, Conrad L; Damm, Ulrike; Trakunyingcharoen, Thippawan; Groenewald, Johannes Z

    To ensure a stable platform for fungal taxonomy, it is of paramount importance that the genetic application of generic names be based on their DNA sequence data, and wherever possible, not morphology or ecology alone. To facilitate this process, a new database, accessible at www.GeneraofFungi.org

  10. Karyotypes of three gerbil species of the genera Tatera and Gerbilliscus from Turkey and Senegal

    Czech Academy of Sciences Publication Activity Database

    Arslan, A.; Zima, Jan; Koubínová, D.; Yorulmaz, T.; Toyran, K.; Gözütok, S.

    2013-01-01

    Roč. 9, č. 1 (2013), s. 57-62 ISSN 1584-9074 R&D Projects: GA AV ČR IAA6093404; GA MŠk LC06073 Institutional support: RVO:68081766 Keywords : cytogenetics * taxonomy * Gerbillinae * Asia Minor * western Africa Subject RIV: EG - Zoology Impact factor: 0.700, year: 2013 http://www.fileden.com/files/2008/1/6/1683128/Nwjz/vol9/nwjz.131701.Arslan.pdf

  11. Phyllotactic spectra in cacti: Mammilaria species and some genera from Rebutia group

    Directory of Open Access Journals (Sweden)

    Edyta Gola

    2014-01-01

    Full Text Available Phyllotaxis of globular or hemispheric cacti from Mammillaria genus and from Rebutia group shows the significant differences between the two groups. An extremely wide spectrum of phyllotaxis with many infrequent patterns has been found in Rebutia group while in Mammilluria genus it appears to be quite narrow with the main Fibonacci pattern dominant. Therefore one of possible factors responsible for these differences might be a genetic one. Ontogenetic transformations of phyllotaxis both continuous (quantitative and discontinuous (qualitative have been found in studied cacti. These developmental events together with dichotomy frequently occurring in some taxa increase the level of phyllotaxis diversity. As more than one expression of the pattern occurred due to continuous transformations in many studied cacti - the numbers of opposite spirals can no longer be treated as a feature of the diagnostic value in cactus taxonomy. Because of intense developmental changes significant is rather a range of phyllotaxis diversity (phyllotactic spectrum than a single pattern or its expression in a given taxon.

  12. The eastern Asian and eastern and western North American floristic disjunction: congruent phylogenetic patterns in seven diverse genera.

    Science.gov (United States)

    Xiang, Q Y; Soltis, D E; Soltis, P S

    1998-10-01

    One of the most remarkable examples of intercontinental disjunction of the North Temperate Flora involves eastern Asia and eastern and western North America. Although there has been considerable interest in this phytogeographic pattern for over 150 years (e.g., Gray, 1859; Li, 1952; Graham, 1972; Boufford and Spongberg, 1983; Wu, 1983; Tiffney, 1985a, 1985b), relationships among taxa displaying the disjunction remain obscure. Understanding phylogenetic relationships is, however, a prerequisite for historical biogeographic analyses of this distributional pattern. To understand better the relationships of taxa displaying this intercontinental disjunction, phylogenetic analyses were conducted using a variety of DNA data sets for species of four genera (Cornus, Boykinia, Tiarella, and Trautvetteria) that occur in eastern Asia, eastern North America, and western North America. An area cladogram was constructed for each of the four genera, all of which show a similar pattern of relationship: the eastern Asian species are sister to all North American species. An identical phylogenetic pattern is also found in three other taxa exhibiting this disjunction (Aralia sect. Aralia, Calycanthus, and Adiantum pedatum). The congruent phylogenetic pattern found in these seven diverse genera raises the possibility of a common origin of the eastern Asia, eastern and western North America disjunction. The data are in agreement with the long-standing hypothesis that this well-known floristic disjunction represents the fragmentation of a once continuous Mixed Mesophytic forest community and suggest that the disjunction may have involved only two major vicariance events: an initial split between Eurasia and North America, followed by the isolation of floras between eastern and western North America. However, congruence between phylogenies and geographic distributions does not necessarily indicate an identical phytogeographic history. Taxa exhibiting the same phylogenetic pattern may have

  13. Tree structural and species diversities in Okwangwo Forest, Cross ...

    African Journals Online (AJOL)

    Tree species were grouped into abundance classes. A total of 125 tree species belonging to 36 families and 96 genera were recorded in the area with Margaleffs index of species richness of 2.2754. Most (99) of the tree species encountered were threatened/endangered, 23 species were rare with only 3 tree species ...

  14. PRELIMINARY REVISIONS OF SOME GENERA OF MALAYSIAN PAPILIONACEAE II

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    MS van Meeuwen

    2014-01-01

    Full Text Available The revisions or notes have been prepared by Miss M. S. van Meeuwen, except for those of Pseudarthria and Sophora by C. G. G. J. van Steenis, and Tephrosia by J. Stemmerik. In Alysicarpus 4 species are distinguished in Malaysia; a key, synonymy, and discussion are given.Lourea Desv., being a homonym, has, according to Dr. Bakhuizen van den Brink, to be replaced by Christia; a key and discussion is given of 4 Malaysian species; 5 new combinations are proposed. Under Desmodium the variability of D. heterocarpon (L. DC. and its full synonymy are discussed; one new variety is proposed; an enumeration of specimens of both varieties is given. D. ormooarpoides DC. and D. zonatum Miq. are two sharply distinct species which have been confused in the past; a key, synonyms, discussion, and enumeration of specimens ;; j are provided. The discrimination of D. sequax Wall, and D. viegaphyllum Zoll. is discussed and their synonymy given; specimens have been enumerated. Distribution is given of D. scorpiurus (Sw. Desv. and D. tor-tuosum (Sw.   DC. Psoraleai is revised for Malaysia where 4 species are recorded and keyed out; a fifth species must remain dubious, as the type could not be traced in the Paris Herbarium. Of Pseudarthria only one species occurs in Malaysia; its synonymy and distribution is given.Sophora longipes Merr.; an endemic species from the Philippines, is recorded for Timor. Of Tephro&ia maculata M. & P., from Papua, the synonymy is given and specimens enumerated; T. brachystachys Laut. & K. Seh. is reduced. Notes and distribution are given of T. zollingeri Backer. For T. mollie . Val., a later homonym, the new name T. papuana is proposed.

  15. Wood Anatomy in Several Genera of Nigerian Annonaceae

    Directory of Open Access Journals (Sweden)

    Olatunji Olusanya OLATUNJI

    2014-03-01

    Full Text Available The anatomical characteristic of the wood of Annona muricata, A. senegalensis, Xylopia aethiopica, A. glauca, A. squamosa, Cleistopholis patens, Monodora tenuifolia and Greenwayodendron suaviolis were investigated in search of their stable taxonomic attribute. Thirty-two wood samples were collected from eight species of Annonnaceae (four specimens each. Fixation of the most healthy and fresh wood of each species was done using 500 ml of FAA (Formalin Acetic Acid and dehydrated in a series of ethanol while infiltration was done using tertiary-butyl-alcohol prepared in accordance with Johansen’s method. The sectioning was carried out with a rotary microtome and the slide containing the wood samples were examined using power shots s70 camera attached to computer. The results revealed several interesting wood anatomical features such as the presence of numerous fibre, ray cells, vessels, absence of axial parenchyma in some species, growth ring ranges from distinct to indistinct. Rays are composed of upright cells in A. muricata, fibre tracheid are also uncommon in A. muricata but common in G. suaviolis. Axial parenchyma are common in A. glauca and A. squamosa but absent in other species. The wood structure of A. glauca and A. squamosa are similar to that of C. patens, but the absence of axial parenchyma distinguished it from them. The results are important in understanding the relationships between and within the species.

  16. Privisional key to the genera of Loranthaceae and Viscaceae of the Flora Malesiana region

    NARCIS (Netherlands)

    Barlow, B.A.

    1991-01-01

    Precursor publications by the author are in press or in preparation prior to a treatment of the mistletoe families Loranthaceae and Viscaceae for the Flora Malesiana. The provisional keys to genera set out below is offered as an indication of the genera which are accepted for the region. Comments on

  17. Pollen morphology within the Monodora clade, a diverse group of five African Annonaceae genera

    NARCIS (Netherlands)

    Couvreur, T.L.P.; Botermans, M.; Heuven, Van B.J.; Ham, van der R.W.J.M.

    2008-01-01

    Pollen morphology has played a major role in elucidating infrafamiliar-level systematics and evolution within Annonaceae, especially within the African genera. The Monodora clade is composed of five genera, Asteranthe, Hexalobus, Isolona, Monodora and Uvariastrum, which are restricted to Africa and

  18. Plectranthus (Labiatae and allied genera in Southern Africa

    Directory of Open Access Journals (Sweden)

    L. E. Codd

    1975-11-01

    Full Text Available A revision is presented of the 40 species of Plectranthus, 1 species of Rabdosia and 3 species of Solenostemon which are indigenous, semi-naturalized or widely cultivated in Southern Africa. Descriptions, illustrations, keys and distribution data are provided. The following new names are published:  P. mutabilis Codd,  P. psammophilus Codd,  P. rubropunctatus Codd,  P. unguentarius Codd,  P. ornatus Codd (nom. nov. for Coleus comosus Hochst. ex Guerke, P. zatarhendi (Forsk. E. A. Bruce var.  tomentosus (Benth. Codd, —var.  woodii  (Guerke Codd,  P. madagascariensis (Pers. Benth. var.  aliciae  Codd,  Solenostemon scutellarioides (L. Codd and  S. shirensis (Guerke Codd.

  19. Effects of Erosion from Mounds of Different Termite Genera on Distinct Functional Grassland Types in an African Savannah.

    Science.gov (United States)

    Gosling, Cleo M; Cromsigt, Joris P G M; Mpanza, Nokukhanya; Olff, Han

    A key aspect of savannah vegetation heterogeneity is mosaics formed by two functional grassland types, bunch grasslands, and grazing lawns. We investigated the role of termites, important ecosystem engineers, in creating high-nutrient patches in the form of grazing lawns. Some of the ways termites can contribute to grazing lawn development is through erosion of soil from aboveground mounds to the surrounding soil surface. This may alter the nutrient status of the surrounding soils. We hypothesize that the importance of this erosion varies with termite genera, depending on feeding strategy and mound type. To test this, we simulated erosion by applying mound soil from three termite genera ( Macrotermes , Odontotermes , and Trinervitermes ) in both a field experiment and a greenhouse experiment. In the greenhouse experiment, we found soils with the highest macro nutrient levels (formed by Trinervitermes ) promoted the quality and biomass of both a lawn ( Digitaria longiflora ) and a bunch ( Sporobolus pyramidalis ) grass species. In the field we found that soils with the highest micro nutrient levels (formed by Macrotermes ) showed the largest increase in cover of grazing lawn species. By linking the different nutrient availability of the mounds to the development of different grassland states, we conclude that the presence of termite mounds influences grassland mosaics, but that the type of mound plays a crucial role in determining the nature of the effects.

  20. Spatio-temporal variation in density of microphytoplankton genera in ...

    African Journals Online (AJOL)

    This seasonal shift may reflect how these species respond differently to environmental change, which could have implications for primary production at spatial and temporal scales. Keywords: chlorophyll a, cyanobacteria, diatoms, dinoflagellates, interannual variation, physico-chemical, seasonal variation. African Journal of ...

  1. The lichen genera Dictyomeridium and Polymeridium (Trypetheliales: Trypetheliaceae in India

    Directory of Open Access Journals (Sweden)

    Komal Kumar INGLE

    2017-02-01

    Full Text Available Taxonomic account of Dictyomeridium and Polymeridium are presented from India. Polymeridium cinereonigricans (Vain. R.C. Harris, P. pleurothecium R.C. Harris and P. submuriforme Aptroot are reported as new records for India. An artificial key to all the species known so far from India along with notes on their distribution and ecology is also presented.

  2. Phylogeny and taxonomy of Echinodontium and related genera

    Science.gov (United States)

    Shi-Liang Liu; Yan Zhao; Yu-Cheng Dai; Karen K. Nakasone; Shuang-Hui. He

    2017-01-01

    The phylogenetic relationship of eight species of Echinodontium, Laurilia, and Perplexostereum of Russulales were analyzed based on sequences of the nuc rDNA ITS1-5.8S-ITS2 (ITS [internal transcribed spacer]) and D1–D2 domains of nuc 28S rDNA (28S). Our results show that Echinodontium tinctorium, E. ryvardenii...

  3. Polyphyly of the hawk genera Leucopternis and Buteogallus (Aves, Accipitridae): multiple habitat shifts during the Neotropical buteonine diversification.

    Science.gov (United States)

    Amaral, Fabio S Raposo do; Miller, Matthew J; Silveira, Luís Fábio; Bermingham, Eldredge; Wajntal, Anita

    2006-02-07

    The family Accipitridae (hawks, eagles and Old World vultures) represents a large radiation of predatory birds with an almost global distribution, although most species of this family occur in the Neotropics. Despite great morphological and ecological diversity, the evolutionary relationships in the family have been poorly explored at all taxonomic levels. Using sequences from four mitochondrial genes (12S, ATP8, ATP6, and ND6), we reconstructed the phylogeny of the Neotropical forest hawk genus Leucopternis and most of the allied genera of Neotropical buteonines. Our goals were to infer the evolutionary relationships among species of Leucopternis, estimate their relationships to other buteonine genera, evaluate the phylogenetic significance of the white and black plumage patterns common to most Leucopternis species, and assess general patterns of diversification of the group with respect to species' affiliations with Neotropical regions and habitats. Our molecular phylogeny for the genus Leucopternis and its allies disagrees sharply with traditional taxonomic arrangements for the group, and we present new hypotheses of relationships for a number of species. The mtDNA phylogenetic trees derived from analysis of the combined data posit a polyphyletic relationship among species of Leucopternis, Buteogallus and Buteo. Three highly supported clades containing Leucopternis species were recovered in our phylogenetic reconstructions. The first clade consisted of the sister pairs L. lacernulatus and Buteogallus meridionalis, and Buteogallus urubitinga and Harpyhaliaetus coronatus, in addition to L. schistaceus and L. plumbeus. The second clade included the sister pair Leucopternis albicollis and L. occidentalis as well as L. polionotus. The third lineage comprised the sister pair L. melanops and L. kuhli, in addition to L. semiplumbeus and Buteo buteo. According to our results, the white and black plumage patterns have evolved at least twice in the group. Furthermore

  4. Polyphyly of the hawk genera Leucopternis and Buteogallus (Aves, Accipitridae: multiple habitat shifts during the Neotropical buteonine diversification

    Directory of Open Access Journals (Sweden)

    Bermingham Eldredge

    2006-02-01

    Full Text Available Abstract Background The family Accipitridae (hawks, eagles and Old World vultures represents a large radiation of predatory birds with an almost global distribution, although most species of this family occur in the Neotropics. Despite great morphological and ecological diversity, the evolutionary relationships in the family have been poorly explored at all taxonomic levels. Using sequences from four mitochondrial genes (12S, ATP8, ATP6, and ND6, we reconstructed the phylogeny of the Neotropical forest hawk genus Leucopternis and most of the allied genera of Neotropical buteonines. Our goals were to infer the evolutionary relationships among species of Leucopternis, estimate their relationships to other buteonine genera, evaluate the phylogenetic significance of the white and black plumage patterns common to most Leucopternis species, and assess general patterns of diversification of the group with respect to species' affiliations with Neotropical regions and habitats. Results Our molecular phylogeny for the genus Leucopternis and its allies disagrees sharply with traditional taxonomic arrangements for the group, and we present new hypotheses of relationships for a number of species. The mtDNA phylogenetic trees derived from analysis of the combined data posit a polyphyletic relationship among species of Leucopternis, Buteogallus and Buteo. Three highly supported clades containing Leucopternis species were recovered in our phylogenetic reconstructions. The first clade consisted of the sister pairs L. lacernulatus and Buteogallus meridionalis, and Buteogallus urubitinga and Harpyhaliaetus coronatus, in addition to L. schistaceus and L. plumbeus. The second clade included the sister pair Leucopternis albicollis and L. occidentalis as well as L. polionotus. The third lineage comprised the sister pair L. melanops and L. kuhli, in addition to L. semiplumbeus and Buteo buteo. According to our results, the white and black plumage patterns have evolved

  5. Species delimitation in the reef coral genera Echinophyllia and Oxypora (Scleractinia, Lobophylliidae) with a description of two new species

    KAUST Repository

    Arrigoni, Roberto; Berumen, Michael L.; Chen, Chaolun Allen; Terraneo, Tullia Isotta; Baird, Andrew H.; Payri, Claude; Benzoni, Francesca

    2016-01-01

    Scleractinian corals are affected by environment-induced phenotypic plasticity and intraspecific morphological variation caused by genotype. In an effort to identify new strategies for resolving this taxonomic issue, we applied a molecular approach

  6. Molecular systematics of selected genera of subfamily mimosoidae-fabaceae

    International Nuclear Information System (INIS)

    Shinwari, Z.K.; Jamil, K.; Zahra, N.B.

    2014-01-01

    Family Mimosoidae-Fabaceae is of economic importance to local communities for its medicinal usage. It has commercial value, but the parts sold in the market are difficult to identify on the basis of morphological characters and therefore needs molecular systematics approaches. Hence, the utility of potential DNA barcodes for selected Acacia and Albizia species by using three cpDNA regions rbcL, matK and trnH-psbA was tested in this study. Our study suggests that the rbcL region can be used to identify these species and discriminate among them more effectively than matK and trnH-psbA. The latter regions proved to be less successful in sequencing particularly trnH-psbA. Therefore, rbcL is an improved and efficient tool for species identification of these medicinal plants and may be recommended for a broad series of subfamily Mimosoideae (Family: Fabaceae) plants, making it a potential DNA barcode for these taxa. Sequence data obtained from rbcL and matK also indicated that Acacia and Albizia are polyphyletic. The phylogenetic analysis on the basis of rbcL proved that Acacia nilotica and Acacia nilotica ssp. hemispherica are closely related as they form the sister groups. (author)

  7. Diatoms from the Colombian and Peruvian Amazon: the Genera Encyonema, Encyonopsis and Gomphonema (Cymbellales: Bacillariophyceae

    Directory of Open Access Journals (Sweden)

    Amelia A Vouilloud

    2010-03-01

    Full Text Available Diatoms from the Colombian and Peruvian Amazon: the Genera Encyonema, Encyonopsis and Gomphonema (Cymbellales, Bacillariophyceae. The diatom flora of the Colombian and Peruvian Amazon is far less studied than the flora of the Brazilian sector of the basin. Here we present results related to the genera Encyonema, Encyonopsis and Gomphonema. Plankton and periphyton samples were collected in lotic and lentic waterbodies from the Amazonian-Andean region, the Amazon River, Japurá River and Porvenir River basins during 1993, 1994, 2001 and 2003. At each sampling station pH, temperature, water transparency and conductivity were registered. Samples were analyzed with phase contrast microscope (LM and scanning electron microscope (SEM. Ten taxa are new records for the area; Encyonema for the Peruvian and Colombian Amazon and Encyonopsis for the Colombian Sector. Encyonema neogracile var. tenuipunctatum, E. vulgare, Encyonopsis frequentis, Gomphonema augur var. sphaerophorum and G. contraturris are recorded for the first time in Colombia; Encyonema venezolanum and G. neoapiculatum in Colombia and Peru and the latter also for Amazonia. E. angustecapitatum was mentioned in Colombia before at a pond located at 3000m asl. We describe a new species from Porvenir River, Amazonas, Colombia: Encyonema amazonianum. Rev. Biol. Trop. 58 (1: 45-62. Epub 2010 March 01.La flora diatomológica de la Amazonia Colombiana y Peruana está mucho menos estudiada que la flora del sector brasilero. Se presentan los resultados de los géneros Encyonema, Encyonopsis y Gomphonema. Muestras de plancton y perifiton fueron colectadas en ambientes lóticos y lénticos de la región amazónica-andina, en los ríos Amazonas, Japurá y Porvenir durante 1993, 1994, 2001 y 2003. En cada estación de muestreo se realizaron mediciones de pH, temperatura, transparencia del agua y conductividad. Las muestras fueron analizadas con microscopio óptico con contraste de fases y microscopio electr

  8. Annotated catalogue of the Tachinidae (Insecta, Diptera) of the Afrotropical Region, with the description of seven new genera

    Science.gov (United States)

    O’Hara, James E.; Cerretti, Pierfilippo

    2016-01-01

    Abstract The Tachinidae of the Afrotropical Region are catalogued and seven genera and eight species are newly described. There are 237 genera and 1126 species recognized, of which 101 genera and 1043 species are endemic to the region. The catalogue is based on examination of the primary literature comprising about 525 references as well as numerous name-bearing types and other specimens housed in collections. Taxa are arranged hierarchically and alphabetically under the categories of subfamily, tribe, genus, subgenus (where recognized), species, and rarely subspecies. Nomenclatural information is provided for all genus-group and species-group names, including lists of synonyms (mostly restricted to Afrotropical taxa) and name-bearing type data. Species distributions are recorded by country within the Afrotropical Region and by larger geographical divisions outside the region. Additional information is given in the form of notes, numbering about 300 in the catalogue section. Seven genera and eight species are described as new: Afrophylax Cerretti & O’Hara with type species Sturmia aureiventris Villeneuve, 1910, gen. n. (Exoristinae, Eryciini); Austrosolieria Cerretti & O’Hara with type species Austrosolieria londti Cerretti & O’Hara, gen. n. and sp. n. (South Africa) and Austrosolieria freidbergi Cerretti & O’Hara, sp. n. (Malawi) (Tachininae, Leskiini); Carceliathrix Cerretti & O’Hara with type species Phorocera crassipalpis Villeneuve, 1938, gen. n. (Exoristinae, Eryciini); Filistea Cerretti & O’Hara with type species Viviania aureofasciata Curran, 1927, gen. n. and Filistea verbekei Cerretti & O’Hara, sp. n. (Cameroon, D.R. Congo, Uganda) (Exoristinae, Blondeliini); Mesnilotrix Cerretti & O’Hara with type species Dexiotrix empiformis Mesnil, 1976, gen. n. (Dexiinae, Dexiini); Myxophryxe Cerretti & O’Hara with type species Phorocera longirostris Villeneuve, 1938, gen. n., Myxophryxe murina Cerretti & O’Hara, sp. n. (South Africa), Myxophryxe

  9. A QUICK KEY TO THE SUBFAMILIES AND GENERA OF ANTS OF THE SAVANNAH RIVER SITE, AIKEN, SC

    Energy Technology Data Exchange (ETDEWEB)

    Martin, D

    2006-10-04

    This taxonomic key was devised to support development of a Rapid Bioassessment Protocol using ants at the Savannah River Site. The emphasis is on ''rapid'' and, because the available keys contained a large number of genera not known to occur at the Savannah River Site, we found that the available keys were unwieldy. Because these keys contained more genera than we would likely encounter and because this larger number of genera required both more couplets in the key and often required examination of characters that are difficult to assess without higher magnifications (60X or higher) more time was required to process samples. In developing this set of keys I recognize that the character sets used may lead to some errors but I believe that the error rate will be small and, for the purpose of rapid bioassessment, this error rate will be acceptable provided that overall sample sizes are adequate. Oliver and Beattie (1996a, 1996b) found that for rapid assessment of biodiversity the same results were found when identifications were done to morphospecies by people with minimal expertise as when the same data sets were identified by subject matter experts. Basset et al. (2004) concluded that it was not as important to correctly identify all species as it was to be sure that the study included as many functional groups as possible. If your study requires high levels of accuracy, it is highly recommended that when you key out a specimen and have any doubts concerning the identification, you should refer to keys in Bolton (1994) or to the other keys used to develop this area specific taxonomic key.

  10. Maximizing the Diversity of Ensemble Random Forests for Tree Genera Classification Using High Density LiDAR Data

    Directory of Open Access Journals (Sweden)

    Connie Ko

    2016-08-01

    Full Text Available Recent research into improving the effectiveness of forest inventory management using airborne LiDAR data has focused on developing advanced theories in data analytics. Furthermore, supervised learning as a predictive model for classifying tree genera (and species, where possible has been gaining popularity in order to minimize this labor-intensive task. However, bottlenecks remain that hinder the immediate adoption of supervised learning methods. With supervised classification, training samples are required for learning the parameters that govern the performance of a classifier, yet the selection of training data is often subjective and the quality of such samples is critically important. For LiDAR scanning in forest environments, the quantification of data quality is somewhat abstract, normally referring to some metric related to the completeness of individual tree crowns; however, this is not an issue that has received much attention in the literature. Intuitively the choice of training samples having varying quality will affect classification accuracy. In this paper a Diversity Index (DI is proposed that characterizes the diversity of data quality (Qi among selected training samples required for constructing a classification model of tree genera. The training sample is diversified in terms of data quality as opposed to the number of samples per class. The diversified training sample allows the classifier to better learn the positive and negative instances and; therefore; has a higher classification accuracy in discriminating the “unknown” class samples from the “known” samples. Our algorithm is implemented within the Random Forests base classifiers with six derived geometric features from LiDAR data. The training sample contains three tree genera (pine; poplar; and maple and the validation samples contains four labels (pine; poplar; maple; and “unknown”. Classification accuracy improved from 72.8%; when training samples were

  11. A preliminary list of bee genera in the Kingdom of Saudi Arabia (Hymenoptera: Apoidea

    Directory of Open Access Journals (Sweden)

    Michael S. Engel

    2013-01-01

    Full Text Available A brief overview of those bee genera and subgenera occurring in the Kingdom of Saudi Arabia is provided. In total 22 genera are currently documented in the literature for the country, although a further 17 genera undoubtedly occur here based on extralimital records. The lists provided here will serve as a baseline for biodiversity studies on the bee fauna of the country that are presently underway. The anthidiine genus Icteranthidium Michener (Megachilidae and the dasypodaine genus Promelitta Warncke (Melittidae are newly recorded for the country.

  12. Phytochemistry, biological activities and economical uses of the genus S t e r c u l i a and the related genera: A reveiw

    Directory of Open Access Journals (Sweden)

    Moshera Mohamed El-Sherei

    2016-06-01

    Full Text Available The genus Sterculia is represented by 200 species which are widespread mainly in tropical and subtropical regions. Some of the Sterculia species are classified under different genera based on special morphological features. These are Pterygota Schott & Endl., Firmiana Marsili, Brachychiton Schott & Endl., Hildegardia Schott & Endl., Pterocymbium R.Br. and Scaphium Schott & Endl. The genus Sterculia and the related genera contain mainly flavonoids, whereas terpenoids, phenolic acids, phenylpropanoids, alkaloids, and other types of compounds including sugars, fatty acids, lignans and lignins are of less distribution. The biological activities such as antioxidant, anti-inflammatory, antimicrobial and cytotoxic activities have been reported for several species of the genus. On the other hand, there is confusion on the systematic position and classification of the genus Sterculia. However, the wide range of the reported flavonoids in the present review is quite significant and can act as a guide for further studies from the chemosystematic point of view. Also the value of the genus Sterculia and its related genera in the traditional medicine and their effective biological activities led to the possibilities of finding new sources of drugs for prospect applications.

  13. Molecular analysis of the genera eremopyrum (ledeb). jaub. and spach and agropyron gaertner (poaceae) by pcr methods

    International Nuclear Information System (INIS)

    Yilmaz, R.; Cabi, E.; Dogan, M.

    2014-01-01

    RAPD-PCR (Random Amplified Polymorphic DNA Polymerase Chain Reaction) and Post PCR (Polymerase Chain Reaction) Melting Curve Analysis (MCA) have been used to investigate the pattern of genetic variation among some species in the genera Eremopyrum (Ledeb.) Jaub. and Spach and Agropyron Gaertner (Poaceae). Thirteen primers have been used in the study based on the RAPD-PCR and MCA analyses. Each species produced a distinct pattern of DNA fragments which have been used as a measure of the degree of relationship between species by means of using the RAPD-PCR results with three primers selected for identifying the genetic similarities. Polymorphic melting profiles have been obtained with Post PCR MCA method using three primers. Genetic similarities are calculated for all the species studied with RAPD-PCR and MCA methods, the dendrograms are obtained with the MVSP (Multi Variate Statistical Package) software using UPGMA (Unweighted Pair Group Method with Arithmetic Averages) and Jaccard's Coefficient. Polymorphism between 18 populations of Eremopyrum and 6 Agropyron populations and within the species are determined by using RAPD-PCR and Post PCR melting curve analysis (MCA) respectively. (author)

  14. Phylogenetic placement of Dapisostemon gen. nov. and Streptostemon, two tropical heterocytous genera (Cyanobacteria)

    Czech Academy of Sciences Publication Activity Database

    Hentschke, G. S.; Johansen, J. R.; Pietrasiak, N.; Fiore, M.F.; Rigonato, J.; Sant’Anna, C. L.; Komárek, Jiří

    2016-01-01

    Roč. 245, č. 2 (2016), s. 129-143 ISSN 1179-3155 Institutional support: RVO:67985939 Keywords : new cyanobacterial genera * phylogeny * tropical habitats Subject RIV: EF - Botanics Impact factor: 1.240, year: 2016

  15. Molecular phylogeny of Phoma and allied anamorph genera: towards a reclassification of the Phoma complex

    NARCIS (Netherlands)

    Gruyter, de J.; Aveskamp, M.M.; Woudenberg, J.H.C.; Verkley, G.J.M.; Groenewald, J.Z.; Crous, P.W.

    2009-01-01

    The present generic concept of Phoma is broadly defined, with nine sections being recognised based on morphological characters. Teleomorph states of Phoma have been described in the genera Didymella, Leptosphaeria, Pleospora and Mycosphaerella, indicating that Phoma anamorphs represent a

  16. How reliably can northeast Atlantic sand lances of the genera Ammodytes and Hyperoplus be distinguished? A comparative application of morphological and molecular methods

    Directory of Open Access Journals (Sweden)

    Ralf Thiel

    2016-09-01

    Full Text Available Accurate stock assessments for each of the dominant species of sand lances in the northeast Atlantic Ocean and adjacent areas are not available due to the lack of a reliable identification procedure; therefore, appropriate measures of fisheries management or conservation of sand lances cannot be implemented. In this study, detailed morphological and molecular features are assessed to discriminate between four species of sand lances belonging to the genera Ammodytes and Hyperoplus. Morphological characters described by earlier authors as useful for identification of the genera are confirmed, and two additional distinguishing characters are added. A combination of the following morphological characters is recommended to distinguish between the genera Hyperoplus and Ammodytes: the protrusibility of the premaxillae, the presence of hooked ends of the prevomer, the number of dermal plicae, and the pectoral-fin length as a percentage of the standard length. The discriminant function analysis revealed that morphometric data are not very useful to distinguish the species of each of the two genera. The following meristic characters improve the separation of H. lanceolatus from H. immaculatus: the number of lower arch gill rakers, total number of gill rakers, numbers of caudal vertebrae and total vertebrae, and numbers of dorsal-fin and anal-fin rays. It is confirmed that A. tobianus differs from A. marinus by its belly scales that are organised in tight chevrons, scales which are present over the musculature at the base of the caudal fin, as well as by the lower numbers of dermal plicae, dorsal-fin rays, and total vertebrae. In contrast to the morphological data, mitochondrial COI sequences (DNA barcodes failed to separate unambiguously the four investigated species. Ammodytes tobianus and H. lanceolatus showed an overlap between intraspecific and interspecific K2P genetic distances and cannot be reliably distinguished using the common DNA barcoding

  17. A COMPARITIVE STUDY USING GEOMETRIC AND VERTICAL PROFILE FEATURES DERIVED FROM AIRBORNE LIDAR FOR CLASSIFYING TREE GENERA

    Directory of Open Access Journals (Sweden)

    C. Ko

    2012-07-01

    Full Text Available We present a comparative study between two different approaches for tree genera classification using descriptors derived from tree geometry and those derived from the vertical profile analysis of LiDAR point data. The different methods provide two perspectives for processing LiDAR point clouds for tree genera identification. The geometric perspective analyzes individual tree crowns in relation to valuable information related to characteristics of clusters and line segments derived within crowns and overall tree shapes to highlight the spatial distribution of LiDAR points within the crown. Conversely, analyzing vertical profiles retrieves information about the point distributions with respect to height percentiles; this perspective emphasizes of the importance that point distributions at specific heights express, accommodating for the decreased point density with respect to depth of canopy penetration by LiDAR pulses. The targeted species include white birch, maple, oak, poplar, white pine and jack pine at a study site northeast of Sault Ste. Marie, Ontario, Canada.

  18. Species longevity in North American fossil mammals.

    Science.gov (United States)

    Prothero, Donald R

    2014-08-01

    Species longevity in the fossil record is related to many paleoecological variables and is important to macroevolutionary studies, yet there are very few reliable data on average species durations in Cenozoic fossil mammals. Many of the online databases (such as the Paleobiology Database) use only genera of North American Cenozoic mammals and there are severe problems because key groups (e.g. camels, oreodonts, pronghorns and proboscideans) have no reliable updated taxonomy, with many invalid genera and species and/or many undescribed genera and species. Most of the published datasets yield species duration estimates of approximately 2.3-4.3 Myr for larger mammals, with small mammals tending to have shorter species durations. My own compilation of all the valid species durations in families with updated taxonomy (39 families, containing 431 genera and 998 species, averaging 2.3 species per genus) yields a mean duration of 3.21 Myr for larger mammals. This breaks down to 4.10-4.39 Myr for artiodactyls, 3.14-3.31 Myr for perissodactyls and 2.63-2.95 Myr for carnivorous mammals (carnivorans plus creodonts). These averages are based on a much larger, more robust dataset than most previous estimates, so they should be more reliable for any studies that need species longevity to be accurately estimated. © 2013 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

  19. The genera Cosmopterix Hübner and Pebobs Hodges in the New World with special attention to the Neotropical fauna (Lepidoptera: Cosmopterigidae)

    OpenAIRE

    Koster, J.C.

    2010-01-01

    The genera Cosmopterix Hübner, [1825] and Pebobs Hodges, 1978 (Cosmopterigidae) of the New World are revised, for the Neotropical fauna for the first time. A total of 102 species is recognized and 49 species are described as new: Cosmopterix adrastea spec. nov., C. amalthea spec. nov., C. ananke spec. nov., C. argentifera spec. nov., C. aurotegulae spec. nov., C. beckeri spec. nov., C. callisto spec. nov., C. carpo spec. nov., C. chaldene spec. nov., C. chalupae spec. nov., C. erinome spec. n...

  20. The atyid shrimps of Fiji with description of a new species

    NARCIS (Netherlands)

    Choy, S.C.

    1991-01-01

    Fourteen species of shrimps belonging to four genera of the family Atyidae are reported from the Fiji Islands. Three genera are represented by only one species each: Antecaridina lauensis (Edmondson, 1935), Atyoida pilipes (Newport, 1847) and Atyopsis spinipes (Newport, 1847) while the fourth,

  1. Antimicrobial effect of probiotics on bacterial species from dental plaque.

    Science.gov (United States)

    Zambori, Csilla; Morvay, Attila Alexandru; Sala, Claudia; Licker, Monica; Gurban, Camelia; Tanasie, Gabriela; Tirziu, Emil

    2016-03-31

    The antimicrobial role of probiotic Lactobacillus casei subspecies casei DG (L. casei DG) and of the mix culture of probiotic Lactobacillus acidophilus LA-5 and Bifidobacterium BB-12 was tested on species of Staphylococcus, Streptococcus, Pasteurella, and Neisseria genera from supragingival sites from dogs with dental disease of different breed, age, sex, weight, and diet. The research was conducted on these four genera because of their importance in zoonotic infections after dog bites. Species from Staphylococcus, Streptococcus, Pasteurella, and Neisseria genera were isolated and identified. To test the antimicrobial efficacy of L. casei DG and the mixed culture of probiotic L. acidophilus LA-5 and Bifidobacterium bifidum BB-12 on the pathogenic species, the agar overlay method was used. L. casei DG had a bactericidal effect on all analyzed species isolated from Staphylococcus, Streptococcus, Pasteurella, and Neisseria genera after 24 hours of incubation. The mixed probiotic culture made up of L. acidophilus LA-5 and Bifidobacterium BB-12 species had no bactericidal effect on the species of Staphylococcus and Streptococcus genera, which were resistant. However, it had a bacteriostatic effect on several species of Pasteurella and Neisseria genera. This work highlights the antimicrobial potential of probiotics in vitro, demonstrating that the probiotic L. casei DG has a bactericidal effect on all analyzed species isolated from dental plaque and that the mix culture of probiotic L. acidophilus LA-5 and Bifidobacterium BB-12 has only a bacteriostatic effect.

  2. Feasibility of nuclear ribosomal region ITS1 over ITS2 in barcoding taxonomically challenging genera of subtribe Cassiinae (Fabaceae

    Directory of Open Access Journals (Sweden)

    Priyanka Mishra

    2016-12-01

    Full Text Available Premise of the Study The internal transcribed spacer (ITS region is situated between 18S and 26S in a polycistronic rRNA precursor transcript. It had been proved to be the most commonly sequenced region across plant species to resolve phylogenetic relationships ranging from shallow to deep taxonomic levels. Despite several taxonomical revisions in Cassiinae, a stable phylogeny remains elusive at the molecular level, particularly concerning the delineation of species in the genera Cassia, Senna and Chamaecrista. This study addresses the comparative potential of ITS datasets (ITS1, ITS2 and concatenated in resolving the underlying morphological disparity in the highly complex genera, to assess their discriminatory power as potential barcode candidates in Cassiinae. Methodology A combination of experimental data and an in-silico approach based on threshold genetic distances, sequence similarity based and hierarchical tree-based methods was performed to decipher the discriminating power of ITS datasets on 18 different species of Cassiinae complex. Lab-generated sequences were compared against those available in the GenBank using BLAST and were aligned through MUSCLE 3.8.31 and analysed in PAUP 4.0 and BEAST1.8 using parsimony ratchet, maximum likelihood and Bayesian inference (BI methods of gene and species tree reconciliation with bootstrapping. DNA barcoding gap was realized based on the Kimura two-parameter distance model (K2P in TaxonDNA and MEGA. Principal Findings Based on the K2P distance, significant divergences between the inter- and intra-specific genetic distances were observed, while the presence of a DNA barcoding gap was obvious. The ITS1 region efficiently identified 81.63% and 90% of species using TaxonDNA and BI methods, respectively. The PWG-distance method based on simple pairwise matching indicated the significance of ITS1 whereby highest number of variable (210 and informative sites (206 were obtained. The BI tree-based methods

  3. Host-Symbiont Cospeciation of Termite-Gut Cellulolytic Protists of the Genera Teranympha and Eucomonympha and their Treponema Endosymbionts.

    Science.gov (United States)

    Noda, Satoko; Shimizu, Daichi; Yuki, Masahiro; Kitade, Osamu; Ohkuma, Moriya

    2018-03-29

    Cellulolytic flagellated protists inhabit the hindgut of termites. They are unique and essential to termites and related wood-feeding cockroaches, enabling host feeding on cellulosic matter. Protists of two genera in the family Teranymphidae (phylum Parabasalia), Eucomonympha and Teranympha, are phylogenetically closely related and harbor intracellular endosymbiotic bacteria from the genus Treponema. In order to obtain a clearer understanding of the evolutionary history of this triplex symbiotic relationship, the molecular phylogenies of the three symbiotic partners, the Teranymphidae protists, their Treponema endosymbionts, and their host termites, were inferred and compared. Strong congruence was observed in the tree topologies of all interacting partners, implying their cospeciating relationships. In contrast, the coevolutionary relationship between the Eucomonympha protists and their endosymbionts was more complex, and evidence of incongruence against cospeciating relationships suggested frequent host switches of the endosymbionts, possibly because multiple Eucomonympha species are present in the same gut community. Similarities in the 16S rRNA and gyrB gene sequences of the endosymbionts were higher among Teranympha spp. (>99.25% and >97.2%, respectively), whereas those between Teranympha and Eucomonympha were lower (<97.1% and <91.9%, respectively). In addition, the endosymbionts of Teranympha spp. formed a phylogenetic clade distinct from those of Eucomonympha spp. Therefore, the endosymbiont species of Teranympha spp., designated here as "Candidatus Treponema teratonymphae", needs to be classified as a species distinct from the endosymbiont species of Eucomonympha spp.

  4. Taxonomic key for the genera of Elmidae (Coleoptera, Byrrhoidea occurring in Goiás State, Brazil, including new records and distributional notes

    Directory of Open Access Journals (Sweden)

    Felipe F. Barbosa

    2013-06-01

    Full Text Available A taxonomic key for the genera of Elmidae (Coleoptera, Byrrhoidea occurring in Goiás State, Brazil, including new records and distributional notes. Despite their great diversity and high abundance in Neotropical aquatic environments, the fauna of Elmidae remains practically unknown in some areas and even entire biomes in this region. In this work we bring, for the first time, faunistic data for the Elmidae of central Brazil. The aim of this work was to inventory the Elmidae fauna in central, southwestern and southeastern Goiás State, Brazil and to produce a taxonomic key, at genus level, for adults from the studied region. The taxonomic key presented herein offers means for the identification of all the 13 genera known to occur in Goiás, 11 of them being new records for the State. Moreover, the number of named species registered for Goiás increased from one to nine.

  5. Range extensions along western Atlantic for Epialtidae crabs (Brachyura, Majoidea genera Acanthonyx Latreille, 1828 and Epialtus H. Milne Edwards, 1834

    Directory of Open Access Journals (Sweden)

    Ana Francisca Tamburus

    Full Text Available The present study provided information extending the known geographical distribution of three species of majoid crabs, the epialtids Acanthonyx dissimulatus Coelho, 1993, Epialtus bituberculatus H. Milne Edwards, 1834, and E. brasiliensis Dana, 1852. Specimens of both genera from different carcinological collections were studied by comparing morphological characters. We provide new data that extends the geographical distributions of E. bituberculatus to the coast of the states of Paraná and Santa Catarina (Brazil, and offer new records from Belize and Costa Rica. Epialtus brasiliensis is recorded for the first time in the state of Rio Grande do Sul (Brazil, and A. dissimulatus is reported from Quintana Roo, Mexico. The distribution of A. dissimulatus, previously known as endemic to Brazil, has a gap between the states of Espírito Santo and Rio de Janeiro. However, this restricted southern distribution is herein amplified by the Mexican specimens.

  6. Polyphyly of the spring-parsleys (Cymopterus): molecular and morphological evidence suggests complex relationships among the perennial endemic genera of western North American Apiaceae

    International Nuclear Information System (INIS)

    Downie, S.R.; Hartman, R.L.; Sun, F.-J.; Katz-Downie, D.S.

    2002-01-01

    Cladistic analyses of DNA sequences from the nuclear rDNA internal transcribed spacer region and cpDNA rps16 intron and, for a subset of taxa, the cpDNA trnF-trnL-trnT locus were carried out to evaluate the monophyly of Cymopterus and to ascertain its phylogenetic placement among the other perennial genera of Apiaceae (Umbelliferae) subfamily Apioideae endemic to western North America. To elucidate patterns in the evolution of specific fruit characters and to evaluate their utility in circumscribing genera unambiguously, additional evidence was procured from cross-sections of mature fruits and the results of cladistic analysis of 25 morphological characters. Analyses of the partitioned data sets resulted in weakly supported and largely unresolved phylogenetic hypotheses, possibly due to the rapid radiation of the group, whereas the combined analysis of all molecular evidence resulted in a well-resolved phylogeny with higher bootstrap support. The traditionally used fruit characters of wing shape and composition and orientation of mericarp compression are highly variable. The results of these analyses reveal that Cymopterus and Lomatium, the two largest genera of western North American Apiaceae, are polyphyletic, and that their species are inextricably linked with those of other endemic perennial genera of the region (such as, Aletes, Musineon, Oreoxis, Pseudocymopterus, Pteryxia, and Tauschia), many of which are also not monophyletic. Prior emphasis on characters of the fruit in all systems of classification of the group has led to highly artificial assemblages of species. A complete reassessment of generic limits of all western endemic Apiaceae is required, as is further systematic study of this intractable group. (author)

  7. Taxonomy and biogeography of African fruit bats (Mammalia, Megachiroptera). 2. The genera Micropteropus Matschie, 1899, Epomops Gray, 1870, Hypsignathus H. Allen, 1861, Nanonycteris Matschie, 1899, and Plerotes Andersen, 1910

    NARCIS (Netherlands)

    Bergmans, Wim

    1989-01-01

    The genera Micropteropus Matschie, 1899, Epomops Gray, 1870, Hypsignathus H. Allen, 1861, Nanonycteris Matschie, 1899 and Plerotes Andersen, 1910 and the species assigned to them are reviewed. All the currently recognized taxa are maintained except subspecific partitions in Epomops franqueti (Tomes,

  8. Characterization of Aspergillus species associated with ...

    African Journals Online (AJOL)

    About 82 triphala powder samples were analyzed for the association of different fungi. Results reveal the predominance of Aspergillus as the major genera with six predominant species namely, A. niger, A. flavus, A. fumigatus, A. terreus, A. nidulans and A. amstelodami. Therefore, these six isolated Aspergillus species were ...

  9. Two new species in the subfamily Perlinae (Plecoptera, Perlidae) from China.

    Science.gov (United States)

    Wang, Hong-Liang; Wang, Guo-Quan; Li, Wei-Hai

    2013-01-01

    Two species in the genera Neoperla and Kamimuria (Plecoptera: Perlidae) from China are described as new: Kamimuria guangxia sp. n., and Neoperla mesostyla sp. n. The new species are compared to similar taxa.

  10. Two new species in the subfamily Perlinae (Plecoptera, Perlidae from China

    Directory of Open Access Journals (Sweden)

    Wang Hong-Liang

    2013-07-01

    Full Text Available Two species in the genera Neoperla and Kamimuria (Plecoptera: Perlidae from China are described as new: Kamimuria guangxia sp. n., and Neoperla mesostyla sp. n. The new species are compared to similar taxa.

  11. North-south diversity of Scolecithricidae species (Copepoda: Calanoida) in the Indian Ocean

    Digital Repository Service at National Institute of Oceanography (India)

    Gopalakrishnan, T.C.; Balachandran, T.

    The effectiveness of north-south hydrographical barriers in restricting the distributions of Scolecithricidae species (Copepoda:Calanoida) in the euphotic zone of the Indian Ocean was studied. Twenty seven species belonging to 7 genera were...

  12. Species composition, abundance and distribution of hydromedusae from Dharamtar estuarine system, adjoining Bombay Harbour

    Digital Repository Service at National Institute of Oceanography (India)

    Santhakumari, V.; Tiwari, L.R.; Nair, V.R.

    Species composition, abundance and distribution of hydromedusae from Dharamtar estuarine system, adjoining Bombay Harbour, Maharashtra, India were investigated during 1984-1985. Twenty six species belonging to 19 genera were obtained from this area...

  13. Twining genera of (0,4) supersymmetric sigma models on K3

    International Nuclear Information System (INIS)

    Harrison, Sarah; Kachru, Shamit; Paquette, Natalie M.

    2014-01-01

    Conformal field theories with (0,4) worldsheet supersymmetry and K3 target can be used to compactify the E 8 ×E 8 heterotic string to six dimensions in a supersymmetric manner. The data specifying such a model includes an appropriate configuration of 24 gauge instantons in the E 8 ×E 8 gauge group to satisfy the constraints of anomaly cancellation. In this note, we compute twining genera — elliptic genera with appropriate insertions of discrete symmetry generators in the trace — for (0,4) theories with various instanton embeddings. We do this by constructing linear sigma models which flow to the desired conformal field theories, and using the techniques of localization. We present several examples of such twining genera which are consistent with a moonshine relating these (0,4) models to the finite simple sporadic group M 24

  14. Oil-producing flowers within the Iridoideae (Iridaceae): evolutionary trends in the flowers of the New World genera.

    Science.gov (United States)

    Chauveau, Olivier; Eggers, Lilian; Souza-Chies, Tatiana T; Nadot, Sophie

    2012-08-01

    Oil-producing flowers related to oil-bee pollination are a major innovation in Neotropical and Mexican Iridaceae. In this study, phylogenetic relationships were investigated among a wide array of New World genera of the tribes Sisyrinchieae, Trimezieae and Tigridieae (Iridaceae: Iridoideae) and the evolution of floral glandular structures, which are predominantly trichomal elaiophores, was examined in relation to the diversification of New World Iridaceae. Phylogenetic analyses based on seven molecular markers obtained from 97 species were conducted to produce the first extensive phylogeny of the New World tribes of subfamily Iridoideae. The resulting phylogenetic hypothesis was used to trace the evolutionary history of glandular structures present in the flowers of numerous species in each tribe. Hypotheses of differential diversification rates among lineages were also investigated using both topological and Binary-State Speciation and Extinction methods. Floral glandular structures and especially trichomal elaiophores evolved multiple times independently in the American tribes of Iridoideae. The distribution pattern of species displaying glandular trichomes across the phylogeny reveals lability in the pollination system and suggests that these structures may have played a significant role in the diversification of the Iridoideae on the American continent.

  15. Phylogenetic affinities of Phobetinus to other pirate spider genera (Araneae: Mimetidae) as indicated by spinning field morphology.

    Science.gov (United States)

    Townley, Mark A; Harms, Danilo; Benjamin, Suresh P

    2013-09-01

    Spinnerets from Phobetinus sagittifer and an undescribed Phobetinus species were examined by scanning electron microscopy to gain a better understanding of this genus' relationships to other genera in the family Mimetidae. Consistent with placement of Phobetinus in Mimetinae, females possessed two synapomorphies of this subfamily; enlarged cylindrical silk gland spigots with domed shafts and a single cylindrical spigot per posterior lateral spinneret (PLS). Spinning field features overall suggest Phobetinus is most closely related to Mimetus, followed by Australomimetus, then Ero. A possible synapomorphy of a clade including Mimetus and Phobetinus is a pair of modified piriform silk gland spigots on each anterior lateral spinneret of adult males located adjacent to the secondary major ampullate silk gland tartipore. These spigots were present in P. sagittifer; however, similarly positioned spigots in the undescribed species were not obviously modified (i.e., wider or with larger openings relative to the other piriform spigots). Close affinity to Mimetus was also indicated by tartipore-accommodated PLS aciniform silk glands in both Phobetinus species. These have been consistently observed in Mimetus, but not in Australomimetus or Ero. Somatic and genitalic drawings of P. sagittifer are provided to aid identification and similarities are noted between male pedipalps of Mimetus and Phobetinus. Copyright © 2013 Elsevier Ltd. All rights reserved.

  16. Evolution of bidirectional sex change and gonochorism in fishes of the gobiid genera Trimma, Priolepis, and Trimmatom

    Science.gov (United States)

    Sunobe, Tomoki; Sado, Tetsuya; Hagiwara, Kiyoshi; Manabe, Hisaya; Suzuki, Toshiyuki; Kobayashi, Yasuhisa; Sakurai, Makoto; Dewa, Shin-ichi; Matsuoka, Midori; Shinomiya, Akihiko; Fukuda, Kazuya; Miya, Masaki

    2017-04-01

    Size-advantage and low-density models have been used to explain how mating systems favor hermaphroditism or gonochorism. However, these models do not indicate historical transitions in sexuality. Here, we investigate the evolution of bidirectional sex change and gonochorism by phylogenetic analysis using the mitochondrial gene of the gobiids Trimma (31 species), Priolepis (eight species), and Trimmatom (two species). Trimma and Priolepis formed a clade within the sister group Trimmatom. Gonadal histology and rearing experiments revealed that Trimma marinae, Trimma nasa, and Trimmatom spp. were gonochoric, whereas all other Trimma and Priolepis spp. were bidirectional sex changers or inferred ones. A maximum-likelihood reconstruction analysis demonstrated that the common ancestor of the three genera was gonochoristic. Bidirectional sex change probably evolved from gonochorism in a common ancestor of Trimma and Priolepis. As the gonads of bidirectional sex changers simultaneously contain mature ovarian and immature testicular components or vice versa, individuals are always potentially capable of functioning as females or males, respectively. Monogamy under low-density conditions may have been the ecological condition for the evolution of bidirectional sex change in a common ancestor. As T. marinae and T. nasa are a monophyletic group, gonochorism should have evolved from bidirectional sex change in a common ancestor.

  17. Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera

    Science.gov (United States)

    2012-01-01

    Background Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis). Results One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an unprecedented sampling of 200 microhylid taxa representing 91% of currently recognized subfamilies and 95% of New World genera. Our analyses do not fully resolve relationships among subfamilies supporting previous studies that have suggested a rapid early diversification of this clade. We observed a close relationship between Synapturanus and Otophryne of the subfamily Otophryninae. Within the subfamily Gastrophryninae relationships between genera were well resolved. Conclusion Otophryninae is distantly related to all other New World microhylids that were recovered as a monophyletic group, Gastrophryninae. Within Gastrophryninae, five genera were recovered as non-monophyletic; we propose taxonomic re-arrangements to render all genera monophyletic. This hypothesis of relationships and updated classification for New World microhylids may serve as a guide to better understand the evolutionary history of this group that is apparently subject to convergent morphological evolution and chromosome reduction. Based on a divergence analysis calibrated with hypotheses from previous studies and fossil data, it appears that microhylid genera inhabiting the New World originated during a period of gradual cooling from the late Oligocene to mid Miocene. PMID:23228209

  18. Molecular phylogeny of microhylid frogs (Anura: Microhylidae with emphasis on relationships among New World genera

    Directory of Open Access Journals (Sweden)

    de Sá Rafael O

    2012-12-01

    Full Text Available Abstract Background Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis. Results One mitochondrial and three nuclear genes (about 2.8 kb were sequenced to assess phylogenetic relationships. We utilized an unprecedented sampling of 200 microhylid taxa representing 91% of currently recognized subfamilies and 95% of New World genera. Our analyses do not fully resolve relationships among subfamilies supporting previous studies that have suggested a rapid early diversification of this clade. We observed a close relationship between Synapturanus and Otophryne of the subfamily Otophryninae. Within the subfamily Gastrophryninae relationships between genera were well resolved. Conclusion Otophryninae is distantly related to all other New World microhylids that were recovered as a monophyletic group, Gastrophryninae. Within Gastrophryninae, five genera were recovered as non-monophyletic; we propose taxonomic re-arrangements to render all genera monophyletic. This hypothesis of relationships and updated classification for New World microhylids may serve as a guide to better understand the evolutionary history of this group that is apparently subject to convergent morphological evolution and chromosome reduction. Based on a divergence analysis calibrated with hypotheses from previous studies and fossil data, it appears that microhylid genera inhabiting the New World originated during a period of gradual cooling from the late Oligocene to

  19. Molecular phylogeny of microhylid frogs (Anura: Microhylidae) with emphasis on relationships among New World genera.

    Science.gov (United States)

    de Sá, Rafael O; Streicher, Jeffrey W; Sekonyela, Relebohile; Forlani, Mauricio C; Loader, Simon P; Greenbaum, Eli; Richards, Stephen; Haddad, Célio F B

    2012-12-10

    Over the last ten years we have seen great efforts focused on revising amphibian systematics. Phylogenetic reconstructions derived from DNA sequence data have played a central role in these revisionary studies but have typically under-sampled the diverse frog family Microhylidae. Here, we present a detailed phylogenetic study focused on expanding previous hypotheses of relationships within this cosmopolitan family. Specifically, we placed an emphasis on assessing relationships among New World genera and those taxa with uncertain phylogenetic affinities (i.e., incertae sedis). One mitochondrial and three nuclear genes (about 2.8 kb) were sequenced to assess phylogenetic relationships. We utilized an unprecedented sampling of 200 microhylid taxa representing 91% of currently recognized subfamilies and 95% of New World genera. Our analyses do not fully resolve relationships among subfamilies supporting previous studies that have suggested a rapid early diversification of this clade. We observed a close relationship between Synapturanus and Otophryne of the subfamily Otophryninae. Within the subfamily Gastrophryninae relationships between genera were well resolved. Otophryninae is distantly related to all other New World microhylids that were recovered as a monophyletic group, Gastrophryninae. Within Gastrophryninae, five genera were recovered as non-monophyletic; we propose taxonomic re-arrangements to render all genera monophyletic. This hypothesis of relationships and updated classification for New World microhylids may serve as a guide to better understand the evolutionary history of this group that is apparently subject to convergent morphological evolution and chromosome reduction. Based on a divergence analysis calibrated with hypotheses from previous studies and fossil data, it appears that microhylid genera inhabiting the New World originated during a period of gradual cooling from the late Oligocene to mid Miocene.

  20. Os gêneros Fasciolaria Lamarck, 1799 e Leucozonia Gray, 1847 no nordeste brasileiro (Mollusca: Gastropoda: Fasciolariidae The genera Fasciolaria Lamarck, 1799 and Leucozonia Gray, 1847 in the northeastern Brazil (Mollusca: Gastropoda: Fasciolariidae

    Directory of Open Access Journals (Sweden)

    Helena Matthews-Cascon

    1989-01-01

    Full Text Available The genera Fasciolaria Lamarck, 1799 and Leucozonia Gray, 1847 are represented in Northeastern Brazil by three species. Fasciolaria aurantiaca Lamarck, 1816; Leucozonia ocellata (Gmelin, 1791 and Leucozonia nassa (Gmelin, 1791. The three species are described and illustrated. An identification key for all the above mentioned taxa is included, together with some ecological data. The anatomy and radula of Fasciolaria aurantiaca and Leucozonia nassa are described and illustrated. Polimorfism in Fasciolaria aurantiaca and Leucozonia nassa is discussed.

  1. Diversidade de espécies dos gêneros de Crematogaster, Gnamptogenys e Pachycondyla (Hymenoptera: Formicidae e complementaridade dos métodos de coleta durante a estação seca numa estação ecológica no estado do Pará, Brasil Diversity of species of the genera Crematogaster,Gnamptogenys and Pachycondyla, (Hymenoptera: Formicidae and complementarity of sampling methods during the dry season in an ecological station in the Brazilian state of Pará

    Directory of Open Access Journals (Sweden)

    Jorge Luiz Pereira Souza

    2007-01-01

    elaboration of alternative protocols, we analyzed the complementarity of two sampling methods in the detection of species richness. In 6 plots of 1 km² distributed in an area of 33,000 ha of continuous primary forest, in the Brazilian state of Pará, the diversity and the frequency of species of genera Crematogaster,Gnamptogenys and Pachycondyla were investigated, as part of the "Ant methodology Protocol" of the Project TEAM. Using the Winkler extractor and pitfall traps, 10 sub-samples were collected per transect. In each plot, 4 transects of 100 m were installed. We registered 36 species, and 15 are new records for the state, and 29 for the study site. Seventeen species were common to both sampling methods, 11 were captured with pitfall and 8 with Winkler. The proportions of singletons were high for both methods (>0,4. Nineteen species were captured by only one method and three were represented by only one individual in both methods. Ordination analysis (SSH, Semi-Strong Hybrid Multi-Dimensional Scaling indicated differences in community structure between both sampling methods. There was a complementarity's effect between these two methods in order to obtain a more complete inventory of the species richness, indicating that both must be used in the protocol. Other resources like rarefaction and/or sample dilution must be evaluated in future investigations.

  2. An illustrated key to nymphs of Perlidae (Insecta, Plecoptera genera in Central Amazonia, Brazil

    Directory of Open Access Journals (Sweden)

    Hamada Neusa

    2003-01-01

    Full Text Available An illustrated key to nymphs of Perlidae collected in streams of Central Amazonia, Brazil is provided. Three genera are reported for this region: Macrogynoplax Enderlein, Anacroneuria Klapálek and Enderleina Jewett. Additional diagnostic characters are provided for Enderleina nymphs.

  3. A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera.

    Science.gov (United States)

    Park, Jeong-Mi; Manen, Jean-François; Colwell, Alison E; Schneeweiss, Gerald M

    2008-07-01

    The phylogenetic relationships of the non-photosynthetic Orobanche sensu lato (Orobanchaceae), which includes some of the economically most important parasitic weeds, remain insufficiently understood and controversial. This concerns both the phylogenetic relationships within the genus, in particular its monophyly or lack thereof, and the relationships to other holoparasitic genera such as Cistanche or Conopholis. Here we present the first comprehensive phylogenetic study of this group based on a region from the plastid genome (rps2 gene). Although substitution rates appear to be elevated compared to the photosynthetic members of Orobanchaceae, relationships among the major lineages Cistanche, Conopholis plus Epifagus, Boschniakia rossica (Cham. & Schltdl.) B. Fedtsch., B. himalaica Hook. f. & Thomson, B. hookeri Walp. plus B. strobilacea A. Gray, and Orobanche s. l. remain unresolved. Resolution within Orobanche, however, is much better. In agreement with morphological, cytological and other molecular phylogenetic evidence, five lineages, corresponding to the four traditionally recognised sections (Gymnocaulis, Myzorrhiza, Orobanche, Trionychon) and O. latisquama Reut. ex Boiss. (of sect. Orobanche), can be distinguished. A combined analysis of plastid rps2 and nuclear ITS sequences of the holoparasitic genera results in more resolved and better supported trees, although the relationships among Orobanche s. l., Cistanche, and the clade including the remaining genera is unresolved. Therefore, rps2 is a marker from the plastid genome that is well-suited to be used in combination with other already established nuclear markers for resolving generic relationships of Orobanche and related genera.

  4. Biogeography of the Malagasy Celastraceae: Multiple independent origins followed by widespread dispersal of genera from Madagascar.

    Science.gov (United States)

    Bacon, Christine D; Simmons, Mark P; Archer, Robert H; Zhao, Liang-Cheng; Andriantiana, Jacky

    2016-01-01

    Of the 97 currently recognized genera of Celastraceae, 19 are native to Madagascar, including six endemics. In this study we conducted the most thorough phylogenetic analysis of Celastraceae yet completed with respect to both character and taxon sampling, and include representatives of five new endemic genera. Fifty-one new accessions, together with 328 previously used accessions of Celastrales, were sampled for morphological characters, two rDNA gene regions, and two plastid gene regions. The endemic Malagasy genera are resolved in two separate lineages-Xenodrys by itself and all other endemic genera in a clade that also includes four lineages inferred to have dispersed from Madagascar: Brexia madagascariensis (Mascarene Islands, coastal Africa), Elaeodendron (West Indies, Africa to New Caledonia), and Pleurostylia (Africa to New Caledonia). Of the 12 extant Malagasy Celastraceae lineages identified, eight are clearly of African origin. The origins of the remaining four lineages are less clear, but reasonable possibilities include America, Eurasia, Africa, southern India, Malesia, and Australia. Based on 95% credible age intervals from fossil-calibrated molecular dating, all 12 extant Malagasy Celastraceae lineages appear to have arisen following dispersal after the separation of Madagascar from other landmasses within the last 70 million years. Copyright © 2015 Elsevier Inc. All rights reserved.

  5. A plastid gene phylogeny of the non-photosynthetic parasitic Orobanche (Orobanchaceae) and related genera

    Science.gov (United States)

    Park, J.-M.; Manen, J.-F.; Colwell, A.E.; Schneeweiss, G.M.

    2008-01-01

    The phylogenetic relationships of the non-photosynthetic Orobanche sensu lato (Orobanchaceae), which includes some of the economically most important parasitic weeds, remain insufficiently understood and controversial. This concerns both the phylogenetic relationships within the genus, in particular its monophyly or lack thereof, and the relationships to other holoparasitic genera such as Cistanche or Conopholis. Here we present the first comprehensive phylogenetic study of this group based on a region from the plastid genome (rps2 gene). Although substitution rates appear to be elevated compared to the photosynthetic members of Orobanchaceae, relationships among the major lineages Cistanche, Conopholis plus Epifagus, Boschniakia rossica (Cham. & Schltdl.) B. Fedtsch., B. himalaica Hook. f. & Thomson, B. hookeri Walp. plus B. strobilacea A. Gray, and Orobanche s. l. remain unresolved. Resolution within Orobanche, however, is much better. In agreement with morphological, cytological and other molecular phylogenetic evidence, five lineages, corresponding to the four traditionally recognised sections (Gymnocaulis, Myzorrhiza, Orobanche, Trionychon) and O. latisquama Reut. ex Boiss. (of sect. Orobanche), can be distinguished. A combined analysis of plastid rps2 and nuclear ITS sequences of the holoparasitic genera results in more resolved and better supported trees, although the relationships among Orobanche s. l., Cistanche, and the clade including the remaining genera is unresolved. Therefore, rps2 is a marker from the plastid genome that is well-suited to be used in combination with other already established nuclear markers for resolving generic relationships of Orobanche and related genera. ?? 2008 The Botanical Society of Japan and Springer.

  6. Taxonomic revision and cladistic analysis of Avicularia Lamarck, 1818 (Araneae, Theraphosidae, Aviculariinae with description of three new aviculariine genera01

    Directory of Open Access Journals (Sweden)

    Caroline Sayuri Fukushima

    2017-03-01

    Full Text Available The genus Avicularia Lamarck, 1818 is revised and all species are rediagnosed. The type species, described as Aranea avicularia Linnaeus, 1758, is the oldest mygalomorph species described and its taxonomic history is extensive and confusing. Cladistic analyses using both equal and implied weights were carried out with a matrix of 46 taxa from seven theraphosid subfamilies, and 71 morphological and ecological characters. The optimal cladogram found with Piwe and concavity = 6 suggests Avicularia and Aviculariinae are monophyletic. Subfamily Aviculariinae includes Avicularia Lamarck, 1818, Typhochlaena C. L. Koch, 1850, Tapinauchenius Ausserer, 1871, Stromatopelma Karsch, 1881, Ephebopus Simon, 1892, Psalmopoeus Pocock, 1895, Heteroscodra Pocock, 1899, Iridopelma Pocock, 1901, Pachistopelma Pocock, 1901, Ybyrapora gen. n., Caribena gen. n., and Antillena gen. n. The clade is supported by well-developed scopulae on tarsi and metatarsi, greatly extended laterally. Avicularia synapomorphies are juveniles bearing black tarsi contrasting with other lighter articles; spermathecae with an accentuated outwards curvature medially, and male palpal bulb with embolus medial portion and tegulum’s margin form an acute angle in retrolateral view. Avicularia is composed of twelve species, including three new species: Avicularia avicularia (Linnaeus, 1818, Avicularia glauca Simon, 1891, Avicularia variegata (F. O. Pickard-Cambridge, 1896 stat. n., A. minatrix Pocock, 1903, Avicularia taunayi (Mello-Leitão, 1920, Avicularia juruensis Mello-Leitão, 1923, Avicularia rufa Schiapelli & Gerschman, 1945, Avicularia purpurea Kirk, 1990, A. hirschii Bullmer et al. 2006, Avicularia merianae sp. n., A. lynnae sp. n., and A. caei sp. n.. Avicularia species are distributed throughout Mexico, Costa Rica, Panama, Trinidad and Tobago, Venezuela, Guyana, Suriname, French Guiana, Colombia, Ecuador, Peru, Bolivia, and Brazil. Three new genera are erected to accommodate former

  7. Taxonomic revision and cladistic analysis of Avicularia Lamarck, 1818 (Araneae, Theraphosidae, Aviculariinae) with description of three new aviculariine genera.

    Science.gov (United States)

    Fukushima, Caroline Sayuri; Bertani, Rogério

    2017-01-01

    The genus Avicularia Lamarck, 1818 is revised and all species are rediagnosed. The type species, described as Aranea avicularia Linnaeus, 1758, is the oldest mygalomorph species described and its taxonomic history is extensive and confusing. Cladistic analyses using both equal and implied weights were carried out with a matrix of 46 taxa from seven theraphosid subfamilies, and 71 morphological and ecological characters. The optimal cladogram found with Piwe and concavity = 6 suggests Avicularia and Aviculariinae are monophyletic. Subfamily Aviculariinae includes Avicularia Lamarck, 1818, Typhochlaena C. L. Koch, 1850, Tapinauchenius Ausserer, 1871, Stromatopelma Karsch, 1881, Ephebopus Simon, 1892, Psalmopoeus Pocock, 1895, Heteroscodra Pocock, 1899, Iridopelma Pocock, 1901, Pachistopelma Pocock, 1901, Ybyrapora gen. n. , Caribena gen. n. , and Antillena gen. n. The clade is supported by well-developed scopulae on tarsi and metatarsi, greatly extended laterally. Avicularia synapomorphies are juveniles bearing black tarsi contrasting with other lighter articles; spermathecae with an accentuated outwards curvature medially, and male palpal bulb with embolus medial portion and tegulum's margin form an acute angle in retrolateral view. Avicularia is composed of twelve species, including three new species: Avicularia avicularia (Linnaeus, 1818), Avicularia glauca Simon, 1891, Avicularia variegata (F. O. Pickard-Cambridge, 1896) stat. n., Avicularia minatrix Pocock, 1903, Avicularia taunayi (Mello-Leitão, 1920), Avicularia juruensis Mello-Leitão, 1923, Avicularia rufa Schiapelli & Gerschman, 1945, Avicularia purpurea Kirk, 1990, Avicularia hirschii Bullmer et al. 2006, Avicularia merianae sp. n. , Avicularia lynnae sp. n. , and Avicularia caei sp. n. . Avicularia species are distributed throughout Mexico, Costa Rica, Panama, Trinidad and Tobago, Venezuela, Guyana, Suriname, French Guiana, Colombia, Ecuador, Peru, Bolivia, and Brazil. Three new genera are erected to

  8. Checklist of invasive alien species in CSIR-NBRI Botanic Garden, Lucknow, India

    Directory of Open Access Journals (Sweden)

    Shilpi Singh

    2015-08-01

    Full Text Available The invasive alien species of CSIR-NBRI Botanic Garden are enumerated and their impact on the surrounding ecosystem are discussed. This study deals with the information on habit, nativity and family of plant species occurring in the area of study. A total of 103 invasive alien species under 86 genera and 36 families were recorded. Among these, the eudicotyledons represent 85 species, 69 genera and 32 families; monocotyledons represent 18 species, 17 genera and 4 families. In terms of nativity, species from Tropical America are the most dominant group with 34 species. In addition, based on life forms, herbs are dominant (88 species, followed by shrubs (8 species, climbers (4 species and trees (3 species.

  9. GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana.

    Science.gov (United States)

    Engel, Julien; Brousseau, Louise; Baraloto, Christopher

    2016-01-01

    The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification. Here, we introduce an original multi-access electronic key for the identification of 389 tree genera occurring in French Guiana terra-firme forests, based on a set of 79 morphological characters related to vegetative, floral and fruit characters. Its purpose is to help Amazonian tree identification and to support the dissemination of botanical knowledge to non-specialists, including forest workers, students and researchers from other scientific disciplines. The electronic key is accessible with the free access software Xper ², and the database is publicly available on figshare: https://figshare.com/s/75d890b7d707e0ffc9bf (doi: 10.6084/m9.figshare.2682550).

  10. Anodic biofilms in microbial fuel cells harbor low numbers of higher-power-producing bacteria than abundant genera

    Energy Technology Data Exchange (ETDEWEB)

    Kiely, Patrick D.; Call, Douglas F.; Yates, Matthew D.; Regan, John M.; Logan, Bruce E. [Pennsylvania State Univ., University Park, PA (United States). Dept. of Civil and Environmental Engineering

    2010-09-15

    Microbial fuel cell (MFC) anode communities often reveal just a few genera, but it is not known to what extent less abundant bacteria could be important for improving performance. We examined the microbial community in an MFC fed with formic acid for more than 1 year and determined using 16S rRNA gene cloning and fluorescent in situ hybridization that members of the Paracoccus genus comprised most ({proportional_to}30%) of the anode community. A Paracoccus isolate obtained from this biofilm (Paracoccus denitrificans strain PS-1) produced only 5.6 mW/m{sup 2}, whereas the original mixed culture produced up to 10 mW/m{sup 2}. Despite the absence of any Shewanella species in the clone library, we isolated a strain of Shewanella putrefaciens (strain PS-2) from the same biofilm capable of producing a higher-power density (17.4 mW/m{sup 2}) than the mixed culture, although voltage generation was variable. Our results suggest that the numerical abundance of microorganisms in biofilms cannot be assumed a priori to correlate to capacities of these predominant species for high-power production. Detailed screening of bacterial biofilms may therefore be needed to identify important strains capable of high-power generation for specific substrates. (orig.)

  11. Anodic biofilms in microbial fuel cells harbor low numbers of higher-power-producing bacteria than abundant genera

    KAUST Repository

    Kiely, Patrick D.; Call, Douglas F.; Yates, Matthew D.; Regan, John M.; Logan, Bruce E.

    2010-01-01

    Microbial fuel cell (MFC) anode communities often reveal just a few genera, but it is not known to what extent less abundant bacteria could be important for improving performance. We examined the microbial community in an MFC fed with formic acid for more than 1 year and determined using 16S rRNA gene cloning and fluorescent in situ hybridization that members of the Paracoccus genus comprised most (~30%) of the anode community. A Paracoccus isolate obtained from this biofilm (Paracoccus denitrificans strain PS-1) produced only 5.6 mW/m 2, whereas the original mixed culture produced up to 10 mW/m 2. Despite the absence of any Shewanella species in the clone library, we isolated a strain of Shewanella putrefaciens (strain PS-2) from the same biofilm capable of producing a higher-power density (17.4 mW/m2) than the mixed culture, although voltage generation was variable. Our results suggest that the numerical abundance of microorganisms in biofilms cannot be assumed a priori to correlate to capacities of these predominant species for high-power production. Detailed screening of bacterial biofilms may therefore be needed to identify important strains capable of high-power generation for specific substrates. © 2010 Springer-Verlag.

  12. Anodic biofilms in microbial fuel cells harbor low numbers of higher-power-producing bacteria than abundant genera

    KAUST Repository

    Kiely, Patrick D.

    2010-07-15

    Microbial fuel cell (MFC) anode communities often reveal just a few genera, but it is not known to what extent less abundant bacteria could be important for improving performance. We examined the microbial community in an MFC fed with formic acid for more than 1 year and determined using 16S rRNA gene cloning and fluorescent in situ hybridization that members of the Paracoccus genus comprised most (~30%) of the anode community. A Paracoccus isolate obtained from this biofilm (Paracoccus denitrificans strain PS-1) produced only 5.6 mW/m 2, whereas the original mixed culture produced up to 10 mW/m 2. Despite the absence of any Shewanella species in the clone library, we isolated a strain of Shewanella putrefaciens (strain PS-2) from the same biofilm capable of producing a higher-power density (17.4 mW/m2) than the mixed culture, although voltage generation was variable. Our results suggest that the numerical abundance of microorganisms in biofilms cannot be assumed a priori to correlate to capacities of these predominant species for high-power production. Detailed screening of bacterial biofilms may therefore be needed to identify important strains capable of high-power generation for specific substrates. © 2010 Springer-Verlag.

  13. Towards a phylogenetic classification of reef corals: The Indo-Pacific genera Merulina, Goniastrea and Scapophyllia (Scleractinia, Merulinidae)

    KAUST Repository

    Huang, Danwei

    2014-06-03

    Recent advances in scleractinian systematics and taxonomy have been achieved through the integration of molecular and morphological data, as well as rigorous analysis using phylogenetic methods. In this study, we continue in our pursuit of a phylogenetic classification by examining the evolutionary relationships between the closely related reef coral genera Merulina, Goniastrea, Paraclavarina and Scapophyllia (Merulinidae). In particular, we address the extreme polyphyly of Favites and Goniastrea that was discovered a decade ago. We sampled 145 specimens belonging to 16 species from a wide geographic range in the Indo-Pacific, focusing especially on type localities, including the Red Sea, western Indian Ocean and central Pacific. Tree reconstructions based on both nuclear and mitochondrial markers reveal a novel lineage composed of three species previously placed in Favites and Goniastrea. Morphological analyses indicate that this clade, Paragoniastrea Huang, Benzoni & Budd, gen. n., has a unique combination of corallite and subcorallite features observable with scanning electron microscopy and thin sections. Molecular and morphological evidence furthermore indicates that the monotypic genus Paraclavarina is nested within Merulina, and the former is therefore synonymised. © 2014 Royal Swedish Academy of Sciences.

  14. Bioactive Secondary Metabolites from a Thai Collection of Soil and Marine-Derived Fungi of the Genera Neosartorya and Aspergillus.

    Science.gov (United States)

    Zin, War War May; Prompanya, Chadaporn; Buttachon, Suradet; Kijjoa, Anake

    2016-01-01

    Fungi are microorganisms which can produce interesting secondary metabolites with structural diversity. Although terrestrial fungi have been extensively investigated for their bioactive secondary metabolites such as antibiotics, marine-derived fungi have only recently attracted attention of Natural Products chemists. Our group has been working on the secondary metabolites produced by the cultures of the fungi of the genera Neosartorya and Aspergillus, collected from soil and marine environments from the tropical region for the purpose of finding new leads for anticancer and antibacterial drugs. This review covers only the secondary metabolites of four soil and six marine-derived species of Neosarorya as well as a new species of marine-derived Aspergillus, investigated by our group. In total, we have isolated fifty three secondary metabolites which can be categorized as polyketides (two), isocoumarins (six), terpenoids (two), meroterpenes (fourteen), alkaloids (twenty eight) and cyclic peptide (one). The anticancer and antibacterial activities of these fungal metabolites are also discussed. Among fifty three secondary metabolites isolated, only the alkaloid eurochevalierine and the cadinene sesquiterpene, isolated from the soil fungus N. pseudofisheri, showed relevant in vitro cytostatic activity against glioblastoma (U373) and non-small cell lung cancer (A549) cell lines while the meroditerpene aszonapyrone A exhibited strong antibacterial activity against multidrug-resistant Gram-positive bacteria and also strong antibiofilm activity in these isolates.

  15. Role of the Qinghai-Tibetan Plateau uplift in the Northern Hemisphere disjunction: evidence from two herbaceous genera of Rubiaceae.

    Science.gov (United States)

    Deng, Tao; Zhang, Jian-Wen; Meng, Ying; Volis, Sergei; Sun, Hang; Nie, Ze-Long

    2017-10-17

    To assess the role of the Qinghai-Tibetan Plateau uplift in shaping the intercontinental disjunction in Northern Hemisphere, we analyzed the origin and diversification within a geological timeframe for two relict herbaceous genera, Theligonum and Kelloggia (Rubiaceae). Phylogenetic relationships within and between Theligonum and Kelloggia as well as their relatives were inferred using five chloroplast markers with parsimony, Bayesian and maximum-likelihood approaches. Migration routes and evolution of these taxa were reconstructed using Bayesian relaxed molecular clock and ancestral area reconstruction. Our results suggest the monophyly of each Theligonum and Kelloggia. Eastern Asian and North American species of Kelloggia diverged at ca.18.52 Mya and the Mediterranean species of Theligonum diverged from eastern Asian taxa at ca.13.73 Mya. Both Kelloggia and Theligonum are Tethyan flora relicts, and their ancestors might have been occurred in warm tropical to subtropical environments along the Tethys coast. The Qinghai-Tibetan Plateau separated the eastern and western Tethyan area may contribute significantly to the disjunct distributions of Theligonum, and the North Atlantic migration appears to be the most likely pathway of expansion of Kelloggia to North America. Our results highlight the importance role of the QTP uplift together with corresponding geological and climatic events in shaping biodiversity and biogeographic distribution in the Northern Hemisphere.

  16. Review of Marmasoma White with lectotype designation of M. sumptuosum White and an identification key to the Australasian/Oceanian genera of Ecliminae (Diptera, Bombyliidae).

    Science.gov (United States)

    Rodrigues, Paula Fernanda Motta; McAlister, Erica; Lamas, Carlos José Einicker

    2017-02-15

    The bombyliid genus Marmasoma White is restricted to Australia. Marmasoma sumptuosum White, the only known species of the genus, is studied and a lectotype and paralectotypes are designated. Based on the type series and on additional material, a redescription of the species is presented and the main characters of the external morphology of adults are illustrated and photographed, including male and female genitalia. In addition, the remarkable aedeagus of M. sumptuosum, unique among all Ecliminae species by the presence of serrated projections on its apical portion, is described and photographed in detail for the first time. An identification key to the Australasian/Oceanian genera of Ecliminae and a distribution map with the known geographic records of Marmasoma are also included.

  17. 77 FR 26779 - Endangered Species; Receipt of Applications for Permit

    Science.gov (United States)

    2012-05-07

    ... Boidae Genera: Panthera Tragopan Species: snow leopard (Uncia uncia) black-footed cat (Felis nigripes... wildlife registration under 50 CFR 17.21(g) for the following families, genus, and species, to enhance... following families, genus, and species, to enhance their propagation or survival. This notification covers...

  18. Colletotrichum species causing anthracnose disease of chili in China

    NARCIS (Netherlands)

    Diao, Y.-Z.; Zhang, C.; Liu, F.; Wang, W.-Z.; Liu, L.; Cai, L.; Liu, X.-L.

    2017-01-01

    Anthracnose caused by Colletotrichum species is a serious disease of more than 30 plant genera. Several Colletotrichum species have been reported to infect chili in different countries. Although China is the largest chiliproducing country, little is known about the species that have been infecting

  19. A revision of the haploporinae nicoll, 1914 (digenea: haploporidae) from mullets (mugilidae): two new haploporine genera and a key to the genera of the subfamily.

    Science.gov (United States)

    Blasco-Costa, Isabel; Montero, Francisco E; Gibson, David I; Balbuena, Juan Antonio; Kostadinova, Aneta

    2009-03-01

    Two new haploporine genera are established for parasites of mullets. Ragaia n. g. is erected for R. lizae n. sp. from Liza ramado in the Ebro Delta on the Mediterranean Coast of Spain. This new genus is distinguished by the unique combination of the following characters: a strongly muscular ventral sucker which is twice as large as the oral sucker; a large, muscular hermaphroditic sac similar in length to the ventral sucker; a saccular, thick-walled internal seminal vesicle which is larger than the external seminal vesicle; and the ovary and vitellarium located rather close to the posterior extremity. Pseudodicrogaster n. g. is erected to accommodate Dicrogaster japonica Machida, 1996, as P. japonica (Machida, 1996) n. comb., a parasite of Mugil cephalus L. off Fukaura, Japan. This genus is recognised on the basis of: the tubular condition of both the internal and external seminal vesicles, the latter being much shorter than the former; the sucker ratio; the massive pyriform hermaphroditic sac; the location of the testis; and the presence of two eye-spots in developed miracidia. A key to the nine recognised genera of the Haploporinae is presented.

  20. Comments on the gonotyl of Proctocaecum macroclemidis (Tkach and Snyder, 2003) n. comb. (Digenea: Acanthostomidae: Acanthostominae), with a key to the genera of acanthostominae and new phylogenetic tree for Proctocaecum Baugh, 1957.

    Science.gov (United States)

    Brooks, Daniel R

    2004-06-01

    The species recently described as Acanthostomum macroclemidis possesses the gonotyl in the form of a solid muscular pad uniquely diagnostic for species of Proctocaecum and is accordingly transferred to that genus. An artificial key to the 5 acanthostomine genera, as well as an updated phylogenetic hypothesis for the 10 known species of Proctocaecum, based on 11 characters and including 2 species described since the last phylogenetic analysis, are presented. The single most parsimonious phylogenetic tree with a consistency index of 87.5% suggests that Proctocaecum originated in Africa and spread to North America and South America before the breakup of Pangaea. As a result, the 2 North American and 1 South American species are most closely related to different African members of the genus. African and Indo-Pacific species inhabit crocodylids; hence, the occurrence of North American species in alligatorids and chelonians and a South American species in alligatorids are the result of host switches.

  1. Re-introduction and supplementation of species of Acropora and Pocillopora into the lagoons of Lakshadweep Islands, India

    Digital Repository Service at National Institute of Oceanography (India)

    Venkatesh, M.; Koya, S.I.; Wafar, M.V.M.

    The genera Acropora and Pocillopora are represented by a large number of species in most coral reefs They are more sensitive to environmental changes and anthropogenic effects and hence are more at risk than other coral species For example...

  2. The genetic diversity of genus Bacillus and the related genera revealed by 16S rRNA gene sequences and ardra analyses isolated from geothermal regions of turkey

    Directory of Open Access Journals (Sweden)

    Arzu Coleri Cihan

    2012-03-01

    Full Text Available Previously isolated 115 endospore-forming bacilli were basically grouped according to their temperature requirements for growth: the thermophiles (74%, the facultative thermophiles (14% and the mesophiles (12%. These isolates were taken into 16S rRNA gene sequence analyses, and they were clustered among the 7 genera: Anoxybacillus, Aeribacillus, Bacillus, Brevibacillus, Geobacillus, Paenibacillus, and Thermoactinomycetes. Of these bacilli, only the thirty two isolates belonging to genera Bacillus (16, Brevibacillus (13, Paenibacillus (1 and Thermoactinomycetes (2 were selected and presented in this paper. The comparative sequence analyses revealed that the similarity values were ranged as 91.4-100 %, 91.8- 99.2 %, 92.6- 99.8 % and 90.7 - 99.8 % between the isolates and the related type strains from these four genera, respectively. Twenty nine of them were found to be related with the validly published type strains. The most abundant species was B. thermoruber with 9 isolates followed by B. pumilus (6, B. lichenformis (3, B. subtilis (3, B. agri (3, B. smithii (2, T. vulgaris (2 and finally P. barengoltzii (1. In addition, isolates of A391a, B51a and D295 were proposed as novel species as their 16S rRNA gene sequences displayed similarities ≤ 97% to their closely related type strains. The AluI-, HaeIII- and TaqI-ARDRA results were in congruence with the 16S rRNA gene sequence analyses. The ARDRA results allowed us to differentiate these isolates, and their discriminative restriction fragments were able to be determined. Some of their phenotypic characters and their amylase, chitinase and protease production were also studied and biotechnologically valuable enzyme producing isolates were introduced in order to use in further studies.

  3. Revealing the secrets of African annonaceae : systematics, evolution and biogeography of the syncarpous genera Isolona and Monodora

    NARCIS (Netherlands)

    Couvreur, T.L.P.

    2008-01-01

    The goal of this PhD project was to study the evolution, systematics and biogeography of two African genera from the pan-tropical Annonaceae family: Isolona and Monodora. Both genera are unique within the family in that the female reproductive parts (or carpels) are fused into a single unit. All

  4. The genera Boiruna and Clelia (serpentes: pseudoboini in Paraguay and Argentina

    Directory of Open Access Journals (Sweden)

    Norman J. Scott Jr.

    2006-01-01

    Full Text Available Snakes of the pseudoboine genera Clelia, which is probably polyphyletic, and Boiruna are distributed from southern Argentina, southern Brazil, and Uruguay northwards into central México. Six members occur in Paraguay and Argentina: B. maculata, Clelia bicolor, C. clelia, C. plumbea, C. quimi, and C. rustica. Historically, there has been taxonomic confusion among the larger species (B. maculata, C. clelia, C. plumbea, and C. rustica and between the small species (C. bicolor and C. quimi. All of the species except C. rustica have distinct ontogenetic color changes. Species can be distinguished on the bases of size, color, hemipenial spines, and loreal, supralabial, and ventral scale counts. Much of the morphological evolutionary differentiation in Boiruna and Clelia seems to have taken place in the snout region, as evidenced by the differing proportions of the scales of the loreal region. Boiruna maculata has the widest ecological amplitude. It is broadly distributed in most vegetation types north of the 38th parallel in central Argentina, being absent only from the deltaic sediments of Buenos Aires Province, Argentina and the broad valleys and rolling hills of eastern Paraguay. Clelia bicolor is most common in the Paraguay and Paraná river valleys, with a few records from the Andean foothills in northern Argentina. Clelia clelia is distributed along the Río Paraguay and the lower Paraná, and is also found throughout much of eastern Paraguay. Clelia plumbea is apparently parapatric with C. clelia along the Río Paraná in southeastern Paraguay and Misiones Province, Argentina. The ranges of C. quimi to the east and C. bicolor in the west about in this same region without apparent overlap. There are no vouchered records of Clelia rustica from Paraguay. In Argentina, it is a species of temperate climates; north of the 30th parallel, it occurs in the Andean foothills and the wet forests of Misiones Province. Southwards, it is widely distributed

  5. The dipteran family Celyphidae in the New World, with discussion of and key to world genera (Insecta, Diptera

    Directory of Open Access Journals (Sweden)

    Stephen D. Gaimari

    2017-10-01

    Full Text Available The family Celyphidae (Diptera, Lauxanioidea is verified as part of the New World fauna, with a second specimen discovered of a species described from French Guiana in 1844 by P.J.M. Macquart. As this species possesses characteristics that clearly suggest a separate lineage from the Old World celyphids, a new genus is proposed, Atopocelyphus gen. n., with the type species, Celyphus ruficollis Macquart, in the new combination Atopocelyphus ruficollis (Macquart, comb. n. A key to world genera of Celyphidae is presented, along with discussion of generic concepts. Chamaecelyphus Frey is synonymized under Spaniocelyphus Hendel, syn. n., resulting in the following 10 new combinations: Spaniocelyphus africanus (Walker, comb. n.; S. dichrous (Bezzi, comb. n.; S. gutta (Speiser, comb. n.; S. halticinus (Frey, comb. n.; S. kalongensis (Vanschuytbroek, comb. n.; S. ruwenzoriensis (Vanschuytbroek, comb. n.; S. straeleni (Vanschuytbroek, comb. n.; S. upembaensis (Vanschuytbroek, comb. n.; S. violaceus (Vanschuytbroek, comb. n.; S. vrydaghi (Vanschuytbroek, comb. n. The subgenera of Celyphus Dalman are elevated to genus rank, as Paracelyphus Bigot, stat. rev., and Hemiglobus Frey, stat. rev., resulting in the following 17 new and revised combinations: Hemiglobus cheni (Shi, comb. n.; H. eos (Frey, comb. n.; H. lacunosus Frey, comb. rev.; H. pellucidus Frey, comb. rev.; H. planitarsalis (Shi, comb. n.; H. porosus (Tenorio, comb. n.; H. pulchmaculatus (Liu & Yang, comb. n.; H. quadrimaculatus (Tenorio, comb. n.; H. resplendens Frey, comb. rev.; H. rugosus (Tenorio, comb. n.; H. testaceus (Malloch, comb. n.; H. trichoporis (Shi, comb. n.; H. unicolor Frey, comb. rev.; H. violaceus Chen, comb. rev.; Paracelyphus hyacinthus Bigot, comb. rev.; P. medogis (Shi, comb. n.; P. vittalis (Shi, comb. n.

  6. Effect of Conway Medium and f/2 Medium on the growth of six genera of South China Sea marine microalgae.

    Science.gov (United States)

    Lananan, Fathurrahman; Jusoh, Ahmad; Ali, Nora'aini; Lam, Su Shiung; Endut, Azizah

    2013-08-01

    A study was performed to determine the effect of Conway and f/2 media on the growth of microalgae genera. Genera of Chlorella sp., Dunaliella sp., Isochrysis sp., Chaetoceros sp., Pavlova sp. and Tetraselmis sp. were isolated from the South China Sea. During the cultivation period, the density of cells were determined using Syringe Liquid Sampler Particle Measuring System (SLS-PMS) that also generated the population distribution curve based on the size of the cells. The population of the microalgae genera is thought to consist of mother and daughter generations since these microalgae genera reproduce by releasing small non-motile reproductive cells (autospores). It was found that the reproduction of Tetraselmis sp., Dunaliella sp. and Pavlova sp. could be sustained longer in f/2 Medium. Higher cell density was achieved by genus Dunaliella, Chlorella and Isochrysis in Conway Medium. Different genera of microalgae had a preference for different types of cultivation media. Copyright © 2013 Elsevier Ltd. All rights reserved.

  7. A re-evaluation of the genus Myceliophthora (Sordariales, Ascomycota): its segregation into four genera and description of Corynascus fumimontanus sp. nov.

    Science.gov (United States)

    Marin-Felix, Yasmina; Stchigel, Alberto M; Miller, Andrew N; Guarro, Josep; Cano-Lira, José F

    2015-01-01

    Based on a number of isolates of Myceliophthora (Chaetomiaceae, Sordariales, Ascomycota) recently isolated from soil samples collected in USA, the taxonomy of the genus was re-evaluated through phylogenetic analyses of sequences from the nuc rDNA internal transcribed spacer region and genes for the second largest subunit of RNA polymerase II and translation elongation factor 1α. Members of Myceliophthora were split into four monophyletic clades strongly supported by molecular and phenotypic data. Such clades correspond with Myceliophthora, now restricted only to the type species of the genus Corynascus, which is re-established with five species, the new monotypic genus Crassicarpon and also the new genus Thermothelomyces (comprising four species). Myceliophthora lutea is mesophilic and a permanently asexual morph compared to the members of the other three mentioned genera, which also are able to sexually reproduce morphs with experimentally proven links to their asexual morphs. The asexual morph of M. lutea is characterized by broadly ellipsoidal, smooth-walled conidia with a wide, truncate base. Crassicarpon thermophilum is thermophilic and heterothallic and produces spherical to cuneiform, smooth-walled conidia and cleistothecial ascomata of smooth-walled, angular cells and ascospores with a germ pore at each end. Corynascus spp. are homothallic and mesophilic and produce spherical, mostly ornamented conidia and cleistothecial ascomata with textura epidermoidea composed of ornamented wall cells, and ascospores with one germ pore at each end. Thermothelomyces spp. are thermophilic, heterothallic and characterized by similar ascomata and conidia as Corynascus spp., but its ascospores exhibit only a single germ pore. A dichotomous key to distinguish Myceliophthora from the other mentioned genera are provided, as well as dichotomous keys to identify the species of Corynascus and Thermothelomyces. A new species, namely Corynascus fumimontanus, characterized by

  8. Palynological study of the genera Ruellia, Ecbolium, Asystasia, Blepharis and Dicliptera (Acanthaceae) of Yemen

    Science.gov (United States)

    Al-Hakimi, S. Anisa; Maideen, Haja; Latiff, A.

    2013-11-01

    Pollen morphology of five genera of the family Acanthaceae, namely Ruellia, Blepharis, Asystasia, Ecbolium and Dicliptera (Acanthaceae) of Yemen has been examined using light and scanning electron microscope. Pollen descriptions were provided with two shapes distinguished, spheroidal and prolate. Most of the pollen grains were tricolporate amd psuedocolpi except those of Blepharis which are colpate. The surface is coarsely reticulate, in addition to the lumina that varies in size.

  9. Palynological study of the genera Ruellia, Ecbolium, Asystasia, Blepharis and Dicliptera (Acanthaceae) of Yemen

    Energy Technology Data Exchange (ETDEWEB)

    Al-Hakimi, S. Anisa [School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor, Malaysia and Biology Department, Faculty of Science, Taiz University, Taiz (Yemen); Maideen, Haja; Latiff, A. [School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor (Malaysia)

    2013-11-27

    Pollen morphology of five genera of the family Acanthaceae, namely Ruellia, Blepharis, Asystasia, Ecbolium and Dicliptera (Acanthaceae) of Yemen has been examined using light and scanning electron microscope. Pollen descriptions were provided with two shapes distinguished, spheroidal and prolate. Most of the pollen grains were tricolporate amd psuedocolpi except those of Blepharis which are colpate. The surface is coarsely reticulate, in addition to the lumina that varies in size.

  10. Studies on bioaccumulation of 152Eu, 137Cs, 60Co by different algal genera

    International Nuclear Information System (INIS)

    Saha, A.K.; Chakraborty, N.; Pal, R.; Nayak, Dalia; Lahiri, Susanta

    2006-01-01

    In the present paper, the bioaccumulation of a mixture of potentially hazardous, long lived radionuclides 152 Eu, 137 Cs and 60 Co by five algal genera of three different family, viz.: Lyngbya and Phormidium from cyanophyceae; Phizoclonium and Chaetomorpha from chlorophyceae and Catenella from rhodophyceae have been studied. Because of the long half life and high solubility, these radionuclides are considered the most hazardous in the nuclear spent fuel

  11. Pyrrhopyginae: gêneros novos e revalidados (Lepidoptera, Hesperiidae Pyrrhopyginae: new and revalidated genera (Lepidoptera, Hespe-riidae

    Directory of Open Access Journals (Sweden)

    Olaf H.H. Mielke

    2002-03-01

    Full Text Available The following new genera with their type-species are described: Oxynetrini: Cyclopyge gen. n. - type-species: Pyrrhopyge roscius Hopffer, 1874; Pyrrhopygini: Arnysoria gen. n. - type species: Pyrrhopyga [sic] galgala Hewitson, 1866, Chalypyge gen. n. - type species: Pyrrhopyga [sic] chalybea Scudder, 1872, Creonpyge gen. n. - type species: Pyrrhopyga [sic] creon H. Druce, 1874, Cyanopyge gen. n. - type species: Pyrrhopyge sangaris Skinner, 1921, Gunayan gen. n. - type species: Pyrrhopyga [sic] rhacia Hewitson, 1875, Jonaspyge gen. n. - type species: Pyrrhopyga [sic] Jonas C. Felder & R. Felder, 1859, Melanopyge gen. n. - type species: Pyrrhopyga [sic] maculosa Hewitson, 1866, Mimardaris gen. n. - type species: Pyrrhopyga [sic] sela Hewitson, 1866, Mysarbia gen. n. - type species: Pyrrhopyge sejanus Hopffer, 1874, Ochropyge gen. n. - type species: Pyrrhopyge ruficauda Hayward, 1932. Apyrrothrix Lindsey, 1921 and Yanguna Watson, 1893 are revalidated. The following are revalidated combinations: Apyrrothrix araxes (Hewitson, 1867, Apyrrothrix arizonae (Godman & Salvin, 1893, Yanguna cometes cometes (Cramer, 1770, Yanguna cometes cometides Mabille & Boullet, 1908, Yanguna cometes staudingeri (Plštz, 1879, Yanguna cosyra (H. Druce, 1875, Yanguna spatlosa spatlosa (Hewitson, 1871, Yanguna spatlosa aspllos Mabille & Boullet, 1908, Yanguna spatlosa mabillei H.H. Druce, 1909, Yanguna tetricus Bell, 1931, Yanguna thelersa (Hewitson, 1866, The following are new combinations: Cyclopyge roscius roscius (Hopffer, 1874, Cyclopyge roscius flavomaculata (Bell, 1937, Cyclopyge roscius iphimedia (Plštz, 1886, Yanguna erebus (Plštz, 1879, Gunayan rhacia (Hewitson, 1875, Gunayan rubrlcollts (Sepp, [1841], Gunayan timaeus (Bell, 1931, Chalypyge chalybea chalybea (Scudder, 1872, Chalypyge chalybea chlorts (Evans, 1951, Chalypyge zereda zereda (Hewitson, 1866, Chalypyge zereda hygieia (C. Felder & R. Felder, 1867, Chalypyge zereda insana (Staudinger, 1876, Chalypyge

  12. Prevalence and differential host-specificity of two avian blood parasite genera in the Australo-Papuan region

    Science.gov (United States)

    Beadell, J.S.; Gering, E.; Austin, J.; Dumbacher, J.P.; Peirce, M.A.; Pratt, T.K.; Atkinson, C.T.; Fleischer, R.C.

    2004-01-01

    The degree to which widespread avian blood parasites in the genera Plasmodium and Haemoproteus pose a threat to novel hosts depends in part on the degree to which they are constrained to a particular host or host family. We examined the host distribution and host-specificity of these parasites in birds from two relatively understudied and isolated locations: Australia and Papua New Guinea. Using polymerase chain reaction (PCR), we detected infection in 69 of 105 species, representing 44% of individuals surveyed (n = 428). Across host families, prevalence of Haemoproteus ranged from 13% (Acanthizidae) to 56% (Petroicidae) while prevalence of Plasmodium ranged from 3% (Petroicidae) to 47% (Ptilonorhynchidae). We recovered 78 unique mitochondrial lineages from 155 sequences. Related lineages of Haemoproteus were more likely to derive from the same host family than predicted by chance at shallow (average LogDet genetic distance = 0, n = 12, P = 0.001) and greater depths (average distance = 0.014, n = 11, P parasite phylogeny. Within two major Haemoproteus subclades identified in a maximum likelihood phylogeny, host-specificity was evident up to parasite genetic distances of 0.029 and 0.007 based on logistic regression. We found no significant host relationship among lineages of Plasmodium by any method of analysis. These results support previous evidence of strong host-family specificity in Haemoproteus and suggest that lineages of Plasmodium are more likely to form evolutionarily-stable associations with novel hosts.

  13. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses.

    Science.gov (United States)

    Takeuchi, M; Hamana, K; Hiraishi, A

    2001-07-01

    Phylogenetic analyses of 16S rRNA gene sequences by distance matrix and parsimony methods indicated that the currently known species of the genus Sphingomonas can be divided into four clusters. Some chemotaxonomic and phenotypic differences were noted among these clusters. Three new genera, Sphingobium, Novosphingobium and Sphingopyxis, are proposed in addition to the genus Sphingomonas sensu stricto. The genus Sphingobium is proposed to accommodate Sphingomonas chlorophenolica, Sphingomonas herbicidovorans and Sphingomonas yanoikuyae. The genus Novosphingobium is proposed for Sphingomonas aromaticivorans, Sphingomonas capsulata, Sphingomonas rosa, Sphingomonas stygia, Sphingomonas subarctica and Sphingomonas subterranea. Sphingomonas macrogoltabidus and Sphingomonas terrae are reclassified in the genus Sphingopyxis. The type species of Sphingobium, Novosphingobium and Sphingopyxis are Sphingobium yanoikuyae, Novosphingobium capsulatum and Sphingopyxis macrogoltabida, respectively.

  14. Antimicrobial activity of selected plant species of Genera arbutus l., Bruckenthalia rchb., Calluna salisb. and Erica l. (Ericaceae

    Directory of Open Access Journals (Sweden)

    Pavlović Dragana

    2014-03-01

    Full Text Available Najpoznatiji i najviše korišćeni biljni uroantiseptik je list uve, Uvaeursi folium (Arctostaphylos uva ursi, Ericaceae. U tradicionalnoj medicini često se i druge vrste familije Ericaceae spominju u lečenju urinarnih infekcija. Provera antimikrobne aktivnosti izvršena je za sledeće biljne vrste ove familije koje samostalno rastu u flori Balkanskog poluostrva: Arbutus unedo, Bruckentalia spiculifolia, Calluna vulgaris, Erica arborea i Erica carnea.

  15. Two genera and nineteen species of fruit-feeding erebid moths (Lepidoptera: Erebidae) recorded in Cameroon for the first time

    Czech Academy of Sciences Publication Activity Database

    Maicher, Vincent; Sáfián, S.; Ishmeal, K. N.; Murkwe, M.; Kimbeng, T. J.; Janeček, Štěpán; Tropek, Robert

    2016-01-01

    Roč. 126, č. 1 (2016), s. 64-70 ISSN 0013-872X R&D Projects: GA ČR GB14-36098G Grant - others:GA JU(CZ) 156/2013/P; GA JU(CZ) 030/2016/P Institutional support: RVO:60077344 ; RVO:67985939 Keywords : Erebinae * Calpinae * Hypeninae Subject RIV: EG - Zoology; EH - Ecology, Behaviour (BU-J) Impact factor: 0.226, year: 2016 http://www.bioone.org/doi/abs/10.3157/021.126.0108

  16. Chewing lice (Phthiraptera) from wild birds in Senegal, with descriptions of three new species of the genera Brueelia and Philopteroides

    Czech Academy of Sciences Publication Activity Database

    Najer, T.; Sychra, O.; Literák, I.; Procházka, Petr; Čapek, Miroslav; Koubek, Petr

    2012-01-01

    Roč. 57, č. 1 (2012), s. 90-98 ISSN 1230-2821 R&D Projects: GA AV ČR IAA6093404; GA AV ČR IAA601690901; GA MŠk LC06073 Institutional research plan: CEZ:AV0Z60930519 Keywords : Rallicola * Emersoniella * Rallicola centropus * Sunbird * Coucal * new host records Subject RIV: EG - Zoology Impact factor: 1.000, year: 2012

  17. Review of the cyanobacterial genera implaying planktic species after recent taxonomic revisions according to polyphasic methods: state as of 2014.

    Czech Academy of Sciences Publication Activity Database

    Komárek, Jiří

    2016-01-01

    Roč. 764, č. 1 (2016), s. 259-270 ISSN 0018-8158 Institutional support: RVO:67985939 Keywords : cyanobacteria * plankton * taxonomic revisions Subject RIV: EH - Ecology, Behaviour Impact factor: 2.056, year: 2016

  18. The nature of plant species.

    Science.gov (United States)

    Rieseberg, Loren H; Wood, Troy E; Baack, Eric J

    2006-03-23

    Many botanists doubt the existence of plant species, viewing them as arbitrary constructs of the human mind, as opposed to discrete, objective entities that represent reproductively independent lineages or 'units of evolution'. However, the discreteness of plant species and their correspondence with reproductive communities have not been tested quantitatively, allowing zoologists to argue that botanists have been overly influenced by a few 'botanical horror stories', such as dandelions, blackberries and oaks. Here we analyse phenetic and/or crossing relationships in over 400 genera of plants and animals. We show that although discrete phenotypic clusters exist in most genera (> 80%), the correspondence of taxonomic species to these clusters is poor (< 60%) and no different between plants and animals. Lack of congruence is caused by polyploidy, asexual reproduction and over-differentiation by taxonomists, but not by contemporary hybridization. Nonetheless, crossability data indicate that 70% of taxonomic species and 75% of phenotypic clusters in plants correspond to reproductively independent lineages (as measured by postmating isolation), and thus represent biologically real entities. Contrary to conventional wisdom, plant species are more likely than animal species to represent reproductively independent lineages.

  19. Global diversity and phylogeny of pelagic shrimps of the former genera Sergestes and Sergia (Crustacea, Dendrobranchiata, Sergestidae), with definition of eight new genera

    DEFF Research Database (Denmark)

    Vereshchaka, Alexander L.; Olesen, Jørgen; Lunina, Anastasia A.

    2014-01-01

    , Phorcosergia, Prehensilosergia, Robustosergia, Scintillosergia, Challengerosergia, and Lucensosergia) and seven genera of the former genus Sergestes (Sergestes, Deosergestes, Eusergestes, Allosergestes, Parasergestes, Neosergestes, and a new genus Cornutosergestes). An identification key is presented for all...... genera of the family Sergestidae. The phylogeny of Sergestidae is mainly based on three categories of characters related to: (1) general decapod morphology, (2) male copulatory organs, and (3) photophores. Only simultaneous use of all three character types resulted in a resolved tree with minimal...

  20. Molecular taxonomy of scopulariopsis-like fungi with description of new clinical and environmental species

    NARCIS (Netherlands)

    Jagielski, Tomasz; Sandoval-Denis, Marcelo; Yu, Jin; Yao, Limin; Bakuła, Zofia; Kalita, Joanna; Skóra, Magdalena; Krzyściak, Paweł; de Hoog, G Sybren; Guarro, Josep; Gené, Josepa

    The taxonomy of scopulariopsis-like fungi, comprising numerous human opportunistic species, has recently been reassessed with delineation of the genera Microascus, Pithoascus, Pseudoscopulariopsis, and Scopulariopsis, using morphological data and multilocus sequence analysis based on four loci (ITS,

  1. Revision of the world species of Xeris Costa (Hymenoptera: Siricidae)

    Science.gov (United States)

    Henri Goulet; Caroline Boudreault; Nathan M. Schiff

    2015-01-01

    Xeris is one of ten extant genera of Siricidae known as as woodwasps or horntails. They are important wood-boring Hymenoptera from the Northern Hemisphere. Adults and larvae of Xeris are often intercepted at ports and are consequently of concern as potential alien invasive species. The genus consists of 16 species with eight in...

  2. The systematic wood anatomy of the Moraceae (Uriticales). V. Genera of the tribe Moreae without urticaceous stamens

    NARCIS (Netherlands)

    Welle, ter B.J.H.; Koek-Noorman, J.; Topper, S.M.C.

    1983-01-01

    The wood anatomy of the Moreae without urticaceous stamens is described in detail. Generic descriptions of the following genera are provided: Antiaropsis, Artocarpus, Bagassa, Batocarpus, Clarisia, Parartocarpus, Poulsenia, Prainea, Sorocea, Sparattosyce, and Treculia. Wood anatomical variation

  3. The systematic wood anatomy of the Moraceae (Urticales) IV. Genera of the tribe Moreae with urticaceous stamens

    NARCIS (Netherlands)

    Welle, ter B.J.H.; Koek-Noorman, J.; Topper, S.M.C.

    1983-01-01

    The wood anatomy of the genera of the tribe Moreae with urticaceous stamens, viz. Broussonetia, Madura s.l. (including Cardiogyne, Chlorophora, and Cudrania), Malaisia, Milicia, Morus, Olmedia, Pachytrophe, Plecospermum, Sloetiopsis, Streblus s.l. (including Paratrophis, Phyllochlamys,

  4. Pre-Clinical Testing of Real-Time PCR Assays for Diarrheal Disease Agents of Genera Escherichia and Shigella

    Science.gov (United States)

    2014-05-16

    FOR DIARRHEAL DISEASE AGENTS OF GENERA ESCHERICHIA AND SHIGELLA May 16, 2014 Reporting Period: October 1, 2010 to September 30, 2013...10-2010 - 30-09-2013 PRE-CLINICAL TESTING OF REAL-TIME PCR ASSAYS FOR DIARRHEAL DISEASE AGENTS OF GENERA ESCHERICHIA AND SHIGELLA ...Texas (MOA 2007 - 2013. Agreement No.: DODI 4000.19; AFI 25-201). Pre-clinical test results qualify ETEC and Shigella real-time PCR assays as lead

  5. Lead (Pb) bioaccumulation; genera Bacillus isolate S1 and SS19 as a case study

    Science.gov (United States)

    Arifiyanto, Achmad; Apriyanti, Fitria Dwi; Purwaningsih, Puput; Kalqutny, Septian Hary; Agustina, Dyah; Surtiningsih, Tini; Shovitri, Maya; Zulaika, Enny

    2017-06-01

    Lead (Pb) includes a group of large heavy metal in nature was toxic either on animal or human and did not provide an advantage function biologically. Bacillus isolates S1 and SS19 known resistant to lead up to 50 mg / L PbCl2. In this research will be examined whether genera Bacillus isolates S1 and SS19 could accumulate metal lead (Pb), their capability in accumulating and profile protein differences when the bacteria genera Bacillus isolates S1 and SS19 get exposed metal lead (Pb). Inoculum at age ± 9 hours are used, with a Nutrient Broth (NB) containing 50, 75 and 100 mg / L PbCl2. Inductively Coupled Plasma Atomic Emission Spectrometry (ICP) used to assessed Pb2+ concentrations. Bioaccumulation levels of Pb2+ by Bacillus isolate S1 and SS19 related to the distinction of beginning concentration to the final concentration. Bacillus isolate S1 achieved 53% and 51% bioaccumulation efficiency rate in lead presence concentration (75 and 100 mg/L) and 51% (50 mg/L). Another way Bacillus isolate SS19 was able to accumulate 57% (50 mg/L PbCl2) and kept stable on 36% bioaccumulation efficiency rate (75 and 100 mg/L PbCl2). Regarding SDS-PAGE electrophoresis protein profile result, protein in ± 127 kDa, molecule mass detected in the presence of Lead for Bacillus isolate S1.

  6. Distributional patterns and possible origins of the tribes and genera of Coelidiinae (Homoptera, Membracoidea, Cicadellidae

    Directory of Open Access Journals (Sweden)

    Mervin W Nielson

    2000-12-01

    Full Text Available Leafhoppers are well known biological indicators of zoogeographical regions owing, in part, to their phytodependency, high host plant specificity and relatively low vagility. In this connection, we discuss distributional patterns and possible zoogeographical origins of nine constituent tribes and their genera of the pantropical subfamily Coelidiinae. Among 118 known genera, only eight currently occupy more than one zoogeographical region, indicating an extremely high endemic profile which supports the proposed centers of origin and relatively low rate of intercontinental dispersal. The pantropical tribe Coelidiini is suggested as the basal group of the subfamily which is believed to have arisen prior to continental drift (late Jurassic-early Cretaceous because there appears to be no other evidence at the present time to explain its near cosmopolitan distribution. Possible origins of three Old World tribes, Hikangiini (Ethiopian, Thagriini (Oriental and Thanini (Australian and four New World -(Neotropical tribes, Teruliini, Tinobregmini, Gabritini and Sandersellini are elucidated. The tribe Youngolidiini occupies the Neotropical and Ethiopian realms but its origin is problematical. There appears to be ample evidence that origin/dispersal patterns are related to the geological history of the areas occupied by its faunal members.

  7. Efficient distinction of invasive aquatic plant species from non-invasive related species using DNA barcoding

    NARCIS (Netherlands)

    Ghahramanzadeh, R.; Esselink, G.; Kodde, L.P.; Duistermaat, H.; Valkenburg, van J.L.C.H.; Marashi, S.H.; Smulders, M.J.M.; Wiel, van de C.C.M.

    2013-01-01

    Biological invasions are regarded as threats to global biodiversity. Among invasive aliens, a number of plant species belonging to the genera Myriophyllum, Ludwigia and Cabomba, and to the Hydrocharitaceae family pose a particular ecological threat to water bodies. Therefore, one would try to

  8. Distribution of a Nocardia brasiliensis Catalase Gene Fragment in Members of the Genera Nocardia, Gordona, and Rhodococcus

    Science.gov (United States)

    Vera-Cabrera, Lucio; Johnson, Wendy M.; Welsh, Oliverio; Resendiz-Uresti, Francisco L.; Salinas-Carmona, Mario C.

    1999-01-01

    An immunodominant protein from Nocardia brasiliensis, P61, was subjected to amino-terminal and internal sequence analysis. Three sequences of 22, 17, and 38 residues, respectively, were obtained and compared with the protein database from GenBank by using the BLAST system. The sequences showed homology to some eukaryotic catalases and to a bromoperoxidase-catalase from Streptomyces violaceus. Its identity as a catalase was confirmed by analysis of its enzymatic activity on H2O2 and by a double-staining method on a nondenaturing polyacrylamide gel with 3,3′-diaminobenzidine and ferricyanide; the result showed only catalase activity, but no peroxidase. By using one of the internal amino acid sequences and a consensus catalase motif (VGNNTP), we were able to design a PCR assay that generated a 500-bp PCR product. The amplicon was analyzed, and the nucleotide sequence was compared to the GenBank database with the observation of high homology to other bacterial and eukaryotic catalases. A PCR assay based on this target sequence was performed with primers NB10 and NB11 to confirm the presence of the NB10-NB11 gene fragment in several N. brasiliensis strains isolated from mycetoma. The same assay was used to determine whether there were homologous sequences in several type strains from the genera Nocardia, Rhodococcus, Gordona, and Streptomyces. All of the N. brasiliensis strains presented a positive result but only some of the actinomycetes species tested were positive in the PCR assay. In order to confirm these findings, genomic DNA was subjected to Southern blot analysis. A 1.7-kbp band was observed in the N. brasiliensis strains, and bands of different molecular weight were observed in cross-reacting actinomycetes. Sequence analysis of the amplicons of selected actinomycetes showed high homology in this catalase fragment, thus demonstrating that this protein is highly conserved in this group of bacteria. PMID:10325357

  9. Additional records of cicadas (Hemiptera: Cicadidae) to the fauna of Mindanao, Philippines, with the description of three new species and a key to the species of Champaka Distant.

    Science.gov (United States)

    Lee, Young June

    2015-08-30

    This paper provides the revised checklist of the tribes, subtribes, genera, and species of the family Cicadidae from Mindanao, Philippines, comprising 22 species belonging to 16 genera. Three new species, Champaka solivenae sp. nov., Purana crassinotata sp. nov., and Ggomapsalta fragilis sp. nov., are described. Lembeja fatiloqua (Stål, 1870) is added to the list, which was omitted in the previous checklist. Neoncotympana leeseungmoi Lee, 2011 is added to the list, which was described after the previous checklist. Oncotympana averta Lee, 2011 is newly recorded from Mindanao, replacing Oncotympana sp. listed in the previous checklist. A key to the 12 species of Champaka Distant, 1905 is provided.

  10. A new species of Rhytidognathus (Carabidae, Migadopini) from Argentina.

    Science.gov (United States)

    Roig-Juñent, Sergio; Rouaux, Julia

    2012-01-01

    The Migadopini are a small tribe of Carabidae with 47 species that occur in South America, Australia, and New Zealand, in the sub-Antarctic areas. In South America, most of the genera inhabit areas related to sub-Antartic Nothofagus forest except two monogeneric genera, the Ecuadorian genus Aquilex Moret and the Pampean genus Rhytidognathus Chaudoir. These two genera are geographically isolated from the remaining five South American genera. New material of Rhytidognathus from the northeast of Buenos Aires province and from Entre Ríos province permits establishing that the previous records of Rhytidognathus ovalis (Dejean) for Argentina were erroneous and that it belongs to a new species. Based on external morphological characters and from male and female genitalia we describe Rhytidognathus platensis as a new species. In this contribution we provide illustrations, keys, habitat characteristics and some biogeographic considerations on the distribution of Rhytidognathus.

  11. A new species of Rhytidognathus (Carabidae, Migadopini from Argentina

    Directory of Open Access Journals (Sweden)

    Sergio Roig-Junent

    2012-11-01

    Full Text Available The Migadopini are a small tribe of Carabidae with 47 species that occur in South America, Australia, and New Zealand, in the sub-Antarctic areas. In South America, most of the genera inhabit areas related to sub-Antartic Nothofagus forest except two monogeneric genera, the Ecuadorian genus Aquilex Moret and the Pampean genus Rhytidognathus Chaudoir. These two genera are geographically isolated from the remaining five South American genera. New material of Rhytidognathus from the northeast of Buenos Aires province and from Entre Ríos province permits establishing that the previous records of Rhytidognathus ovalis (Dejean for Argentina were erroneous and that it belongs to a new species. Based on external morphological characters and from male and female genitalia we describe Rhytidognathus platensis as a new species. In this contribution we provide illustrations, keys, habitat characteristics and some biogeographic considerations on the distribution of Rhytidognathus.

  12. A three-genome phylogeny of malaria parasites (Plasmodium and closely related genera): evolution of life-history traits and host switches.

    Science.gov (United States)

    Martinsen, Ellen S; Perkins, Susan L; Schall, Jos J

    2008-04-01

    Phylogenetic analysis of genomic data allows insights into the evolutionary history of pathogens, especially the events leading to host switching and diversification, as well as alterations of the life cycle (life-history traits). Hundreds, perhaps thousands, of malaria parasite species exploit squamate reptiles, birds, and mammals as vertebrate hosts as well as many genera of dipteran vectors, but the evolutionary and ecological events that led to this diversification and success remain unresolved. For a century, systematic parasitologists classified malaria parasites into genera based on morphology, life cycle, and vertebrate and insect host taxa. Molecular systematic studies based on single genes challenged the phylogenetic significance of these characters, but several significant nodes were not well supported. We recovered the first well resolved large phylogeny of Plasmodium and related haemosporidian parasites using sequence data for four genes from the parasites' three genomes by combining all data, correcting for variable rates of substitution by gene and site, and using both Bayesian and maximum parsimony analyses. Major clades are associated with vector shifts into different dipteran families, with other characters used in traditional parasitological studies, such as morphology and life-history traits, having variable phylogenetic significance. The common parasites of birds now placed into the genus Haemoproteus are found in two divergent clades, and the genus Plasmodium is paraphyletic with respect to Hepatocystis, a group of species with very different life history and morphology. The Plasmodium of mammal hosts form a well supported clade (including Plasmodium falciparum, the most important human malaria parasite), and this clade is associated with specialization to Anopheles mosquito vectors. The Plasmodium of birds and squamate reptiles all fall within a single clade, with evidence for repeated switching between birds and squamate hosts.

  13. Partition functions for quantum gravity, black holes, elliptic genera and Lie algebra homologies

    Energy Technology Data Exchange (ETDEWEB)

    Bonora, L., E-mail: bonora@sissa.it [International School for Advanced Studies (SISSA), Via Bonomea 265, 34136 Trieste (Italy); INFN, Sezione di Trieste (Italy); Bytsenko, A.A., E-mail: abyts@uel.br [Departamento de Fisica, Universidade Estadual de Londrina, Caixa Postal 6001, Londrina (Brazil)

    2011-11-11

    There is a remarkable connection between quantum generating functions of field theory and formal power series associated with dimensions of chains and homologies of suitable Lie algebras. We discuss the homological aspects of this connection with its applications to partition functions of the minimal three-dimensional gravities in the space-time asymptotic to AdS{sub 3}, which also describe the three-dimensional Euclidean black holes, the pure N=1 supergravity, and a sigma model on N-fold generalized symmetric products. We also consider in the same context elliptic genera of some supersymmetric sigma models. These examples can be considered as a straightforward application of the machinery of modular forms and spectral functions (with values in the congruence subgroup of SL(2,Z)) to partition functions represented by means of formal power series that encode Lie algebra properties.

  14. 77 FR 61627 - Endangered Species; Marine Mammals; Receipt of Applications for Permit

    Science.gov (United States)

    2012-10-10

    ... applicant over a 5-year period. Families Lemuridae Hylobatidae Species Snow leopard (Uncia uncia) Amur tiger... registration under 50 CFR 17.21(g) for the following families, genera and species, to enhance their propagation... Gruidae Genus Tragopan Species Asian tapir (Tapirus indicus) Lion-tailed macaque (Macaca silenus...

  15. Limnephilid taxa revised by speciation traits: Rhadicoleptus, Isogamus, Melampophylax genera, Chaetopteryx rugulosa, Psilopteryx psorosa species groups, Drusus bolivari, Annitella kosciuszkii species complexes (Trichoptera: Limnephilidae)

    Czech Academy of Sciences Publication Activity Database

    Oláh, J.; Chvojka, P.; Coppa, G.; Godunko, Roman J.; Lodovici, O.; Majecka, K.; Majecki, J.; Szczęsny, B.; Urbanic, G.; Valle, M.

    2015-01-01

    Roč. 46, č. 1 (2015), s. 3-117 ISSN 0237-5419 Institutional support: RVO:60077344 Keywords : speciation traits * neutral and adaptive molecular markers * neutral and adaptive traits Subject RIV: EG - Zoology

  16. Description of the lynx spiders of a canopy fogging project in northern Borneo (Araneae: Oxyopidae), with description of a new genus and six new species of Hamataliwa

    NARCIS (Netherlands)

    Deeleman - Reinhold, C.L.

    2009-01-01

    All oxyopid spider species collected in a long-term ecological canopy project in northern Borneo are described. A total of nine species in three genera could be established, one of which belongs to a new genus. Four species could be assigned to known species, five are described as new species in the

  17. Onychiurid species from Wanda Mountains in China, with descriptions of two new species (Collembola, Onychiuridae)

    Science.gov (United States)

    Sun, Xin; Wu, Donghui

    2014-01-01

    Abstract A checklist of onychiurid species from the Wanda Mountains in China is presented. Eighteen species belonging to twelve genera have been found, including two new species. Bionychiurus qinglongensis sp. n. can be easily distinguished from other known species of the genus by the absence of pseudocelli on Th. I tergum and fewer number of vesicles in postantennal organ. Onychiurus heilongjiangensis sp. n. is diagnosed by pseudocellar formulae as 32/133/33352 dorsally and 3/011/31120 ventrally, parapseudocellar formula as 0/000/111001+1m, ratio of anal spine/unguis as 0.6, unguiculus without inner basal lamella, and male ventral organ absent. PMID:25147452

  18. Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and 13C NMR data of diterpenes

    International Nuclear Information System (INIS)

    Scotti, Luciana; Tavares, Josean Fechine; Silva, Marcelo Sobral da; Falcao, Emanuela Viana; Silva, Luana de Morais e; Soares, Gabriela Cristina da Silva; Scotti, Marcus Tullius

    2012-01-01

    The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from 13 C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

  19. Morphology of the axial skeleton of seven bat genera (Chiroptera: Phyllostomidae

    Directory of Open Access Journals (Sweden)

    PABLO J. GAUDIOSO

    2017-10-01

    Full Text Available ABSTRACT Here we present detailed descriptions and comparisons of the axial skeleton of seven species of bats belonging to five subfamilies of Phyllostomidae of different trophic guilds. The material examined consisted of 34 complete skeletons of seven species. For five of the studied species, previous descriptions have not been conducted, and for the vampires only limited information is available, so that descriptions for these species are here completed. The axial skeleton has characters that allow grouping of the species phylogenetically of the same subfamily and by feeding habits. At the same time, there are characters that associate species from different subfamilies with different types of diet or ways to obtain food.

  20. Endangered Species

    Science.gov (United States)

    EPA's Endangered Species Protection Program helps promote recovery of listed species. The ESPP determines if pesticide use in a geographic area may affect any listed species. Find needed limits on pesticide use in Endangered Species Protection Bulletins.

  1. Molecular Phylogeny of Triticum and Aegilops Genera Based on ITS and MATK Sequence Data

    International Nuclear Information System (INIS)

    Dizkirici, A.; Kansu, C.; Onde, S.

    2016-01-01

    Understanding the phylogenetic relationship between Triticum and Aegilops species, which form a vast gene pool of wheat, is very important for breeding new cultivated wheat varieties. In the present study, phylogenetic relationships between Triticum (12 samples from 4 species) and Aegilops (24 samples from 8 species) were investigated using sequences of the nuclear ITS rDNA gene and partial sequences of the matK gene of chloroplast genome. The phylogenetic relationships among species were reconstructed using Maximum Likelihood method. The constructed tree based on the sequences of the nuclear component (ITS) displayed a close relationship between polyploid wheats and Aegilops speltoides species which provided new evidence for the source of the enigmatic B genome donor as Ae. speltoides. Concurrent clustering of Ae. cylindrica and Ae. tauschii and their close positioning to polyploid wheats pointed the source of the D genome as one of these species. As reported before, diploid Triticum species (i.e. T. urartu) were identified as the A genome donors and the positioning of these diploid wheats on the constructed tree are meaningful. The constructed tree based on the chloroplastic matK sequences displayed same relationship between polyploid wheats and Ae. speltoides species providing evidence for the later species being the chloroplast donors for polyploid wheats. Therefore, our results supported the idea of coinheritance of nuclear and chloroplast genomes where Ae. speltoides was the maternal donor. For both trees the remaining Aegilops species produced a distinct cluster whereas with the exception of T. urartu, diploid Triticum species displayed a monophyletic structure. (author)

  2. Ticks associated with macquarie island penguins carry arboviruses from four genera.

    Directory of Open Access Journals (Sweden)

    Lee Major

    Full Text Available Macquarie Island, a small subantarctic island, is home to rockhopper, royal and king penguins, which are often infested with the globally distributed seabird tick, Ixodes uriae. A flavivirus, an orbivirus, a phlebovirus, and a nairovirus were isolated from these ticks and partial sequences obtained. The flavivirus was nearly identical to Gadgets Gully virus, isolated some 30 year previously, illustrating the remarkable genetic stability of this virus. The nearest relative to the orbivirus (for which we propose the name Sandy Bay virus was the Scottish Broadhaven virus, and provided only the second available sequences from the Great Island orbivirus serogroup. The phlebovirus (for which we propose the name Catch-me-cave virus and the previously isolated Precarious Point virus were distinct but related, with both showing homology with the Finnish Uukuniemi virus. These penguin viruses provided the second and third available sequences for the Uukuniemi group of phleboviruses. The nairovirus (for which we propose the name Finch Creek virus was shown to be related to the North American Tillamook virus, the Asian Hazara virus and Nairobi sheep disease virus. Macquarie Island penguins thus harbour arboviruses from at least four of the seven arbovirus-containing genera, with related viruses often found in the northern hemisphere.

  3. Functional characterization of Gram-negative bacteria from different genera as multiplex cadmium biosensors.

    Science.gov (United States)

    Bereza-Malcolm, Lara; Aracic, Sanja; Kannan, Ruban; Mann, Gülay; Franks, Ashley E

    2017-08-15

    Widespread presence of cadmium in soil and water systems is a consequence of industrial and agricultural processes. Subsequent accumulation of cadmium in food and drinking water can result in accidental consumption of dangerous concentrations. As such, cadmium environmental contamination poses a significant threat to human health. Development of microbial biosensors, as a novel alternative method for in situ cadmium detection, may reduce human exposure by complementing traditional analytical methods. In this study, a multiplex cadmium biosensing construct was assembled by cloning a single-output cadmium biosensor element, cadRgfp, and a constitutively expressed mrfp1 onto a broad-host range vector. Incorporation of the duplex fluorescent output [green and red fluorescence proteins] allowed measurement of biosensor functionality and viability. The biosensor construct was tested in several Gram-negative bacteria including Pseudomonas, Shewanella and Enterobacter. The multiplex cadmium biosensors were responsive to cadmium concentrations ranging from 0.01 to 10µgml -1 , as well as several other heavy metals, including arsenic, mercury and lead at similar concentrations. The biosensors were also responsive within 20-40min following exposure to 3µgml -1 cadmium. This study highlights the importance of testing biosensor constructs, developed using synthetic biology principles, in different bacterial genera. Copyright © 2017 Elsevier B.V. All rights reserved.

  4. Resistance of Citrus and Related Genera to Diaphorina citri Kuwayama (Hemiptera: Liviidae).

    Science.gov (United States)

    Borgoni, P C; Vendramim, J D; Lourencão, A L; Machado, M A

    2014-10-01

    The present study was developed to evaluate the resistance of the following genotypes of Citrus and related genera to this pest: 'Pera,' 'Natal', and 'Washington Navel' oranges (Citrus sinensis), 'Marsh Seedless' grapefruit (Citrus paradisi), hardy orange 'Rubidoux' (Poncirus trifoliata), kumquat (Fortunella margarita Swingle), citrumelo 'Swingle' (C. paradisi x P. trifoliata), and citrange 'Troyer' (P. trifoliata x C. sinensis). The experiments were performed in greenhouses with plants grafted onto 'Rangpur' lime (Citrus limonia) and placed individually in voile cages. The preference for oviposition in a no-choice test, and the effect of genotype were evaluated. The egg-adult cycle was monitored to determine the effect of genotype on the biology of the insect. Poncirus 'Rubidoux' was the least preferred genotype for oviposition; reduced number of eggs was also found to occur on citrange 'Troyer', and 'Marsh Seedless' was the genotype with the most eggs. No significant variation in the duration of the embryonic period was observed; however, a difference in the viability of eggs was found, with the lowest egg viabilities on 'Swingle.' Kumquat and 'Marsh Seedless' genotypes were correlated with increased durations of the nymphal phase, however, there was no difference in the survival of this phase. Fecundity of females on 'Troyer', 'Swingle', and kumquat was reduced. Considering all of the evaluated parameters, it was concluded that cultivars of sweet orange are the most susceptible genotypes to Diaphorina citri. Regarding oviposition, P. trifoliata 'Rubidoux' showed resistance of the antixenosis type.

  5. [Phylogenetic relationships among the genera of Taxodiaceae and Cupressaceae from 28S rDNA sequences].

    Science.gov (United States)

    Li, Chun-Xiang; Yang, Qun

    2003-03-01

    DNA sequences from 28S rDNA were used to assess relationships between and within traditional Taxodiaceae and Cupressaceae s.s. The MP tree and NJ tree generally are similar to one another. The results show that Taxodiaceae and Cupressaceae s.s. form a monophyletic conifer lineage excluding Sciadopitys. In the Taxodiaceae-Cupressaceae s.s. monophyletic group, the Taxodiaceae is paraphyletic. Taxodium, Glyptostrobus and Cryptomeria forming a clade(Taxodioideae), in which Glyptostrobus and Taxodium are closely related and sister to Cryptomeria; Sequoia, Sequoiadendron and Metasequoia are closely related to each other, forming another clade (Sequoioideae), in which Sequoia and Sequoiadendron are closely related and sister to Metasequoia; the seven genera of Cupressaceae s.s. are found to be closely related to form a monophyletic lineage (Cupressoideae). These results are basically similar to analyses from chloroplast gene data. But the relationships among Taiwania, Sequoioideae, Taxodioideae, and Cupressoideae remain unclear because of the slow evolution rate of 28S rDNA, which might best be answered by sequencing more rapidly evolving nuclear genes.

  6. Floral ontogeny in legume genera Petalostylis, Labichea, and Dialium (Caesalpinioideae: Cassieae), a series in floral reduction.

    Science.gov (United States)

    Tucker, S

    1998-02-01

    Floral ontogeny of taxa of two subtribes (Labicheinae, Dialiinae) of caesalpinioid tribe Cassieae, characterized by reduced number of floral organs, was compared. All three taxa studied are distichous; Petalostylis labicheoides flowers are solitary in leaf axils, Labichea lanceolata has few-flowered racemes, and Dialium guineense has numerous-flowered cymes. The first sepal primordium in each is initiated abaxially and nonmedianly. Order of organogenesis in Petalostylis is: five sepals bidirectionally, five petals and carpel simultaneously, then five stamens bidirectionally, starting abaxially. The order in Labichea is: five sepals helically (one lagging in time), five petals unidirectionally starting abaxially, the carpel and petals concurrently, then two stamens successively, starting laterally. Order in Dialium is: five sepals bidirectionally, the single petal adaxially, and lastly the carpel and two stamens concurrently. Specializations include (1) reduction of the five sepals to four by fusion in Petalostylis and Labichea; (2) reduction of petal number to one in Dialium; (3) reduction of stamen number to two in Labichea and Dialium, and reduction of functional stamens to three in Petalostylis; and (4) an elaborate, late-developing style in Petalostylis. Floral asymmetry, another specialization, characterizes Labichea, expressed by dissimilar stamens, while the other genera have zygomorphic flowers. Floral ontogenies are compared with other taxa of Cassieae.

  7. Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.

    Science.gov (United States)

    Gupta, Radhey S; Lo, Brian; Son, Jeen

    2018-01-01

    propose here division of the genus Mycobacterium into an emended genus Mycobacterium encompassing the " Tuberculosis-Simiae " clade, which includes all of the major human pathogens, and four novel genera viz. Mycolicibacterium gen. nov., Mycolicibacter gen. nov., Mycolicibacillus gen. nov. and Mycobacteroides gen. nov. corresponding to the " Fortuitum-Vaccae," " Terrae," " Triviale ," and " Abscessus-Chelonae" clades, respectively. With the division of mycobacterial species into these five distinct groups, attention can now be focused on unique genetic and molecular characteristics that differentiate members of these groups.

  8. Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

    Science.gov (United States)

    Gupta, Radhey S.; Lo, Brian; Son, Jeen

    2018-01-01

    described clades, we propose here division of the genus Mycobacterium into an emended genus Mycobacterium encompassing the “Tuberculosis-Simiae” clade, which includes all of the major human pathogens, and four novel genera viz. Mycolicibacterium gen. nov., Mycolicibacter gen. nov., Mycolicibacillus gen. nov. and Mycobacteroides gen. nov. corresponding to the “Fortuitum-Vaccae,” “Terrae,” “Triviale,” and “Abscessus-Chelonae” clades, respectively. With the division of mycobacterial species into these five distinct groups, attention can now be focused on unique genetic and molecular characteristics that differentiate members of these groups. PMID:29497402

  9. Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

    Directory of Open Access Journals (Sweden)

    Radhey S. Gupta

    2018-02-01

    into the five described clades, we propose here division of the genus Mycobacterium into an emended genus Mycobacterium encompassing the “Tuberculosis-Simiae” clade, which includes all of the major human pathogens, and four novel genera viz. Mycolicibacterium gen. nov., Mycolicibacter gen. nov., Mycolicibacillus gen. nov. and Mycobacteroides gen. nov. corresponding to the “Fortuitum-Vaccae,” “Terrae,” “Triviale,” and “Abscessus-Chelonae” clades, respectively. With the division of mycobacterial species into these five distinct groups, attention can now be focused on unique genetic and molecular characteristics that differentiate members of these groups.

  10. Chemical releases of social behavior, II. source and specificity of the odor trail substances in four attine genera. (Hymenoptera: Formicidae)

    Science.gov (United States)

    Murray S. Blum; John C. Moser; A.D. Cordero

    1964-01-01

    The higher members of the tribe Attini characteristically lay persistent and extensive odor trails especially in many neotropical areas. Thus, in Acromyrmex and Atta, long columns of foraging workers are frequently present on the odor trails but in the less specialized attine genera, workers may forage either in files or singly. Weber (1958...

  11. PHYLOGENETIC RELATIONSHIP OF THE RED TIDE DINOFLAGELLATE GYMNODINIUM BREVE TO OTHER MEMBERS OF THE GENERA GYMNODINIUM AND GYRODINIUM

    Science.gov (United States)

    Phylogenetic relationships between the red-tide dinoflagellate Gymnodinium breve and other members of the genera Gymnodinium and Gyrodinium have not been studied at the molecular level. G. breve is most noted for its production of brevetoxin, which has been linked to extensive f...

  12. Testing freshwater Lago Mare dispersal theory on the phylogeny relationships of iberian cyprinid genera Chondrostoma and Squalius (Cypriniformes, Cyprinidae

    Directory of Open Access Journals (Sweden)

    Carmona, José Ambrosio

    2003-12-01

    Full Text Available A phylogeny of the species in the genera Chondrostoma and Squalius was constructed based on the complete mitochondrial cytochrome b gene (1140pb. The molecular phylogeny was used to test the effect of the Mediterranean Lago Mare dispersal theory on the processes of divergence and speciation of European freshwater fishes. Phylogenetic relationships among Squalius samples and the molecular clock revealed that the ancestor of the current Iberian Squalius species inhabited a wide geographic area in the central and southwestern part of the former Iberian Peninsula during the Miocene before the Lago Mare phase. Similarly, the four main Iberian lineages of the genus Chondrostoma originated in the Middle-Upper Miocene. Hence, the Lago Mare phase of the Mediterranean Sea seems to have been a too recent paleogeographic event to have had any major impact on the dispersion of Squalius and Chondrostoma species. However, the reduction of the water-bodies during the Tortonian and Messinian may have intensified the isolation of populations. The Operational Biogeographic Units recovered from the Squalius and Chondrostoma phylogenies also reject the Lago Mare dispersal theory and support the idea that the differentiation processes were due to both the formation of the current hydrographical basin during the Plio-Pleistocene as well as to an earlier endorrheism event that occurred prior to hydrographical configuration.Realizamos una filogenia de los géneros Chondrostoma y Squalius mediante el estudio de la secuencia completa del gen mitocondrial citocromo b (1140pb. La filogenia molecular fue usada para comprobar el efecto que la teoría de dispersión del Mediterráneo Lago Mare ha tenido sobre los procesos de divergencia y especiación en los peces de agua dulce europeos. Las relaciones filogenéticas entre las muestras de Squalius y la aplicación del reloj molecular pusieron de manifiesto que el ancestro de las actuales especies ibéricas de Squalius habitaba

  13. Evolutionary patterns of range size, abundance and species richness in Amazonian angiosperm trees

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    Kyle Dexter

    2016-09-01

    Full Text Available Amazonian tree species vary enormously in their total abundance and range size, while Amazonian tree genera vary greatly in species richness. The drivers of this variation are not well understood. Here, we construct a phylogenetic hypothesis that represents half of Amazonian tree genera in order to contribute to explaining the variation. We find several clear, broad-scale patterns. Firstly, there is significant phylogenetic signal for all three characteristics; closely related genera tend to have similar numbers of species and similar mean range size and abundance. Additionally, the species richness of genera shows a significant, negative relationship with the mean range size and abundance of their constituent species. Our results suggest that phylogenetically correlated intrinsic factors, namely traits of the genera themselves, shape among lineage variation in range size, abundance and species richness. We postulate that tree stature may be one particularly relevant trait. However, other traits may also be relevant, and our study reinforces the need for ambitious compilations of trait data for Amazonian trees. In the meantime, our study shows how large-scale phylogenies can help to elucidate, and contribute to explaining, macroecological and macroevolutionary patterns in hyperdiverse, yet poorly understood regions like the Amazon Basin.

  14. A new genus and species in the mite family Eupodidae (Acari, Eupodoidea) from Crimea.

    Science.gov (United States)

    Khaustov, Alexander A

    2014-01-01

    A new genus Pseudoeupodes Khaustov, gen. n. and new species Pseudoeupodes porosus sp. n. are described from moss in Crimea. The taxonomy of the Eupodidae and some other families and genera of Eupodoidea is reviewed. The genus Turanopenthalodes Barilo, 1988 is transferred from Penthalodidae to Penthaleidae. The family Cocceupodidae Jesionowska, 2010 and the genus Filieupodes Jesionowska, 2010 are considered as junior synonyms of Eupodidae Koch, 1842 and Cocceupodes Thor, 1934, respectively. A key to genera of the family Eupodidae is provided.

  15. Three new species of the genus Arge (Hymenoptera: Symphyta: Argidae from South Korea with key to species of the subfamily Arginae

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    Jin-Kyung Choi

    2016-06-01

    Full Text Available Three new species, Arge koreana Wei & Lee sp. nov. from South Korea, Arge pseudorejecta Wei & Lee sp. nov., and Arge shengi Wei & Lee sp. nov. from South Korea and China are described. Keys to known genera of Argidae and known species of Arginae from South Korea are provided.

  16. Butterfly species richness and diversity in the Trishna Wildlife Sanctuary in South Asia.

    Science.gov (United States)

    Majumder, Joydeb; Lodh, Rahul; Agarwala, B K

    2013-01-01

    Several wildlife sanctuaries in the world are home to the surviving populations of many endemic species. Trishna wildlife sanctuary in northeast India is protected by law, and is home to the last surviving populations of Asian bison (Bos gorus Smith), spectacle monkey (Trachypithecus phayrie Blyth), capped langur (Trachypithecus pileatus Blyth), slow loris (Nycticebus coucang Boddaert), wild cat (Felis chaus Schreber), and wild boars (Sus scrofa L.), among many other animals and plants. The sanctuary was explored for species richness and diversity of butterflies. A six-month-long study revealed the occurrence of 59 butterfly species that included 21 unique species and 9 species listed in the threatened category. The mixed moist deciduous mature forest of the sanctuary harbored greater species richness and species diversity (39 species under 31 genera) than other parts of the sanctuary, which is comprised of regenerated secondary mixed deciduous forest (37 species under 32 genera), degraded forests (32 species under 28 genera), and open grassland with patches of plantations and artificial lakes (24 species under 17 genera). The majority of these species showed a distribution range throughout the Indo-Malayan region and Australasia tropics, and eight species were distributed in the eastern parts of South Asia, including one species, Labadea martha (F.), which is distributed in the eastern Himalayas alone. Estimator Chao 2 provided the best-predicted value of species richness. The steep slope of the species accumulation curve suggested the occurrence of a large number of rare species, and a prolonged gentle slope suggested a higher species richness at a higher sample abundance. The species composition of vegetation-rich habitats showed high similarity in comparison to vegetation-poor habitats.

  17. Additions to the Encyrtidae and Mymaridae (Chalcidoidea of India with new distribution and host records for some species

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    A. Rameshkumar

    2015-06-01

    Results and conclusions. A total of 961 specimens were collected, from which 883 COI sequences were obtained. The sequences generated corresponded to 289 barcoding species and 30 identified genera. The most speciose genera were Heterospilus Haliday (170 spp., Ecphylus Förster (19 spp., Allorhogas Gahan (15 spp. and Callihormius Ashmead (14 spp.. Addition of previously collected material increased the diversity of the subfamily in the region to 34 genera and 290 species. Paraphyly of Heterospilus with respect to Neoheterospilus and Heterospathius was again recovered. Twenty new species and two new genera (Sabinita Belokobylskij, Zaldívar-Riverón et Martínez, Ficobolus Martínez, Belokobylskij et Zaldívar-Riverón have been described so far from the material collected in this work.

  18. Sensitivity of calcification to thermal stress varies among genera of massive reef-building corals.

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    Juan P Carricart-Ganivet

    Full Text Available Reductions in calcification in reef-building corals occur when thermal conditions are suboptimal, but it is unclear how they vary between genera in response to the same thermal stress event. Using densitometry techniques, we investigate reductions in the calcification rate of massive Porites spp. from the Great Barrier Reef (GBR, and P. astreoides, Montastraea faveolata, and M. franksi from the Mesoamerican Barrier Reef (MBR, and correlate them to thermal stress associated with ocean warming. Results show that Porites spp. are more sensitive to increasing temperature than Montastraea, with calcification rates decreasing by 0.40 g cm(-2 year(-1 in Porites spp. and 0.12 g cm(-2 year(-1 in Montastraea spp. for each 1°C increase. Under similar warming trends, the predicted calcification rates at 2100 are close to zero in Porites spp. and reduced by 40% in Montastraea spp. However, these predictions do not account for ocean acidification. Although yearly mean aragonite saturation (Ω(ar at MBR sites has recently decreased, only P. astreoides at Chinchorro showed a reduction in calcification. In corals at the other sites calcification did not change, indicating there was no widespread effect of Ω(ar changes on coral calcification rate in the MBR. Even in the absence of ocean acidification, differential reductions in calcification between Porites spp. and Montastraea spp. associated with warming might be expected to have significant ecological repercussions. For instance, Porites spp. invest increased calcification in extension, and under warming scenarios it may reduce their ability to compete for space. As a consequence, shifts in taxonomic composition would be expected in Indo-Pacific reefs with uncertain repercussions for biodiversity. By contrast, Montastraea spp. use their increased calcification resources to construct denser skeletons. Reductions in calcification would therefore make them more susceptible to both physical and biological

  19. A set of primers for analyzing chloroplast DNA diversity in Citrus and related genera.

    Science.gov (United States)

    Cheng, Yunjiang; de Vicente, M Carmen; Meng, Haijun; Guo, Wenwu; Tao, Nengguo; Deng, Xiuxin

    2005-06-01

    Chloroplast simple sequence repeat (cpSSR) markers in Citrus were developed and used to analyze chloroplast diversity of Citrus and closely related genera. Fourteen cpSSR primer pairs from the chloroplast genomes of tobacco (Nicotiana tabacum L.) and Arabidopsis were found useful for analyzing the Citrus chloroplast genome (cpDNA) and recoded with the prefix SPCC (SSR Primers for Citrus Chloroplast). Eleven of the 14 primer pairs revealed some degree of polymorphism among 34 genotypes of Citrus, Fortunella, Poncirus and some of their hybrids, with polymorphism information content (PIC) values ranging from 0.057 to 0.732, and 18 haplotypes were identified. The cpSSR data were analyzed with NTSYS-pc software, and the genetic relationships suggested by the unweighted pair group method based on arithmetic means (UPGMA) dendrogram were congruent with previous taxonomic investigations: the results showed that all samples fell into seven major clusters, i.e., Citrus medica L., Poncirus, Fortunella, C. ichangensis Blanco, C. reticulata Swingle, C. aurantifolia (Christm.) Swingle and C. grandis (L.) Osbeck. The results of previous studies combined with our cpSSR analyses revealed that: (1) Calamondin (C. madurensis Swingle) is the result of hybridization between kumquat (Fortunella) and mandarin (C. reticulata), where kumquat acted as the female parent; (2) Ichang papeda (C. ichangensis) has a unique taxonomic status; and (3) although Bendiguangju mandarin (C. reticulata) and Satsuma mandarin (C. reticulata) are similar in fruit shape and leaf morphology, they have different maternal parents. Bendiguangju mandarin has the same cytoplasm as sweet orange (C. sinensis), whereas Satsuma mandarin has the cytoplasm of C. reticulata. Seventeen PCR products from SPCC1 and 21 from SPCC11 were cloned and sequenced. The results revealed that mononucleotide repeats as well as insertions and deletions of small segments of DNA were associated with SPCC1 polymorphism, whereas polymorphism

  20. Platystrophia (Orthida and new related Ordovician and Early Silurian brachiopod genera

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    Harper, David A. T.

    2007-03-01

    Full Text Available More than 150 Ordovician and Early Silurian brachiopod species have been assigned to the genus Platystrophia King, 1850 mainly on the basis of their Spirifer-like shell exteriors. King’s concept of the genus was based on Platystrophia biforata King, which is not conspecific with Terebratulites biforatus Schlotheim, traditionally regarded as the type species of Platystrophia. Porambonites costatus Pander, 1830 is formally proposed as the type species of the genus to replace P. biforata; the latter is considered to be a nomen dubium. In our revised diagnosis, Platystrophia is restricted to a group of Arenig to upper Caradoc species from Baltica and Avalonia, whereas the Ashgill and lower Silurian taxa of these regions, hitherto assigned to Platystrophia, are placed in the new genus Neoplatystrophia. Platystrophia ponderosa Foerste, 1909 from the Upper Ordovician of North America is proposed as the type species of a new genus Vinlandostrophia. Two new species, Platystrophia baltica and Platystrophia pogrebovi from the Llanvirn–Caradoc of the East Baltic are also described.

  1. An updated checklist of mosquito species (Diptera: Culicidae) from Madagascar

    Science.gov (United States)

    Tantely, Michaël Luciano; Le Goff, Gilbert; Boyer, Sébastien; Fontenille, Didier

    2016-01-01

    An updated checklist of 235 mosquito species from Madagascar is presented. The number of species has increased considerably compared to previous checklists, particularly the last published in 2003 (178 species). This annotated checklist provides concise information on endemism, taxonomic position, developmental stages, larval habitats, distribution, behavior, and vector-borne diseases potentially transmitted. The 235 species belong to 14 genera: Aedeomyia (3 species), Aedes (35 species), Anopheles (26 species), Coquillettidia (3 species), Culex (at least 50 species), Eretmapodites (4 species), Ficalbia (2 species), Hodgesia (at least one species), Lutzia (one species), Mansonia (2 species), Mimomyia (22 species), Orthopodomyia (8 species), Toxorhynchites (6 species), and Uranotaenia (73 species). Due to non-deciphered species complexes, several species remain undescribed. The main remarkable characteristic of Malagasy mosquito fauna is the high biodiversity with 138 endemic species (59%). Presence and abundance of species, and their association, in a given location could be a bio-indicator of environmental particularities such as urban, rural, forested, deforested, and mountainous habitats. Finally, taking into account that Malagasy culicidian fauna includes 64 species (27%) with a known medical or veterinary interest in the world, knowledge of their biology and host preference summarized in this paper improves understanding of their involvement in pathogen transmission in Madagascar. PMID:27101839

  2. An updated checklist of mosquito species (Diptera: Culicidae from Madagascar

    Directory of Open Access Journals (Sweden)

    Tantely Michaël Luciano

    2016-01-01

    Full Text Available An updated checklist of 235 mosquito species from Madagascar is presented. The number of species has increased considerably compared to previous checklists, particularly the last published in 2003 (178 species. This annotated checklist provides concise information on endemism, taxonomic position, developmental stages, larval habitats, distribution, behavior, and vector-borne diseases potentially transmitted. The 235 species belong to 14 genera: Aedeomyia (3 species, Aedes (35 species, Anopheles (26 species, Coquillettidia (3 species, Culex (at least 50 species, Eretmapodites (4 species, Ficalbia (2 species, Hodgesia (at least one species, Lutzia (one species, Mansonia (2 species, Mimomyia (22 species, Orthopodomyia (8 species, Toxorhynchites (6 species, and Uranotaenia (73 species. Due to non-deciphered species complexes, several species remain undescribed. The main remarkable characteristic of Malagasy mosquito fauna is the high biodiversity with 138 endemic species (59%. Presence and abundance of species, and their association, in a given location could be a bio-indicator of environmental particularities such as urban, rural, forested, deforested, and mountainous habitats. Finally, taking into account that Malagasy culicidian fauna includes 64 species (27% with a known medical or veterinary interest in the world, knowledge of their biology and host preference summarized in this paper improves understanding of their involvement in pathogen transmission in Madagascar.

  3. Phylogenetic analysis of the spider mite sub-family Tetranychinae (Acari: Tetranychidae based on the mitochondrial COI gene and the 18S and the 5' end of the 28S rRNA genes indicates that several genera are polyphyletic.

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    Tomoko Matsuda

    Full Text Available The spider mite sub-family Tetranychinae includes many agricultural pests. The internal transcribed spacer (ITS region of nuclear ribosomal RNA genes and the cytochrome c oxidase subunit I (COI gene of mitochondrial DNA have been used for species identification and phylogenetic reconstruction within the sub-family Tetranychinae, although they have not always been successful. The 18S and 28S rRNA genes should be more suitable for resolving higher levels of phylogeny, such as tribes or genera of Tetranychinae because these genes evolve more slowly and are made up of conserved regions and divergent domains. Therefore, we used both the 18S (1,825-1,901 bp and 28S (the 5' end of 646-743 bp rRNA genes to infer phylogenetic relationships within the sub-family Tetranychinae with a focus on the tribe Tetranychini. Then, we compared the phylogenetic tree of the 18S and 28S genes with that of the mitochondrial COI gene (618 bp. As observed in previous studies, our phylogeny based on the COI gene was not resolved because of the low bootstrap values for most nodes of the tree. On the other hand, our phylogenetic tree of the 18S and 28S genes revealed several well-supported clades within the sub-family Tetranychinae. The 18S and 28S phylogenetic trees suggest that the tribes Bryobiini, Petrobiini and Eurytetranychini are monophyletic and that the tribe Tetranychini is polyphyletic. At the genus level, six genera for which more than two species were sampled appear to be monophyletic, while four genera (Oligonychus, Tetranychus, Schizotetranychus and Eotetranychus appear to be polyphyletic. The topology presented here does not fully agree with the current morphology-based taxonomy, so that the diagnostic morphological characters of Tetranychinae need to be reconsidered.

  4. Taxonomic notes on the crab spider genera Stephanopoides and Isaloides (Araneae: Thomisidae: Stephanopinae).

    Science.gov (United States)

    Teixeira, Renato Augusto; Barros, Bruno Augusto Reis

    2015-05-08

    According to current catalogues, two species are allocated to the genus Parastephanops F. O. Pickard-Cambridge, 1900. The examination of the type of Parastephanops cognatus (O. Pickard-Cambridge, 1892) (type-species of Parastephanops) has revealed the presence of a high cephalic region, legs with dark metatarsus and apex of tibia, and triangular epigynum with median ridge, all diagnostic features of Stephanopoides Keyserling, 1880. However, the female of P. echinatus (Banks, 1914) has a low cephalic region, a median ocular quadrangle longer than wide and a large atrium of the epigynum, which are diagnostic features of Isaloides F. O. Pickard-Cambridge, 1900. Thus, Parastephanops is synonymized with Stephanopoides and its two species, P. cognatus and P. echinatus, are redescribed, illustrated and assigned to Stephanopoides and Isaloides, respectively. We also propose that Pyresthesis berlandi Caporiacco, 1947 is a junior synonym of Stephanopoides simoni Keyserling, 1880 based on shape and arrangement of the epigynal plate, copulatory ducts and spermathecae.

  5. Emended description of the family Chromatiaceae, phylogenetic analyses of the genera Alishewanella, Rheinheimera and Arsukibacterium, transfer of Rheinheimera longhuensis LH2-2T to the genus Alishewanella and description of Alishewanella alkalitolerans sp. nov. from Lonar Lake, India.

    Science.gov (United States)

    Sisinthy, Shivaji; Chakraborty, Dwaipayan; Adicherla, Harikrishna; Gundlapally, Sathyanarayana Reddy

    2017-09-01

    Phylogenetic analyses were performed for members of the family Chromatiaceae, signature nucleotides deduced and the genus Alishewanella transferred to Chromatiaceae. Phylogenetic analyses were executed for the genera Alishewanella, Arsukibacterium and Rheinheimera and the genus Rheinheimera is proposed to be split, with the creation of the Pararheinheimera gen. nov. Furthermore, the species Rheinheimera longhuensis, is transferred to the genus Alishewanella as Alishewanella longhuensis comb. nov. Besides, the genera Alishewanella and Rheinheimera are also emended. Strain LNK-7.1 T was isolated from a water sample from the Lonar Lake, India. Cells were Gram-negative, motile rods, positive for catalase, oxidase, phosphatase, contained C 16:0 , C 17:1 ω8c, summed feature3 (C 16:1 ω6c and/or C 16:1 ω7c) and summed feature 8 (C 18:1 ω7c) as major fatty acids, PE and PG as the major lipids and Q-8 as the sole respiratory quinone. Phylogenetic analyses using NJ, ME, ML and Maximum parsimony, based on 16S rRNA gene sequences, identified Alishewanella tabrizica RCRI4 T as the closely related species of strain LNK-7.1 T with a 16S rRNA gene sequence similarity of 98.13%. The DNA-DNA similarity between LNK-7.1 T and the closely related species (A. tabrizica) was only 12.0% and, therefore, strain LNK-7.1 T was identified as a novel species of the genus Alishewanella with the proposed name Alishewanella alkalitolerans sp. nov. In addition phenotypic characteristics confirmed the species status to strain LNK-7.1 T . The type strain of A. alkalitolerans is LNK-7.1 T (LMG 29592 T  = KCTC 52279 T ), isolated from a water sample collected from the Lonar lake, India.

  6. A survey of Euphorinae (Hymenoptera: Braconidae) of southern Iran, with description of a new species.

    Science.gov (United States)

    Ameri, Ali; Talebi, Ali Asghar; Rakhshani, Ehsan; Beyarslan, Ahmet; Kamali, Karim

    2014-12-23

    A faunistic survey of Euphorinae (Hym., Braconidae) in southern Iran, as well as an updated checklist of the genera and species in Iran, are presented. Sampling was performed using Malaise traps at different locations of Hormozgan province and Qeshm Island in Persian Gulf during 2011-2013. In total, 38 species belonging to 10 genera are listed from Iran. The recorded species belong to the following genera: Allurus Forster, 1862 (two species), Chrysopophthorus Goidanich 1948 (one species), Dinocampus Forster, 1862 (one species), Ecclitura Kokujev, 1902 (one species), Leiophron Nees von Esenbeck, 1819 (10 species), Meteorus Haliday, 1835 (12 species), Perilitus Nees von Esenbeck, 1819 (five species), Syntretus Forster 1862 (three species), Wesmaelia Foerster, 1862 (one species) and Zele Curtis, 1832 (two species). Allurus lituratus (Haliday 1835), Dinocampus coccinellae (Schrank, 1802), Leiophron (Peristenus) grandiceps (Thomson 1892), Meteorus rubens (Nees, 1811) and Wesmaelia petiolata (Wollaston, 1858) are new records for Hormozgan province and Leiophron (Peristenus) grandiceps (Thomson 1892) is recorded for the first time from Iran. In addition, Meteorus breviterebratus Ameri, Talebi & Beyarslan sp. n. is newly described and illustrated. 

  7. Trees of Laos and Vietnam: a field guide to 100 economically or ecologically important species

    NARCIS (Netherlands)

    Sam, Hoang Van; Nanthavong, Khamseng; Keßler, P.J.A.

    2004-01-01

    This field guide to 100 economically or ecologically important tree species from Laos and Vietnam enables the user to identify the included taxa with user-friendly keys. It includes scientific names, botanical descriptions of families, genera, and species. Specific information on distribution,

  8. Wild Plant Species with Extremely Small Populations Require Conservation and Reintroduction in China

    Science.gov (United States)

    Hai Ren; Qianmei Zhang; Hongfang Lu; Hongxiao Liu; Qinfeng Guo; Jun Wang; Shuguang Jian; Hai’ou Bao

    2012-01-01

    China is exceptionally rich in biodiversity, with more than 30000 vascular plant species that include many endemic genera, species of ancient origin, and cultivated plants (Yang et al. 2005). Because of rapid economic development, population growth, pollution, and continuing resource exploitation, China’s plant diversity faces severe threats. According to the Chinese...

  9. Three new species of Anacroneuria Klapálek (Plecoptera: Perlidae) from Panama.

    Science.gov (United States)

    Gutiérrez-Fonseca, Pablo E

    2015-05-13

    In Central America, the Plecoptera is represented by the genera Anacroneuria and Perlesta, both from the Perlidae family. A total of 45 species have been reported for the region, of which 16 have been found in Panama, all of the genus Anacroneuria. Three new species for Panama are described in this study: Anacroneuria darien, A. embera, and A. laru.

  10. Novel Paraconiothyrium species on stone fruit trees and other woody hosts

    NARCIS (Netherlands)

    Damm, U; Verkley, G J M; Crous, P W; Fourie, P H; Haegi, A; Riccioni, L

    Coniothyrium-like fungi are common wood and soil inhabitants and hyperparasites on other fungi. They belong to different fungal genera within the Pleosporales. Several isolates were obtained on wood of different Prunus species (plum, peach and nectarine) from South Africa, on Actinidia species from

  11. Coexistence and succession of copepod species in the Mandovi and Zuari estuaries, Goa

    Digital Repository Service at National Institute of Oceanography (India)

    Goswami, S.C.

    Observations were made on the copepod species association and succession at six stations in the Mandovi-Zuari estuarine system of Goa, India. A total of 55 species belonging to 25 genera and 18 families were encountered in the surface collections...

  12. Equations relating compacted and uncompacted live crown ratio for common tree species in the South

    Science.gov (United States)

    KaDonna C. Randolph

    2010-01-01

    Species-specific equations to predict uncompacted crown ratio (UNCR) from compacted live crown ratio (CCR), tree length, and stem diameter were developed for 24 species and 12 genera in the southern United States. Using data from the US Forest Service Forest Inventory and Analysis program, nonlinear regression was used to model UNCR with a logistic function. Model...

  13. Trees of Laos and Vietnam: a field guide to 100 economically or ecologically important species

    OpenAIRE

    Sam, Hoang Van; Nanthavong, Khamseng; Keßler, P.J.A.

    2004-01-01

    This field guide to 100 economically or ecologically important tree species from Laos and Vietnam enables the user to identify the included taxa with user-friendly keys. It includes scientific names, botanical descriptions of families, genera, and species. Specific information on distribution, habitat, ecology, and uses has been compiled. All specimens examined have been listed.

  14. Rapid and reliable discrimination between Shigella species and Escherichia coli using MALDI-TOF mass spectrometry

    NARCIS (Netherlands)

    Paauw, A.; Jonker, D.; Roeselers, G.; Heng, J.M.E.; Mars-Groenendijk, R.H.; Trip, H.; Molhoek, E.M.; Jansen, H.J.; Plas, J. van der; Jong, A.L. de; Majchrzykiewicz-Koehorst, J.A.; Speksnijder, A.G.C.L.

    2015-01-01

    E. coli-. Shigella species are a cryptic group of bacteria in which the Shigella species are distributed within the phylogenetic tree of E. coli. The nomenclature is historically based and the discrimination of these genera developed as a result of the epidemiological need to identify the cause of

  15. New combinations for two coronate polyp species (Atorellidae and Nausithoidae, Coronatae, Scyphozoa, Cnidaria)

    NARCIS (Netherlands)

    Morandini, A.C.; Jarms, G.

    2005-01-01

    Within the order Coronatae, six valid species remain known only by their polyp stage. The inability to relate them to any medusae genera of the group is a problem that remains to be solved in the order. With the examination of type specimens, we reassign the species Stephanoscyphistoma sibogae and

  16. Species diversity of vascular plants in Si Phang-nga National Park, Phangnga Province

    Directory of Open Access Journals (Sweden)

    Leeratiwong, C.

    2005-07-01

    Full Text Available A survey of the vascular plants in Si Phang-nga National Park, Phangnga Province, was conducted from September 2002 to August 2003. Five hundred and forty three species of 287 genera and 111 families were collected. The most diverse family was Rubiaceae, 53 species. Four species of these collected plants are endemic to Thailand, Argostemma lobulatum, Aristolochia helix, Crinum thaianum and Mallotus hymenophyllus and three species, Hedyotis hedyotidea, Lipocarpha microcephala and Pterolobium intergum are newly recorded for southern Thailand.

  17. Pictorial identification key for species of Sarcophagidae (Diptera of potential forensic importance in southern Brazil

    Directory of Open Access Journals (Sweden)

    Karine Pinto e Vairo

    2011-09-01

    Full Text Available Pictorial identification key for species of Sarcophagidae (Diptera of potential forensic importance in southern Brazil. Species of the subfamily Sarcophaginae are important to forensic entomology due to their necrophagous habits. This contribution presents a pictorial key for the identification of 22 Sarcophaginae species in 10 genera that are commonly found in southern Brazil. Photographs of the main structures used in species identification, mainly from the male terminalia, are provided.

  18. Revision of the genus Parzaommomyia Girault (Hymenoptera: Eulophidae), with taxonomic notes on related genera

    NARCIS (Netherlands)

    Gumovsky, A.; Ubaidillah, R.

    2002-01-01

    The eulophid genus Parzaommomyia Girault, 1915, is revised and redefined. Five new species are described and illustrated: P. sulensis spec. nov. from Sulawesi and West Malaysia, P. africana spec. nov. from Nigeria, P. crassicornis spec. nov. from Sulawesi, New Guinea and China, P. achterbergi spec.

  19. Phylogeny and DNA-based identification in Phoma and related genera

    NARCIS (Netherlands)

    Aveskamp, M.M.

    2014-01-01

    This thesis treats the taxonomy of a generic complex presently known as PhomaSacc. emend Boerema & Bollen. This group of fungi comprises more than 200 taxa at species or variety level that are characterised by the production of hyaline, non-septate conidial spores in pycnidial conidiomata. The

  20. Disparate relatives: Life histories vary more in genera occupying intermediate environments

    NARCIS (Netherlands)

    Hermant, M.; Hennion, F.; Bartish, I.V.; Yguel, B.; Prinzing, A.

    2012-01-01

    Species within clades are commonly assumed to share similar life history traits, but within a given region some clades show much greater variability in traits than others. Are variable clades older, allowing more time for trait diversification? Or do they occupy particular environments, providing a

  1. Study on the Pauropoda from Tibet, China. Part I. The genera Decapauropus and Hemipauropus (Myriapoda

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    Chang-Yuan Qian

    2018-04-01

    Full Text Available Three new species of family Pauropodidae: Decapauropus biconjugarus Qian & Bu, sp. n., D. tibeticus Qian & Bu, sp. n. and Hemipauropus quadrangulus Qian & Bu, sp. n. are described and illustrated from southeastern Tibet, China. The genus Hemipauropus is recorded for the first time from China. This is the second report of pauropods from Tibet.

  2. Floristic summary of plant species in the air pollution literature.

    Science.gov (United States)

    Bennett, J P

    1996-01-01

    A floristic summary and analysis was performed on a list of the plant species that have been studied for the effects of gaseous and chemical air pollutants on vegetation in order to compare the species with the flora of North America north of Mexico. The scientific names of 2081 vascular plant species were extracted from almost 4000 journal articles stored in two large literature databases on the effects of air pollutants on plants. Three quarters of the plant species studied occur in North America, but this was only 7% of the total North American flora. Sixteen percent and 56% of all North American genera and families have been studied. The most studied genus is Pinus with 70% of the North American species studied, and the most studied family is the grass family, with 12% of the species studied. Although Pinus is ranked 86th in the North American flora, the grass family is ranked third, indicating that representation at the family level is better than at the genus level. All of the top ten families in North America are represented in the top 20 families in the air pollution effects literature, but only one genus (Lupinus) in the top ten genera in North America is represented in the top thirteen genera in the air pollution literature.

  3. Revisão dos gêneros Prionolopha e Securigera (Orthoptera, Romaleidae, Romaleinae Revision of the genera Prionolopha and Securigera (Orthoptera, Romaleidae, Romaleinae

    Directory of Open Access Journals (Sweden)

    Sidney Moraes de Vasconcellos

    Full Text Available Realizamos a revisão dos gêneros Prionolopha Stål, 1873 e Securigera Bolívar, 1909, baseada no exame da morfologia externa de machos e fêmeas, espermateca e complexo fálico. Consideramos Prionolopha daguerrei Liebermann, 1935 e P. evoneoi Piza, 1981 sinônimos de P. serrata (Linnaeus, 1758. Transferimos Alcamenes cristatus Bruner, 1906 para o gênero Securigera Bolívar, 1909. Incluímos figuras de cada espécie e o mapa de distribuição geográfica.A revision of the genera Prionolopha Stål, 1873 and Securigera Bolívar, 1909 based on the examination of the external morphology of male and female and the spermathecae and phallic complex is given. Prionolopha daguerrei Liebermann, 1935 and P. evoneoi Piza, 1981 are considered synonyms of P. serrata (Linnaeus, 1758. Alcamenes cristatus Bruner, 1906 is transfered to genus Securigera Bolívar, 1909. Illustrations of each species and a map of the geographical distribution are also included.

  4. Some spiders (Araneae new to the Hungarian fauna, including three genera and one famil

    Directory of Open Access Journals (Sweden)

    Pfliegler, W.

    2012-12-01

    Full Text Available We report the occurrence of new species of spiders to Hungary: Acantholycosa lignaria (Clerck, 1758, Episinus maculipes Cavanna, 1876, Oecobius maculatus Simon, 1870 and Pandava laminata (Thorell, 1878. We also report Clubiona neglecta O. P.-Cambridge, 1862 (previously only mentioned in a table in a Hungarian-language dissertation. The genus Acantholycosa (Dahl, 1908 was hitherto unknown in Hungary, yet expected to occur. The family Oecobiidae Blackwall, 1862 is new to the Hungarian fauna. The Southeast-Asian neozoon Pandava laminata is also recorded as new to Hungary. All further species found to be new to the Hungarian fauna or described in Hungary after the most recent publication of a Hungarian spider checklist are briefly mentioned.

  5. Rapid and recent world-wide diversification of bluegrasses (Poa, Poaceae and related genera.

    Directory of Open Access Journals (Sweden)

    Matthias H Hoffmann

    Full Text Available Rapid species diversifications provide fascinating insight into the development of biodiversity in time and space. Most biological radiations studied to date, for example that of cichlid fishes or Andean lupines, are confined to isolated geographical areas like lakes, islands or island-like regions. Using DNA sequence data of the ribosomal internal transcribed spacer (ITS for many species of the Poa alliance, a group comprising about 775 C3 grass species, revealed rapid and parallel diversifications in various parts of the world. Some of these radiations are restricted to isolated areas like the Andes, whereas others are typical of the lowlands of mainly the northern hemisphere. These radiations thus are not restricted to island-like areas and are seemingly actively ongoing. The ages of the diversifying clades are estimated to be 2.5-0.23 million years (Myr. Conservative diversification rates in the Poa alliance amount to 0.89-3.14 species per Myr, thus are in the order of, or even exceeding, other instances of well-known radiations. The grass radiations of the mainly cold-adapted Poa alliance coincide with the Late Tertiary global cooling, which resulted in the retreat of forests and the subsequent formation of cold-adapted grasslands especially in the northern, but also in parts of the southern hemisphere. The cold tolerance, suggested to be one of the ecological key innovations, may have been acquired during the early diversification of the subfamily Pooideae, but became significant millions of years later during the Pliocene/Pleistocene radiation of the Poa alliance.

  6. Agaritine content of 53 Agaricus species collected from nature

    DEFF Research Database (Denmark)

    Schulzova, V.; Hajslova, J.; Peroutka, R.

    2009-01-01

    carcinogen. There was a huge variation in agaritine content between species, but less variation between samples of a species. Whereas the cultivated mushroom Agaricus bisporus commonly contain 200-500 mg agaritine kg-1 fresh weight, no less than 24 of the 53 species contained agaritine levels above 1000 mg...... strain development of Agaricus mushrooms for cultivation. No correlation could be observed between agaritine content and size of the mushroom, week of the year when collected, year of collection, or site of collection. Besides occurring in the genus Agaricus, some species of the genera Leucoagaricus...

  7. Do ectomycorrhizal and arbuscular mycorrhizal temperate tree species systematically differ in root order-related fine root morphology and biomass?

    OpenAIRE

    Kubisch, Petra; Hertel, Dietrich; Leuschner, Christoph

    2015-01-01

    While most temperate broad-leaved tree species form ectomycorrhizal (EM) symbioses, a few species have arbuscular mycorrhizas (AM). It is not known whether EM and AM tree species differ systematically with respect to fine root morphology, fine root system size and root functioning. In a species-rich temperate mixed forest, we studied the fine root morphology and biomass of three EM and three AM tree species from the genera Acer, Carpinus, Fagus, Fraxinus, and Tilia searching for principal dif...

  8. Phytoplankton species composition of four ecological provinces in Yellow Sea, China

    Science.gov (United States)

    Li, Xiaoqian; Feng, Yuanyuan; Leng, Xiaoyun; Liu, Haijiao; Sun, Jun

    2017-12-01

    The ecological province based on phytoplankton species composition is important to understanding the interplay between environmental parameters and phytoplankton species composition. The aim of this study was to establish phytoplankton species composition ecological pattern thus elucidate the relationship between environmental factors and the phytoplankton species composition in the ecological provinces. Phytoplankton samples were collected from 31 stations in Yellow Sea (121.00°-125.00°E, 32.00°-39.22°N) in November 2014. The samples were enumerated and identified with the Utermöhl method under an optical inverted microscope-AE2000 with magnifications of 200 × or 400 ×. In the present study, a total of 141 taxa belonging to 60 genera of 4 phyla of phytoplankton were identified, among them 101 species of 45 genera were Bacillariophyta, 36 species of 11 genera were Dinophyta, 3 species of 3 genera were Chrysophyta and 1 species of 1 genera was Chlorophyta. The study area was divided into 4 ecological provinces according to an unsupervised cluster algorithm applied to the phytoplankton biomass. A T-S (Temperature-Salinity) scatter diagram depicted with data of water temperature and salinity defined by environmental provinces matched well with the ecological provinces. The results of Canonical Correspondence Analysis (CCA) indicated that the phytoplankton species composition was mainly correlated with temperature, salinity and silicate concentration in the studied area. A method of establishing ecological provinces is useful to further understanding the environmental effects on the marine phytoplankton species composition and the consequent marine biogeochemistry.

  9. Species of leafy liverworts in protected forest of simancik 1, regency of deli serdang, north sumatera

    Science.gov (United States)

    Pasaribu, Nursahara; Sartina Siregar, Etti; Rahmi, Wardatur

    2018-03-01

    Data and information of leafy liverworts diversity in Sumatera, especially North Sumatera, are still less reported. Research is conducted in order to invent and describe the morphological character of leafy liverworts in Protected Forest of Simancik I, regency of Deli Serdang, North Sumatera. Samples were collected along the hiking tracks of study site. Twenty two spesies belonging to 12 genera and 6 families were found. They were only one species of Frullaniaceae, eleven species of Lejeuneaceae, two species of Lepidoziaceae, two species of Lophocoleaceae, four species of Plagiochilaceae and two species of Radulaceae. Those species were found as epiphyte on the tree truck and some on the decaying wood. The highest diversity of leafy liverworts was from Lejeuneaceae which consisted of two subfamilies: Lejeuneoideaea and Ptychanthoideae and seven genera which are Lejeunea, Archilejeunea, Lopholejeunea, Dendrolejeunea, Ptychantus, Mastigolejeunea and Thysananthus while the lowest diversity was from Frullaniaceae.

  10. Cecembia lonarensis gen. nov., sp. nov., a haloalkalitolerant bacterium of the family Cyclobacteriaceae, isolated from a haloalkaline lake and emended descriptions of the genera Indibacter, Nitritalea and Belliella.

    Science.gov (United States)

    Anil Kumar, P; Srinivas, T N R; Madhu, S; Sravan, R; Singh, Shashi; Naqvi, S W A; Mayilraj, S; Shivaji, S

    2012-09-01

    A novel Gram-staining-negative, rod-shaped, non-motile bacterium, designated strain LW9(T), was isolated from a water sample collected from Lonar Lake of Buldhana district, Maharashtra, India. Colonies and broth cultures were reddish orange due to the presence of carotenoid pigments. Strain LW9(T) was positive for catalase, ornithine decarboxylase and lysine decarboxylase activities and negative for gelatinase, oxidase, urease and lipase activities. The predominant fatty acids were iso-C(15 : 0) (31.3 %), iso-C(16 : 0) (9.3 %), anteiso-C(15 : 0) (7.3 %), iso-C(16 : 1) H (6.1 %), summed feature 3 (comprising C(16 : 1)ω7c/C(16 : 1)ω6c; 5.9 %), iso-C(17 : 1)ω9c (5.4 %) and iso-C(17 : 0) 3-OH (5.0 %). Strain LW9(T) contained MK-7 as the major respiratory quinone. The polar lipids consisted of phosphatidylethanolamine, two unidentified aminolipids and seven unidentified lipids. The DNA G+C content of strain LW9(T) was 40.5 mol%. 16S rRNA gene sequence analysis indicated that the type strains of Indibacter alkaliphilus and Aquiflexum balticum, two members of the family Cyclobacteriaceae (phylum 'Bacteroidetes') were the most closely related strains with sequence similarities of 93.0 and 94.0 %, respectively. Other members of the family Cyclobacteriaceae showed sequence similarities <93.0 %. Based on these phenotypic characteristics and on phylogenetic inference, strain LW9(T) is proposed as the representative of novel species in a new genus, Cecembia lonarensis gen. nov., sp. nov. The type strain of the type species, Cecembia lonarensis, is LW9(T) (= CCUG 58316(T) = KCTC 22772(T)). Emended descriptions of the genera Indibacter, Nitritalea and Belliella are also proposed.

  11. Taxonomic synopsis and analytical key for the genera of Solanaceae from Rio Grande do Sul, Brazil Sinopse taxonômica e chave ilustrada dos gêneros de Solanaceae ocorrentes no Rio Grande do Sul, Brasil

    Directory of Open Access Journals (Sweden)

    Edson Luís de Carvalho Soares

    2011-06-01

    Full Text Available This work consists of a taxonomic synopsis of the genera of Solanaceae in Rio Grande do Sul state, Brazil. Solanaceae is represented by 28 genera in this state: Acnistus Schott, Athenaea Sendtn., Aureliana Sendtn., Bouchetia Dunal, Browalia L., Brugmansia Pers., Brunfelsia L., Calibrachoa La Llave & Lex., Capsicum L., Cestrum L., Datura L., Dyssochroma Miers, Grabowskia Schltdl., Jaborosa Juss., Lycianthes (Dunal Hassl., Melananthus Walp., Nicandra Adans., Nicotiana L., Nierembergia Ruiz & Pav., Petunia Juss., Physalis L., Salpichroa Miers, Schwenckia L., Sessea Ruiz & Pav., Solandra Sw., Solanum L. (including Cyphomandra Sendtn. and Lycopersicon Mill., Streptosolen Miers and Vassobia Rusby. Of these, 23 consist of native species , while five are represented exclusively by introduced species. The total number of species is 149, of which 118 are native and 31 are introduced (adventitious or cultivated. An identification key for genera, and also comments on the most relevant taxonomic characters of each one are presented, plus comments on the species that occur in Rio Grande do Sul state.Este trabalho consiste em uma sinopse taxonômica dos gêneros de Solanaceae no Estado do Rio Grande do Sul, Brasil. Constatou-se a ocorrência de 28 gêneros: Acnistus Schott, Athenaea Sendtn., Aureliana Sendtn., Bouchetia Dunal, Browalia L., Brugmansia Pers., Brunfelsia L., Calibrachoa La Llave & Lex., Capsicum L., Cestrum L., Datura L., Dyssochroma Miers, Grabowskia Schltdl., Jaborosa Juss., Lycianthes (Dunal Hassl., Melananthus Walp., Nicandra Adans., Nicotiana L., Nierembergia Ruiz & Pav., Petunia Juss., Physalis L., Salpichroa Miers, Schwenckia L., Sessea Ruiz & Pav., Solandra Sw., Solanum L. (incluindo Cyphomandra Sendtn. e Lycopersicon Mill., Streptosolen Miers e Vassobia Rusby. Destes, 23 apresentam espécies nativas, enquanto cinco estão representados exclusivamente por espécies introduzidas. O número total de espécies é de 149, sendo que 118 s

  12. Association between large strongyle genera in larval cultures--using rare-event poisson regression.

    Science.gov (United States)

    Cao, X; Vidyashankar, A N; Nielsen, M K

    2013-09-01

    Decades of intensive anthelmintic treatment has caused equine large strongyles to become quite rare, while the cyathostomins have developed resistance to several drug classes. The larval culture has been associated with low to moderate negative predictive values for detecting Strongylus vulgaris infection. It is unknown whether detection of other large strongyle species can be statistically associated with presence of S. vulgaris. This remains a statistical challenge because of the rare occurrence of large strongyle species. This study used a modified Poisson regression to analyse a dataset for associations between S. vulgaris infection and simultaneous occurrence of Strongylus edentatus and Triodontophorus spp. In 663 horses on 42 Danish farms, the individual prevalences of S. vulgaris, S. edentatus and Triodontophorus spp. were 12%, 3% and 12%, respectively. Both S. edentatus and Triodontophorus spp. were significantly associated with S. vulgaris infection with relative risks above 1. Further, S. edentatus was associated with use of selective therapy on the farms, as well as negatively associated with anthelmintic treatment carried out within 6 months prior to the study. The findings illustrate that occurrence of S. vulgaris in larval cultures can be interpreted as indicative of other large strongyles being likely to be present.

  13. Change is good: variations in common biological mechanisms in the epsilonproteobacterial genera Campylobacter and Helicobacter.

    Science.gov (United States)

    Gilbreath, Jeremy J; Cody, William L; Merrell, D Scott; Hendrixson, David R

    2011-03-01

    Microbial evolution and subsequent species diversification enable bacterial organisms to perform common biological processes by a variety of means. The epsilonproteobacteria are a diverse class of prokaryotes that thrive in diverse habitats. Many of these environmental niches are labeled as extreme, whereas other niches include various sites within human, animal, and insect hosts. Some epsilonproteobacteria, such as Campylobacter jejuni and Helicobacter pylori, are common pathogens of humans that inhabit specific regions of the gastrointestinal tract. As such, the biological processes of pathogenic Campylobacter and Helicobacter spp. are often modeled after those of common enteric pathogens such as Salmonella spp. and Escherichia coli. While many exquisite biological mechanisms involving biochemical processes, genetic regulatory pathways, and pathogenesis of disease have been elucidated from studies of Salmonella spp. and E. coli, these paradigms often do not apply to the same processes in the epsilonproteobacteria. Instead, these bacteria often display extensive variation in common biological mechanisms relative to those of other prototypical bacteria. In this review, five biological processes of commonly studied model bacterial species are compared to those of the epsilonproteobacteria C. jejuni and H. pylori. Distinct differences in the processes of flagellar biosynthesis, DNA uptake and recombination, iron homeostasis, interaction with epithelial cells, and protein glycosylation are highlighted. Collectively, these studies support a broader view of the vast repertoire of biological mechanisms employed by bacteria and suggest that future studies of the epsilonproteobacteria will continue to provide novel and interesting information regarding prokaryotic cellular biology.

  14. Four new species of frogs and one new species of snake from the Chapare region of Bolivia, with notes on other species

    Science.gov (United States)

    Reynolds, R.P.; Foster, M.S.

    1992-01-01

    We report on a collection of 74 frogs, 11 lots of frog eggs or tadpoles, and two snakes collected from the Chapare Region in the yungas of the eastern Andean Cordillera de Cochabamba, Bolivia. Collecting localities range from approximately 300 m to >3200 m in elevation. The specimens pertain to 23 species, probably 10 of which are undescribed. We describe four new species of frogs, one each in the genera Bufo, Centrolenella, Colostethus, and Hyla, and one new species of snake, genus Dipsas. We place Atelopus rugulosus in synonymy with A. tricolor.

  15. Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)

    Science.gov (United States)

    Allen, Julie M.; Koga, Ryuichi; Fukatsu, Takema; Sweet, Andrew D.; Johnson, Kevin P.; Reed, David L.

    2016-01-01

    ABSTRACT Roughly 10% to 15% of insect species host heritable symbiotic bacteria known as endosymbionts. The lice parasitizing mammals rely on endosymbionts to provide essential vitamins absent in their blood meals. Here, we describe two bacterial associates from a louse, Proechinophthirus fluctus, which is an obligate ectoparasite of a marine mammal. One of these is a heritable endosymbiont that is not closely related to endosymbionts of other mammalian lice. Rather, it is more closely related to endosymbionts of the genus Sodalis associated with spittlebugs and feather-chewing bird lice. Localization and vertical transmission of this endosymbiont are also more similar to those of bird lice than to those of other mammalian lice. The endosymbiont genome appears to be degrading in symbiosis; however, it is considerably larger than the genomes of other mammalian louse endosymbionts. These patterns suggest the possibility that this Sodalis endosymbiont might be recently acquired, replacing a now-extinct, ancient endosymbiont. From the same lice, we also identified an abundant bacterium belonging to the genus Rickettsia that is closely related to Rickettsia ricketsii, a human pathogen vectored by ticks. No obvious masses of the Rickettsia bacterium were observed in louse tissues, nor did we find any evidence of vertical transmission, so the nature of its association remains unclear. IMPORTANCE Many insects are host to heritable symbiotic bacteria. These heritable bacteria have been identified from numerous species of parasitic lice. It appears that novel symbioses have formed between lice and bacteria many times, with new bacterial symbionts potentially replacing existing ones. However, little was known about the symbionts of lice parasitizing marine mammals. Here, we identified a heritable bacterial symbiont in lice parasitizing northern fur seals. This bacterial symbiont appears to have been recently acquired by the lice. The findings reported here provide insights

  16. Phylogeny and origin of 82 zygomycetes from all 54 genera of the Mucorales and Mortierellales based on combined analysis of actin and translation elongation factor EF-1alpha genes.

    Science.gov (United States)

    Voigt, K; Wöstemeyer, J

    2001-05-30

    True fungi (Eumycota) are heterotrophic eukaryotic microorganisms encompassing ascomycetes, basidiomycetes, chytridiomycetes and zygomycetes. The natural systematics of the latter group, Zygomycota, are very poorly understood due to the lack of distinguishing morphological characters. We have determined sequences for the nuclear-encoded genes actin (act) from 82 zygomycetes representing all 54 currently recognized genera from the two zygomycetous orders Mucorales and Mortierellales. We also determined sequences for translation elongation factor EF-1alpha (tef) from 16 zygomycetes (total of 96,837 bp). Phylogenetic analysis in the context of available sequence data (total 2,062 nucleotide positions per species) revealed that current classification schemes for the mucoralean fungi are highly unnatural at the family and, to a large extent, at the genus level. The data clearly indicate a deep, ancient and distinct dichotomy of the orders Mucorales and Mortierellales, which are recognized only in some zygomycete systems. Yet at the same time the data show that two genera - Umbelopsis and Micromucor - previously placed within the Mortierellales on the basis of their weakly developed columella (a morphological structure of the sporangiophore well-developed within all Mucorales) are in fact members of the Mucorales. Phylogenetic analyses of the encoded amino acid sequences in the context of homologues from eukaryotes and archaebacterial outgroups indicate that the Eumycota studied here are a natural group but provide little or no support for the monophyly of either zygomycetes, ascomycetes or basidiomycetes. The data clearly indicate that a complete revision of zygomycete natural systematics is necessary.

  17. Halocin C8: an antimicrobial peptide distributed among four halophilic archaeal genera: Natrinema, Haloterrigena, Haloferax, and Halobacterium.

    Science.gov (United States)

    Besse, Alison; Vandervennet, Manon; Goulard, Christophe; Peduzzi, Jean; Isaac, Stéphanie; Rebuffat, Sylvie; Carré-Mlouka, Alyssa

    2017-05-01

    Halophilic archaea thrive in hypersaline ecosystems and produce antimicrobial peptides (AMPs) named halocins. AMPs are essential effectors of microbial interactions in natural ecosystems. Halocin C8 is a 7.4 kDa peptide produced by Natrinema sp. AS7092. Surrounded by genes involved in regulation and transport, the halC8 gene encodes a precursor, processed into the mature halocin and an immunity protein, protecting the producing strain against its halocin. This feature constitutes a unique property of halocin C8, as known AMPs and their immunity proteins are generally encoded on distinct ORFs in an operon. By complementary in silico and PCR-based approaches, the presence of halC8 in halophilic archaea collected from various parts of the world was evidenced. The full-length halC8 gene is restricted and consistently found in the genomes of strains belonging to the phylogenetically related genera Natrinema and Haloterrigena, along with transport and regulation genes. Functional expression of halC8 was demonstrated by RT-PCR and antimicrobial assays. Active halocin C8 was shown to contain five disulphide bridges, presumably conferring a compact structure resistant to harsh environmental conditions. In other archaeal genera, Haloferax and Halobacterium, genes encoding halocin C8 with diverging immunity protein moiety were evidenced. A phylogenetic analysis of halocin C8 sequences was conducted.

  18. Antimicrobial effect of bee collected pollen extract to Enterobacteriaceae genera after application of bee collected pollen in their feeding

    Directory of Open Access Journals (Sweden)

    Lukáš Hleba

    2013-10-01

    Full Text Available In this study we researched antimicrobial activity of bee pollen extracts to Enterobacteriaceae genera isolated from chicken intestinal tract after application of bee collected pollen in their feeding. We used well plate agar diffusion method for antimicrobial testing of bee pollen extract and disc diffusion method for antibiotic susceptibility testing of bacteria by EUCAST. Identification of bacteria was done by test kit Enterotest 24. We identified tree bacterial strains: E. coli, P. mirabilis and K. oxytoca. We determined that K. oxytoca was resistant to ampicillin only and others identified strain were sensitive to used antibiotics. Also we determined antimicrobial effect of bee pollen extract to all tested strains of Enterobacteriaceae genera which were isolated from intestinal tract of chicken after application of bee collected pollen extract in their feeding. From obtained results we could be conclude that bacteria isolated from chicken after application of bee pollen extract had more resistance to bee collected pollen extract in in vitro experiment as E. coli CCM 3988, which did not be in contact with bee pollen extract.

  19. REVIEW:Species diversity of indigenous fruits in Indonesia and its potential.

    Directory of Open Access Journals (Sweden)

    TAHAN UJI

    2007-04-01

    Full Text Available Indonesia is rich of species diversity of indigenous fruits. The results of study reported that there are 266 species of indigenous fruits encountered in Indonesia and 62 species of them are cultivated. Four genera of indigenous fruits are recommended to developed in Indonesia, i.e. Durio, Mangifera, Garcinia and Nephelium. This study also reported that duku (Lansium domesticum, salak (Salacca zalacca, buah merah (Pandanus conoideus, and matoa (Pometia pinnata have a good prospect also to be developed in Indonesia.

  20. A new species of Leptadenia (Apocynaceae) and two other new records from southwestern Saudi Arabia

    Science.gov (United States)

    Masrahi, Yahya S.

    2015-01-01

    Leptadenia jazanica Y. Masrahi from the province of Jazan, southwestern Saudi Arabia is described as a new species and illustrated. The species differs from the other known nearest species of the genus, Leptadenia pyrotechnica, by decumbent to scrambling habit of stems and persistent leaves. In the same province also two new records belonging to the genera Canavalia (Fabaceae) and Craterostigma (Scrophulariaceae) were collected; they were identified as Canavalia virosa (Roxb.) Wight & Arn. and Craterostigma plantagineum Hochst. PMID:26288569

  1. Thorium (IV) toxicity of green microalgae from Scenedesmus and Monoraphidium genera

    International Nuclear Information System (INIS)

    Queiroz, Juliana Cristina de

    2009-01-01

    The toxicity of thorium by two green microalgae species, Monoraphidium sp. and Scenedesmus sp was studied. During the toxicity tests, the microalgae cultures were inoculated in ASM-I culture medium in the presence and absence of thorium (cultures at pH 8.0 and 6.0 in the absence of thorium, - control - and at pH 6.0 for thorium concentrations ranging from 0.5 to 100.0 mg/L Th). Its effect was monitored by direct counting on Fuchs-Rosenthal chamber and with the help of software developed by the group during the experiments. The difference in pH value in the culture medium did not affect the growth of the microalgae, and pH 6.0 was chosen as a reference in order not to compromise solubility and speciation of thorium in solution. The toxicity of the metal over the species was observed just for thorium concentrations over 50.0 mg/L. A Monoraphidium sp. culture containing 6.25x10 5 microorganisms/mL reached a final concentration of 5.52x10 7 microorganisms/mL in the presence of thorium in the concentration of 10.0 mg/L. If we consider the 100.0 ppm thorium solution reached a final concentration of 8.57x10 6 microorganisms/mL. Control tests indicated a final concentration of 2.51x10 7 microorganisms/mL at the end of the growth. Scenedesmus sp. cells proved to be more resistant to the presence of thorium in solution. Low concentrations of the radionuclide favored the growth of these microalgae. A culture containing 7.65x10 5 microorganisms/mL reached a final concentration of 2.25x10 6 microorganisms/mL, in the absence of thorium in the medium. Toxicological tests indicated a final culture concentration of 5.87x10 6 microorganisms/mL in the presence of 0.5 mg/L thorium. The software used for comparison of direct count method proved to be very useful for the improvement of accuracy of the results obtained and a decrease in the uncertainty in counting. Beyond these advantages it also allowed recording of the data. From the present results one can conclude, that the presence

  2. Light, earthworms, and soil resources as predictors of diversity of 10 soil invertebrate groups across monocultures of 14 tree species

    OpenAIRE

    Mueller, KE; Eisenhauer, N; Reich, PB; Hobbie, SE; Chadwick, OA; Chorover, J; Dobies, T; Hale, CM; Jagodziński, AM; Kałucka, I; Kasprowicz, M; Kieliszewska-Rokicka, B; Modrzyński, J; Roz en, A; Skorupski, M

    2016-01-01

    © 2015. Management of biodiversity and ecosystem services requires a better understanding of the factors that influence soil biodiversity. We characterized the species (or genera) richness of 10 taxonomic groups of invertebrate soil animals in replicated monocultures of 14 temperate tree species. The focal invertebrate groups ranged from microfauna to macrofauna: Lumbricidae, Nematoda, Oribatida, Gamasida, Opilionida, Araneida, Collembola, Formicidae, Carabidae, and Staphylinidae. Measurement...

  3. Amphibious auditory evoked potentials in four North American Testudines genera spanning the aquatic-terrestrial spectrum.

    Science.gov (United States)

    Zeyl, Jeffrey N; Johnston, Carol E

    2015-10-01

    Animals exhibit unique hearing adaptations in relation to the habitat media in which they reside. This study was a comparative analysis of auditory specialization in relation to habitat medium in Testudines, a taxon that includes both highly aquatic and fully terrestrial members. Evoked potential audiograms were collected in four species groups representing diversity along the aquatic-terrestrial spectrum: terrestrial and fossorial Gopherus polyphemus, terrestrial Terrapene carolina carolina, and aquatic Trachemys scripta and Sternotherus (S. odoratus and S. minor). Additionally, underwater sensitivity was tested in T. c. carolina, T. scripta, and Sternotherus with tympana submerged just below the water surface. In aerial audiograms, T. c. carolina were most sensitive, with thresholds 18 dB lower than Sternotherus. At 100-300 Hz, thresholds in T. c. carolina, G. polyphemus, and T. scripta were similar to each other. At 400-800 Hz, G. polyphemus thresholds were elevated to 11 dB above T. c. carolina. The underwater audiograms of T. c. carolina, T. scripta, and Sternotherus were similar. The results suggest aerial hearing adaptations in emydids and high-frequency hearing loss associated with seismic vibration detection in G. polyphemus. The underwater audiogram of T. c. carolina could reflect retention of ancestral aquatic auditory function.

  4. [Occurrence of bacteria in the mouth from genera of Micrococcus, Kocuria, Nesterenkonia, Kytococcus and Dermacoccus].

    Science.gov (United States)

    Szczerba, Izabela; Krzemiński, Zbigniew

    2002-01-01

    The aim of the study was to assess the prevalence of different bacteria in the oral cavity. The bacteria were present in the oral cavities of 73 (48.7%) of 150 individuals. Nesterenkonia halobia, the most frequently isolated species, was found in 20 (27%) individuals, Micrococcus luteus in 16 (22%), Kocuria kristinae in 12 (16%), Kocuria varians in 10 (14%), Dermacoccus sedentarius in 9 (12%), Micrococcus lylae in 8 (11%), and Kytococcus nishinomiyaensis in 3 (4%). Mean counts of these microorganisms were relatively low and amounted in log10 CFU/ml saliva for M. luteus 1.87 +/- 0.52, for M. lylae 2.03 +/- 0.39, for N. halobia 2.14 +/- 0.56, for K. kristinae 2.20 +/- 0.69, for K. varians 2.19 +/- 0.67, for K. nishinomiyaensis 1.72 +/- 0.39, and for D. sedentarius 2.27 +/- 0.55. The factor limiting the population sizes of these microorganisms was most probably the antagonistic activity of the bacteria living in oral cavity.

  5. Experimental Inoculation of Egyptian Rousette Bats (Rousettus aegyptiacus with Viruses of the Ebolavirus and Marburgvirus Genera

    Directory of Open Access Journals (Sweden)

    Megan E.B. Jones

    2015-06-01

    Full Text Available The Egyptian rousette bat (Rousettus aegyptiacus is a natural reservoir for marburgviruses and a consistent source of virus spillover to humans. Cumulative evidence suggests various bat species may also transmit ebolaviruses. We investigated the susceptibility of Egyptian rousettes to each of the five known ebolaviruses (Sudan, Ebola, Bundibugyo, Taï Forest, and Reston, and compared findings with Marburg virus. In a pilot study, groups of four juvenile bats were inoculated with one of the ebolaviruses or Marburg virus. In ebolavirus groups, viral RNA tissue distribution was limited, and no bat became viremic. Sudan viral RNA was slightly more widespread, spurring a second, 15-day Sudan virus serial euthanasia study. Low levels of Sudan viral RNA disseminated to multiple tissues at early time points, but there was no viremia or shedding. In contrast, Marburg virus RNA was widely disseminated, with viremia, oral and rectal shedding, and antigen in spleen and liver. This is the first experimental infection study comparing tissue tropism, viral shedding, and clinical and pathologic effects of six different filoviruses in the Egyptian rousette, a known marburgvirus reservoir. Our results suggest Egyptian rousettes are unlikely sources for ebolaviruses in nature, and support a possible single filovirus—single reservoir host relationship.

  6. The presence of Praomys, Lophuromys, and Deomys species (Muridae, Mammalia) in the forest blocks separated by the Congo River and its tributaries (Kisangani region, Democratic Republic of Congo)

    DEFF Research Database (Denmark)

    Katuala, Pionus G B; Kennis, Jan; Nicolas, Violaine

    2008-01-01

    Praomys (four species), Lophuromys (four) and Deomys (one) are among the most common Muridae in the Kisangani region. To establish whether or not rivers constitute dispersal barriers for these rodents, we investigated the presence of these genera and their species in eight localities that are eit......Praomys (four species), Lophuromys (four) and Deomys (one) are among the most common Muridae in the Kisangani region. To establish whether or not rivers constitute dispersal barriers for these rodents, we investigated the presence of these genera and their species in eight localities...

  7. Diplocephalus komposchi n. sp., a new species of erigonine spider (Araneae, Linyphiidae) from Austria.

    Science.gov (United States)

    Milasowszky, Norbert; Bauder, Julia; Hepner, Martin

    2017-05-16

    The erigonine cladistic analyses of Hormiga (2000) and Miller & Hormiga (2004) demonstrated unambiguous support for a sister-taxon relationship between the genera Diplocephalus and Savignia. These genera, in addition to others, are commonly placed in the Savignia-group. Although the Savignia-group is not monophyletic as it was originally circumscribed by Millidge (1977), it contains a monophyletic core of genera that has been supported in various cladistic analyses, starting with Hormiga (2000). According to the most recent phylogenetic study (Frick et al. 2010), a clade within the Savignia-group included Diplocephalus along with Araeoncus, Dicymbium, Erigonella, Glyphesis and Savignia. Frick et al. (2010) included three Diplocephalus species - cristatus, latifrons and picinus - in their cladistic analyses. While D. latifrons and D. picinus were found to be the most basal species of the Savignia-group, D. cristatus was the most distal one.

  8. Efficient distinction of invasive aquatic plant species from non-invasive related species using DNA barcoding.

    Science.gov (United States)

    Ghahramanzadeh, R; Esselink, G; Kodde, L P; Duistermaat, H; van Valkenburg, J L C H; Marashi, S H; Smulders, M J M; van de Wiel, C C M

    2013-01-01

    Biological invasions are regarded as threats to global biodiversity. Among invasive aliens, a number of plant species belonging to the genera Myriophyllum, Ludwigia and Cabomba, and to the Hydrocharitaceae family pose a particular ecological threat to water bodies. Therefore, one would try to prevent them from entering a country. However, many related species are commercially traded, and distinguishing invasive from non-invasive species based on morphology alone is often difficult for plants in a vegetative stage. In this regard, DNA barcoding could become a good alternative. In this study, 242 samples belonging to 26 species from 10 genera of aquatic plants were assessed using the chloroplast loci trnH-psbA, matK and rbcL. Despite testing a large number of primer sets and several PCR protocols, the matK locus could not be amplified or sequenced reliably and therefore was left out of the analysis. Using the other two loci, eight invasive species could be distinguished from their respective related species, a ninth one failed to produce sequences of sufficient quality. Based on the criteria of universal application, high sequence divergence and level of species discrimination, the trnH-psbA noncoding spacer was the best performing barcode in the aquatic plant species studied. Thus, DNA barcoding may be helpful with enforcing a ban on trade of such invasive species, such as is already in place in the Netherlands. This will become even more so once DNA barcoding would be turned into machinery routinely operable by a nonspecialist in botany and molecular genetics. © 2012 Blackwell Publishing Ltd.

  9. EXOTIC SPECIES OF SOCOTRA ISLAND, YEMEN: A FIRST CONTRIBUTION

    Directory of Open Access Journals (Sweden)

    R.K. SOMASHEKAR

    2010-04-01

    Full Text Available A first inventory of the exotic species of Socotra has been compiled on the basis of the published literature and original distribution data collected by field surveys from 2006 to 2008. A strictly geographical and conservative approach was adopted including only cultivated species and those with a native range separated from Socotra territory. The extracted aliens (87 taxa, 68 genera, 40 family represent approximately 9% of the total flora of the region (850 taxa. Most were introduced in the past 10 to 20 years. Agricultural cultivated or crop species dominated with 38 species (43.7%, fruit followed by basing 14 species (16.1% and ruder or ornamental species (35 species, 40.2%.

  10. Vitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae.

    Science.gov (United States)

    Awal, Ram Prasad; Garcia, Ronald; Gemperlein, Katja; Wink, Joachim; Kunwar, Bikram; Parajuli, Niranjan; Müller, Rolf

    2017-05-01

    Bacterial strains MCy10943T and MCy10944T were isolated in 2014 from dried Nepalese soil samples collected in 2013 from Phukot, Kalikot, Western Nepal, and Godawari, Lalitpur, Central Nepal. The novel organisms showed typical myxobacterial growth characteristics, which include swarming colony and fruiting body formation on solid surfaces, and a predatory ability to lyse micro-organisms. The strains were aerobic, mesophilic, chemoheterotrophic and showed resistance to various antibiotics. The major cellular fatty acids common to both organisms were C17 : 0 2-OH, iso-C15 : 0, C16 : 1 and iso-C17 : 0. The G+C content of the genomic DNA was 72-75 mol%. Phylogenetic analysis showed that the strains belong to the family Cystobacteraceae, suborder Cystobacterineae, order Myxococcales. The 16S rRNA gene sequences of both strains showed 97-98 % similarity to Archangium gephyra DSM 2261T andCystobacter violaceus DSM 14727T, and 96.7-97 % to Cystobacter fuscus DSM 2262T and Angiococcus disciformis DSM 52716T. Polyphasic taxonomic characterization suggested that strains MCy10943T and MCy10944T represent two distinct species of a new genus, for which the names Vitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov. are proposed. The type strain of Vitiosangium cumulatum is MCy10943T (=DSM 102952T=NCCB 100600T) while that for Vitiosangium subalbum is MCy10944T (=DSM 102953T=NCCB 100601T). In addition, emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceaeare provided.

  11. Natural Products from Antarctic Colonial Ascidians of the Genera Aplidium and Synoicum: Variability and Defensive Role

    Directory of Open Access Journals (Sweden)

    Conxita Avila

    2012-08-01

    Full Text Available Ascidians have developed multiple defensive strategies mostly related to physical, nutritional or chemical properties of the tunic. One of such is chemical defense based on secondary metabolites. We analyzed a series of colonial Antarctic ascidians from deep-water collections belonging to the genera Aplidium and Synoicum to evaluate the incidence of organic deterrents and their variability. The ether fractions from 15 samples including specimens of the species A. falklandicum, A. fuegiense, A. meridianum, A. millari and S. adareanum were subjected to feeding assays towards two relevant sympatric predators: the starfish Odontaster validus, and the amphipod Cheirimedon femoratus. All samples revealed repellency. Nonetheless, some colonies concentrated defensive chemicals in internal body-regions rather than in the tunic. Four ascidian-derived meroterpenoids, rossinones B and the three derivatives 2,3-epoxy-rossinone B, 3-epi-rossinone B, 5,6-epoxy-rossinone B, and the indole alkaloids meridianins A–G, along with other minoritary meridianin compounds were isolated from several samples. Some purified metabolites were tested in feeding assays exhibiting potent unpalatabilities, thus revealing their role in predation avoidance. Ascidian extracts and purified compound-fractions were further assessed in antibacterial tests against a marine Antarctic bacterium. Only the meridianins showed inhibition activity, demonstrating a multifunctional defensive role. According to their occurrence in nature and within our colonial specimens, the possible origin of both types of metabolites is discussed.

  12. Korean indigenous bacterial species with valid names belonging to the phylum Actinobacteria.

    Science.gov (United States)

    Bae, Kyung Sook; Kim, Mi Sun; Lee, Ji Hee; Kang, Joo Won; Kim, Dae In; Lee, Ji Hee; Seong, Chi Nam

    2016-12-01

    To understand the isolation and classification state of actinobacterial species with valid names for Korean indigenous isolates, isolation source, regional origin, and taxonomic affiliation of the isolates were studied. At the time of this writing, the phylum Actinobacteria consisted of only one class, Actinobacteria, including five subclasses, 10 orders, 56 families, and 330 genera. Moreover, new taxa of this phylum continue to be discovered. Korean actinobacterial species with a valid name has been reported from 1995 as Tsukamurella inchonensis isolated from a clinical specimen. In 1997, Streptomyces seoulensis was validated with the isolate from the natural Korean environment. Until Feb. 2016, 256 actinobacterial species with valid names originated from Korean territory were listed on LPSN. The species were affiliated with three subclasses (Acidimicrobidae, Actinobacteridae, and Rubrobacteridae), four orders (Acidimicrobiales, Actinomycetales, Bifidobacteriales, and Solirubrobacterales), 12 suborders, 36 families, and 93 genera. Most of the species belonged to the subclass Actinobacteridae, and almost of the members of this subclass were affiliated with the order Actinomycetales. A number of novel isolates belonged to the families Nocardioidaceae, Microbacteriaceae, Intrasporangiaceae, and Streptomycetaceae as well as the genera Nocardioides, Streptomyces, and Microbacterium. Twenty-six novel genera and one novel family, Motilibacteraceae, were created first with Korean indigenous isolates. Most of the Korean indigenous actionobacterial species were isolated from natural environments such as soil, seawater, tidal flat sediment, and fresh-water. A considerable number of species were isolated from artificial resources such as fermented foods, wastewater, compost, biofilm, and water-cooling systems or clinical specimens. Korean indigenous actinobacterial species were isolated from whole territory of Korea, and especially a large number of species were from Jeju

  13. Tree species diversity in the Eastern Ghats of northern Andhra Pradesh, India

    Directory of Open Access Journals (Sweden)

    M. Tarakeswara Naidu

    2015-06-01

    Full Text Available The present study was conducted to analyze tree species diversity in the tropical forests of the Eastern Ghats of northern Andhra Pradesh, India.  A total of 270 species of trees (≥15cm girth at breast height pertaining to 177 genera belonging to 55 families were recorded.  Among the 270 species, 141 species were observed to be common, 78 were occasional and 51 species were rare in the study area.  Fabaceae was the dominant family with 33 species followed by Rubiaceae with 15 species and Malvaceae, Moraceae and Phyllanthaceae with 13 species each.  The genera with the highest number of species include Ficus (12 species, Diospyros (8 species, Albizia and Grewia (6 species each, Acacia and Bauhinia (5 species each.  Forty-five percent of the species were indigenous. This illustrates the diversity of the tree species in the studied area of the Eastern Ghats and also emphasizes the need for their conservation. 

  14. Revisão dos gêneros Pseudestola Breuning, Estolomimus Breuning e Euestola Breuning (Coleoptera, Cerambycidae, Lamiinae, Demiphorini Revision of the genera Pseudestola Breuning, Estolomimus Breuning and Euestola Breuning (Coleoptera, Cerambycidae, Lamiinae, Demiphorini

    Directory of Open Access Journals (Sweden)

    Ubirajara R Martins

    1997-01-01

    Full Text Available The genera Pseudestola, Estolomimus and Euestola are revised and keyed. Neoestola Breuning, 1940 is considered a synonym oi Estolomimus Breuning, 1940. Estola curta Breuning, 1940 is transferred to Estolomimus and redescribed. New species described from Brazil: Estolomimus apicale sp.n. (Espírito Santo, E. distinctus sp.n. (Espírito Santo, E. pulvereus sp.n. (Santa Catarina; Euestolafasciata sp.n. (São Paulo to Santa Catariana, E. basalis sp.n. (Minas Gerais, E. lineata sp.n. (Espírito Santo. Redescriptions and additional records are provided for: Pseudestola densepunclata Breuning, 1940, Estolomimus solidus (Breuning, 1940, E. marmoralus Breuning, 1940 and Euestola basidensepunctata Breuning, 1943.

  15. Revisão de Anyphaeninae Bertkau a nível de gêneros na Região Neotropical (Araneae, Anyphaenidae Revision of Anyphaeninae Bertkau at genera level in the Neotropical Region (Araneae, Anyphaenidae

    Directory of Open Access Journals (Sweden)

    Antonio Domingos Brescovit

    1996-12-01

    Full Text Available The subfamily Anyphaeninae is revised at genera level in the Neotropical region. Anyphaeninae is diagnosed by the tracheal spiracle approximately in the midway of venter or between the midway of venter and the epigastric groove; retromargin of chelicerae with more than four denticles; and male palp with tegulum basket-like or cup-like, without the basal lightly sclerotized area. The subfamily contais 32 genera, 14 of which are new: Aljassa (type species Teudis annulipes Caporiacco, Buckupiella (type species B. imperatriz sp.n., from Brazil and Argentina, Hatitia (type species H.yhuaia sp.n., from Peru Iguarima (type species Anyphaena censoria Keyserling, Ilocomba (type species I. marta sp.n., from Colombia, Italaman (type species I. santamarina sp.n., from Brazil, Colombia and Argentine, Jessica (type species Osoriella osoriana Mello-Leitão, Katissa (type from Jamaica, Otoniela (type species O. adisi sp.n., from Brazil, Pippuhana (type species P. gandu sp.n., from Brazil, Timbuka (type species T. boquete sp.n., from Costa Rica, Panamá and Colômbia, Umuara (type species Clubiona fasciata Blackwall, Xiruana (type species Aysha gracilipes Keyserling. Other new species and the male of Bromelina zuniala are described: Iguarima pichinha and Lepajan edwardsi from Ecuador; Temnida rosário, Umuara pydanieli and U. juquia from Brazil; Umuara junin, Hatitia conchaque from Peru; Ilcomba perija from Colombia. Twelve new synonyms are presenteei: Wuljilopsis keyserlingi soares & Camargo witn W. tenuips (Keyserling; Teudis foliatus Schmidt with Patrera ruber (F.O.P. - Cambridge; Teudis moreirae Mello-Leitão with Teudis angusticeps (Keyserling; Anyphaena rufibarbis Mello-Leitão with Jessica osoriana (Mello-Leitão; Aysha cinereoviítata Mello-Leitão with Iguarima censoria (Keyserling; Teudis bucolicus Chickering with Katissa simplicipalpis (Simon; Gayenna minutissima Petrunkevitch with Lupetíiana mordax (O.P.-Cambridge; Teudis adfabilis (Keyserling and

  16. Evaluation of Species Richness of Acrocarpous Mosses in Imphal District, Manipur, India

    Directory of Open Access Journals (Sweden)

    H. Govindapyari

    2012-03-01

    Full Text Available Mosses are remarkably successful colonizer on the variety of habitats. They can survive in extreme environmental conditions where only a few other plants grow. The main attributes of mosses are compact growth form, ability to retain moisture, ectohydric nature, poikilohydry and low growing habit. The occurrence of a particular species may reflect the microclimate of the locality. The present study reveals 75 species of acrocarpous mosses belonging to 23 genera and nine families from Imphal district which is an urban site of tropical climate. The most frequently occurring family is observed to be Pottiaceae with 28 species and 11 genera. The genus Bryum with 13 species is found to have highest number of species followed by Fissidens and Physcomitrium. Splachnobryum sp. and Bryum argenteum are found to be distributed on the nitrophilous substrata. It seems that changing climatic conditions and pollution are restricting the sexual reproduction and subsequently the genetic variability and adaptability in the moss taxa.

  17. Rare species of fungi parasitizing on algae. IV

    Directory of Open Access Journals (Sweden)

    Joanna Z. Kadłubowska

    2014-08-01

    Full Text Available The following parasites of the genera Spirogyra Link, Mougeotia Agardh and Oedogonium Link are desribed: Myzocyutium irregulare, Woroninu glomerata, Harpochytrium tenuissimum, Woronina polycystis, Chytridium acuminatu, Myzocytium irregulare and Chytridumm acuminatum are new to Poland. Also, the first information on Woronina polycystis as a parasite on algae is presented. The figure of cystosori in a cell of Mougeotia mysorensis is the first graphic documentation of this species.

  18. Phylogeny, biogeography and character evolution in the tribe Desmodieae (Fabaceae: Papilionoideae), with special emphasis on the New Caledonian endemic genera.

    Science.gov (United States)

    Jabbour, Florian; Gaudeul, Myriam; Lambourdière, Josie; Ramstein, Guillaume; Hassanin, Alexandre; Labat, Jean-Noël; Sarthou, Corinne

    2018-01-01

    The nearly cosmopolitan tribe Desmodieae (Fabaceae) includes many important genera for medicine and forage. However, the phylogenetic relationships among the infratribal groups circumscribed using morphological traits are still poorly known. In this study, we used chloroplast (rbcL, psbA-trnH) and nuclear (ITS-1) DNA sequences to investigate the molecular phylogeny and historical biogeography of Desmodieae, and infer ancestral states for several vegetative and reproductive traits. Three groups, corresponding to the Desmodium, Lespedeza, and Phyllodium groups sensu Ohashi were retrieved in the phylogenetic analyses. Conflicts in the topologies inferred from the chloroplast and nuclear datasets were detected. For instance, the Lespedeza clade was sister to the groups Phyllodium+Desmodium based on chloroplast DNA, but nested within the Desmodium group based on ITS-1. Moreover, the New Caledonian endemic genera Arthroclianthus and Nephrodesmus were not monophyletic but together formed a clade, which also included Hanslia and Ohwia based on chloroplast DNA. The hypothetical common ancestor of Desmodieae was dated to the Middle Oligocene (ca. 28.3Ma) and was likely an Asian shrub or tree producing indehiscent loments. Several colonization events towards Oceania, America, and Africa occurred (all less than ca. 17.5Ma), most probably through long distance dispersal. The fruits of Desmodieae repeatedly evolved from indehiscence to dehiscence. We also showed that indehiscent loments allow for more variability in the number of seeds per fruit than indehiscent legumes. Modularity seems here to allow variability in the number of ovules produced in a single ovary. Copyright © 2017 Elsevier Inc. All rights reserved.

  19. Notes on some Indo-Pacific Pontoniinae III-IX descriptions of some new genera and species from the Western Indian Ocean and the South China Sea

    NARCIS (Netherlands)

    Bruce, A.J.

    1967-01-01

    CONTENTS Introduction................... 1 III. Anapontonia denticauda Bruce, 1966, from the western Indian Ocean . . 2 IV. Mesopontonia gorgoniophila gen. nov., sp. nov., from the South China Sea 13 V. Metapontonia fungiacola gen. nov., sp. nov., from the western Indian Ocean 23 VI. The genus

  20. Taxonomic position and phylogenetic relationships of the genera and species Euaphidius and Remaudierea (Hymenoptera: Braconidae: Aphidiinae) analyzed using molecular markers and geometric morphometrics

    Czech Academy of Sciences Publication Activity Database

    Milošević, M.I.; Petrović, A.; Stanković, S. S.; Črkić, J.; Starý, Petr; Žikić, V.; Tomanović, Ž.

    2015-01-01

    Roč. 108, č. 3 (2015), s. 435-445 ISSN 0013-8746 Grant - others:The Ministry of Education, Science, and Technological Development of the Republic of Serbia(RS) III43001 Institutional support: RVO:60077344 Keywords : Aphidius * Euaphidius * Remaudierea Subject RIV: EG - Zoology Impact factor: 1.140, year: 2015

  1. Development, cross-species/genera transferability of novel EST-SSR markers and their utility in revealing population structure and genetic diversity in sugarcane

    KAUST Repository

    Singh, Ram K.; Jena, Satya N.; Khan, Mohammad Suhail; Yadav, Sonia; Banarjee, Nandita; Raghuvanshi, Saurabh; Bhardwaj, Vasudha; Dattamajumder, Sanjay K.; Kapur, Raman; Solomon, Sushil; Swapna, M.; Srivastava, Sangeeta; Tyagi, Akhilesh K.

    2013-01-01

    for population structure using model-based approach, seven genetically distinct groups or admixtures thereof were observed in sugarcane. Results of principal coordinate analysis or UPGMA to evaluate genetic relationships delineated also the 124 accessions

  2. Host specificity for bacterial, archaeal and fungal communities determined for high- and low-microbial abundance sponge species in two genera

    NARCIS (Netherlands)

    Mares, De Maryam Chaib; Sipkema, Detmer; Huang, Sixing; Bunk, Boyke; Overmann, Jörg; Elsas, van Jan Dirk

    2017-01-01

    Sponges are engaged in intimate symbioses with a diversity of microorganisms from all three domains of life, namely Bacteria, Archaea and Eukarya. Sponges have been well studied and categorized for their bacterial communities, some displaying a high microbial abundance (HMA), while others show

  3. Confamiliar transferability of simple sequence repeat (SSR) markers from cotton (Gossypium hirsutum L.) and jute (Corchorus olitorius L.) to twenty two Malvaceous species.

    Science.gov (United States)

    Satya, Pratik; Paswan, Pramod Kumar; Ghosh, Swagata; Majumdar, Snehalata; Ali, Nasim

    2016-06-01

    Cross-species transferability is a quick and economic method to enrich SSR database, particularly for minor crops where little genomic information is available. However, transferability of SSR markers varies greatly between species, genera and families of plant species. We assessed confamiliar transferability of SSR markers from cotton (Gossypium hirsutum) and jute (Corchorus olitorius) to 22 species distributed in different taxonomic groups of Malvaceae. All the species selected were potential industrial crop species having little or no genomic resources or SSR database. Of the 14 cotton SSR loci tested, 13 (92.86 %) amplified in G. arboreum and 71.43 % exhibited cross-genera transferability. Nine out of 11 jute SSRs (81.81 %) showed cross-transferability across genera. SSRs from both the species exhibited high polymorphism and resolving power in other species. The correlation between transferability of cotton and jute SSRs were highly significant (r = 0.813). The difference in transferability among species was also significant for both the marker groups. High transferability was observed at genus, tribe and subfamily level. At tribe level, transferability of jute SSRs (41.04 %) was higher than that of cotton SSRs (33.74 %). The tribe Byttnerieae exhibited highest SSR transferability (48.7 %). The high level of cross-genera transferability (>50 %) in ten species of Malvaceae, where no SSR resource is available, calls for large scale transferability testing from the enriched SSR databases of cotton and jute.

  4. Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family.

    Science.gov (United States)

    Gao, Ting; Yao, Hui; Song, Jingyuan; Zhu, Yingjie; Liu, Chang; Chen, Shilin

    2010-10-26

    Five DNA regions, namely, rbcL, matK, ITS, ITS2, and psbA-trnH, have been recommended as primary DNA barcodes for plants. Studies evaluating these regions for species identification in the large plant taxon, which includes a large number of closely related species, have rarely been reported. The feasibility of using the five proposed DNA regions was tested for discriminating plant species within Asteraceae, the largest family of flowering plants. Among these markers, ITS2 was the most useful in terms of universality, sequence variation, and identification capability in the Asteraceae family. The species discriminating power of ITS2 was also explored in a large pool of 3,490 Asteraceae sequences that represent 2,315 species belonging to 494 different genera. The result shows that ITS2 correctly identified 76.4% and 97.4% of plant samples at the species and genus levels, respectively. In addition, ITS2 displayed a variable ability to discriminate related species within different genera. ITS2 is the best DNA barcode for the Asteraceae family. This approach significantly broadens the application of DNA barcoding to resolve classification problems in the family Asteraceae at the genera and species levels.

  5. [Seasonality and landscape use by Tabanidae species (Diptera) in the Central Amazon, Brazil].

    Science.gov (United States)

    Ferreira-Keppler, Ruth L; Rafael, José A; Guerrero, José C H

    2010-01-01

    Adults of Tabanidae may become serious pests wherever they occur due to their attack to humans and others animals. Tabanids were captured near ground, water surface and at 25 m high on primary forests and forest gaps of anthropogenic origin, to understand their abundance, seasonality, diversity and similarity on such environments. Collections were carried out in the Base II of the War Instruction Center in the Jungle (CIGS) located at 54 km from Manaus municipality, Amazonas state. Two Malaise flight interception traps and four attraction traps (two suspended at 25 m high and two above the water surface of igarapé) were installed in forest gap and primary forest, areas for 10 consecutive days, during 15 months. A total of 2,643 specimens of 66 species were captured. Diachlorini (35 species /11 genera) was the most abundant tribe, followed by Tabanini (19 species /three genera), Chrysopsini (seven species /one genus) and Scionini (five species /two genera). Seventeen species were captured only in the primary forest, 11 in the anthropic clearing, and 38 species were common to both environments. The most abundant species were Phorcotabanus cinereus (Wiedemann), Tabanus occidentalis L, Chrysops laetus Fabricius and Tabanus angustifrons Macquart. The greatest richness was found in drier months (September/October) in both areas. Theforest gap showed higher abundance of specimens (1,827) than the primary forest (816). Traps suspended above the water surface were the most efficient (1,723 specimens) probably due to the dispersion of horseflies over small streams.

  6. Evaluating the feasibility of using candidate DNA barcodes in discriminating species of the large Asteraceae family

    Directory of Open Access Journals (Sweden)

    Liu Chang

    2010-10-01

    Full Text Available Abstract Background Five DNA regions, namely, rbcL, matK, ITS, ITS2, and psbA-trnH, have been recommended as primary DNA barcodes for plants. Studies evaluating these regions for species identification in the large plant taxon, which includes a large number of closely related species, have rarely been reported. Results The feasibility of using the five proposed DNA regions was tested for discriminating plant species within Asteraceae, the largest family of flowering plants. Among these markers, ITS2 was the most useful in terms of universality, sequence variation, and identification capability in the Asteraceae family. The species discriminating power of ITS2 was also explored in a large pool of 3,490 Asteraceae sequences that represent 2,315 species belonging to 494 different genera. The result shows that ITS2 correctly identified 76.4% and 97.4% of plant samples at the species and genus levels, respectively. In addition, ITS2 displayed a variable ability to discriminate related species within different genera. Conclusions ITS2 is the best DNA barcode for the Asteraceae family. This approach significantly broadens the application of DNA barcoding to resolve classification problems in the family Asteraceae at the genera and species levels.

  7. SPECIES DIVERSITY AND COMMUNITY STRUCTURE OF SUCKING LICE IN YUNNAN, CHINA

    Institute of Scientific and Technical Information of China (English)

    Xian-guoGuo; Ti-junQian; Li-junGuo; JingWang; Wen-geDong; LiZhang; Zhi-minMa; andWeiLi

    2004-01-01

    On the basis of investigating 9 counties (towns) in Yunnan Province of China, the species diversity and community structure of sucking lice on the body surface of small mammal hosts are studied in the paper. Species richness (S) is used to stand for the species diversity. The calculation of community diversity index and evenness are based on Shannon-Wiener's method. 2745 small mammals captured from the investigated sites belong to 10 families, 25 genera and 41 species in 5 orders (Rodentia, Insectivora, Scandentia, Logomorpha and Carnivora) while 18165 individuals of sucking lice collected from the body surface of the small mammal hosts are identified into 4 families, 6 genera and 22 species. The species of sucking lice are much less than the species of their hosts. Most species of small mammals have their fixed sucking lice on their body surface. One species of small mammals usually have few species of sucking lice (1 to 4 species). The close species of the hosts in the taxonomy are found to have the same or similar dominant species of sucking lice on their body surface. The results reveal that the species diversity of sucking lice on small mammals is very low with a very simple community structure. The results also imply there may be a close co-evolution relationship between the lice and the hosts.

  8. SALMONELLA SPECIES

    African Journals Online (AJOL)

    DR. AMINU

    ... of Salmonella species serotypes in relation to age and sex among children, ..... However, most antimicrobials show sufficient selective toxicity to be of value in ... salmonellosis should be given good attention (Barrow et al., 2007). To reduce ...

  9. Western Amazonian Ticapimpla (Hymenoptera: Ichneumonidae: Pimplinae): Four New Species from Colombia, Ecuador, and Peru, with a Key to Species of the Genus

    OpenAIRE

    Edgard Palacio; Gavin R. Broad; Ilari E. Sääksjärvi; Anu Veijalainen

    2010-01-01

    Ticapimpla is a small genus closely related to the New World genera Acrotaphus and Hymenoepimecis. It has been previously reported from Costa Rica and Brazil. In this paper, we describe four new species: T. amazonica from Ecuador and Peru, T. carinata from Colombia and Peru, T. matamatae from Colombia, and T. soinii from Colombia, Ecuador, and Peru. All have been collected in Western Amazonia, suggesting a South American origin for the genus. A key to the known species of the genus is provided.

  10. Universal Plant DNA Barcode Loci May Not Work in Complex Groups: A Case Study with Indian Berberis Species

    Science.gov (United States)

    Roy, Sribash; Tyagi, Antariksh; Shukla, Virendra; Kumar, Anil; Singh, Uma M.; Chaudhary, Lal Babu; Datt, Bhaskar; Bag, Sumit K.; Singh, Pradhyumna K.; Nair, Narayanan K.; Husain, Tariq; Tuli, Rakesh

    2010-01-01

    Background The concept of DNA barcoding for species identification has gained considerable momentum in animals because of fairly successful species identification using cytochrome oxidase I (COI). In plants, matK and rbcL have been proposed as standard barcodes. However, barcoding in complex genera is a challenging task. Methodology and Principal Findings We investigated the species discriminatory power of four reportedly most promising plant DNA barcoding loci (one from nuclear genome- ITS, and three from plastid genome- trnH-psbA, rbcL and matK) in species of Indian Berberis L. (Berberidaceae) and two other genera, Ficus L. (Moraceae) and Gossypium L. (Malvaceae). Berberis species were delineated using morphological characters. These characters resulted in a well resolved species tree. Applying both nucleotide distance and nucleotide character-based approaches, we found that none of the loci, either singly or in combinations, could discriminate the species of Berberis. ITS resolved all the tested species of Ficus and Gossypium and trnH-psbA resolved 82% of the tested species in Ficus. The highly regarded matK and rbcL could not resolve all the species. Finally, we employed amplified fragment length polymorphism test in species of Berberis to determine their relationships. Using ten primer pair combinations in AFLP, the data demonstrated incomplete species resolution. Further, AFLP analysis showed that there was a tendency of the Berberis accessions to cluster according to their geographic origin rather than species affiliation. Conclusions/Significance We reconfirm the earlier reports that the concept of universal barcode in plants may not work in a number of genera. Our results also suggest that the matK and rbcL, recommended as universal barcode loci for plants, may not work in all the genera of land plants. Morphological, geographical and molecular data analyses of Indian species of Berberis suggest probable reticulate evolution and thus barcode markers may

  11. Universal plant DNA barcode loci may not work in complex groups: a case study with Indian berberis species.

    Directory of Open Access Journals (Sweden)

    Sribash Roy

    Full Text Available BACKGROUND: The concept of DNA barcoding for species identification has gained considerable momentum in animals because of fairly successful species identification using cytochrome oxidase I (COI. In plants, matK and rbcL have been proposed as standard barcodes. However, barcoding in complex genera is a challenging task. METHODOLOGY AND PRINCIPAL FINDINGS: We investigated the species discriminatory power of four reportedly most promising plant DNA barcoding loci (one from nuclear genome--ITS, and three from plastid genome--trnH-psbA, rbcL and matK in species of Indian Berberis L. (Berberidaceae and two other genera, Ficus L. (Moraceae and Gossypium L. (Malvaceae. Berberis species were delineated using morphological characters. These characters resulted in a well resolved species tree. Applying both nucleotide distance and nucleotide character-based approaches, we found that none of the loci, either singly or in combinations, could discriminate the species of Berberis. ITS resolved all the tested species of Ficus and Gossypium and trnH-psbA resolved 82% of the tested species in Ficus. The highly regarded matK and rbcL could not resolve all the species. Finally, we employed amplified fragment length polymorphism test in species of Berberis to determine their relationships. Using ten primer pair combinations in AFLP, the data demonstrated incomplete species resolution. Further, AFLP analysis showed that there was a tendency of the Berberis accessions to cluster according to their geographic origin rather than species affiliation. CONCLUSIONS/SIGNIFICANCE: We reconfirm the earlier reports that the concept of universal barcode in plants may not work in a number of genera. Our results also suggest that the matK and rbcL, recommended as universal barcode loci for plants, may not work in all the genera of land plants. Morphological, geographical and molecular data analyses of Indian species of Berberis suggest probable reticulate evolution and thus

  12. Susceptibility to Phytophthora ramorum and inoculum production potential of some common eastern forest understory plant species

    Science.gov (United States)

    Paul W. Tooley; Marsha Browning

    2009-01-01

    Twenty-five plant species (21 genera, 14 families), which comprise a portion of the understory in forests of the Eastern United States, were evaluated for susceptibility to infection by Phytophthora ramorum. The degree to which P. ramorum is able to form sporangia and chlamydospores was also assessed on...

  13. Species relationships in Lactuca S.L. (Lactuceae, Asteraceae) inferred from AFLP fingerprints

    NARCIS (Netherlands)

    Koopman, W.J.M.; Zevenbergen, M.J.; Berg, van den R.G.

    2001-01-01

    An AFLP data set comprising 95 accessions from 20 species of Lactuca s.l. (sensu lato) and related genera was generated using the primer combinations E35/M48 and E35/M49. In phenetic analyses of a data subset, clustering with UPGMA based on Jaccard's similarity coefficient resulted in the highest

  14. A new genus and species of Bythitidae (Teleostei: Ophidiiformes) from northwestern Australia

    DEFF Research Database (Denmark)

    Nielsen, Jørgen; Schwarzhans, Werner

    2011-01-01

    A new genus and species of bathyal bythitid fish (Teleostei: Ophidiiformes) is described based on a single specimen caught at a depth of 392 m in the Timor Sea off the coast of northwestern Australia. Timorichthys disjunctus gen. nov., sp. nov. differs from all other bythitid genera by the position...

  15. Macaca munzala: a new species from Western Arunachal Pradesh, Northeastern India

    NARCIS (Netherlands)

    Sinha, A.; Datta, A.; Madhusudan, M.D.; Mishra, C.

    2005-01-01

    Macaca, comprising 20 well-characterized species, represents the largest and one of the most ecologically and socially diverse of all the nonhuman primate genera. We report the discovery of a macaque that is new to science from the high altitudes of western Arunachal Pradesh, a biodiversity-rich

  16. Haruchlora maesi, a new emerald moth genus and species from Mesoamerica (Lepidoptera, Geometridae, Geometrinae).

    Science.gov (United States)

    Viidalepp, Jaan; Lindt, Aare

    2014-09-30

    A new genus and species of Neotropical emerald geometrid moths, Haruchlora Viidalepp & Lindt, gen. nov., and Haruchlora maesi Viidalepp & Lindt, sp. nov. are described. The new genus differs from all other New World Geometrinae genera in having a bifid uncus, in characters of the pregenital segments of the male abdomen, and in the male genitalia. 

  17. Wood anatomy of the Brazilian species of Swartizia and considerations within the tribe Swartzieae

    Science.gov (United States)

    Veronica Angyalossy-Alfonso

    2002-01-01

    Fifty-one Brazilian species and varieties of Swartzia Schreber and eight other genera from the tribe Swartzieae were examined. Features with the greatest diagnostic value for the tribe are intervascular pit size, ray width and frequency, storied structure, axial parenchyma strand length, parenchyma band width, and vessel diameter. We analyzed the wood anatomical data...

  18. A new genus and two new species of the crustacean order Thermosbaebacea from the West Indies

    NARCIS (Netherlands)

    Stock, Jan H.

    1976-01-01

    Up to now, the crustacean order Thermosbaenacea contained two genera with only six valid species, five from the panmediterranean region, one from Texas. Two new members of this curious group of “living fossils” have been discovered in the West Indies. The one, from two deep wells not far from the

  19. The new sponge species Amphoriscus pedunculatus (Porifera, Calcarea).

    Science.gov (United States)

    Klautau, Michelle; Cavalcanti, Fernanda F; Borojevic, Radovan

    2017-10-30

    Amphoriscus is a widespread genus with 17 species. A new species was found in SE Brazil and it represents the second species of this genus in Brazilian waters. Amphoriscus pedunculatus sp. nov. has a special structure, a peduncle, to attach to the substrate. Special attachment structures are not very common in the class Calcarea but this is the third species of the genus with a peduncle. Besides peduncle, another attachment structure found in some species of Amphoriscus is the root-tuft, an attachment structure composed of diactines and anchor-like triactines or tetractines. The evolution of these attachment structures in Amphoriscus is not known but they have also been found out of this genus, suggesting that these structures appeared several times during the evolution of Calcarea or that species currently classified in different genera are in fact congeneric.

  20. Magnoliophyta species of restinga, state of Pernambuco, Brazil.

    Directory of Open Access Journals (Sweden)

    Zickel, C. S.

    2007-01-01

    Full Text Available Restinga vegetation occurs along the entire coast of Brazil. The 187 km of coastline of the state ofPernambuco demonstrates a diversity of habitats, such as beaches, dunes, and restingas. The present study sought toelaborate a checklist of the phanerogamic species found there. The species listed were compiled from surveysundertaken between 1951 and 2007, as well as from herbaria collections in that state. A total of 477 species distributedamong 303 genera and 95 families were encountered. The families with the greatest numbers of species were Poaceae(39 species, Fabaceae (34, Cyperaceae (26, Euphorbiaceae (25, Myrtaceae (24, Rubiaceae (20, Caesalpiniaceae(17, Mimosaceae (16, Asteraceae (14, Orchidaceae (14, Bromeliaceae (9, Boraginaceae (8, Malvaceae (8,Solanaceae (8, and Annonaceae, Araceae, Chrysobalanaceae, Malpighiaceae, and Melastomataceae (7 each.Approximately 60 % of the species were common to other restinga areas in northeastern Brazil, and 39.3 % wererestricted to the coast of Pernambuco.

  1. Fusarium Species and Their Associated Mycotoxins.

    Science.gov (United States)

    Munkvold, Gary P

    2017-01-01

    The genus Fusarium includes numerous toxigenic species that are pathogenic to plants or humans, and are able to colonize a wide range of environments on earth. The genus comprises around 70 well-known species, identified by using a polyphasic approach, and as many as 300 putative species, according to phylogenetic species concepts; many putative species do not yet have formal names. Fusarium is one of the most economically important fungal genera because of yield loss due to plant pathogenic activity; mycotoxin contamination of food and feed products which often render them unaccep for marketing; and health impacts to humans and livestock, due to consumption of mycotoxins. Among the most important mycotoxins produced by species of Fusarium are the trichothecenes and the fumonisins. Fumonisins cause fatal livestock diseases and are considered potentially carcinogenic mycotoxins for humans, while trichothecenes are potent inhibitors of protein synthesis. This chapter summarizes the main aspects of morphology, pathology, and toxigenicity of the main Fusarium species that colonize different agricultural crops and environments worldwide, and cause mycotoxin contamination of food and feed.

  2. Modern alongside traditional taxonomy—Integrative systematics of the genera Gymnangium Hincks, 1874 and Taxella Allman, 1874 (Hydrozoa, Aglaopheniidae)

    Science.gov (United States)

    Boissin, Emilie; Postaire, Bautisse; Bourmaud, Chloé Annie-France; Gravier-Bonnet, Nicole; Schuchert, Peter

    2017-01-01

    We studied the diversity within the former genus Gymnangium in the South West Indian Ocean by using an integrative approach of both traditional (morphology-based) and modern molecular taxonomy. Nine species were recorded in the material collected. A total of 97 16S mitochondrial DNA sequences and 54 Calmodulin nuclear sequences from eight Gymnangium/Taxella species were analyzed. We found both morphological and molecular differences in the studied Gymnangium species that make it necessary to split the genus. It is proposed to revalidate the genus Taxella which is currently regarded as a synonym of Gymnangium. Two species of the genus Taxella (T. eximia and T. gracilicaulis), until now regarded as distinct species based on morphological characteristics, cluster together in one phylogenetic clade. Possible explanations are discussed. Two species from Madagascar new to science are herein described and rare species from the Indian Ocean islands are re-described. PMID:28422958

  3. Floral reward in Ranunculaceae species

    Directory of Open Access Journals (Sweden)

    Bożena Denisow

    2016-04-01

    Full Text Available Floral reward is important in ecological and evolutionary perspectives and essential in pollination biology. For example, floral traits, nectar and pollen features are essential for understanding the functional ecology, the dynamics of pollen transport, competition for pollinator services, and patterns of specialization and generalization in plant–pollinator interactions. We believe to present a synthetic description in the field of floral reward in Ranunculaceae family important in pollination biology and indicating connections between ecological and evolutionary approaches. The links between insect visitors’ behaviour and floral reward type and characteristics exist. Ranunculaceae is a family of aboot 1700 species (aboot 60 genera, distributed worldwide, however the most abundant representatives are in temperate and cool regions of the northern and southern hemispheres. The flowers are usually radially symmetric (zygomorphic and bisexual, but in Aconitum, Aquilegia are bilaterally symmetric (zygomorphic. Most Ranunculaceae flowers offer no nectar, only pollen (e.g., Ranunculus, Adonis vernalis, Thalictrum, but numerous species create trophic niches for different wild pollinators (e.g. Osmia, Megachile, Bombus, Andrena (Denisow et al. 2008. Pollen is a source of protein, vitamins, mineral salts, organic acids and hormones, but the nutritional value varies greatly between different plant species. The pollen production can differ significantly between Ranunculacea species. The mass of pollen produced in anthers differ due to variations in the number of developed anthers. For example, interspecies differences are considerable, 49 anthers are noted in Aquilegia vulgaris, 70 anthers in Ranunculus lanuginosus, 120 in Adonis vernalis. A significant intra-species differences’ in the number of anthers are also noted (e.g. 41 to 61 in Aquilegia vulgaris, 23-45 in Ranunculus cassubicus. Pollen production can be up to 62 kg per ha for Ranunculus acer

  4. Charcoal anatomy of Brazilian species. I. Anacardiaceae.

    Science.gov (United States)

    Gonçalves, Thaís A P; Scheel-Ybert, Rita

    2016-01-01

    Anthracological studies are firmly advancing in the tropics during the last decades. The theoretical and methodological bases of the discipline are well established. Yet, there is a strong demand for comparative reference material, seeking for an improvement in the precision of taxonomic determination, both in palaeoecological and palaeoethnobotanical studies and to help preventing illegal charcoal production. This work presents descriptions of charcoal anatomy of eleven Anacardiaceae species from six genera native to Brazil (Anacardium occidentale, Anacardium parvifolium, Astronium graveolens, Astronium lecointei, Lithrea molleoides, Schinus terebenthifolius, Spondias mombin, Spondias purpurea, Spondias tuberosa, Tapirira guianensis, and Tapirira obtusa). They are characterized by diffuse-porous wood, vessels solitary and in multiples, tyloses and spiral thickenings sometimes present; simple perforation plates, alternate intervessel pits, rounded vessel-ray pits with much reduced borders to apparently simple; parenchyma paratracheal scanty to vasicentric; heterocellular rays, some with radial canals and crystals; septate fibres with simple pits. These results are quite similar to previous wood anatomical descriptions of the same species or genera. Yet, charcoal identification is more effective when unknown samples are compared to charred extant equivalents, instead of to wood slides.

  5. Charcoal anatomy of Brazilian species. I. Anacardiaceae

    Directory of Open Access Journals (Sweden)

    THAÍS A.P. GONÇALVES

    Full Text Available ABSTRACT Anthracological studies are firmly advancing in the tropics during the last decades. The theoretical and methodological bases of the discipline are well established. Yet, there is a strong demand for comparative reference material, seeking for an improvement in the precision of taxonomic determination, both in palaeoecological and palaeoethnobotanical studies and to help preventing illegal charcoal production. This work presents descriptions of charcoal anatomy of eleven Anacardiaceae species from six genera native to Brazil (Anacardium occidentale, Anacardium parvifolium, Astronium graveolens, Astronium lecointei, Lithrea molleoides, Schinus terebenthifolius, Spondias mombin, Spondias purpurea, Spondias tuberosa, Tapirira guianensis, and Tapirira obtusa. They are characterized by diffuse-porous wood, vessels solitary and in multiples, tyloses and spiral thickenings sometimes present; simple perforation plates, alternate intervessel pits, rounded vessel-ray pits with much reduced borders to apparently simple; parenchyma paratracheal scanty to vasicentric; heterocellular rays, some with radial canals and crystals; septate fibres with simple pits. These results are quite similar to previous wood anatomical descriptions of the same species or genera. Yet, charcoal identification is more effective when unknown samples are compared to charred extant equivalents, instead of to wood slides.

  6. Six New Record Species of Whiteflies (Hemiptera: Aleyrodidae) Infesting Morus alba in China

    Science.gov (United States)

    Wang, Ji-Rui; Song, Zao-Qin; Du, Yu-Zhou

    2014-01-01

    Abstract To determine the species of whiteflies occurring on mulberry, Morus alba L. (Rosales: Moraceae) in China, we collected samples in more than 87 sites in 16 provinces of China from 2008 to 2011. In total, 10 species, representing seven genera of the subfamily Aleyrodinae, were identified. Of these, six species are newly recorded on mulberry in China, namely, Aleuroclava ficicola Takahashi, Aleuroclava gordoniae (Takahashi), Aleurotrachelus camelliae (Kuwana), Bemisia afer (Priesner & Hosny), Bemisia tabaci Gennadius, and Pealius machili Takahashi. Information on the taxonomy, distribution, and host plants of the whitefly species found on mulberry in China, along with a brief description and illustrations of each species are provided. PMID:25368095

  7. Taxonomic hierarchy of the phylum Firmicutes and novel Firmicutes species originated from various environments in Korea.

    Science.gov (United States)

    Seong, Chi Nam; Kang, Joo Won; Lee, Ji Hee; Seo, So Yeon; Woo, Jung Jae; Park, Chul; Bae, Kyung Sook; Kim, Mi Sun

    2018-01-01

    This study assessed the taxonomic hierarchy of the phylum Firmicutes as well as elucidated the isolation and classification states of novel Firmicutes species isolated from Korean territory. The hierarchical classification system of the phylum Firmicutes has been developed since 1872 when the genus Bacillus was first reported and has been generally adopted since 2001. However, this taxonomic hierarchy is still being modified. Until Feb. 2017, the phylum Firmicutes consisted of seven classes (Bacilli, Clostridia, Erysipelotrichia, Limnochordia, Negativicutes, Thermolithobacteria, and Tissierellia), 13 orders, 45 families, and 421 genera. Firmicutes species isolated from various environments in Korea have been reported from 2000, and 187 species have been approved as of Feb. 2017. All Firmicutes species were affiliated with three classes (Bacilli, Clostridia, and Erysipelotrichia), four orders (Bacillales, Lactobacillales, Clostridiales, and Erysipelotrichales), 17 families, and 54 genera. A total of 173 species belong to the class Bacilli, of which 151 species were affiliated with the order Bacillales and the remaining 22 species with the order Lactobacillales. Twelve species belonging to the class Clostridia were affiliated within only one order, Clostridiales. The most abundant family was Bacillaceae (67 species), followed by the family Paenibacillaceae (56 species). Thirteen novel genera were created using isolates from the Korean environment. A number of Firmicutes species were isolated from natural environments in Korean territory. In addition, a considerable number of species were isolated from artificial resources such as fermented foods. Most Firmicutes species, belonging to the families Bacillaceae, Planococcaceae, and Staphylococcaceae, isolated from Korean fermented foods and solar salterns were halophilic or halotolerant. Firmicutes species were isolated from the whole territory of Korea, especially large numbers from Provinces Gyeonggi, Chungnam, and

  8. Chemotaxonomy of three genera of the Annonaceae family using self-organizing maps and {sup 13}C NMR data of diterpenes

    Energy Technology Data Exchange (ETDEWEB)

    Scotti, Luciana; Tavares, Josean Fechine; Silva, Marcelo Sobral da [Universidade Federal da Paraiba (UFPB), Joao Pessoa, PB (Brazil). Dept. de Ciencias Farmaceuticas; Falcao, Emanuela Viana; Silva, Luana de Morais e; Soares, Gabriela Cristina da Silva; Scotti, Marcus Tullius, E-mail: mtscotti@ccae.ufpb.br [Universidade Federal da Paraiba (UFPB), Rio Tinto, PB (Brazil). Dept. de Engenharia e Meio Ambiente

    2012-07-01

    The Annonaceae family is distributed throughout Neotropical regions of the world. In Brazil, it covers nearly all natural formations particularly Annona, Xylopia and Polyalthia and is characterized chemically by the production of sources of terpenoids (mainly diterpenes), alkaloids, steroids, polyphenols and, flavonoids. Studies from {sup 13}C NMR data of diterpenes related with their botanical occurrence were used to generate self-organizing maps. Results corroborate those in the literature obtained from morphological and molecular data for three genera and the model can be used to project other diterpenes. Therefore, the model produced can predict which genera are likely to contain a compound. (author)

  9. Copper toxicity to different field-collected cladoceran species: intra-and inter-species sensitivity

    International Nuclear Information System (INIS)

    Bossuyt, Bart T.A.; Janssen, Colin R.

    2005-01-01

    The acute copper sensitivity of 44 European freshwater cladocerans, from four families (Daphniidae, Bosminidae, Macrothricidae, Chydoridae) and 13 genera (Daphnia, Ctenodaphnia, Ceriodaphnia, Simocephalus, Scapholeberis, Bosmina, Acantholeberis, Alona, Acroperus, Chydorus, Eurycercus, Disparalona and Pleuroxus) were assayed. The 48-h EC 50 s of field-collected organisms tested in reconstituted standard laboratory water ranged from 5.3 to 70.6 μg Cu L -1 . Only among Ctenodaphnia were significant intra-species differences observed. Significant inter-species differences were noted among Alonina and Daphnia. Between all genera tested, a maximum of a 12-fold difference in copper sensitivity was noted. Most animals were more sensitive than a laboratory D. magna clone. A weak non-significant increasing trend was noted between mean cladoceran 48-h EC 50 and ambient copper concentration of the different aquatic systems, suggesting acclimation/adaptation in the field. A positive relationship was also observed between the 48-h EC 50 of the field-collected cladoceran species (without the Chydoridae family) and the size of the organisms. - Zooplankton living in natural waters are more sensitive to copper than laboratory animals

  10. Copper toxicity to different field-collected cladoceran species: intra-and inter-species sensitivity

    Energy Technology Data Exchange (ETDEWEB)

    Bossuyt, Bart T.A. [Laboratory of Environmental Toxicology and Aquatic Ecology, Ghent University, J. Plateaustraat 22, B-9000 Ghent (Belgium)]. E-mail: bart.bossuyt@ugent.be; Janssen, Colin R. [Laboratory of Environmental Toxicology and Aquatic Ecology, Ghent University, J. Plateaustraat 22, B-9000 Ghent (Belgium)

    2005-07-15

    The acute copper sensitivity of 44 European freshwater cladocerans, from four families (Daphniidae, Bosminidae, Macrothricidae, Chydoridae) and 13 genera (Daphnia, Ctenodaphnia, Ceriodaphnia, Simocephalus, Scapholeberis, Bosmina, Acantholeberis, Alona, Acroperus, Chydorus, Eurycercus, Disparalona and Pleuroxus) were assayed. The 48-h EC{sub 50}s of field-collected organisms tested in reconstituted standard laboratory water ranged from 5.3 to 70.6 {mu}g Cu L{sup -1}. Only among Ctenodaphnia were significant intra-species differences observed. Significant inter-species differences were noted among Alonina and Daphnia. Between all genera tested, a maximum of a 12-fold difference in copper sensitivity was noted. Most animals were more sensitive than a laboratory D. magna clone. A weak non-significant increasing trend was noted between mean cladoceran 48-h EC{sub 50} and ambient copper concentration of the different aquatic systems, suggesting acclimation/adaptation in the field. A positive relationship was also observed between the 48-h EC{sub 50} of the field-collected cladoceran species (without the Chydoridae family) and the size of the organisms. - Zooplankton living in natural waters are more sensitive to copper than laboratory animals.

  11. Species of Juglandaceae at Peter the Great Botanic Garden at Apothecaries Island

    Directory of Open Access Journals (Sweden)

    Firsov Gennadii

    2015-12-01

    Full Text Available The first exotic species of Juglandaceae family at Peter the Great Botanic Garden of the Komarov Botanical Institute RAS in Saint-Petersburg was Juglans regia - mentioned at M. M. Terechovskij ‘s Catalogue in 1796. Twenty five taxa from 4 genera have been tested since then: Carya - 6, Juglans - 14, Platycarya - 1, Pterocarya - 4. There are 14 taxa from 3 genera in modern collection: Carya - 2, Juglans - 9, Pterocarya - 3. All species besides Carya cordiformis and Juglans nigra produce fruits. Four species of Juglans (J. ailanthifolia, J. cinerea, J. cordiformis, J. mandshurica and its hybrids produce self-sowing. There are 2 species, Juglans ailanthifolia and Pterocarya pterocarpa, which are included into the Red Data Book of Russian Federation (2008. They need In situ and Ex situ conservation and may be recommended for Saint-Petersburg’s city planting. There are considerable prospects for both repeated introduction (Carya illinoensis and primary introduction (Juglans sigillata.

  12. Flora of the Mayacmas Mountains. [Listing of 679 species in the Geysers Geothermal Resource area

    Energy Technology Data Exchange (ETDEWEB)

    Neilson, J.A.

    1981-09-01

    This flora describes the plants that occur within the Mayacmas Mountain Range of northern California. It is the result of ten years of environmental assessment by the author in the Geysers Geothermal Resource area, located in the center of the Mayacmas Range. The flora includes notes on plant communities and ecology of the area, as well as habitat and collection data for most of the 679 species covered. Altogether 74 families, 299 genera and 679 species are included in the flora. The work is divided into eight subdivisions: trees; shrubs; ferns and fern allies; aquatic plants; tules, sedges, and rushes; lilies and related plants; dicot herbs; and grasses. Within each subdivision, family, genera and species are listed alphabetically. Keys are provided at the beginning of each subdivision. A unique combination of physical, environmental and geologic factors have resulted in a rich and diverse flora in the Mayacmas. Maps have been provided indicating known locations for species of rare or limited occurrence.

  13. THE ASIATIC SPECIES OF LINDENBERGIA Lehm. (Scrophulariaceae

    Directory of Open Access Journals (Sweden)

    B. PRIJANTO*

    1969-03-01

    Full Text Available Lindenbergia is represented in Asia by 7 species. Based on the hairiness oftheir ovaries L. muraria (Roxb. Briihl (= L. urticifolia Lehm. and L. indica(L. Vatke (= L. polyantha Benth. are reinstated as distinct species. I followBentham in including Lindenbergia in the tribe Gratioleae.Objection to the use of the aestivation of corolla as the only positivecharacter for distinguishing subfamilies of the Scrophulariaceae is put forward;it is shown that several genera (Lindenbergia, Isoplexis, Lagotis, Erinus, Frey-linia,, Phygelius and Mimulus considered to belong to one subfamily actuallyhave the aestivation character of the other subfamily.The occurrence of resupinatton of the flower in Dopatrium juncewm (Roxb.Buch.-Ham. ex Benth. is recorded for the first time.

  14. Estimating species richness and status of solitary bees and bumblebees in agricultural semi-natural habitats

    DEFF Research Database (Denmark)

    Calabuig, Isabel

    2000-01-01

    Estimation of Western Europe number of bee species varies between 2000 and 4500 (Williams 1995) but there are substantial indications of a decline in bee species in Europe and other regions. In Denmark, wild bee species richness, distribution, and abundance have not been studied in detail for about...... 75 years, and nothing is known about which species are potentially vulnerable or endangered. A rough estimate of solitary bees and bumblebees includes approximately 238 species (26 genera) and 29 species respectively. In a pan-trap survey of six kilometres of semi-natural habitats in a Danish...... agricultural landscape, 72 solitary bee species and 19 species of bumblebees were recorded, several of which are considered vulnerable or endangered in neighbouring countries. Nesting conditions for rare cavity-nesting species and the possible role of the semi-natural habitats as corridors for species...

  15. Phylogeny and new species of the Neotropical bee genus Paroxystoglossa Moure (Hymenoptera, Apoidea

    Directory of Open Access Journals (Sweden)

    Rodrigo Barbosa Gonçalves

    Full Text Available ABSTRACT Paroxystoglossa is a solitary, ground-nesting bee genus. It was revised in 1960 and currently includes nine species from Argentina, Brazil and Paraguay. The objectives of this contribution are to provide a morphological phylogeny for the group and to describe two new species: P. levigata n.sp. and P. mourella n.sp. Paroxystoglossa is monophyletic and three species groups are recognized, jocasta species group: (P. mourella n.sp., (P. brachycera, (P. jocasta, P. barbata, transversa species group: (P. transversa, P. levigata n.sp., and crossotos species group: (P. mimetica, (P. crossotos, P. seabrai, (P. andromache, P. spiloptera. The crossotos and transversa species groups were considered as sister groups. Interestingly Paroxystoglossa species have very similar male genital capsules an uncommon pattern among Augochlorini genera. The species groups have a widely redundant distribution indicating replication events in southeastern South America. An updated, illustrated key for species identification is also presented.

  16. Population Genomics of Paramecium Species.

    Science.gov (United States)

    Johri, Parul; Krenek, Sascha; Marinov, Georgi K; Doak, Thomas G; Berendonk, Thomas U; Lynch, Michael

    2017-05-01

    Population-genomic analyses are essential to understanding factors shaping genomic variation and lineage-specific sequence constraints. The dearth of such analyses for unicellular eukaryotes prompted us to assess genomic variation in Paramecium, one of the most well-studied ciliate genera. The Paramecium aurelia complex consists of ∼15 morphologically indistinguishable species that diverged subsequent to two rounds of whole-genome duplications (WGDs, as long as 320 MYA) and possess extremely streamlined genomes. We examine patterns of both nuclear and mitochondrial polymorphism, by sequencing whole genomes of 10-13 worldwide isolates of each of three species belonging to the P. aurelia complex: P. tetraurelia, P. biaurelia, P. sexaurelia, as well as two outgroup species that do not share the WGDs: P. caudatum and P. multimicronucleatum. An apparent absence of global geographic population structure suggests continuous or recent dispersal of Paramecium over long distances. Intergenic regions are highly constrained relative to coding sequences, especially in P. caudatum and P. multimicronucleatum that have shorter intergenic distances. Sequence diversity and divergence are reduced up to ∼100-150 bp both upstream and downstream of genes, suggesting strong constraints imposed by the presence of densely packed regulatory modules. In addition, comparison of sequence variation at non-synonymous and synonymous sites suggests similar recent selective pressures on paralogs within and orthologs across the deeply diverging species. This study presents the first genome-wide population-genomic analysis in ciliates and provides a valuable resource for future studies in evolutionary and functional genetics in Paramecium. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  17. Notes for genera: Ascomycota

    Czech Academy of Sciences Publication Activity Database

    Wijayawardene, N.N.; Hujslová, Martina

    2017-01-01

    Roč. 86, č. 1 (2017), s. 1-594 ISSN 1560-2745 Institutional support: RVO:61388971 Keywords : Classification * Pleomorphic fungi * Taxonomy Subject RIV: EE - Microbiology, Virology OBOR OECD: Microbiology Impact factor: 13.465, year: 2016

  18. Fish, fans and hydroids: host species of pygmy seahorses.

    Science.gov (United States)

    Reijnen, Bastian T; van der Meij, Sancia E T; van Ofwegen, Leen P

    2011-01-01

    An overview of the octocoral and hydrozoan host species of pygmy seahorses is provided based on literature records and recently collected field data for Hippocampus bargibanti, Hippocampus denise and Hippocampus pontohi. Seven new associations are recognized and an overview of the so far documented host species is given. A detailed re-examination of octocoral type material and a review of the taxonomic history of the alcyonacean genera Annella (Subergorgiidae) and Muricella (Acanthogorgiidae) are included as baseline for future revisions. The host specificity and colour morphs of pygmy seahorses are discussed, as well as the reliability of (previous) identifications and conservation issues.

  19. Parasites of domestic and wild animals in South Africa. XLIV. Fleas (Insecta : Siphonaptera : Pulicidae collected from 15 carnivore species

    Directory of Open Access Journals (Sweden)

    I.G. Horak

    2004-11-01

    Full Text Available Fleas were collected from 61 wild carnivores belonging to 13 species in various nature reserves and on farms, two feral domestic cats in a nature reserve and a domestic dog in the city of Johannesburg. Eleven flea species, including two subspecies of one of these, belonging to six genera were recovered. Amongst these only Ctenocephalides felis felis and Ctenocephalides felis strongylus are considered specific parasites of carnivores. The remaining ten species normally infest the prey animals of the various carnivores.

  20. Species diversity and distribution patterns of the ants of Amazonian Ecuador.

    Directory of Open Access Journals (Sweden)

    Kari T Ryder Wilkie

    2010-10-01

    Full Text Available Ants are among the most diverse, abundant and ecologically significant organisms on earth. Although their species richness appears to be greatest in the New World tropics, global patterns of ant diversity and distribution are not well understood. We comprehensively surveyed ant diversity in a lowland primary rainforest in Western Amazonia, Ecuador using canopy fogging, pitfall traps, baits, hand collecting, mini-Winkler devices and subterranean probes to sample ants. A total of 489 ant species comprising 64 genera in nine subfamilies were identified from samples collected in only 0.16 square kilometers. The most species-rich genera were Camponotus, Pheidole, Pseudomyrmex, Pachycondyla, Brachymyrmex, and Crematogaster. Camponotus and Pseudomyrmex were most diverse in the canopy, while Pheidole was most diverse on the ground. The three most abundant ground-dwelling ant genera were Pheidole, Solenopsis and Pyramica. Crematogaster carinata was the most abundant ant species in the canopy; Wasmannia auropunctata was most abundant on the ground, and the army ant Labidus coecus was the most abundant subterranean species. Ant species composition among strata was significantly different: 80% of species were found in only one stratum, 17% in two strata, and 3% in all three strata. Elevation and the number of logs and twigs available as nest sites were significant predictors of ground-dwelling ant species richness. Canopy species richness was not correlated with any ecological variable measured. Subterranean species richness was negatively correlated with depth in the soil. When ant species were categorized using a functional group matrix based on diet, nest-site preference and foraging ecology, the greatest diversity was found in Omnivorous Canopy Nesters. Our study indicates ant species richness is exceptionally high at Tiputini. We project 647-736 ant species in this global hotspot of biodiversity. Considering the relatively small area surveyed, this

  1. Exploring of the first recorded spider (Arachenida: Aranae) species of Sheringal, Khyber Pakhtunkhwa, Pakistan

    OpenAIRE

    Farzana Perveen; Numan Khan

    2015-01-01

    The spiders (Arthropoada: Arachenida) are one of the groups of grasping animals. Their carapaces are found on the dorsal side of the cephalothorax, which is an important characteristic of spiders. The present study was conducted to explore the first recorded spider species (nti=75) of Sheringal, Dir Upper (DU), Khyber Pakhtunkhwa (KP), Dir Upper, Khyber Pakhtunkhwa, Pakistan. The 10 genera with 10 species under 7 families were recorded from June 2013-July 2014. According to length of legs, th...

  2. Relationships within the Proteobacteria of plant pathogenic Acidovorax species and subspecies, Burkholderia species, and Herbaspirillum rubrisubalbicans by sequence analysis of 16S rDNA, numerical analysis and determinative tests.

    Science.gov (United States)

    Hu, F P; Young, J M; Triggs, C M; Park, D C; Saul, D J

    2001-12-01

    Sequence data for 16S rDNA of the type strains of Acidovorax avenae subsp. avenae, A. avenae subsp. cattleyae, A. avenae subsp. citrulli, A. konjaci and Herbaspirillum rubrisubalbicans were compared with GenBank library accessions of Burkholderia spp., Comamonas sp., Ralstonia solanacearum and Variovorax sp. Maximum Parsimony analysis produced two clusters: 1. Acidovorax spp., Comamonas sp., and Variovorax sp. (all in the Comamonadaceae), and 2. Burkholderia spp., Ralstonia solanacearum, and Herbaspirillum rubrisubalbicans. Maximum Likelihood analysis produced only one cluster (of the Comamonadaceae). Using nutritional and laboratory tests, all Acidovorax spp., Burkholderia spp., and Herbaspirillum rubrisubalbicans were discriminated in distinct clusters at the species level, and could be identified by selected determinative tests. There were no phenotypic tests constituted as a circumscription of the genera and which permitted the allocation of strains to genera. Strain identification as species allowed allocation to genera only by inference. The nomenclatural implications of these data are discussed.

  3. Flanged Bombardier beetles from Shanghai, China, with description of a new species in the genus Eustra Schmidt-Goebel (Coleoptera, Carabidae, Paussinae

    Directory of Open Access Journals (Sweden)

    Xiao-Bin Song

    2018-02-01

    Full Text Available Four paussine species belonging to three different genera are discovered in Shanghai. A new species, Eustra shanghaiensis Song, sp. n., is described, illustrated, and distinguished from the treated congeners. New distributional data or biological notes on Eustra chinensis Bänninger, 1949, Itamus castaneus Schmidt-Goebel, 1846, and Platyrhopalus davidis Fairmaire, 1886 are provided.

  4. Review of the genus Craspedolcus Enderlein sensu lato in China, with the description of a new genus and four new species (Hymenoptera, Braconidae, Braconinae)

    NARCIS (Netherlands)

    Li, Y.; Achterberg, van C.; Chen, X.-x.

    2017-01-01

    A new genus is split off the genus Craspedolcus Enderlein, 1920 (Hymenoptera, Braconidae, Braconinae): Maculibracon gen. n. with type species Maculibracon abruptus sp. n. The genus Craspedolcus Enderlein sensu stricto is redefined, a key to both genera and to their species in China, Thailand and

  5. Genome size of 14 species of fireflies (Insecta, Coleoptera, Lampyridae

    Directory of Open Access Journals (Sweden)

    Gui-Chun Liu

    2017-11-01

    Full Text Available Eukaryotic genome size data are important both as the basis for comparative research into genome evolution and as estimators of the cost and difficulty of genome sequencing programs for non-model organisms. In this study, the genome size of 14 species of fireflies (Lampyridae (two genera in Lampyrinae, three genera in Luciolinae, and one genus in subfamily incertae sedis were estimated by propidium iodide (PI-based flow cytometry. The haploid genome sizes of Lampyridae ranged from 0.42 to 1.31 pg, a 3.1-fold span. Genome sizes of the fireflies varied within the tested subfamilies and genera. Lamprigera and Pyrocoelia species had large and small genome sizes, respectively. No correlation was found between genome size and morphological traits such as body length, body width, eye width, and antennal length. Our data provide additional information on genome size estimation of the firefly family Lampyridae. Furthermore, this study will help clarify the cost and difficulty of genome sequencing programs for non-model organisms and will help promote studies on firefly genome evolution.

  6. Antarctic glossopterid diversity on a local scale: the presence of multiple megasporophyll genera, Upper Permian, Mt. Achernar, Transantarctic Mountains, Antarctica.

    Science.gov (United States)

    Ryberg, Patricia E; Taylor, Edith L; Taylor, Thomas N

    2012-09-01

    The glossopterids are a group of plants that thrived during a time of global warming similar to what is happening on the Earth today as well as the transition from archaic plant groups to the ancestors of modern groups. The diversity of the glossopterid clade is based on the megasporangiate structures assigned to the group, because the vegetative and pollen-bearing structures vary little. The presence of numerous reproductive genera from a single Upper Permian locality in the central Transantarctic Mountains provides important data on local glossopterid diversity in Antarctica. Impression/compression fossils were imaged with a Leica 5000C digital camera on a dissecting microscope or a Fujifilm FinePix S1pro digital camera. Two megasporangiate taxa are described: Scutum leiophyllum, which represents the first confirmed record of the genus in Antarctica, and Lidgettoniopsis ramulus, a new morphology consisting of a pinnate structure with oppositely attached megasporophylls. Plumsteadia ovata specimens indicate that this genus can be larger than previously recorded and illustrate the vegetative surface with a distinct midrib. The presence of a laminar, multiovulate structure and a pinnate structure at the same site indicates that local-level glossopterid diversity in Antarctica is greater than previously hypothesized. The discovery of a new megasporophyll morphology in Antarctica (confirming the presence of three distinctive morphologies on the continent) shows that Antarctic glossopterid heterogeneity is on a par with other Gondwanan continents. The diversity of the Antarctic landscape reveals that high polar latitudes can sustain a diverse ecosystem during times of global warming.

  7. New Species of Orchids (Orchidaceae in the Flora of Vietnam

    Directory of Open Access Journals (Sweden)

    Leonid V. AVERYANOV

    2016-11-01

    Full Text Available This paper summarizes results of joint efforts of professional botanists and orchid enthusiasts on studies of Vietnamese native orchids during years 2013–2016. It provides new original data about the discovery of 1 genus (Grammatophyllum Blume and 29 orchid species new for the flora of Vietnam. Valid name, main synonyms, data on type, ecology, phenology, estimated IUCN Red List status, distribution, studied specimens, as well as brief taxonomic and biological notes are provided for each species and varieties. Eight species (Bidupia khangii, Bulbophyllum striatulum, B. tipula, Cleisostoma dorsisacculatum, Cymbidium repens, Dendrobium congianum, Flickingeria xanthocheila, Podochilus rotundipetala and two varieties (Phreatia densiflora var. vietnamensis, P. formosana var. continentalis are described as new for science. One combination (Bulbophyllum bicolor var. funingense is proposed. An illustrated annotated list of all studied species and varieties is arranged in alphabetical order. Including present data, the known orchid flora of Vietnam comprises currently at least 1210 documented species from 172 genera.

  8. Biodiversity of Aspergillus species in some important agricultural products

    DEFF Research Database (Denmark)

    Perrone, Giancarlo; Susca, A.,; Cozzi, G.

    2007-01-01

    The genus Aspergillus is one of the most important filamentous fungal genera. Aspergillus species are used in the fermentation industry, but they are also responsible of various plant and food secondary rot, with the consequence of possible accumulation of mycotoxins. The aflatoxin producing A....... flavus and A. parasiticus, and ochratoxinogenic A. niger, A. ochraceus and A. carbonarius species are frequently encountered in agricultural products. Studies on the biodiversity of toxigenic Aspergillus species is useful to clarify molecular, ecological and biochemical characteristics of the different...... occurring in agricultural fields. Altogether nine different black Aspergillus species can be found on grapes which are often difficult to identify with classical methods. The polyphasic approach used in our studies led to the identification of three new species occurring on grapes: A. brasiliensis, A...

  9. Cladistic analysis of the Neotropical genera Cerqueirellum Py-Daniel, 1983, Coscaroniellum Py-Daniel, 1983 and Shelleyellum Py-Daniel & Pessoa, 2005 (Diptera: Simuliidae Análise cladística dos gêneros neotropicais Cerqueirellum Py-Daniel, 1983, Coscaroniellum Py-Daniel, 1983 e Shelleyellum Py-Daniel & Pessoa, 2005 (Diptera: Simuliidae

    Directory of Open Access Journals (Sweden)

    Felipe Arley Costa Pessoa

    2008-01-01

    Full Text Available Females of simuliid black flies are haematophagous insects and vectors of several pathogenic agents of human diseases such as the filarial worms Mansonella ozzardi and Onchocerca volvulus. The genus Cerqueirellum is one of the most important groups of vectors of mansonellosis and onchocerciasis diseases in South America, and the genera Coscaroniellum and Shelleyellum are phylogenetically close to Cerqueirellum. There is not yet an agreement among authors about the generic classification of the species which compose these three genera, being all lumped by some taxonomists within Psaroniocompsa. A cladistic analysis of all species of Coscaroniellum, Cerqueirellum, and Shelleyellum, based on 41 morphological characters were done. Species closely related to Cerqueirellum were included in the analysis. The genera Cerqueirellum, Coscaroniellum and Shelleyellum were demonstrated as consistent basal entities and well-defined monophyletic clades.As fêmeas de piuns ou borrachudos da família Simuliidae são hematófagas e vetoras de diversos patógenos, destacando-se os vermes filarióides Mansonella ozzardi e Onchocerca volvulus. Dentre os grupos supra-específicos que são vetores de mansonelose e oncocercose na América do Sul, destaca-se o gênero Cerqueirellum. Os gêneros Coscaroniellum e Shelleyellum são filogeneticamente muito próximos a Cerqueirellum. Não existia concordância quanto à validade de Cerqueirellum e Coscaroniellum como clados supra-específicos, sendo ambos os gêneros incluídos, por uma escola taxonômica, como grupos de espécies em Psaroniocompsa. Neste trabalho é feita uma análise filogenética baseada em caracteres morfológicos dos três gêneros.. Os gêneros Cerqueirellum, Coscaroniellum e Shelleyellum. apresentaram-se como entidades basais válidas, consistentes e monofiléticas.

  10. Karyotypes, constitutive heterochromatin, and genomic DNA values in the blowfly genera Chrysomya, Lucilia, and Protophormia (Diptera: Calliphoridae).

    Science.gov (United States)

    Ullerich, Fritz-Helmut; Schöttke, Michael

    2006-06-01

    The karyotypes and C-banding patterns of Chrysomya species C. marginalis, C. phaonis, C. pinguis, C. saffranea, C. megacephala (New Guinean strain), Lucilia sericata, and Protophormia terraenovae are described. All species are amphogenic and have similar chromosome complements (2n = 12), including an XY-XX sex-chromosome pair varying in size and morphology between species. Additionally, the C-banding pattern of the monogenic species Chrysomya albiceps is presented. The DNA contents of these and of further species Chrysomya rufifacies, Chrysomya varipes, and Chrysomya putoria were assessed on mitotic metaphases by Feulgen cytophotometry. The average 2C DNA value of the male genomes ranged from 1.04 pg in C. varipes to 2.31 pg in C. pinguis. The DNA content of metaphase X chromosomes varied from 0.013 pg (= 1.23% of the total genome) in C. varipes to 0.277 pg (12.20%) in L. sericata; that of Y chromosomes ranged from 0.003 pg (0.27%) in C. varipes to 0.104 pg (5.59%) in L. sericata. In most species, the corresponding 5 large chromosome pairs showed similar relative DNA contents. The data suggest that the interspecific DNA differences in most species are mainly due to quantitative variation of (repetitive) sequences lying outside the centromeric heterochromatin blocks of the large chromosomes. The results are also discussed with regard to phylogenetic relationships of some species.

  11. Being and «genera» of being in Ancient Stoicism. A relevant ontological distinction applied to ethics and action theory

    Directory of Open Access Journals (Sweden)

    Marcelo D. Boeri

    2014-11-01

    Full Text Available This paper is focused on the Stoic doctrine of genera of being and the way in which such a doctrine appears to function in ethics and in action theory. In section I, the soul-body problem in Aristotle is briefly discussed; I argue that, in order to overcome the difficulties of the relation between soul and body in a psychology maintaining that the soul is an immaterial entity, the Stoics were willing to endorse a physicalist psychology. Second, I offer an account of the Stoic ontology and attempt to show the role of each genera of being in such an ontology. In section III I return to the Stoic genera of being but concentrating on the suitable connections to make more persuasive the thesis that the Stoic genera of being should play a role in ethics and in action theory. Finally, in section IV I present some concluding remarks.

  12. A comparison of the development and metabolic activity of mycorrhizas formed by arbuscular mycorrhizal fungi from different genera on two tropical forage legumes

    NARCIS (Netherlands)

    Boddington, C.L.; Dodd, J.C.

    1998-01-01

    Two glasshouse experiments were done to assess the development and metabolic activity of mycorrhizas formed by isolates of arbuscular mycorrhizal fungi (AMF) from three different genera, Acaulospora, Gigaspora and Glomus on either Pueraria phaseoloides L. or Desmodium ovalifolium L. plants. The

  13. Earthworms of the 'acaecate' Pheretima group in Vietnam (Oligochaeta: Megascolecidae), with description of a new species from the Mekong delta.

    Science.gov (United States)

    Nguyen, Tung T; Tran, Binh T T; Nguyen, Anh D

    2014-09-22

    The 'acaecate' Pheretima group from Vietnam is revised, with description of a new species, Polypheretima mekongmontis sp. nov. A total of 18 species of three genera, Metapheretima Michaelsen, 1928, Planapheretima Michaelsen, 1934, and Polypheretima Michaelsen, 1934 has been recorded from Vietnam. Caecate species of Planapheretima are included here as well. Planapheretima arboricola (Rosa, 1890), Pl. lacertina (Chen, 1946), Pl. tenebrica (Chen, 1946), Polypheretima elongata (Perrier, 1872), and Po. taprobanae (Beddard, 1892) are originally recorded from other countries; all remaining species are native to Vietnam. The species Polypheretima tani (Thai, 1996) and Po. tiencanhensis (Pham, 1995) are transferred to the genus Metapheretima. A key to species and distribution maps are also presented.

  14. Notes on Michael Schülke's pselaphine collections from China. - Tyrini. I. genera Labomimus Sharp, Linan Hlaváč and Pselaphodes Westwood (Coleoptera, Staphylinidae, Pselaphinae).

    Science.gov (United States)

    Yin, Zi-Wei; Li, Li-Zhen

    2012-01-01

    This paper is the first of a series that deals with Dr. Michael Schülke's collection of Pselaphinae from China. The tyrine genera Labomimus Sharp, Linan Hlaváč and Pselaphodes Westwood are chosen for the first part. The study revealed fourteen new species, all described and illustrated: Labomimus cognatus Yin & Li, sp. n. (Yunnan), Labomimus dabashanus Yin & Li, sp. n. (Hubei, Shaanxi), Labomimus mirus Yin & Li, sp. n. (Yunnan), Labomimus paratorus Yin & Li, sp. n. (Shaanxi), Labomimus sarculus Yin & Li, sp. n. (Yunnan), Labomimus schuelkei Yin & Li, sp. n. (Shaanxi), Labomimus vespertilio Yin & Li, sp. n. (Yunnan), Linan tendothorax Yin & Li, sp. n. (Yunnan), Pselaphodes distincticornis Yin & Li, sp. n. (Yunnan), Pselaphodes erlangshanus Yin & Li, sp. n. (Sichuan), Pselaphodes flexus Yin & Li, sp. n. (Yunnan), Pselaphodes tibialis Yin & Li, sp. n. (Yunnan), Pselaphodes venustus Yin & Li, sp. n. (Yunnan) and Pselaphodes zhongdianus Yin & Li, sp. n. (Yunnan). Pselaphodes jizushanus Yin, Li & Zhao is recorded from a new locality in Yunnan and its aedeagus is newly illustrated; new province records for Pselaphodes nomurai Yin, Li & Zhao is provided. Labomimus torus (Yin, Li & Zhao), comb. n. is moved from Pselaphodes after an examination of the holotype. Species represented only by unassociated females are listed with label data.

  15. [Diversity of Bacillus species inhabiting on the surface and endophyte of lichens collected from Wuyi Mountain].

    Science.gov (United States)

    Ge, Cibin; Liu, Bo; Che, Jianmei; Chen, Meichun; Liu, Guohong; Wei, Jiangchun

    2015-05-04

    The present work reported the isolation, identification and diversity of Bacillus species colonizing on the surface and endophyte in lichens collected from Wuyi Mountain. Nine lichen samples of Evernia, Stereocaulon, Menegazzia and other 6 genera belonging to 7 families were collected from Wuyi mountain nature reserve. The bacillus-like species colonizing on the surface and endophyte in these lichens were isolated and identified by 16S rRNA gene sequence analysis. There was no bacillus-like species isolated from Evernia, Ramalina and Lecarona. A total of 34 bacillus-like bacteria were isolated from another 6 lichen samples. These bacteria were identified as 24 species and were classified into Bacillus, Paenibacillus, Brevibacillus, Lysinibacillus and Viridiibacillus. Paenibacillus and Bacillus are the dominant genera, and accounting for 41. 2% and 35. 3% of all isolated bacteria respectively. Brevibacillus, Lysinibacillus and Viridiibacillu were first reported being isolated from lichens. There were different species and quantity of bacillus colonizing on the surface and endophyte in different lichens. The quantity of bacillus colonizing on the surface of Physcia was more than 3.85 x 10(6) cfu/g and was the largest in the isolated bacteria, while the species of bacillus colonizing on the surface and endophyte in Stereocaulon was the most abundant. Most of the isolated bacteria were colonizing on (in) one lichen genera, but Paenibacillus taichungensis, Paenibacillus odorifer, Brevibacillus agri, Lysinibacillus xylanilyticus was respectively colonizing on (in) 2-3 lichen genera and Bacillus mycoides was colonizing on (in) Menegazzia, Cladonia Physcia, and Stereocaulon. There are species and quantity diversity of bacillus colonizing on (in) lichens.

  16. A Preliminary Survey of Species Composition of Termites (Insecta: Isoptera) in Samunsam Wildlife Sanctuary, Sarawak.

    Science.gov (United States)

    Jamil, Norsyarizan; Ismail, Wan Nurainie Wan; Abidin, Siti Shamimi; Amaran, Mazdan Ali; Hazali, Ratnawati

    2017-07-01

    A survey on termite species composition was conducted in Samunsam Wildlife Sanctuary, Sarawak in February 2015. Overall 19 species of termite belonging to 13 genera and 8 subfamilies was found in the sanctuary. It was recorded the subfamily of Termitinae had the highest number of species (6 species, equal to 31.58% of total species), followed by Nasutermitinae (3 species, 15.79%), Macrotermitinae, Amitermitinae, Rhinotermitinae, Coptotermitinae, (2 species, 10.53% respectively), and Heterotermitinae, Termitogetoninae (1 species, 5.26% respectively). Since this rapid survey is the first termite assemblage representation in Samunsam Wildlife Sanctuary, the preliminary result may serve as the baseline data for termite composition in the area. Therefore, a whole coverage for the area within this sanctuary would definitely increase the number of termite species found in the sanctuary.

  17. Savanna ant species richness is maintained along a bioclimatic gradient of increasing latitude and decreasing rainfall in northern Australia

    DEFF Research Database (Denmark)

    Andersen, Alan N.; Del Toro, Israel; Parr, Catherine L.

    2015-01-01

    of 246 species from 37 genera. Mean observed species richness pooled across sampling periods was similar at sand (85.4) and loam (82.2) sites, but was less than half this at clay sites (40.0). Ant communities were also compositionally distinct on clay soils compared with sands and loams. Individual...... genera showed variable diversity patterns, ranging from a linear increase to a linear decrease in species richness along the NATT. However, total species richness was relatively uniform along the gradient. Patterns of ant species turnover were consistent with previously recognized biogeographical......Aim: Using a standardized sampling protocol along a 600-km transect in northern Australia, we tested whether ant diversity within a single biome, tropical savanna, decreases with increasing latitude (as a surrogate of temperature) and decreasing rainfall, as is expected for biodiversity in general...

  18. Taxonomic reassessment of two Indian shieldtail snakes in the Uropeltis ceylanicus species group (Reptilia: Uropeltidae

    Directory of Open Access Journals (Sweden)

    S.R. Ganesh

    2014-01-01

    Full Text Available Uropeltis is the most speciose of all shieldtail snake (uropeltid genera, particularly in India, and has been bedeviled by a complex and intricate taxonomic history, with several weakly established synonyms and widely disjunct geographic ranges. Our present work on two Indian Uropeltis species revealed greater species diversity than what is currently recognised. We elevate Uropeltis arcticeps madurensis to species level, and revive Silybura shorttii (in the combination Uropeltis shorttii from the subjective synonymy of U. ceylanicus. We provide differential diagnoses, descriptions of examined material and comparisons with similar species based on an examination of voucher specimens as well as fresh, uncollected topotypes documented in the field.

  19. Inventory of species and cultivars potentially valuable for forest/biomass production

    Energy Technology Data Exchange (ETDEWEB)

    Lavoie, G

    1981-01-01

    To prepare a guide for experiments in mini-rotation or short rotation forest production, potentially valuable species and cultivars have been inventoried. In this text, 288 species are listed under 31 genera, 27 deciduous and 4 coniferous. This partial inventory was made for the Northern Hemisphere and different climates, ranging from the tropical zone to the cold temperate zone. To be included a species had to satisfy the following conditions: ease of established and rapid juvenile growth. The list of species and cultivars is given in alphabetical order. 55 references.

  20. Global warming will reshuffle the areas of high prevalence and richness of three genera of avian blood parasites.

    Science.gov (United States)

    Pérez-Rodríguez, Antón; de la Hera, Iván; Fernández-González, Sofía; Pérez-Tris, Javier

    2014-08-01

    The importance of parasitism for host populations depends on local parasite richness and prevalence: usually host individuals face higher infection risk in areas where parasites are most diverse, and host dispersal to or from these areas may have fitness consequences. Knowing how parasites are and will be distributed in space and time (in a context of global change) is thus crucial from both an ecological and a biological conservation perspective. Nevertheless, most research articles focus just on elaborating models of parasite distribution instead of parasite diversity. We produced distribution models of the areas where haemosporidian parasites are currently highly diverse (both at community and at within-host levels) and prevalent among Iberian populations of a model passerine host: the blackcap Sylvia atricapilla; and how these areas are expected to vary according to three scenarios of climate change. On the basis of these models, we analysed whether variation among populations in parasite richness or prevalence are expected to remain the same or change in the future, thereby reshuffling the geographic mosaic of host-parasite interactions as we observe it today. Our models predict a rearrangement of areas of high prevalence and richness of parasites in the future, with Haemoproteus and Leucocytozoon parasites (today the most diverse genera in blackcaps) losing areas of high diversity and Plasmodium parasites (the most virulent ones) gaining them. Likewise, the prevalence of multiple infections and parasite infracommunity richness would be reduced. Importantly, differences among populations in the prevalence and richness of parasites are expected to decrease in the future, creating a more homogeneous parasitic landscape. This predicts an altered geographic mosaic of host-parasite relationships, which will modify the interaction arena in which parasite virulence evolves. © 2014 John Wiley & Sons Ltd.

  1. GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana

    OpenAIRE

    Brousseau, Louise; Baraloto, Christopher

    2016-01-01

    The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification. Here, we introduce an original mult...

  2. Prevalent bacterial species and novel phylotypes in advanced noma lesions.

    Science.gov (United States)

    Paster, B J; Falkler Jr, W A; Enwonwu, C O; Idigbe, E O; Savage, K O; Levanos, V A; Tamer, M A; Ericson, R L; Lau, C N; Dewhirst, F E

    2002-06-01

    The purpose of this study was to determine the bacterial diversity in advanced noma lesions using culture-independent molecular methods. 16S ribosomal DNA bacterial genes from DNA isolated from advanced noma lesions of four Nigerian children were PCR amplified with universally conserved primers and spirochetal selective primers and cloned into Escherichia coli. Partial 16S rRNA sequences of approximately 500 bases from 212 cloned inserts were used initially to determine species identity or closest relatives by comparison with sequences of known species or phylotypes. Nearly complete sequences of approximately 1,500 bases were obtained for most of the potentially novel species. A total of 67 bacterial species or phylotypes were detected, 25 of which have not yet been grown in vitro. Nineteen of the species or phylotypes, including Propionibacterium acnes, Staphylococcus spp., and the opportunistic pathogens Stenotrophomonas maltophilia and Ochrobactrum anthropi were detected in more than one subject. Other known species that were detected included Achromobacter spp., Afipia spp., Brevundimonas diminuta, Capnocytophaga spp., Cardiobacterium sp., Eikenella corrodens, Fusobacterium spp., Gemella haemoylsans, and Neisseria spp. Phylotypes that were unique to noma infections included those in the genera Eubacterium, Flavobacterium, Kocuria, Microbacterium, and Porphyromonas and the related Streptococcus salivarius and genera Sphingomonas and TREPONEMA: Since advanced noma lesions are infections open to the environment, it was not surprising to detect species not commonly associated with the oral cavity, e.g., from soil. Several species previously implicated as putative pathogens of noma, such as spirochetes and Fusobacterium spp., were detected in at least one subject. However, due to the limited number of available noma subjects, it was not possible at this time to associate specific species with the disease.

  3. Diversity and habitat relationships of hypogeous fungi. III. Factors influencing the occurrence of fire-adapted species

    Science.gov (United States)

    Andrew W. Claridge; James M. Trappe; Douglas J. Mills; Debbie L. Claridge

    2009-01-01

    Among the huge array of hypogeous ectomycorrhizal fungi so far documented from Australia, six genera and more than 30 species occur within the family Mesophelliaceae, all of which show various adaptations for surviving in fire-prone landscapes. These mostly endemic fungi are critical to postfire reestablishment of regenerating vegetation, and their fruit-bodies provide...

  4. Potential species distribution and richness of ixodidae ticks associated with wild vertebrates from Michoacán, Mexico

    NARCIS (Netherlands)

    Vargas-Sandoval, Margarita; Priego-Santander, Angel G.; Larrazabal de la Via, Alejandra Patricia; Sosa-Gutiérrez, Carolina G.; Lara-Chávez, Blanca; Avila-Val, Teresita

    2014-01-01

    Ticks are regarded as the most relevant vectors of disease-causing pathogens in domestic and wild animals. The diversity of Ixodidae is known for a very small number of genera. Ixodes are repre- sented by 26 species, and in 2007 the first reported ticks vectors in Mexico for the causal agent of Lyme

  5. Fouling Bryozoa from some Alexandria harbours, EGYPT. (I Erect species

    Directory of Open Access Journals (Sweden)

    KH.M. ABDEL-SALAM

    2008-05-01

    Full Text Available The fouling erect Bryozoa settled on polystyrene test panels immersed half a meter deep in the water of Abu Qir Harbour, the Eastern Harbour and El-Dekheila Harbour were studied. The present study yields 5 species of erect bryozoa. These areAmathia pruvoti, Zoobotryon verticillatum, Bowerbankia gracilis,Bugula neritina and Bugula stolonifera. The first three ones pertain to 3 genera of the family Vesiculariidae belonging to suborder the Stolonifera; while the other two species affiliate to the genus Bugula belonging to the family Bugulidae of suborder Anasca. The present record of Amathia pruvoti is the first from the Egyptian Mediterranean waters. A re-description, supplied with full structural illustrations of the recorded species is given. Moreover, the temporal and spatial distributions of the species recorded are encountered.

  6. DataTri, a database of American triatomine species occurrence

    Science.gov (United States)

    Ceccarelli, Soledad; Balsalobre, Agustín; Medone, Paula; Cano, María Eugenia; Gurgel Gonçalves, Rodrigo; Feliciangeli, Dora; Vezzani, Darío; Wisnivesky-Colli, Cristina; Gorla, David E.; Marti, Gerardo A.; Rabinovich, Jorge E.

    2018-04-01

    Trypanosoma cruzi, the causative agent of Chagas disease, is transmitted to mammals - including humans - by insect vectors of the subfamily Triatominae. We present the results of a compilation of triatomine occurrence and complementary ecological data that represents the most complete, integrated and updated database (DataTri) available on triatomine species at a continental scale. This database was assembled by collecting the records of triatomine species published from 1904 to 2017, spanning all American countries with triatomine presence. A total of 21815 georeferenced records were obtained from published literature, personal fieldwork and data provided by colleagues. The data compiled includes 24 American countries, 14 genera and 135 species. From a taxonomic perspective, 67.33% of the records correspond to the genus Triatoma, 20.81% to Panstrongylus, 9.01% to Rhodnius and the remaining 2.85% are distributed among the other 11 triatomine genera. We encourage using DataTri information in various areas, especially to improve knowledge of the geographical distribution of triatomine species and its variations in time.

  7. On some minuscule spiders (Araneae: Theridiosomatidae, Symphytognathidae) from the Chocó region of Ecuador with the description of ten new species.

    Science.gov (United States)

    Dupérré, Nadine; Tapia, Elicio

    2017-11-01

    The spider families Theridiosomatidae and Symphytognathidae found in the Chocó region of Ecuador are examined, a total of 16 and 69 adult specimens were collected respectively in a series of expeditions. In the family Theridiosomatidae, eight new species are described in four different genera; Chthonos kuyllur n. sp.; Naatlo mayzana n. sp.; Ogulnius laranka n. sp., O. paku n. sp.; Theridiosoma ankas n. sp., T. esmeraldas n. sp., T. kullki n. sp., and T. sacha n. sp. We present the first record of the family Symphytognathidae for Ecuador with the description of two new species in two different genera: Anapistula equatoriana n. sp. and Symphytognatha cabezota n. sp.

  8. Indonemoura annamensis-a new species of stonefly from Vietnam (Plecoptera: Nemouridae).

    Science.gov (United States)

    Fochetti, Romolo; Ceci, Massimo

    2016-06-07

    The amphinemurine genus Indonemoura Baumann (1975) was proposed for species previously included in the genera Protonemura Kempny and Nemoura Latreille. Baumann (1975) designated P. indica Kimmins, 1947 (in Kimmins 1946) as the type species. He also transferred 14 additional species from Protonemura and Nemoura into this genus. The genus is distributed mainly in the Oriental region (only one species from Tibet, close to the eastern border of the Palaearctic Region) and many new species have been added in the last decades (Zwick & Sivec 1980; Shimizu 1994a & b; Zhu et al. 2002; Li et al. 2005; Li & Yang 2005, 2006; Wang et al. 2006; Sivec & Stark 2010) including presently 53 species (DeWalt et al. 2009). Sivec & Stark (2010) first described three Indonemoura species from Vietnam, I. angulata, I. clavata, and I. tricantha. These three species are the only Indonemoura presently known for Vietnam.

  9. DNA barcoding commercially important fish species of Turkey.

    Science.gov (United States)

    Keskın, Emre; Atar, Hasan H

    2013-09-01

    DNA barcoding was used in the identification of 89 commercially important freshwater and marine fish species found in Turkish ichthyofauna. A total of 1765 DNA barcodes using a 654-bp-long fragment of the mitochondrial cytochrome c oxidase subunit I gene were generated for 89 commercially important freshwater and marine fish species found in Turkish ichthyofauna. These species belong to 70 genera, 40 families and 19 orders from class Actinopterygii, and all were associated with a distinct DNA barcode. Nine and 12 of the COI barcode clusters represent the first species records submitted to the BOLD and GenBank databases, respectively. All COI barcodes (except sequences of first species records) were matched with reference sequences of expected species, according to morphological identification. Average nucleotide frequencies of the data set were calculated as T = 29.7%, C = 28.2%, A = 23.6% and G = 18.6%. Average pairwise genetic distance among individuals were estimated as 0.32%, 9.62%, 17,90% and 22.40% for conspecific, congeneric, confamilial and within order, respectively. Kimura 2-parameter genetic distance values were found to increase with taxonomic level. For most of the species analysed in our data set, there is a barcoding gap, and an overlap in the barcoding gap exists for only two genera. Neighbour-joining trees were drawn based on DNA barcodes and all the specimens clustered in agreement with their taxonomic classification at species level. Results of this study supported DNA barcoding as an efficient molecular tool for a better monitoring, conservation and management of fisheries. © 2013 John Wiley & Sons Ltd.

  10. A checklist of the cicadas (Hemiptera: Cicadidae) of Hainan Island, China, with description of a new species.

    Science.gov (United States)

    Yang, Mingsheng; Wei, Cong

    2013-10-29

    A total of 54 cacada species, belonging to 28 genera, nine tribes and three subfamilies of the family Cicadidae, are identified to comprise the cicada fauna of Hainan Island, based on the examination of material collected between 2007 and 2011. One species, Semia hainanensis sp. n., is described as new to science. Nine species are recorded as new to Hainan Island, of which two species, Pomponia subtilita Lee, 2009 and Becquartina bleuzeni Boulard, 2005, are reported for the first time from China. In addition, six species formerly recorded from Hainan are removed from the list of Hainan cicadas. Taxonomic remarks and information on geographic distributions are also provided.

  11. New Report of Two Species of Crabs, Cycloes granulosa and Pugettia vulgaris (Crustacea: Decapoda Collected from Korea

    Directory of Open Access Journals (Sweden)

    Yang, Kea Cheong

    2015-07-01

    Full Text Available Two species of crabs, Cycloes granulosa and Pugettia vulgaris, are described and illustrated for the first time in Korea. The former is the first species of calappoid genus Cycloes and characterized by having a minute lateral spine on the margin of carapace. The latter is a species of majoid crab and similar to P. pellucens. However, it can be distinguished by shorter rostral spines, a smaller hepatic spine, and a carapace entirely covered with short setae. In Korea the calappoid crab now includes seven species of three genera (Calappa, Mursia, and Cycloes and the majoid genus Pugettia consists of six species.

  12. Endangered Species Day | Endangered Species Coalition

    Science.gov (United States)

    Annual Top 10 Report Protecting the Endangered Species Act Wildlife Voices Stand for Wolves Endangered Campaigns Wildlife Voices Protecting the Endangered Species Act Annual Top 10 Report Endangered Species Day Stand for Wolves Vanishing BOOK: A Wild Success The Endangered Species Act at 40 Endangered Species The

  13. Origin and diversification of hoverflies: a revision of the genera Asarkina and Allobaccha – A BIG4 Consortium PhD project

    Directory of Open Access Journals (Sweden)

    Trevor Burt

    2017-08-01

    Full Text Available This BIG4 PhD project involves the overall taxonomic revision of the genera Allobaccha Curran and Asarkina Macquart (Diptera: Syrphidae. The revisions will be divided by biogeographic region (Afrotropical and Indomalayan and published accordingly. The publications will be collated as a thesis for submission to the University of Bonn (Rheinische Friedrich-Wilhelms-Universität Bonn, Germany doctoral program of biology. The goal of this project is to resolve alpha taxonomy and to infer the phylogenetic placement of these genera within the Syrphidae using Next-Generation Sequencing and Anchored Hybrid Enrichment techniques. The techniques undertaken in this project will be applied to future systematic problems in Diptera and testing future phylogenetic hypotheses.

  14. Generic revision and species classification of the Microdontinae (Diptera, Syrphidae

    Directory of Open Access Journals (Sweden)

    Menno Reemer

    2013-04-01

    Full Text Available With 552 species group names available (excluding misspellings, the Microdontinae constitute the smallest of the three subfamilies of Syrphidae. Paradoxically, this subfamily is taxonomically the least organized of the three: 388 species names were previously classified in a single genus, Microdon Meigen, 1803. The present paper introduces a new generic classification of the Microdontinae, relying partly on the results of phylogenetic analyses of morphological and molecular data as published in other papers, and partly on examination of primary type specimens of 347 taxa, plus additional material, and original descriptions. A total number of 67 genus group names (excluding misspellings are evaluated, redescribed, diagnosed and discussed, with several implications for their taxonomic status. Of these, 43 names are considered as valid genera, 7 as subgenera, 17 as synonyms. Two generic names (Ceratoconcha Simroth, 1907, Nothomicrodon Wheeler, 1924 are left unplaced, because they are known from immature stages only and cannot be reliably associated with taxa known from adults. The following 10 new genera are described by Reemer: Domodon, Heliodon, Laetodon, Menidon, Mermerizon, Metadon, Peradon, Piruwa, Sulcodon and Thompsodon. A key to all genera, subgenera and species groups is given. A total number of 26 new species are described in the following genera: Archimicrodon Hull, 1945, Ceratrichomyia Séguy, 1951, Domodon, Furcantenna Cheng, 2008, Heliodon, Indascia Keiser, 1958, Kryptopyga Hull, 1944, Masarygus Brèthes. 1908, Mermerizon, Metadon, Microdon, Paramixogaster Brunetti, 1923, Piruwa, Pseudomicrodon Hull, 1937, Rhopalosyrphus Giglio-Tos, 1891, and Thompsodon. New lectotypes are designated for Ceratrichomyia behara Séguy, 1951 and Microdon iheringi Bezzi, 1910. A total number of 267 new combinations of species and genera are proposed. New synonyms are proposed for 19 species group names. Three replacement names are introduced for primary

  15. Karyotype of some Thai Hypoxidaceae species

    Directory of Open Access Journals (Sweden)

    Ladda Eksomtramage

    2013-08-01

    Full Text Available Somatic chromosome numbers and karyotypes of nine species in three genera of Thai Hypoxidaceae were determinedin root tips. All species are diploid with 2n = 18 and asymmetrical karyotypes including metacentric (m submetacentric (smsubtelocentric (st and also telocentric (t in some species. Satellite chromosomes (SAT were observed in all species studiedexcept in C. latifolia. The karyotypes of Curculigo ensifolia 4m+8sm+6st(2SAT, C. latifolia 2m+14sm+2st, C. megacarpa2m+12sm+4st(2SAT, C. villosa 4m+10sm(2SAT+4st, Hypoxis aurea 2m+8sm+8st(2SAT, Molineria capitulata 2m+10sm+2st (2SAT+4t, M. trichocarpa 2m+10sm+6st(2SAT, M. gracilis and M. latifolia 4m+8sm+4st (2SAT+2t are reported forthe first time. The chromosome relative length of Curculigo, Hypoxis and Molineria range between 3.44-9.55, 4.03-8.12 and3.64-8.97, respectively.

  16. Immunological detection of Fusarium species in cornmeal.

    Science.gov (United States)

    Iyer, M S; Cousin, M A

    2003-03-01

    An indirect enzyme-linked immunosorbent assay (ELISA) was developed to detect Fusarium species in foods. Antibodies to proteins extracted from the mycelia of Fusarium graminearum and Fusarium moniliforme (verticillioides) were produced in New Zealand white rabbits. These antibodies detected 13 Fusarium species in addition to the producer strains. Levels of Fusarium semitectum and Fusarium tricinctum strains were below the detection threshold. The specificity of the assay was tested against 70 molds and yeasts belonging to 23 genera. One strain of Monascus species and one strain of Phoma exigua were detected; however, these two molds are not common contaminants of cereal grains or foods and should not interfere with the assay. The indirect ELISA's detection limits for F. graminearum and F. moniliforme were 0.1 and 1 microg of mold mycelium per ml of a cornmeal mixture, respectively. When spores of each mold were added individually to cornmeal mixtures (at ca. 10 spores per g) and incubated at 25 degrees C, these spores were detected by the indirect ELISA when they reached levels of 10(2) to 10(3) CFU/ml after 24 to 36 h. The indirect ELISA developed here shows promise for the detection of Fusarium species in grains or foods.

  17. Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus

    Science.gov (United States)

    Roy E. Halling; Mitchell Nuhn; Todd Osmundson; Nigel Fechner; James M. Trappe; Kasem Soytong; David Arora; David S. Hibbett; Manfred. Binder

    2012-01-01

    Harrya is described as a new genus of Boletaceae to accommodate Boletus chromapes, a pink-capped bolete with a finely scabrous stipe adorned with pink scabers, a chrome yellow base and a reddish-brown spore deposit. Harrya is a unique generic lineage with two species, one of which is newly described (

  18. Bacteria of the genera Ehrlichia and Rickettsia in ticks of the family Ixodidae with medical importance in Argentina.

    Science.gov (United States)

    Sebastian, Patrick S; Tarragona, Evelina L; Bottero, María N Saracho; Mangold, Atilio J; Mackenstedt, Ute; Nava, Santiago

    2017-01-01

    The aim of this study was to get an overview about the occurrence of bacteria from the genus Ehrlichia and Rickettsia in ixodid ticks with medical importance in Argentina. Therefore, in 2013 and 2014, free-living ticks were collected in different provinces of northern Argentina. These ticks were determined as Amblyomma sculptum, Amblyomma neumanni, Amblyomma parvum, Amblyomma triste, Amblyomma ovale, Amblyomma tonelliae and Haemaphysalis juxtakochi. All samples were tested to determine the infection with Ehrlichia spp. and Rickettsia spp. by PCR assays. Rickettsial DNA was detected in all tested tick species, with the exception of A. tonelliae. 'Candidatus Rickettsia amblyommii', 'Candidatus Rickettsia andeanae', and Rickettsia parkeri were found in A. neumanni, A. parvum, and A. triste, respectively. Another rickettsial species, Rickettsia bellii, was found in A. sculptum, A. ovale and H. juxtakochi. None of the tested ticks showed infection with Ehrlichia. The results of the study demonstrate that Rickettsia species belonging to the spotted fever group are associated with various species of Amblyomma throughout a wide area of northern Argentina, where cases of Amblyomma ticks biting humans are common.

  19. Scopulariopsis and scopulariopsis-like species from indoor environments

    Directory of Open Access Journals (Sweden)

    J.H.C. Woudenberg

    2017-09-01

    Full Text Available Scopulariopsis-like species are often reported from the indoor environment, as well as from clinical samples. The lack of type isolates and thorough phylogenetic studies in the Microascaceae hampered the correct identification of these isolates. Based on recent phylogenetic studies, which resulted in multiple name changes, the aim is to molecularly identify the Scopulariopsis and scopulariopsis-like species which occur in the indoor environment and give an overview of the current species in these genera and their habitats. Strains from the CBS culture collection were supplemented with almost 80 indoor strains of which the internal transcribed spacer 1 and 2 and intervening 5.8S nrDNA (ITS, beta-tubulin (tub2 and translation elongation factor 1-alpha (tef1 gene regions were sequenced for phylogenetic inference. The multi-gene phylogenies recognise 33 Microascus species and 12 Scopulariopsis species and showed that the recently established genus Fuscoannellis, typified by Scopulariopsis carbonaria, should be synonymized with the genus Yunnania. Seven new Microascus species, four new Scopulariopsis species, and one new Yunnania species, are described, and a new name in Microascus and two new name combinations (one in Microascus, and one in Yunnania are proposed. In the indoor environment 14 Microascus species and three Scopulariopsis species were found. Scopulariopsis brevicaulis (22 indoor isolates and Microascus melanosporus (19 indoor isolates are the most common indoor species, in number of isolates, followed by M. paisii (8 indoor isolates and S. candida (7 indoor isolates. A genus phylogeny based on the ITS, tef1 and the large subunit 28S nrDNA (LSU of the type or representative isolates of all here recognised species is provided depicting all species habitats. No correlation between phylogenetic relationship and habitat preference could be observed. Ten species which are found indoor are also found in relation with human-derived samples. A

  20. Differences in the response sensitivity of stomatal index to atmospheric CO2 among four genera of Cupressaceae conifers.

    Science.gov (United States)

    Haworth, Matthew; Heath, James; McElwain, Jennifer C

    2010-03-01

    The inverse relationship between stomatal density (SD: number of stomata per mm(2) leaf area) and atmospheric concentration of CO2 ([CO2]) permits the use of plants as proxies of palaeo-atmospheric CO2. Many stomatal reconstructions of palaeo-[CO2] are based upon multiple fossil species. However, it is unclear how plants respond to [CO2] across genus, family or ecotype in terms of SD or stomatal index (SI: ratio of stomata to epidermal cells). This study analysed the stomatal numbers of conifers from the ancient family Cupressaceae, in order to examine the nature of the SI-[CO2] relationship, and potential implications for stomatal reconstructions of palaeo-[CO2]. Methods Stomatal frequency measurements were taken from historical herbarium specimens of Athrotaxis cupressoides, Tetraclinis articulata and four Callitris species, and live A. cupressoides grown under CO2-enrichment (370, 470, 570 and 670 p.p.m. CO2). T. articulata, C. columnaris and C. rhomboidea displayed significant reductions in SI with rising [CO2]; by contrast, A. cupressoides, C. preissii and C. oblonga show no response in SI. However, A. cupressoides does reduce SI to increases in [CO2] above current ambient (approx. 380 p.p.m. CO2). This dataset suggests that a shared consistent SI-[CO2] relationship is not apparent across the genus Callitris. Conclusions The present findings suggest that it is not possible to generalize how conifer species respond to fluctuations in [CO2] based upon taxonomic relatedness or habitat. This apparent lack of a consistent response, in conjunction with high variability in SI, indicates that reconstructions of absolute palaeo-[CO2] based at the genus level, or upon multiple species for discrete intervals of time are not as reliable as those based on a single or multiple temporally overlapping species.