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Sample records for strongly bound diatomic

  1. Bound-free Spectra for Diatomic Molecules

    Science.gov (United States)

    Schwenke, David W.

    2012-01-01

    It is now recognized that prediction of radiative heating of entering space craft requires explicit treatment of the radiation field from the infrared (IR) to the vacuum ultra violet (VUV). While at low temperatures and longer wavelengths, molecular radiation is well described by bound-bound transitions, in the short wavelength, high temperature regime, bound-free transitions can play an important role. In this work we describe first principles calculations we have carried out for bound-bound and bound-free transitions in N2, O2, C2, CO, CN, NO, and N2+. Compared to bound ]bound transitions, bound-free transitions have several particularities that make them different to deal with. These include more complicated line shapes and a dependence of emission intensity on both bound state diatomic and atomic concentrations. These will be discussed in detail below. The general procedure we used was the same for all species. The first step is to generate potential energy curves, transition moments, and coupling matrix elements by carrying out ab initio electronic structure calculations. These calculations are expensive, and thus approximations need to be made in order to make the calculations tractable. The only practical method we have to carry out these calculations is the internally contracted multi-reference configuration interaction (icMRCI) method as implemented in the program suite Molpro. This is a widely used method for these kinds of calculations, and is capable of generating very accurate results. With this method, we must first of choose which electrons to correlate, the one-electron basis to use, and then how to generate the molecular orbitals.

  2. Relation between properties of long-range diatomic bound states

    DEFF Research Database (Denmark)

    Spirko, Vladimir; Sauer, Stephan P. A.; Szalewicz, Krzysztof

    2013-01-01

    Long-range states of diatomic molecules have average values of internuclear separations at least one order of magnitude larger than the equilibrium value of R. For example, the helium dimer 4He2 has a single bound state with of about 50 Å. We show that the properties of these states, such as ...

  3. Calculations of some weakly bound diatomic molecular negative ions

    International Nuclear Information System (INIS)

    Li, Y.; Lin, C.D.

    1999-01-01

    We examine the existence of stable bound states of some diatomic molecular ions where the neutral molecule itself is either unbound or barely bound. Two bound states have been found for the HeH - ion even though HeH is known to be unbound. We have found no bound states for He 2 - even though 4 He 2 is known to have one bound state. The predicted binding energies for HeH - are of the order of 1 K and depend sensitively on the isotope combinations. Other weakly bound negative ions such as NeH - and ArH - have also been investigated. These weakly bound molecular ions are good candidates for cold collision experiments. copyright 1999 The American Physical Society

  4. Diatom Frustule-Bound δ13c Measurements and Reconstruction of Εp

    Science.gov (United States)

    Stoll, H. M.; Mejia Ramirez, L. M.; Mendez-Vicente, A.; Abrevaya, L.; Bolton, C. T.; Anderson, R. F.

    2014-12-01

    Diatom frustules contain embedded organic matter such as amino acids, which may offer a potential phase for measuring the carbon isotopic fractionation during marine photosynthesis (ɛp). We describe optimal sample preparation methods for cleaning external organic matter and separating frustules into various size classes while reducing significance of opal from radiolaria and silicoflagellates. Analysis of discrete separated fractions of diatom opal from each sediment sample is facilitated by our new method for analysis of very small sample sizes using NanoEA with cryotrapping of evolved CO2. We evaluate the fidelity with which frustule-bound organic matter captures the variation in ɛp by comparing δ13C of frustule-bound organic matter with that of total cellular carbon in diatoms grown in culture, and by comparing the δ13C of frustule-bound organic matter in core tops with that of δ13C of diatom-produced biomarkers in the overlying water column. In core-top transects, frustule-bound δ13C is consistent with strong growth rate control over fractionation during photosynthesis (ɛp). Finally, we evaluate the temporal trends in carbon isotopic fractionation during photosynthesis since the Late Miocene in samples from the Eastern Equatorial Pacific.

  5. Vibrational Excitation of Diatomic Molecular Ions in Strong Field Ionization of Diatomic Molecules

    International Nuclear Information System (INIS)

    Kjeldsen, Thomas K.; Madsen, Lars Bojer

    2005-01-01

    A model based on the strong-field and Born-Oppenheimer approximations qualitatively describes the distribution over vibrational states formed in a diatomic molecular ion following ionization of the neutral molecule by intense laser pulses. Good agreement is found with a recent experiment [X. Urbain et al., Phys. Rev. Lett. 92, 163004 (2004)]. In particular, the observed deviation from a Franck-Condon-like distribution is reproduced. Additionally, we demonstrate control of the vibrational distribution by a variation of the peak intensity or a change of frequency of the laser pulse

  6. Bound states in a strong magnetic field

    International Nuclear Information System (INIS)

    Machado, C. S.; Navarra, F. S.; Noronha, J.; Oliveira, E. G.; Ferreira Filho, L. G.

    2013-01-01

    We expect a strong magnetic field to be produced in the perpendicular direction to the reaction plane, in a noncentral heavy-ion collision . The strength of the magnetic field is estimated to be eB∼m 2 π ∼ 0.02 GeV 2 at the RHIC and eB∼ 15m 2 π ∼ 0.3 GeV 2 at the LHC. We investigate the effects of the magnetic field on B 0 and D 0 mesons, focusing on the changes of the energy levels and of the mass of the bound states.

  7. An Investigation Into the Molecular and Isotopic Composition of Diatom Frustule-Bound Organic Matter: Method Development for New Proxies

    Science.gov (United States)

    Bridoux, M. C.; Ingalls, A. E.

    2009-12-01

    Diatoms are single cell phytoplankton that are ubiquitous in marine ecosystems and are responsible for up to 40% of the carbon fixed annually in the ocean. Their intricately nanopatterned siliceous frustules are formed under the control of template organic molecules, some of which are incorporated into the frustule during growth. Several diatom frustule-based paleoproxies have been developed to exploit these microfossils because they are from a known phytoplankton source that is relatively unaltered from diagenesis. Among these proxies, diatom frustule-bound organic matter (OM) is recognized as a potentially important material for use in paleoreconstructions of past productivity (13C/12C), nutrient utilization (15N/14N) as well as to determine the radiocarbon age of sedimentary frustules (Δ14C). Despite numerous advances, diatom frustule-bound OM remains poorly characterized. Here we focus on the chemical characterization of diatom frustule-bound OM with the goal of developing molecular and compound-specific isotope methods to better reconstruct the past environments of diatom rich regions such as the Southern Ocean and the North Pacific. To do this, we 1) chemically cleaned diatom frustules, 2) dissolve them in HF to release organic compounds embedded in the frustules and 3) unambiguously characterized this organic matter by ion pairing reversed phase liquid chromatography coupled to diode array, electrospray ionization - ion trap mass spectrometry (ESI/IT-MSn) and accurate mass quadrupole time of flight mass spectrometry (Q-TOF). These analyses reveal the presence of low molecular weight, UV light absorbing compounds called mycosporine-like amino acids (MAAs) and a series of long chain polyamines (LCPAs) consisting of N-methylated derivatives of polypropyleneimine units attached to putrescine. LCPAs are known to direct silicification, while MAAs are thought to provide sunscreen to many marine organisms. The presence of these specific biomarkers in sediment

  8. Bound states in strongly correlated magnetic and electronic systems

    International Nuclear Information System (INIS)

    Trebst, S.

    2002-02-01

    A novel strong coupling expansion method to calculate two-particle spectra of quantum lattice models is developed. The technique can be used to study bosonic and fermionic models and in principle it can be applied to systems in any dimension. A number of strongly correlated magnetic and electronic systems are examined including the two-leg spin-half Heisenberg ladder, the dimerized Heisenberg chain with a frustrating next-nearest neighbor interaction, coupled Heisenberg ladders, and the one-dimensional Kondo lattice model. In the various models distinct bound states are found below the two-particle continuum. Quantitative calculations of the dispersion, coherence length and binding energy of these bound states are used to describe spectroscopic experiments on (Ca,La) 14 Cu 24 O 41 and NaV 2 O 5 . (orig.)

  9. Influence of strong perturbations on wall-bounded flows

    Science.gov (United States)

    Buxton, O. R. H.; Ewenz Rocher, M.; Rodríguez-López, E.

    2018-01-01

    Single-point hot-wire measurements are made downstream of a series of spanwise repeating obstacles that are used to generate an artificially thick turbulent boundary layer. The measurements are made in the near field, in which the turbulent boundary layer is beginning to develop from the wall-bounded wakes of the obstacles. The recent paper of Rodríguez-López et al. [E. Rodríguez-López et al., Phys. Rev. Fluids 1, 074401 (2016), 10.1103/PhysRevFluids.1.074401] broadly categorized the mechanisms by which canonical turbulent boundary layers eventually develop from wall-bounded wakes into two distinct mechanisms, the wall-driven and wake-driven mechanisms. In the present work we attempt to identify the geometric parameters of tripping arrays that trigger these two mechanisms by examining the spectra of the streamwise velocity fluctuations and the intermittent outer region of the flow. Using a definition reliant upon the magnitude of the velocity fluctuations, an intermittency function is devised that can discriminate between turbulent and nonturbulent flow. These results are presented along with the spectra in order to try to ascertain which aspects of a trip's geometry are more likely to favor the wall-driven or wake-driven mechanism. The geometrical aspects of the trips tested are the aspect ratio, the total blockage, and the blockage at the wall. The results indicate that the presence, or not, of perforations is the most significant factor in affecting the flow downstream. The bleed of fluid through the perforations reenergizes the mean recirculation and leads to a narrower intermittent region with a more regular turbulent-nonturbulent interface. The near-wall turbulent motions are found to recover quickly downstream of all of the trips with a wall blockage of 50%, but a clear influence of the outer fluctuations, generated by the tip vortices of the trips, is observed in the near-wall region for the high total blockage trips. The trip with 100% wall blockage is

  10. Application of a nanoEA-IRMS system for δ13C measurement of biomineral-bound organics in samples of diatom opal with nanomolar quantities of C

    Science.gov (United States)

    Méndez-Vicente, Ana; María Mejía-Ramírez, Luz; Stoll, Heather

    2013-04-01

    We describe the isotopic measurement of δ13C in very small samples of diatom opal (nanomolar quantities of C) both from fossil sediments and cultures. We use a nano-EA system composed of a combustion elemental analyzer (EA3000 series, Eurovector), with standard 18 mm diameter quartz oxidation-reduction reactors and an ash removal device that aids in removal of uncombusted opal and ensures a long reactor lifetime. This is coupled to a custom designed trapping and cromatography system (Nano-CF, Nu Instruments Ltd.) which cryogenically removes CO2 generated by sample combustion and introduces the gas into a low-flow helium carrier stream to the mass spectrometer (Nu Perspective IRMS instrument, Nu Instruments Ltd.). This technique allows for an important reduction in the minimum sample requirements for analysis compared to a typical EA, however the need to reduce the contribution of the blank to the measured values becomes all the more critical. Blank from the capsules can be minimized through specific protocols including cleaning with solvents and reducing the size of the capsule by cutting it to a smaller size, attaining blanks as low as 13.75±2.15 nmol C. Under these conditions we can accurately measure both standards and diatom reference materials in the range of 100 to 330 nmol C, with a precision of 2σ 10 ‰ analysed in sequence. Applied to measure biomineral-bound organics in cleaned diatom samples from sediments, the low sample size requirements of this technique allows us to analyse multiple size fractions within one sample, and explore isotopic fractionation patterns between them. We have analysed samples from sediments of both centric and pennate diatoms typically in the range of 200 to 1300 µg of cleaned opal. Analysis of culture samples of Thalassiosira pseudonana of 20 to 150 µg of cleaned opal, allows us to evaluate if there is covariation of the whole cell particulate organic carbon (POC) and diatom-bound δ13C values. Initial results suggest

  11. Investigations of the potential functions of weakly bound diatomic molecules and laser-assisted excitive Penning ionization

    International Nuclear Information System (INIS)

    Goble, J.H. Jr.

    1982-05-01

    Three variations on the Dunham series expansion function of the potential of a diatomic molecule are compared. The differences among these expansions lie in the choice of the expansion variable, lambda. The functional form of these variables are lambda/sub s/ = l-r/sub e//r for the Simon-Parr-Finlan version, lambda/sub T/ - 1-(r/sub e//r)/sup p/ for that of Thakkar, and lambda/sub H/ = 1-exp(-rho(r/r/sub e/-1) for that of Huffaker. A wide selection of molecular systems are examined. It is found that, for potentials in excess of thirty kcal/mole, the Huffaker expansion provides the best description of the three, extrapolating at large internuclear separation to a value within 10% of the true dissociation energy. For potentials that result from the interaction of excited states, all series expansions show poor behavior away from the equilibrium internuclear separation of the molecule. The series representation of the potentials of weakly bound molecules are examined in more detail. The ground states of BeAr + , HeNe + , NaAr, and Ar 2 and the excited states of HeNe+, NaNe, and NaAr are best described by the Thakkar expansion. Finally, the observation of laser-assisted excitive Penning ionization in a flowing afterglow is reported. The reaction Ar( 3 P 2 ) + Ca + h nu → Ar + Ca + (5p 2 P/sub J/) + e - occurs when the photon energy, h nu, is approximately equal to the energy difference between the metastable argon and one of the fine structure levels of the ion's doublet. By monitoring the cascade fluorescence of the above reaction and comparing it to the flourescence from the field-free process Ar( 3 P 2 ) + Ca → Ar + Ca + (4p 2 P/sub J/) + e - a surprisingly large cross section of 6.7 x 10 3 A 2 is estimated

  12. The Bekenstein bound in strongly coupled O(N) scalar field theory

    International Nuclear Information System (INIS)

    Magalhaes, T. Santos; Svaiter, N.F.; Menezes, G.

    2009-09-01

    We discuss the O(N) self-interacting scalar field theory, in the strong-coupling regime and also in the limit of large N. Considering that the system is in thermal equilibrium with a reservoir at temperature β -1 , we assume the presence of macroscopic boundaries conning the field in a hypercube of side L. Using the strong-coupling perturbative expansion, we generalize previous results, i.e., we obtain the renormalized mean energy E and entropy S for the system in rst order of the strong-coupling perturbative expansion, presenting an analytical proof that the specific entropy also satisfies in some situations a quantum bound. When considering the low temperature behavior of the specific entropy, the sign of the renormalized zero-point energy can invalidate this quantum bound. If the renormalized zero point-energy is a positive quantity, at intermediate temperatures and in the low temperature limit, there is a quantum bound. (author)

  13. Investigations of the potential functions of weakly bound diatomic molecules and laser-assisted excitive Penning ionization

    Energy Technology Data Exchange (ETDEWEB)

    Goble, J.H. Jr.

    1982-05-01

    Three variations on the Dunham series expansion function of the potential of a diatomic molecule are compared. The differences among these expansions lie in the choice of the expansion variable, lambda. The functional form of these variables are lambda/sub s/ = l-r/sub e//r for the Simon-Parr-Finlan version, lambda/sub T/ - 1-(r/sub e//r)/sup p/ for that of Thakkar, and lambda/sub H/ = 1-exp(-rho(r/r/sub e/-1) for that of Huffaker. A wide selection of molecular systems are examined. It is found that, for potentials in excess of thirty kcal/mole, the Huffaker expansion provides the best description of the three, extrapolating at large internuclear separation to a value within 10% of the true dissociation energy. For potentials that result from the interaction of excited states, all series expansions show poor behavior away from the equilibrium internuclear separation of the molecule. The series representation of the potentials of weakly bound molecules are examined in more detail. The ground states of BeAr/sup +/, HeNe/sup +/, NaAr, and Ar/sub 2/ and the excited states of HeNe+, NaNe, and NaAr are best described by the Thakkar expansion. Finally, the observation of laser-assisted excitive Penning ionization in a flowing afterglow is reported. The reaction Ar(/sup 3/P/sub 2/) + Ca + h nu ..-->.. Ar + Ca/sup +/(5p /sup 2/P/sub J/) + e/sup -/ occurs when the photon energy, h nu, is approximately equal to the energy difference between the metastable argon and one of the fine structure levels of the ion's doublet. By monitoring the cascade fluorescence of the above reaction and comparing it to the flourescence from the field-free process Ar(/sup 3/P/sub 2/) + Ca ..-->.. Ar + Ca/sup +/(4p /sup 2/P/sub J/) + e/sup -/ a surprisingly large cross section of 6.7 x 10/sup 3/ A/sup 2/ is estimated.

  14. The QCD mass gap and quark deconfinement scales as mass bounds in strong gravity

    Energy Technology Data Exchange (ETDEWEB)

    Burikham, Piyabut [Chulalongkorn University, High Energy Physics Theory Group, Department of Physics, Faculty of Science, Bangkok (Thailand); Harko, Tiberiu [Babes-Bolyai University, Department of Physics, Cluj-Napoca (Romania); University College London, Department of Mathematics, London (United Kingdom); Lake, Matthew J. [Sun Yat-Sen University, School of Physics, Guangzhou (China); Nanyang Technological University, School of Physical and Mathematical Sciences, Singapore (Singapore); Naresuan University, The Institute for Fundamental Study, ' ' The Tah Poe Academia Institute' ' , Phitsanulok (Thailand); Thailand Center of Excellence in Physics, Ministry of Education, Bangkok (Thailand)

    2017-11-15

    Though not a part of mainstream physics, Salam's theory of strong gravity remains a viable effective model for the description of strong interactions in the gauge singlet sector of QCD, capable of producing particle confinement and asymptotic freedom, but not of reproducing interactions involving SU(3) color charge. It may therefore be used to explore the stability and confinement of gauge singlet hadrons, though not to describe scattering processes that require color interactions. It is a two-tensor theory of both strong interactions and gravity, in which the strong tensor field is governed by equations formally identical to the Einstein equations, apart from the coupling parameter, which is of order 1 GeV{sup -1}. We revisit the strong gravity theory and investigate the strong gravity field equations in the presence of a mixing term which induces an effective strong cosmological constant, Λ{sub f}. This introduces a strong de Sitter radius for strongly interacting fermions, producing a confining bubble, which allows us to identify Λ{sub f} with the 'bag constant' of the MIT bag model, B ≅ 2 x 10{sup 14} g cm{sup -3}. Assuming a static, spherically symmetric geometry, we derive the strong gravity TOV equation, which describes the equilibrium properties of compact hadronic objects. From this, we determine the generalized Buchdahl inequalities for a strong gravity 'particle', giving rise to upper and lower bounds on the mass/radius ratio of stable, compact, strongly interacting objects. We show, explicitly, that the existence of the lower mass bound is induced by the presence of Λ{sub f}, producing a mass gap, and that the upper bound corresponds to a deconfinement phase transition. The physical implications of our results for holographic duality in the context of the AdS/QCD and dS/QCD correspondences are also discussed. (orig.)

  15. The QCD mass gap and quark deconfinement scales as mass bounds in strong gravity

    International Nuclear Information System (INIS)

    Burikham, Piyabut; Harko, Tiberiu; Lake, Matthew J.

    2017-01-01

    Though not a part of mainstream physics, Salam's theory of strong gravity remains a viable effective model for the description of strong interactions in the gauge singlet sector of QCD, capable of producing particle confinement and asymptotic freedom, but not of reproducing interactions involving SU(3) color charge. It may therefore be used to explore the stability and confinement of gauge singlet hadrons, though not to describe scattering processes that require color interactions. It is a two-tensor theory of both strong interactions and gravity, in which the strong tensor field is governed by equations formally identical to the Einstein equations, apart from the coupling parameter, which is of order 1 GeV -1 . We revisit the strong gravity theory and investigate the strong gravity field equations in the presence of a mixing term which induces an effective strong cosmological constant, Λ f . This introduces a strong de Sitter radius for strongly interacting fermions, producing a confining bubble, which allows us to identify Λ f with the 'bag constant' of the MIT bag model, B ≅ 2 x 10 14 g cm -3 . Assuming a static, spherically symmetric geometry, we derive the strong gravity TOV equation, which describes the equilibrium properties of compact hadronic objects. From this, we determine the generalized Buchdahl inequalities for a strong gravity 'particle', giving rise to upper and lower bounds on the mass/radius ratio of stable, compact, strongly interacting objects. We show, explicitly, that the existence of the lower mass bound is induced by the presence of Λ f , producing a mass gap, and that the upper bound corresponds to a deconfinement phase transition. The physical implications of our results for holographic duality in the context of the AdS/QCD and dS/QCD correspondences are also discussed. (orig.)

  16. Strong Convergence Bound of the Pareto Index Estimator under Right Censoring

    Directory of Open Access Journals (Sweden)

    Peng Zuoxiang

    2010-01-01

    Full Text Available Let be a sequence of positive independent and identically distributed random variables with common Pareto-type distribution function as , where represents a slowly varying function at infinity. In this note we study the strong convergence bound of a kind of right censored Pareto index estimator under second-order regularly varying conditions.

  17. Strong Convergence Bound of the Pareto Index Estimator under Right Censoring

    Directory of Open Access Journals (Sweden)

    Bao Tao

    2010-01-01

    Full Text Available Let {Xn,n≥1} be a sequence of positive independent and identically distributed random variables with common Pareto-type distribution function F(x=1−x−1/γlF(x as γ>0, where lF(x represents a slowly varying function at infinity. In this note we study the strong convergence bound of a kind of right censored Pareto index estimator under second-order regularly varying conditions.

  18. Bound-state β decay of a neutron in a strong magnetic field

    International Nuclear Information System (INIS)

    Kouzakov, Konstantin A.; Studenikin, Alexander I.

    2005-01-01

    The β decay of a neutron into a bound (pe - ) state and an antineutrino in the presence of a strong uniform magnetic field (B > or approx. 10 13 G) is considered. The β decay process is treated within the framework of the standard model of weak interactions. A Bethe-Salpeter formalism is employed for description of the bound (pe - ) system in a strong magnetic field. For the field strengths 10 13 18 G the estimate for the ratio of the bound-state decay rate w b and the usual (continuum-state) decay rate w c is derived. It is found that in such strong magnetic fields w b /w c ∼0.1-0.4. This is in contrast to the field-free case, where w b /w c ≅4.2x10 -6 [J. N. Bahcall, Phys. Rev. 124, 495 (1961); L. L. Nemenov, Sov. J. Nucl. Phys. 15, 582 (1972); X. Song, J. Phys. G: Nucl. Phys. 13, 1023 (1987)]. The dependence of the ratio w b /w c on the magnetic field strength B exhibits a logarithmiclike behavior. The obtained results can be important for applications in astrophysics and cosmology

  19. A k-Bounded Symbolic Execution for Checking Strong Heap Properties of Open Systems

    DEFF Research Database (Denmark)

    Lee, Jooyong; Deng, Xianghua; Bogor, Robby

    2006-01-01

    This paper presents Kiasan, a bounded technique to reason about open systems based on a path sensitive, relatively sound and complete symbolic execution instead of the usual compositional reasoning through weakest precondition calculation that summarizes all execution paths. Kiasan is able to check...... strong heap properties, and it is fully automatic and flexible in terms of its cost and the guarantees it provides. It allows a user-adjustable mixed compositional/non-compositional reasoning and naturally produces error traces as fault evidence. We implemented Kiasan using the Bogor model checking...

  20. High precision hyperfine measurements in Bismuth challenge bound-state strong-field QED.

    Science.gov (United States)

    Ullmann, Johannes; Andelkovic, Zoran; Brandau, Carsten; Dax, Andreas; Geithner, Wolfgang; Geppert, Christopher; Gorges, Christian; Hammen, Michael; Hannen, Volker; Kaufmann, Simon; König, Kristian; Litvinov, Yuri A; Lochmann, Matthias; Maaß, Bernhard; Meisner, Johann; Murböck, Tobias; Sánchez, Rodolfo; Schmidt, Matthias; Schmidt, Stefan; Steck, Markus; Stöhlker, Thomas; Thompson, Richard C; Trageser, Christian; Vollbrecht, Jonas; Weinheimer, Christian; Nörtershäuser, Wilfried

    2017-05-16

    Electrons bound in highly charged heavy ions such as hydrogen-like bismuth 209 Bi 82+ experience electromagnetic fields that are a million times stronger than in light atoms. Measuring the wavelength of light emitted and absorbed by these ions is therefore a sensitive testing ground for quantum electrodynamical (QED) effects and especially the electron-nucleus interaction under such extreme conditions. However, insufficient knowledge of the nuclear structure has prevented a rigorous test of strong-field QED. Here we present a measurement of the so-called specific difference between the hyperfine splittings in hydrogen-like and lithium-like bismuth 209 Bi 82+,80+ with a precision that is improved by more than an order of magnitude. Even though this quantity is believed to be largely insensitive to nuclear structure and therefore the most decisive test of QED in the strong magnetic field regime, we find a 7-σ discrepancy compared with the theoretical prediction.

  1. Violation of the Holographic Viscosity Bound in a Strongly Coupled Anisotropic Plasma

    Science.gov (United States)

    Rebhan, Anton; Steineder, Dominik

    2012-01-01

    We study the conductivity and shear viscosity tensors of a strongly coupled N=4 super-Yang-Mills plasma which is kept anisotropic by a θ parameter that depends linearly on one of the spatial dimensions. Its holographic dual is given by an anisotropic axion-dilaton-gravity background and has recently been proposed by Mateos and Trancanelli as a model for the preequilibrium stage of quark-gluon plasma in heavy-ion collisions. By applying the membrane paradigm which we also check by numerical evaluation of Kubo formula and lowest lying quasinormal modes, we find that the shear viscosity purely transverse to the direction of anisotropy saturates the holographic viscosity bound, whereas longitudinal shear viscosities are smaller, providing the first such example not involving higher-derivative theories of gravity and, more importantly, with fully known gauge-gravity correspondence.

  2. Strongly bound excitons in monolayer PtS2 and PtSe2

    KAUST Repository

    Sajjad, M.

    2018-01-22

    Based on first-principles calculations, the structural, electronic, and optical properties of monolayers PtS2 and PtSe2 are investigated. The bond stiffnesses and elastic moduli are determined by means of the spring constants and strain-energy relations, respectively. Dynamic stability is confirmed by calculating the phonon spectra, which shows excellent agreement with experimental reports for the frequencies of the Raman-active modes. The Heyd-Scuseria-Ernzerhof functional results in electronic bandgaps of 2.66 eV for monolayer PtS2 and 1.74 eV for monolayer PtSe2. G0W0 calculations combined with the Bethe-Salpeter equation are used to predict the optical spectra and exciton binding energies (0.78 eV for monolayer PtS2 and 0.60 eV for monolayer PtSe2). It turns out that the excitons are strongly bound and therefore very stable against external perturbations.

  3. Strong solutions for the Navier-Stokes equations on bounded and unbounded domains with a moving boundary

    Directory of Open Access Journals (Sweden)

    Juergen Saal

    2007-02-01

    Full Text Available It is proved under mild regularity assumptions on the data that the Navier-Stokes equations in bounded and unbounded noncylindrical regions admit a unique local-in-time strong solution. The result is based on maximal regularity estimates for the in spatial regions with a moving boundary obtained in [16] and the contraction mapping principle.

  4. Strong Coupling and Bounds on the Spin-2 Mass in Massive Gravity

    Science.gov (United States)

    Burrage, Clare; Kaloper, Nemanja; Padilla, Antonio

    2013-07-01

    The de Rham-Gabadadze-Tolley theory of a single massive spin-2 field has a cutoff much below its Planck scale because the extra modes from the massive spin-2 multiplet involve higher derivative self-interactions, controlled by a scale convoluted from its mass. Generically, these correct the propagator by environmental effects. The resulting effective cutoff depends on the environmental parameters and the spin-2 “graviton” mass. Requiring the theory to be perturbative down to O(1)mm, we derive bounds on the mass, corresponding to ≳O(1)meV for the generic case, assuming the coupling to be given by the standard Newton’s constant, and somewhat weaker bounds in cases with fine-tuning. Thus, the theory of a single massive spin-2 can really only be viewed as a theory describing the full nonlinear propagation of a massive spin-2 field on a fixed background and not as an approximation to general relativity.

  5. The Diatoms

    Indian Academy of Sciences (India)

    IAS Admin

    merged plants in a lake. Taxonomists classify diatoms into two major groups on the basis of symmetry: 1) Centrics – circular; radial symmetry (Figure 3a), and 2) Pennates – elongate; bilateral symmetry (Figure 3b). Diatom taxonomy is based on morphological characters like size, shape, and patterns of frustules [1]. Diversity ...

  6. Strongly regular family of boundary-fitted tetrahedral meshes of bounded C^2 domains

    Czech Academy of Sciences Publication Activity Database

    Hošek, Radim

    2016-01-01

    Roč. 61, č. 3 (2016), s. 233-251 ISSN 0862-7940 EU Projects: European Commission(XE) 320078 - MATHEF Institutional support: RVO:67985840 Keywords : boundary fitted mesh * strongly regular family * Sommerville tetrahedron Subject RIV: BA - General Mathematics Impact factor: 0.618, year: 2016 http://hdl.handle.net/10338.dmlcz/145699

  7. The Diatoms

    Indian Academy of Sciences (India)

    IAS Admin

    oxygen we inhale. Diatoms alone account for around 40% of the phytoplankton on Earth which implies 20–25% global net pri- mary production. This is more .... reproduction. 3 Chlorophyll 'a' is an essential pigment for photosynthesis found in plants, algae, and cyanobacteria. It absorbs en- ergy from wavelengths of violet-.

  8. The Diatoms

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 20; Issue 10. The Diatoms: Big Significance of Tiny Glass Houses. Aditi Kale Balasubramanian Karthick. General Article Volume 20 Issue 10 October 2015 pp 919-930. Fulltext. Click here to view fulltext PDF. Permanent link:

  9. Application of bounding spectra to seismic design of piping based on the performance of above ground piping in power plants subjected to strong motion earthquakes

    Energy Technology Data Exchange (ETDEWEB)

    Stevenson, J.D. [Stevenson and Associates, Cleveland, OH (United States)

    1995-02-01

    This report extends the potential application of Bounding Spectra evaluation procedures, developed as part of the A-46 Unresolved Safety Issue applicable to seismic verification of in-situ electrical and mechanical equipment, to in-situ safety related piping in nuclear power plants. The report presents a summary of earthquake experience data which define the behavior of typical U.S. power plant piping subject to strong motion earthquakes. The report defines those piping system caveats which would assure the seismic adequacy of the piping systems which meet those caveats and whose seismic demand are within the bounding spectra input. Based on the observed behavior of piping in strong motion earthquakes, the report describes the capabilities of the piping system to carry seismic loads as a function of the type of connection (i.e. threaded versus welded). This report also discusses in some detail the basic causes and mechanisms for earthquake damages and failures to power plant piping systems.

  10. Application of bounding spectra to seismic design of piping based on the performance of above ground piping in power plants subjected to strong motion earthquakes

    International Nuclear Information System (INIS)

    Stevenson, J.D.

    1995-02-01

    This report extends the potential application of Bounding Spectra evaluation procedures, developed as part of the A-46 Unresolved Safety Issue applicable to seismic verification of in-situ electrical and mechanical equipment, to in-situ safety related piping in nuclear power plants. The report presents a summary of earthquake experience data which define the behavior of typical U.S. power plant piping subject to strong motion earthquakes. The report defines those piping system caveats which would assure the seismic adequacy of the piping systems which meet those caveats and whose seismic demand are within the bounding spectra input. Based on the observed behavior of piping in strong motion earthquakes, the report describes the capabilities of the piping system to carry seismic loads as a function of the type of connection (i.e. threaded versus welded). This report also discusses in some detail the basic causes and mechanisms for earthquake damages and failures to power plant piping systems

  11. Amine-functionalized diatom frustules: a platform for specific and sensitive detection of nitroaromatic explosive derivative.

    Science.gov (United States)

    Selvaraj, Viji; Thomas, Neethi; Anthuvan, Allen Joseph; Nagamony, Ponpandian; Chinnuswamy, Viswanathan

    2017-12-14

    In the present study, an attempt was made to develop a proof of concept for the detection of nitroaromatic explosive derivatives through the photoluminescence (PL) quenching process using functionalized diatom frustules as a sensing platform. The diatom frustules are composed of nanostructured, highly porous biogenic silica material and emit strong, visible blue PL upon UV excitation. PL-active biosilica was isolated from the marine diatom Nitzschia sp. and was amine-functionalized to develop a sensing platform. Functionalized diatom frustules were further characterized using field emission scanning electron microscope and a series of spectroscopic methods. When nitroaromatic compounds were bound to the functionalized diatom frustules biosilica, the PL intensity from the functionalized biosilica was partially quenched due to the electrophilic nature of the nitro (-NO) groups. The quenching process confirmed the Meisenheimer complex formation and was investigated by using Fourier transform infrared spectroscopy and time-resolved photoluminescence studies. The developed platform was further evaluated for its sensitivity and specificity, and the limit of detection (LOD) of the assay was determined as 1 μM for a series of nitroaromatic explosive compounds. In conclusion, the developed sensing platform will have great utility in the development of on-site detection platforms for sensitive detection of warfare explosive nitroaromatic compounds from the environment.

  12. Indicators: Sediment Diatoms

    Science.gov (United States)

    Diatoms are a type of algae that are typically abundant in marine and freshwater ecosystems. They have inorganic cell walls made up of silica (glass). Diatoms most commonly grow suspended in water, although they can also attach to substrates.

  13. Theory of atoms in strong, pulsed electromagnetic fields: 2, A free electron and a harmonically bound electron

    International Nuclear Information System (INIS)

    Multiple scale methods are used to treat several ingredients of the theory of atoms in strong electromagnetic fields. First, a focused electromagnetic field is expanded. Second, a classical electron is described giving the ponderomotive potential. Third, the quantum electron is treated in the WKB approximation. Fourth, the one dimensional quantum harmonic oscillator is solved; and last the one dimensional square well, showing the low intensity limit of the theory

  14. Biophotonics of diatoms

    DEFF Research Database (Denmark)

    Gössling, Johannes Wilhelm

    Diatoms are unicellular microalgae present in all aquatic environments on earth. Due to their high photosynthetic productivity and abundance, diatoms are main components of aquatic food webs and among the main contributors of global photosynthetic carbon fixation. A unique feature of diatoms...... is the encasement of the cell in a silicate frustule compounded of two valves and corresponding girdle bands. Photonic structures in the frustule, i.e. pores and chambers on the micro- to nanoscale, interact with electromagnetic radiation in the visible spectrum of light. It has therefore been proposed...... in living diatom cells. We could show that the valve of the centric diatom species Coscinodiscus granii guides light in the horizontal plane, and redistributes photosynthetically productive radiation over the entire cell. Optical coupling of chloroplasts to the evanescent field of the valve induced...

  15. The nuclear magnetic moment of 208Bi and its relevance for a test of bound-state strong-field QED

    Science.gov (United States)

    Schmidt, S.; Billowes, J.; Bissell, M. L.; Blaum, K.; Garcia Ruiz, R. F.; Heylen, H.; Malbrunot-Ettenauer, S.; Neyens, G.; Nörtershäuser, W.; Plunien, G.; Sailer, S.; Shabaev, V. M.; Skripnikov, L. V.; Tupitsyn, I. I.; Volotka, A. V.; Yang, X. F.

    2018-04-01

    The hyperfine structure splitting in the 6p3 3/2 4S → 6p2 7 s 1/2 4P transition at 307 nm in atomic 208Bi was measured with collinear laser spectroscopy at ISOLDE, CERN. The hyperfine A and B factors of both states were determined with an order of magnitude improved accuracy. Based on these measurements, theoretical input for the hyperfine structure anomaly, and results from hyperfine measurements on hydrogen-like and lithium-like 209Bi80+,82+, the nuclear magnetic moment of 208Bi has been determined to μ (208Bi) = + 4.570 (10)μN. Using this value, the transition energy of the ground-state hyperfine splitting in hydrogen-like and lithium-like 208Bi80+,82+ and their specific difference of -67.491(5)(148) meV are predicted. This provides a means for an experimental confirmation of the cancellation of nuclear structure effects in the specific difference in order to exclude such contributions as the cause of the hyperfine puzzle, the recently reported 7-σ discrepancy between experiment and bound-state strong-field QED calculations of the specific difference in the hyperfine structure splitting of 209Bi80+,82+.

  16. An investigation of problematic solids in oil sands processing : separation and characterization of organic matter strongly bound to oil sands solids

    Energy Technology Data Exchange (ETDEWEB)

    McCracken, T.; Woods, J.R.; Kung, J.; Fu, D.; Kingston, D.; Kotlyar, L.S. [National Research Council of Canada, Ottawa, ON (Canada). Inst. for Chemical Process and Environmental Technology; Sparks, B.D. [V. Bede Technical Associates, Ottawa, ON (Canada)

    2009-07-01

    Some of the solid fractions in Athabasca oilsands are associated with strongly bound organic matter that is insoluble in toluene, a solvent commonly used to extract bitumen. The presence of toluene insoluble organic matter (TIOM) increases oil wettability of solids which may adversely affect the release of bitumen from the oilsands. Some of the solid material from the coking operation may be carried over to downstream operations where it can cause fouling. This study used supercritical fluid extraction with methanol to remove TIOM from oilsands after extraction of bitumen by toluene. The methanol extract (ME) is soluble in toluene and was analyzed. Results were compared with corresponding bitumen fractions prepared using a modified HPLC SARA separation technique. Number average molecular weights for the ME were similar to those for resins separated from bitumen. The study also showed that the number of alkyl substituents on aromatic ring systems and the lengths of paraffinic straight chains for resins and ME samples were similar, with only minor differences in terms of H/C atomic ratios and aromaticities. The ME was more polar than the resin and asphaltene fractions, which may explain the selective adsorption of this fraction. tabs., figs.

  17. Diatoms in comets

    Science.gov (United States)

    Hoover, R.; Hoyle, F.; Wallis, M. K.; Wickramasinghe, N. C.

    1986-01-01

    The fossil record of the microscopic algae classified as diatoms suggests they were injected to earth at the Cretaceous boundary. Not only could diatoms remain viable in the cometary environment, but also many species might replicate in illuminated surface layers or early interior layers of cometary ice. Presumably they reached the solar system on an interstellar comet as an already-evolved assemblage of organisms. Diatoms might cause color changes to comet nuclei while their outgassing decays and revives around highly elliptical orbits. Just as for interstellar absorption, high-resolution IR observations are capable of distinguishing whether the 10-micron feature arises from siliceous diatom material or mineral silicates. The 10-30-micron band and the UV 220-nm region can also provide evidence of biological material.

  18. Intracellular metabolic pathway distribution in diatoms and tools for genome-enabled experimental diatom research.

    Science.gov (United States)

    Gruber, Ansgar; Kroth, Peter G

    2017-09-05

    Diatoms are important primary producers in the oceans and can also dominate other aquatic habitats. One reason for the success of this phylogenetically relatively young group of unicellular organisms could be the impressive redundancy and diversity of metabolic isoenzymes in diatoms. This redundancy is a result of the evolutionary origin of diatom plastids by a eukaryote-eukaryote endosymbiosis, a process that implies temporary redundancy of functionally complete eukaryotic genomes. During the establishment of the plastids, this redundancy was partially reduced via gene losses, and was partially retained via gene transfer to the nucleus of the respective host cell. These gene transfers required re-assignment of intracellular targeting signals, a process that simultaneously altered the intracellular distribution of metabolic enzymes compared with the ancestral cells. Genome annotation, the correct assignment of the gene products and the prediction of putative function, strongly depends on the correct prediction of the intracellular targeting of a gene product. Here again diatoms are very peculiar, because the targeting systems for organelle import are partially different to those in land plants. In this review, we describe methods of predicting intracellular enzyme locations, highlight findings of metabolic peculiarities in diatoms and present genome-enabled approaches to study their metabolism.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  19. The Microscopic World of Diatoms

    Science.gov (United States)

    Sultany, Molly; Bixby, Rebecca

    2016-01-01

    For students in biology, chemistry, or environmental science, diatoms offer excellent insight into watershed health and human impact on the environment. Diatoms are found globally in virtually every habitat that has sunlight and moisture, including polar seas, tropical streams, and on moist soils and mosses. Studying diatoms as biological…

  20. Diatoms and the nanotechnology

    International Nuclear Information System (INIS)

    Toekesi, K.; Bereczky, R.J.; Lakatos, Gy.; Cserhati, C.

    2004-01-01

    Complete text of publication follows. During the last decade studies of interactions between highly charged ions (HCI) and solid surfaces are at the center of interest which is partly stimulated by potential future technical application such as nanofabrication. The investigation of the interactions of highly charged ions with internal surfaces recently become available due to the advances in the fabrication of micro- and nanocapillaries. These target materials offer the opportunity to observe 'hollow atom' formation in free space. Hollow atoms are an exotic form of matter where the atomic charge cloud resides in shells with large diameters while the core is virtually empty. In the past there has been an increasing amount of indirect evidence for the existence of this atomic state. Microcapillary transmission promises to provide direct evidence for the hollow atom formation for the first time. Our earlier theoretical descriptions rely on metallic microcapillaries which have proven to be quite successful in comparison with experimental data. However, since very detailed measurements have recently become available for insulator nanocapillaries, critical and precise tests of theory are only now being possible. We note, that the theoretical description of the interaction between the HCI and insulator nanocapillaries is far from being well understood. One of the key point of the experimental investigations is the preparation of the nanocapillaries. In this work we propose an alternative way to prepare insulator nanocapillaries. We take an advantage of the nature that during the evolution the cylindrical shape nanostructure was developed as a truss of diatoms. The truss of the diatoms contains roughly 99 % SiO 2 and in some cases of diatoms it form almost ideal cylindrical shape. As an example Fig. 1 shows the scanning electron micrograph of the diatom. The size of the holes in the truss are in the nanometer range (see Fig. 1a). On the basis of these properties the

  1. Environmental factors influencing diatom communities in Antarctic cryoconite holes

    International Nuclear Information System (INIS)

    Stanish, L F; McKnight, D M; Bagshaw, E A; Tranter, M; Fountain, A G

    2013-01-01

    Cryoconite holes are ice-bound habitats that can act as refuges for aquatic and terrestrial microorganisms on glacier surfaces. In the McMurdo Dry Valleys of Antarctica, these holes are often capped by an ice lid that prevents the exchange of material and gases with the surrounding atmosphere and aquatic environment. Diatoms have been documented in cryoconite holes, and recent findings suggest that these habitats may harbour a distinctive diatom flora compared to the surrounding aquatic environments. In this study, we examined diatom community composition in cryoconite holes and environmental correlates across three glaciers in Taylor Valley, Antarctica. The diatom communities were dominated by two genera, Muelleria and Diadesmis, both of which had high viability and could have been seeded from the surrounding ephemeral streams. The location of the cryoconite hole within the valley was a key determinant of community composition. A diatom species richness gradient was observed that corresponded to distance inland from the coast and co-varied with species richness in streams within the same lake basin. Cryoconite holes that were adjacent to streams with higher diversity displayed greater species richness. However, physical factors, such as the ability to withstand freeze–thaw conditions and to colonize coarse sediments, acted as additional selective filters and influenced diatom diversity, viability and community composition. (letter)

  2. Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms.

    Science.gov (United States)

    Bennke, Christin M; Neu, Thomas R; Fuchs, Bernhard M; Amann, Rudolf

    2013-09-01

    The degradation of diatoms is mainly catalyzed by Bacteroidetes and this process is of global relevance for the carbon cycle. In this study, a combination of catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH) and fluorescent lectin binding analysis (FLBA) was used to identify and map glycoconjugates involved in the specific interactions of Bacteroidetes and diatoms, as well as detritus, at the coastal marine site Helgoland Roads (German Bight, North Sea). The study probed both the presence of lectin-specific extracellular polymeric substances (EPS) of Bacteroidetes for cell attachment and that of glycoconjugates on diatoms with respect to binding sites for Bacteroidetes. Members of the clades Polaribacter and Ulvibacter were shown to form microcolonies within aggregates for which FLBA indicated the presence of galactose containing slime. Polaribacter spp. was shown to bind specifically to the setae of the abundant diatom Chaetoceros spp., and the setae were stained with fucose-specific lectins. In contrast, Ulvibacter spp. attached to diatoms of the genus Asterionella which bound, among others, the mannose-specific lectin PSA. The newly developed CARD-FISH/FLBA protocol was limited to the glycoconjugates that persisted after the initial CARD-FISH procedure. The differential attachment of bacteroidetal clades to diatoms and their discrete staining by FLBA provided evidence for the essential role that formation and recognition of glycoconjugates play in the interaction of bacteria with phytoplankton. Copyright © 2013 Elsevier GmbH. All rights reserved.

  3. Copepod population-specific response to a toxic diatom diet.

    Directory of Open Access Journals (Sweden)

    Chiara Lauritano

    Full Text Available Diatoms are key phytoplankton organisms and one of the main primary producers in aquatic ecosystems. However, many diatom species produce a series of secondary metabolites, collectively termed oxylipins, that disrupt development in the offspring of grazers, such as copepods, that feed on these unicellular algae. We hypothesized that different populations of copepods may deal differently with the same oxylipin-producing diatom diet. Here we provide comparative studies of expression level analyses of selected genes of interest for three Calanus helgolandicus populations (North Sea, Atlantic Ocean and Mediterranean Sea exposed to the same strain of the oxylipin-producing diatom Skeletonema marinoi using as control algae the flagellate Rhodomonas baltica. Expression levels of detoxification enzymes and stress proteins (e.g. glutathione S-transferase, glutathione synthase, superoxide dismutase, catalase, aldehyde dehydrogenases and heat shock proteins and proteins involved in apoptosis regulation and cell cycle progression were analyzed in copepods after both 24 and 48 hours of feeding on the diatom or on a control diet. Strong differences occurred among copepod populations, with the Mediterranean population of C. helgolandicus being more susceptible to the toxic diet compared to the others. This study opens new perspectives for understanding copepod population-specific responses to diatom toxins and may help in underpinning the cellular mechanisms underlying copepod toxicity during diatom blooms.

  4. Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring.

    Science.gov (United States)

    Keck, François; Rimet, Frédéric; Franc, Alain; Bouchez, Agnés

    2016-04-01

    Diatoms include a great diversity of taxa and are recognized as powerful bioindicators in rivers. However using diatoms for monitoring programs is costly and time consuming because most of the methodologies necessitate species-level identification. This raises the question of the optimal trade-off between taxonomic resolution and bioassessment quality. Phylogenetic tools may form the bases of new, more efficient approaches for biomonitoring if relationships between ecology and phylogeny can be demonstrated. We estimated the ecological optima of 127 diatom species for 19 environmental parameters using count data from 2119 diatom communities sampled during eight years in eastern France. Using uni- and multivariate analyses, we explored the relationships between freshwater diatom phylogeny and ecology (i.e., the phylogenetic signal). We found a significant phylogenetic signal for many of the ecological optima that were tested, but the strength of the signal varied significantly from one trait to another. Multivariate analysis also showed that the multidimensional ecological niche of diatoms can be strongly related to phylogeny. The presence of clades containing species that exhibit homogeneous ecology suggests that phylogenetic information can be useful for aquatic biomonitoring. This study highlights the presence of significant patterns of ecological optima for freshwater diatoms in relation to their phylogeny. These results suggest the presence of a signal above the species level, which is encouraging for the development of simplified methods for biomonitoring survey.

  5. Effect of the Silica Content of Diatoms on Protozoan Grazing

    Directory of Open Access Journals (Sweden)

    Shuwen Zhang

    2017-06-01

    Full Text Available This study examined the effect that silica content in diatom cells has on the behavior of protists. The diatoms Thalassiosira weissflogii and T. pseudonana were cultured in high or low light conditions to achieve low and high silica contents, respectively. These cells were then fed to a heterotrophic dinoflagellate Noctiluca scintillans and a ciliate Euplotes sp. in single and mixed diet experiments. Our results showed that in general, N. scintillans and Euplotes sp. both preferentially ingested the diatoms with a low silica content rather than those with a high silica content. However, Euplotes sp. seemed to be less influenced by the silica content than was N. scintillans. In the latter case, the clearance and ingestion rate of the low silica diatoms were significantly higher, both in the short (6-h and long (1-d duration grazing experiments. Our results also showed that N. scintillans required more time to digest the high silica-containing cells. As the high silica diatoms are harder to digest, this might explain why N. scintillans exhibits a strong preference for the low silica prey. Thus, the presence of high silica diatoms might limit the ability of the dinoflagellate to feed. Our findings suggest that the silica content of diatoms affects their palatability and digestibility and, consequently, the grazing activity and selectivity of protozoan grazers.

  6. Using benthic diatom assemblages to assess human impacts on streams across a rural to urban gradient.

    Science.gov (United States)

    Yang, Ying; Cao, Jin-Xiang; Pei, Guo-Feng; Liu, Guo-Xing

    2015-11-01

    Benthic diatom assemblages on the natural substrata were investigated at 21 sites of the Ganhe River watershed (China) once per season and in addition, early spring in 2013. A total of 487 diatom taxa from 36 genera were identified during five investigations. The assemblages were dominated by Achnanthidium minutissimum (Kützing) Czarnecki and Cocconeis placentula in the rural reach, whereas Navicula, Nitzschia, and Gomphonema species were characteristic of urbanized sites. Our results suggest that biodiversity was positively related to high nutrient levels and strongly negatively related to diatom-based indices. The periphyton biomass (expressed as chlorophyll a and ash-free dry mass) was not related to water quality. Canonical correspondence analysis (CCA) showed that the nutrient concentration gradient was the most important factor that affected the diatom assemblage composition and species distribution. The diatom-based indices (specific pollution sensitivity index (IPS), biological diatom index (IBD), and trophic diatom index (TDI)) were significantly positively correlated with water quality and are adequate for use in China. Slight changes in the biodiversity and diatom-based indices followed a temporal pattern. The species composition was less related to the season or hydrological characteristics of the river but more strongly related to differences in the trophic status. In this region, urbanization masked the impact of rural land use on benthic diatoms. The research will expand the understanding of using benthic diatom assemblages for water quality monitoring in urban streams and improve watershed-scale management and conservation efforts in the Ganhe River, China.

  7. Electric dipole moment of diatomic molecules

    International Nuclear Information System (INIS)

    Rosato, A.

    1983-01-01

    The electric dipole moment of some diatomic molecules is calculated using the Variational Cellular Method. The results obtained for the CO, HB, HF and LiH molecules are compared with other calculations and with experimental data. It is shown that there is strong dependence of the electric dipole moment with respect to the geometry of the cells. The possibility of fixing the geometry of the problem by giving the experimental value of the dipole moment is discussed. (Author) [pt

  8. Electric dipole moment of diatomic molecules

    International Nuclear Information System (INIS)

    Rosato, A.

    1983-01-01

    The electric dipole moment of some diatomic molecules is calculated using the Variational Cellular Method. The results obtained for the molecules CO, HB, HF and LiH are compared with other calculations and with experimental data. It is shown that there is strong dependence of the electric dipole moment with respect to the geometry of the cells. It is discussed the possibility of fixing the geometry of the problem by giving the experimental value of the dipole moment. (Author) [pt

  9. Photosynthetic Pigments in Diatoms

    OpenAIRE

    Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

    2015-01-01

    Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvestin...

  10. Photosynthetic Pigments in Diatoms

    Directory of Open Access Journals (Sweden)

    Paulina Kuczynska

    2015-09-01

    Full Text Available Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

  11. Photosynthetic Pigments in Diatoms

    Science.gov (United States)

    Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

    2015-01-01

    Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries. PMID:26389924

  12. Photosynthetic Pigments in Diatoms.

    Science.gov (United States)

    Kuczynska, Paulina; Jemiola-Rzeminska, Malgorzata; Strzalka, Kazimierz

    2015-09-16

    Photosynthetic pigments are bioactive compounds of great importance for the food, cosmetic, and pharmaceutical industries. They are not only responsible for capturing solar energy to carry out photosynthesis, but also play a role in photoprotective processes and display antioxidant activity, all of which contribute to effective biomass and oxygen production. Diatoms are organisms of a distinct pigment composition, substantially different from that present in plants. Apart from light-harvesting pigments such as chlorophyll a, chlorophyll c, and fucoxanthin, there is a group of photoprotective carotenoids which includes β-carotene and the xanthophylls, diatoxanthin, diadinoxanthin, violaxanthin, antheraxanthin, and zeaxanthin, which are engaged in the xanthophyll cycle. Additionally, some intermediate products of biosynthetic pathways have been identified in diatoms as well as unusual pigments, e.g., marennine. Marine algae have become widely recognized as a source of unique bioactive compounds for potential industrial, pharmaceutical, and medical applications. In this review, we summarize current knowledge on diatom photosynthetic pigments complemented by some new insights regarding their physico-chemical properties, biological role, and biosynthetic pathways, as well as the regulation of pigment level in the cell, methods of purification, and significance in industries.

  13. An improved method for the diatom test utilizing DNA binding ability of silica.

    Science.gov (United States)

    Seo, Yasuhisa; Ichida, Daisuke; Sato, Shingo; Kuroki, Kohji; Kishida, Tetsuko

    2014-05-01

    In order to devise a better forensic test for diatoms, the DNA binding ability of the diatom frustule constructing by silica, in the presence of chaotropic ions were utilized. It was proved that the diatoms were able to be captured via λDNA using silica-coated magnetic beads (Mag beads), followed by isolation and purification from the Mag beads as a solid phase by substituting the chaotropic agent with ultrapure water. Five cases of drowning, three in freshwater and two in seawater, were applied to the present method and similar results as the usual diatom test were obtained. Specimens of lung and other organs were rendered clearly visible, with elimination of foreign impurities. The present method appears applicable for detection of diatoms indirectly using PCR amplification of bound DNA or directly staining of the DNA. © 2014 American Academy of Forensic Sciences.

  14. Using diatom indices for water quality assessment in a subtropical river, China.

    Science.gov (United States)

    Tan, Xiang; Sheldon, Fran; Bunn, Stuart E; Zhang, Quanfa

    2013-06-01

    Diatoms have been regularly used as bioindicators to assess water quality of surface waters. However, diatom-based indices developed for a specific geographic region may not be appropriate elsewhere. We sampled benthic diatom assemblages in the upper Han River, a subtropical river in China, to evaluate applicability of 14 diatom-based indices used worldwide for water quality assessment. A total of 194 taxa from 31 genera were identified in the dry season and 139 taxa from 23 genera in the wet season. During the dry season, significant relationships were found for all but one of the diatom-based indices (Index Diatom Artois-Picardie) with one or more physical and chemical variables including nutrients and ion concentrations in river waters. The Biological Diatom Index (IBD) and diatom-based eutrophication/pollution index (EPI-D) were strongly related to trophic status and ionic content, while Watanabe's Index was related to organic pollution and conductivity. Yet, the diatom indices showed weak relationships with physical and chemical variables during the wet season. It suggests that diatom-based indices developed in Europe can be applied with confidence as bioindicators of water quality in subtropical rivers of China, at least during base-flow conditions.

  15. Uniqueness of bounded observables

    Energy Technology Data Exchange (ETDEWEB)

    Navara, M. [Czech Technical Univ., Praha (Czech Republic). Dept. of Math.

    1995-09-01

    By an application of a new construction technique we construct a {sigma}-orthomodular lattice with a strongly order-determining set of states and two bounded observables whose expectations are equal at each state. This answers negatively the uniqueness problem for bounded observables, formulated by S. Gudder. (orig.).

  16. Marine chronology based on C-14 dating on diatoms proteins

    International Nuclear Information System (INIS)

    Hatte, C.; Hodgins, G.; Jull, A.J.T.; Bishop, B.; Hatte, C.; Tesson, B.

    2008-01-01

    We present a new method of obtaining radiocarbon dates for proteins intrinsic to diatom frustules (sillafin). By asserting age models for sediment core samples that lack calcium carbonate, this method will improve interpretations of diatom-based paleo-proxies for either marine or lacustrine. In preparation for radiocarbon dating by Accelerator Mass Spectrometry, diatoms were concentrated from core sediment samples. The diatoms frustules were freed of any surface-bound organic matter, through chemical and physical treatments that will be discussed later in this paper. Compounds intrinsic to diatoms frustules were released from their opal matrix by HF dissolution. This method differs from approaches based on specific compound extractions from complex organic mixture by preparative chromatography because we eliminated most of the contaminated organic matter. The advantage of our method is that it does not require heavy cost investment and it can be added to a preparative chromatography protocol to ensure dating reliability. This method was applied to samples from a marine core collected in the Southern Ocean, that spans the last climatic cycle. We report on the radiocarbon dating results obtained on organic matter at each step of the chemical treatment, from bulk to sillafin and their interpretation. (authors)

  17. Interactions between diatoms and bacteria.

    Science.gov (United States)

    Amin, Shady A; Parker, Micaela S; Armbrust, E Virginia

    2012-09-01

    Diatoms and bacteria have cooccurred in common habitats for hundreds of millions of years, thus fostering specific associations and interactions with global biogeochemical consequences. Diatoms are responsible for one-fifth of the photosynthesis on Earth, while bacteria remineralize a large portion of this fixed carbon in the oceans. Through their coexistence, diatoms and bacteria cycle nutrients between oxidized and reduced states, impacting bioavailability and ultimately feeding higher trophic levels. Here we present an overview of how diatoms and bacteria interact and the implications of these interactions. We emphasize that heterotrophic bacteria in the oceans that are consistently associated with diatoms are confined to two phyla. These consistent bacterial associations result from encounter mechanisms that occur within a microscale environment surrounding a diatom cell. We review signaling mechanisms that occur in this microenvironment to pave the way for specific interactions. Finally, we discuss known interactions between diatoms and bacteria and exciting new directions and research opportunities in this field. Throughout the review, we emphasize new technological advances that will help in the discovery of new interactions. Deciphering the languages of diatoms and bacteria and how they interact will inform our understanding of the role these organisms have in shaping the ocean and how these interactions may change in future oceans.

  18. Controlling dynamics in diatomic systems

    Indian Academy of Sciences (India)

    Keywords. Iterative method; optimal control theory; diatomic systems; quantum control. Abstract. Controlling molecular energetics using laser pulses is exemplified for nuclear motion in two different diatomic systems. The problem of finding the optimized field for maximizing a desired quantum dynamical target is formulated ...

  19. Interactions between Diatoms and Bacteria

    Science.gov (United States)

    Amin, Shady A.; Parker, Micaela S.

    2012-01-01

    Summary: Diatoms and bacteria have cooccurred in common habitats for hundreds of millions of years, thus fostering specific associations and interactions with global biogeochemical consequences. Diatoms are responsible for one-fifth of the photosynthesis on Earth, while bacteria remineralize a large portion of this fixed carbon in the oceans. Through their coexistence, diatoms and bacteria cycle nutrients between oxidized and reduced states, impacting bioavailability and ultimately feeding higher trophic levels. Here we present an overview of how diatoms and bacteria interact and the implications of these interactions. We emphasize that heterotrophic bacteria in the oceans that are consistently associated with diatoms are confined to two phyla. These consistent bacterial associations result from encounter mechanisms that occur within a microscale environment surrounding a diatom cell. We review signaling mechanisms that occur in this microenvironment to pave the way for specific interactions. Finally, we discuss known interactions between diatoms and bacteria and exciting new directions and research opportunities in this field. Throughout the review, we emphasize new technological advances that will help in the discovery of new interactions. Deciphering the languages of diatoms and bacteria and how they interact will inform our understanding of the role these organisms have in shaping the ocean and how these interactions may change in future oceans. PMID:22933565

  20. Diatomic gasdynamic lasers

    International Nuclear Information System (INIS)

    McKenzie, R.L.

    1971-12-01

    Predictions from a numerical model of the vibrational relaxation of anharmonic diatomic oscillators in supersonic expansions are used to show the extent to which the small anharmonicity of gases like CO can cause significant over-populations of upper vibrational states. When mixtures of CO and N 2 are considered, radiative gain on many of the vibration-rotation transitions of CO is predicted. Experiments are described that qualitatively verify the predictions by demonstrating laser oscillation in CO-N 2 expansions. The resulting CO-N 2 gasdynamic laser displays performance characteristics that equal or exceed those of similar CO 2 lasers

  1. Diatomic gasdynamic lasers.

    Science.gov (United States)

    Mckenzie, R. L.

    1972-01-01

    Predictions from a numerical model of the vibrational relaxation of anharmonic diatomic oscillators in supersonic expansions are used to show the extent to which the small anharmonicity of gases like CO can cause significant overpopulations of upper vibrational states. When mixtures of CO and N2 are considered, radiative gain on many of the vibration-rotation transitions of CO is predicted. Experiments are described that qualitatively verify the predictions by demonstrating laser oscillation in CO-N2 expansions. The resulting CO-N2 gasdynamic laser displays performance characteristics that equal or exceed those of similar CO2 lasers.

  2. Crystal structure of the complex of carboxypeptidase A with a strongly bound phosphonate in a new crystalline form: comparison with structures of other complexes.

    Science.gov (United States)

    Kim, H; Lipscomb, W N

    1990-06-12

    O-[[(1R)-[[N-(Phenylmethoxycarbonyl)-L-alanyl]amino]ethyl] hydroxyphosphinyl]-L-3-phenyllacetate [ZAAP(O)F], an analogue of (benzyloxycarbonyl)-Ala-Ala-Phe or (benzyloxycarbonyl)-Ala-Ala-phenyllactate, binds to carboxypeptidase A with great affinity (Ki = 3 pM). Similar phosphonates have been shown to be transition-state analogues of the CPA-catalyzed hydrolysis [Hanson, J. E., Kaplan, A. P., & Bartlett, P. A. (1989) Biochemistry 28, 6294-6305]. In the present study, the structure of the complex of this phosphonate with carboxypeptidase A has been determined by X-ray crystallography to a resolution of 2.0 A. The complex crystallizes in the space group P2(1)2(1)2(1) with cell dimensions a = 61.9 A, b = 67.2 A, and c = 76.2 A. The structure of the complex was solved by molecular replacement. Refinement of the structure against 20,776 unique reflections between 10.0 and 2.0 A yields a crystallographic residual of 0.193, including 140 water molecules. The two phosphinyl oxygens of the inhibitor bind to the active-site zinc at 2.2 A on the electrophilic (Arg-127) side and 3.1 A on the nucleophilic (Glu-270) side. Various features of the binding mode of this phosphonate inhibitor are consistent with the hypothesis that carboxypeptidase A catalyzed hydrolysis proceeds through a general-base mechanism in which the carbonyl carbon of the substrate is attacked by Zn-hydroxyl (or Zn-water). An unexpected feature of the bound inhibitor, the cis carbamoyl ester bond at the benzyloxycarbonyl linkage to alanine, allows the benzyloxycarbonyl phenyl ring of the inhibitor to interact favorably with Tyr-198. This complex structure is compared with previous structures of carboxypeptidase A, including the complexes with the potato inhibitor, a hydrated keto methylene substrate analogue, and a phosphonamidate inhibitor. Comparisons are also made with the complexes of thermolysin with some phosphonamidate inhibitors.

  3. Benthic Diatom Based Indices for Water Quality Assessment in Two Subtropical Streams.

    Science.gov (United States)

    Tan, Xiang; Zhang, Quanfa; Burford, Michele A; Sheldon, Fran; Bunn, Stuart E

    2017-01-01

    Benthic diatoms have been universally used as indicators to assess water quality in lotic ecosystems. However, most diatom-based indices developed in Europe have not been widely used or tested in other continents such as Asia or Oceania. This study compared the performance of 14 widely-applied diatom indices in assessing ecological conditions in subtropical streams in South East Queensland (SEQ) in Australia and in the upper Han River in China. Most water quality variables in the upper Han River including dissolved organic carbon (DOC), total nitrogen (TN), and soluble reactive phosphorus (SRP) had strong relationships with at least one diatom index, with the exception of IDAP (Index Diatom Artois-Picardie), and TDI (Trophic Diatom Index). However, in SEQ, most of the environmental variables including DOC, ammonia nitrogen (NH 4 -N), TN, SRP, and electrical conductivity (EC) showed no significant relationships with diatom indices, and the DI-CH (Swiss Diatom Index) and WAT (Watanabe's Index) were unrelated to any of the variables examined. Only pH and nitrite or nitrate nitrogen (NO X -N) were significant predictors of several diatom indices in SEQ, especially TID (Rott trophic index). In the upper Han River, much of the spatial variation in most diatom indices was explained by proximate determinants alone, including EC, DOC, dissolved oxygen (DO) or SRP, or a combination of ultimate (canopy, forest) and proximate factors ( R 2 in most models> 0.75). Most diatom indices performed as predicted in the upper Han River where nutrient and organic matter pollution was relatively high, and variation in pH low. However, the indices performed poorly in SEQ where the water quality gradient was low and instead most responded to spatial variation in pH. This finding serves as a caution to the application of diatom indices in river basins that fall outside of the range of water quality values of the systems in which they originally developed.

  4. Stuart R. Stidolph diatom atlas

    Science.gov (United States)

    Stidolph, S.R.; Sterrenburg, F.A.S.; Smith, K.E.L.; Kraberg, A.

    2012-01-01

    The "Stuart R. Stidolph Diatom Atlas" is a comprehensive volume of diatom taxa identified and micrographed by Stuart R. Stidoph during the 1980s and 1990s. The samples were collected from marine coasts of various geographic regions within tropical and subtropical climates. The plates included within this report have never been published and are being published by the USGS as an online reference so that others may have access to this incredible collection.

  5. Towards a representative periphytic diatom sample

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available The need to acquire a representative periphytic diatom sample for river water quality monitoring has been recognised in the development of existing diatom indices, important in the development and employment of diatom monitoring tools for the Water Framework Directive. In this study, a nested design with replication is employed to investigate the magnitude of variation in diatom biomass, composition and Trophic Diatom Index at varying scales within a small chalk river. The study shows that the use of artificial substrates may not result in diatom communities that are typical of the surrounding natural substrates. Periphytic diatom biomass and composition varies between artificial and natural substrates, riffles and glides and between two stretches of the river channel. The study also highlights the existence of high variation in diatom frustule frequency and biovolume at the individual replicate scale which may have implications for the use of diatoms in routine monitoring.

  6. Diatoms - nature's own nano-porous silica structures

    International Nuclear Information System (INIS)

    Butcher, K.S.A.; Phillips, M.R.

    2003-01-01

    Full text: We have investigated the luminescent output from the porous silica shells of the small aquatic plants called diatoms. Two closely spaced emission peaks, one orange peak at 620-640 nm (2.0 - 1.95 eV) and the other a yellow peak at 580 nm (2.15 eV), were observed by cathodoluminescence. Although the 2.0 - 1.95 eV peak has been commonly observed for silica based structures and may be associated with non-bridging oxygen hole centres, or a closely related variant, the 2.15 eV emission is not readily explained by this phenomenology and may be related to the diatom's porous nanostructure. Photoluminescence measurements, using the 325 nm line of a He-Cd laser as the excitation source, resulted in a strong blue emission with neither the orange nor yellow emissions, seen with cathodoluminescence, being present. The silica structures made available by the particular diatoms studied here were therefore shown to have very rich luminescent output characteristics. Coupled with the diversity of diatomic structure and porosity available for further study, this suggests that diatoms may have some potential for photonic applications

  7. Tunneling Ionization of Diatomic Molecules

    DEFF Research Database (Denmark)

    Svensmark, Jens Søren Sieg

    2016-01-01

    When a molecule is subject to a strong laser field, there is a probability that an electron can escape, even though the electrons are bound by a large potential barrier. This is possible because electrons are quantum mechanical in nature, and they are therefore able to tunnel through potential...... of tunneling ionizaion of molecules is presented and the results of numerical calculations are shown. One perhaps surprising result is, that the frequently used Born-Oppenheimer approximation breaks down for weak fields when describing tunneling ionization. An analytic theory applicable in the weak-field limit...

  8. Cenozoic planktonic marine diatom diversity and correlation to climate change.

    Directory of Open Access Journals (Sweden)

    David Lazarus

    Full Text Available Marine planktonic diatoms export carbon to the deep ocean, playing a key role in the global carbon cycle. Although commonly thought to have diversified over the Cenozoic as global oceans cooled, only two conflicting quantitative reconstructions exist, both from the Neptune deep-sea microfossil occurrences database. Total diversity shows Cenozoic increase but is sample size biased; conventional subsampling shows little net change. We calculate diversity from a separately compiled new diatom species range catalog, and recalculate Neptune subsampled-in-bin diversity using new methods to correct for increasing Cenozoic geographic endemism and decreasing Cenozoic evenness. We find coherent, substantial Cenozoic diversification in both datasets. Many living cold water species, including species important for export productivity, originate only in the latest Miocene or younger. We make a first quantitative comparison of diatom diversity to the global Cenozoic benthic ∂(18O (climate and carbon cycle records (∂(13C, and 20-0 Ma pCO2. Warmer climates are strongly correlated with lower diatom diversity (raw: rho = .92, p.9, detrended r>.6, all p<.001, but only weakly over the earlier Cenozoic, suggesting increasingly strong linkage of diatom and climate evolution in the Neogene. Our results suggest that many living marine planktonic diatom species may be at risk of extinction in future warm oceans, with an unknown but potentially substantial negative impact on the ocean biologic pump and oceanic carbon sequestration. We cannot however extrapolate our my-scale correlations with generic climate proxies to anthropogenic time-scales of warming without additional species-specific information on proximate ecologic controls.

  9. Diatom genomics: genetic acquisitions and mergers.

    Science.gov (United States)

    Nisbet, R Ellen R; Kilian, Oliver; McFadden, Geoffrey I

    2004-12-29

    Diatom algae arose by two-step endosymbiosis. The complete genome of the diatom Thalassiosira pseudonana has now been sequenced, allowing us to reconstruct the remarkable intracellular gene transfers that occurred during this convoluted cellular evolution.

  10. Bounding the $\

    CERN Document Server

    Gutiérrez-Rodríguez, A

    2003-01-01

    A bound on the nu /sup tau / magnetic moment is calculated through the reaction e/sup +/e/sup -/ to nu nu gamma at the Z/sub 1/-pole, and in the framework of a left-right symmetric model at LEP energies. We find that the bound is almost independent of the mixing angle phi of the model in the allowed experimental range for this parameter. (31 refs).

  11. Colloquium on diatom-copepod interactions

    DEFF Research Database (Denmark)

    Paffenhofer, G.A.; Ianora, A.; Miralto, A.

    2005-01-01

    to enhance our understanding of such interactions. These included (1) toxic effects of diatom metabolites on copepods, particularly reproduction, and (2) nutritional effects of diatoms on juvenile to adult copepods. Key issues involved in the impact of diatoms on the dynamics of natural plankton communities...

  12. Diatomic interaction potential theory applications

    CERN Document Server

    Goodisman, Jerry

    2013-01-01

    Diatomic Interaction Potential Theory, Volume 2: Applications discusses the variety of applicable theoretical material and approaches in the calculations for diatomic systems in their ground states. The volume covers the descriptions and illustrations of modern calculations. Chapter I discusses the calculation of the interaction potential for large and small values of the internuclear distance R (separated and united atom limits). Chapter II covers the methods used for intermediate values of R, which in principle means any values of R. The Hartree-Fock and configuration interaction schemes des

  13.  Serial replacement of diatom endosymbiont in two freshwater dinoflagellates, Peridiniopsis spp., (Peridiniales, Dinophyceae)

    DEFF Research Database (Denmark)

    Takano, Y.; Hansen, Gert; Fujita, D.

    2008-01-01

    structure and possessed an endosymbiotic diatom. The diatom endosymbiont, which contained a eukaryotic nucleus, chloroplasts and mitochondria, was separated from the dinoflagellate cytoplasm by a single unit membrane. The dinoflagellate cytoplasm contained a triple-membrane-bound eyespot, in addition......Two freshwater armoured dinoflagellates, Peridiniopsis cf. kevei from Japan and Peridiniopsis penardii from Japan and Italy, were examined by means of light, scanning and transmission electron microscopy. Morphological studies indicated that the two dinoflagellates had similar type of cellular...

  14. Controlling dynamics in diatomic systems

    Indian Academy of Sciences (India)

    WINTEC

    2Center for Computational Natural Sciences and Bioinformatics,. International Institute of Information Technology, Hyderabad 500 032 ..... journal.34. 3. The control system. We have chosen two diatomic systems for studying the vibrational excitations from an initial state to a target state in a Morse potential of the HF and OH.

  15. Automated measurement of diatom size

    Science.gov (United States)

    Spaulding, Sarah A.; Jewson, David H.; Bixby, Rebecca J.; Nelson, Harry; McKnight, Diane M.

    2012-01-01

    Size analysis of diatom populations has not been widely considered, but it is a potentially powerful tool for understanding diatom life histories, population dynamics, and phylogenetic relationships. However, measuring cell dimensions on a light microscope is a time-consuming process. An alternative technique has been developed using digital flow cytometry on a FlowCAM® (Fluid Imaging Technologies) to capture hundreds, or even thousands, of images of a chosen taxon from a single sample in a matter of minutes. Up to 30 morphological measures may be quantified through post-processing of the high resolution images. We evaluated FlowCAM size measurements, comparing them against measurements from a light microscope. We found good agreement between measurement of apical cell length in species with elongated, straight valves, including small Achnanthidium minutissimum (11-21 µm) and largeDidymosphenia geminata (87–137 µm) forms. However, a taxon with curved cells, Hannaea baicalensis (37–96 µm), showed differences of ~ 4 µm between the two methods. Discrepancies appear to be influenced by the choice of feret or geodesic measurement for asymmetric cells. We describe the operating conditions necessary for analysis of size distributions and present suggestions for optimal instrument conditions for size analysis of diatom samples using the FlowCAM. The increased speed of data acquisition through use of imaging flow cytometers like the FlowCAM is an essential step for advancing studies of diatom populations.

  16. Luminescence properties of a nanoporous freshwater diatom.

    Science.gov (United States)

    Goswami, Bondita; Choudhury, Amarjyoti; Buragohain, Alak K

    2012-01-01

    Freshwater diatom frustules show special optical properties. In this paper we observed luminescence properties of the freshwater diatom Cyclotella meneghiniana. To confirm the morphological properties we present scanning electron microscopy (SEM) images. X-ray diffraction (XRD) studies were carried out to visualize the structural properties of the frustules, confirming that silica present in diatom frustules crystallizes in an α-quartz structure. Study of the optical properties of the silica frustules of diatoms using ultra-violet-visible (UV-vis) spectroscopy and photoluminescence spectroscopy confirmed that the diatom C. meneghiniana shows luminescence in the blue region of the electromagnetic spectrum when irradiated with UV light. This property of diatoms can be exploited to obtain many applications in day-to-day life. Also, using time-resolved photoluminescence spectroscopy (TRPL) it was confirmed that this species of diatom shows bi-exponential decay. Copyright © 2011 John Wiley & Sons, Ltd.

  17. Chronic effects of atrazine exposure and recovery in freshwater benthic diatoms from two communities with different pollution histories.

    Science.gov (United States)

    Wood, Rebecca J; Mitrovic, Simon M; Lim, Richard P; Kefford, Ben J

    2017-08-01

    Diffuse agricultural runoff into rivers can result in contamination with herbicides for prolonged periods of time. Chronic exposure to herbicides has the potential to alter toxic impacts in primary producers such as benthic diatoms. Determining how individual diatom taxa respond to herbicide exposure over varied exposure durations is essential for assessing herbicide impacts. This study investigated the responses of various benthic diatom taxa and effects at the community level over 12days of atrazine exposure. Diatom communities were collected from two sites with differing exposure histories; a relatively unpolluted site (Alligator Creek) and an agricultural stream (Barratta Creek) known to be polluted by atrazine and other herbicides. Diatom community composition and the proportion of healthy cells per taxon were assessed at 0, 2, 3, 6, 9 and 12days of atrazine exposure. Pollution history altered the response of the diatom community to atrazine exposure. In the Alligator Creek diatom community there was a shift in composition towards more tolerant taxa and the loss of sensitive taxa in atrazine exposed treatments. The sensitive taxon (Gomphonema truncatum) was consistently affected by atrazine toxicity. Conversely, the polluted Barratta Creek diatom community was not strongly affected by atrazine exposure. Our study shows that during chronic atrazine exposure some taxa demonstrated the ability to recover despite initial toxicity response. Recovery could be an important trait for understanding the ecological effect of herbicide exposure on diatom species in nature and in applied circumstances such as biomonitoring indices. Copyright © 2017 Elsevier B.V. All rights reserved.

  18. Modulation of lipid biosynthesis by stress in diatoms.

    Science.gov (United States)

    Sayanova, Olga; Mimouni, Virginie; Ulmann, Lionel; Morant-Manceau, Annick; Pasquet, Virginie; Schoefs, Benoît; Napier, Johnathan A

    2017-09-05

    Diatoms are responsible for up to 40% of the carbon fixation in our oceans. The fixed carbon is moved through carbon metabolism towards the synthesis of organic molecules that are consumed through interlocking foodwebs, and this process is strongly impacted by the abiotic environment. However, it has become evident that diatoms can be used as 'platform' organisms for the production of high valuable bio-products such as lipids, pigments and carbohydrates where stress conditions can be used to direct carbon metabolism towards the commercial production of these compounds. In the first section of this review, some aspects of carbon metabolism in diatoms and how it is impacted by environmental factors are briefly described. The second section is focused on the biosynthesis of lipids and in particular omega-3 long-chain polyunsaturated fatty acids and how low temperature stress impacts on the production of these compounds. In a third section, we review the recent advances in bioengineering for lipid production. Finally, we discuss new perspectives for designing strains for the sustainable production of high-value lipids.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  19. Large centric diatoms allocate more cellular nitrogen to photosynthesis to counter slower RUBISCO turnover rates

    Directory of Open Access Journals (Sweden)

    Yaping eWu

    2014-12-01

    Full Text Available Diatoms contribute ~40% of primary production in the modern ocean and encompass the largest cell size range of any phytoplankton group. Diatom cell size influences their nutrient uptake, photosynthetic light capture, carbon export efficiency, and growth responses to increasing pCO2. We therefore examined nitrogen resource allocations to the key protein complexes mediating photosynthesis across six marine centric diatoms, spanning 5 orders of magnitude in cell volume, under past, current and predicted future pCO2 levels, in balanced growth under nitrogen repletion. Membrane bound photosynthetic protein concentrations declined with cell volume in parallel with cellular concentrations of total protein, total nitrogen and chlorophyll. Larger diatom species, however, allocated a greater fraction (by 3.5 fold of their total cellular nitrogen to the soluble RUBISCO carbon fixation complex than did smaller species. Carbon assimilation per unit of RUBISCO large subunit (C RbcL-1 s-1 decreased with cell volume, from ~8 to ~2 C RbcL-1 s-1 from the smallest to the largest cells. Whilst a higher allocation of cellular nitrogen to RUBISCO in larger cells increases the burden upon their nitrogen metabolism, the higher RUBISCO allocation buffers their lower achieved RUBISCO turnover rate to enable larger diatoms to maintain carbon assimilation rates per total protein comparable to small diatoms. Individual species responded to increased pCO2, but cell size effects outweigh pCO2 responses across the diatom species size range examined. In large diatoms a higher nitrogen cost for RUBISCO exacerbates the higher nitrogen requirements associated with light absorption, so the metabolic cost to maintain photosynthesis is a cell size-dependent trait.

  20. Factors affecting diatom dynamics in the alpine lakes of Colbricon (Northern Italy: a 10-year survey

    Directory of Open Access Journals (Sweden)

    Andrea SQUARTINI

    2010-08-01

    Full Text Available Planktonic diatom fluctuations, their diversity and relationships with environmental variables were analyzed for ten consecutive years in Colbricon Superiore and Inferiore, two small high-mountain lakes located in the Paneveggio-Pale di S. Martino Natural Park (Trento, Italy offering the rare opportunity to study two lakes differing only by area and volume and being in this respect in a ratio of 2:1 and 3:1 respectively. The lakes were monitored and sampled monthly, during ten ice-free periods, from 1998 to 2007, to correlate water chemical and physical characteristics with the recorded diversity and abundance of planktonic diatoms. 55 taxa of Bacillariophyceae were found, among which Cyclotella spp., Tabellaria flocculosa and Fragilaria spp. were dominant. Both chemical data and diatom community composition are consistent with well buffered mesotrophic lakes. We found statistical evidence that the development of diatoms was strongly related to the variation of water temperature. Furthermore, several different signatures of the diatom-enviroment relationships arose between the two lakes as e.g., a negative correlation between diatom development and water transparency was occurring in the larger lake only. As a result, the average diatom density recorded over the 10 years period were 1.17 fold higher than in the lower lake which corresponds to a 1.65 fold higher biomass. A size-dependent tighter response of the phytoplankton to chemical parameters appears to operate in the smaller waterbody compared to the larger one.

  1. Investigation of magnetization dynamics in 2D Ni80Fe20 diatomic nanodot arrays

    International Nuclear Information System (INIS)

    De, Anulekha; Mondal, Sucheta; Banerjee, Chandrima; Chaurasiya, Avinash K; Mandal, Ruma; Barman, Anjan; Otani, Yoshichika; Mitra, Rajib K

    2017-01-01

    Magnetization dynamics in Ni 80 Fe 20 (Py) diatomic nanodots (nanodots of the same thickness but with large and small diameters that are closely placed to each other so as to act as a diatomic basis structure) embedded in 2D arrays have been investigated by the Brillouin light scattering technique. A distinct variation of resonant mode characteristics for different in-plane bias magnetic field applied along two different orientations of the lattice has been observed. Micromagnetic simulations reproduced the observed dynamical behaviour and revealed the variation of spatial distribution of collective modes of constituent single nanodots with different diameter and a diatomic unit forming the large array to understand the evolution of the magnetization dynamics from a single dot to the large array via a diatomic unit. The changes in mode frequency, spatial profiles of the modes, and appearance of new modes in a diatomic unit and its array from that of the constituent single dots indicate the strong magnetostatic interaction among the dots within the diatomic unit. Also, the occurrence of the new interacting mode at different frequencies for different orientations of the bias field indicates the change in the nature of interaction among the dots within the diatomic unit with bias magnetic field. The mode profiles also show distinct behaviour for smooth and rough-edged dots. This work motivates the study of magnonic band structure formation of such a dipolarly coupled nanodot array containing a complex double-dot unit cell. (paper)

  2. Architecture and material properties of diatom shells provide effective mechanical protection

    Science.gov (United States)

    Hamm, Christian E.; Merkel, Rudolf; Springer, Olaf; Jurkojc, Piotr; Maier, Christian; Prechtel, Kathrin; Smetacek, Victor

    2003-02-01

    Diatoms are the major contributors to phytoplankton blooms in lakes and in the sea and hence are central in aquatic ecosystems and the global carbon cycle. All free-living diatoms differ from other phytoplankton groups in having silicified cell walls in the form of two `shells' (the frustule) of manifold shape and intricate architecture whose function and role, if any, in contributing to the evolutionary success of diatoms is under debate. We explored the defence potential of the frustules as armour against predators by measuring their strength. Real and virtual loading tests (using calibrated glass microneedles and finite element analysis) were performed on centric and pennate diatom cells. Here we show that the frustules are remarkably strong by virtue of their architecture and the material properties of the diatom silica. We conclude that diatom frustules have evolved as mechanical protection for the cells because exceptional force is required to break them. The evolutionary arms race between diatoms and their specialized predators will have had considerable influence in structuring pelagic food webs and biogeochemical cycles.

  3. Proteomics studies on stress responses in diatoms.

    Science.gov (United States)

    Muhseen, Ziyad Tariq; Xiong, Qian; Chen, Zhuo; Ge, Feng

    2015-12-01

    Diatoms are a highly diverse group of eukaryotic phytoplankton that are distributed throughout marine and freshwater environments and are believed to be responsible for approximately 40% of the total marine primary productivity. The ecological success of diatoms suggests that they have developed a range of strategies to cope with various biotic and abiotic stress factors. It is of great interest to understand the adaptive responses of diatoms to different stresses in the marine environment. Proteomic technologies have been applied to the adaptive responses of marine diatoms under different growth conditions in recent years such as nitrogen starvation, iron limitation and phosphorus deficiency. These studies have provided clues to elucidate the sophisticated sensing mechanisms that control their adaptive responses. Although only a very limited number of proteomic studies were conducted in diatoms, the obtained data have led to a better understanding of the biochemical processes that contribute to their ecological success. This review presents the current status of proteomic studies of diatom stress responses and discusses the novel developments and applications for the analysis of protein post-translational modification in diatoms. The potential future application of proteomics could contribute to a better understanding of the physiological mechanisms underlying diatom acclimation to a given stress and the acquisition of an enhanced diatom stress tolerance. Future challenges and research opportunities in the proteomics studies of diatoms are also discussed. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  4. Biofilm and capsule formation of the diatom Achnanthidium minutissimum are affected by a bacterium.

    Science.gov (United States)

    Windler, Miriam; Leinweber, Katrin; Bartulos, Carolina Rio; Philipp, Bodo; Kroth, Peter G

    2015-04-01

    Photoautotrophic biofilms play an important role in various aquatic habitats and are composed of prokaryotic and/or eukaryotic organisms embedded in extracellular polymeric substances (EPS). We have isolated diatoms as well as bacteria from freshwater biofilms to study organismal interactions between representative isolates. We found that bacteria have a strong impact on the biofilm formation of the pennate diatom Achnanthidium minutissimum. This alga produces extracellular capsules of insoluble EPS, mostly carbohydrates (CHO), only in the presence of bacteria (xenic culture). The EPS themselves also have a strong impact on the aggregation and attachment of the algae. In the absence of bacteria (axenic culture), A. minutissimum did not form capsules and the cells grew completely suspended. Fractionation and quantification of CHO revealed that the diatom in axenic culture produces large amounts of soluble CHO, whereas in the xenic culture mainly insoluble CHO were detected. For investigation of biofilm formation by A. minutissimum, a bioassay was established using a diatom satellite Bacteroidetes bacterium that had been shown to induce capsule formation of A. minutissimum. Interestingly, capsule and biofilm induction can be achieved by addition of bacterial spent medium, indicating that soluble hydrophobic molecules produced by the bacterium may mediate the diatom/bacteria interaction. With the designed bioassay, a reliable tool is now available to study the chemical interactions between diatoms and bacteria with consequences for biofilm formation. © 2015 Phycological Society of America.

  5. Selective silicate-directed motility in diatoms

    DEFF Research Database (Denmark)

    Bondoc, Karen Grace V.; Heuschele, Jan; Gillard, Jeroen

    2016-01-01

    Diatoms are highly abundant unicellular algae that often dominate pelagic as well as benthic primary production in the oceans and inland waters. Being strictly dependent on silica to build their biomineralized cell walls, marine diatoms precipitate 240 × 10(12) mol Si per year, which makes them...... the major sink in the global Si cycle. Dissolved silicic acid (dSi) availability frequently limits diatom productivity and influences species composition of communities. We show that benthic diatoms selectively perceive and behaviourally react to gradients of dSi. Cell speed increases under d...

  6. Non-relativistic treatment of diatomic molecules interacting with a generalized Kratzer potential in hyperspherical coordinates

    International Nuclear Information System (INIS)

    Durmus, Aysen

    2011-01-01

    We investigate solutions of a non-relativistic wave equation in hyperspherical coordinates for a diatomic molecule system interacting with a generalized Kratzer potential. Rovibrational eigenvalues and corresponding wavefunctions of non-relativistic diatomic molecules have been determined within the framework of the asymptotic iteration method. Certain fundamental conditions for the applications of the asymptotic iteration method, such as a suitable asymptotic form for the wave-function and the termination condition for the iteration process, are discussed. N-dimensional bound state eigenfunction solutions used in studying the dynamical variables of diatomic molecules are obtained in terms of a confluent hypergeometric function and a generalized Laguerre polynomial. This systematic approach is tested by calculating the rovibrational energy spectra of hydrogen and sodium chloride molecules.

  7. Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms.

    Science.gov (United States)

    Gügi, Bruno; Le Costaouec, Tinaïg; Burel, Carole; Lerouge, Patrice; Helbert, William; Bardor, Muriel

    2015-09-18

    Diatoms are marine organisms that represent one of the most important sources of biomass in the ocean, accounting for about 40% of marine primary production, and in the biosphere, contributing up to 20% of global CO₂ fixation. There has been a recent surge in developing the use of diatoms as a source of bioactive compounds in the food and cosmetic industries. In addition, the potential of diatoms such as Phaeodactylum tricornutum as cell factories for the production of biopharmaceuticals is currently under evaluation. These biotechnological applications require a comprehensive understanding of the sugar biosynthesis pathways that operate in diatoms. Here, we review diatom glycan and polysaccharide structures, thus revealing their sugar biosynthesis capabilities.

  8. Structural identification of long-chain polyamines associated with diatom biosilica in a Southern Ocean sediment core

    Science.gov (United States)

    Bridoux, Maxime C.; Ingalls, Anitra E.

    2010-07-01

    Long-chain polyamines (LCPAs) constitute a new family of natural organic compounds that have recently been isolated and characterized from the biosilicified cell walls of diatom cultures. To date, diatom-specific polyamines have not been investigated from the marine environment and their fate in the environment is entirely unknown. Here, we report a series of LCPAs in a diatom frustule-rich sediment core (TNO57-13 PC4), originating from the Atlantic sector of the Southern Ocean and spanning from the Holocene to the Last Glacial Maximum (LGM). Liquid chromatography with electrospray ionization mass spectrometry (LC-ESI-MS) revealed a complex mixture of linear polyamines with at least 28 individual molecular species. Ion trap mass fragmentation studies, combined with high resolution Time of Flight (TOF) mass spectrometry showed that the polyamine pool consisted of a series of N-methylated propylamine compounds attached to a putrescine moiety, with individual LCPAs varying in chain length and degree of methylation. The structural similarity between LCPAs extracted from the diatom-rich sediment core and those extracted from the frustules of cultured diatoms suggests that sedimentary LCPAs are derived from diatom frustules. We hypothesize that these intrinsically labile organic molecular fossils are protected from diagenesis by encapsulation within the frustule. These compounds constitute a new class of biomarkers that could potentially be indicators of diatom species distribution. Isotopic analysis of LCPAs could be used to improve age models for sediment cores that lack calcium carbonate and to improve current interpretations of diatom-based paleoproxies, including diatom-bound nitrogen isotopes.

  9. Automatic segmentation of diatom images for classification

    NARCIS (Netherlands)

    Jalba, Andrei C.; Wilkinson, Michael H.F.; Roerdink, Jos B.T.M.

    A general framework for automatic segmentation of diatom images is presented. This segmentation is a critical first step in contour-based methods for automatic identification of diatoms by computerized image analysis. We review existing results, adapt popular segmentation methods to this difficult

  10. Relationship between diatom communities and environmental ...

    African Journals Online (AJOL)

    Abstract. The relationship between diatom species and measured environmental variables was explored at different sites of Honghe wetland region located in northeastern China. Planktonic and epiphytic diatom assemblages in the wetland were identified from May to October of 2007 and 2008. Their relationships with ...

  11. Molecular fossils of diatoms. Applications in petroleum geochemistry and palaeoenvironmental studies

    Energy Technology Data Exchange (ETDEWEB)

    Rampen, S.W.

    2009-06-11

    different Proboscia species and culture experiments showed increasing chain-lengths and a decreasing degree of unsaturation for 1,14-diols with increasing growth temperature. Lipid analyses from surface sediments from the eastern South Atlantic suggested a significant relationship between long-chain 1,14-diol chain-length and sea surface temperature, but the degree of unsaturation for 1,14-diols seems also determined by other factors. Sediment trap data from the Arabian Sea confirmed that Proboscia lipids can be used as proxies for upwelling conditions and also showed that long-chain 1,15-diols are not limited to upwelling conditions. A sediment core taken from the Somali continental slope showed strong fluctuations of long-chain 1,14- and 1,15-diols with time; 1,14-diols were relatively high during the Holocene when upwelling occurred and much lower during the Late Glacial Maximum and the last Glacial when upwelling was suppressed. Elevated 1,14-diol concentrations during the first half of Marine Isotope Stage 3 and at the end of Marine Isotope Stage 5.1 suggest intensified glacial upwelling during those periods. Analyses of long-chain diols in a sediment core from the North Western Antarctic Peninsula suggest that Proboscia diatom productivity in this area is associated with upwelling of Upper Circumpolar Deep Water at the shelf break. Comparison of the diol record with melt events in Siple Dome ice core indicates that this upwelling is driven by the same climatic processes that are responsible for changes in regional climate.

  12. Diatoms.

    Science.gov (United States)

    Hungerford, James J.

    1988-01-01

    Discusses a unicellular component of hytoplankton that can easily be collected and studied in the classroom. Describes how to construct and use a diatometer. Suggests activities that can be done with diatoas collected outdoors or grown in an aquarium. (CW)

  13. 70 Ma nonmarine diatoms from northern Mexico

    Science.gov (United States)

    Chacón-Baca, Elizabeth; Beraldi-Campesi, H.; Cevallos-Ferriz, S. R. S.; Knoll, A. H.; Golubic, S.

    2002-03-01

    Carbonaceous cherts of the Tarahumara Formation, exposed near Huepac, Sonora, Mexico, contain abundant diatom frustules occurring as benthic filamentous colonies. Stratigraphic and paleontological observations indicate that Tarahumara sediments accumulated in a nonmarine setting; radiometric ages on encompassing volcanic rocks delimit their depositional age to ca. 70 Ma. Tarahumara fossils therefore extend the paleontological record of nonmarine diatoms from middle Eocene to Late Cretaceous. Preserved populations include forms similar to species of the extant genera Amphora and Melosira, as well as filament-forming araphid pennates comparable to species of Fragilaria and Tabellaria. Tarahumara fossils indicate that by 70 Ma, nonmarine diatoms had achieved considerable environmental as well as taxonomic diversity.

  14. Stability of two-electron diatomic molecules

    International Nuclear Information System (INIS)

    Ferron, Alejandro; Serra, Pablo

    2007-01-01

    We present a detailed study of the ground state behaviour of two-electron diatomic molecules. The ground state stability diagram for diatomic molecules in the Born-Oppenheimer approximation is obtained and the behaviour of the ground state near the stability line is studied. Two different cases are analysed: the homonuclear two-centre two-electron molecule with the internuclear distance as a free parameter and the diatomic two-electron molecule (in this case, the internuclear distance is determined by equilibrium conditions). Analytical and numerical results for these systems are presented

  15. Diatomic Hoenl-London factor computer program

    International Nuclear Information System (INIS)

    Hornkohl, James O.; Parigger, Christian G.; Nemes, Laszlo

    2005-01-01

    A new method is presented for computation of diatomic rotational line strengths, or Hoenl-London factors. The traditional approach includes separately calculating line positions and Hoenl-London factors and assigning parity labels. The present approach shows that one merely computes the line strength for all possible term differences and discards those differences for which the strength vanishes. Numerical diagonalization of the upper and lower Hamiltonians is used, which directly obtains the line positions, Hoenl-London factors, total parities, and e/f parities for both heteronuclear and homonuclear diatomic molecules. The fortran computer program discussed is also applicable for calculating n-photon diatomic spectra

  16. Characterization of marine diatom-infecting virus promoters in the model diatom Phaeodactylum tricornutum

    OpenAIRE

    Kadono, Takashi; Miyagawa-Yamaguchi, Arisa; Kira, Nozomu; Tomaru, Yuji; Okami, Takuma; Yoshimatsu, Takamichi; Hou, Liyuan; Ohama, Takeshi; Fukunaga, Kazunari; Okauchi, Masanori; Yamaguchi, Haruo; Ohnishi, Kohei; Falciatore, Angela; Adachi, Masao

    2015-01-01

    International audience; Viruses are considered key players in phytoplankton population control in oceans. However, mechanisms that control viral gene expression in prominent microalgae such as diatoms remain largely unknown. In this study, potential promoter regions isolated from several marine diatom-infecting viruses (DIVs) were linked to the egfp reporter gene and transformed into the Pennales diatom Phaeodactylum tricornutum. We analysed their activity in cells grown under different condi...

  17. Conductivity bound from dirty black holes

    Energy Technology Data Exchange (ETDEWEB)

    Bitaghsir Fadafan, Kazem, E-mail: bitaghsir@shahroodut.ac.ir

    2016-11-10

    We propose a lower bound of the dc electrical conductivity in strongly disordered, strongly interacting quantum field theories using holography. We study linear response of black holes with broken translational symmetry in Einstein–Maxwell-dilaton theories of gravity. Using the generalized Stokes equations at the horizon, we derive the lower bound of the electrical conductivity for the dual two dimensional disordered field theory.

  18. Digitisation of the South African diatom collection

    CSIR Research Space (South Africa)

    Van der Molen, J

    2008-06-01

    Full Text Available This presentation gives the background of the Diatom collection as well as an overview of the collection content. The two phases of the digitisation process are described in detail...

  19. The evolution of silicon transporters in diatoms.

    Science.gov (United States)

    Durkin, Colleen A; Koester, Julie A; Bender, Sara J; Armbrust, E Virginia

    2016-10-01

    Diatoms are highly productive single-celled algae that form an intricately patterned silica cell wall after every cell division. They take up and utilize silicic acid from seawater via silicon transporter (SIT) proteins. This study examined the evolution of the SIT gene family to identify potential genetic adaptations that enable diatoms to thrive in the modern ocean. By searching for sequence homologs in available databases, the diversity of organisms found to encode SITs increased substantially and included all major diatom lineages and other algal protists. A bacterial-encoded gene with homology to SIT sequences was also identified, suggesting that a lateral gene transfer event occurred between bacterial and protist lineages. In diatoms, the SIT genes diverged and diversified to produce five distinct clades. The most basal SIT clades were widely distributed across diatom lineages, while the more derived clades were lineage-specific, which together produced a distinct repertoire of SIT types among major diatom lineages. Differences in the predicted protein functional domains encoded among SIT clades suggest that the divergence of clades resulted in functional diversification among SITs. Both laboratory cultures and natural communities changed transcription of each SIT clade in response to experimental or environmental growth conditions, with distinct transcriptional patterns observed among clades. Together, these data suggest that the diversification of SITs within diatoms led to specialized adaptations among diatoms lineages, and perhaps their dominant ability to take up silicic acid from seawater in diverse environmental conditions. © 2016 The Authors. Journal of Phycology published by Wiley Periodicals, Inc. on behalf of Phycological Society of America.

  20. Studies on the planktonic diatoms in the vicinity of Kori Nuclear Power Plant

    Energy Technology Data Exchange (ETDEWEB)

    Yoo, K.I. (Hanyang Univ., Seoul (Republic of Korea)); Lee, J.H. (Korea Ocean Research and Development Inst., Seoul (Republic of Korea))

    1982-12-01

    To understand the changes of the species composition and the seasonal fluctuations of planktonic diatoms due to operation of Kori Nuclear Power Plant, a series of studies were carried out from June 1977 to December 1980. One hundred ten taxa of planktonic diatoms, representing 39 genera, 104 species, 4 varieties and 2 formas, were tentatively identified during the study. By the ecological habitat division, the neritic species comprised 61.82% of the total population, while the oceanic forms were 29.09%. The latter value was higher than that of any other southern coastal area, indicating a comparatively strong influence of open water current to the study area. Planktonic diatoms standing crop varied with a certain degree by months and years ranging from 10/sup 2/ cell/l to 10/sup 6/ cell/l. A diatom Skeletonema costatum was the most outstanding species throughout the study periods. In spring, Nitzschia pungens, Leptocylindrus danicus, Paralia sulcata were the dominant species, while Chaetoceros spp. were through summer to autumn. The well known indicator species of Kuroshio waters Planktoniella sol and Chaetoceros messanensis were abundant only in winter. There appeared to be no relationship between ..delta.. T due to the operation of Nuclear Power Plant and phytoplankton standing crop throughout the study periods. Therefore, it seems that thermal discharge of Kori Nuclear Power Plant does not adversely affect on the diatom populations.

  1. Studies on the planktonic diatoms in the vicinity of kori nuclear power plant

    International Nuclear Information System (INIS)

    Yoo, K.I.; Lee, J.H.

    1982-01-01

    To understand the changes of the species composition and the seasonal fluctuations of planktonic diatoms due to operation of Kori Nuclear Power Plant, a series of studies were carried out from June 1977 to December 1980. One hundred ten taxa of planktonic diatoms, representing 39genera, 104 species, 4 varieties and 2 formas, were tentatively identified during the study. By the ecological habitat division, the neritic species comprised 61.82% of the total population, while the oceanic forms were 29.09%. The latter value was higher than that of any other southern coastal area, indicating a comparatively strong influence of open water current to the study area. Planktonic diatoms standing crop varied with a certain degree by months and years ranging from 10 2 cell/l to 10 6 cell/l. A diatom Skeletonema costatum was the most outstanding species throughout the study periods. In spring, Nitzschia pungens, Leptocylindrus danicus, Paralia sulcata were the dominant species, while Chaetoceros spp. were through summer to autumn. The well known indicator species of Kuroshio waters Planktoniella sol and Chaetoceros messanensis were abundant only in winter. There appeared to be no relationship between Δ T due to the poeration of Nuclear Power Plant and phytoplankton standing crop throughout the study periods. Therefore, it seems that thermal discharge of Kori Nuclear Power Plant does not adversely affect on the diatom populations. (Author)

  2. Outdoor Cultivation of Marine Diatoms for Year-Round Production of Biofuels.

    Science.gov (United States)

    Matsumoto, Mitsufumi; Nojima, Daisuke; Nonoyama, Tomomi; Ikeda, Kiichi; Maeda, Yoshiaki; Yoshino, Tomoko; Tanaka, Tsuyoshi

    2017-03-25

    Biofuel production using microalgae is believed to have the advantage of continuous year-round production over crop plants, which have strong seasonality. However, actual year-round production of microalgal lipids using outdoor mass cultivation has rarely been demonstrated. In our previous study, it was demonstrated that the oleaginous diatom, Fistulifera solaris , was culturable in outdoor bioreactors from spring to autumn, whereas biomass and lipid production in winter failed because F. solaris did not grow below 15 °C. Therefore, another candidate strain that is culturable in winter is required. In this study, a cold-tolerant diatom, Mayamaea sp. JPCC CTDA0820, was selected as a promising candidate for biofuel production in winter. Laboratory-scale characterization revealed that this diatom was culturable at temperatures as low as 10 °C. Subsequently, F. solaris (April-October) and Mayamaea sp. JPCC CTDA0820 (November-March) were cultured in outdoor open-pond bioreactors, wherein year-round production of diatom lipids was successfully demonstrated. The maximal values of areal productivities of biomass and lipids reached to 9.79 and 1.80 g/(m² day) for F. solaris , and 8.62 and 0.92 g/(m² day) for Mayamaea sp. JPCC CTDA0820, respectively. With the combined use of these two diatom species, stable year-round production of microalgal lipids became possible.

  3. Unitarity bound for gluon shadowing

    International Nuclear Information System (INIS)

    Kopeliovich, B. Z.; Levin, E.; Potashnikova, I. K.; Schmidt, Ivan

    2009-01-01

    Although at small Bjorken x gluons originated from different nucleons in a nucleus overlap in the longitudinal direction, most of them are still well separated in the transverse plane and therefore cannot fuse. For this reason the gluon density in nuclei cannot drop at small x below a certain bottom bound, which we evaluated in a model independent manner assuming the maximal strength of gluon fusion. We also calculated gluon shadowing in the saturated regime using the Balitsky-Kovchegov equation and found the nuclear ratio to be well above the unitarity bound. The recently updated analysis of parton distributions in nuclei, including BNL Relativistic Heavy Ion Collider (RHIC) data on high-p T hadron production at forward rapidities, led to strong gluon shadowing. Such strong shadowing and therefore the interpretation of the nuclear modification of the p T spectra in dA collisions at RHIC seem to be inconsistent with this unitarity bound.

  4. Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms

    Directory of Open Access Journals (Sweden)

    Bruno Gügi

    2015-09-01

    Full Text Available Diatoms are marine organisms that represent one of the most important sources of biomass in the ocean, accounting for about 40% of marine primary production, and in the biosphere, contributing up to 20% of global CO2 fixation. There has been a recent surge in developing the use of diatoms as a source of bioactive compounds in the food and cosmetic industries. In addition, the potential of diatoms such as Phaeodactylum tricornutum as cell factories for the production of biopharmaceuticals is currently under evaluation. These biotechnological applications require a comprehensive understanding of the sugar biosynthesis pathways that operate in diatoms. Here, we review diatom glycan and polysaccharide structures, thus revealing their sugar biosynthesis capabilities.

  5. Tinted windows: The presence of the UV absorbing compounds called mycosporine-like amino acids embedded in the frustules of marine diatoms

    Science.gov (United States)

    Ingalls, Anitra E.; Whitehead, Kenia; Bridoux, Maxime C.

    2010-01-01

    Diatom frustule-bound organic compounds presumably play an important role in biomineralization and constitute an important pool of organic matter preserved in diatom frustule-rich sediments. In this study, detailed analysis of diatom frustule-bound organic matter in opal-rich Southern Ocean plankton and sediments revealed for the first time the presence of low molecular weight, UV light absorbing compounds called mycosporine-like amino acids (MAAs). Chemically cleaned diatom frustule-derived biosilica was dissolved in HF, releasing bound or entrapped organic compounds that were subsequently characterized using liquid chromatography with UV-Vis and electrospray ionization mass spectrometry (LC/PDA/ESI-MS). Palythine ([M+H] + = 245), porphyra-334 ([M+H] + = 347) and shinorine ([M+H] + = 333) were the most abundant MAAs detected in HF digests of plankton and sediment. Traces of asterina ([M+H] + = 289), palythinol ([M+H] + = 303) and palythinic acid ([M+H] + = 329) were also detected. MAAs in cleaned HF digested frustules were up to two orders of magnitude more abundant than methanol extractable MAAs. MAAs are substituted with acid hydrolysable amino acid residues. Our results suggest that MAAs, and not proteins, could be responsible for the high proportion of the amino acids glycine and threonine found in hydrolysates of HF digested diatom-rich environmental samples. Total MAAs accounted for 3-27% of the carbon and 2-18% of total nitrogen in the frustules undergoing various chemical cleaning treatments. This is the first report of MAAs in close association with a mineral phase and we hypothesize that the mineral matrix could stabilize these compounds, thereby enhancing photoprotection against the harmful effects of UV light. The presence of frustule-bound MAAs in sediment cores further suggests the possibility that they could be used in compound-specific isotope analysis of diatom-bound organic matter and as indicators of past solar irradiance.

  6. Contribution to the determination of the place of death by drowning - A study of diatoms' biodiversity in Douro river estuary.

    Science.gov (United States)

    Coelho, Sara; Ramos, Patrícia; Ribeiro, Cláudia; Marques, Joana; Santos, Agostinho

    2016-07-01

    The role of the investigation of diatoms' presence in organs and body fluids of an individual found dead in a liquid medium and the relevant contribution to the forensic diagnosis of drowning remain controversial. Furthermore, the absence of an exact and well-defined method for diatoms' analysis makes its study a challenging task. Considering this medico-legal problem and the absence of forensic studies on this subject in Portugal, this work aimed to determine the drowning place of dead individuals based on the analysis of diatom species found in different tissues (lung, liver, kidney, bone marrow) and stomach content. Diatom species found in biological samples were compared with those present in the liquid medium where the corpses were found. A total of 37 cases of death by drowning in Oporto metropolitan area were studied. A seasonal database of the diatom species found in Douro river estuary was built based on water samples collected at nine selected places. Diatoms' extractions were performed by a chemical method using 37% (w/w) hydrochloridric acid for the biological samples and 96% (w/w) sulfuric acid for water samples. Diatoms were found in 63% of total cases but only in lung and gastric content samples. The absence of diatoms in other organs is probably related with a quick death, which may have stopped blood circulation almost immediately, preventing diatom contamination of the other organs. A strong relationship between the diatom species found in the biological samples and those found in water samples of the respective drowning place was observed. Due to the high anthropogenic influence on the Douro estuary no significant differences were observed between the five sampling places, making it extremely difficult to determine the exact estuary location of the drowning. The importance of the creation of a diatom database of the potential drowning places (e.g., rivers, seas, lakes) becomes clear in this study. It also shows that, in cases of drowning, the

  7. Perceptron Mistake Bounds

    OpenAIRE

    Mohri, Mehryar; Rostamizadeh, Afshin

    2013-01-01

    We present a brief survey of existing mistake bounds and introduce novel bounds for the Perceptron or the kernel Perceptron algorithm. Our novel bounds generalize beyond standard margin-loss type bounds, allow for any convex and Lipschitz loss function, and admit a very simple proof.

  8. Volcanically far-flung lake sediments in New Zealand and their diatom contents.

    Science.gov (United States)

    Harper, Margaret; Pledger, Shirley; Smith, Euan; Van Eaton, Alexa; Wilson, Colin

    2015-04-01

    Explosive volcanic eruptions from the Taupo Volcanic Zone in New Zealand such as the Okaia (28.6 ka) and Oruanui (25.4 ka) through paleolake Huka and the Taupo eruption (1.8 ka) through paleolake Taupo dispersed measurable quantities of diatom valves (remains of siliceous microscopic algae) along with the tephra (Van Eaton et al. 2013). Diatoms preserved in tephra can inform us about the past histories of freshwater floras and lakes. For instance the possibly extinct endemic diatom Cyclostephanos novaezealandiae is 20 times commoner in the Late Pleistocene Oruanui and Okaia tephras than in recent lake sediment. We also found Aulacoseira valves (mainly A. ambigua) were generally shorter in the older tephras, possibly due to more turbid conditions in the glacial period due to stronger winds or less availability of nutrients. Some information on eruptive processes can also be derived from diatoms. Nearly all diatom assemblages in the Oruanui samples were remarkably similar, indicating they were well mixed by turbulence in the eruptive column. The exceptions were a proximal sample (11 km from vent) and the clasts of slightly older lake sediment enclosed in the ignimbrite. One clast was dominated by different Aulacoseira taxa (A. granulata and A. granulata var. angustissima). A vent in a shallower area of paleolake Huka could well have been the source of these diatoms. The proximal sample was deposited early in the eruption and on a ridge close to the rim of the paleolake, and is also likely to have come from a local vent. Caution should be used in interpreting diatoms in phreatomagmatic tephra in lake basins. Earlier Harper & Collen (2002) interpreted diatoms associated with the Okaia and Oruanui tephras in the Poukawa basin (125 km from vent) as indicating the existence of lakes formed when drainage was blocked by the tephra. However the strong resemblance of the assemblages and morphometry of Aulacoseira valves to those measured in our new samples shows they arrived

  9. Extremophile Diatoms: Implications to the Drake Equation

    Science.gov (United States)

    Sterrenburg, Frithjof A. S.; Hoover, Richard B.

    2011-01-01

    Diatoms are unicellular Eukaryotes that (as a group and phylogenetically) are not strictly regarded as extremophiles , since the vast majority of diatoms are mesophilic photoautotrophs. However, among the terrestrial Eukaryotes, diatoms are by far the single group of organisms with the ability to inhabit the greatest range of hostile environments on Earth. They are the dominant eukaryotes in the polar regions; in fumaroles, hot springs and geysers; and in hypersaline and hyperalkaline lakes and pools. Cryophilic species such as Fragilaria sublinearis and Chaetoceras fragilis are able to carry out respiration at extremely low rates at low temperatures in darkness. The Drake Equation refers to the likelihood of there being intelligent life at the technological level of electromagnetic communication. However, consideration of the range of conditions suitable for the habitability of eukaryotic diatoms and prokaryotic extremophiles, the likelihood that life exists elsewhere in the cosmos becomes many orders of magnitude greater than that predicted by the classical Drake Equation. In this paper we review the characteristics of diatoms as eukaryotic extremophiles and consider the implications to adjustments needed to the Drake Equation to assess the possibility that life exists elsewhere in the Universe.

  10. Fabrication of insulator nanocapillaries from diatoms

    International Nuclear Information System (INIS)

    Bereczky, R.J.; Tokesi, K.

    2006-01-01

    Complete text of publication follows. Diatoms are unicellular microscopic organisms with silicon-dioxide based skeleton enveloped with an organic material, which composes essentially polysaccharides and proteins (see Fig. 1a.). As it was shown, the valva of the diatoms build up almost from clean silicondioxide [1]. Therefore, removing the organic compounds from the diatom, we can have in our hand an ideal, about 100 μ m-sized, and almost cylindrical shaped insulating nanostructure. There are various techniques available to disembarrass the diatom from its organic compounds. We used the so called hydrogen peroxide method. The advantageous properties of this method are the followings: a) this is one of the fastest procedures among the possible methods, b) do not require special equipment, c) cheap, and last but not least it is less harmful for health compared to other methods. This procedure can be an alternative way of the fabrication of insulator nanocapillaries. In this case the preparation of the nanocapillaries is simple and quick. Moreover, we do not need to invest expensive special techniques, (like micromachining-, electrochemical etching technique, moulding process etc) as it was necessary for the case of previously developed method producing insulator nanocapillaries [2,3]. Fig. 1b and Fig. 1c. show the scanning electron micrograph of the skeleton of the diatoms. The size of the cylindrical holes are roughly 200 nm (see Fig. 1c). (author)

  11. Interactions of bacteria with diatoms: Influence on natural marine biofilms.

    Digital Repository Service at National Institute of Oceanography (India)

    Khandeparker, L.; DeCosta, P.M.; Anil, A.C.; Sawant, S.S.

    diatom communities, whereas streptomycin did not. These antibiotic-mediated changes in the fouling diatom community were consistent across the seasons. However, the rates at which the fouling communities changed depended on the initial species composition...

  12. Characterization of marine diatom-infecting virus promoters in the model diatom Phaeodactylum tricornutum.

    Science.gov (United States)

    Kadono, Takashi; Miyagawa-Yamaguchi, Arisa; Kira, Nozomu; Tomaru, Yuji; Okami, Takuma; Yoshimatsu, Takamichi; Hou, Liyuan; Ohama, Takeshi; Fukunaga, Kazunari; Okauchi, Masanori; Yamaguchi, Haruo; Ohnishi, Kohei; Falciatore, Angela; Adachi, Masao

    2015-12-22

    Viruses are considered key players in phytoplankton population control in oceans. However, mechanisms that control viral gene expression in prominent microalgae such as diatoms remain largely unknown. In this study, potential promoter regions isolated from several marine diatom-infecting viruses (DIVs) were linked to the egfp reporter gene and transformed into the Pennales diatom Phaeodactylum tricornutum. We analysed their activity in cells grown under different conditions. Compared to diatom endogenous promoters, novel DIV promoter (ClP1) mediated a significantly higher degree of reporter transcription and translation. Stable expression levels were observed in transformants grown under both light and dark conditions, and high levels of expression were reported in cells in the stationary phase compared to the exponential phase of growth. Conserved motifs in the sequence of DIV promoters were also found. These results allow the identification of novel regulatory regions that drive DIV gene expression and further examinations of the mechanisms that control virus-mediated bloom control in diatoms. Moreover, the identified ClP1 promoter can serve as a novel tool for metabolic engineering of diatoms. This is the first report describing a promoter of DIVs that may be of use in basic and applied diatom research.

  13. Circuit lower bounds in bounded arithmetics

    Czech Academy of Sciences Publication Activity Database

    Pich, Ján

    2015-01-01

    Roč. 166, č. 1 (2015), s. 29-45 ISSN 0168-0072 R&D Projects: GA AV ČR IAA100190902 Keywords : bounded arithmetic * circuit lower bounds Subject RIV: BA - General Mathematics Impact factor: 0.582, year: 2015 http://www.sciencedirect.com/science/article/pii/S0168007214000888

  14. Diatoms: a fossil fuel of the future.

    Science.gov (United States)

    Levitan, Orly; Dinamarca, Jorge; Hochman, Gal; Falkowski, Paul G

    2014-03-01

    Long-term global climate change, caused by burning petroleum and other fossil fuels, has motivated an urgent need to develop renewable, carbon-neutral, economically viable alternatives to displace petroleum using existing infrastructure. Algal feedstocks are promising candidate replacements as a 'drop-in' fuel. Here, we focus on a specific algal taxon, diatoms, to become the fossil fuel of the future. We summarize past attempts to obtain suitable diatom strains, propose future directions for their genetic manipulation, and offer biotechnological pathways to improve yield. We calculate that the yields obtained by using diatoms as a production platform are theoretically sufficient to satisfy the total oil consumption of the US, using between 3 and 5% of its land area. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. The iodine molecule insights into intra- and intermolecular perturbation in diatomic molecules

    CERN Document Server

    Lukashov, Sergey; Pravilov, Anatoly

    2018-01-01

    This book presents experimental and theoretical spectroscopic studies performed over the last 25 years on the iodine molecule’s excited states and their perturbations. It is going to be of interest to researchers who study intra- and intermolecular perturbations in diatomic molecules and more complex systems. The book offers a detailed treatment of the nonadiabatic perturbations of valence, ion pair and Rydberg states induced by intramolecular as well as intermolecular interactions in collisions or in weakly-bound complexes. It also provides an overview of current instrumentation and techniques as well as theoretical approaches describing intra- and intermolecular perturbations. The authors are experts in the use of spectroscopy for the study of intrinsic and collision-induced perturbations in diatomic iodine. They introduced new methods of two- and three-step optical population of the iodine ion-pair states. The iodine molecule has 23 valence states correlating with three dissociation limits, 20 so-called ...

  16. Marine Microscale Interactions: Exploring the Ecological Relationships Between a Cosmopolitan Eukaryotic Diatom Thalassiosira rotula and its Associated Heterotrophic Bacterial Assemblage

    Science.gov (United States)

    Ahern, O. M.; Williams, T.; Whittaker, K. A.; Hunt, D.; Rynearson, T. A.

    2016-02-01

    Interspecies microscale interactions between eukaryotic marine diatoms and heterotrophic bacteria play a role in global oceanic biogeochemical cycling by influencing nutrient and carbon cycling, rates of primary production, and phytoplankton community structure. Studies have shown that marine diatoms carry a specific bacterial assemblage in their phycosphere, but little research has been done to identify these bacterial species and to characterize their ecological relationships despite their strong potential to regulate diatom growth and production. In order to further explore ecological interactions between bacteria and diatoms, we are characterizing the taxonomic composition of phycosphere communities from isolates of the cosmopolitan marine diatom Thalassiosira rotula collected from around the globe and identifying whether environmental factors, different host T. rotula strains, space or season correlate with different phycosphere communities. For our initial analyses, we amplified and sequenced the 16S rDNA v34 region of the phycosphere assemblage of 53 T. rotula isolates from eight locations around the globe and obtained > 420,000 paired-end sequences. We identified > 250 different bacterial operational taxonomic units (OTUs). Although many OTUs were shared across populations which identified to members of Alphaproteobacteria and Gammaproteobacteria, we identified distinct bacterial assemblages associated with different locations. The presence of distinct phycosphere bacterial communities may regulate diatom growth which potentially affects rates of primary production, nutrient bioavailablity, and, ultimately, energy transfer to higher trophic levels.

  17. Diatomic molecules in ultracold Fermi gases - Novel composite bosons

    OpenAIRE

    Petrov, D. S.; Salomon, C.; Shlyapnikov, G. V.

    2005-01-01

    We give a brief overview of recent studies of weakly bound homonuclear molecules in ultracold two-component Fermi gases. It is emphasized that they represent novel composite bosons, which exhibit features of Fermi statistics at short intermolecular distances. In particular, Pauli exclusion principle for identical fermionic atoms provides a strong suppression of collisional relaxation of such molecules into deep bound states. We then analyze heteronuclear molecules which are expected to be for...

  18. Applicability and efficacy of diatom indices in water quality evaluation of the Chambal River in Central India.

    Science.gov (United States)

    Srivastava, Prateek; Grover, Sarika; Verma, Jyoti; Khan, Ambrina Sardar

    2017-11-01

    Diatom indices have gained considerable popularity in estimation of the trophic state and degree of pollution in lotic ecosystems. However, their applicability and efficacy have rarely been tested in Indian streams and rivers. In the present study, benthic diatom assemblages were sampled at 27 sites along the Chambal River in Central India. PCA revealed three groups of sites, namely, heavily polluted (HVPL), moderately polluted (MDPL), and least polluted (SANT). A total of 100 diatom taxa belonging to 40 genera were identified. Brachysira vitrea (Grunow) was the most abundant species recorded from the least polluted sites with an average relative abundance of 29.52. Nitzschia amphibia (Grunow) was representative of heavily polluted sites (average relative abundance 31.71) whereas moderately polluted sites displayed a dominance of Achnanthidium minutissimum (Kϋtzing) with an average relative abundance of 26.33. CCA was used to explore the relationship between diatom assemblage composition and environmental variables. Seventeen different diatom indices were calculated using diatom assemblage data. The relationship between measured water quality variables and index scores was also investigated. Most of the diatom indices exhibited strong correlations with water quality variables including BOD, COD, conductivity, and nutrients, particularly phosphate. Best results were obtained for TDI and IPS indices which showed a high level of resolution with respect to discrimination of sites on the basis of pollution gradients. Water quality maps for the Chambal River were hence prepared in accordance with these two indices. However, satisfactory results with respect to water quality evaluation were also obtained by the application of EPI-D and IGD indices. The present study suggests that TDI and IPS are applicable for biomonitoring of rivers of Central India. Diatom indices, which are simpler to use such as IGD, may be considered, at least for a coarser evaluation of water

  19. Molecular evidence of the toxic effects of diatom diets on gene expression patterns in copepods.

    Directory of Open Access Journals (Sweden)

    Chiara Lauritano

    Full Text Available Diatoms are dominant photosynthetic organisms in the world's oceans and are considered essential in the transfer of energy through marine food chains. However, these unicellular plants at times produce secondary metabolites such as polyunsaturated aldehydes and other products deriving from the oxidation of fatty acids that are collectively termed oxylipins. These cytotoxic compounds are responsible for growth inhibition and teratogenic activity, potentially sabotaging future generations of grazers by inducing poor recruitment in marine organisms such as crustacean copepods.Here we show that two days of feeding on a strong oxylipin-producing diatom (Skeletonema marinoi is sufficient to inhibit a series of genes involved in aldehyde detoxification, apoptosis, cytoskeleton structure and stress response in the copepod Calanus helgolandicus. Of the 18 transcripts analyzed by RT-qPCR at least 50% were strongly down-regulated (aldehyde dehydrogenase 9, 8 and 6, cellular apoptosis susceptibility and inhibitor of apoptosis IAP proteins, heat shock protein 40, alpha- and beta-tubulins compared to animals fed on a weak oxylipin-producing diet (Chaetoceros socialis which showed no changes in gene expression profiles.Our results provide molecular evidence of the toxic effects of strong oxylipin-producing diatoms on grazers, showing that primary defense systems that should be activated to protect copepods against toxic algae can be inhibited. On the other hand other classical detoxification genes (glutathione S-transferase, superoxide dismutase, catalase, cytochrome P450 were not affected possibly due to short exposure times. Given the importance of diatom blooms in nutrient-rich aquatic environments these results offer a plausible explanation for the inefficient use of a potentially valuable food resource, the spring diatom bloom, by some copepod species.

  20. Molecular evidence of the toxic effects of diatom diets on gene expression patterns in copepods.

    Science.gov (United States)

    Lauritano, Chiara; Borra, Marco; Carotenuto, Ylenia; Biffali, Elio; Miralto, Antonio; Procaccini, Gabriele; Ianora, Adrianna

    2011-01-01

    Diatoms are dominant photosynthetic organisms in the world's oceans and are considered essential in the transfer of energy through marine food chains. However, these unicellular plants at times produce secondary metabolites such as polyunsaturated aldehydes and other products deriving from the oxidation of fatty acids that are collectively termed oxylipins. These cytotoxic compounds are responsible for growth inhibition and teratogenic activity, potentially sabotaging future generations of grazers by inducing poor recruitment in marine organisms such as crustacean copepods. Here we show that two days of feeding on a strong oxylipin-producing diatom (Skeletonema marinoi) is sufficient to inhibit a series of genes involved in aldehyde detoxification, apoptosis, cytoskeleton structure and stress response in the copepod Calanus helgolandicus. Of the 18 transcripts analyzed by RT-qPCR at least 50% were strongly down-regulated (aldehyde dehydrogenase 9, 8 and 6, cellular apoptosis susceptibility and inhibitor of apoptosis IAP proteins, heat shock protein 40, alpha- and beta-tubulins) compared to animals fed on a weak oxylipin-producing diet (Chaetoceros socialis) which showed no changes in gene expression profiles. Our results provide molecular evidence of the toxic effects of strong oxylipin-producing diatoms on grazers, showing that primary defense systems that should be activated to protect copepods against toxic algae can be inhibited. On the other hand other classical detoxification genes (glutathione S-transferase, superoxide dismutase, catalase, cytochrome P450) were not affected possibly due to short exposure times. Given the importance of diatom blooms in nutrient-rich aquatic environments these results offer a plausible explanation for the inefficient use of a potentially valuable food resource, the spring diatom bloom, by some copepod species.

  1. Oxylipin diversity in the diatom family Leptocylindraceae reveals DHA derivatives in marine diatoms.

    Science.gov (United States)

    Nanjappa, Deepak; d'Ippolito, Giuliana; Gallo, Carmela; Zingone, Adriana; Fontana, Angelo

    2014-01-17

    Marine planktonic organisms, such as diatoms, are prospective sources of novel bioactive metabolites. Oxygenated derivatives of fatty acids, generally referred to as oxylipins, in diatoms comprise a highly diverse and complex family of secondary metabolites. These molecules have recently been implicated in several biological processes including intra- and inter-cellular signaling as well as in defense against biotic stressors and grazers. Here, we analyze the production and diversity of C20 and C22 non-volatile oxylipins in five species of the family Leptocylindraceae, which constitute a basal clade in the diatom phylogeny. We report the presence of species-specific lipoxygenase activity and oxylipin patterns, providing the first demonstration of enzymatic production of docosahexaenoic acid derivatives in marine diatoms. The differences observed in lipoxygenase pathways among the species investigated broadly reflected the relationships observed with phylogenetic markers, thus providing functional support to the taxonomic diversity of the individual species.

  2. Oxylipin Diversity in the Diatom Family Leptocylindraceae Reveals DHA Derivatives in Marine Diatoms

    Directory of Open Access Journals (Sweden)

    Deepak Nanjappa

    2014-01-01

    Full Text Available Marine planktonic organisms, such as diatoms, are prospective sources of novel bioactive metabolites. Oxygenated derivatives of fatty acids, generally referred to as oxylipins, in diatoms comprise a highly diverse and complex family of secondary metabolites. These molecules have recently been implicated in several biological processes including intra- and inter-cellular signaling as well as in defense against biotic stressors and grazers. Here, we analyze the production and diversity of C20 and C22 non-volatile oxylipins in five species of the family Leptocylindraceae, which constitute a basal clade in the diatom phylogeny. We report the presence of species-specific lipoxygenase activity and oxylipin patterns, providing the first demonstration of enzymatic production of docosahexaenoic acid derivatives in marine diatoms. The differences observed in lipoxygenase pathways among the species investigated broadly reflected the relationships observed with phylogenetic markers, thus providing functional support to the taxonomic diversity of the individual species.

  3. Epibiotic Diatoms Are Universally Present on All Sea Turtle Species.

    Science.gov (United States)

    Robinson, Nathan J; Majewska, Roksana; Lazo-Wasem, Eric A; Nel, Ronel; Paladino, Frank V; Rojas, Lourdes; Zardus, John D; Pinou, Theodora

    2016-01-01

    The macro-epibiotic communities of sea turtles have been subject to growing interest in recent years, yet their micro-epibiotic counterparts are almost entirely unknown. Here, we provide the first evidence that diatoms are epibionts for all seven extant species of sea turtle. Using Scanning Electron Microscopy, we inspected superficial carapace or skin samples from a single representative of each turtle species. We distinguished 18 diatom taxa from these seven individuals, with each sea turtle species hosting at least two diatom taxa. We recommend that future research is undertaken to confirm whether diatom communities vary between sea turtle species and whether these diatom taxa are facultative or obligate commensals.

  4. Genetic and metabolic engineering in diatoms.

    Science.gov (United States)

    Huang, Weichao; Daboussi, Fayza

    2017-09-05

    Diatoms have attracted considerable attention due to their success in diverse environmental conditions, which probably is a consequence of their complex origins. Studies of their metabolism will provide insight into their adaptation capacity and are a prerequisite for metabolic engineering. Several years of investigation have led to the development of the genome engineering tools required for such studies, and a profusion of appropriate tools is now available for exploring and exploiting the metabolism of these organisms. Diatoms are highly prized in industrial biotechnology, due to both their richness in natural lipids and carotenoids and their ability to produce recombinant proteins, of considerable value in diverse markets. This review provides an overview of recent advances in genetic engineering methods for diatoms, from the development of gene expression cassettes and gene delivery methods, to cutting-edge genome-editing technologies. It also highlights the contributions of these rapid developments to both basic and applied research: they have improved our understanding of key physiological processes; and they have made it possible to modify the natural metabolism to favour the production of specific compounds or to produce new compounds for green chemistry and pharmaceutical applications.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  5. Evaluation of European diatom trophic indices.

    NARCIS (Netherlands)

    Lototskaya, A.A.; Verdonschot, P.F.M.; Coste, M.; Vijver, van de B.

    2011-01-01

    Freshwater diatoms are considered to be reliable indicators of the trophic status of rivers and lakes. In the past 30 years, a number of indicator indices have been developed and used for the assessment of trophic conditions all over Europe. It is however still not clear whether the ecologic

  6. Diatom-Based Material Production Demonstration

    Science.gov (United States)

    2016-03-14

    2! Fig. 2 Diagram showing diatom cell membrane, diatotepum (chitin and other carbohydrates ), silica cell... carbohydrates ), silica cell wall and protein coat layer (M. Hildebrand). Plasma Membrane Carbohydrate "rich...diameter round Corning Gold Seal cover glass. Samples were then mounted on aluminum stubs with double-stick carbon tape and coated with gold

  7. Electron transport through a diatomic molecule

    Energy Technology Data Exchange (ETDEWEB)

    Imran, Muhammad, E-mail: imran1gee@gmail.com

    2014-08-01

    Electron transport through a diatomic molecular tunnel junction shows wave like interference phenomenon. By using Keldysh non-equilibrium Green's function (NEGF) theory, we have explicitly presented current and differential conductance calculation for a diatomic molecular and two isolated atoms (two atoms having zero hybridization between their energy orbitals) tunnel junctions. In case of a diatomic molecular tunnel junction, Green's function propagators entering into current and differential conductance formula interfere constructively for a molecular anti-bonding state and destructively for bonding state. Consequently, conductance through a molecular bonding state is suppressed, and to conserve current, conductance through anti-bonding state is enhanced. Therefore, current steps and differential conductance peaks amplitude show asymmetric correspondence between molecular bonding and anti-bonding states. Interestingly, for a diatomic molecule, comprising of two atoms of same energy level, these propagators interfere completely destructively for molecular bonding state and constructively for molecular anti-bonding state. Hence under such condition, a single step or a single peak is shown up in current versus voltage or differential conductance versus voltage studies.

  8. Electron transport through a diatomic molecule

    International Nuclear Information System (INIS)

    Imran, Muhammad

    2014-01-01

    Electron transport through a diatomic molecular tunnel junction shows wave like interference phenomenon. By using Keldysh non-equilibrium Green's function (NEGF) theory, we have explicitly presented current and differential conductance calculation for a diatomic molecular and two isolated atoms (two atoms having zero hybridization between their energy orbitals) tunnel junctions. In case of a diatomic molecular tunnel junction, Green's function propagators entering into current and differential conductance formula interfere constructively for a molecular anti-bonding state and destructively for bonding state. Consequently, conductance through a molecular bonding state is suppressed, and to conserve current, conductance through anti-bonding state is enhanced. Therefore, current steps and differential conductance peaks amplitude show asymmetric correspondence between molecular bonding and anti-bonding states. Interestingly, for a diatomic molecule, comprising of two atoms of same energy level, these propagators interfere completely destructively for molecular bonding state and constructively for molecular anti-bonding state. Hence under such condition, a single step or a single peak is shown up in current versus voltage or differential conductance versus voltage studies.

  9. Disentangling diatom species complexes: does morphometry suffice?

    Directory of Open Access Journals (Sweden)

    Saúl Blanco

    2017-12-01

    Full Text Available Accurate taxonomic resolution in light microscopy analyses of microalgae is essential to achieve high quality, comparable results in both floristic analyses and biomonitoring studies. A number of closely related diatom taxa have been detected to date co-occurring within benthic diatom assemblages, sharing many morphological, morphometrical and ecological characteristics. In this contribution, we analysed the hypothesis that, where a large sample size (number of individuals is available, common morphometrical parameters (valve length, width and stria density are sufficient to achieve a correct identification to the species level. We focused on some common diatom taxa belonging to the genus Gomphonema. More than 400 valves and frustules were photographed in valve view and measured using Fiji software. Several statistical tools (mixture and discriminant analysis, k-means clustering, classification trees, etc. were explored to test whether mere morphometry, independently of other valve features, leads to correct identifications, when compared to identifications made by experts. In view of the results obtained, morphometry-based determination in diatom taxonomy is discouraged.

  10. Oscillator strength of instantaneous diatomic sodium molecules

    Energy Technology Data Exchange (ETDEWEB)

    Perny, G.

    1991-10-01

    We introduce definitely the notion of instantaneous molecules, real or fictitious, in spite of its utilization in certain fields of the supraconductivity, genetics and advanced medical research. Calculation of the oscillator strength of instantaneous sodium diatomic molecules gives (f{sub mol})sup(Na{sub 2(i)})=6,86. This method is transposable at lithium and other Ia elements. (orig.).

  11. Oscillator strength of instantaneous diatomic sodium molecules

    Science.gov (United States)

    Perny, G.

    1991-12-01

    We introduce definitely the notion of instantaneous molecules, real or fictitious, in spite of its utilization in certain fields of the supraconductivity, genetics and advanced medical research. Calculation of the oscillator strength of instantaneous sodium diatomic molecules gives [ f mol]Na 2( i)=6,86. This method is transposable at lithium and other Ia elements.

  12. Laurentian Great Lakes Phytoplankton and Their Water Quality Characteristics, Including a Diatom-Based Model for Paleoreconstruction of Phosphorus

    Science.gov (United States)

    Reavie, Euan D.; Heathcote, Adam J.; Shaw Chraïbi, Victoria L.

    2014-01-01

    Recent shifts in water quality and food web characteristics driven by anthropogenic impacts on the Laurentian Great Lakes warranted an examination of pelagic primary producers as tracers of environmental change. The distributions of the 263 common phytoplankton taxa were related to water quality variables to determine taxon-specific responses that may be useful in indicator models. A detailed checklist of taxa and their environmental optima are provided. Multivariate analyses indicated a strong relationship between total phosphorus (TP) and patterns in the diatom assemblages across the Great Lakes. Of the 118 common diatom taxa, 90 (76%) had a directional response along the TP gradient. We further evaluated a diatom-based transfer function for TP based on the weighted-average abundance of taxa, assuming unimodal distributions along the TP gradient. The r2 between observed and inferred TP in the training dataset was 0.79. Substantial spatial and environmental autocorrelation within the training set of samples justified the need for further model validation. A randomization procedure indicated that the actual transfer function consistently performed better than functions based on reshuffled environmental data. Further, TP was minimally confounded by other environmental variables, as indicated by the relatively large amount of unique variance in the diatoms explained by TP. We demonstrated the effectiveness of the transfer function by hindcasting TP concentrations using fossil diatom assemblages in a Lake Superior sediment core. Passive, multivariate analysis of the fossil samples against the training set indicated that phosphorus was a strong determinant of historical diatom assemblages, verifying that the transfer function was suited to reconstruct past TP in Lake Superior. Collectively, these results showed that phytoplankton coefficients for water quality can be robust indicators of Great Lakes pelagic condition. The diatom-based transfer function can be used in

  13. Complexity Bounds for Quantum Computation

    Science.gov (United States)

    2007-06-22

    iently thanin lassi al omputation, onstru tion of small ir uits whi h an arry out phase estimation, show-ing that the quantum ontent of strong...on lower bounds for omputing parity or fanout using onstant or log depth quantum ir uits, quantum simulations of lassi al ir uit elements and...lasses, su h as thresh-old and mod fun tions, and the general relationships between quantum omplexity lasses and orre-sponding lassi al lasses

  14. A matrix lower bound

    Energy Technology Data Exchange (ETDEWEB)

    Grcar, Joseph F.

    2002-02-04

    A matrix lower bound is defined that generalizes ideas apparently due to S. Banach and J. von Neumann. The matrix lower bound has a natural interpretation in functional analysis, and it satisfies many of the properties that von Neumann stated for it in a restricted case. Applications for the matrix lower bound are demonstrated in several areas. In linear algebra, the matrix lower bound of a full rank matrix equals the distance to the set of rank-deficient matrices. In numerical analysis, the ratio of the matrix norm to the matrix lower bound is a condition number for all consistent systems of linear equations. In optimization theory, the matrix lower bound suggests an identity for a class of min-max problems. In real analysis, a recursive construction that depends on the matrix lower bound shows that the level sets of continuously differential functions lie asymptotically near those of their tangents.

  15. Wavelength and orientation dependent capture of light by diatom frustule nanostructures.

    Science.gov (United States)

    Romann, Julien; Valmalette, Jean-Christophe; Chauton, Matilde Skogen; Tranell, Gabriella; Einarsrud, Mari-Ann; Vadstein, Olav

    2015-12-02

    The ecological success of diatoms is emphasized by regular blooms of many different species in all aquatic systems, but the reason behind their success is not fully understood. A special feature of the diatom cell is the frustule, a nano-patterned cell encasement made of amorphous biosilica. The optical properties of a cleaned single valve (one half of a frustule) from the diatom Coscinodiscus centralis were studied using confocal micro-spectroscopy. A photonic crystal function in the frustule was observed, and analysis of the hyperspectral mapping revealed an enhancement of transmitted light around 636 and 663 nm. These wavelengths match the absorption maxima of chlorophyll a and c, respectively. Additionally, we demonstrate that a highly efficient light trapping mechanism occurred, resulting from strong asymmetry between the cribrum and foramen pseudo-periodic structures. This effect may prevent transmitted light from being backscattered and in turn enhance the light absorption. Based on our results, we hypothesize that the multi-scaled layered structure of the frustule improves photosynthetic efficiency by these three mechanisms. The optical properties of the frustule described here may contribute to the ecological success of diatoms in both lentic and marine ecosystems, and should be studies further in vivo.

  16. Sorption of 237Pu by the diatom Asterionella formosa

    International Nuclear Information System (INIS)

    Conway, H.L.; Wahlgren, M.A.; Peterson, N.; Nelson, D.M.

    1976-01-01

    Knowledge of the behavior of the man-made radionuclide plutonium within aquatic environments is of fundamental importance in assessing its potential hazards and ecological impact. The sorption of plutonium by phytoplankton and other algae is the dominant factor in the biological transport of plutonium in the aquatic environment, and it has been suggested that sorption by phytoplankton may be responsible for the seasonal loss of plutonium from the epilimnion of Lake Michigan. A unialgal diatom culture was spiked with 237 Pu tracer solution in an attempt to simulate the behavior of fallout plutonium observed in field studies. The results were encouraging in that the 237 Pu in the filtered lake water medium exhibited strongly anionic properties similar to fallout plutonium in Lake Michigan, with limited sorption on container walls. The purpose of the present study was to extend the investigations of the sorption of plutonium by phytoplankton in a controlled environment using continuous culture techniques

  17. Addressed immobilization of biofunctionalized diatoms on electrodes by gold electrodeposition.

    Science.gov (United States)

    Leonardo, S; Garibo, D; Fernández-Tejedor, M; O'Sullivan, C K; Campàs, M

    2017-03-23

    Diatoms are single cell microalgae with a silica shell (frustule), which possess a micro/nanoporous pattern of unparalleled diversity far beyond the possibilities of current micro- and nanofabrication techniques. To explore diatoms as natural three-dimensional nanostructured supports in sensing and biosensing devices, a simple, rapid and stable method to immobilize diatoms via gold electrodeposition is described. In this process, gold microstructures are formed, immobilizing diatoms by entrapment or crossing their nanopores. Varying the applied potential, time and HAuCl 4 concentration, gold deposits of different morphologies and roughness are obtained, thereby determining the diatom immobilization process. Optical and scanning electron microscopy have been used to characterize diatom immobilization yields, the morphology of the gold microstructures, and the morphological integrity of diatoms. Cyclic voltammetry has been performed to characterize the gold deposits and to demonstrate the enhanced electrocatalytic activity of the gold-diatom electrodes. Electro-addressed immobilization of different diatoms on specific bands of interdigitated electrode arrays has been achieved, highlighting the potential application of diatoms for site-specific immobilization on microarrays. The feasibility to combine tailored immobilization with diatom biofunctionalization has also been demonstrated. Antibody-functionalized diatoms were immobilized on electrodes retaining their ability to detect its cognate antigen. The reported method exploits the natural three-dimensional nanostructures of diatoms together with their easy modification with biomolecules and the simplicity of gold electrodeposition to produce micro/nanostructured and highly electrocatalytic electrodes, providing low-cost and eco-friendly platforms and arrays with potential application in biosensing devices.

  18. Bulk Sediment and Diatom Silica Carbon Isotope Composition from Coastal Marine Sediments off East Antarctica

    NARCIS (Netherlands)

    Berg, S.; Leng, M.J.; Kendrick, C.P.; Cremer, H.; Wagner, B.

    2013-01-01

    Organic carbon occluded in diatom silica is assumed to be protected from degradation in the sediment. δ13C from diatom carbon (δ13C(diatom)) therefore potentially provides a signal of conditions during diatom growth. However, there have been few studies based on δ13C(diatom). Numerous variables can

  19. A diatom-based biological condition gradient (BCG) approach for assessing impairment and developing nutrient criteria for streams.

    Science.gov (United States)

    Hausmann, Sonja; Charles, Donald F; Gerritsen, Jeroen; Belton, Thomas J

    2016-08-15

    Over-enrichment leading to excess algal growth is a major problem in rivers and streams. Regulations to protect streams typically incorporate nutrient criteria, concentrations of phosphorus and nitrogen that should not be exceeded in order to protect biological communities. A major challenge has been to develop an approach for both categorizing streams based on their biological conditions and determining scientifically defensible nutrient criteria to protect the biotic integrity of streams in those categories. To address this challenge, we applied the Biological Condition Gradient (BCG) approach to stream diatom assemblages to develop a system for categorizing sites by level of impairment, and then examined the related nutrient concentrations to identify potential nutrient criteria. The six levels of the BCG represent a range of ecological conditions from natural (1) to highly disturbed (6). A group of diatom experts developed a set of rules and a model to assign sites to these levels based on their diatom assemblages. To identify potential numeric nutrient criteria, we explored the relation of assigned BCG levels to nutrient concentrations, other anthropogenic stressors, and possible confounding variables using data for stream sites in New Jersey (n=42) and in surrounding Mid-Atlantic states, USA (n=1443). In both data sets, BCG levels correlated most strongly with total phosphorus and the percentage of forest in the watershed, but were independent of pH. We applied Threshold Indicator Taxa Analysis (TITAN) to determine change-points in the diatom assemblages along the BCG gradient. In both data sets, statistically significant diatom changes occurred between BCG levels 3 and 4. Sites with BCG levels 1 to 3 were dominated by species that grow attached to surfaces, while sites with BCG scores of 4 and above were characterized by motile diatoms. The diatom change-point corresponded with a total phosphorus concentration of about 50μg/L. Copyright © 2016 Elsevier B

  20. Summer Epiphytic Diatoms from Terra Nova Bay and Cape Evans (Ross Sea, Antarctica) - A Synthesis and Final Conclusions

    Science.gov (United States)

    Majewska, Roksana; Convey, Peter; De Stefano, Mario

    2016-01-01

    Despite recent advances in polar marine biology and related fields, many aspects of the ecological interactions that are crucial for the functioning of Antarctic shallow water habitats remain poorly understood. Although epiphytic diatoms play an essential role in the Antarctic marine food web, basic information regarding their ecology, biodiversity and biogeography is largely unavailable. Here, we synthesise studies on Ross Sea epiphytic diatoms collected during 11 summer Antarctic expeditions between the years 1989/90 and 2011/12, presenting a full list of diatom taxa associated with three macroalgal species (Iridaea cordata, Phyllophora antarctica, and Plocamium cartilagineum) and their epiphytic sessile fauna. Diatom communities found during the three summer months at various depths and sampling stations differed significantly in terms of species composition, growth form structure and abundances. Densities ranged from 21 to >8000 cells mm-2, and were significantly higher on the surface of epiphytic micro-fauna than on any of the macroalgal species examined. Generally, host organisms characterized by higher morphological heterogeneity (sessile microfauna, ramified Plocamium) supported richer diatom communities than those with more uniform surfaces (Iridaea). Differences between epiphytic communities associated with different macroalgae were reflected better in species composition than in growth form structure. The latter changed significantly with season, which was related strongly to the changing ice conditions. A general trend towards an increasing number of erect forms in deeper waters and tube-dwelling diatoms in the shallowest sites (2–5 m) was also observed. This study explores further important and largely previously unknown aspects of relationships and interactions between Antarctic epiphytic diatoms and their micro- and macro-environments. PMID:27078637

  1. Summer Epiphytic Diatoms from Terra Nova Bay and Cape Evans (Ross Sea, Antarctica)--A Synthesis and Final Conclusions.

    Science.gov (United States)

    Majewska, Roksana; Convey, Peter; De Stefano, Mario

    2016-01-01

    Despite recent advances in polar marine biology and related fields, many aspects of the ecological interactions that are crucial for the functioning of Antarctic shallow water habitats remain poorly understood. Although epiphytic diatoms play an essential role in the Antarctic marine food web, basic information regarding their ecology, biodiversity and biogeography is largely unavailable. Here, we synthesise studies on Ross Sea epiphytic diatoms collected during 11 summer Antarctic expeditions between the years 1989/90 and 2011/12, presenting a full list of diatom taxa associated with three macroalgal species (Iridaea cordata, Phyllophora antarctica, and Plocamium cartilagineum) and their epiphytic sessile fauna. Diatom communities found during the three summer months at various depths and sampling stations differed significantly in terms of species composition, growth form structure and abundances. Densities ranged from 21 to >8000 cells mm-2, and were significantly higher on the surface of epiphytic micro-fauna than on any of the macroalgal species examined. Generally, host organisms characterized by higher morphological heterogeneity (sessile microfauna, ramified Plocamium) supported richer diatom communities than those with more uniform surfaces (Iridaea). Differences between epiphytic communities associated with different macroalgae were reflected better in species composition than in growth form structure. The latter changed significantly with season, which was related strongly to the changing ice conditions. A general trend towards an increasing number of erect forms in deeper waters and tube-dwelling diatoms in the shallowest sites (2-5 m) was also observed. This study explores further important and largely previously unknown aspects of relationships and interactions between Antarctic epiphytic diatoms and their micro- and macro-environments.

  2. Drivers of Change in a 7300-Year Holocene Diatom Record from the Hemi-Boreal Region of Ontario, Canada.

    Directory of Open Access Journals (Sweden)

    Kristen K Beck

    Full Text Available A Holocene lake sediment record spanning the past 7300 years from Wishart Lake in the Turkey Lakes Watershed in the Hemi-Boreal of central Ontario, Canada, was used to evaluate the potential drivers of long-term change in diatom assemblages at this site. An analysis of diatom assemblages found that benthic and epiphytic taxa dominated the mid-Holocene (7300-4000 cal yr BP, indicating shallow, oligotrophic, circum-neutral conditions, with macrophytes present. A significant shift in diatom assemblages towards more planktonic species (mainly Cyclotella sensu lato, but also several species of Aulacoseira, and Tabellaria flocculosa occurred ~4000 cal yr BP. This change likely reflects an increase in lake level, coincident with the onset of a more strongly positive moisture balance following the drier climates of the middle Holocene, established by numerous regional paleoclimate records. Pollen-inferred regional changes in vegetation around 4000 yrs BP, including an increase in Betula and other mesic taxa, may have also promoted changes in diatom assemblages through watershed processes mediated by the chemistry of runoff. A more recent significant change in limnological conditions is marked by further increases in Cyclotella sensu lato beginning in the late 19th century, synchronous with the Ambrosia pollen rise and increases in sediment bulk density, signaling regional and local land clearance at the time of Euro-Canadian settlement (1880 AD. In contrast to the mid-Holocene increase in planktonic diatoms, the modern increase in Cyclotella sensu lato likely indicates a response to land use and vegetation change, and erosion from the watershed, rather than a further increase in water level. The results from Wishart Lake illustrate the close connection between paleoclimate change, regional vegetation, watershed processes, and diatom assemblages and also provides insight into the controls on abundance of Cyclotella sensu lato, a diatom taxonomic group

  3. Physical Uncertainty Bounds (PUB)

    Energy Technology Data Exchange (ETDEWEB)

    Vaughan, Diane Elizabeth [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Preston, Dean L. [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-03-19

    This paper introduces and motivates the need for a new methodology for determining upper bounds on the uncertainties in simulations of engineered systems due to limited fidelity in the composite continuum-level physics models needed to simulate the systems. We show that traditional uncertainty quantification methods provide, at best, a lower bound on this uncertainty. We propose to obtain bounds on the simulation uncertainties by first determining bounds on the physical quantities or processes relevant to system performance. By bounding these physics processes, as opposed to carrying out statistical analyses of the parameter sets of specific physics models or simply switching out the available physics models, one can obtain upper bounds on the uncertainties in simulated quantities of interest.

  4. Impact of nutrient starvation on the biochemical composition of the marine diatom Thalassiosira weissflogii: from the whole cell to the frustule fraction

    Science.gov (United States)

    Soler, C.; Claquin, P.; Goutx, M.; Ragueneau, O.; Moriceau, B.

    2010-08-01

    Interactions between carbon and silica in the diatom frustule play an important role in carbon export through their impact on diatom remineralization (carbon degradation and biogenic silica dissolution). To ameliorate model prediction of the fate of Si and organic matter during sedimentation, there is a need to first understand the origin and nature of Si-OC interactions, their impact on diatom remineralization and their variability with environmental conditions. In this study we focus on the impact of nutrient starvations on the formation and nature of these interactions in an ubiquitous diatom, Thalassiosira weissflogii. Fluorescence reveals the strong impact of all starvations on diatom metabolism while Fourier transformed infrared (FTIR) spectroscopy clearly showed that starvations altered the composition of the different diatom fractions. The relative compositions of whole cells were almost not impacted by starvations except Si(OH)4 starvation that slightly increased proteins relative contribution while decreasing carbohydrate. Starvation impacts became obvious looking at the composition of the different part of the diatom. The relative biochemical composition of the organic coating, protecting the frustule from the environment, was strongly affected by starvation. Under nitrate starvation, carbohydrate contribution increased while protein contribution decreased. Inversely, phosphate starvation increased the proportion of proteins and decreased carbohydrates contribution. Starvations also modified the different frustule phases. bSiO2 contribution decreased in the less reactive phase under silicate and phosphate starvation whereas nitrate starvation rather increased carbohydrate and protein pools. Phosphate starvation also led to an important shift of dominance among protein groups between amide I and amide II which compounds are suspected to play a key role in the frustule synthesis and architecture. Nutrient starvations affected the relative biochemical

  5. Morse basis expansion applied to diatomic molecules

    Energy Technology Data Exchange (ETDEWEB)

    Lima, Emanuel F. de, E-mail: eflima@rc.unesp.br [Departamento de Estatística, Matemática Aplicada e Computação, Instituto de Geociências e Ciências Exatas, Universidade Estadual Paulista – UNESP, Rio Claro, São Paulo 13506-900 (Brazil)

    2012-02-20

    This work explores the use of the eigenfunctions of the Morse potential with a infinite barrier at long range to solve the radial Schrödinger equation for diatomic molecules. Analytical formulas are obtained for the kinetic energy operator matrix elements in the Morse basis. The Morse basis expansion is applied to find the vibrational–rotational levels of the sodium molecule in the electronic ground state. -- Highlights: ► The Morse potential basis is invoked to find the rovibrational levels of diatomic molecules. ► Analytical formulas for the kinetic energy operator in the Morse basis are obtained. ► The results of the Morse basis expansion show good agreement with the Fourier Grid technique.

  6. Toxicity of pesticides on photosynthesis of diatoms

    International Nuclear Information System (INIS)

    Shoaib, N.; Siddiqui, P.J.A.; Ali, A.; Burrhan, Z.; Shafique, S.

    2011-01-01

    Pakistan being an agricultural country, a large amount of pesticides are used, including organophosphates and synthetic pyrethroids. These pesticides are released through rivers and other tributeries into the coastal environment, thus posing a contiguous threat to marine organisms. In the present study two species of diatoms Amphora and Navicula were selected for the assessment of impact of organ phosphate and pyrethroid toxicity on these primary producers. The study shows that rate of photosynthesis was inhibited in both Amphora and Navicula species exposed to pesticide. The acute toxicity of pesticide was determined by measuring IC50 of the test organisms. IC50 calculated for diatom species depicts that different pesticides had variable effects on the photosynthesis of microalgae. High sensitivity of marine organisms is alarming as it may have implications on the marine ecosystem and fisheries. The results are also useful in setting control limits for the release of these chemicals in nature. (author)

  7. Diatoms of the Mystery Lake, Taiwan (III

    Directory of Open Access Journals (Sweden)

    Jiunn-Tzong Wu

    2009-09-01

    Full Text Available This is the last part of study about the diatom flora found in the Mystery Lake, a slightly acidic lake situated within a hardwood nature preserve in northeastern Taiwan. In this article, we reported 17 species, belonging to 4 genera, 4 families, and 2 orders, based on scanning electron microscopic observations. The species described here, 9 are newly recorded in Taiwan. They are: Navicula cryptotenella, Navicula ingrata, Navicula subfasciata, Pinnularia borealis var. rectangularis, Pinnularia interrupta, Pinnularia maior, Sellaphora laevissima, S. vitabunda, and Nitzschia perminuta. In total, we found 76 diatom species in the surface sediments of this lake. Among them, 33 (43% are newly recorded to Taiwan. The present study indicates that this lake is characterized by high species diversity and high species richness, which are related to the oligotrophic and non-polluted environmental conditions.

  8. Photon virtual bound state

    International Nuclear Information System (INIS)

    Inoue, J.; Ohtaka, K.

    2004-01-01

    We study virtual bound states in photonics, which are a vectorial extension of electron virtual bound states. The condition for these states is derived. It is found that the Mie resonant state which satisfies the condition that the size parameter is less than the angular momentum should be interpreted as a photon virtual bound state. In order to confirm the validity of the concept, we compare the photonic density of states, the width of which represents the lifetime of the photon virtual bound states, with numerical results

  9. Role of Diatoms in marine biofouling

    Digital Repository Service at National Institute of Oceanography (India)

    Anil, A.C.; Patil, J.S..; Mitbavkar, S.; DeCosta, P.M.; DeSilva, S.; Hegde, S.; Naik, R.

    methods are still practiced mainly because expensive equipment is not required. The advantage of brushing and scraping methods over direct methods is that quantification of larger areas of substratum is possible. The main disadvantages of Diatoms... albicostatus Pilsbry and the serpulid polychaete Pomatoleios kraussii Baird. Chemical antifoulants have several disadvantages. For instance, they pose a threat to non-target organisms (Readman et al. 1993). Orga otins have a high leaching rate and one...

  10. Effective bounds on strong unicity in L1-approximation

    DEFF Research Database (Denmark)

    Kohlenbach, Ulrich; Oliva, Paulo B.

    In this paper we present another case study in the general project of Proof Mining which means the logical analysis of prima facie non-effective proofs with the aim of extracting new computationally relevant data. We use techniques based on monotone functional interpretation (developed in [17]) t...

  11. Coulomb plus strong interaction bound states - momentum space numerical solutions

    International Nuclear Information System (INIS)

    Heddle, D.P.; Tabakin, F.

    1985-01-01

    The levels and widths of hadronic atoms are calculated in momentum space using an inverse algorithm for the eigenvalue problem. The Coulomb singularity is handled by the Lande substraction method. Relativistic, nonlocal, complex hadron-nucleus interactions are incorporated as well as vacuum polarization and finite size effects. Coordinate space wavefunctions are obtained by employing a Fourier Bessel transformation. (orig.)

  12. Applications of Diatoms as Potential Microalgae in Nanobiotechnology

    OpenAIRE

    Ahmad Yari Khosroushahi; Miguel de la Guardia; Mohamad Moradi Ghorakhlu; Ali Akbar Jamali; Fariba Akbari

    2012-01-01

    Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the ...

  13. Mapping the diatom redox-sensitive proteome provides insight into response to nitrogen stress in the marine environment.

    Science.gov (United States)

    Rosenwasser, Shilo; Graff van Creveld, Shiri; Schatz, Daniella; Malitsky, Sergey; Tzfadia, Oren; Aharoni, Asaph; Levin, Yishai; Gabashvili, Alexandra; Feldmesser, Ester; Vardi, Assaf

    2014-02-18

    Diatoms are ubiquitous marine photosynthetic eukaryotes responsible for approximately 20% of global photosynthesis. Little is known about the redox-based mechanisms that mediate diatom sensing and acclimation to environmental stress. Here we used a quantitative mass spectrometry-based approach to elucidate the redox-sensitive signaling network (redoxome) mediating the response of diatoms to oxidative stress. We quantified the degree of oxidation of 3,845 cysteines in the Phaeodactylum tricornutum proteome and identified approximately 300 redox-sensitive proteins. Intriguingly, we found redox-sensitive thiols in numerous enzymes composing the nitrogen assimilation pathway and the recently discovered diatom urea cycle. In agreement with this finding, the flux from nitrate into glutamine and glutamate, measured by the incorporation of (15)N, was strongly inhibited under oxidative stress conditions. Furthermore, by targeting the redox-sensitive GFP sensor to various subcellular localizations, we mapped organelle-specific oxidation patterns in response to variations in nitrogen quota and quality. We propose that redox regulation of nitrogen metabolism allows rapid metabolic plasticity to ensure cellular homeostasis, and thus is essential for the ecological success of diatoms in the marine ecosystem.

  14. Seasonal variations in fouling diatom communities on the Yantai coast

    Science.gov (United States)

    Yang, Cuiyun; Wang, Jianhua; Yu, Yang; Liu, Sujing; Xia, Chuanhai

    2015-03-01

    Fouling diatoms are a main component of biofilm, and play an important role in marine biofouling formation. We investigated seasonal variations in fouling diatom communities that developed on glass slides immersed in seawater, on the Yantai coast, northern Yellow Sea, China, using microscopy and molecular techniques. Studies were conducted during 2012 and 2013 over 3, 7, 14, and 21 days in each season. The abundance of attached diatoms and extracellular polymeric substances increased with exposure time of the slides to seawater. The lowest diatom density appeared in winter and the highest species richness and diversity were found in summer and autumn. Seasonal variation was observed in the structure of fouling diatom communities. Pennate diatoms Cylindrotheca, Nitzschia, Navicula, Amphora, Gomphonema, and Licmophora were the main fouling groups. Cylindrotheca sp. dominated in the spring. Under laboratory culture conditions, we found that Cylindrotheca grew very fast, which might account for the highest density of this diatom in spring. The lower densities in summer and autumn might result from the emergence of fouling animals and environmental factors. The Cylindrotheca sp. was identified as Cylindrotheca closterium using18S rDNA sequencing. The colonization process of fouling diatoms and significant seasonal variation in this study depended on environmental and biological factors. Understanding the basis of fouling diatoms is essential and important for developing new antifouling techniques.

  15. Colonization of diatom aggregates by the dinoflagellate Noctiluca scintillans

    DEFF Research Database (Denmark)

    Tiselius, P.; Kiørboe, Thomas

    1998-01-01

    Abundance and vertical distribution of the dinoflagellate Noctiluca scintillans were studied during a diatom bloom in the Benguela current. Video observations showed the occurrence of abundant Chaetoceros spp. aggregates colonized by N. scintillans. The diatom aggregates were formed by regular...... coagulation of diatom cells and not by mucus feeding behavior of N. scintillans. N. scintillans can be positively buoyant, and estimates of encounter rates between N. scintillans and diatom aggregates during ascent demonstrates that this mechanism is sufficient to account for the observed colonization...

  16. Structure and properties of oil bodies in diatoms.

    Science.gov (United States)

    Maeda, Yoshiaki; Nojima, Daisuke; Yoshino, Tomoko; Tanaka, Tsuyoshi

    2017-09-05

    Diatoms accumulate triacylglycerols in spherical organelles called oil bodies when exposed to nutrient deprivation conditions. Oil body biology in diatoms has attracted significant attention due to the complexity of the intracellular organelles and the unique combination of genes generated by the evolutionary history of secondary endosymbiosis. The demand for biofuel production has further increased the interest in and importance of a better understanding of oil body biology in diatoms, because it could provide targets for genetic engineering to further enhance their promising lipid accumulation. This review describes recent progress in studies of the structure and properties of diatom oil bodies. Firstly, the general features of diatom oil bodies are described, in particular, their number, size and morphology, as well as the quantity and quality of lipids they contain. Subsequently, the diatom oil body-associated proteins, which were recently discovered through oil body proteomics, are introduced. Then, the metabolic pathways responsible for the biogenesis and degradation of diatom oil bodies are summarized. During biogenesis and degradation, oil bodies interact with other organelles, including chloroplasts, the endoplasmic reticulum and mitochondria, suggesting their dynamic nature in response to environmental changes. Finally, the functions of oil bodies in diatoms are discussed.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  17. Light acclimation in diatoms: from phenomenology to mechanisms.

    Science.gov (United States)

    Wilhelm, Christian; Jungandreas, Anne; Jakob, Torsten; Goss, Reimund

    2014-08-01

    This review summarizes the current knowledge about light acclimation processes in diatoms. Against the background of the phenomenological description of the process in the 70s-80s, the recent progress in diatom genetics has generated new information about the underlying mechanisms. Although the general responses of diatoms to changes in the light climate are comparable to the green algal lineage, many differences in the underlying mechanisms have been observed in the last ten years, yielding clear evidence that the regulatory network in diatoms has unique traits that might explain their ecological success. Copyright © 2013 Elsevier B.V. All rights reserved.

  18. Diatom flora in subterranean ecosystems: a review

    Directory of Open Access Journals (Sweden)

    Elisa Falasco

    2014-09-01

    Full Text Available In scarcity of light and primary producers, subterranean ecosystems are generally extremely oligotrophic habitats, receiving poor supplies of degradable organic matter from the surface. Human direct impacts on cave ecosystems mainly derive from intensive tourism and recreational caving, causing important alterations to the whole subterranean environment. In particular, artificial lighting systems in show caves support the growth of autotrophic organisms (the so-called lampenflora, mainly composed of cyanobacteria, diatoms, chlorophytes, mosses and ferns producing exocellular polymeric substances (EPSs made of polysaccharides, proteins, lipids and nucleic acids. This anionic EPSs matrix mediates to the intercellular communications and participates to the chemical exchanges with the substratum, inducing the adsorption of cations and dissolved organic molecules from the cave formations (speleothems. Coupled with the metabolic activities of heterotrophic microorganisms colonising such layer (biofilm, this phenomenon may lead to the corrosion of the mineral surfaces. In this review, we investigate the formation of biofilms, especially of diatom-dominated ones, as a consequence of artificial lighting and its impacts on speleothems. Whenever light reaches the subterranean habitat (both artificially and naturally a relative high number of species of diatoms may indeed colonise it. Cave entrances, artificially illuminated walls and speleothems inside the cave are generally the preferred substrates. This review focuses on the diatom flora colonising subterranean habitats, summarizing the information contained in all the scientific papers published from 1900 up to date. In this review we provide a complete checklist of the diatom taxa recorded in subterranean habitats, including a total of 363 taxa, belonging to 82 genera. The most frequent and abundant species recorded in caves and other low light subterranean habitats are generally aerophilic and

  19. The DMM Bound

    DEFF Research Database (Denmark)

    Emiris, Ioannis Z.; Mourrain, Bernard; Tsigaridas, Elias

    2010-01-01

    In this paper we derive aggregate separation bounds, named after Davenport-Mahler-Mignotte (DMM), on the isolated roots of polynomial systems, specifically on the minimum distance between any two such roots. The bounds exploit the structure of the system and the height of the sparse (or toric) re...

  20. Bounded Gaussian process regression

    DEFF Research Database (Denmark)

    Jensen, Bjørn Sand; Nielsen, Jens Brehm; Larsen, Jan

    2013-01-01

    We extend the Gaussian process (GP) framework for bounded regression by introducing two bounded likelihood functions that model the noise on the dependent variable explicitly. This is fundamentally different from the implicit noise assumption in the previously suggested warped GP framework. We...

  1. Quantum Bounded Symmetric Domains

    OpenAIRE

    Vaksman, L. L.

    2008-01-01

    This is Leonid Vaksman's monograph "Quantum bounded symmetric domains" (in Russian), preceded with an English translation of the table of contents and (a part) of the introduction. Quantum bounded symmetric domains are interesting from several points of view. In particular, they provide interesting examples for noncommutative complex analysis (i.e., the theory of subalgebras of C^*-algebars) initiated by W. Arveson.

  2. Bounding species distribution models

    Directory of Open Access Journals (Sweden)

    Thomas J. STOHLGREN, Catherine S. JARNEVICH, Wayne E. ESAIAS,Jeffrey T. MORISETTE

    2011-10-01

    Full Text Available Species distribution models are increasing in popularity for mapping suitable habitat for species of management concern. Many investigators now recognize that extrapolations of these models with geographic information systems (GIS might be sensitive to the environmental bounds of the data used in their development, yet there is no recommended best practice for “clamping” model extrapolations. We relied on two commonly used modeling approaches: classification and regression tree (CART and maximum entropy (Maxent models, and we tested a simple alteration of the model extrapolations, bounding extrapolations to the maximum and minimum values of primary environmental predictors, to provide a more realistic map of suitable habitat of hybridized Africanized honey bees in the southwestern United States. Findings suggest that multiple models of bounding, and the most conservative bounding of species distribution models, like those presented here, should probably replace the unbounded or loosely bounded techniques currently used [Current Zoology 57 (5: 642–647, 2011].

  3. Bounding Species Distribution Models

    Science.gov (United States)

    Stohlgren, Thomas J.; Jarnevich, Cahterine S.; Morisette, Jeffrey T.; Esaias, Wayne E.

    2011-01-01

    Species distribution models are increasing in popularity for mapping suitable habitat for species of management concern. Many investigators now recognize that extrapolations of these models with geographic information systems (GIS) might be sensitive to the environmental bounds of the data used in their development, yet there is no recommended best practice for "clamping" model extrapolations. We relied on two commonly used modeling approaches: classification and regression tree (CART) and maximum entropy (Maxent) models, and we tested a simple alteration of the model extrapolations, bounding extrapolations to the maximum and minimum values of primary environmental predictors, to provide a more realistic map of suitable habitat of hybridized Africanized honey bees in the southwestern United States. Findings suggest that multiple models of bounding, and the most conservative bounding of species distribution models, like those presented here, should probably replace the unbounded or loosely bounded techniques currently used [Current Zoology 57 (5): 642-647, 2011].

  4. Diatom community structure on in-service cruise ship hulls.

    Science.gov (United States)

    Hunsucker, Kelli Zargiel; Koka, Abhishek; Lund, Geir; Swain, Geoffrey

    2014-10-01

    Diatoms are an important component of marine biofilms found on ship hulls. However, there are only a few published studies that describe the presence and abundance of diatoms on ships, and none that relate to modern ship hull coatings. This study investigated the diatom community structure on two in-service cruise ships with the same cruise cycles, one coated with an antifouling (AF) system (copper self-polishing copolymer) and the other coated with a silicone fouling-release (FR) system. Biofilm samples were collected during dry docking from representative areas of the ship and these provided information on the horizontal and vertical zonation of the hull, and intact and damaged coating and niche areas. Diatoms from the genera Achnanthes, Amphora and Navicula were the most common, regardless of horizontal ship zonation and coating type. Other genera were abundant, but their presence was more dependent on the ship zonation and coating type. Samples collected from damaged areas of the hull coating had a similar community composition to undamaged areas, but with higher diatom abundance. Diatom fouling on the niche areas differed from that of the surrounding ship hull and paralleled previous studies that investigated differences in diatom community structure on static and dynamically exposed coatings; niche areas were similar to static immersion and the hull to dynamic immersion. Additionally, diatom richness was greater on the ship with the FR coating, including the identification of several new genera to the biofouling literature, viz. Lampriscus and Thalassiophysa. These results are the first to describe diatom community composition on in-service ship hulls coated with a FR system. This class of coatings appears to have a larger diatom community compared to copper-based AF systems, with new diatom genera that have the ability to stick to ship hulls and withstand hydrodynamic forces, thus creating the potential for new problematic species in the biofilm.

  5. Probing physics beyond the standard model in diatomic molecules

    International Nuclear Information System (INIS)

    Denis, M.

    2017-01-01

    Nowadays, the incompleteness of the Standard Model of particles (SM) is largely acknowledged. One of its most obvious shortcomings is the lack of explanation for the huge surplus of matter over antimatter in the universe, the so-called baryon asymmetry of the universe. New CP (charge conjugation and spatial parity) violations absent in the SM are assumed to be responsible for this asymmetry. Such a violation could be observed, in ordinary matter through a set of interactions violating both parity and time-reversal symmetries (P, T -odd) among which the preponderant ones are the electron Electric Dipole Moment (eEDM), the electron-nucleon scalar-pseudoscalar (enSPS) and the nuclear magnetic quadrupole moment (nMQM) interactions. Hence, an experimental evidence of a non-zero P, T -odd interaction constant would be a probe of this New Physics beyond the Standard Model. The calculation of the corresponding molecular parameters is performed by making use of an elaborate four-component relativistic configuration interaction approach in polar diatomic molecules containing an actinide, that are particularly adequate systems for eEDM experiments, such as ThO that allowed for assigning the most constraining upper bound on the eEDM and ThF + that will be used in a forthcoming experiment. Those results will be of crucial importance in the interpretation of the measurements since the fundamental constants can only be evaluated if one combines both experimental energy shift measurements and theoretical molecular parameters. This manuscript proceeds as follows, after an introduction to the general background of the search of CP-violations and its consequences for the understanding of the Universe (Chapter 1), a presentation of the underlying theory of the evidence of such violation in ordinary matter, namely the P, T -odd sources of the Electric Dipole Moment of a many-electron system, as well as the relevant molecular parameters is given in Chapter 2. A similar introduction to

  6. An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum

    DEFF Research Database (Denmark)

    Nymark, Marianne; Valle, Kristin C; Brembu, Tore

    2009-01-01

    Photosynthetic diatoms are exposed to rapid and unpredictable changes in irradiance and spectral quality, and must be able to acclimate their light harvesting systems to varying light conditions. Molecular mechanisms behind light acclimation in diatoms are largely unknown. We set out to investigate...... phase (3-12 h) and a late acclimation phase (12-48 h). The initial phase is recognized by strong and rapid regulation of genes encoding proteins involved in photosynthesis, pigment metabolism and reactive oxygen species (ROS) scavenging systems. A significant increase in light protecting metabolites...... occur together with the induction of transcriptional processes involved in protection of cellular structures at this early phase. During the following phases, the metabolite profiling display a pronounced decrease in light harvesting pigments, whereas the variable fluorescence measurements show...

  7. Centennial-scale variations in diatom productivity off Peru over the last 3000 years

    Science.gov (United States)

    Fleury, Sophie; Crosta, Xavier; Schneider, Ralph; Blanz, Thomas; Ther, Olivier; Martinez, Philippe; Kim, Jung-Hyun

    2016-04-01

    The Peruvian coastal upwelling is one of the most productive systems in the global ocean, with important impacts on the carbon cycle. Primary productivity there displays strong variations at the inter-annual to decadal timescales. However, down-core investigations rarely reach sufficient temporal resolution to assess the response of productivity to climatic variations at these timescales beyond the instrumental and historical periods. We here analyzed diatom assemblages, sea-surface temperatures, nitrogen and organic carbon contents on a laminated sediment core from the Peruvian continental shelf to trace variations in regional productivity over the last 3000 years. Our record provides evidence for different climatic and oceanic conditions with more humid and less productive conditions older than 2500 Cal years BP and drier and more productive conditions younger than 2500 Cal years BP. The last 2500 years also present much stronger centennial-scale variability with the occurrence of six intervals with higher total diatom abundances and stronger percentages in upwelling-related diatom species, representative of intensified productivity, congruent to lower percentages in benthic diatoms, indicative of reduced rainfall. These six periods were synchronous to intervals of enhanced Walker circulation, suggesting a strong imprint of the Pacific zonal circulation on productivity variations off Peru. Our record also demonstrates that SSTs did not vary in phase with productivity, arguing against the idea of regional SSTs controlled by the upwelling intensity, but were rather in agreement to SST records off southern Chile, suggesting that Peruvian SSTs variations were largely controlled by oceanic currents at southern high latitudes.

  8. An integrated analysis of molecular acclimation to high light in the marine diatom Phaeodactylum tricornutum.

    Directory of Open Access Journals (Sweden)

    Marianne Nymark

    2009-11-01

    Full Text Available Photosynthetic diatoms are exposed to rapid and unpredictable changes in irradiance and spectral quality, and must be able to acclimate their light harvesting systems to varying light conditions. Molecular mechanisms behind light acclimation in diatoms are largely unknown. We set out to investigate the mechanisms of high light acclimation in Phaeodactylum tricornutum using an integrated approach involving global transcriptional profiling, metabolite profiling and variable fluorescence technique. Algae cultures were acclimated to low light (LL, after which the cultures were transferred to high light (HL. Molecular, metabolic and physiological responses were studied at time points 0.5 h, 3 h, 6 h, 12 h, 24 h and 48 h after transfer to HL conditions. The integrated results indicate that the acclimation mechanisms in diatoms can be divided into an initial response phase (0-0.5 h, an intermediate acclimation phase (3-12 h and a late acclimation phase (12-48 h. The initial phase is recognized by strong and rapid regulation of genes encoding proteins involved in photosynthesis, pigment metabolism and reactive oxygen species (ROS scavenging systems. A significant increase in light protecting metabolites occur together with the induction of transcriptional processes involved in protection of cellular structures at this early phase. During the following phases, the metabolite profiling display a pronounced decrease in light harvesting pigments, whereas the variable fluorescence measurements show that the photosynthetic capacity increases strongly during the late acclimation phase. We show that P. tricornutum is capable of swift and efficient execution of photoprotective mechanisms, followed by changes in the composition of the photosynthetic machinery that enable the diatoms to utilize the excess energy available in HL. Central molecular players in light protection and acclimation to high irradiance have been identified.

  9. A contribution to the epipsammic diatom flora of Estonia

    NARCIS (Netherlands)

    Cremer, H.

    2006-01-01

    A study of the modern epipsammic diatom flora in Lake Karujärv, Saaremaa Island, Estonia revealed seventy-one taxa representing thirty-one genera. The identity of all taxa is documented with light micrographs. Most abundant taxa of the epipsammic diatom community were Achnanthidium minutissimum

  10. Diatom distribution in the surficial sediments of Lake Fuxian, Yunnan ...

    African Journals Online (AJOL)

    ajl yemi

    2011-11-30

    Nov 30, 2011 ... The diatom abundances per gram dry weight sediment vary between 18.4 × 106 and 66.9 × 106 valves (Figure 2). Abundances per gram dry weight of the eight most abundant diatom taxa are shown in Figure 3. The DCA diagram shows centroids of ecoregions in the ordination space of the first axes.

  11. Isolation of diatom Navicula cryptocephala and characterization of ...

    African Journals Online (AJOL)

    Geologists claim that much of crude oil comes from diatoms. In this study diatom Navicula cryptocephala, isolated from fresh water source was grown on suitable media for extracting and characterizing the oil for biodiesel production. Three methods namely, shake flask, polythene bag and photobioreactor were adopted for ...

  12. Interference patterns and extinction ratio of the diatom Coscinodiscus granii

    DEFF Research Database (Denmark)

    Maibohm, Christian; Friis, Søren Michael Mørk; Ellegaard, M.

    2015-01-01

    We report experimental and theoretical verification of the nature and position of multiple interference points of visible light transmitted through the valve of the centric diatom species Coscinodiscus granii. Furthermore, by coupling the transmitted light into an optical fiber and moving the dia...... the diatom valve between constructive and destructive interference points, an extinction ratio of 20 dB is shown...

  13. Preparation and method of study of fossil diatoms

    Digital Repository Service at National Institute of Oceanography (India)

    Setty, M.G.A.P.

    to be exercised during the preparation of the samples A method for the preparation of strewn slides is then explained A detailed procedure for the study of diatom-strewn slides under the microscope, using the "England finder", is described, and a note on diatom...

  14. Contributions of the Diatom flora of South Africa

    CSIR Research Space (South Africa)

    Giffen, MH

    1966-01-01

    Full Text Available The diatom flora of the marine littoral of South African coatal river estuaries is very superficially known. In a previous contribution (Giffen 1963) the author dealt with the diatoms of the Eastern Cape Province estuaries namely the Gulu River...

  15. Arctic Diatoms - Diversity, Plankton Interactions and Poulation Dynamics

    DEFF Research Database (Denmark)

    Tammilehto, Anna

    are often dominated by diatoms. They are single-celled, eukaryotic algae, which play an essential role in ocean carbon and silica cycles. Many species of the diatom genus Pseudo-nitzschia Peragallo produce a neurotoxin, domoic acid (DA), which can be transferred to higher levels in food webs causing amnesic...

  16. Community participation in river monitoring using diatoms: a case ...

    African Journals Online (AJOL)

    This study demonstrates that there is great potential for the use of diatoms in community monitoring programmes, mainly due to the ease and rapidity with which samples can be collected. The participation of communities is also vital in gaining a more complete overview of the diatom species occurring in South Africa.

  17. Records of Diatoms and Physicochemical Parameters of Seasonal ...

    African Journals Online (AJOL)

    A study of diatoms species composition, associated with four ponds in Zaria, Northern Nigeria was carried out between November 2005–January 2006 and June–August 2006. Twenty three taxa of diatoms were recorded in the study. Multivariate analysis showed that there were significant positive and negative ...

  18. Spatial And Temporal Distribution Of Epiphytic Diatoms On ...

    African Journals Online (AJOL)

    The epiphytic diatoms growing on seaweeds inhabiting Port Said coast were investigated seasonally during the period from summer 2004 to spring 2005. A total of 62 species of the epiphytic diatoms were recorded. They comprised fifty nine pennate and three centric forms. The important components in the flora of the ...

  19. Diatoms respire nitrate to survive dark and anoxic conditions

    Science.gov (United States)

    Kamp, Anja; de Beer, Dirk; Nitsch, Jana L.; Lavik, Gaute; Stief, Peter

    2011-01-01

    Diatoms survive in dark, anoxic sediment layers for months to decades. Our investigation reveals a correlation between the dark survival potential of marine diatoms and their ability to accumulate NO3− intracellularly. Axenic strains of benthic and pelagic diatoms that stored 11–274 mM NO3− in their cells survived for 6–28 wk. After sudden shifts to dark, anoxic conditions, the benthic diatom Amphora coffeaeformis consumed 84–87% of its intracellular NO3− pool within 1 d. A stable-isotope labeling experiment proved that 15NO3− consumption was accompanied by the production and release of 15NH4+, indicating dissimilatory nitrate reduction to ammonium (DNRA). DNRA is an anaerobic respiration process that is known mainly from prokaryotic organisms, and here shown as dissimilatory nitrate reduction pathway used by a eukaryotic phototroph. Similar to large sulfur bacteria and benthic foraminifera, diatoms may respire intracellular NO3− in sediment layers without O2 and NO3−. The rapid depletion of the intracellular NO3− storage, however, implies that diatoms use DNRA to enter a resting stage for long-term survival. Assuming that pelagic diatoms are also capable of DNRA, senescing diatoms that sink through oxygen-deficient water layers may be a significant NH4+ source for anammox, the prevalent nitrogen loss pathway of oceanic oxygen minimum zones. PMID:21402908

  20. Diatoms respire nitrate to survive dark and anoxic conditions

    DEFF Research Database (Denmark)

    Kamp, Anja; de Beer, Dirk; Nitsch, Jana L.

    2011-01-01

    Diatoms survive in dark, anoxic sediment layers for months to decades. Our investigation reveals a correlation between the dark survival potential of marine diatoms and their ability to accumulate NO3− intracellularly. Axenic strains of benthic and pelagic diatoms that stored 11–274 mM NO3......− in their cells survived for 6–28 wk. After sudden shifts to dark, anoxic conditions, the benthic diatom Amphora coffeaeformis consumed 84–87% of its intracellular NO3− pool within 1 d. A stable-isotope labeling experiment proved that 15NO3− consumption was accompanied by the production and re- lease of 15NH4......, diatoms may respire intracellular NO3− in sediment layers without O2 and NO3−. The rapid depletion of the intracellular NO3− storage, however, implies that diatoms use DNRA to enter a resting stage for long-term survival. Assuming that pelagic diatoms are also capable of DNRA, senescing diatoms that sink...

  1. Diatom-based water quality monitoring in southern Africa ...

    African Journals Online (AJOL)

    The purpose of this review is to summarise the challenges and future prospects associated with biological water quality monitoring using diatoms with special focus on southern Africa. Much work still needs to be carried out on diatom tolerances, ecological preferences and ecophysiology. It is recommended that past ...

  2. The health of benthic diatom assemblages in lower stretch

    Indian Academy of Sciences (India)

    This study examines the ecological state of epilithic diatom assemblages along the lower stretch of Mandakini, a glacier-fed Himalayan river. The diatoms were sampled at four stations during winter and summer, only once in each season. Valve counts were obtained from Naphrax mounts prepared from each sample.

  3. The Central Carbon and Energy Metabolism of Marine Diatoms

    Directory of Open Access Journals (Sweden)

    Adriano Nunes-Nesi

    2013-05-01

    Full Text Available Diatoms are heterokont algae derived from a secondary symbiotic event in which a eukaryotic host cell acquired an eukaryotic red alga as plastid. The multiple endosymbiosis and horizontal gene transfer processes provide diatoms unusual opportunities for gene mixing to establish distinctive biosynthetic pathways and metabolic control structures. Diatoms are also known to have significant impact on global ecosystems as one of the most dominant phytoplankton species in the contemporary ocean. As such their metabolism and growth regulating factors have been of particular interest for many years. The publication of the genomic sequences of two independent species of diatoms and the advent of an enhanced experimental toolbox for molecular biological investigations have afforded far greater opportunities than were previously apparent for these species and re-invigorated studies regarding the central carbon metabolism of diatoms. In this review we discuss distinctive features of the central carbon metabolism of diatoms and its response to forthcoming environmental changes and recent advances facilitating the possibility of industrial use of diatoms for oil production. Although the operation and importance of several key pathways of diatom metabolism have already been demonstrated and determined, we will also highlight other potentially important pathways wherein this has yet to be achieved.

  4. The relevance of diatoms for water quality assessment in South ...

    African Journals Online (AJOL)

    Water quality assessment protocols based on the use of diatoms are now well developed and their value substantiated at an international level. The use of diatoms is not designed or intended to be a “rapid” technology. The detailed level of information generated from the procedure outweighs perceived disadvantages of ...

  5. 9 Records of Diatoms and Physicochemical.cdr

    African Journals Online (AJOL)

    Administrator

    Introduction. Diatoms grow in a wide range of habitats, which could be oligotrophic or eutrophic, acidic or alkaline, fresh, brackish or marine, standing and flowing waters. Diatoms constitute the highest percentage (70 –95%) of the flora in aquatic systems, though this percentage usually occurs mainly in the.

  6. The effect of antibiotics on diatom communities

    Digital Repository Service at National Institute of Oceanography (India)

    De; Anil, A.C.

    environment – a review – Part II. Chemosphere, 2009, 75, 435–441. 21. Martinez, J. L., Environmental pollution by antibiotics and by antibiotic resistance determinants. Environ. Pollut., 2009, 157, 2893–2902. 22. Gavalchin, J. and Katz, S. E... CURRENT SCIENCE, VOL. 102, NO. 11, 10 JUNE 2012 1552 *For correspondence. (e-mail: acanil@nio.org) The effect of antibiotics on diatom communities Priya M. D’Costa and Arga Chandrashekar Anil* CSIR-National Institute of Oceanography, Dona Paula, Goa...

  7. Applications of Diatoms as Potential Microalgae in Nanobiotechnology

    Directory of Open Access Journals (Sweden)

    Ahmad Yari Khosroushahi

    2012-05-01

    Full Text Available Introduction: Diatoms are single cell eukaryotic microalgae, which present in nearly every water habitat make them ideal tools for a wide range of applications such as oil explora­tion, forensic examination, environmental indication, biosilica pattern generation, toxicity testing and eutrophication of aqueous ecosystems. Methods: Essential information on diatoms were reviewed and discussed towards impacts of diatoms on biosynthesis and bioremediation. Results: In this review, we present the recent progress in this century on the application of diatoms in waste degradation, synthesis of biomaterial, biomineraliza­tion, toxicity and toxic effects of mineral elements evaluations. Conclusion: Diatoms can be considered as metal toxicity bioindicators and they can be applied for biomineralization, synthesis of biomaterials, and degradation of wastes.

  8. [Diatoms in drowned and postmortem immersed rabbits' lungs].

    Science.gov (United States)

    Li, Xiang-Yang; Zhao, Jian; Liu, Chao; Hu, Sun-Lin; Zhang, You-Chuan; Wen, Jin-Feng; Cheng, Jian-Ding

    2014-04-01

    To investigate the numbers, sizes and types distribution of diatoms in drowned and postmortem immersed rabbits' lungs. Sixty-two rabbits were randomly divided into drowning group (n = 30), postmortem immersion group (n = 30) and land death group (n=2), and the diatoms in each lung lobe were analyzed quantitatively and qualitatively by microwave digestion and scanning electron microscopy. In the drowning group, the diatoms were detected in each lung lobe with Cyclotella and Melosira in the majority. In the postmortem immersion group, Cyclotella was in the majority. And the diatoms weren't detected in some lung lobes in postmortem immersion. There were significant differences in the detection rates of upper lobe of left lung, middle lobe and cardiac lobe of right lung in two groups (P diatoms in drowned and postmortem immersed rabbits' lungs can be analyzed and used as references for testing theory.

  9. Diuron causes sinking retardation and physiochemical alteration in marine diatoms Thalassiosira pseudonana and Skeletonema marinoi-dohrnii complex.

    Science.gov (United States)

    Khanam, Mst Ruhina Margia; Shimasaki, Yohei; Hosain, Md Zahangir; Mukai, Koki; Tsuyama, Michito; Qiu, Xuchun; Tasmin, Rumana; Goto, Hiroshi; Oshima, Yuji

    2017-05-01

    The present research investigated the effect of diuron on sinking rate and the physiochemical changes in two marine diatoms, Thalassiosira pseudonana (single-celled species) and Skeletonema marinoi-dohrnii complex (chain-forming species). The results revealed that the sinking rate of both diatoms exposed to diuron at a level of 50% effective concentration for growth (EC50) decreased significantly compared with the control. Photosynthetic performance (Fv/Fm and PI ABS ) of both diatoms also decreased significantly with diuron exposure. The number of cells per chain in S. marinoi-dohrnii decreased significantly with diuron treatment, but T. pseudonana cell diameter remained stable. Neutral lipid concentration per cell was significantly higher compared with control at 72 h in both diatom species exposed to EC50 level diuron. And water-soluble protein concentration per cell at 72 h was lower than control in the T. pseudonana EC50 group only. These biochemical changes may decrease specific gravity of cells and seems to cause a decreased sinking rate in diatoms. The positive significant correlation between the numbers of cells per chain and sinking rate in S. marinoi-dohrnii indicated that chain length is also an important factor in sinking rate regulation for chain-forming diatoms. Thus, our present study suggested that suppression of photosynthetic performance and the resultant physiochemical changes induced the decreased sinking rate that may inhibit the normal survival strategy (avoidance from the surface layer where strong light either causes photo-inhibition or interrupts resting cell formation). Therefore, the use of antifouling agents should be considered for the sustainable marine environment. Copyright © 2017 Elsevier Ltd. All rights reserved.

  10. Variation partitioning of diatom species data matrices: Understanding the influence of multiple factors on benthic diatom communities in tropical streams

    Energy Technology Data Exchange (ETDEWEB)

    Bere, Taurai, E-mail: tbere2015@gmail.com; Mangadze, Tinotenda; Mwedzi, Tongai

    2016-10-01

    Elucidating the confounding influence of multiple environmental factors on benthic diatom communities is important in developing water quality predictive models for better guidance of stream management efforts. The objective of this study was to explore the relative impact of metal pollution and hydromorphological alterations in, addition to nutrient enrichment and organic pollution, on diatom taxonomic composition with the view to improve stream diatom-based water quality inference models. Samples were collected twice at 20 sampling stations in the tropical Manyame Catchment, Zimbabwe. Diatom, macroinvertebrate communities and environmental factors were sampled and analysed. The variations in diatom community composition explained by different categories of environmental factors were analysed using canonical correspondence analysis using variance partitioning (partial CCA). The following variations were explained by the different predictor matrices: nutrient levels and organic pollution - 10.4%, metal pollution - 8.3% and hydromorphological factors - 7.9%. Thus, factors other than nutrient levels and organic pollution explain additional significant variation in these diatom communities. Development of diatom-based stream water quality inference models that incorporate metal pollution and hydromorphological alterations, where these are key issues, is thus deemed necessary. - Highlights: • Confounding influences of multiple environmental factors on diatom communities are elucidated. • Variation explained: nutrients + organic pollution - 10.4%, metals - 8.3% and hydromorphological factors - 7.9%. • Calibration of existing or development of new indices may be necessary.

  11. Interaction of Freshwater Diatom with Gold Nanoparticles: Adsorption, Assimilation, and Stabilization by Cell Exometabolites

    Directory of Open Access Journals (Sweden)

    Aridane G. González

    2018-03-01

    presence of diatoms and their exudates. During photosynthetic activity and the pH rising above 9 in the vicinity of diatom cells, the adsorption of AuNPs strongly decreases, which indicates a decreasing potential toxicity of AuNPs for photosynthesizing cells. The present study demonstrates the efficiency of a thermodynamic and kinetic approach for understanding gold nanoparticles interaction with aquatic freshwater peryphytic microorganisms.

  12. Diatom Milking: A Review and New Approaches

    Directory of Open Access Journals (Sweden)

    Vandana Vinayak

    2015-04-01

    Full Text Available The rise of human populations and the growth of cities contribute to the depletion of natural resources, increase their cost, and create potential climatic changes. To overcome difficulties in supplying populations and reducing the resource cost, a search for alternative pharmaceutical, nanotechnology, and energy sources has begun. Among the alternative sources, microalgae are the most promising because they use carbon dioxide (CO2 to produce biomass and/or valuable compounds. Once produced, the biomass is ordinarily harvested and processed (downstream program. Drying, grinding, and extraction steps are destructive to the microalgal biomass that then needs to be renewed. The extraction and purification processes generate organic wastes and require substantial energy inputs. Altogether, it is urgent to develop alternative downstream processes. Among the possibilities, milking invokes the concept that the extraction should not kill the algal cells. Therefore, it does not require growing the algae anew. In this review, we discuss research on milking of diatoms. The main themes are (a development of alternative methods to extract and harvest high added value compounds; (b design of photobioreactors; (c biodiversity and (d stress physiology, illustrated with original results dealing with oleaginous diatoms.

  13. Diatom Milking: A Review and New Approaches

    Science.gov (United States)

    Vinayak, Vandana; Manoylov, Kalina M.; Gateau, Hélène; Blanckaert, Vincent; Hérault, Josiane; Pencréac’h, Gaëlle; Marchand, Justine; Gordon, Richard; Schoefs, Benoît

    2015-01-01

    The rise of human populations and the growth of cities contribute to the depletion of natural resources, increase their cost, and create potential climatic changes. To overcome difficulties in supplying populations and reducing the resource cost, a search for alternative pharmaceutical, nanotechnology, and energy sources has begun. Among the alternative sources, microalgae are the most promising because they use carbon dioxide (CO2) to produce biomass and/or valuable compounds. Once produced, the biomass is ordinarily harvested and processed (downstream program). Drying, grinding, and extraction steps are destructive to the microalgal biomass that then needs to be renewed. The extraction and purification processes generate organic wastes and require substantial energy inputs. Altogether, it is urgent to develop alternative downstream processes. Among the possibilities, milking invokes the concept that the extraction should not kill the algal cells. Therefore, it does not require growing the algae anew. In this review, we discuss research on milking of diatoms. The main themes are (a) development of alternative methods to extract and harvest high added value compounds; (b) design of photobioreactors; (c) biodiversity and (d) stress physiology, illustrated with original results dealing with oleaginous diatoms. PMID:25939034

  14. Importance of sampling frequency when collecting diatoms

    KAUST Repository

    Wu, Naicheng

    2016-11-14

    There has been increasing interest in diatom-based bio-assessment but we still lack a comprehensive understanding of how to capture diatoms’ temporal dynamics with an appropriate sampling frequency (ASF). To cover this research gap, we collected and analyzed daily riverine diatom samples over a 1-year period (25 April 2013–30 April 2014) at the outlet of a German lowland river. The samples were classified into five clusters (1–5) by a Kohonen Self-Organizing Map (SOM) method based on similarity between species compositions over time. ASFs were determined to be 25 days at Cluster 2 (June-July 2013) and 13 days at Cluster 5 (February-April 2014), whereas no specific ASFs were found at Cluster 1 (April-May 2013), 3 (August-November 2013) (>30 days) and Cluster 4 (December 2013 - January 2014) (<1 day). ASFs showed dramatic seasonality and were negatively related to hydrological wetness conditions, suggesting that sampling interval should be reduced with increasing catchment wetness. A key implication of our findings for freshwater management is that long-term bio-monitoring protocols should be developed with the knowledge of tracking algal temporal dynamics with an appropriate sampling frequency.

  15. Importance of sampling frequency when collecting diatoms

    Science.gov (United States)

    Wu, Naicheng; Faber, Claas; Sun, Xiuming; Qu, Yueming; Wang, Chao; Ivetic, Snjezana; Riis, Tenna; Ulrich, Uta; Fohrer, Nicola

    2016-11-01

    There has been increasing interest in diatom-based bio-assessment but we still lack a comprehensive understanding of how to capture diatoms’ temporal dynamics with an appropriate sampling frequency (ASF). To cover this research gap, we collected and analyzed daily riverine diatom samples over a 1-year period (25 April 2013-30 April 2014) at the outlet of a German lowland river. The samples were classified into five clusters (1-5) by a Kohonen Self-Organizing Map (SOM) method based on similarity between species compositions over time. ASFs were determined to be 25 days at Cluster 2 (June-July 2013) and 13 days at Cluster 5 (February-April 2014), whereas no specific ASFs were found at Cluster 1 (April-May 2013), 3 (August-November 2013) (>30 days) and Cluster 4 (December 2013 - January 2014) (<1 day). ASFs showed dramatic seasonality and were negatively related to hydrological wetness conditions, suggesting that sampling interval should be reduced with increasing catchment wetness. A key implication of our findings for freshwater management is that long-term bio-monitoring protocols should be developed with the knowledge of tracking algal temporal dynamics with an appropriate sampling frequency.

  16. Shift in the species composition of the diatom community in the eutrophic Mauritanian coastal upwelling: Results from a multi-year sediment trap experiment (2003-2010)

    Science.gov (United States)

    Romero, Oscar E.; Fischer, Gerhard

    2017-12-01

    A multiannual, continuous sediment trap experiment was conducted at the mooring site CBeu (Cape Blanc eutrophic, ca. 20 °N, ca. 18 °W; trap depth = 1256-1296 m) in the high-productive Mauritanian coastal upwelling. Here we present fluxes and the species-specific composition of the diatom assemblage, and fluxes of biogenic silica (BSi, opal) and total organic carbon (TOC) for the time interval June 2003-Feb 2010. Flux ranges of studied parameters are (i) total diatoms = 1.2 ∗ 108-4.7 ∗ 104 valves m-2 d-1 (average = 5.9 × 106 valves ± 1.4 × 107); (ii) BSi = 296-0.5 mg m-2 d-1 (average = 41.1 ± 53.5 mg m-2 d-1), and (iii) TOC = 97-1 mg m-2 d-1 (average = 20.5 ± 17.8 mg m-2 d-1). Throughout the experiment, the overall good match of total diatom, BSi and TOC fluxes is reasonably consistent and reflects well the temporal occurrence of the main Mauritanian upwelling season. Spring and summer are the most favorable seasons for diatom production and sedimentation: out of the recorded 14 diatom maxima of different magnitude, six occurred in spring and four in summer. The diverse diatom community at site CBeu is composed of four main assemblages: benthic, coastal upwelling, coastal planktonic and open-ocean diatoms, reflecting different productivity conditions and water masses. A striking feature of the temporal variability of the diatom populations is the persistent pattern of seasonal groups' contribution: benthic and coastal upwelling taxa dominated during the main upwelling season in spring, while open-ocean diatoms were more abundant in fall and winter, when the upper water column becomes stratified, upwelling relaxes and productivity decreases. The relative abundance of benthic diatoms strongly increased after 2006, yet their spring-summer contribution remained high until the end of the trap experiment. The occurrence of large populations of benthic diatoms at the hemipelagic CBeu site is interpreted to indicate transport from shallow waters via nepheloid

  17. The Charm and Beauty of Strong Interactions

    Science.gov (United States)

    El-Bennich, Bruno

    2018-01-01

    We briefly review common features and overlapping issues in hadron and flavor physics focussing on continuum QCD approaches to heavy bound states, their mass spectrum and weak decay constants in different strong interaction models.

  18. Diatoms as indicators of water quality in the Jukskei-Crocodile river ...

    African Journals Online (AJOL)

    South Africa has a long legacy of diatom research. The eminent diatomist Dr BJ Cholnoky spent much of his working life examining and enumerating diatom communities found in Southern Africa. Most if not all of Cholnoky's collected diatom material in the form of mounted material on glass slides accompanied by diatom ...

  19. Diatoms from a peat bog on the Pešter plateau (southwestern Serbia: New records for diatom flora of Serbia

    Directory of Open Access Journals (Sweden)

    Vidaković Danijela

    2016-01-01

    Full Text Available The distribution of diatoms was studied in three types of diatom communities (epiphytes, benthos and plankton of a peat bog on the Pešter plateau. The observed diatom flora inhabited all investigated communities, comprising in total 250 taxa in 53 genera. Among them, 45 taxa were new records for the Serbian diatom flora. Identified taxa belonged to different groups of algae, however alkaliphile diatoms were dominant. New ecological data for Encyonopsis minuta, Pinnularia isostauron and P. marchica are presented here. All the diatoms were documented by light micrographs, and brief notes on their morphology, distribution and ecology are provided. [Projekat Ministarstva nauke Republike Srbije, br. TR 037009

  20. Diatom Resting Spore Formation and Carbon Export in the Southern Ocean

    Science.gov (United States)

    Rembauville, M.; Salter, I.; Blain, S.

    2016-02-01

    In the Southern Ocean, numerous observations suggest a strong attenuation of the vertical carbon flux with depth. This is probably due to efficient particle reprocessing by zooplankton and high remineralization rates by active bacterial communities in productive areas. Resting spore formation by diatoms is an ecological strategy frequently observed in neritic productive areas. Until recently, the impact of this process on biogeochemical cycles and more specifically carbon export was neglected. We present chemical and diatom export fluxes from sediment trap deployments located in the vicinity of Subantarctic Islands: South Georgia, Crozet and Kerguelen. For each island system, an annual record of export is available in an HNLC site and a productive site. Carbon export appears to be low at the three sites (exported diatom community. We highlight the important contribution (40-60 %) of resting spores to carbon export at different depth horizons in the productive, naturally-fertilized areas, supporting their high transfer efficiency. This similar mechanism observed in the three island systems suggests that resting spore formation is a significant process driving carbon export in the Southern Ocean.

  1. Validation of EMP bounds

    Energy Technology Data Exchange (ETDEWEB)

    Warne, L.K.; Merewether, K.O.; Chen, K.C.; Jorgenson, R.E.; Morris, M.E.; Solberg, J.E.; Lewis, J.G. [Sandia National Labs., Albuquerque, NM (United States); Derr, W. [Derr Enterprises, Albuquerque, NM (United States)

    1996-07-01

    Test data on canonical weapon-like fixtures are used to validate previously developed analytical bounding results. The test fixtures were constructed to simulate (but be slightly worse than) weapon ports of entry but have known geometries (and electrical points of contact). The exterior of the test fixtures exhibited exterior resonant enhancement of the incident fields at the ports of entry with magnitudes equal to those of weapon geometries. The interior consisted of loaded transmission lines adjusted to maximize received energy or voltage but incorporating practical weapon geometrical constraints. New analytical results are also presented for bounding the energies associated with multiple bolt joints and for bounding the exterior resonant enhancement of the exciting fields.

  2. Massive Galileon positivity bounds

    Science.gov (United States)

    de Rham, Claudia; Melville, Scott; Tolley, Andrew J.; Zhou, Shuang-Yong

    2017-09-01

    The EFT coefficients in any gapped, scalar, Lorentz invariant field theory must satisfy positivity requirements if there is to exist a local, analytic Wilsonian UV completion. We apply these bounds to the tree level scattering amplitudes for a massive Galileon. The addition of a mass term, which does not spoil the non-renormalization theorem of the Galileon and preserves the Galileon symmetry at loop level, is necessary to satisfy the lowest order positivity bound. We further show that a careful choice of successively higher derivative corrections are necessary to satisfy the higher order positivity bounds. There is then no obstruction to a local UV completion from considerations of tree level 2-to-2 scattering alone. To demonstrate this we give an explicit example of such a UV completion.

  3. Properties of Water Bound in Hydrogels

    Directory of Open Access Journals (Sweden)

    Vladimir M. Gun’ko

    2017-10-01

    Full Text Available In this review, the importance of water in hydrogel (HG properties and structure is analyzed. A variety of methods such as 1H NMR (nuclear magnetic resonance, DSC (differential scanning calorimetry, XRD (X-ray powder diffraction, dielectric relaxation spectroscopy, thermally stimulated depolarization current, quasi-elastic neutron scattering, rheometry, diffusion, adsorption, infrared spectroscopy are used to study water in HG. The state of HG water is rather non-uniform. According to thermodynamic features of water in HG, some of it is non-freezing and strongly bound, another fraction is freezing and weakly bound, and the third fraction is non-bound, free water freezing at 0 °C. According to structural features of water in HG, it can be divided into two fractions with strongly associated and weakly associated waters. The properties of the water in HG depend also on the amounts and types of solutes, pH, salinity, structural features of HG functionalities.

  4. Role of diatoms in the biological carbon pump

    Science.gov (United States)

    Treguer, P. J.; Lasbleiz, M.

    2016-12-01

    Diatoms are major players in the biological carbon pump. However, are their role correctly represented in biogeochemical models? 1-The classic view of the biological carbon pump considers that diatoms as efficient transporters of labile organic carbon to the mesopelagic layer but not to the CO2 sequestration layer. However, this view is challenged by qualitative and quantitative data related to the functioning of the biological carbon pump, both for the modern and the paleo-ocean. They show that massive and rapid pulsed export of organic carbon to the CO2 sequestration layer occurs when unfavorable conditions for diatoms to grow up prevail either in the surface or in the subsurface deep chlorophyll maximum. 2-In most plankton functional type (PFT) models diatoms are usually represent as a single FTP. However, recent studies related to naturally iron-fertilized systems show that (1) the responses of the cellular content of diatoms to iron availability are very variable from one species of diatoms to another, and that (2) the diatom community composition directly impacts the particulate organic carbon export efficiency. Implications of these two issues for marine biogeochemistry and ecosystem modeling will be discussed.

  5. Molecular Detection of a Potentially Toxic Diatom Species

    Directory of Open Access Journals (Sweden)

    Bidhan Chandra Dhar

    2015-05-01

    Full Text Available A few diatom species produce toxins that affect human and animal health. Among these, members of the Pseudo-nitzschia genus were the first diatoms unambiguously identified as producer of domoic acid, a neurotoxin affecting molluscan shell-fish, birds, marine mammals, and humans. Evidence exists indicating the involvement of another diatom genus, Amphora, as a potential producer of domoic acid. We present a strategy for the detection of the diatom species Amphora coffeaeformis based on the development of species-specific oligonucleotide probes and their application in microarray hybridization experiments. This approach is based on the use of two marker genes highly conserved in all diatoms, but endowed with sufficient genetic divergence to discriminate diatoms at the species level. A region of approximately 450 bp of these previously unexplored marker genes, coding for elongation factor 1-a (eEF1-a and silicic acid transporter (SIT, was used to design oligonucleotide probes that were tested for specificity in combination with the corresponding fluorescently labeled DNA targets. The results presented in this work suggest a possible use of this DNA chip technology for the selective detection of A. coffeaeformis in environmental settings where the presence of this potential toxin producer may represent a threat to human and animal health. In addition, the same basic approach can be adapted to a wider range of diatoms for the simultaneous detection of microorganisms used as biomarkers of different water quality levels.

  6. Metatranscriptome analyses indicate resource partitioning between diatoms in the field.

    Science.gov (United States)

    Alexander, Harriet; Jenkins, Bethany D; Rynearson, Tatiana A; Dyhrman, Sonya T

    2015-04-28

    Diverse communities of marine phytoplankton carry out half of global primary production. The vast diversity of the phytoplankton has long perplexed ecologists because these organisms coexist in an isotropic environment while competing for the same basic resources (e.g., inorganic nutrients). Differential niche partitioning of resources is one hypothesis to explain this "paradox of the plankton," but it is difficult to quantify and track variation in phytoplankton metabolism in situ. Here, we use quantitative metatranscriptome analyses to examine pathways of nitrogen (N) and phosphorus (P) metabolism in diatoms that cooccur regularly in an estuary on the east coast of the United States (Narragansett Bay). Expression of known N and P metabolic pathways varied between diatoms, indicating apparent differences in resource utilization capacity that may prevent direct competition. Nutrient amendment incubations skewed N/P ratios, elucidating nutrient-responsive patterns of expression and facilitating a quantitative comparison between diatoms. The resource-responsive (RR) gene sets deviated in composition from the metabolic profile of the organism, being enriched in genes associated with N and P metabolism. Expression of the RR gene set varied over time and differed significantly between diatoms, resulting in opposite transcriptional responses to the same environment. Apparent differences in metabolic capacity and the expression of that capacity in the environment suggest that diatom-specific resource partitioning was occurring in Narragansett Bay. This high-resolution approach highlights the molecular underpinnings of diatom resource utilization and how cooccurring diatoms adjust their cellular physiology to partition their niche space.

  7. An aqueous route to organically functionalized silica diatom skeletons

    International Nuclear Information System (INIS)

    Fowler, Christabel E.; Buchber, Catherine; Lebeau, Benedicte; Patarin, Joel; Delacote, Cyril; Walcarius, Alain

    2007-01-01

    Diatomaceous earth was functionalized by grafting organotrialkoxysilane precursors onto the surface of the porous silica cell walls of this biomineral. Vinyl- and mercapto-containing structures were prepared in aqueous media without disruption of the diatomic architecture. Successful grafting of the organic moieties was confirmed using solid state 29 Si MAS NMR spectroscopy, and the presence of the intact diatom framework by scanning electron microscopy. The sorption properties of mercaptopropyl-functionalized diatoms towards heavy metals was studied by measuring the accessibility and diffusion rates of mercury(II) species to the binding sites (-SH) by the means of electrochemical methods

  8. The asymptotic theory of resonance charge exchange between diatomics

    International Nuclear Information System (INIS)

    Yevsyev, A.V.; Radtsig, A.A.; Smirnov, B.M.

    1982-01-01

    The asymptotic theory of resonance charge exchange between a ground-state diatomic molecular ion and its neutral parent is presented. The parameters of the valence electron wavefunction and asymptotically precise exchange interaction potential are calculated. The role of rotational transitions is discussed. The vibrational excitation transfer is taken into account and the coupled equations, describing the charge exchange process between diatomics are solved both in limiting cases and numerically. The total charge transfer cross sections are calculated for many diatomic systems and the results are compared with experimental data. (author)

  9. Diatoms on earth, comets, Europa and in interstellar space

    Science.gov (United States)

    Hoover, R. B.; Hoover, M. J.; Hoyle, F.; Wickramasinghe, N. C.; Al-Mufti, S.

    1986-01-01

    There exists a close correspondence between the measured infrared properties of diatoms and the infrared spectrum of interstellar dust as observed in the Trapezium nebula and toward the galactic center source GC-IRS 7. Diatoms and bacteria also exhibit an absorbance peak near 2200 A, which is found to agree with the observed ultraviolet absorbance properties of interstellar grains. The observational data are reviewed, and the known properties of diatoms and bacteria are considered. It is suggested that these characteristics are consistent with the concept of a cosmic microbiological system in which these or similar microorganisms might exist on comets, Europa and in interstellar space.

  10. Bounded variation and around

    CERN Document Server

    Appell, Jürgen; Merentes Díaz, Nelson José

    2013-01-01

    This monographis a self-contained exposition of the definition and properties of functionsof bounded variation and their various generalizations; the analytical properties of nonlinear composition operators in spaces of such functions; applications to Fourier analysis, nonlinear integral equations, and boundary value problems. The book is written for non-specialists. Every chapter closes with a list of exercises and open problems.

  11. Born Level Bound States

    Science.gov (United States)

    Hoyer, Paul

    2017-05-01

    Bound state poles in the S-matrix of perturbative QED are generated by the divergence of the expansion in α . The perturbative corrections are necessarily singular when expanding around free, {O}( α ^0 ) in and out states that have no overlap with finite-sized atomic wave functions. Nevertheless, measurables such as binding energies do have well-behaved expansions in powers of α (and log α ). It is desirable to formulate the concept of "lowest order" for gauge theory bound states such that higher order corrections vanish in the α → 0 limit. This may allow to determine a lowest order term for QCD hadrons which incorporates essential features such as confinement and chiral symmetry breaking, and thus can serve as the starting point of a useful perturbative expansion. I discuss a "Born" (no loop, lowest order in \\hbar ) approximation. Born level states are bound by gauge fields which satisfy the classical field equations. Gauss' law determines a distinct field A^0({\\varvec{x}}) for each instantaneous position of the charges. A Poincaré covariant boundary condition for the gluon field leads to a confining potential for q\\bar{q} and qqq states. In frames where the bound state is in motion the classical gauge field is obtained by a Lorentz boost of the rest frame field.

  12. Bounded Brownian Motion

    Directory of Open Access Journals (Sweden)

    Peter Carr

    2017-11-01

    Full Text Available Diffusions are widely used in finance due to their tractability. Driftless diffusions are needed to describe ratios of asset prices under a martingale measure. We provide a simple example of a tractable driftless diffusion which also has a bounded state space.

  13. A Zeeman slower for diatomic molecules

    Science.gov (United States)

    Petzold, M.; Kaebert, P.; Gersema, P.; Siercke, M.; Ospelkaus, S.

    2018-04-01

    We present a novel slowing scheme for beams of laser-coolable diatomic molecules reminiscent of Zeeman slowing of atomic beams. The scheme results in efficient compression of the one-dimensional velocity distribution to velocities trappable by magnetic or magneto-optical traps. We experimentally demonstrate our method in an atomic testbed and show an enhancement of flux below v = 35 m s‑1 by a factor of ≈20 compared to white light slowing. 3D Monte Carlo simulations performed to model the experiment show excellent agreement. We apply the same simulations to the prototype molecule 88Sr19F and expect 15% of the initial flux to be continuously compressed in a narrow velocity window at around 10 m s‑1. This is the first experimentally shown continuous and dissipative slowing technique in molecule-like level structures, promising to provide the missing link for the preparation of large ultracold molecular ensembles.

  14. Mechanisms of carbon dioxide acquisition and CO2 sensing in marine diatoms: a gateway to carbon metabolism.

    Science.gov (United States)

    Matsuda, Yusuke; Hopkinson, Brian M; Nakajima, Kensuke; Dupont, Christopher L; Tsuji, Yoshinori

    2017-09-05

    Diatoms are one of the most successful marine eukaryotic algal groups, responsible for up to 20% of the annual global CO 2 fixation. The evolution of a CO 2 -concentrating mechanism (CCM) allowed diatoms to overcome a number of serious constraints on photosynthesis in the marine environment, particularly low [CO 2 ] aq in seawater relative to concentrations required by the CO 2 fixing enzyme, ribulose-1,5-bisphosphate carboxylase/oxygenase (RubisCO), which is partly due to the slow diffusion rate of CO 2 in water and a limited CO 2 formation rate from [Formula: see text] in seawater. Diatoms use two alternative strategies to take up dissolved inorganic carbon (DIC) from the environment: one primarily relies on the direct uptake of [Formula: see text] through plasma-membrane type solute carrier (SLC) 4 family [Formula: see text] transporters and the other is more reliant on passive diffusion of CO 2 formed by an external carbonic anhydrase (CA). Bicarbonate taken up into the cytoplasm is most likely then actively transported into the chloroplast stroma by SLC4-type transporters on the chloroplast membrane system. Bicarbonate in the stroma is converted into CO 2 only in close proximity to RubisCO preventing unnecessary CO 2 leakage. CAs play significant roles in mobilizing DIC as it is progressively moved towards the site of fixation. However, the evolutionary types and subcellular locations of CAs are not conserved between different diatoms, strongly suggesting that this DIC mobilization strategy likely evolved multiple times with different origins. By contrast, the recent discovery of the thylakoid luminal θ-CA indicates that the strategy to supply CO 2 to RubisCO in the pyrenoid may be very similar to that of green algae, and strongly suggests convergent coevolution in CCM function of the thylakoid lumen not only among diatoms but among eukaryotic algae in general. In this review, both experimental and corresponding theoretical models of the diatom CCMs are

  15. Acidification counteracts negative effects of warming on diatom silicification

    KAUST Repository

    Coello-Camba, Alexandra

    2016-10-24

    Diatoms are a significant group contributing up to 40 % of annual primary production in the oceans. They have a special siliceous cell wall that, acting as a ballast, plays a key role in the sequestration of global carbon and silica. Diatoms dominate primary production in the Arctic Ocean, where global climate change is causing increases in water temperature and in the partial pressure of CO2 (pCO2). Here we show that as water temperature increases diatoms become stressed, grow to smaller sizes, and decrease their silicification rates. But at higher pCO2, as the pH of seawater decreases, silica incorporation rates are increased. In a future warmer Arctic ocean diatoms may have a competitive advantage under increased ocean acidification, as increased pCO2 counteracts the adverse effects of increasing temperature on silicification and buffers its consequences in the biogeochemical cycles of carbon and silica.

  16. Effect of Industrial Effluent on the Growth of Marine Diatom ...

    African Journals Online (AJOL)

    Michael Horsfall

    Effect of Industrial Effluent on the Growth of Marine Diatom, Chaetoceros simplex (Ostenfeld, 1901). P. KARTHIKEYAN*, S. JAYASUDHA, P. SAMPATHKUMAR, K. MANIMARAN,. C. SANTHOSHKUMAR, S. ASHOKKUMAR AND V. ASHOKPRABU. CAS in Marine Biology, Faculty of Marine Sciences, Annamalai University,.

  17. Modified Ribose Receptor Response in Isolated Diatom Frustules

    Energy Technology Data Exchange (ETDEWEB)

    Fairbanks, Carly R.

    2011-08-26

    Diatoms are a distinctive group of microalgae with the unique ability to produce a highly-ordered biosilica matrix, known as the frustule. Diatoms hold significant potential in the biotechnology field as a silica scaffold for embedding proteins. In this study, we analyzed the funtionalization of biosilica with a receptor complex through genetic modification of the diatom, Thalassiosira pseudonana. Through the use of Foerster Resonance Energy Transfer (FRET), the receptor was shown to remain active in transformed frustules after the inner cellular contents were removed. In addition to protein functionality, growth conditions for T. pseudonana were optimized. Untransformed cultures receiving aeration grew more rapidly than stagnant untransformed cultures. Surprisingly, transformed cultures grew more quickly than untransformed cultures. This study demonstrates isolated diatom frustules provide an effective scaffold for embedded receptor complexes. Through this research, we provide the groundwork for the development of new biosensors for use in diagnostics and environmental remediation.

  18. Abundance of bacterial and diatom fouling on various surfaces

    Digital Repository Service at National Institute of Oceanography (India)

    PrabhaDevi

    Abundance of bacterial and diatom fouling on aluminium, fibreglass and stainless steel were studied from Dona Paula waters of the Zuari Estuary. Both these forms were reversibly attached in large numbers to surfaces during the initial 24 hr...

  19. Diatoms - nature materials with great potential for bioapplications

    Directory of Open Access Journals (Sweden)

    Medarević Đorđe P.

    2016-01-01

    Full Text Available Diatoms are widespread unicellular photosynthetic algae that produce unique highly ordered siliceous cell wall, called frustule. Micro- to nanoporous structure with high surface area that can be easily modified, high mechanical resistance, unique optical features (light focusing and luminescence and biocompatibility make diatom frustule as a suitable raw material for the development of devices such as bio- and gas sensors, microfluidic particle sorting devices, supercapacitors, batteries, solar cells, electroluminescent devices and drug delivery systems. Their wide availability in the form of fossil remains (diatomite or diatomaceous earth as well as easy cultivation in the artificial conditions further supports use of diatoms in many different fields of application. This review focused on the recent achievements in the diatom bioapplications such as drug delivery, biomolecules immobilization, bio- and gas sensing, since great progress was made in this field over the last several years.

  20. Size Dependent Heat Conduction in One-Dimensional Diatomic Lattices

    International Nuclear Information System (INIS)

    Shah, Tejal N.; Gajjar, P.N.

    2016-01-01

    We study the size dependency of heat conduction in one-dimensional diatomic FPU-β lattices and establish that for low dimensional material, contribution from optical phonons is found more effective to the thermal conductivity and enhance heat transport in the thermodynamic limit N → ∞. For the finite size, thermal conductivity of 1D diatomic lattice is found to be lower than 1D monoatomic chain of the same size made up of the constituent particle of the diatomic chain. For the present 1D diatomic chain, obtained value of power divergent exponent of thermal conductivity 0.428±0.001 and diffusion exponent 1.2723 lead to the conclusions that increase in the system size, increases the thermal conductivity and existence of anomalous energy diffusion. Existing numerical data supports our findings. (paper)

  1. Cryopreservation studies on the marine diatom Navicula subinflata Grun

    Digital Repository Service at National Institute of Oceanography (India)

    Redekar, P.D.; Wagh, A.B.

    Very little work has been done on marine unicellular algae regarding cryopreservation. The present work was, therefore, undertaken to study the effect of different cryoprotectants and cryopreservation on the growth of marine diatom Navicula...

  2. Copepod reproduction is unaffected by diatom aldehydes or lipid composition

    DEFF Research Database (Denmark)

    Dutz, Jörg; Koski, Marja; Jonasdottir, Sigrun

    2008-01-01

    ). Egg hatching rates decreased after 4 d in all diatom treatments, irrespective of the egg production rate and without any relationship to diatom aldehyde production. Similarly, no evidence was found that diatoms are per se nutritionally inferior to nondiatom food. The lack of a distinct mechanism......We investigated whether reduced reproductive success of copepods fed with diatoms was related to nutritional imbalances with regard to essential lipids or to the production of inhibitory aldehydes. In 10-d laboratory experiments, feeding, egg production, egg hatching success, and fecal pellet...... at high rates, they yielded a variable egg production response in copepods, ranging from high egg production in four species (two strains of Thalassiosira rotula, Chaetoceros affinis, and Thalassiosira weissflogii) to low egg production in two species (Leptocylindricus danicus and Skeletonema costatum...

  3. Production of silver nanoparticles by the diatom Phaeodactylum tricornutum

    Science.gov (United States)

    Wishkerman, Asher; Arad (Malis), Shoshana

    2017-05-01

    Diatoms (Bacillariophyceae) are the most species-rich group of algae, they are single-celled characterized by a silicified cell wall called a frustule. Diatoms are diverse in shape with many distinct features like raphe and fultoportulae. The diatom cell wall morphology and its hierarchy structure make it a unique unicellular organism for nanotechnology research and applications. Diatom cells are a promising system for green synthesis of nanomaterials like metallic nanoparticles (NPs), nanostructured polymers and other nanomaterials. The production of NPs is achieved today by using methods like attrition or pyrolysis. The cost and the toxic substances often used in these common methods of NPs synthesis limit their applications. Therefore, NPs biosynthesis by diatom cultures, which can be done at ambient CO2 concentrations, temperature and pressure, offers a sustainable alternative solution. In this work, we examined the formation of silver NPs (AgNPs) by the diatom Phaeodactylum tricornutum cultivated at 25°C for a period of 8 days. Using this approach, diatom cultures were either grown throughout the duration of the experiment in an artificial seawater (ASW)-f/2 medium enriched with 1 ppm Ag+ or grown in an ASW-f/2 medium where similar silver ion concentrations were added on experimental day 4. We found that 1 ppm Ag+ reduces the P. tricornutum growth by up to 50% as compared with the control. Moreover, scanning electron microscopy (SEM) in combination with Energy-Dispersive X-ray (EDX) showed the presence of AgNPs nanoparticles with different sizes and chemical composition associated with the diatom frustules and extracellular polymeric substances.

  4. Diversity and Evolutionary History of Iron Metabolism Genes in Diatoms.

    Directory of Open Access Journals (Sweden)

    Ryan D Groussman

    Full Text Available Ferroproteins arose early in Earth's history, prior to the emergence of oxygenic photosynthesis and the subsequent reduction of bioavailable iron. Today, iron availability limits primary productivity in about 30% of the world's oceans. Diatoms, responsible for nearly half of oceanic primary production, have evolved molecular strategies for coping with variable iron concentrations. Our understanding of the evolutionary breadth of these strategies has been restricted by the limited number of species for which molecular sequence data is available. To uncover the diversity of strategies marine diatoms employ to meet cellular iron demands, we analyzed 367 newly released marine microbial eukaryotic transcriptomes, which include 47 diatom species. We focused on genes encoding proteins previously identified as having a role in iron management: iron uptake (high-affinity ferric reductase, multi-copper oxidase, and Fe(III permease; iron storage (ferritin; iron-induced protein substitutions (flavodoxin/ferredoxin, and plastocyanin/cytochrome c6 and defense against reactive oxygen species (superoxide dismutases. Homologs encoding the high-affinity iron uptake system components were detected across the four diatom Classes suggesting an ancient origin for this pathway. Ferritin transcripts were also detected in all Classes, revealing a more widespread utilization of ferritin throughout diatoms than previously recognized. Flavodoxin and plastocyanin transcripts indicate possible alternative redox metal strategies. Predicted localization signals for ferredoxin identify multiple examples of gene transfer from the plastid to the nuclear genome. Transcripts encoding four superoxide dismutase metalloforms were detected, including a putative nickel-coordinating isozyme. Taken together, our results suggest that the majority of iron metabolism genes in diatoms appear to be vertically inherited with functional diversity achieved via possible neofunctionalization of

  5. Diversity and Evolutionary History of Iron Metabolism Genes in Diatoms.

    Science.gov (United States)

    Groussman, Ryan D; Parker, Micaela S; Armbrust, E Virginia

    2015-01-01

    Ferroproteins arose early in Earth's history, prior to the emergence of oxygenic photosynthesis and the subsequent reduction of bioavailable iron. Today, iron availability limits primary productivity in about 30% of the world's oceans. Diatoms, responsible for nearly half of oceanic primary production, have evolved molecular strategies for coping with variable iron concentrations. Our understanding of the evolutionary breadth of these strategies has been restricted by the limited number of species for which molecular sequence data is available. To uncover the diversity of strategies marine diatoms employ to meet cellular iron demands, we analyzed 367 newly released marine microbial eukaryotic transcriptomes, which include 47 diatom species. We focused on genes encoding proteins previously identified as having a role in iron management: iron uptake (high-affinity ferric reductase, multi-copper oxidase, and Fe(III) permease); iron storage (ferritin); iron-induced protein substitutions (flavodoxin/ferredoxin, and plastocyanin/cytochrome c6) and defense against reactive oxygen species (superoxide dismutases). Homologs encoding the high-affinity iron uptake system components were detected across the four diatom Classes suggesting an ancient origin for this pathway. Ferritin transcripts were also detected in all Classes, revealing a more widespread utilization of ferritin throughout diatoms than previously recognized. Flavodoxin and plastocyanin transcripts indicate possible alternative redox metal strategies. Predicted localization signals for ferredoxin identify multiple examples of gene transfer from the plastid to the nuclear genome. Transcripts encoding four superoxide dismutase metalloforms were detected, including a putative nickel-coordinating isozyme. Taken together, our results suggest that the majority of iron metabolism genes in diatoms appear to be vertically inherited with functional diversity achieved via possible neofunctionalization of paralogs. This

  6. Radiational and energetic characteristics of diatomic molecules (data base)

    International Nuclear Information System (INIS)

    Kuznetsova, L.A.; Pazyuk, E.A.; Stolyarov, A.V.

    1993-01-01

    Data base on radiational and energetic characteristics of diatomic molecules was created. The base consists of two parts: reference system and recommended data system. The reference system contains the information about studies of radiational and energetic parameters of more than 1500 electronic states and 1700 electron transfers for ∼ 350 diatomic molecules and their ions. The base bibliography includes ∼ 3000 publications. 11 refs., 1 figs

  7. Live diatoms as indicators of urban stormwater runoff.

    Science.gov (United States)

    Gillett, Nadia D; Oudsema, Maggie E; Steinman, Alan D

    2017-01-01

    Diatom bioassessment of streams/rivers does not distinguish between live (cells with intact chloroplasts) and dead (empty cells) individuals, even though most diatom samples collected from the field will be composed of a mixture of both. This study aimed to evaluate whether percentage of live diatoms (PLD), live diatom density and chlorophyll a, and diatom species compositions can be used as indicators of hydrologic disturbance in an urban stream. We deployed artificial substrates on a monthly basis and collected periphyton samples weekly over the course of one calendar year (n = 182) in three tributaries of urbanized Ruddiman Creek (Michigan, USA). We also collected samples before and after six major storm events (>0.5 cm rain). We found no temporal patterns in PLD (Mann-Kendall test p > 0.05) or species composition (non-metric multidimensional scaling (NMDS) ordination), which may be explained by a diatom composition already tolerant to frequent disturbance. There was no difference in PLD before and after storm events, which might partially be explained by their disturbance resistance due to different assemblage ages (1, 2, and 4 weeks old) before the storms. High flow had differential effects on diatom species; loosely attached Navicula and Nitzschia species were more easily removed compared to stalk-forming Gomphonema parvulum. The most important environmental variable that was found to affect live diatom density and chlorophyll was stream width, which has an indirect effect (as a measure of discharge) on periphyton assemblages. In conclusion, PLD was found to be unsuitable metric for assessing stormwater runoff in urban streams where periphyton may not have enough time to form mature communities.

  8. Resonant inelastic collisions of electrons with diatomic molecules

    International Nuclear Information System (INIS)

    Houfek, Karel

    2012-01-01

    In this contribution we give a review of applications of the nonlocal resonance theory which has been successfully used for treating the nuclear dynamics of low-energy electron collisions with diatomic molecules over several decades. We give examples and brief explanations of various structures observed in the cross sections of vibrational excitation and dissociative electron attachment to diatomic molecules such as threshold peaks, boomerang oscillations below the dissociative attachment threshold, or outer-well resonances.

  9. Tryblionella persuadens comb. nov. (Bacillariaceae, Diatomeae): new observations on frustule morphology of a seldom recorded diatom.

    Science.gov (United States)

    Cavalcante, Kaoli P; Tremarin, Priscila I; Freire, Eduardo G; Ludwig, Thelma A V

    2013-01-01

    The species originally described from brackish waters of the Venetian Lagoon as Nitzschia persuadens is a diatom rarely cited in the literature since its proposition and it is here recorded for the first time in a freshwater environment in South America. Morphological features of this species, such valve slightly panduriform, with a longitudinal straight fold of the valve face, poroidal areolae, and strongly eccentric raphe system clearly assign this species to Tryblionella, and the transfer was made. Here we present new observations on the frustule morphology and comparisons with related species. Light and scanning electron microscopy data of Tryblionella persuadens comb. nov. from Cachoeira River, Northeastern Brazil are documented.

  10. Learning within bounds and dream sleep

    Science.gov (United States)

    Geszti, T.; Pazmandi, F.

    1987-12-01

    In a bounded-synapses version of Hopfield's model (1984) for neural networks the quasienergy of a given memory, which is approximately equal to the depth of the corresponding energy well is calculated exactly by treating the change of a synaptic strength on learning as a random walk within bounds. Attractors corresponding to stored memories are found to be considerably flattened before serious retrieval errors arise. This allows dream sleep to be interpreted as random recall and relearning of fresh strong memories, in order to stack them on top of weak incidental memory imprints of a day.

  11. Bounded Tamper Resilience

    DEFF Research Database (Denmark)

    Damgård, Ivan Bjerre; Faust, Sebastian; Mukherjee, Pratyay

    2013-01-01

    -free information) which can be used to refresh the secret key. We believe that bounded tampering is a meaningful and interesting alternative to avoid known impossibility results and can provide important insights into the security of existing standard cryptographic schemes.......Related key attacks (RKAs) are powerful cryptanalytic attacks where an adversary can change the secret key and observe the effect of such changes at the output. The state of the art in RKA security protects against an a-priori unbounded number of certain algebraic induced key relations, e.......g., affine functions or polynomials of bounded degree. In this work, we show that it is possible to go beyond the algebraic barrier and achieve security against arbitrary key relations, by restricting the number of tampering queries the adversary is allowed to ask for. The latter restriction is necessary...

  12. Developing diatoms for value-added products: challenges and opportunities.

    Science.gov (United States)

    Fu, Weiqi; Wichuk, Kristine; Brynjólfsson, Sigurður

    2015-12-25

    As a major primary producer in marine environments, diatoms have been considered as promising feedstocks for their applications in functional foods, bioactive pharmaceuticals, and cosmetics. This review focuses on the biotechnology potential of diatoms for value-added products like carotenoids. The impact of abiotic environmental stresses, such as intensity and quality of incident light, nutrient deficiency and silicon depletion, on diatoms has been examined to determine key factors that affect the growth performance and the accumulation of valuable compounds. Previous studies suggested that adaptive evolution could be an efficient method to improve the diatom productivity of valuable compounds. Light emitting diode (LED)-based photobioreactors were introduced and proposed as a promising new technology for producing quality products from diatoms. Currently available molecular biology tools were also summarized and discussed in relation to their application in the production of carotenoids and other valuable products. Taken together, systems biology and synthetic biology approaches have the potential to address the challenges faced while working toward the industrial application of diatoms. Copyright © 2015 Elsevier B.V. All rights reserved.

  13. Growth form defines physiological photoprotective capacity in intertidal benthic diatoms.

    Science.gov (United States)

    Barnett, Alexandre; Méléder, Vona; Blommaert, Lander; Lepetit, Bernard; Gaudin, Pierre; Vyverman, Wim; Sabbe, Koen; Dupuy, Christine; Lavaud, Johann

    2015-01-01

    In intertidal marine sediments, characterized by rapidly fluctuating and often extreme light conditions, primary production is frequently dominated by diatoms. We performed a comparative analysis of photophysiological traits in 15 marine benthic diatom species belonging to the four major morphological growth forms (epipelon (EPL), motile epipsammon (EPM-M) and non-motile epipsammon (EPM-NM) and tychoplankton (TYCHO)) found in these sediments. Our analyses revealed a clear relationship between growth form and photoprotective capacity, and identified fast regulatory physiological photoprotective traits (that is, non-photochemical quenching (NPQ) and the xanthophyll cycle (XC)) as key traits defining the functional light response of these diatoms. EPM-NM and motile EPL showed the highest and lowest NPQ, respectively, with EPM-M showing intermediate values. Like EPL, TYCHO had low NPQ, irrespective of whether they were grown in benthic or planktonic conditions, reflecting an adaptation to a low light environment. Our results thus provide the first experimental evidence for the existence of a trade-off between behavioural (motility) and physiological photoprotective mechanisms (NPQ and the XC) in the four major intertidal benthic diatoms growth forms using unialgal cultures. Remarkably, although motility is restricted to the raphid pennate diatom clade, raphid pennate species, which have adopted a non-motile epipsammic or a tychoplanktonic life style, display the physiological photoprotective response typical of these growth forms. This observation underscores the importance of growth form and not phylogenetic relatedness as the prime determinant shaping the physiological photoprotective capacity of benthic diatoms.

  14. [Diatoms Distribution in Ningbo Three-river Watershed during Summer].

    Science.gov (United States)

    Cai, H G; Ying, J; Ni, Z H; Lan, P; Zhang, Y Y; Yu, R J; Pang, H B; Ye, C L; Wei, D M

    2016-12-01

    To explore the species, quantity and distribution of diatoms in Ningbo three-river watershed during summer and to provide scientific basis for forensic examination of drowning cases in the waters of Ningbo. Water samples were collected in July and August of 2015. Fourteen water sampling points were selected from the Yao River, the Fenghua River and the Yong River. The morphological features of diatom species and dominant diatoms were distinguished by microscope. A total of 16 species of diatoms were detected in the Yao River, the Fenghua River and the Yong River. Melosira was the dominant species in the Yao River, and the quantity and richness were higher than in other rivers. The richness of Cyclotella in the Yong River was higher than in other rivers. The richness of Pinnularia and Licmophora were higher in the Fenghua River than in the Yao River and the Yong River. The species and proportion of diatom is different in each river. Database of the species and relative composition for the diatoms in corresponding river is established, which may provide data support for forensic examination of drowning cases in Ningbo three-river watershed. Copyright© by the Editorial Department of Journal of Forensic Medicine

  15. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum.

    Science.gov (United States)

    Siaut, Magali; Heijde, Marc; Mangogna, Manuela; Montsant, Anton; Coesel, Sacha; Allen, Andrew; Manfredonia, Alessandro; Falciatore, Angela; Bowler, Chris

    2007-12-30

    Research into diatom biology has now entered the post-genomics era, following the recent completion of the Thalassiosira pseudonana and Phaeodactylum tricornutum whole genome sequences and the establishment of Expressed Sequence Tag (EST) databases. The thorough exploitation of these resources will require the development of molecular tools to analyze and modulate the function of diatom genes in vivo. Towards this objective, we report here the identification of several reference genes that can be used as internal standards for gene expression studies by quantitative real-time PCR (qRT-PCR) in P. tricornutum cells grown over a diel cycle. In addition, we describe a series of diatom expression vectors based on Invitrogen Gateway technology for high-throughput protein tagging and overexpression studies in P. tricornutum. We demonstrate the utility of the diatom Destination vectors for determining the subcellular localization of a protein of interest and for immunodetection. The availability of these new resources significantly enriches the molecular toolbox for P. tricornutum and provides the diatom research community with well defined high-throughput methods for the analysis of diatom genes and proteins in vivo.

  16. Marine Polysaccharide Networks and Diatoms at the Nanometric Scale

    Directory of Open Access Journals (Sweden)

    Tea Mišić Radić

    2013-10-01

    Full Text Available Despite many advances in research on photosynthetic carbon fixation in marine diatoms, the biophysical and biochemical mechanisms of extracellular polysaccharide production remain significant challenges to be resolved at the molecular scale in order to proceed toward an understanding of their functions at the cellular level, as well as their interactions and fate in the ocean. This review covers studies of diatom extracellular polysaccharides using atomic force microscopy (AFM imaging and the quantification of physical forces. Following a brief summary of the basic principle of the AFM experiment and the first AFM studies of diatom extracellular polymeric substance (EPS, we focus on the detection of supramolecular structures in polysaccharide systems produced by marine diatoms. Extracellular polysaccharide fibrils, attached to the diatom cell wall or released into the surrounding seawater, form distinct supramolecular assemblies best described as gel networks. AFM makes characterization of the diatom polysaccharide networks at the micro and nanometric scales and a clear distinction between the self-assembly and self-organization of these complex systems in marine environments possible.

  17. Bound Exciton Complexes

    Science.gov (United States)

    Meyer, B. K.

    In the preceding chapter, we concentrated on the properties of free excitons. These free excitons may move through the sample and hit a trap, a nonradiative or a radiative recombination center. At low temperatures, the latter case gives rise to either deep center luminescence, mentioned in Sect. 7.1 and discussed in detail in Chap. 9, or to the luminescence of bound exciton complexes (BE or BEC). The chapter continues with the most prominent of these BECs, namely A-excitons bound to neutral donors. The next aspects are the more weakly BEs at ionized donors. The Sect. 7.4 treats the binding or localization energies of BEC from a theoretical point of view, while Sect. 7.5 is dedicated to excited states of BECs, which contain either holes from deeper valence bands or an envelope function with higher quantum numbers. The last section is devoted to donor-acceptor pair transitions. There is no section devoted specifically to excitons bound to neutral acceptors, because this topic is still partly controversially discussed. Instead, information on these A0X complexes is scattered over the whole chapter, however, with some special emphasis seen in Sects. 7.1, 7.4, and 7.5.

  18. Responses of aquatic organisms to metal pollution in a lowland river in Flanders: A comparison of diatoms and macroinvertebrates

    Energy Technology Data Exchange (ETDEWEB)

    Jonge, Maarten de [Department of Biology, Ecophysiology, Biochemistry and Toxicology Group, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)], E-mail: maarten.dejonge@ua.ac.be; Vijver, Bart van de [Department of Bryophytes and Thallophytes, National Botanic Garden of Belgium, Domein van Bouchout, 1860 Meise (Belgium); Blust, Ronny; Bervoets, Lieven [Department of Biology, Ecophysiology, Biochemistry and Toxicology Group, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp (Belgium)

    2008-12-15

    The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and

  19. Responses of aquatic organisms to metal pollution in a lowland river in Flanders: a comparison of diatoms and macroinvertebrates.

    Science.gov (United States)

    De Jonge, Maarten; Van de Vijver, Bart; Blust, Ronny; Bervoets, Lieven

    2008-12-15

    The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and

  20. Responses of aquatic organisms to metal pollution in a lowland river in Flanders: A comparison of diatoms and macroinvertebrates

    International Nuclear Information System (INIS)

    Jonge, Maarten de; Vijver, Bart van de; Blust, Ronny; Bervoets, Lieven

    2008-01-01

    The role of macroinvertebrates and diatoms as indicator for metal pollution was investigated by assessing both biota along a metal gradient in the Belgian river the Dommel. Macroinvertebrates and diatoms were sampled in summer and winter and physical-chemical characteristics of the water were measured at four different sample periods and related to sediment characteristics. Although metal concentrations, except cadmium, in the water nowhere exceeded water quality standards, high metal concentrations were measured in the sediment, indicating historical contamination of the Dommel. At the sites that were situated downstream of the pollution source, high levels of conductivity and chloride were measured in the water. Redundancy Analysis (RDA) indicated pH, phosphate and zinc as the significant environmental variables explaining each respectively 7.7%, 11.6% and 22.6% of the macroinvertebrate community composition. Two clusters could be separated, with Gammarus pulex, Leptocerus interruptus, Baetis rhodani and Cloeon dipterum associated with low zinc concentrations and Tubificidae, Asellus aquaticus, Erpobdella sp. and Chironomus thummi-plumosus associated with higher zinc concentrations. Ammonium (10.6%), conductivity (16.5%), chloride (11.4%) and zinc (5.9%) turned out to be significant variables explaining the diatom community structure. Based on physical-chemical differences and species composition, three different groups could be separated. With this Tabellaria flocculosa and Fragilaria capucina var. rumpens were associated with low metal concentrations, Gomphonema parvulum and Nitzschia palea with elevated concentrations and Eolimna minima and Sellaphora seminulum with high zinc concentrations. In conclusion, the diatom community best reflected the metal gradient. With regard to water quality indices, those based on macroinvertebrates best followed the metal pollution gradient and were most strongly correlated with physical-chemical variables of water and

  1. Paleoceanography of the Gulf of Alaska during the past 15,000 years: results from diatoms, silicoflagellates, and geochemistry

    Science.gov (United States)

    Barron, John A.; Bukry, David; Dean, Walter E.; Addison, Jason A.; Finney, Bruce

    2009-01-01

    High-resolution records of diatoms, silicoflagellates, and geochemistry covering the past 15,000 years were studied in three cores from the Gulf of Alaska (GOA). Core EW0408-85JC in an oceanic setting on the Kayak Slope displays a paleoceanographic record similar to that at several locations on the California margin during deglaciation. Biologic productivity as reconstructed using geochemical and microfossil proxies increased abruptly during the Bølling–Alleröd (Bø–Al) warm interval (14.7–12.9 cal ka), declined during the Younger Dryas (YD) cold interval (12.9 to 11.7 cal kyr BP), and rose again during the earliest Holocene. At this site, the record after ~ 11 cal kyr BP is dominated by oceanic diatoms and silicoflagellates, with geochemical proxies displaying more subtle variation. Cores EW0408-66JC in the Yakobi Sea Valley near Cross Sound and EW0408-11JC in the Gulf of Esquibel contain an expanded, composite record along the southeast Alaskan margin. Core 66JC contains a detailed record of the Bø–Al and YD. Diatoms and silicoflagellates indicate that coastal upwelling and biosiliceous productivity were strong during the Bø–Al but declined during the YD. Sea ice-related diatoms increased in abundance during the YD, indicating cooler, but less productive waters. The glacial to biogenic marine sediment transition in core 11JC occurs at 1280 cmbsf (centimeters below sea floor), probably representing rising sea level and deglaciation early in the Bø–Al. Freshwater and sea-ice related diatoms are common in the lower part of the core (Bø–Al and YD), but upwelling-related diatoms and silicoflagellates quickly increased in relative abundance up-core, dominating the record of the past 11,000 years. Low oxygen conditions in the bottom water as reconstructed using geochemical proxies (U and Mo concentration) were most intense between ~ 6.5 and 2.8 cal kyr BP, the beginning of which is coincident with increases in abundance of upwelling-related diatoms

  2. Yukawa Bound States and Their LHC Phenomenology

    Directory of Open Access Journals (Sweden)

    Enkhbat Tsedenbaljir

    2013-01-01

    Full Text Available We present the current status on the possible bound states of extra generation quarks. These include phenomenology and search strategy at the LHC. If chiral fourth-generation quarks do exist their strong Yukawa couplings, implied by current experimental lower bound on their masses, may lead to formation of bound states. Due to nearly degenerate 4G masses suggested by Precision Electroweak Test one can employ “heavy isospin” symmetry to classify possible spectrum. Among these states, the color-octet isosinglet vector ω 8 is the easiest to be produced at the LHC. The discovery potential and corresponding decay channels are covered in this paper. With possible light Higgs at ~125 GeV two-Higgs doublet version is briefly discussed.

  3. Environmental and Spatial Influences on Biogeography and Community Structure of Benthic Diatoms

    Science.gov (United States)

    Plante, C.; Hill-Spanik, K.; Lowry, J.

    2016-02-01

    Several theoretical and practical reasons suggest that benthic microalgae could be useful bioindicators. For instance, an ideal indicator species or community would be associated with a given habitat due to local physical conditions or biotic interactions (i.e., `environmental filtering'), not due to dispersal limitation. Due to their small size, immense abundances, and reliance on passive dispersal, the popular notion about micro-organisms is that `Everything is everywhere, but, the environment selects' (Baas-Becking 1934). Although much recent research concerning planktonic bacteria and dispersal limitation has been conducted, very little in this regard is known about microeukaryotes, especially benthic microbes. The purpose of our study was to identify and compare spatial and environmental influences on benthic diatom community structure and biogeography. In summer 2015, sediment was sampled at various spatial scales from four barrier island beaches in South Carolina, USA, and high-throughput (Ion Torrent) DNA sequencing was used to characterize diatom assemblages. ANOSIM and principal coordinates analysis revealed that communities were statistically distinct on the four islands. Community dissimilarity was compared to both spatial distance and environmental differences to determine potential influences of these variables on community structure. We found that geographic distance had the strongest correlation with community similarity, with and without one anomalous location, while differences in temperature (air, water, and sediment), nutrients, organic matter, and turbidity also had significant but weaker relationships with community structure. Surprisingly, air temperature, which changes on very short time scales, appeared to be the environmental factor most strongly related to diatom species composition, potentially implicating some unmeasured variable (e.g., cloud cover). However, we also found that temperature and geographic distance were strongly

  4. Blog life: Entropy Bound

    Science.gov (United States)

    Steinberg, Peter

    2008-06-01

    Who is the blog written by? Peter Steinberg is a nuclear physicist at the Brookhaven National Laboratory in New York, US. He is acting project manager of the PHOBOS experiment, which used Brookhaven's Relativistic Heavy Ion Collider (RHIC) to search for unusual events produced during collisions between gold nuclei. He is also involved with the PHENIX experiment, which seeks to discover a new state of matter known as the quark-gluon plasma. In addition to his own blog Entropy Bound, Steinberg is currently blogging on a website that was set up last year to publicize the involvement of US scientists with the Large Hadron Collider (LHC) at CERN.

  5. Regularity of Bound States

    DEFF Research Database (Denmark)

    Faupin, Jeremy; Møller, Jacob Schach; Skibsted, Erik

    2011-01-01

    We study regularity of bound states pertaining to embedded eigenvalues of a self-adjoint operator H, with respect to an auxiliary operator A that is conjugate to H in the sense of Mourre. We work within the framework of singular Mourre theory which enables us to deal with confined massless Pauli–......–Fierz models, our primary example, and many-body AC-Stark Hamiltonians. In the simpler context of regular Mourre theory, our results boil down to an improvement of results obtained recently in [8, 9]....

  6. Synthesis of Ag nanoparticles using diatom cells for ammonia sensing

    Directory of Open Access Journals (Sweden)

    Lakhi Chetia

    2017-11-01

    Full Text Available Growth of silver nanoparticles through photo induced bioreduction mechanism on the surface of diatom cells, which is a kind of photosensitive fresh water organism containing hydrated amorphous silica structure, has been found to be a cost-effective, rapid, non-toxic, eco-friendly, photo-induced bottom-up process. This material shows broad absorbance in the visible light spectra. Light sensitive fucoxanthin pigment of diatoms that contain hydroxyl (−OH groups, play a vital role in the formation of silver cluster on the surface of diatom cells and its growth process. Involvement of the compounds and proteins of the diatoms which are responsible for reduction of metal ions and stabilization of the grown nanoparticles on diatom cells, are confirmed by FTIR analysis. Investigations are done to see if the synthesized samples acted as sensing material in the fabrication of a room temperature sensor of dissolved ammonia. With increase in ammonia concentration the visible light absorption peaks tend to higher intensity with blue shift due to the formation of [Ag(NH32]+ complexes causing repulsion between the Ag nanoparticles and consequently lead to the formation of smaller Ag nanoparticles. The intensity of absorption of the as-synthesized material is linearly correlated with the concentration of dissolved ammonia as observed from 0 to 100ppm. The use of naturally occurring diatoms for Ag nanoparticles synthesis has the benefits of amenability for large-scale easy production. Also the experimental findings indicate that the as-synthesized material can act as fast and reliable sensing material. Keywords: Diatoms, Fucoxanthin, Silver nanoparticles, Ammonia sensor

  7. Using biodiversity of diatoms to identify hydrological connectivity in the hillslope-riparian zone-stream system

    Science.gov (United States)

    Wetzel, C. E.; Martínez-Carreras, N.; Ector, L.; Hlubikova, D.; Frentress, J.; McDonnell, J. J.; Hoffmann, L.; Pfister, L.

    2012-04-01

    very intense rainfall events cause a single-tailed rather small rise of the hydrograph in the Weierbach. Mixing diagrams suggest a very brief and intense switch from groundwater to soil water contribution. Almost simultaneously to incoming precipitation, terrestrial diatom abundance increases to 20-30% inside the stream. Species composition was also seasonally structured. During winter season (November 2010 and January 2011 events) the diatom drift was characterized and dominated by colony forming species (e.g. Fragilaria nevadensis Linares-Cuesta & Sánchez-Castillo and Fragilariforma virescens (Ralfs) Williams & Round), while summer events were characterized by a large number of small aerophytic species (i.e. Chamaepinnularia evanida (Hustedt) Lange-Bertalot, Eolimna tantula (Hustedt) Lange-Bertalot, Navicula obsoleta Hustedt, Navicula parsura Hustedt and Stauroneis thermicola (Petersen) Lund). Chemical tracers suggest a substantial role of soil water contributions to storm hydrographs in the Weierbach, regardless of the season, with overland flow playing no prominent role at all. Meanwhile, terrestrial diatom abundance in drift samples strongly increases during precipitation events, suggesting a rapid onset of connectivity between the soil surface and the stream. We assume the terrestrial diatoms to be mobilized during precipitation and eventually flushed to the stream through a subsurface network of macropores in the shallow soils and cracks in the fractured and weathered schistose bedrock.

  8. Hydroecological Connections: Hyporheic Zone Weathering of Silicate Minerals Controls Diatom Biodiversity in Microbial Mats in Glacial Meltwater Streams of the McMurdo Dry Valleys, Antarctica

    Science.gov (United States)

    McKnight, D. M.; Dyson, I.; Esposito, R. M.; Gooseff, M. N.; Lyons, W. B.; Welch, K. A.

    2015-12-01

    The McMurdo Dry Valleys of Antarctica is comprised of alpine and terminal glaciers, large expanses of patterned ground, and ice-covered lakes in the valley floors, which are linked by glacial meltwater streams that flow during the austral summer. As part of the McMurdo Dry Valleys Long-Term Ecological research project, we have observed stream ecosystem response to a sustained 18 year cool period with low flows, which has been recently interrupted by three "flood events" during sunny, warm summers. Many of these streams contain thriving microbial mats comprised of cyanobacteria and endemic diatoms, the most diverse group of eukaryotic organisms in the valleys. Of the 45 diatom taxa, some common taxa are heavily silicified, Hantzschia amphioxys f. muelleri, while others are only lightly silicified. By comparing diatom communities in streams which flow every summer with those in streams that only flow during flood events, we found that hydrologic flow regime acts as a strong environmental filter on diatom community composition. Following the first flood event in 2001/02, mat biomass was two-fold lower due to scouring and recovered over several years, with lesser declines following the subsequent floods. In the longer streams, the diatom community composition remained stable through the flood events, whereas in two of the shorter streams, Green and Bowles Creeks, the diatom community shifted after the first flood event to a greater abundance of lightly silicified taxa. Water quality monitoring and reactive transport modeling have shown that rapid weathering of silicate minerals in the hyporheic zone accounts for the downstream increases in Si concentration which are observed in the longer streams. One mechanism driving this greater abundance of lightly silicified diatoms in shorter streams could be the greater dilution of the Si supply from hyporheic weathering in shorter streams under high flows. Given that the stream diatom community is well preserved in the 40

  9. Atom collisions in a strong electromagnetic field

    International Nuclear Information System (INIS)

    Smirnov, V.S.; Chaplik, A.V.

    1976-01-01

    It is shown that the long-range part of interatomic interaction is considerably altered in a strong electromagnetic field. Instead of the van der Waals law the potential asymptote can best be described by a dipole-dipole R -3 law. Impact broadening and the line shift in a strong nonresonant field are calculated. The possibility of bound states of two atoms being formed in a strong light field is discussed

  10. The evolution of diatoms and their biogeochemical functions.

    Science.gov (United States)

    Benoiston, Anne-Sophie; Ibarbalz, Federico M; Bittner, Lucie; Guidi, Lionel; Jahn, Oliver; Dutkiewicz, Stephanie; Bowler, Chris

    2017-09-05

    In contemporary oceans diatoms are an important group of eukaryotic phytoplankton that typically dominate in upwelling regions and at high latitudes. They also make significant contributions to sporadic blooms that often occur in springtime. Recent surveys have revealed global information about their abundance and diversity, as well as their contributions to biogeochemical cycles, both as primary producers of organic material and as conduits facilitating the export of carbon and silicon to the ocean interior. Sequencing of diatom genomes is revealing the evolutionary underpinnings of their ecological success by examination of their gene repertoires and the mechanisms they use to adapt to environmental changes. The rise of the diatoms over the last hundred million years is similarly being explored through analysis of microfossils and biomarkers that can be traced through geological time, as well as their contributions to seafloor sediments and fossil fuel reserves. The current review aims to synthesize current information about the evolution and biogeochemical functions of diatoms as they rose to prominence in the global ocean.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  11. Chitinase producing bacteria with direct algicidal activity on marine diatoms.

    Science.gov (United States)

    Li, Yi; Lei, Xueqian; Zhu, Hong; Zhang, Huajun; Guan, Chengwei; Chen, Zhangran; Zheng, Wei; Fu, Lijun; Zheng, Tianling

    2016-02-23

    Chitinase producing bacteria can involve extensively in nutrient cycling and energy flow in the aquatic environment through degradation and utilization of chitin. It is well known that diatoms cells are encased by box-like frustules composed of chitin. Thus the chitin containing of diatoms shall be a natural target of chitinase producing bacteria, however, the interaction between these two organismic groups has not been studied thus far. Therefore, in this study, the algicidal mechanism of one chitinase producing bacterium (strain LY03) on Thalassiosira pseudonana was investigated. The algicidal range and algicidal mode of strain LY03 were first studied, and then bacterial viability, chemotactic ability and direct interaction characteristic between bacteria and diatom were also confirmed. Finally, the characteristic of the intracellular algicidal substance was identified and the algicidal mechanism was determined whereby algicidal bacterial cells showed chemotaxis to algal cells, fastened themselves on algal cells with their flagella, and then produced chitinase to degrade algal cell walls, and eventually caused algal lysis and death. It is the first time to investigate the interaction between chitinase producing bacteria and diatoms, and this novel special interaction mode was confirmed in this study, which will be helpful in protection and utilization of diatoms resources.

  12. Recent advances in bound state quantum electrodynamics

    International Nuclear Information System (INIS)

    Brodsky, S.J.; Lepage, G.P.

    1977-06-01

    Recent developments are reviewed in four areas of computational quantum electrodynamics: a new relativistic two-body formalism equal in rigor to the Bethe-Salpeter formalism but with strong calculational advantages is discussed; recent work on the computation of the decay rate of bound systems (positronium in particular) is presented; limits on possible composite structure of leptons are discussed; a new multidimensional integration program ('VEGAS') suitable for higher order calculations is presented

  13. Development of diatom indicators of ecological conditons for streams of the western US

    Science.gov (United States)

    The species composition of benthic diatoms was related to environmental conditions in streams throughout the western US to develop diatom traits, indicators for assessment of biological condition and indicators for diagnosing stressors. We hypothesized that indicators based on s...

  14. Growth inhibition of periphytic diatoms by methanol extracts of sponges and holothurians

    Digital Repository Service at National Institute of Oceanography (India)

    Mokashe, S.S.; Garg, A; Anil, A; Wagh, A

    Crude methanol extracts of a holothurian Holothuria leucospilota, and two sponges Craniella sp. and Ircinia ramosa were tested for their inhibitory effects on the growth of two marine diatoms, Navicula subinflata and N. crucicula, by diatom plating...

  15. Effect of chlorination on the development of marine biofilms dominated by diatoms

    Digital Repository Service at National Institute of Oceanography (India)

    Patil, J.S.; Jagadeesan, V.

    and relaxation) technique was used to evaluate the effects of the biocide on diatom dominated biofilms. The efficiency of chlorine in removing diatoms from the developed biofilms increased with an increase in concentration and exposure time. The fluorescence...

  16. Diatom community dynamics in a tropical, monsoon-influenced environment: West coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    DeCosta, P.M.; Anil, A.C.

    Diatom communities are influenced by environmental perturbations, such as the monsoon system that impact the niche opportunities of species. To discern the influence of the monsoon system on diatom community structure, we sampled during two...

  17. Fouling diatom community with reference to substratum variability in tropical marine environment

    Digital Repository Service at National Institute of Oceanography (India)

    Mitbavkar, S.; Desai, D.V.; Khandeparker, L.; Anil, A.C.; Wagh, A.B.

    Diatoms are the earliest autotrophic colonizers and are responsible for the major input of energy in the form of reduced carbon to the surfce. However, information regarding the population structure of diatoms in theearly phases of fouling is very...

  18. Epipsammic diatoms in streams influenced by urban pollution, São Carlos, SP, Brazil

    Directory of Open Access Journals (Sweden)

    T. Bere

    Full Text Available Epipsammic diatoms have important implications for ecosystem processes in lotic environments. Most of the studies on benthic diatoms concentrate on epilithic diatoms and very little is known about epipsammic diatoms. The objective of this study was to assess epipsammic diatom communities in streams in relation to environmental conditions. Epipsammic diatoms and water quality sampling was done at 7 sites during summer base flow period (2008. Forward stepwise multiple regression and canonical correspondence analysis (CCA were used to determine environmental gradients along which species vary with physical and chemical variables. A total of 112 diatom species distributed among 44 genera were recorded. Altitude and the process of eutrophication played a significant role in structuring diatom communities in the study region.

  19. Palaeoecological reconstruction of Komořany Lake in Late Glacial based on diatom analysis

    OpenAIRE

    Poštulková, Anna

    2016-01-01

    Diatom analysis of basal part of profile PK-1-L contributes to multi-proxy research of former Lake Komořany. At this part of profile radiocarbon dating (dates sediments into Late Glacial and Early Holocene) and LOI (loss on ignition) had been conducted before, of which results have been utilized to more accurate interpretation of diatom analysis conclusions. Apart from diatom valves, presence of stomatocysts of Chrysophyceae has been observed. Having separated diatom valves from 32 sediment s...

  20. Computation of diatomic molecular spectra for selected transitions of aluminum monoxide, cyanide, diatomic carbon, and titanium monoxide

    International Nuclear Information System (INIS)

    Parigger, Christian G.; Woods, Alexander C.; Surmick, David M.; Gautam, Ghaneshwar; Witte, Michael J.; Hornkohl, James O.

    2015-01-01

    Laser ablation studies with laser-induced breakdown spectroscopy (LIBS) typically emphasize atomic species yet fingerprints from molecular species can occur subsequently or concurrently. In this work, selected molecular transitions of aluminum monixide (AlO), diatomic carbon (C 2 ), cyanide (CN), and titanium monoxide (TiO) are accurately computed. Line strength tables are used to describe the radiative transitions of diatomic molecules primarily in the visible, optical region. Details are elaborated of the computational procedure that allows one to utilize diatomic spectra as a predictive and as a diagnostic tool. In order to create a computed spectrum, the procedure requires information regarding the temperature of the diatomic transitions along with other input such as the spectral resolution. When combined with a fitting algorithm to optimize such parameters, this procedure is used to infer information from an experimentally obtained spectrum. Furthermore, the programs and data files are provided for LIBS investigations that also reveal AlO, C 2 , CN, and TiO diatomic spectra. - Highlights: • We present a program for fitting of molecular spectra. • This includes data base for AlO, C 2 , CN, and TiO. • We discuss the details of the program including fitting. • We show computed examples and reference current work

  1. Computation of diatomic molecular spectra for selected transitions of aluminum monoxide, cyanide, diatomic carbon, and titanium monoxide

    Energy Technology Data Exchange (ETDEWEB)

    Parigger, Christian G., E-mail: cparigge@tennessee.edu [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Woods, Alexander C.; Surmick, David M.; Gautam, Ghaneshwar; Witte, Michael J. [The University of Tennessee/University of Tennessee Space Institute, Center for Laser Applications, 411 B.H. Goethert Parkway, Tullahoma, TN 37388-9700 (United States); Hornkohl, James O. [Hornkohl Consulting, Tullahoma, TN 37388 (United States)

    2015-05-01

    Laser ablation studies with laser-induced breakdown spectroscopy (LIBS) typically emphasize atomic species yet fingerprints from molecular species can occur subsequently or concurrently. In this work, selected molecular transitions of aluminum monixide (AlO), diatomic carbon (C{sub 2}), cyanide (CN), and titanium monoxide (TiO) are accurately computed. Line strength tables are used to describe the radiative transitions of diatomic molecules primarily in the visible, optical region. Details are elaborated of the computational procedure that allows one to utilize diatomic spectra as a predictive and as a diagnostic tool. In order to create a computed spectrum, the procedure requires information regarding the temperature of the diatomic transitions along with other input such as the spectral resolution. When combined with a fitting algorithm to optimize such parameters, this procedure is used to infer information from an experimentally obtained spectrum. Furthermore, the programs and data files are provided for LIBS investigations that also reveal AlO, C{sub 2}, CN, and TiO diatomic spectra. - Highlights: • We present a program for fitting of molecular spectra. • This includes data base for AlO, C{sub 2}, CN, and TiO. • We discuss the details of the program including fitting. • We show computed examples and reference current work.

  2. Circular random motion in diatom gliding under isotropic conditions

    International Nuclear Information System (INIS)

    Gutiérrez-Medina, Braulio; Maldonado, Ana Iris Peña; Guerra, Andrés Jiménez; Rubio, Yadiralia Covarrubias; Meza, Jessica Viridiana García

    2014-01-01

    How cells migrate has been investigated primarily for the case of trajectories composed by joined straight segments. In contrast, little is known when cellular motion follows intrinsically curved paths. Here, we use time-lapse optical microscopy and automated trajectory tracking to investigate how individual cells of the diatom Nitzschia communis glide across surfaces under isotropic environmental conditions. We find a distinct kind of random motion, where trajectories are formed by circular arcs traveled at constant speed, alternated with random stoppages, direction reversals and changes in the orientation of the arcs. Analysis of experimental and computer-simulated trajectories show that the circular random motion of diatom gliding is not optimized for long-distance travel but rather for recurrent coverage of limited surface area. These results suggest that one main biological role for this type of diatom motility is to efficiently build the foundation of algal biofilms. (paper)

  3. Molecular Dynamics Simulation Study of Transport Properties of Diatomic Gases

    International Nuclear Information System (INIS)

    Lee, Song Hi; Kim, Ja Hun

    2014-01-01

    In this paper, we report thermodynamic and transport properties (diffusion coefficient, viscosity, and thermal conductivity) of diatomic gases (H 2 , N 2 , O 2 , and Cl 2 ) at 273.15 K and 1.00 atm by performing molecular dynamics simulations using Lennard-Jones intermolecular potential and modified Green-Kubo formulas. The results of self-diffusion coefficients of diatomic gases obtained from velocity auto-correlation functions by Green-Kubo relation are in good agreement with those obtained from mean square displacements by Einstein relation. While the results for viscosities of diatomic gases obtained from stress auto-correlation functions underestimate the experimental results, those for thermal conductivities obtained from heat flux autocorrelation functions overestimate the experimental data except H 2

  4. The coupled states approximation for scattering of two diatoms

    Science.gov (United States)

    Heil, T. G.; Kouri, D. J.; Green, S.

    1978-01-01

    The paper presents a detailed development of the coupled-states approximation for the general case of two colliding diatomic molecules. The high-energy limit of the exact Lippman-Schwinger equation is applied, and the analysis follows the Shimoni and Kouri (1977) treatment of atom-diatom collisions where the coupled rotor angular momentum and projection replace the single diatom angular momentum and projection. Parallels to the expression for the differential scattering amplitude, the opacity function, and the nondiagonality of the T matrix are reported. Symmetrized expressions and symmetrized coupled equations are derived. The present correctly labeled coupled-states theory is tested by comparing its calculated results with other computed results for three cases: H2-H2 collisions, ortho-para H2-H2 scattering, and H2-HCl.

  5. Studies on vibrational structure of diatomic molecular states

    International Nuclear Information System (INIS)

    Sun Weiguo; Hou Shilin; Ren Weiyi; Feng Hao

    2002-01-01

    Alternative expressions for vibrational and rotational spectrum constants and energies of diatomic molecular electronic states are suggested based on the perturbation theory. An algebraic method (AM) is proposed to generate converged full vibrational spectrum from limited energy data, and a potential variational method (PVM) is suggested to produce the vibrational force constants f n 's and rotational spectrum constants using the perturbation formulae and the AM vibrational constants. Applying this method to several diatomic electronic states, the calculation results show that: 1) the AM E υ max converges to correct molecular dissociation energy; 2) the AM not only reproduce the input energies, but also generate the E υ 's of high vibrational excited states which may be difficult to be obtained experimentally or theoretically; 3) the PVM vibrational force constants f n 's may be used to measure the relative chemical bond strength of different diatomic electronic states for a molecule quantitatively

  6. Sedimentation of phytoplankton during a diatom bloom : Rates and mechanisms

    DEFF Research Database (Denmark)

    Kiørboe, Thomas; Hansen, J.L.S.; Alldredge, A.L.

    1996-01-01

    velocities, settling of cells attached to marine snow aggregates formed from discarded larvacean houses or pteropod feeding webs, and packaging of cells into rapidly falling zooplankton fecal pellets. We quantified the relative significance of these different mechanisms during a diatom bloom in a temperate...... recorded in the water column (by divers) nor in sediment traps. The low coagulation rates were due to a very low 'stickiness' of suspended particles. The dominant diatom, Thalassiosira mendiolana, that accounted for up to 75% of the phytoplankton biomass, was not sticky at al, and did not turn sticky upon...... nutrient depletion in culture experiments. The low particle stickiness recorded may be related to low formation rates by diatoms of transparent exopolymeric particles (TEP), that occurred in low concentrations throughout the study period. Zooplankton grazing rate did not respond to the development...

  7. Comparing optical properties of different species of diatoms

    DEFF Research Database (Denmark)

    Maibohm, Christian; Friis, Søren Michael Mørk; Su, Y.

    2015-01-01

    Diatoms are single cellular algae encapsulate d in an external wall of micro-structured porous silica called the frustule. Diatoms are present in all water environments and contribute with 20-25 % of the global primary production of oxygen by photosynthesis. The appearance of the frustule is very...... species dependent with huge variety in size, shape, and micro- structure. We have experimentally investigated optical properties of frustules of several species of diatoms to further understand light harvesting properties together with commo n traits, effects and differences between the different...... frustules. We have observed, when incident light interacts w ith the micro-structured frustule it is multiple diffracted giving rise to wavelength dependent multiple focal points and other optical effects. Experimental results have been simulated and well confirmed by free space FFT propagation routine...

  8. An unusual early Holocene diatom event north of the Getz Ice Shelf (Amundsen Sea): Implications for West Antarctic Ice Sheet development

    Science.gov (United States)

    Esper, O.; Gersonde, R.; Hillenbrand, C.; Kuhn, G.; Smith, J.

    2011-12-01

    Modern global change affects not only the polar north but also, and to increasing extent, the southern high latitudes, especially the Antarctic regions covered by the West Antarctic Ice Sheet (WAIS). Consequently, knowledge of the mechanisms controlling past WAIS dynamics and WAIS behaviour at the last deglaciation is critical to predict its development in a future warming world. Geological and palaeobiological information from major drainage areas of the WAIS, like the Amundsen Sea Embayment, shed light on the history of the WAIS glaciers. Sediment records obtained from a deep inner shelf basin north of Getz Ice Shelf document a deglacial warming in three phases. Above a glacial diamicton and a sediment package barren of microfossils that document sediment deposition by grounded ice and below an ice shelf or perennial sea ice cover (possibly fast ice), respectively, a sediment section with diatom assemblages dominated by sea ice taxa indicates ice shelf retreat and seasonal ice-free conditions. This conclusion is supported by diatom-based summer temperature reconstructions. The early retreat was followed by a phase, when exceptional diatom ooze was deposited around 12,500 cal. years B.P. [1]. Microscopical inspection of this ooze revealed excellent preservation of diatom frustules of the species Corethron pennatum together with vegetative Chaetoceros, thus an assemblage usually not preserved in the sedimentary record. Sediments succeeding this section contain diatom assemblages indicating rather constant Holocene cold water conditions with seasonal sea ice. The deposition of the diatom ooze can be related to changes in hydrographic conditions including strong advection of nutrients. However, sediment focussing in the partly steep inner shelf basins cannot be excluded as a factor enhancing the thickness of the ooze deposits. It is not only the presence of the diatom ooze but also the exceptional preservation and the species composition of the diatom assemblage

  9. Prevalence of diatom frustules in non-vegetarian foodstuffs and its implications in interpreting identification of diatom frustules in drowning cases.

    Science.gov (United States)

    Yen, Law Yen; Jayaprakash, P T

    2007-07-20

    Detection of diatom frustules in bone marrow (diatom test) is used for diagnosing ante-mortem drowning where the usual signs of drowning are not present in dead bodies recovered from water. However, controversies over the reliability of diatom test results are continuing. There have been indications on the possibilities of diatoms entering into systemic circulation from atmospheric air, food and drink. While diatoms have been demonstrated in the gut content of edible marine forms such as shrimps and clams, the present study, for the first time, provides empirical evidence on the prevalence as well as abundance of diatom frustules in the samples of cooked non-vegetarian foodstuffs that impend human consumption in Kelantan, Malaysia. It is found that 50 g each of cleaned and cooked prawns and of clams impending human consumption contain about 8360 and 29,054 diatom frustules, respectively. A person accustomed to prawn and clam food would be ingesting an estimated 2 million diatoms in a single year. Considering the suggestion that detection of five diatom frustules in 10 g of bone marrow would suffice for concluding drowning as mode of death, and the fact that there is yet no proof that diatom frustules do not enter into the human systemic circulation through the digestive tract, the estimated number of diatom frustules routinely ingested acquires significance since entry of a few of such ingested frustules into the systemic circulation can lead to false positive test results. The findings of this research raise two important issues: first, population based routine food related diatom ingestion requires to be estimated, and, second, studies have to be initiated to categorically prove or disprove the possibility of entry of diatom frustules into the systemic circulation via the digestive tract.

  10. Moss-inhabiting diatom communities from Heard Island, sub-Antarctic

    NARCIS (Netherlands)

    VandeVijver, B.; Beyens, L.; Vincke, S.; Gremmen, N.J.M.

    2004-01-01

    In this paper, we list 192 diatom taxa, collected from bryophyte samples from Heard Island (52degrees05'S, 73degrees30'E). The Heard Island diatom flora shows a marked similarity to those of the Crozet and Kerguelen archipelagos, and is quite dissimilar to the moss-dwelling diatom flora of Macquarie

  11. Use of diatom indices to categorise impacts on and recovery of a ...

    African Journals Online (AJOL)

    The trophic status of the Ramsar-accredited Nyl River floodplain, which is stressed by sewage treatment effluents, and its ability to restore normal conditions, were assessed in 2014–2015 using diatoms as biological indicators. The Trophic diatom Index, Specific Pollution Sensitivity Index and the Generic diatom Index were ...

  12. The relationship between light intensity and nutrient uptake kinetics in six freshwater diatoms.

    Science.gov (United States)

    Shi, Pengling; Shen, Hong; Wang, Wenjing; Chen, Wenjie; Xie, Ping

    2015-08-01

    In order to find effective measures to control diatom blooms, a better understanding of the physiological characteristics of nutrient uptake in diatoms is needed. A study of P and Si-uptake kinetics for diatom species from two light regimes was conducted at low (LL), moderate (ML) and high light intensities (HL) (2, 25 and 80 μmol photons/(m(2)·sec)), respectively. The results showed that P uptake of diatoms was heavily influenced by historic light regimes. P affinity changed with growth and photosynthetic activity. The lowest half saturation constant for P uptake (Km(P)) was under HL for high-light adapted diatoms while the lowest half-saturation constant for low-light adapted diatoms was observed under LL. The Si half-saturation constant (Km(Si)) increased with increasing light intensities for pennate diatoms but decreased for centric diatoms. Diatom volumes were correlated with the maximum Si uptake rates (Vm(Si)) at HL and Km(Si) at ML and HL for six diatom species. Our results imply that when we assess the development of diatom blooms we should consider light intensity and cell volume in addition to ambient Si or P concentration. The relationship between light intensity and P-uptake suggests that we can find suitable methods to control diatom blooms on the basis of reducing phytoplankton activity of P-uptake and photosynthesis simultaneously. Copyright © 2015. Published by Elsevier B.V.

  13. A Guide to the Common Diatoms at Water Pollution Surveillance System Stations.

    Science.gov (United States)

    Weber, Cornelius I.

    This guide was developed by the United States Environmental Protection Agency (EPA) as a taxonomic reference for the identification of diatoms. The taxonomic information included consists of a generic key to the common genera of diatoms, a section illustrating 164 diatom species representing 43 common genera found at the Water Pollution…

  14. Methodological aspects of paleo-ecological diatom research in coastal areas of the Netherlands

    NARCIS (Netherlands)

    Vos, P.C.; Wolf, H. de

    2007-01-01

    A major problem in paleo-ecological research of diatoms in tidal environments is the distinction of autochthonous and allochthonous diatom valves. A new approach applying several diatom- and non-diatomrelated criteria is introduced in order to solve the autochthonous/allochthonous problem. A

  15. Diatoms in peat – dominant producers in a changing environment?

    DEFF Research Database (Denmark)

    Kokfelt, Ulla; Struyf, Eric; Randsalu, Linda

    2009-01-01

    to another, the old vegetation may be suppressed, die out or start to decay, and some time may pass until a new mire vegetation is fully established. Here, we demonstrate that diatoms may thrive during such transitions, creating isolated and shallow peat layers with significantly elevated biogenic silica...... content. Biogenic silica and other nutrients that would otherwise be lost during mineralization in runoff are in this way retained in the ecosystem. Our results imply that silica storage originating from diatoms can be expected to increase in today's rapidly changing boreal wetlands. The impacts...

  16. Quantification of diatoms in biofilms: Standardisation of methods

    Digital Repository Service at National Institute of Oceanography (India)

    Patil, J.S.; Anil, A.C.

    of diatoms during biofilm removal by both the techni- ques but maximum loss was encountered with ceramic scraping compared to nylon brushing (see Figure 2). The percentage loss using the latter decreased with the increase in diatom abundance in the biofilm, i...:319–335. MacLulich JH. 1986. Experimental evaluation of methods for sampling and assaying intertidal epilithic microalgae. Mar Ecol Prog Ser 34:275–280. Mayack LA, Sorraco RJ, Wilde EW, Pope DH. 1984. Compara- tive effectiveness of chlorine and chlorine dioxide...

  17. Biological monitoring of lotic ecosystems: the role of diatoms

    Directory of Open Access Journals (Sweden)

    T. Bere

    Full Text Available Increasing anthropogenic influence on lotic environments as a result of civilisation has captured public interest because of the consequent problems associated with deterioration of water quality. Various biological monitoring methods that provide a direct measure of ecological integrity by using the response of biota to environmental changes have been developed to monitor the ecological status of lotic environments. Diatoms have been used extensively in this regard and this review attempts to summarise the basic concepts associated with biological monitoring using benthic diatoms. Where possible, examples from work carried out in Brazil are used.

  18. Biological monitoring of lotic ecosystems: the role of diatoms.

    Science.gov (United States)

    Bere, T; Tundisi, J G

    2010-08-01

    Increasing anthropogenic influence on lotic environments as a result of civilisation has captured public interest because of the consequent problems associated with deterioration of water quality. Various biological monitoring methods that provide a direct measure of ecological integrity by using the response of biota to environmental changes have been developed to monitor the ecological status of lotic environments. Diatoms have been used extensively in this regard and this review attempts to summarise the basic concepts associated with biological monitoring using benthic diatoms. Where possible, examples from work carried out in Brazil are used.

  19. Bounding approaches to system identification

    CERN Document Server

    Norton, John; Piet-Lahanier, Hélène; Walter, Éric

    1996-01-01

    In response to the growing interest in bounding error approaches, the editors of this volume offer the first collection of papers to describe advances in techniques and applications of bounding of the parameters, or state variables, of uncertain dynamical systems. Contributors explore the application of the bounding approach as an alternative to the probabilistic analysis of such systems, relating its importance to robust control-system design.

  20. Diatom-induced silicon isotopic fractionation in Antarctic sea ice

    Science.gov (United States)

    Francois, F.; Damien, C.; Jean-Louis, T.; Anthony, W.; Luc, A.

    2006-12-01

    We measured silicon-isotopic composition of dissolved silicon and biogenic silica collected by sequential melting from spring 2003 Antarctic pack ice (Australian sector). Sea ice is a key ecosystem in the Southern Ocean and its melting in spring has been often thought to have a seeding effect for the surface waters, triggering blooms in the mixed layer. This work is the first investigation of the silicon isotopes' proxy in sea ice and allows to estimate the activity of sea-ice diatoms in the different brine structures and the influence of sea- ice diatoms on the spring ice edge blooms. The relative use of the dissolved silicon pool by sea-ice diatoms is usually assessed by calculating nutrient:salinity ratios in the brines. However such an approach is biased by difficulties in evaluating the initial nutrient concentrations in the different brines structures, and by the impossibility to account for late sporadic nutrient replenishments. The silicon-isotopic composition of biogenic silica is a convenient alternative since it integrates an average Si utilization on all generations of diatoms. Measurements were performed on a MC-ICP-MS, in dry plasma mode using external Mg doping. Results are expressed as delta29Si relative to the NBS28 standard. From three sea ice cores with contrasted physico-chemical characteristics, we report significant isotopic fractionations linked to the diatoms activity, with distinct silicon biogeochemical dynamics between different brine structure. The diatoms in snow ice and in brine pockets of frazil or congelation ice have the most positive silicon-isotopic composition (+0.53 to +0.86 p.mil), indicating that they grow in a closed system and use a significant part of the small dissolved silicon pool. In the brine channels and skeletal layer, diatoms display a relatively less positive Si-isotopic composition (+0.41 to +0.70 p.mil), although it is still heavier compared to equilibrium fractionation (+0.38 p.mil). This suggests that they have

  1. R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring.

    Science.gov (United States)

    Rimet, Frédéric; Chaumeil, Philippe; Keck, François; Kermarrec, Lenaïg; Vasselon, Valentin; Kahlert, Maria; Franc, Alain; Bouchez, Agnès

    2016-01-01

    Diatoms are micro-algal indicators of freshwater pollution. Current standardized methodologies are based on microscopic determinations, which is time consuming and prone to identification uncertainties. The use of DNA-barcoding has been proposed as a way to avoid these flaws. Combining barcoding with next-generation sequencing enables collection of a large quantity of barcodes from natural samples. These barcodes are identified as certain diatom taxa by comparing the sequences to a reference barcoding library using algorithms. Proof of concept was recently demonstrated for synthetic and natural communities and underlined the importance of the quality of this reference library. We present an open-access and curated reference barcoding database for diatoms, called R-Syst::diatom, developed in the framework of R-Syst, the network of systematic supported by INRA (French National Institute for Agricultural Research), see http://www.rsyst.inra.fr/en. R-Syst::diatom links DNA-barcodes to their taxonomical identifications, and is dedicated to identify barcodes from natural samples. The data come from two sources, a culture collection of freshwater algae maintained in INRA in which new strains are regularly deposited and barcoded and from the NCBI (National Center for Biotechnology Information) nucleotide database. Two kinds of barcodes were chosen to support the database: 18S (18S ribosomal RNA) and rbcL (Ribulose-1,5-bisphosphate carboxylase/oxygenase), because of their efficiency. Data are curated using innovative (Declic) and classical bioinformatic tools (Blast, classical phylogenies) and up-to-date taxonomy (Catalogues and peer reviewed papers). Every 6 months R-Syst::diatom is updated. The database is available through the R-Syst microalgae website (http://www.rsyst.inra.fr/) and a platform dedicated to next-generation sequencing data analysis, virtual_BiodiversityL@b (https://galaxy-pgtp.pierroton.inra.fr/). We present here the content of the library regarding the

  2. Structural changes in the benthic diatom community along a eutrophication gradient on a tidal flat

    Science.gov (United States)

    Agatz, M.; Asmus, R. M.; Deventer, B.

    1999-11-01

    In the mud- and sandflat region of the outer Königshafen off List on Sylt, the effects of the outflow from a sewage treatment plant on the benthic diatom flora were investigated. The spectrum of shapes, biomass, and diversity was determined in relation to the concentrations of phosphate, silicate, and nitrogen compounds in the overlying and pore water. The biomass increased with the available quantities of nutrients, while the diversity reached a maximum at the intermediate concentrations. Every different set of nutrient concentrations is characterized by a different diatom community. Slight inputs of nutrients led to changes in the relative abundances of forms typical of the habitat. Moderate concentrations permitted the species that are normally present in winter to occur in summer as well. In the strongly eutrophic region, nutrient-loving species that are not locally present under normal conditions formed nearly monospecific populations. A relatively constant input of nutrients almost eliminated the seasonal variations. Navicula gregaria, Nitzschia sigma, and Nitzschia tryblionella proved to be tolerant of pollution, while the genera Achnanthes and Amphora were typical in the nutrient-poor regions. The nutrient budget, particularly that of the nitrogen compounds, was found to be predominant among the physical and chemical factors.

  3. Are Diatoms "Green" Aluminosilicate Synthesis Microreactors for Future Catalyst Production?

    Science.gov (United States)

    Köhler, Lydia; Machill, Susanne; Werner, Anja; Selzer, Carolin; Kaskel, Stefan; Brunner, Eike

    2017-12-16

    Diatom biosilica may offer an interesting perspective in the search for sustainable solutions meeting the high demand for heterogeneous catalysts. Diatomaceous earth (diatomite), i.e., fossilized diatoms, is already used as adsorbent and carrier material. While diatomite is abundant and inexpensive, freshly harvested and cleaned diatom cell walls have other advantages, with respect to purity and uniformity. The present paper demonstrates an approach to modify diatoms both in vivo and in vitro to produce a porous aluminosilicate that is serving as a potential source for sustainable catalyst production. The obtained material was characterized at various processing stages with respect to morphology, elemental composition, surface area, and acidity. The cell walls appeared normal without morphological changes, while their aluminum content was raised from the molar ratio n (Al): n (Si) 1:600 up to 1:50. A specific surface area of 55 m²/g was measured. The acidity of the material increased from 149 to 320 µmol NH₃/g by ion exchange, as determined by NH₃ TPD. Finally, the biosilica was examined by an acid catalyzed test reaction, the alkylation of benzene. While the cleaned cell walls did not catalyze the reaction at all, and the ion exchanged material was catalytically active. This demonstrates that modified biosilica does indeed has potential as a basis for future catalytically active materials.

  4. Diatom distribution in the surficial sediments of Lake Fuxian, Yunnan ...

    African Journals Online (AJOL)

    ajl yemi

    2011-11-30

    Nov 30, 2011 ... (18.2%); there were some phosphorus post-mines which led to higher total phosphorus concentration than that in southern part. The most outstanding characteristic of diatom ... (212 km2 in surface area) is located in the central Yunnan. Province; it is a oligotrophic freshwater lake. It is the second deepest ...

  5. Molecular basis of chromatic adaptation in pennate diatom Phaeodactylum tricornutum

    Czech Academy of Sciences Publication Activity Database

    Herbstová, Miroslava; Bína, David; Koník, P.; Gardian, Zdenko; Vácha, František; Litvín, Radek

    2015-01-01

    Roč. 1847, 6-7 (2015), s. 534-543 ISSN 0005-2728 R&D Projects: GA ČR GBP501/12/G055 Institutional support: RVO:60077344 Keywords : Chromatic adaptation * Diatom * Heterokonta * Light harvesting antenna Subject RIV: CE - Biochemistry Impact factor: 4.864, year: 2015

  6. Diatom centromeres suggest a mechanism for nuclear DNA acquisition.

    Science.gov (United States)

    Diner, Rachel E; Noddings, Chari M; Lian, Nathan C; Kang, Anthony K; McQuaid, Jeffrey B; Jablanovic, Jelena; Espinoza, Josh L; Nguyen, Ngocquynh A; Anzelmatti, Miguel A; Jansson, Jakob; Bielinski, Vincent A; Karas, Bogumil J; Dupont, Christopher L; Allen, Andrew E; Weyman, Philip D

    2017-07-18

    Centromeres are essential for cell division and growth in all eukaryotes, and knowledge of their sequence and structure guides the development of artificial chromosomes for functional cellular biology studies. Centromeric proteins are conserved among eukaryotes; however, centromeric DNA sequences are highly variable. We combined forward and reverse genetic approaches with chromatin immunoprecipitation to identify centromeres of the model diatom Phaeodactylum tricornutum We observed 25 unique centromere sequences typically occurring once per chromosome, a finding that helps to resolve nuclear genome organization and indicates monocentric regional centromeres. Diatom centromere sequences contain low-GC content regions but lack repeats or other conserved sequence features. Native and foreign sequences with similar GC content to P. tricornutum centromeres can maintain episomes and recruit the diatom centromeric histone protein CENH3, suggesting nonnative sequences can also function as diatom centromeres. Thus, simple sequence requirements may enable DNA from foreign sources to persist in the nucleus as extrachromosomal episomes, revealing a potential mechanism for organellar and foreign DNA acquisition.

  7. Colonisation and community structure of benthic diatoms on artificial ...

    African Journals Online (AJOL)

    This was undertaken using tiles as artificial substrates so that we could study how the communities developed after the flood disturbance. The diatom community structure was assessed over a 28-day period following a flood event in October 2012. The Mann Whitney test indicated that there was a statistically significant ...

  8. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus

    KAUST Repository

    Mock, Thomas

    2017-01-17

    The Southern Ocean houses a diverse and productive community of organisms. Unicellular eukaryotic diatoms are the main primary producers in this environment, where photosynthesis is limited by low concentrations of dissolved iron and large seasonal fluctuations in light, temperature and the extent of sea ice. How diatoms have adapted to this extreme environment is largely unknown. Here we present insights into the genome evolution of a cold-adapted diatom from the Southern Ocean, Fragilariopsis cylindrus, based on a comparison with temperate diatoms. We find that approximately 24.7 per cent of the diploid F. cylindrus genome consists of genetic loci with alleles that are highly divergent (15.1 megabases of the total genome size of 61.1 megabases). These divergent alleles were differentially expressed across environmental conditions, including darkness, low iron, freezing, elevated temperature and increased CO2. Alleles with the largest ratio of non-synonymous to synonymous nucleotide substitutions also show the most pronounced condition-dependent expression, suggesting a correlation between diversifying selection and allelic differentiation. Divergent alleles may be involved in adaptation to environmental fluctuations in the Southern Ocean.

  9. Light manipulation and photonics applications of diatom frustules

    DEFF Research Database (Denmark)

    Su, Yanyan

    their applications, manipulation or control of the nanostructure of frustules is desirable. The effect of different light spectra (six different wavelengths throughout the visible range at two light intensities) on the morphology of centric diatom Coscinodiscus granii has been investigated. It has been shown...

  10. Sedimentation of phytoplankton during a diatom bloom : Rates and mechanisms

    DEFF Research Database (Denmark)

    Kiørboe, Thomas; Hansen, J.L.S.; Alldredge, A.L.

    1996-01-01

    recorded in the water column (by divers) nor in sediment traps. The low coagulation rates were due to a very low 'stickiness' of suspended particles. The dominant diatom, Thalassiosira mendiolana, that accounted for up to 75% of the phytoplankton biomass, was not sticky at al, and did not turn sticky upon...

  11. CHECKLIST OF DIATOMS FROM THE LAURENTIAN GREAT LAKES

    Science.gov (United States)

    An updated diatom (Bacillariophyta) checklist for the Great Lakes has been completed (J. Great Lakes Res. 1999) and supplants the preliminary checklist (J. Great Lakes Res. 1978). The present list is effectively a 20-year update. The updated list is based upon: 1) the 1978 checkl...

  12. Enhancement of the reactive iron pool by marine diatoms

    NARCIS (Netherlands)

    Rijkenberg, Micha J. A.; Gerringa, Loes J. A.; Timmermans, Klaas R.; Fischer, Astrid C.; Kroon, Koos J.; Buma, Anita G. J.; Wolterbeek, Bert Th.; de Baar, Hein J. W.

    2008-01-01

    Short term (2 days) laboratory experiments were performed to study the change in irradiance induced production of Fe(II) in seawater in the presence of two open oceanic Southern Ocean diatom species, Thalassiosira sp. and Chaetoceros brevis. Three irradiance conditions were applied: 1) UVB+UVA+VIS,

  13. Do Identical Polar Diatomic Molecules Form Stacked or Linear ...

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 19; Issue 8. Do Identical Polar Diatomic Molecules Form Stacked or Linear Dimers?: Hydrogen Bonding is Not Just Dipole-Dipole Interactions. C W Williams Richard N Zare E Arunan. General Article Volume 19 Issue 8 August 2014 pp 704-712 ...

  14. Intense field non-resonant multiphoton absorption of diatomic molecules

    International Nuclear Information System (INIS)

    We report on the results of nonlinear ionization and dissociation of gas-phase diatomic molecules, H 2 , D 2 , O 2 , and Cl 2 , in an intense (10 11-14 W/cm 2 ) laser field. Measurements include energy and angularly resolved vibrational photoelectron spectroscopy, as well as mass spectroscopy. 5 refs., 2 figs

  15. Zooplankton and diatoms of temporary and permanent freshwater ...

    African Journals Online (AJOL)

    This paper provides a description of the zooplankton and epiphytic diatom communities of permanent and temporary freshwater pans in the Mpumalanga Highveld region of South Africa. Few studies have investigated the biota of pans in this area, which is seriously threatened by mining and agricultural development.

  16. Diatom as an alternative for biostratigraphy research in Karangsambung

    Science.gov (United States)

    Ridwan, Januar

    2018-02-01

    Paleogene stratigraphy of Karangsambung consists of Karangsambung and Totogan olistostrome deposit. The previous biostratigraphy research for those formations used the olistostrome matrix as the main sample. In fact, the olistostrome matrix is also a mixed material that might consist of the mixed material of the older and young sediment, making this sample unrepresentative for biostratigraphy analysis. The previous biostratigraphy research based on the matrix sample should be evaluated and should also consider new criteria for the representative sample. The most suitable biostratigraphy analysis sample from the olistostrome deposit is soft fraction sediment and laminated sediment which represent the suspension deposition phase in the part of olistostrome depositional process. On the other hand, diatom biostratigraphy could be applied in the representative sample related to the diatom living strategy in deep marine as lamination form and also their progressive spreading in Cenozoic. However, the application of diatom biostratigraphy in olistostrome deposit is still new and it lacks of reference, especially for diatom research in Indonesia. Though the application would be difficult to realize, it might open the chance for new research and discovery in Karangsambung biostratigraphy.

  17. Periphytic diatom communities in tributaries around Lake Ichkeul ...

    African Journals Online (AJOL)

    An initial inventory of diatom biodiversity at 12 sites draining into Lake Ichkeul, northern Tunisia, was performed in summer 2014, together with the characterisation of metal pollution status by analysing trace metal concentrations to determine Water Quality Indices. The maximum values of Fe, Mn, Sb, Zn, Cu and Pb were all ...

  18. Four new freshwater diatom species (Bacillariophyceae) from Antarctica

    Czech Academy of Sciences Publication Activity Database

    Zidarova, R.; Van de Vijver, B.; Mataloni, G.; Kopalová, K.; Nedbalová, Linda

    2009-01-01

    Roč. 30, č. 4 (2009), s. 295-310 ISSN 0181-1568 Institutional research plan: CEZ:AV0Z60050516 Keywords : Antarctica * diatoms * James Ross Island Subject RIV: EF - Botanics Impact factor: 0.574, year: 2009

  19. Continental erosion and the Cenozoic rise of marine diatoms.

    Science.gov (United States)

    Cermeño, Pedro; Falkowski, Paul G; Romero, Oscar E; Schaller, Morgan F; Vallina, Sergio M

    2015-04-07

    Marine diatoms are silica-precipitating microalgae that account for over half of organic carbon burial in marine sediments and thus they play a key role in the global carbon cycle. Their evolutionary expansion during the Cenozoic era (66 Ma to present) has been associated with a superior competitive ability for silicic acid relative to other siliceous plankton such as radiolarians, which evolved by reducing the weight of their silica test. Here we use a mathematical model in which diatoms and radiolarians compete for silicic acid to show that the observed reduction in the weight of radiolarian tests is insufficient to explain the rise of diatoms. Using the lithium isotope record of seawater as a proxy of silicate rock weathering and erosion, we calculate changes in the input flux of silicic acid to the oceans. Our results indicate that the long-term massive erosion of continental silicates was critical to the subsequent success of diatoms in marine ecosystems over the last 40 My and suggest an increase in the strength and efficiency of the oceanic biological pump over this period.

  20. The effects of phosphorus limitation on carbon metabolism in diatoms.

    Science.gov (United States)

    Brembu, Tore; Mühlroth, Alice; Alipanah, Leila; Bones, Atle M

    2017-09-05

    Phosphorus is an essential element for life, serving as an integral component of nucleic acids, lipids and a diverse range of other metabolites. Concentrations of bioavailable phosphorus are low in many aquatic environments. Microalgae, including diatoms, apply physiological and molecular strategies such as phosphorus scavenging or recycling as well as adjusting cell growth in order to adapt to limiting phosphorus concentrations. Such strategies also involve adjustments of the carbon metabolism. Here, we review the effect of phosphorus limitation on carbon metabolism in diatoms. Two transcriptome studies are analysed in detail, supplemented by other transcriptome, proteome and metabolite data, to gain an overview of different pathways and their responses. Phosphorus, nitrogen and silicon limitation responses are compared, and similarities and differences discussed. We use the current knowledge to propose a suggestive model for the carbon flow in phosphorus-replete and phosphorus-limited diatom cells.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Authors.

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes

    Czech Academy of Sciences Publication Activity Database

    Bowler, Ch.; Allen, A. E.; Badger, J. H.; Grimwood, J.; Jabbari, K.; Kuo, A.; Maheswari, U.; Martens, C.; Maumus, F.; Otillar, R. P.; Rayko, E.; Salamov, A.; Vandepoele, K.; Beszteri, B.; Gruber, A.; Heijde, M.; Katinka, M.; Mock, T.; Valentin, K.; Verret, F.; Berges, J. A.; Brownlee, C.; Cadoret, J.-P.; Chiovitti, A.; Choi, Ch. J.; Coesel, S.; De Martino, A.; Detter, J. Ch.; Durkin, C.; Falciatore, A.; Fournet, J.; Haruta, M.; Huysman, M. J. J.; Jenkins, B. D.; Jiroutová, Kateřina; Jorgensen, R. E.; Joubert, Y.; Kaplan, A.; Kröger, N.; Kroth, P. G.; La Roche, J.; Lindquist, E.; Lommer, M.; Martin–Jézéquel, V.; Lopez, P. J.; Lucas, S.; Mangogna, M.; McGinnis, K.; Medlin, L. K.; Montsant, A.; Oudot–Le Secq, M.-P.; Napoli, C.; Oborník, Miroslav; Schnitzler Parker, M.; Petit, J.-L.; Porcel, B. M.; Poulsen, N.; Robison, M.; Rychlewski, L.; Rynearson, T. A.; Schmutz, J.; Shapiro, H.; Siaut, M.; Stanley, M.; Sussman, M. R.; Taylor, A. R.; Vardi, A.; von Dassow, P.; Vyverman, W.; Willis, A.; Wyrwicz, L. S.; Rokhsar, D. S.; Weissenbach, J.; Armbrust, E. V.; Green, B. R.; Van de Peer, Y.; Grigoriev, I. V.

    2008-01-01

    Roč. 456, 13-11-2008 (2008), s. 239-244 ISSN 0028-0836 Institutional research plan: CEZ:AV0Z60220518 Keywords : Phaeodactylum * genome * evolution * diatom Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 31.434, year: 2008

  2. Mercury-induced genotoxicity in marine diatom (Chaetoceros tenuissimus)

    Digital Repository Service at National Institute of Oceanography (India)

    Sarker, S.; Desai, S.R.; Verlecar, X.N.; Sarker, M.S.; Sarkar, A.

    In this paper, we present an evaluation of genotoxic responses in marine diatom, Chaetoceros tenuissimus, isolated from Kandla Creek (lat 23.03° N, long 70.22° E), Gujarat, India, in terms of impairment of DNA integrity as a function...

  3. Effect of ageing on survival of benthic diatom propagules

    Digital Repository Service at National Institute of Oceanography (India)

    Anil, A.C.; Mitbavkar, S.; De; Hegde, S.; De; Meher, S.S.; Banerjee, D.

    : Morris, I. (Ed.), The physiological ecology of phytoplankton, Blackwell Scientific Publications, Oxford, pp. 433-463. McQuoid, M.R., Hobson, L.A., 1996. Diatom resting stages. J. Phycol. 32, 889-902. McQuoid, M.R., Godhe, A., Nordberg, K., 2002...

  4. Isolation of diatom Navicula cryptocephala and characterization of ...

    African Journals Online (AJOL)

    sjce

    Isolation of diatom Navicula cryptocephala and characterization of oil extracted for biodiesel production. Sanjay K. R.*, Nagendra Prasad M. N., Anupama S.#, Yashaswi ... was grown on suitable media for extracting and characterizing the oil for biodiesel production. ..... medium was rapidly colonized by cyanobacteria and.

  5. The Kinker diatom collection: discovery – exploration – exploitation

    NARCIS (Netherlands)

    Sterrenburg, F.A.S.; Wolf, de H.

    2004-01-01

    Johannes Kinker (1823-1900) was a typical representative of the Victorian ‘amateur-savant’. As a wellto- do stockbroker he was able to invest considerable time and money into studies of nature, first entomology and subsequently diatoms. The latter subject flourished in the late 19th century and,

  6. Doping of magnetite nanoparticles facilitates clean harvesting of diatom oil as biofuel for sustainable energy

    Science.gov (United States)

    Kumar, Vikas; Singh, Ramesh; Thakur, Shipra; Ballabh Joshi, Khashti; Vinayak, Vandana

    2018-04-01

    Photosynthetic unicellular brown algae diatoms are considered as photobioreactors (PBRs) that synthesize and store oil in the form of lipid droplets and the much of the crude oil we use comes from fossil diatoms. The clean extraction of this crude oil from diatoms is difficult task. The construction of green chemical protocols for the clean separation of diatom oil from cells without killing or to harm the diatom cells is still in its primitive stage. In this report we would like to propose that facile doping of magnetite on diatoms can be used for clean oil separation in PBRs. We doped magnetite nanoparticles onto the surface of diatom Diadesmis confervaceae a diatom which oozes oil naturally. Doping magnetite onto diatoms can also facilitate easy separation of oil when cells are kept in an electromagnetic field. The cell wall of diatom besides having SiOH group has 281 amino acids of which 187–188 amino acids are conserved and are known for metal binding sites. The magnetite nanoparticles bind to the SiOH groups and metal binding sites of amino acids. The presence of appropriate amine functionalized linkers forming peptide aminosilane shells can further facilitate the binding of peptide/polypeptides which can be used in drug delivery. Besides this the magnetite doped diatoms have wide applications in removal of phosphates and chromium from waste water too.

  7. Detection of Diatoms by a Combination of Membrane Filtration and Transparentness.

    Science.gov (United States)

    Zhao, Jian; Wang, Yuzhong; Liu, Chao; Hu, Sunlin; Shi, He; Wen, Jinfeng

    2016-11-01

    Diagnosis of drowning remains a difficult issue in current forensic sciences. A large number of diatoms were lost by removing the supernatant after centrifugation in the conventional forensic diatom test. We developed a novel membrane filtration method to enrich diatoms from samples. A new solution using different ratios of acetic acid and eugenol is prepared to make the membrane transparent. These processes allow the diatom-containing membrane to be visualized and identified easily by light microscopy. The tissues contaminated by water rich in diatoms were detected by the new method for the recovery of diatoms. Eleven drowning cases were analyzed by both the new method and the conventional method to compare the sensitivity of both methods. The recovery of the novel diatom test method was 54.2 ± 23.1%. The positive rate of the novel method has been proven to be superior to the conventional method in the diagnosis of drowning. © 2016 American Academy of Forensic Sciences.

  8. Strong Coupling Corrections in Quantum Thermodynamics

    Science.gov (United States)

    Perarnau-Llobet, M.; Wilming, H.; Riera, A.; Gallego, R.; Eisert, J.

    2018-03-01

    Quantum systems strongly coupled to many-body systems equilibrate to the reduced state of a global thermal state, deviating from the local thermal state of the system as it occurs in the weak-coupling limit. Taking this insight as a starting point, we study the thermodynamics of systems strongly coupled to thermal baths. First, we provide strong-coupling corrections to the second law applicable to general systems in three of its different readings: As a statement of maximal extractable work, on heat dissipation, and bound to the Carnot efficiency. These corrections become relevant for small quantum systems and vanish in first order in the interaction strength. We then move to the question of power of heat engines, obtaining a bound on the power enhancement due to strong coupling. Our results are exemplified on the paradigmatic non-Markovian quantum Brownian motion.

  9. Two Southern Ocean diatoms are more sensitive to ocean acidification and changes in irradiance than the prymnesiophyte Phaeocystis antarctica.

    Science.gov (United States)

    Trimborn, Scarlett; Thoms, Silke; Brenneis, Tina; Heiden, Jasmin P; Beszteri, Sara; Bischof, Kai

    2017-06-01

    To better understand the impact of ocean acidification (OA) and changes in light availability on Southern Ocean phytoplankton physiology, we investigated the effects of pCO 2 (380 and 800 µatm) in combination with low and high irradiance (20 or 50 and 200 µmol photons m -2  s -1 ) on growth, particulate organic carbon (POC) fixation and photophysiology in the three ecologically relevant species Chaetoceros debilis, Fragilariopsis kerguelensis and Phaeocystis antarctica. Irrespective of the light scenario, neither growth nor POC per cell was stimulated by OA in any of the tested species and the two diatoms even displayed negative responses in growth (e.g. C. debilis) or POC content (e.g. F. kerguelensis) under OA in conjunction with high light. For both diatoms, also maximum quantum yields of photosystem II (F v /F m ) were decreased under these conditions, indicating lowered photochemical efficiencies. To counteract the negative effects by OA and high light, the two diatoms showed diverging photoacclimation strategies. While cellular chlorophyll a (Chl a) and fucoxanthin contents were enhanced in C. debilis to potentially maximize light absorption, F. kerguelensis exhibited reduced Chl a per cell, increased disconnection of antennae from photosystem II reaction centers and strongly lowered absolute electron transport rates (ETR). The decline in ETRs in F. kerguelensis might be explained in terms of different species-specific strategies for tuning the available flux of adenosine triphosphate and nicotinamide adenine dinucleotide phosphate. Overall, our results revealed that P. antarctica was more tolerant to OA and changes in irradiance than the two diatoms, which may have important implications for biogeochemical cycling. © 2016 The Authors. Physiologia Plantarum published by John Wiley & Sons Ltd on behalf of Scandinavian Plant Physiology Society.

  10. Low upper bounds of ideals

    OpenAIRE

    Kucera, Antonin; Slaman, Theodore A.

    2007-01-01

    We show that there is a low T-upper bound for the class of K-trivial sets, namely those which are weak from the point of view of algorithmic randomness. This result is a special case of a more general characterization of ideals in Δ02 T-degrees for which there is a low T-upper bound.

  11. Bounds for Asian basket options

    Science.gov (United States)

    Deelstra, Griselda; Diallo, Ibrahima; Vanmaele, Michèle

    2008-09-01

    In this paper we propose pricing bounds for European-style discrete arithmetic Asian basket options in a Black and Scholes framework. We start from methods used for basket options and Asian options. First, we use the general approach for deriving upper and lower bounds for stop-loss premia of sums of non-independent random variables as in Kaas et al. [Upper and lower bounds for sums of random variables, Insurance Math. Econom. 27 (2000) 151-168] or Dhaene et al. [The concept of comonotonicity in actuarial science and finance: theory, Insurance Math. Econom. 31(1) (2002) 3-33]. We generalize the methods in Deelstra et al. [Pricing of arithmetic basket options by conditioning, Insurance Math. Econom. 34 (2004) 55-57] and Vanmaele et al. [Bounds for the price of discrete sampled arithmetic Asian options, J. Comput. Appl. Math. 185(1) (2006) 51-90]. Afterwards we show how to derive an analytical closed-form expression for a lower bound in the non-comonotonic case. Finally, we derive upper bounds for Asian basket options by applying techniques as in Thompson [Fast narrow bounds on the value of Asian options, Working Paper, University of Cambridge, 1999] and Lord [Partially exact and bounded approximations for arithmetic Asian options, J. Comput. Finance 10 (2) (2006) 1-52]. Numerical results are included and on the basis of our numerical tests, we explain which method we recommend depending on moneyness and time-to-maturity.

  12. Tight bounds for break minimization

    NARCIS (Netherlands)

    Brouwer, Andries E.; Post, Gerhard F.; Woeginger, Gerhard

    We consider round-robin sports tournaments with n teams and n − 1 rounds. We construct an infinite family of opponent schedules for which every home-away assignment induces at least 1/4 n(n−2) breaks. This construction establishes a matching lower bound for a corresponding upper bound from the

  13. Response of the diatom flora in the Gdańsk Basin (southern Baltic Sea) to eutrophication in the last century

    Science.gov (United States)

    Witak, Małgorzata

    2016-04-01

    The diatom flora in six short cores (length of 10-20 cm) taken from Gdańsk Basin, southern Baltic Sea, was analyzed in order to response of diatoms to environmental changes over the past 100 years. This study is a part of CLISED project (Climate Change Impact on Ecosystem Health - Marine Sediments Indicators) funded from Norway Grants in the Polish-Norwegian Research Programme. Three cores P116, M1 and P1 were retrieved from the Gdańsk Deep region, whereas P104, BMPK10 and P110 were drilled from the shallower part - Gulf of Gdańsk. The sediment cores were dated by 210Pb and represented time interval of AD 1895-2015. In this period an artificial mouth of the Vistula River near Świbno was excavated and riverine waters flowed directly to the Gulf of Gdańsk. Urbanization, progressive industrialization and an increase in the inflow of waste water had a strong influence on ecosystem in the last 120 years. The transport of large amounts of nutrients, organic matter and pollutants by the rivers resulted in environmental degradation of the Gdańsk Basin and its progressive eutrophication in particular. Diatoms, being the major component of algal assemblages, are excellent bioindicators for assessing the state of basin ecosystems. They are usually abundant in marine sediments, diverse and sensitive to numerous environmental variables, including physical (e.g. light, temperature, water transparency) and chemical (e.g. pH, alkalinity, nutrient availability) factors. Changes in nutrients concentrations may lead to substantial transformations in the structure of diatom assemblages. Samples for diatom analyses (ca. 0.3-2.0 g dry sediment) were prepared following the standard procedure for diatom observation under light microscope (Battarbee, 1986). To estimate the concentration of siliceous microfossils per unit weight of dry sediment (absolute abundance), a random settling technique was used (Bodén, 1991). Permanent diatom preparations were mounted in Naphrax® (refractive

  14. An upper bound on Q-star masses

    International Nuclear Information System (INIS)

    Hochron, D.R.; Selipsky, S.B.

    1992-06-01

    Q-stars (the gravitational generalization of Q-balls, strongly bound bulk matter that an appear in field theories of strongly interacting hadrons) are the only known impact objects consistent with the known bulk structure of nuclei and chiral symmetry that evade the Rhoades-Ruffini upper bound of 3.2M circle-dot . Generic bounds are quite weak: M Q-star circle-dot . If, however, we assume that the 1.558 ms pulsar is a Q-star, equilibrium. A stability criteria of rotating fluids place a much stronger upper bound of M c ≤ 5.3M circle-dot on such models under certain special assumptions. This has important implications for heavy compact objects such as Cygnus X-1

  15. Bounded Entrepreneurial Vitality

    DEFF Research Database (Denmark)

    Langevang, Thilde; Gough, Katherine V.; Yankson, Paul W.K.

    2015-01-01

    entrepreneurship and, on the other hand, female business activities characterized by vulnerability and relatively low achievement. The article shows how regulatory, normative, and cultural–cognitive institutional forces, which have been transformed over time by local and global processes and their interaction......-and-place–specific institutional contexts influence women's entrepreneurship. Drawing on primary data collected in Ghana, where exceptionally more women engage in entrepreneurial activities than men, we examine the scale and characteristics of female entrepreneurial activity, exploring the factors that account for this strong...

  16. Diatoms and diatomaceous earth as novel poultry vaccine adjuvants.

    Science.gov (United States)

    Nazmi, A; Hauck, R; Davis, A; Hildebrand, M; Corbeil, L B; Gallardo, R A

    2017-02-01

    Diatoms are single cell eukaryotic microalgae; their surface possesses a porous nanostructured silica cell wall or frustule. Diatomaceous earth (DE) or diatomite is a natural siliceous sediment of diatoms. Since silica has been proved to have adjuvant capabilities, we propose that diatoms and DE may provide an inexpensive and abundant source of adjuvant readily available to use in livestock vaccines.In a first experiment, the safety of diatoms used as an adjuvant for in-ovo vaccination was investigated. In a second experiment, we assessed the humoral immune response after one in-ovo vaccination with inactivated Newcastle Disease Virus (NDV) and DE as adjuvant followed by 2 subcutaneous boosters on d 21 and 29 of age. In both experiments, results were compared to Freund's incomplete adjuvant and aluminum hydroxide.No detrimental effects on hatchability and chick quality were detected after in-ovo inoculation of diatoms and DE in experiments 1 and 2 respectively. In experiment 2 no humoral responses were detected after the in-ovo vaccination until 29 d of age. Seven d after the second subcutaneous booster an antibody response against NDV was detected in chickens that had received vaccines adjuvanted with Freund's incomplete adjuvant, aluminum hydroxide, and DE. These responses became significantly higher 10 d after the second booster. Finally, 15 d after the second booster, the humoral responses induced by the vaccine with Freund's incomplete adjuvant were statistically higher, followed by comparable responses induced by vaccines containing DE or aluminum hydroxide that were significantly higher than DE+PBS, PBS+INDV and PBS alone. From an applied perspective, we can propose that DE can serve as a potential adjuvant for vaccines against poultry diseases. Published by Oxford University Press on behalf of Poultry Science Association 2016. This work is written by (a) US Government employee(s) and is in the public domain in the US.

  17. Toxicity of dissolved and precipitated aluminium to marine diatoms.

    Science.gov (United States)

    Gillmore, Megan L; Golding, Lisa A; Angel, Brad M; Adams, Merrin S; Jolley, Dianne F

    2016-05-01

    Localised aluminium contamination can lead to high concentrations in coastal waters, which have the potential for adverse effects on aquatic organisms. This research investigated the toxicity of 72-h exposures of aluminium to three marine diatoms (Ceratoneis closterium (formerly Nitzschia closterium), Minutocellus polymorphus and Phaeodactylum tricornutum) by measuring population growth rate inhibition and cell membrane damage (SYTOX Green) as endpoints. Toxicity was correlated to the time-averaged concentrations of different aluminium size-fractions, operationally defined as diatom species. C. closterium was the most sensitive species (10% inhibition of growth rate (72-h IC10) of 80 (55-100)μg Al/L (95% confidence limits)) while M. polymorphus (540 (460-600)μg Al/L) and P. tricornutum (2100 (2000-2200)μg Al/L) were less sensitive (based on measured total aluminium). Dissolved aluminium was the primary contributor to toxicity in C. closterium, while a combination of dissolved and precipitated aluminium forms contributed to toxicity in M. polymorphus. In contrast, aluminium toxicity to the most tolerant diatom P. tricornutum was due predominantly to precipitated aluminium. Preliminary investigations revealed the sensitivity of C. closterium and M. polymorphus to aluminium was influenced by initial cell density with aluminium toxicity significantly (pdiatoms suggesting that mechanisms of aluminium toxicity to diatoms do not involve compromising the plasma membrane. These results indicate that marine diatoms have a broad range in sensitivity to aluminium with toxic mechanisms related to both dissolved and precipitated aluminium. Copyright © 2016 Elsevier B.V. All rights reserved.

  18. Market Access through Bound Tariffs

    DEFF Research Database (Denmark)

    Sala, Davide; Schröder, Philipp J.H.; Yalcin, Erdal

    on the risk that exporters face in destination markets. The present paper formalizes the underlying interaction of risk, fixed export costs and firms' market entry decisions based on techniques known from the real options literature; doing so we highlight the important role of bound tariffs at the extensive...... margin of trade. We find that bound tariffs are more effective with higher risk destination markets, that a large binding overhang may still command substantial market access, and that reductions in bound tariffs generate effective market access even when bound rates are above current and long......WTO negotiations deal predominantly with bound - besides applied - tariff rates. But, how can reductions in tariffs ceilings, i.e. tariff rates that no exporter may ever actually be confronted with, generate market access? The answer to this question relates to the effects of tariff bindings...

  19. Metabolism of organically bound tritium

    International Nuclear Information System (INIS)

    Travis, C.C.

    1984-01-01

    The classic methodology for estimating dose to man from environmental tritium ignores the fact that organically bound tritium in foodstuffs may be directly assimilated in the bound compartment of tissues without previous oxidation. We propose a four-compartment model consisting of a free body water compartment, two organic compartments, and a small, rapidly metabolizing compartment. The utility of this model lies in the ability to input organically bound tritium in foodstuffs directly into the organic compartments of the model. We found that organically bound tritium in foodstuffs can increase cumulative total body dose by a factor of 1.7 to 4.5 times the free body water dose alone, depending on the bound-to-loose ratio of tritium in the diet. Model predictions are compared with empirical measurements of tritium in human urine and tissue samples, and appear to be in close agreement. 10 references, 4 figures, 3 tables

  20. Seasonality of chrysophyte cyst and diatom assemblages in varved Lake Nautajärvi – implications for palaeolimnological studies

    Directory of Open Access Journals (Sweden)

    Sanna T. Korkonen

    2017-02-01

    Full Text Available Phytoplankton species composition is strongly affected by seasons, which should be taken into account in palaeolimnological studies. Although chrysophyte cysts and diatoms are widely used as palaeobioindicators in palaeolimnological studies, only recently have attempts been made to use their modern deposition from sediment trap data to provide more detailed, seasonal-based environmental reconstructions. In this study sediment traps were used to record seasonality of chrysophyte cysts and diatoms during two climatically different years 2009 and 2010 in an annually laminated Lake Nautajärvi, Finland, and this seasonal data was then compared with the fossil record derived from the surface sediment of the lake. The overall changes in cyst and diatom assemblages between years and seasons are subtle. For both groups, no clear connection to any particular season could be detected in the sediment surface. Despite the climatological differences between the study years, the inter-annual accumulation rates of both algal groups were surprisingly similar, whereas the intra-annual accumulation rates differed substantially. This and the high amount of taxa occurring during all seasons in the trap samples implies that primary producers are more dependent on prevailing seasonal limnological conditions than on rapid, shortly lived episodes. Redundancy analysis (RDA revealed that chrysophyte cyst assemblages from the spring sediment trap are mainly controlled by the spring discharge intensity, a surrogate variable of spring weather conditions, whereas precipitation and air temperature have the strongest impact on the summer assemblages. However, only discharge explains statistically significantly the variance in the cyst data. Precipitation and air temperature have the strongest impact on the diatom summer samples, whereas the spring sediment trap sample of the snowy and harsh winter of 2010 was strongly correlated with the spring discharge. However, none of the

  1. The structure and diversity of freshwater diatom assemblages from Franz Josef Land Archipelago: a northern outpost for freshwater diatoms.

    Science.gov (United States)

    Pla-Rabés, Sergi; Hamilton, Paul B; Ballesteros, Enric; Gavrilo, Maria; Friedlander, Alan M; Sala, Enric

    2016-01-01

    We examined diatom assemblages from 18 stream and pond samples in the Franz Josef Land Archipelago (FJL), the most northern land of Eurasia. More than 216 taxa were observed, revealing a rich circumpolar diatom flora, including many undescribed taxa. Widely distributed taxa were the most abundant by cell densities, while circumpolar taxa were the most species rich. Stream and pond habitats hosted different assemblages, and varied along a pH gradient. Diatoma tenuis was the most abundant and ubiquitous taxon. However, several circumpolar taxa such as Chamaepinnularia gandrupii, Cymbella botellus, Psammothidium sp. and Humidophila laevissima were also found in relatively high abundances. Aerophilic taxa were an important component of FJL diatom assemblages (Humidophila spp., Caloneis spp. and Pinnularia spp.), reflecting the large and extreme seasonal changes in Arctic conditions. We predict a decrease in the abundance of circumpolar taxa, an increase in local (α-) freshwater diatom diversity, but a decrease in regional diversity (circumpolar homogenization) as a result of current warming trends and to a lesser extent the increasing human footprint in the region.

  2. Infinite Horizon Discrete Time Control Problems for Bounded Processes

    Directory of Open Access Journals (Sweden)

    2009-03-01

    Full Text Available We establish Pontryagin Maximum Principles in the strong form for infinite horizon optimal control problems for bounded processes, for systems governed by difference equations. Results due to Ioffe and Tihomirov are among the tools used to prove our theorems. We write necessary conditions with weakened hypotheses of concavity and without invertibility, and we provide new results on the adjoint variable. We show links between bounded problems and nonbounded ones. We also give sufficient conditions of optimality.

  3. Bounds on charge and heat diffusivities in momentum dissipating holography

    Energy Technology Data Exchange (ETDEWEB)

    Amoretti, Andrea [Dipartimento di Fisica, Università di Genova,via Dodecaneso 33, I-16146, Genova (Italy); INFN - Sezione di Genova,via Dodecaneso 33, I-16146, Genova (Italy); Lorentz Institute for Theoretical Physics,Niels Bohrweg 2, Leiden NL-2333 CA (Netherlands); Braggio, Alessandro [INFN - Sezione di Genova,via Dodecaneso 33, I-16146, Genova (Italy); CNR-SPIN,Via Dodecaneso 33, 16146, Genova (Italy); Magnoli, Nicodemo [Dipartimento di Fisica, Università di Genova,via Dodecaneso 33, I-16146, Genova (Italy); INFN - Sezione di Genova,via Dodecaneso 33, I-16146, Genova (Italy); Musso, Daniele [Abdus Salam International Centre for Theoretical Physics (ICTP),Strada Costiera 11, I-34151 Trieste (Italy)

    2015-07-20

    Inspired by a recently conjectured universal bound for thermo-electric diffusion constants in quantum critical, strongly coupled systems and relying on holographic analytical computations, we investigate the possibility of formulating Planckian bounds in different holographic models featuring momentum dissipation. For a certain family of solutions to a simple massive gravity dilaton model at zero charge density we find linear in temperature resistivity and entropy density alongside a constant electric susceptibility. In addition we explicitly find that the sum of the thermo-electric diffusion constants is bounded.

  4. Combining Alphas via Bounded Regression

    Directory of Open Access Journals (Sweden)

    Zura Kakushadze

    2015-11-01

    Full Text Available We give an explicit algorithm and source code for combining alpha streams via bounded regression. In practical applications, typically, there is insufficient history to compute a sample covariance matrix (SCM for a large number of alphas. To compute alpha allocation weights, one then resorts to (weighted regression over SCM principal components. Regression often produces alpha weights with insufficient diversification and/or skewed distribution against, e.g., turnover. This can be rectified by imposing bounds on alpha weights within the regression procedure. Bounded regression can also be applied to stock and other asset portfolio construction. We discuss illustrative examples.

  5. Classical study of the rovibrational dynamics of a polar diatomic molecule in static electric fields

    Energy Technology Data Exchange (ETDEWEB)

    Inarrea, Manuel, E-mail: manuel.inarrea@unirioja.e [Area de Fisica, Universidad de la Rioja, E-26006 Logrono (Spain); Salas, J. Pablo [Area de Fisica, Universidad de la Rioja, E-26006 Logrono (Spain); Gonzalez-Ferez, Rosario [Instituto ' Carlos I' de Fisica Teorica y Computacional, Universidad de Granada, E-18071 Granada (Spain); Departamento de Fisica Atomica, Molecular y Nuclear, Universidad de Granada, E-18071 Granada (Spain); Schmelcher, Peter [Theoretische Chemie, Physikalisch-Chemisches Institut, D-69120 Heidelberg (Germany); Physikalisches Institut, Universitaet Heidelberg, D-69120 Heidelberg (Germany)

    2010-01-04

    We study the classical dynamics of a polar diatomic molecule in the presence of a strong static homogeneous electric field. Our full rovibrational investigation includes the interaction with the field due to the permanent electric dipole moment and the polarizability of the molecule. Using the LiCs molecule as a prototype, we explore the stability of the equilibrium points and their bifurcations as the field strength is increased. The phase space structure and its dependence on the energy and field strength are analyzed in detail. We demonstrate that depending on the field strength and on the energy, the phase space is characterized either by regular features or by small stochastic layers of chaotic motion.

  6. Structure of deformable diatomic molecules: a modified n-butane liquid

    International Nuclear Information System (INIS)

    Jang, Seanea; Kim, Soonchul; Lee, Songhi

    2005-01-01

    The density functional approximation for polyatomic molecules, which is based on the bridge function of the intermolecular interaction, was developed and applied to investigate the thermodynamic and the structural properties of deformable diatomic molecules. The Percus trick was employed to calculate the uniform structure of modified n-butane. The calculated static correlation functions were used to predict the density behaviors of a modified n-butane liquid at liquid-solid interfaces. The theoretical results show that (i) at low densities, the hypernetted-chain (HNC) equation compares with the density functional approximation based on the bridge function and that (ii) the relative population between the gauche and the trans states strongly affects the liquid structure at liquid-solid interfaces.

  7. Diatom assemblage in a tropical lake of northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Lilian Rodrigues do Nascimento

    2010-02-01

    Full Text Available The composition and spatial variation of diatom assemblage in surface sediments of Caçó Lake (shallow, mesotrophic and weakly acid lake - Maranhão State, Brazil were analyzed in order to know the distribution pattern of the species along the lake during rainy season (April 1999. Four zones were established in the lake based on 21 diatoms species and habitat affinities. The first three zones (prime three meters deep to six meters deep were marked by the occurrence of Pinnularia gigas, Frustulia rhomboides, Encyonopsis krasskei, Eunotia camelus, E. femoriformis and E. monodon. Zone IV (seven to nine meters deep was inhabited mainly by Surirella biseriata and Fragilariforma floridana. During the beginning of the rainy season, the diatom assemblage in Caçó Lake was composed mainly by benthic and epiphytic forms that reflected the low lake levels and the abundance of littoral vegetation present in this lake.Com o objetivo de se conhecer a dinâmica espacial e a distribuição das diatomáceas contidas no sedimento superficial do lago Caçó, durante o período de chuvas (abril de 1999 foram realizadas coletas em um "transect" horizontal. A partir da observação destas coletas efetuadas a cada 1 metro pode-se observar que a distribuição das diatomáceas esteve fortemente ligada a ocorrência do banco de macrófitas da sua margem, com a ocorrência maciça das espécies epifíticas e bentônicas. A análise de agrupamento de dados permitiu uma melhor visualização, da sua distribuição a cada profundidade e também das associações específicas em cada zona. Os resultados deste estudo permitiram concluir que a ocorrência e distribuição das diatomáceas do Lago Caçó está fortemente ligada ao banco de macrófitas localizado em suas margens, definindo assim zonas características dentro do lago.

  8. Ribosomal RNA analysis indicates a benthic pennate diatom ancestry for the endosymbionts of the dinoflagellates Peridinium foliaceum and Peridinium balticum (Pyrrhophyta).

    Science.gov (United States)

    Chesnick, J M; Kooistra, W H; Wellbrock, U; Medlin, L K

    1997-01-01

    The establishment of chloroplasts as cellular organelles in the dinoflagellate, heterokont (stramenopile), haptophyte, and cryptophyte algae is widely accepted to have been the result of secondary endosymbiotic events, that is, the uptake of a photosynthetic eukaryote by a phagotrophic eukaryote. However, the circumstances that promote such associations between two phylogenetically distinct organisms and result in the integration of their genomes to form a single functional photosynthetic cell is unclear. The dinoflagellates Peridinium foliaceum and Peridinium balticum are unusual in that each contains a membrane-bound eukaryotic heterokont endosymbiont. These symbioses have been interpreted, through data derived from ultrastructural and biochemical investigations, to represent an intermediate stage of secondary endosymbiotic chloroplast acquisition. In this study we have examined the phylogenetic origin of the P. foliaceum and P. balticum heterokont endosymbionts through analysis of their nuclear small subunit ribosomal RNA genes. Our analyses clearly demonstrate both endosymbionts are pennate diatoms belonging to the family Bacillariaceae. Since members of the Bacillariaceae are usually benthic, living on shallow marine sediments, the manner in which establishment of a symbiosis between a planktonic flagellated dinoflagellate and a bottom-dwelling diatom is discussed. In particular, specific environmentally-associated life strategy stages of the host and symbiont, coupled with diatom food preferences by the dinoflagellate, may have been vital to the formation of this association.

  9. Do diatoms run downhill? Using biodiversity of terrestrial and aquatic diatoms to identify hydrological connectivity between aquatic zones in Luxembourg

    Science.gov (United States)

    Pfister, L.; Wetzel, C. E.; Martinez-Carreras, N.; Frentress, J.; Ector, L.; Hoffmann, L.; McDonnell, J. J.

    2011-12-01

    Diatoms are siliceous unicellular algae, and range in size between a few and more than 500 micrometers. Diatoms are spread worldwide, live in many aquatic habitats, have many life forms and their short generation time make them respond rapidly to environmental changes. Their taxonomic diversity represents a valuable tool to assess water quality as each taxon has specific responses to environmental factors. Recently, diatoms have been used as tracers to detect the onset/cessation of surface runoff through binary classification of terrestrial and aquatic species in the Attert basin in Luxembourg. In order to continue the validation of these first results, we have collected samples during rain events at different seasons of the year using automatic stream water samplers, grab samples of diatoms from various terrestrial and subaerial substrates (bryophytes, litter and leaves), as well as from aquatic habitats (epilithon, epipelon and drift samples). This new type of information will be used to constrain assumptions of the conventional tracer-based hydrograph separation technique (i.e. using geochemistry and stable isotopes). The first results concerning the diatom flora, based on 39 samples, revealed 152 species belonging to 38 genera. The most species-rich genera were Pinnularia (15.8% - 24 taxa), Eunotia (13.2% - 20 taxa), Gomphonema (8.6% - 13 taxa), Navicula (7.2% - 11 taxa) and Stauroneis (5.3% - 8 taxa). The flora are mainly composed of oligotrophic and/or acidophilic taxa (32.0%), ubiquitous (14.0%) or poorly known ecologically species (43.0%). The most important taxa found in drift samples were Fragilariforma virescens, Fragilaria capucina sensu lato, Planothidium lanceolatum, Eunotia minor, Achnanthidium kranzii, Karayevia oblongella and Eunotia incisa. In the riparian zone (n = 10), 102 species were observed, with Eunotia exigua var. tenella, Eunotia botuliformis and Pinnularia perirrorata being among the most frequent. Epilithic samples from the main channel

  10. A strongly coupled quark-gluon plasma

    Energy Technology Data Exchange (ETDEWEB)

    Shuryak, Edward [Department of Physics and Astronomy, University at Stony Brook, NY 11794 (United States)

    2004-08-01

    Successful description of robust collective flow phenomena at RHIC by ideal hydrodynamics, recent observations of bound c-barc,q-barq states on the lattice, and other theoretical developments indicate that QGP produced at RHIC, and probably in a wider temperature region T{sub c} < T < 4T{sub c}, is not a weakly coupled quasiparticle gas as believed previously. We discuss how strong the interaction is and why it seems to generate hundreds of binary channels with bound states, surviving well inside the QGP phase. We in particular discuss their effect on pressure and viscosity. We conclude by reviewing the similar phenomena for other 'strongly coupled systems', such as (i) strongly coupled supersymmetric theories studied via Maldacena duality; (ii) trapped ultra-cold atoms with very large scattering length, tuned to Feschbach resonances.

  11. A theory of the strong interactions

    International Nuclear Information System (INIS)

    Gross, D.J.

    1979-01-01

    The most promising candidate for a fundamental microscopic theory of the strong interactions is a gauge theory of colored quarks-Quantum Chromodynamics (QCD). There are many excellent reasons for believing in this theory. It embodies the broken symmetries, SU(3) and chiral SU(3)xSU(3), of the strong interactions and reflects the success of (albeit crude) quark models in explaining the spectrum of the observed hadrons. The hidden quantum number of color, necessary to account for the quantum numbers of the low lying hadrons, plays a fundamental role in this theory as the SU(3) color gauge vector 'gluons' are the mediators of the strong interactions. The absence of physical quark states can be 'explained' by the hypothesis of color confinement i.e. that hadrons are permanently bound in color singlet bound states. Finally this theory is unique in being asymptotically free, thus accounting for the almost free field theory behvior of quarks observed at short distances. (Auth.)

  12. On functions of bounded semivariation

    Czech Academy of Sciences Publication Activity Database

    Monteiro, Giselle Antunes

    2015-01-01

    Roč. 40, č. 2 (2015), s. 233-276 ISSN 0147-1937 Institutional support: RVO:67985840 Keywords : semivariation * functions of bounded variation * regulated functions Subject RIV: BA - General Mathematics http://projecteuclid.org/euclid. rae /1491271216

  13. Computational Lower Bounds Using Diagonalization

    Indian Academy of Sciences (India)

    Home; Journals; Resonance – Journal of Science Education; Volume 14; Issue 7. Computational Lower Bounds Using Diagonalization - Languages, Turing Machines and Complexity Classes. M V Panduranga Rao. General Article Volume 14 Issue 7 July 2009 pp 682-690 ...

  14. Pliocene Antarctic sea-ice reconstruction based on the diatom record the ANDRILL 1B core

    Science.gov (United States)

    Scherer, R. P.; Sjunneskog, C. M.; Winter, D.; Riesselman, C.

    2010-12-01

    The ANtarctic DRILLing Program’s AND-1B core, comprising 13 interglacial diatomaceous sections spanning the early Pliocene to the early Pleistocene, provides a largely complete record of Pliocene climate and sea-ice conditions in the Ross Sea. As primary producers, diatoms are directly influenced by surface water conditions, thus fossil assemblages provide a high quality proxy for past surface waters. The modern diatom flora of the Southern Ocean reflects the strong zonal system characterized by a seasonal sea-ice zone (SSIZ), a permanent open ocean zone (POOZ), and a subantarctic zone (SAZ), each with a distinct water column and sedimentary diatom assemblage. The stratigraphic distribution of these assemblages in the AND-1B core provides a history of changing sea surface temperature (SST) and sea-ice conditions through the Pliocene and early Pleistocene. In the early to mid-Pliocene section (4.6-3.3 Ma) the SSIZ is only represented by a few percent, including during glacial stages. This contrasts with the >80% present in the modern western Ross Sea. The SAZ is well represented during this interval in the core, along with the POOZ assemblage, despite the high latitude and proximity to the coastline. This assemblage indicates minimal sea-ice during the summer photoperiod at this latitude. The SSIZ assemblage is present but remains minor during the latter part of the mid-Pliocene (3.3-3.0 Ma). The diatom assemblage suggests surface water stratification, possibly indicating persistent polynya conditions. This period is followed by an interval characterized by both a slight increase in sea-ice and in subantarctic species, which we interpret as reflecting stronger seasonal SST variability compared to prior periods. The sea-ice assemblage and specific sea-ice indicator species increase slightly through the late Pliocene (2.0 Ma) and early Pleistocene (1.07 Ma) but never approach the abundance observed in the modern Ross Sea. These results show that the seasonal sea

  15. Efficient numerical method for investigating diatomic molecules with single active electron subjected to intense and ultrashort laser fields

    Science.gov (United States)

    Kiss, Gellért Zsolt; Borbély, Sándor; Nagy, Ladislau

    2017-12-01

    We have presented here an efficient numerical approach for the ab initio numerical solution of the time-dependent Schrödinger Equation describing diatomic molecules, which interact with ultrafast laser pulses. During the construction of the model we have assumed a frozen nuclear configuration and a single active electron. In order to increase efficiency our system was described using prolate spheroidal coordinates, where the wave function was discretized using the finite-element discrete variable representation (FE-DVR) method. The discretized wave functions were efficiently propagated in time using the short-iterative Lanczos algorithm. As a first test we have studied here how the laser induced bound state dynamics in H2+ is influenced by the strength of the driving laser field.

  16. Diatom. A potential bio-accumulator of gold

    International Nuclear Information System (INIS)

    Chakraborty, N.; Pal, R.; Ramaswami, A.; Nayak, D.; Lahiri, S.

    2006-01-01

    The bioaccumulation of gold in trace concentration by Nitzschia obtusa and Navicula minima, two members of bacillariophyceae, has been studied. It has been observed that Nitzschia obtusa showed better accumulation of gold in acidic pH in comparison to neutral and basic pH. Maximum accumulation was observed with 1 mg x kg -1 or less gold concentration. However, the accumulation by the living cells was reduced when the matrix concentration was higher. Navicula minima, on the other hand, found to be a better accumulator of gold in wide ranges of pH and substrate concentration of the media. It was also inferred that the gold accumulation by diatom was mainly due to adsorption by biosilica (siliceous frustules of dead diatom cells). Accumulated gold was recovered with conc. HNO 3 . (author)

  17. Momentum autocorrelation function of a classic diatomic chain

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Ming B., E-mail: mingbyu@gmail.com

    2016-10-23

    A classical harmonic diatomic chain is studied using the recurrence relations method. The momentum autocorrelation function results from contributions of acoustic and optical branches. By use of convolution theorem, analytical expressions for the acoustic and optical contributions are derived as even-order Bessel function expansions with coefficients given in terms of integrals of elliptic functions in real axis and a contour parallel to the imaginary axis, respectively. - Highlights: • Momentum autocorrelation function of a classic diatomic chain is studied. • It is derived as even-order Bessel function expansion using the convolution theorem. • The expansion coefficients are integrals of elliptic functions. • Addition theorem is used to reduce complex elliptic function to complex sum of real ones.

  18. Novel sex cells and evidence for sex pheromones in diatoms.

    Science.gov (United States)

    Sato, Shinya; Beakes, Gordon; Idei, Masahiko; Nagumo, Tamotsu; Mann, David G

    2011-01-01

    Diatoms belong to the stramenopiles, one of the largest groups of eukaryotes, which are primarily characterized by a presence of an anterior flagellum with tubular mastigonemes and usually a second, smooth flagellum. Based on cell wall morphology, diatoms have historically been divided into centrics and pennates, of which only the former have flagella and only on the sperm. Molecular phylogenies show the pennates to have evolved from among the centrics. However, the timing of flagellum loss--whether before the evolution of the pennate lineage or after--is unknown, because sexual reproduction has been so little studied in the 'araphid' basal pennate lineages, to which Pseudostaurosira belongs. Sexual reproduction of an araphid pennate, Pseudostaurosira trainorii, was studied with light microscopy (including time lapse observations and immunofluorescence staining observed under confocal scanning laser microscopy) and SEM. We show that the species produces motile male gametes. Motility is mostly associated with the extrusion and retrieval of microtubule-based 'threads', which are structures hitherto unknown in stramenopiles, their number varying from one to three per cell. We also report experimental evidence for sex pheromones that reciprocally stimulate sexualization of compatible clones and orientate motility of the male gametes after an initial 'random walk'. The threads superficially resemble flagella, in that both are produced by male gametes and contain microtubules. However, one striking difference is that threads cannot beat or undulate and have no motility of their own, and they do not bear mastigonemes. Threads are sticky and catch and draw objects, including eggs. The motility conferred by the threads is probably crucial for sexual reproduction of P. trainorii, because this diatom is non-motile in its vegetative stage but obligately outbreeding. Our pheromone experiments are the first studies in which gametogenesis has been induced in diatoms by cell

  19. Novel sex cells and evidence for sex pheromones in diatoms.

    Directory of Open Access Journals (Sweden)

    Shinya Sato

    Full Text Available BACKGROUND: Diatoms belong to the stramenopiles, one of the largest groups of eukaryotes, which are primarily characterized by a presence of an anterior flagellum with tubular mastigonemes and usually a second, smooth flagellum. Based on cell wall morphology, diatoms have historically been divided into centrics and pennates, of which only the former have flagella and only on the sperm. Molecular phylogenies show the pennates to have evolved from among the centrics. However, the timing of flagellum loss--whether before the evolution of the pennate lineage or after--is unknown, because sexual reproduction has been so little studied in the 'araphid' basal pennate lineages, to which Pseudostaurosira belongs. METHODS/PRINCIPAL FINDING: Sexual reproduction of an araphid pennate, Pseudostaurosira trainorii, was studied with light microscopy (including time lapse observations and immunofluorescence staining observed under confocal scanning laser microscopy and SEM. We show that the species produces motile male gametes. Motility is mostly associated with the extrusion and retrieval of microtubule-based 'threads', which are structures hitherto unknown in stramenopiles, their number varying from one to three per cell. We also report experimental evidence for sex pheromones that reciprocally stimulate sexualization of compatible clones and orientate motility of the male gametes after an initial 'random walk'. CONCLUSIONS/SIGNIFICANCE: The threads superficially resemble flagella, in that both are produced by male gametes and contain microtubules. However, one striking difference is that threads cannot beat or undulate and have no motility of their own, and they do not bear mastigonemes. Threads are sticky and catch and draw objects, including eggs. The motility conferred by the threads is probably crucial for sexual reproduction of P. trainorii, because this diatom is non-motile in its vegetative stage but obligately outbreeding. Our pheromone experiments

  20. Bacterial colonization of the freshwater planktonic diatom Fragilaria crotonensis

    Czech Academy of Sciences Publication Activity Database

    Znachor, Petr; Šimek, Karel; Nedoma, Jiří

    2012-01-01

    Roč. 66, č. 1 (2012), s. 87-94 ISSN 0948-3055 R&D Projects: GA ČR(CZ) GA206/08/0015; GA ČR(CZ) GAP504/11/2177; GA ČR(CZ) GAP504/11/2182 Institutional research plan: CEZ:AV0Z60170517 Keywords : PDMPO * bacterial colonization * diatoms * Fragilaria crotonensis * flood * reservoir Subject RIV: DA - Hydrology ; Limnology Impact factor: 2.037, year: 2012

  1. Interface states in a class of heterojunctions between diatomic semiconductors

    International Nuclear Information System (INIS)

    Kandilarov, B.D.; Detcheva, V.

    1979-09-01

    The theory of interface state in heterojunctions between diatomic semiconductors is developed in the framework of the S-matrix approach and on the basis of a one-dimensional model. The condition for the existence of interface states is explicitly derived for undeformed and deformed herterojunctions. Numerical analysis is performed and several particular cases are discussed in order to clarify the general features of the problem. (author)

  2. The use of diatoms in ecotoxicology and bioassessment: Insights, advances and challenges.

    Science.gov (United States)

    Pandey, Lalit K; Bergey, Elizabeth A; Lyu, Jie; Park, Jihae; Choi, Soyeon; Lee, Hojun; Depuydt, Stephen; Oh, Young-Tae; Lee, Sung-Mo; Han, Taejun

    2017-07-01

    Diatoms are regularly used for bioassessment and ecotoxicological studies in relation to environmental and anthropogenic disturbances. Traditional taxonomical diatom parameters (cell counts, biovolume estimates, species richness, diversity indices and metrics using sensitive and tolerant diatom species) are regularly used for these studies. In the same context, very less focus was given on new endpoints of diatoms (life-forms, nuclear anomalies, alteration in photosynthetic apparatus shape, motility, lipid bodies, size reduction and deformities), in spite of their numerous merits, such as, their easiness, quickness, cheapness, global acceptation and no especial training in diatom taxonomy. In this review we analyzed 202 articles (from lab and field studies), with the aim to investigate the bioassessment and ecotoxicological advancement taken place in diatom research especially in terms of exploring new endpoints along with the traditional taxonomical parameters in a perspective which can greatly enhance the evaluation of fluvial ecosystem quality for biomonitoring practices. Copyright © 2017 Elsevier Ltd. All rights reserved.

  3. A simple digestion method with a Lefort aqua regia solution for diatom extraction.

    Science.gov (United States)

    Wang, Huipin; Liu, Yan; Zhao, Jian; Hu, Sunlin; Wang, Yuzhong; Liu, Chao; Zhang, Yanji

    2015-01-01

    Presence of diatoms in tissues has been considered as a significant sign of drowning. However, there are limitations in the present extraction methods. We developed a new digestion method using the Lefort aqua regia solution (3:1 nitric acid to hydrochloric acid) for diatom extraction and evaluated the digestive capability, diatom destruction, and diatoms' recovery of this new method. The kidney tissues from rabbit mixed with water rich in diatoms were treated by the Lefort aqua regia digestion method (n = 10) and the conventional acid digestion method (n = 10). The results showed that the digestive capability of Lefort aqua regia digestion method was superior to conventional acid digestion method (p 0.05). The Lefort aqua regia reagent is an improvement over the conventional acid digestion for recovery of diatoms from tissue samples. © 2014 American Academy of Forensic Sciences.

  4. Models of the delayed nonlinear Raman response in diatomic gases

    International Nuclear Information System (INIS)

    Palastro, J. P.; Antonsen, T. M. Jr.; Pearson, A.

    2011-01-01

    We examine the delayed response of a diatomic gas to a polarizing laser field with the goal of obtaining computationally efficient methods for use with laser pulse propagation simulations. We demonstrate that for broadband pulses, heavy molecules such as O 2 and N 2 , and typical atmospheric temperatures, the initial delayed response requires only classical physics. The linear kinetic Green's function is derived from the Boltzmann equation and shown to be in excellent agreement with full density-matrix calculations. A straightforward perturbation approach for the fully nonlinear, kinetic impulse response is also presented. With the kinetic theory a reduced fluid model of the diatomic gas' orientation is derived. Transport coefficients are introduced to model the kinetic phase mixing of the delayed response. In addition to computational rapidity, the fluid model provides intuition through the use of familiar macroscopic quantities. Both the kinetic and the fluid descriptions predict a nonlinear steady-state alignment after passage of the laser pulse, which in the fluid model is interpreted as an anisotropic temperature of the diatomic fluid with respect to motion about the polarization axis.

  5. Coastal bacterioplankton community response to diatom-derived polysaccharide microgels.

    Science.gov (United States)

    Taylor, Joe D; Cunliffe, Michael

    2017-04-01

    Phytoplankton-derived polysaccharide microgels, including transparent exopolymer particles (TEP), are a major component of the marine organic carbon pool. Previous studies have made correlative links between phytoplankton material and bacterioplankton, and performed experiments that assess general responses to phytoplankton, yet there is a lack of direct empirical evidence of specific bacterioplankton responses to natural phytoplankton polysaccharide microgels. In this study, we used diatom produced TEP in controlled incubation experiments to determine the impact of polysaccharide microgels on a coastal bacterioplankton community. Quantification of bacterial 16S rRNA gene transcripts showed that the addition of TEP caused an increase in bacterioplankton activity. Similarly, high-throughput sequencing of RT-PCR amplified bacterial 16S rRNA gene transcripts showed that active bacterioplankton community structure and diversity also changed in response to microgels. Alteromonadales and Rhodobacterales increased in abundance in response to TEP, suggesting that both bacterioplankton taxa utilize diatom-derived microgels. However, through assessing 13 C-labelled TEP uptake via RNA Stable Isotope Probing, we show that only the Alteromonadales (genus Alteromonas) assimilated the TEP carbon. This study adds utilization of diatom-derived TEP to the metabolic repertoire of the archetypal copiotrophic bacterioplankton Alteromonas, and indicates that the Rhodobacterales may utilize TEP for other purposes (e.g. attachment sites). © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

  6. The cryptochrome-photolyase protein family in diatoms.

    Science.gov (United States)

    König, Sarah; Juhas, Matthias; Jäger, Stefanie; Kottke, Tilman; Büchel, Claudia

    2017-10-01

    The cryptochrome - photolyase family (CPF) consists of homologous flavoproteins having completely different functions involving DNA repair, circadian rhythm and/or photoreception. From the original photolyases, working either as (6-4) or cyclobutane pyrimidine dimer photolyases, the animal- and plant-type cryptochromes, respectively, evolved and also the more intermediate DASH cryptochromes. Whereas animal cryptochromes work mostly in clock-related functions, plant cryptochromes are also directly involved in developmental processes such as hypocotyl elongation or flower induction. In diatoms, all types of cryptochromes and photolyases were predicted from genome sequences. However, up to now only two proteins have been characterised in more detail, CPF1 and CryP. CPF1 is related to animal-type cryptochromes, but works as a (6-4) photolyase in addition to having photoreceptor functions. It was shown to interact with the CLOCK:Bmal1 heterodimer in a heterologous system, and thus is probably involved in clock-related processes. Moreover, CPF1 directly influences transcription. The latter was also true for CryP, which is a cryptochrome distantly related to plant-type cryptochromes. In addition, CryP influences light-harvesting protein accumulation. For all diatom cryptochromes, down-stream signalling has to proceed via interaction partners different from the classical proteins involved in cryptochrome signalling in higher plants, because these candidates are missing in diatoms. Copyright © 2017 Elsevier GmbH. All rights reserved.

  7. Radiation damage in diatomic materials at high doses

    International Nuclear Information System (INIS)

    Hobbs, L.W.; Hughes, A.E.

    1975-10-01

    Radiation effects in diatomic materials can differ structurally from those in metals because of the need to take into account different displacement rates on the two sublattices and the inevitable stoichiometric implications; in most diatomic insulators the anion species has the greater displacement cross section. Anion point defect stabilisation in heavily-irradiated (0.1 to 10 dpa) diatomic insulators has been studied using radiolysis of alkali and alkaline earth halides. A temperatures > 0.3 Tsub(m), all anion defects are mobile and can aggregate. Aggregation of anion interstitials results in creation of perfect dislocation loops without the need for primary cation displacements; simultaneous formation of substitutional anion molecular centres provides the necessary cation interstitials. Aggregation of anion vacancies leads to formation of metallic inclusions of the cation species, in some cases in an ordered array, which is the analogue, on a single sublattice, to the void lattice in metals. Availability of sinks for both anion interstitials and anion vacancies yields defect growth kinetics similar to those observed during formation of voids in irradiated metals, and a very high level of damage (approximately 10%) can be sustained in the lattice. The width of the temperature region concerned is much narrower, however, due to the possibility of recombination of aggregated or re-emitted anion vacancies with mobile or dispersed anion molecular defects; the latter can also aggregate to form fluid anion molecular inclusions and so complete the decomposition of the solid into separate phases of its constituent elements. (author)

  8. Automated Diatom Classification (Part B: A Deep Learning Approach

    Directory of Open Access Journals (Sweden)

    Anibal Pedraza

    2017-05-01

    Full Text Available Diatoms, a kind of algae microorganisms with several species, are quite useful for water quality determination, one of the hottest topics in applied biology nowadays. At the same time, deep learning and convolutional neural networks (CNN are becoming an extensively used technique for image classification in a variety of problems. This paper approaches diatom classification with this technique, in order to demonstrate whether it is suitable for solving the classification problem. An extensive dataset was specifically collected (80 types, 100 samples/type for this study. The dataset covers different illumination conditions and it was computationally augmented to more than 160,000 samples. After that, CNNs were applied over datasets pre-processed with different image processing techniques. An overall accuracy of 99% is obtained for the 80-class problem and different kinds of images (brightfield, normalized. Results were compared to previous presented classification techniques with different number of samples. As far as the authors know, this is the first time that CNNs are applied to diatom classification.

  9. The bound fraction of young star clusters

    Science.gov (United States)

    Brinkmann, Nina; Banerjee, Sambaran; Motwani, Bhawna; Kroupa, Pavel

    2017-04-01

    Context. The residual gas within newly formed star clusters is expelled through stellar feedback on timescales ≲ 1 Myr. The subsequent expansion of the cluster results in an unbinding of a fraction of stars, before the remaining cluster members can re-virialize and form a surviving cluster. Aims: We investigate the bound fraction after gas expulsion as a function of initial cluster mass in stars Mecl and gauge the influence of primordial mass segregation, stellar evolution and the tidal field at solar distance. We also assess the impact of the star-formation efficiency ɛSFE and gas expulsion velocity vg. Methods: We perform N-body simulations using Sverre Aarseth's NBODY7 code, starting with compact clusters in their embedded phase and approximate the gas expulsion by means of an exponentially depleting external gravitational field. We follow the process of re-virialization through detailed monitoring of different Lagrange radii over several Myr, examining initial half-mass radii of 0.1 pc, 0.3 pc and 0.5 pc and Mecl usually ranging from 5 × 103M⊙ to 5 × 104M⊙. Results: The strong impact of the relation between the gas expulsion timescale and the crossing time means that clusters with the same initial core density can have very different bound fractions. The adopted ɛSFE = 0.33 in the cluster volume results in a distinct sensitivity to vg over a wide mass range, while a variation of ɛSFE can make the cluster robust to the rapidly decreasing external potential. We confirm that primordial mass segregation leads to a smaller bound fraction, its influence possibly decreasing with mass. Stellar evolution has a higher impact on lower mass clusters, but heating through dynamical friction could expand the cluster to a similar extent. The examined clusters expand well within their tidal radii and would survive gas expulsion even in a strong tidal field.

  10. Wavelength and orientation dependent capture of light by diatom frustule nanostructures

    OpenAIRE

    Romann, Julien Clement; Valmalette, Jean-Christophe; Chauton, Matilde Skogen; Tranell, Gabriella; Einarsrud, Mari-Ann; Vadstein, Olav

    2015-01-01

    The ecological success of diatoms is emphasized by regular blooms of many different species in all aquatic systems, but the reason behind their success is not fully understood. A special feature of the diatom cell is the frustule, a nano-patterned cell encasement made of amorphous biosilica. The optical properties of a cleaned single valve (one half of a frustule) from the diatom Coscinodiscus centraliswere studied using confocal micro-spectroscopy. A photonic crystal function...

  11. Comparison of diatom records of the Heinrich event 1 in the Western North Atlantic

    International Nuclear Information System (INIS)

    Gil, Isabelle M; Abrantes, Fatima G; Keigwin, Lloyd D

    2010-01-01

    Heinrich event 1 (H1) is a climate event resulting from the release into the North Atlantic of a huge volume of sea ice and icebergs from the northern hemisphere ice sheets. We present here high-resolution diatom records from the Bermuda Rise (Sargasso Sea) and the Laurentian Fan (South of Newfoundland) to assess its impacts on North Atlantic surface circulation and its timing. The event is composed of three phases: the two first correspond to major pulses of Ice Rafted Debris (IRD) and the third phase relates to its immediate aftermath. At both sites, diatom abundances start to rise at 16.8 ka. This increase is marked by diatom species thriving in cold environments over the Laurentian Fan, while brackish and fresh water diatom species characterize this increase over the Bermuda Rise. This last record implies icebergs migration to subtropical latitudes and nutrient-rich meltwater to support such diatom productivity. During the second phase of the event, both sites record maximum diatom abundances, when sea ice conditions are dominant over the Laurentian Fan and the contribution of brackish-fresh water diatoms culminates over the Bermuda Rise. The persistence of lower salinity related diatom species over the Bermuda Rise suggests a continuous injection of cold fresh water by cold-core rings, as observed nowadays. The last phase witnesses the persistence of low salinity water over the Laurentian Fan, while a decrease towards the disappearance of diatoms in the sediment occurs over the Bermuda Rise. Regarding the relationship between IRD and diatom abundance, it appears that a critical amount of icebergs is necessary to stimulate diatom productivity. The disturbances induced by H1 appear to end ∼14.6 ka over the Bermuda Rise, while over the Laurentian Fan, the high diatom production persists until 14.1 ka and the salinity anomaly until 13.8 ka.

  12. Antigen Binding and Site-Directed Labeling of Biosilica-Immobilized Fusion Proteins Expressed in Diatoms

    Energy Technology Data Exchange (ETDEWEB)

    Ford, Nicole R.; Hecht, Karen A.; Hu, Dehong; Orr, Galya; Xiong, Yijia; Squier, Thomas; Rorrer, Gregory L.; Roesijadi, Guritno

    2016-01-08

    The diatom Thalassiosira pseudonana was genetically modified to express biosilica-targeted fusion proteins incorporating a tetracysteine tag for site-directed labeling with biarsenical affinity probes and either EGFP or single chain antibody to test colocalization of probes with the EGFP-tagged recombinant protein or binding of biosilica-immobilized antibodies to large and small molecule antigens, respectively. Site-directed labeling with the biarsenical probes demonstrated colocalization with EGFP-encoded proteins in nascent and mature biosilica, supporting their use in studying biosilica maturation. Isolated biosilica transformed with a single chain antibody against either the Bacillus anthracis surface layer protein EA1 or small molecule explosive trinitrotoluene (TNT) effectively bound the respective antigens. A marked increase in fluorescence lifetime of the TNT surrogate Alexa Fluor 555-trinitrobenzene reflected the high binding specificity of the transformed isolated biosilica. These results demonstrated the potential use of biosilica-immobilized single chain antibodies as binders for large and small molecule antigens in sensing and therapeutics.

  13. Photodissociation from a manifold of rovibrational states and free-free absorption by a diatomic molecule

    International Nuclear Information System (INIS)

    Lebedev, V S; Presnyakov, L P

    2002-01-01

    An analytical approach for the description of photoabsorption by a gas or plasma medium containing atomic and molecular components in thermodynamic equilibrium is developed. Continuous absorption of radiation is due to the photodissociation of a diatomic molecule from a manifold of excited rovibrational states and free-free transitions between the two electronic terms of a quasimolecule temporarily formed during a collision of atomic particles. The formulae are obtained for individual photodissociation cross sections from a given rovibrational state and for the Boltzmann-averaged cross section. Particular attention is paid to the derivation of a general analytical expression for the total absorption coefficient including the integral contribution of bound-free and free-free radiative transitions. The consideration is based on the theory of nonadiabatic transitions combined with the approximation of a quasicontinuum for rovibrational states. The theory is applied to the investigation of photoabsorption by the H 2 + ion in the IR, visible and UV spectral regions. It is shown that our results are in good agreement with available ab initio quantal calculations of photodissociation cross sections and with semiclassical calculations of absorption coefficients. Special attention is paid to the investigation of the relative contributions of the H 2 + and H - ions to the total absorption in a wide range of wavelengths and temperatures

  14. Diatom Attachment at Aquatic Interfaces: Molecular Interactions, Mechanisms, and Physiology of Adhesion

    National Research Council Canada - National Science Library

    Gretz, Michael

    1997-01-01

    .... those more hydrophobic and that bacterial 'preconditioning' has variable effects on adhesion; (3) developed methodology for mass culture of fouling diatoms and isolation of adhesive components; (4...

  15. A simple DNA coprecipitation method for the detection of diatoms in heart blood.

    Science.gov (United States)

    Seo, Yasuhisa; Sato, Shingo; Kuroki, Kohji; Kishida, Tetsuko

    2013-10-10

    We developed a method for detecting and enumerating diatoms in the heart blood of drowning victims and evaluate its utility for diagnosing death by drowning. For purification of diatoms from blood, the DNA binding ability of the diatom frustule in the presence of a chaotropic agent was utilized. The procedure is basically the same as the commonly used method for DNA purification from blood using Proteinase K treatment and denaturation by a chaotropic agent. DNA adsorbed to the diatom (DNA/diatom complex) is recovered by ethanol precipitation, and the DNA is subsequently digested using DNase. Purified diatoms could be clearly observed under a microscope. Diatoms spiked in the blood of non-drowned cadavers (n=15) were well recovered, and were detected in heart blood from all drowning victims (n=22). The mean number of diatoms found in 5 ml of blood from drowning victims was 7.8±5.8 (mean±SD), and the number of diatoms detected in the blood of the left ventricle (6.1±5.8) was approximately two times higher than that of the right ventricle (3.0±2.7, p<0.05). These results suggest that this simple and safe method can become an effective tool for diagnosing the cause of death as drowning. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

  16. How-to-Do-It: Diatoms: The Ignored Alga in High School Biology.

    Science.gov (United States)

    Hungerford, James J.

    1988-01-01

    Provides historical background, descriptions, uses and basis for identification of diatoms. Explains collection, dry-mount cleaning, and preparation procedures of the algae. Cites additional resources. (RT)

  17. Adaptive significance of phytoplankton stickiness with emphasis on the diatom Skeletonema costatum

    DEFF Research Database (Denmark)

    Hansen, J.L.S.; Timm, U.; Kiørboe, Thomas

    1995-01-01

    Diatom aggregate formation was analyzed using coagulation theory. Population dynamics models show that coagulation has an important impact on species succession during diatom blooms. When different species collide and form mixed aggregates this process causes interspecific interference competition......-most pronounced in eutrophic and hydro-graphically isolated environments. The sticking properties of the diatom Skeletonema costatum are discussed in an evolutionary context; we suggest that mutual coagulation increases the abundance of S. costatum relative to other diatom species in coastal areas. The model...

  18. Dissociation dynamics of diatomic molecules in intense fields

    Science.gov (United States)

    Magrakvelidze, Maia

    We study the dynamics of diatomic molecules (dimers) in intense IR and XUV laser fields theoretically and compare the results with measured data in collaboration with different experimental groups worldwide. The first three chapters of the thesis cover the introduction and the background on solving time-independent and time-dependent Schrodinger equation. The numerical results in this thesis are presented in four chapters, three of which are focused on diatomic molecules in IR fields. The last one concentrates on diatomic molecules in XUV pulses. The study of nuclear dynamics of H2 or D2 molecules in IR pulses is given in Chapter 4. First, we investigate the optimal laser parameters for observing field-induced bond softening and bond hardening in D2+. Next, the nuclear dynamics of H2 + molecular ions in intense laser fields are investigated by analyzing their fragment kinetic-energy release (KER) spectra as a function of the pump-probe delay τ Lastly, the electron localization is studied for long circularly polarized laser pulses. Chapter 5 covers the dissociation dynamics of O2+ in an IR laser field. The fragment KER spectra are analyzed as a function of the pump-probe delay τ Within the Born-Oppenheimer approximation, we calculate ab-initio adiabatic potential-energy curves and their electric dipole couplings, using the quantum chemistry code GAMESS. In Chapter 6, the dissociation dynamics of the noble gas dimer ions He 2+, Ne2+, Ar2 +, Kr2+, and Xe2 + is investigated in ultrashort pump and probe laser pulses of different wavelengths. We observe a striking "delay gap" in the pump-probe-delay-dependent KER spectrum only if the probe-pulse wavelength exceeds the pump-pulse wavelength. Comparing pump-probe-pulse-delay dependent KER spectra for different noble gas dimer cations, we quantitatively discuss quantum-mechanical versus classical aspects of the nuclear vibrational motion as a function of the nuclear mass. Chapter 7 focuses on diatomic molecules in XUV

  19. Complex dynamics in diatomic molecules. Part II: Quantum trajectories

    International Nuclear Information System (INIS)

    Yang, C.-D.; Weng, H.-J.

    2008-01-01

    The second part of this paper deals with quantum trajectories in diatomic molecules, which has not been considered before in the literature. Morse potential serves as a more accurate function than a simple harmonic oscillator for illustrating a realistic picture about the vibration of diatomic molecules. However, if we determine molecular dynamics by integrating the classical force equations derived from a Morse potential, we will find that the resulting trajectories do not consist with the probabilistic prediction of quantum mechanics. On the other hand, the quantum trajectory determined by Bohmian mechanics [Bohm D. A suggested interpretation of the quantum theory in terms of hidden variable. Phys. Rev. 1952;85:166-179] leads to the conclusion that a diatomic molecule is motionless in all its vibrational eigen-states, which also contradicts probabilistic prediction of quantum mechanics. In this paper, we point out that the quantum trajectory of a diatomic molecule completely consistent with quantum mechanics does exist and can be solved from the quantum Hamilton equations of motion derived in Part I, which is based on a complex-space formulation of fractal spacetime [El Naschie MS. A review of E-Infinity theory and the mass spectrum of high energy particle physics. Chaos, Solitons and Fractals 2004;19:209-36; El Naschie MS. E-Infinity theory - some recent results and new interpretations. Chaos, Solitons and Fractals 2006;29:845-853; El Naschie MS. The concepts of E-infinity. An elementary introduction to the cantorian-fractal theory of quantum physics. Chaos, Solitons and Fractals 2004;22:495-511; El Naschie MS. SU(5) grand unification in a transfinite form. Chaos, Solitons and Fractals 2007;32:370-374; Nottale L. Fractal space-time and microphysics: towards a theory of scale relativity. Singapore: World Scientific; 1993; Ord G. Fractal space time and the statistical mechanics of random works. Chaos, Soiltons and Fractals 1996;7:821-843] approach to quantum

  20. Establishing the Ecological Status of Mining-Impacted Freshwaters from Abrud River Catchment Area Using Benthic Diatom Communities (Ros, ia MontanÄă, Romania)

    Science.gov (United States)

    Olenici, Adriana; Baciu, Calin; Momeu, Laura; Cozma, Alexandra; Brahaita, Dorian; Pop, Cristian; Lazar, Laura; Popita, Gabriela; Teodosiu, Gabriela

    2015-04-01

    Keywords: diatom communities, indicator species, mine waters, water quality, Romania. Diatoms are a very distinct group of algae, identifiable under the light microscope by their yellow - brown coloration and by the presence of a thick silica cell wall. The potential for freshwater organisms to reflect changes in environmental conditions was first noted by Kolenati (1848) and Cohn (1853), who observed that biota in polluted waters were different from those in non-polluted situations. Diatoms are widely used to monitor river pollution because they are sensitive to water chemistry, especially to ionic content, pH, dissolved organic matter and nutrients. Wide geographic distribution and well-studied ecology of most diatom species are mentioned as major advantages of using diatoms as indicator organisms. At the same time water quality has begun to deteriorate increasingly, mainly as a result of the physical, chemical and bacteriological alterations, and the aquatic ecosystems are evermore affected by various types of pollution, the anthropic one being almost always included. A good example is Abrud River and its main tributaries (Roșia Montană and surrounding areas, Romania), which has suffered along the years because of the mining waters discharge. In this context, this study presents data on benthic diatom communities from the Abrud River catchment area. Sixteen sites have been sampled seasonal and the best represented diatom genera were Navicula, Nitzschia, Cymbella, Gomphonema, Achnantes, Surirella and Fragilaria. Qualitatively, the number of diatom species exhibited significant variation among sampling sites, also suggesting seasonal dynamics. For instance, in some sampling sites, algal assemblages were absent, as diatom communities were strongly affected by acid mine waters, released from old mining works and waste rocks depots. Some dominant taxa have been observed as well, suggesting critical saprobic levels of the Abrud River and some of its tributaries. The

  1. Simulation bounds for system availability

    International Nuclear Information System (INIS)

    Tietjen, G.L.; Waller, R.A.

    1976-01-01

    System availability is a dominant factor in the practicality of nuclear power electrical generating plants. A proposed model for obtaining either lower bounds or interval estimates on availability uses observed data on ''n'' failure-to-repair cycles of the system to estimate the parameters in the time-to-failure and time-to-repair models. These estimates are then used in simulating failure/repair cycles of the system. The availability estimate is obtained for each of 5000 samples of ''n'' failure/repair cycles to form a distribution of estimates. Specific percentile points of those simulated distributions are selected as lower simulation bounds or simulation interval bounds for the system availability. The method is illustrated with operational data from two nuclear plants for which an exponential time-to-failure and a lognormal time-to-repair are assumed

  2. Testing strong interaction theories

    International Nuclear Information System (INIS)

    Ellis, J.

    1979-01-01

    The author discusses possible tests of the current theories of the strong interaction, in particular, quantum chromodynamics. High energy e + e - interactions should provide an excellent means of studying the strong force. (W.D.L.)

  3. Evidence for middle Eocene Arctic sea ice from diatoms and ice-rafted debris.

    Science.gov (United States)

    Stickley, Catherine E; St John, Kristen; Koç, Nalân; Jordan, Richard W; Passchier, Sandra; Pearce, Richard B; Kearns, Lance E

    2009-07-16

    Oceanic sediments from long cores drilled on the Lomonosov ridge, in the central Arctic, contain ice-rafted debris (IRD) back to the middle Eocene epoch, prompting recent suggestions that ice appeared in the Arctic about 46 million years (Myr) ago. However, because IRD can be transported by icebergs (derived from land-based ice) and also by sea ice, IRD records are restricted to providing a history of general ice-rafting only. It is critical to differentiate sea ice from glacial (land-based) ice as climate feedback mechanisms vary and global impacts differ between these systems: sea ice directly affects ocean-atmosphere exchanges, whereas land-based ice affects sea level and consequently ocean acidity. An earlier report assumed that sea ice was prevalent in the middle Eocene Arctic on the basis of IRD, and although somewhat preliminary supportive evidence exists, these data are neither comprehensive nor quantified. Here we show the presence of middle Eocene Arctic sea ice from an extraordinary abundance of a group of sea-ice-dependent fossil diatoms (Synedropsis spp.). Analysis of quartz grain textural characteristics further supports sea ice as the dominant transporter of IRD at this time. Together with new information on cosmopolitan diatoms and existing IRD records, our data strongly suggest a two-phase establishment of sea ice: initial episodic formation in marginal shelf areas approximately 47.5 Myr ago, followed approximately 0.5 Myr later by the onset of seasonally paced sea-ice formation in offshore areas of the central Arctic. Our data establish a 2-Myr record of sea ice, documenting the transition from a warm, ice-free environment to one dominated by winter sea ice at the start of the middle Eocene climatic cooling phase.

  4. Genotypic diversity and differentiation among populations of two benthic freshwater diatoms as revealed by microsatellites.

    Science.gov (United States)

    Vanormelingen, Pieter; Evans, Katharine M; Mann, David G; Lance, Stacey; Debeer, Ann-Eline; D'Hondt, Sofie; Verstraete, Tine; De Meester, Luc; Vyverman, Wim

    2015-09-01

    Given their large population sizes and presumed high dispersal capacity, protists are expected to exhibit homogeneous population structure over large spatial scales. On the other hand, the fragmented and short-lived nature of the lentic freshwater habitats that many protists inhabit promotes strong population differentiation. We used microsatellites in two benthic freshwater diatoms, Eunotia bilunaris 'robust' and Sellaphora capitata, sampled from within a pond and connected ponds, through isolated ponds from the same region to western Europe to determine the spatial scale at which differentiation appears. Because periods of low genotypic diversity contribute to population differentiation, we also assessed genotypic diversity. While genotypic diversity was very high to maximal in most samples of both species, some had a markedly lower diversity, with up to half (Eunotia) and over 90% (Sellaphora) of the strains having the same multilocus genotype. Population differentiation showed an isolation-by-distance pattern with very low standardized FST values between samples from the same or connected ponds but high values between isolated ponds, even when situated in the same region. Partial rbcL sequences in Eunotia were consistent with this pattern as isolated ponds in the same region could differ widely in haplotype composition. Populations identified by Structure corresponded to the source ponds, confirming that 'pond' is the main factor structuring these populations. We conclude that freshwater benthic diatom populations are highly fragmented on a regional scale, reflecting either less dispersal than is often assumed or reduced establishment success of immigrants, so that dispersal does not translate into gene flow. © 2015 John Wiley & Sons Ltd.

  5. Bounds for nonlocality distillation protocols

    International Nuclear Information System (INIS)

    Forster, Manuel

    2011-01-01

    Nonlocality can be quantified by the violation of a Bell inequality. Since this violation may be amplified by local operations, an alternative measure has been proposed--distillable nonlocality. The alternative measure is difficult to calculate exactly due to the double exponential growth of the parameter space. In this paper, we give a way to bound the distillable nonlocality of a resource by the solutions to a related optimization problem. Our upper bounds are exponentially easier to compute than the exact value and are shown to be meaningful in general and tight in some cases.

  6. Space-bounded communication complexity

    DEFF Research Database (Denmark)

    Brody, Joshua Eric; Chen, Shiteng; Papakonstantinou, Periklis A.

    2013-01-01

    In the past thirty years, Communication Complexity has emerged as a foundational tool to proving lower bounds in many areas of computer science. Its power comes from its generality, but this generality comes at a price---no superlinear communication lower bound is possible, since a player may...... communicate his entire input. However, what if the players are limited in their ability to recall parts of their interaction? We introduce memory models for 2-party communication complexity. Our general model is as follows: two computationally unrestricted players, Alice and Bob, each have s(n) bits of memory...

  7. Bound entanglement and local realism

    International Nuclear Information System (INIS)

    Kaszlikowski, Dagomir; Zukowski, Marek; Gnacinski, Piotr

    2002-01-01

    We show using a numerical approach, which gives necessary and sufficient conditions for the existence of local realism, that the bound entangled state presented in Bennett et al. [Phys. Rev. Lett. 82, 5385 (1999)] admits a local and realistic description. We also find the lowest possible amount of some appropriate entangled state that must be ad-mixed to the bound entangled state so that the resulting density operator has no local and realistic description and as such can be useful in quantum communication and quantum computation

  8. Market access through bound tariffs

    DEFF Research Database (Denmark)

    Sala, Davide; Yalcin, Erdal; Schröder, Philipp

    2010-01-01

    WTO negotiations deal predominantly with bound - besides applied - tariff rates. But, how can reductions in tariffs ceilings, i.e. tariff rates that no exporter may ever actually be confronted with, generate market access? The answer to this question relates to the effects of tariff bindings...... on the risk that exporters face in destination markets. The present paper formalizes the underlying interaction of risk, fixed export costs and firms' market entry decisions based on techniques known from the real options literature; doing so we highlight the important role of bound tariffs at the extensive...

  9. Analysis of pressure variation of fluid in bounded circular reservoirs ...

    African Journals Online (AJOL)

    The result obtained at the wellbore was compared with the results obtained by Van Everdigen and Hurst. It was shown that there was a strong positive correlation between the results. Keywords: Bounded circular reservoir, constant terminal rate, dimensionless variables, diffusivity equation, and Crank-Nicholson scheme.

  10. Relativistic shifts of bound negative-muon precession frequencies

    International Nuclear Information System (INIS)

    Brewer, J.H.; Froese, A. M.; Fryer, B.A.; Ghandi, K.

    2005-01-01

    High-field negative-muon spin precession experiments have been performed using a backward-muon beam with substantial transverse spin polarization, facilitating high-precision measurements of the magnetogyric ratio of negative muons bound to nuclei in the ground states of muonic atoms. These results may provide a testing ground for quantum electrodynamics in very strong electromagnetic fields

  11. All New Faces of Diatoms: Potential Source of Nanomaterials and Beyond

    Directory of Open Access Journals (Sweden)

    Meerambika Mishra

    2017-07-01

    Full Text Available Nature’s silicon marvel, the diatoms have lately astounded the scientific community with its intricate designs and lasting durability. Diatoms are a major group of phytoplanktons involved in the biogeochemical cycling of silica and are virtually inherent in every environment ranging from water to ice to soil. The usage of diatoms has proved prudently cost effective and its handling neither requires costly materials nor sophisticated instruments. Diatoms can easily be acquired from the environment, their culture requires ambient condition and does not involve any costly media or expensive instruments, besides, they can be transported in small quantities and proliferated to a desirable confluence from that scratch, thus are excellent cost effective industrial raw material. Naturally occurring diatom frustules are a source of nanomaterials. Their silica bio-shells have raised curiosity among nanotechnologists who hope that diatoms will facilitate tailoring minuscule structures which are beyond the capabilities of material scientists. Additionally, there is a colossal diversity in the dimensions of diatoms as the frustule shape differs from species to species; this provides a scope for the choice of a particular species of diatom to be tailored to an exacting requisite, thus paving the way to create desired three dimensional nanocomposites. The present article explores the use of diatoms in various arenas of science, may it be in nanotechnology, biotechnology, environmental science, biophysics or biochemistry and summarizes facets of diatom biology under one umbrella. Special emphasis has been given to biosilicification, biomineralization and use of diatoms as nanomaterials’, drug delivery vehicles, optical and immune-biosensors, filters, immunodiagnostics, aquaculture feeds, lab-on-a-chip, metabolites, and biofuels.

  12. Automated Diatom Analysis Applied to Traditional Light Microscopy: A Proof-of-Concept Study

    Science.gov (United States)

    Little, Z. H. L.; Bishop, I.; Spaulding, S. A.; Nelson, H.; Mahoney, C.

    2017-12-01

    Diatom identification and enumeration by high resolution light microscopy is required for many areas of research and water quality assessment. Such analyses, however, are both expertise and labor-intensive. These challenges motivate the need for an automated process to efficiently and accurately identify and enumerate diatoms. Improvements in particle analysis software have increased the likelihood that diatom enumeration can be automated. VisualSpreadsheet software provides a possible solution for automated particle analysis of high-resolution light microscope diatom images. We applied the software, independent of its complementary FlowCam hardware, to automated analysis of light microscope images containing diatoms. Through numerous trials, we arrived at threshold settings to correctly segment 67% of the total possible diatom valves and fragments from broad fields of view. (183 light microscope images were examined containing 255 diatom particles. Of the 255 diatom particles present, 216 diatoms valves and fragments of valves were processed, with 170 properly analyzed and focused upon by the software). Manual analysis of the images yielded 255 particles in 400 seconds, whereas the software yielded a total of 216 particles in 68 seconds, thus highlighting that the software has an approximate five-fold efficiency advantage in particle analysis time. As in past efforts, incomplete or incorrect recognition was found for images with multiple valves in contact or valves with little contrast. The software has potential to be an effective tool in assisting taxonomists with diatom enumeration by completing a large portion of analyses. Benefits and limitations of the approach are presented to allow for development of future work in image analysis and automated enumeration of traditional light microscope images containing diatoms.

  13. All New Faces of Diatoms: Potential Source of Nanomaterials and Beyond

    Science.gov (United States)

    Mishra, Meerambika; Arukha, Ananta P.; Bashir, Tufail; Yadav, Dhananjay; Prasad, G. B. K. S.

    2017-01-01

    Nature’s silicon marvel, the diatoms have lately astounded the scientific community with its intricate designs and lasting durability. Diatoms are a major group of phytoplanktons involved in the biogeochemical cycling of silica and are virtually inherent in every environment ranging from water to ice to soil. The usage of diatoms has proved prudently cost effective and its handling neither requires costly materials nor sophisticated instruments. Diatoms can easily be acquired from the environment, their culture requires ambient condition and does not involve any costly media or expensive instruments, besides, they can be transported in small quantities and proliferated to a desirable confluence from that scratch, thus are excellent cost effective industrial raw material. Naturally occurring diatom frustules are a source of nanomaterials. Their silica bio-shells have raised curiosity among nanotechnologists who hope that diatoms will facilitate tailoring minuscule structures which are beyond the capabilities of material scientists. Additionally, there is a colossal diversity in the dimensions of diatoms as the frustule shape differs from species to species; this provides a scope for the choice of a particular species of diatom to be tailored to an exacting requisite, thus paving the way to create desired three dimensional nanocomposites. The present article explores the use of diatoms in various arenas of science, may it be in nanotechnology, biotechnology, environmental science, biophysics or biochemistry and summarizes facets of diatom biology under one umbrella. Special emphasis has been given to biosilicification, biomineralization and use of diatoms as nanomaterials’, drug delivery vehicles, optical and immune-biosensors, filters, immunodiagnostics, aquaculture feeds, lab-on-a-chip, metabolites, and biofuels. PMID:28725218

  14. P2-16: Dual-Bound Model and the Role of Time Bound in Perceptual Decision Making

    Directory of Open Access Journals (Sweden)

    Daeseob Lim

    2012-10-01

    Full Text Available The diffusion model (DM encapsulates the dynamics of perceptual decision within a ‘diffusion field’ that is defined by a basis with sensory-evidence (SE and time vectors. At the core of the DM, it assumes that a decision is not made until an evidence particle drifts in the diffusion field and eventually hits one of the two pre-fixed bounds defined in the SE axis. This assumption dictates when and which choice is made by referring to when and which bound will be hit by the evidence particle. What if urgency pressures the decision system to make a choice even when the evidence particle has yet hit the SE bound? Previous modeling attempts at coping with time pressure, despite differences in detail, all manipulated the coordinate of SE bounds. Here, we offer a novel solution by adopting another bound on the time axis. This ‘dual-bound’ model (DBM posits that decisions can also be made when the evidence particle hits a time bound, which is determined on a trial-by-trial basis by a ‘perceived time interval’ – how long the system can stay in the ‘diffusion’ field. The classic single-bound model (SBM exhibited systematic errors in predicting both the reaction time distributions and the time-varying bias in choice. Those errors were not corrected by previously proposed variants of the SBM until the time bound was introduced. The validity of the DBM was further supported by the strong across-individual correlation between observed precision of interval timing and the predicted trial-by-trial variability of the time bound.

  15. Diatom Communities and Metrics as Indicators of Urbanization Effects on Streams and Potential Moderation by Landscape Green Infrastructure

    Science.gov (United States)

    Diatoms are very useful and important indicators of anthropogenic impacts on streams because they are the foundation of primary production and are responsive to nutrients, conductivity, and habitat conditions. We characterized relationships of diatom assemblages with water chemis...

  16. Growth inhibition of fouling bacteria and diatoms by extract of terrestrial plant, @iDerris scandens@@ (Dicotyledonae:Leguminocae)

    Digital Repository Service at National Institute of Oceanography (India)

    Sawant, S.S.; Sonak, S.; Garg, A.

    Methanol extract of terrestrial plant, @iDerris scandens@@ Benth, was found to inhibit growth of four diatoms and 7 bacterial species of fouling community. The concentrations required to bring about 100% inhibition of growth of the diatoms ranged...

  17. Growth inhibition of fouling bacteria and diatoms by extract of terrestrial plant, Derris scandens (Dicotyledonae:Leguminocae)

    Digital Repository Service at National Institute of Oceanography (India)

    Sawant, S.S.; Sonak; Garg, A.

    Methanol extract of terrestrial plant, Derris scandens Benth, was found to inhibit growth of four diatoms and 7 bacterial species of fouling community. The concentrations required to bring about 100% inhibition of growth of the diatoms ranged...

  18. Entropy Bounds and Field Equations

    Directory of Open Access Journals (Sweden)

    Alessandro Pesci

    2015-08-01

    Full Text Available For general metric theories of gravity, we compare the approach that describes/derives the field equations of gravity as a thermodynamic identity with the one which looks at them from entropy bounds. The comparison is made through the consideration of the matter entropy flux across (Rindler horizons, studied by making use of the notion of a limiting thermodynamic scale l* of matter, previously introduced in the context of entropy bounds. In doing this: (i a bound for the entropy of any lump of matter with a given energy-momentum tensor Tab is considered, in terms of a quantity, which is independent of the theory of gravity that we use; this quantity is the variation of the Clausius entropy of a suitable horizon when the element of matter crosses it; (ii by making use of the equations of motion of the theory, the same quantity is then expressed as the variation of Wald’s entropy of that horizon (and this leads to a generalized form of the generalized covariant entropy bound, applicable to general diffeomorphism-invariant theories of gravity; and (iii a notion of l* for horizons, as well as an expression for it, is given.

  19. Bounded Densities and Their Derivatives

    DEFF Research Database (Denmark)

    Kozine, Igor; Krymsky, V.

    2009-01-01

    This paper describes how one can compute interval-valued statistical measures given limited information about the underlying distribution. The particular focus is on a bounded derivative of a probability density function and its combination with other available statistical evidence for computing ...

  20. Semiclassical bounds in magnetic bottles

    Czech Academy of Sciences Publication Activity Database

    Barseghyan, Diana; Exner, Pavel; Kovařík, H.; Weidl, T.

    2016-01-01

    Roč. 28, č. 1 (2016), s. 1650002 ISSN 0129-055X R&D Projects: GA ČR(CZ) GA14-06818S Institutional support: RVO:61389005 Keywords : magnetic Laplacian * discrete spectrum * eigenvalue bounds Subject RIV: BE - Theoretical Physics Impact factor: 1.426, year: 2016

  1. Positivity bounds for Sivers functions

    International Nuclear Information System (INIS)

    Kang Zhongbo; Soffer, Jacques

    2011-01-01

    We generalize a positivity constraint derived initially for parity-conserving processes to the parity-violating ones, and use it to derive non-trivial bounds on several Sivers functions, entering in the theoretical description of single spin asymmetry for various processes.

  2. Moderate deviations for bounded subsequences

    Directory of Open Access Journals (Sweden)

    George Stoica

    2006-01-01

    Full Text Available We study Davis' series of moderate deviations probabilities for Lp-bounded sequences of random variables (p>2. A certain subseries therein is convergent for the same range of parameters as in the case of martingale difference or i.i.d. sequences.

  3. Pieter Paul Rubens, "Prometheus Bound."

    Science.gov (United States)

    Shoemaker, Marla K.

    1986-01-01

    Provides a full-color reproduction of Pieter Paul Rubens' painting, "Prometheus Bound," and a lesson plan for using it with students in grades 10 through 12. The goal of the lesson is to introduce students to the techniques of design and execution used by Rubens. (JDH)

  4. Upward Bound: In the Beginning.

    Science.gov (United States)

    Groutt, John; Hill, Calvin

    2001-01-01

    Describes the early history of the Upward Bound program, including the role of President Johnson's vision, the Task Force on Poverty, the Office of Economic Opportunity, and Community Action Programs; influences on the development of the program; establishment of the program's administrative structure; pilot programs; and early problems leading to…

  5. A Functional Calculus for Quotient Bounded Operators

    Directory of Open Access Journals (Sweden)

    Sorin Mirel Stoian

    2006-12-01

    Full Text Available If (X, P is a sequentially locally convex space, then a quotient bounded operator T beloging to QP is regular (in the sense of Waelbroeck if and only if it is a bounded element (in the sense of Allan of algebra QP. The classic functional calculus for bounded operators on Banach space is generalized for bounded elements of algebra QP.

  6. Action Spectrum of Photoinhibition in the Diatom Phaeodactylum tricornutum.

    Science.gov (United States)

    Havurinne, Vesa; Tyystjärvi, Esa

    2017-12-01

    Light-dependent electron transfer is necessary for photosynthesis, but light also damages PSII. Light-induced damage to PSII is called photoinhibition, and the damaging reactions of photoinhibition are still under debate. Diatoms possess an exotic combination of light-harvesting pigments, Chls a/c and fucoxanthin, making them an interesting platform for studying the photoreceptors of photoinhibition. We first confirmed the direct proportionality of photoinhibition to the photon flux density of incident light in the diatom Phaeodactylum tricornutum. Phaeodactylum is known for its efficient non-photochemical quenching, and the effect of this photoprotective mechanism on photoinhibition was tested. Photoinhibition proceeded essentially at the same rate in blue-light-grown Phaeodactylum cells that are capable of non-photochemical quenching and in red-light-grown, non-photochemical quenching-deficient cells. To obtain more insight into how the pigment composition of diatoms affects photoinhibition, we measured the action spectrum of photoinhibition in Phaeodactylum. In visible light, the action spectrum resembled the absorption spectrum of Phaeodactylum, and UV radiation caused much more photoinhibition than visible light. Comparison of the action spectrum of photoinhibition with the absorption spectrum and the excitation spectrum of 77 K PSII fluorescence emission confirmed that photosynthetic pigments are involved in photoinhibition, but the photoinhibitory efficiency of red light is weak, suggesting that the role of light-harvesting pigments as light receptors of photoinhibition is secondary. Finally, we compared photoinhibition in Phaeodactylum with that in other photosynthetic organisms, and our data indicate that the PSII reaction centers of Phaeodactylum are not particularly well protected against the primary damage of photoinhibition. © The Author 2017. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights

  7. Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

    Energy Technology Data Exchange (ETDEWEB)

    Thi Thuy Duong [Institute of Environmental Technology, Vietnamese Academy of Science and Technology, 18 Hoang Quoc Viet Road, Cau Giay, Hanoi (Viet Nam); Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: duongthuy0712@yahoo.com; Morin, Soizic [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Herlory, Olivier [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France); Feurtet-Mazel, Agnes [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)], E-mail: a.feurtet-mazel@epoc.u-bordeaux1.fr; Coste, Michel [Cemagref, UR REBX, 50 avenue de Verdun, F-33612 Cestas cedex (France); Boudou, Alain [Universite de Bordeaux 1, CNRS, UMR 5805 EPOC, Place du Dr Peyneau, 33120 Arcachon (France)

    2008-10-20

    The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems.

  8. Contribution to the Study of the flora diatomic Nahr Yahfufah (Lebanon)

    International Nuclear Information System (INIS)

    SLIM, K.; ALOUF, N.

    1984-01-01

    Contribution to the study of Diatomic flora on Nahr Yahfufah Lebanon. From October 1980 to June 1982 a hydrobiologic study has taken place on the river of Yahfufah situated to the west of anti Lebanon. From the diatomic population 52 species and varieties were designated. Further more the physico-chemical parameters were followed and studied. (author).

  9. Impact of marine influence and cultivation on the diatom flora of ...

    African Journals Online (AJOL)

    During a limnological and palaeolimnological study of the western part of the Great Coast of Senegal, an analysis of diatoms was carried out in Thiaroye Pond in the suburbs of Dakar. Current diatom flora in the water and on floating plants, and subfossil flora in two cores were sampled in 1996 and 2003. A total of 104 ...

  10. Long-term pigment dynamics and diatom survival in dark sediment

    NARCIS (Netherlands)

    Veuger, B.; Van Oevelen, D.

    2011-01-01

    In order to investigate survival of diatoms and long-term pigment dynamics in dark sediment, we incubated samples of homogenized, sieved, tidal-flat sediment for 1 yr in darkness. Microscopic observations revealed that some diatoms survived the full year in darkness and retained their pigments.

  11. Further contribution to the diatom flora of sewage enriched waters in southern Africa

    CSIR Research Space (South Africa)

    Schoeman, FR

    1972-01-01

    Full Text Available The systematics and autecology of the diatoms observed in an algal sample from a maturation pond of the Walvis Bay (south west African coast) sewage works are discussed. Fourteen diatoms species are recorded. A new specie, Amphora subacutiuscula...

  12. Identification automatique des diatomées de la Merja fouarate : Une ...

    African Journals Online (AJOL)

    Cependant les recherches continuent et s'appuient fortement sur les retombées de l'Intelligence artificielle. Mots clés : Diatomées, actuel, identification automatique, traitement numérique de l'image, morphologie mathématique, Fouarate, Kenitra, Maroc. Automatic identification of Fouarate Merja diatoms: An alternative to ...

  13. Influence of land-use patterns on benthic diatom communities and ...

    African Journals Online (AJOL)

    The objective of this study was to determine the effects of land-use patterns on both diatom community composition and water quality in tropical streams during the dry season. Benthic diatom collections and water quality sampling were done 4 times at 10 sites. A suite of environmental variables that varied with human ...

  14. Hierarchical and Size Dependent Mechanical Properties of Silica and Silicon Nanostructures Inspired by Diatom Algae

    Science.gov (United States)

    2010-09-01

    Syvertsen. Marine Diatoms. Academic Press, San Diego, 1996. [42] Hegel . Lectures on the history of philosophy . London: K. Paul, Trench, Trbner, & Co...invisible to the naked eye, yet unconsciously implemented in structures throughout human history , diatoms have served as a silent backbone to human

  15. The health of benthic diatom assemblages in lower stretch of a ...

    Indian Academy of Sciences (India)

    This study examines the ecological state of epilithic diatom assemblages along the lower stretch of Mandakini, a glacier-fed Himalayan river. The diatoms were sampled at four stations during winter and summer, only once in each season. Valve counts were obtained from Naphrax mounts prepared from each sample.

  16. Rotation-vibrational spectra of diatomic molecules and nuclei with Davidson interactions

    CERN Document Server

    Rowe, D J

    1998-01-01

    Complete rotation-vibrational spectra and electromagnetic transition rates are obtained for Hamiltonians of diatomic molecules and nuclei with Davidson interactions. Analytical results are derived by dynamical symmetry methods for diatomic molecules and a liquid-drop model of the nucleus. Numerical solutions are obtained for a many-particle nucleus with quadrupole Davidson interactions within the framework of the microscopic symplectic model. (author)

  17. The influence of land use on water quality and diatom community ...

    African Journals Online (AJOL)

    Epilithic diatom communities offer a holistic and integrated approach for assessing water quality as they remain in one place for a number of months and reflect an ecological memory of water quality over a period of time. The objective of this study is to use diatom assemblages to distinguish between particular land types ...

  18. The health of benthic diatom assemblages in lower stretch of a ...

    Indian Academy of Sciences (India)

    Denys L 1991 A checklist of the diatoms in the Holocene deposits of the western Belgian coastal plain with a survey of their apparent ecological requirements. I. Introduction, ecological code and complete list; Profess. Paper Belg. Geolog. Dienst 246 1–41. Descy J P and Coste M 1990 Utilisation des diatomeés ben-.

  19. Identification automatique des diatomées de la Merja fouarate : Une ...

    African Journals Online (AJOL)

    SARAH

    30 sept. 2015 ... Keyword: Diatoms, Automatic Identification, actual Image Processing, Mathematical Morphology,. Fouarate, kenitra, Maroc. INTRODUCTION. On présente, dans cette étude, une alternative aux techniques manuelles de détermination des diatomées. La problématique de l'identification et de la classification ...

  20. Paleoceanographic, and paleoclimatic constraints on the global Eocene diatom and silicoflagellate record

    Science.gov (United States)

    Barron, John A.; Stickley, Catherine E.; Bukry, David

    2015-01-01

    Eocene diatom and silicoflagellate biostratigraphy are summarized and correlated with the most recent geologic time scale as well as with the global oxygen isotope and eustatic sea level curves. The global distribution of Eocene diatom/silicoflagellate-bearing sediments varies considerably, reflecting changing oceanic gateways and paleoceanography with changing patterns that are punctuated by four major depositional events.

  1. Seasonal effects of cadmium accumulation in periphytic diatom communities of freshwater biofilms

    International Nuclear Information System (INIS)

    Thi Thuy Duong; Morin, Soizic; Herlory, Olivier; Feurtet-Mazel, Agnes; Coste, Michel; Boudou, Alain

    2008-01-01

    The relationships between diatom species and cadmium (Cd) accumulated in biofilms of the Riou-Mort River (SW, France) were studied in July 2004 and March 2005. Biofilms were sampled from artificial substrates immersed along a metallic pollution gradient during 20 days. Dynamics of diatom communities and cadmium accumulation were followed by collecting samples after 4, 7, 14 and 20 days of biofilm colonization. Cd accumulation in biofilms during experiment was significantly higher in Cd polluted station (Joanis) than in reference station (Firmi) for both seasons. Periphytic diatom composition varied between sites and seasons. At Firmi station, seasonal dynamics of diatom communities were stable with the dominance of Cyclotella meneghiniana and Melosira varians in July and Surirellabrebissonnii and Navicula gregaria in March. At Joanis station, diatom communities mainly responded to high levels of metal by a high proportion of small, adnate species. Positive correlations between Eolimna minima, Nitzschia palea, Encyonema minutum, Surirella angusta, and Gomphonema parvulum and cadmium accumulation were observed, indicating that these species are tolerant to high levels of cadmium. On the other hand, negative correlations of C. meneghiniana, N. gregaria, Navicula lanceolata, M. varians and Nitzschia dissipata with cadmium qualify them as sensitive diatom species. Periphytic diatom composition through the presence of specific species highlight metal tolerant indicator diatom groups which will be meaningful for biomonitoring pollution in natural aquatic systems

  2. Actin, actin-related proteins and profilin in diatoms: a comparative genomic analysis.

    Science.gov (United States)

    Aumeier, Charlotte; Polinski, Ellen; Menzel, Diedrik

    2015-10-01

    Diatoms are heterokont unicellular algae with a widespread distribution throughout all aquatic habitats. Research on diatoms has advanced significantly over the last decade due to available genetic transformation methods and publicly available genome databases. Yet up to now, proteins involved in the regulation of the cytoskeleton in diatoms are largely unknown. Consequently, this work focuses on actin and actin-related proteins (ARPs) encoded in the diatom genomes of Thalassiosira pseudonana, Thalassiosira oceanica, Phaeodactylum tricornutum, Fragilariopsis cylindrus and Pseudo-nitzschia multiseries. Our comparative genomic study revealed that most diatoms possess only a single conventional actin and a small set of ARPs. Among these are the highly conserved cytoplasmic Arp1 protein and the nuclear Arp4 as well as Arp6. Diatom genomes contain genes coding for two structurally different homologues of Arp4 that might serve specific functions. All diatom species examined here lack ARP2 and ARP3 proteins, suggesting that diatoms are not capable of forming the Arp2/3 complex, which is essential in most eukaryotes for actin filament branching and plus-end dynamics. Interestingly, none of the sequenced representatives of the Bacillariophyta phylum code for profilin. Profilin is an essential actin-binding protein regulating the monomer actin pool and is involved in filament plus-end dynamics. This is the first report of organisms not containing profilin. Copyright © 2015 Elsevier B.V. All rights reserved.

  3. [Change rules of quantity and species of diatoms in Hunhe River in Shenyang].

    Science.gov (United States)

    Du, Yu; Zhou, Zhe; Cai, Hong-yang; Li, Peng-fei; Xia, Jun-ling

    2013-10-01

    To observe the change rules of quantity and species of diatoms in Hunhe River in Shenyang and to provide technology and scientific evidence for drowning identification and the location of drowning in forensic investigation. In 2011, different locations for collecting water samples were chosen in Hunhe River in Shenyang. Water samples were collected and variation of quantity and species of diatoms were observed every month. And variation of dominant species of diatoms was observed every week. The quantity, species and dominant species of diatoms in Hunhe River in Shenyang varied with different time and locations. The quantity and species of diatoms were lowest from December to February and gradually increased, reaching peak in May and second peak in October, and then gradually decreased. The dominant species of diatoms varied significantly adjacent two weeks at same location from April to November, but had little changes at different locations in same week from July to August. The change rules of quantity and species of diatoms are complicated and affected by various factors such as environment and hydrology. The change rules of species and quantity of diatoms should be considered in forensic investigation of drowning identification and the location of drowning.

  4. Adaptive significance of phytoplankton stickiness with emphasis on the diatom Skeletonema costatum

    DEFF Research Database (Denmark)

    Hansen, J.L.S.; Timm, U.; Kiørboe, Thomas

    1995-01-01

    Diatom aggregate formation was analyzed using coagulation theory. Population dynamics models show that coagulation has an important impact on species succession during diatom blooms. When different species collide and form mixed aggregates this process causes interspecific interference competition...... was tested on field data, and the predicted dynamics of a spring bloom was very similar to that observed...

  5. Studies on fouling diatoms from the Zuari Estuary, Goa (west coast of India)

    Digital Repository Service at National Institute of Oceanography (India)

    Redekar, P.D.; Wagh, A.B.

    Very few studies are available in density of fouling diatoms from Zuari estuary, Goa, India. Hence this work was undertaken. In all 49 species of fouling diatoms belonging to 19 genera were recorded on glass slide as panels at 1 m depth in Zuari...

  6. Assessment of water quality based on diatom indices in a small ...

    African Journals Online (AJOL)

    Canonical correspondence analysis (CCA) demonstrated that variations in the benthic diatom community structure were best explained by ammonium, nitrate, conductivity, pH, temperature, resistivity and water flow. OMNIDIA was used for calculation of selected diatom water quality indices. A number of the indices, e.g., the ...

  7. A stress surveillance system based on calcium and nitric oxide in marine diatoms

    NARCIS (Netherlands)

    Vardi, A.; Formiggini, F.; Casotti, R.; De Martino, A.; Ribalet, F.; Miralto, A.; Bowler, C.

    2006-01-01

    Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based

  8. A stress surveillance system based on calcium and nitric oxide in marine diatoms.

    NARCIS (Netherlands)

    Vardi, A.; Formiggini, F.; Casotti, R.; De Martino, A.; Ribalet, F.; Miralto, A.; Bowler, C.

    2006-01-01

    Diatoms are an important group of eukaryotic phytoplankton, responsible for about 20% of global primary productivity. Study of the functional role of chemical signaling within phytoplankton assemblages is still in its infancy although recent reports in diatoms suggest the existence of chemical-based

  9. Challenges of diatom-based biological monitoring and assessment of streams in developing countries.

    Science.gov (United States)

    Bere, Taurai

    2016-03-01

    Stream biomonitoring tools are largely lacking for many developing countries, resulting in adoption of tools developed from other countries/regions. In many instances, however, the applicability of adopted tools to the new system has not been explicitly evaluated. The objective of this study was to test the applicability of foreign diatom-based water quality assessment indices to streams in Zimbabwe, with the view to highlight challenges being faced in diatom-based biological monitoring in this developing country. The study evaluated the relationship between measured water quality variables and diatom index scores and observed some degree of concordance between water quality variables and diatom index scores emphasising the importance of diatom indices in characterisation and monitoring of stream ecological conditions in developing countries. However, ecological requirements of some diatom species need to be clarified and incorporated in a diatom-based water quality assessment protocol unique to these regions. Resources should be channelled towards tackling challenges associated with diatom-based biological monitoring, principally taxonomic studies, training of skilled labour and acquiring and maintaining the necessary infrastructure. Meanwhile, simpler coarse taxonomy-based rapid bioassessment protocol, which is less time and resource consuming and requires less specialised manpower, can be developed for the country.

  10. Monitoring rapid valve formation in the pennate diatom Navicula salinarum (Bacillariophyceae)

    NARCIS (Netherlands)

    Hazelaar, S; van der Strate, HJ; Gieskes, WWC; Vrieling, EG

    After each division of a diatom cell, a new siliceous hypovalve is formed inside the silica deposition vesicle (SDV). We present the sequence of this early formation of the new valve in the pennate marine diatom Navicula salinarum (Grunow) Hustedt, visualized by using the fluorescent probe

  11. The recent eutrophication of Baldeggersee (Switzerland) as assessed by fossil diatom assemblages

    NARCIS (Netherlands)

    Lotter, A.F.

    1998-01-01

    Diatom analyses with an annual resolution were carried out on varves of the hypertrophic Baldeggersee (Central Swiss Plateau) for the timespan ad 1885 to 1993. They reveal seven major changes in the dominant planktonic diatoms. As a result of progressive nutrient enrichment, Baldeggersee changed

  12. Diatoms as water quality indicators in the upper reaches of the Great ...

    African Journals Online (AJOL)

    All index scores showed the Great Fish River to be impacted, and showed significant correlations of diatom species abundance with pH, NO3-N, electrical conductivity, NH4-N and CaCO3. Analysis revealed EC and NO3-N as the main environmental drivers affecting diatom commnity composition, followed by pH and ...

  13. The relevance of diatoms for water quality assessment in South Africa

    African Journals Online (AJOL)

    Water quality assessment protocols based on the use of diatoms are now well developed and their value substantiated at an international level. The use of diatoms is not designed or intended to be a “rapid” technology. The detailed level of information generated from the procedure outweighs perceived disadvantages of ...

  14. The application and testing of diatom-based indices in the Vaal and ...

    African Journals Online (AJOL)

    Diatom index scores were correlated to physical and chemical water quality variables over different time periods and at different concentrations. It was found that the tested diatom indices in general have the best correlation with average chemical data for a one-month period, starting six weeks prior to biological sampling.

  15. Production of plasma from diatomic gases by relativistic electron beams

    International Nuclear Information System (INIS)

    Cary, J.R.

    1980-01-01

    The theory of the production of plasma by the interaction of a relativistic electron beam with a diatomic gas is presented. The theory includes atomic species as well as molecular species; this is shown to be necessary when nearly fully ionized plasma are produced. In addition, the theory models magnetic field diffusion by an effective time constant, which allows extensive parameter studies to be performed. The dependence of the production process on the beam intensity and width and the gas pressure is presented. It is shown that the thin beams produced by foil-less diodes are not capable of ionizing high pressure (> or approx. = 3 Torr) targets

  16. Configuration interaction: molecular orbitals for accurate calculations on diatomics

    International Nuclear Information System (INIS)

    Ornellas, F.R.; Hagstrom, S.

    1981-06-01

    A procedure is developed to construct an optimum set of molecular orbitals (MO's) to be used in large scale configuration interaction expansion for diatomics. The set is optimum in the sense that a significant energy improvement can be obtained for a relatively short wavefunction expansion. Aplication of this methodology to the ground state of the LiH molecule gives an energy of -8.06347 a.u. for an expansion with 1852 obtained from a set with 16σ-, 12π-, and 6δ-type MO's. (Author) [pt

  17. Thermodynamics properties of diatomic molecules with general molecular potential

    Science.gov (United States)

    Ikot, Akpan N.; Chukwuocha, E. O.; Onyeaju, M. C.; Onate, C. A.; Ita, B. I.; Udoh, M. E.

    2018-02-01

    In this paper, the energy spectra of the general molecular potential are obtained using the asymptotic iteration method within the framework of non-relativistic quantum mechanics.With the energy spectrum obtained, the vibrational partition function is calculated in a closed form and is used to obtain an expression for other thermodynamic functions such as vibrational mean energy U, vibrational mean free energy F, vibrational entropy S and vibrational specific heat capacity C. These thermodynamic functions are studied for the electronic state X1Σ _g^+ of K_2 diatomic molecules.

  18. Cell damage and recovery in cryopreserved microphytobenthic diatoms

    Digital Repository Service at National Institute of Oceanography (India)

    Mitbavkar, S.; Anil, A.C.

    either directly introduced the incubated samples into liquid nitrogen [13] or con- trolled the freezing rate at ¡1°Cmin ¡1 [10] or ¡15 °C min ¡1 [9] prior to their immersion in liquid nitrogen. The two species of pennate diatoms, A. coVeae- formis and N... observations at regular intervals showed that the cells recovered in the presence of Me 2 SO wherein the contracted chloroplast showed a grad- ual increase in size, Wnally regaining the normal size and structure (Fig. 3e–g). The cells in case III con- trol did...

  19. Diatoms in peat – dominant producers in a changing environment?

    DEFF Research Database (Denmark)

    Kokfelt, Ulla; Struyf, Eric; Randsalu, Linda

    2009-01-01

    Changes in hydrology and temperature can induce rapid changes in boreal wetland ecosystems. Factors such as hydrosere, permafrost, climate and human interference may disturb the prevailing mire vegetation, whereby a new dominant assemblage can develop. At the transition from one vegetation type...... to another, the old vegetation may be suppressed, die out or start to decay, and some time may pass until a new mire vegetation is fully established. Here, we demonstrate that diatoms may thrive during such transitions, creating isolated and shallow peat layers with significantly elevated biogenic silica...

  20. Biofilm diatom community structure: Influence of temporal and substratum variability

    Digital Repository Service at National Institute of Oceanography (India)

    Patil, J.S.; Anil, A.C.

    retrieved every day for a period of 4 days and transported to the laboratory in insulated cool-boxes containing ambient seawater. After rinsing with filtered seawater to remove loosely attached cells, the biofilm was removed with a nylon brush into a... in March 1999 and phosphate (PO 4 -P) in May 1999 (Figure 2d ande).Silicate(SiO 3 )peakedinJuly1999(Figure2f). Diatoms in the ambient water column In the present study, 51 species (28centric and 23pennate) belonging to 36genera (21centric, 15pennate) were...

  1. Growth of fouling diatoms from the Zuari estuary, Goa (west coast of India) under different salinities in the laboratory

    Digital Repository Service at National Institute of Oceanography (India)

    Redekar, P.D.; Wagh, A.B.

    Diatoms take part in the initial process of fouling i.e. primary film formation. In order to understand the growth of the diatoms under different salinity conditions in the laboratory, this work was undertaken. Fouling diatoms on glass slides were...

  2. Generalized bounds for convex multistage stochastic programs

    CERN Document Server

    Künzi, H; Fandel, G; Trockel, W; Basile, A; Drexl, A; Dawid, H; Inderfurth, K; Kürsten, W; Schittko, U

    2005-01-01

    This work was completed during my tenure as a scientific assistant and d- toral student at the Institute for Operations Research at the University of St. Gallen. During that time, I was involved in several industry projects in the field of power management, on the occasion of which I was repeatedly c- fronted with complex decision problems under uncertainty. Although usually hard to solve, I quickly learned to appreciate the benefit of stochastic progr- ming models and developed a strong interest in their theoretical properties. Motivated both by practical questions and theoretical concerns, I became p- ticularly interested in the art of finding tight bounds on the optimal value of a given model. The present work attempts to make a contribution to this important branch of stochastic optimization theory. In particular, it aims at extending some classical bounding methods to broader problem classes of practical relevance. This book was accepted as a doctoral thesis by the University of St. Gallen in June 2004.1...

  3. Biochemical and Genetic Engineering of Diatoms for Polyunsaturated Fatty Acid Biosynthesis

    Directory of Open Access Journals (Sweden)

    Hong-Ye Li

    2014-01-01

    Full Text Available The role of diatoms as a source of bioactive compounds has been recently explored. Diatom cells store a high amount of fatty acids, especially certain polyunsaturated fatty acids (PUFAs. However, many aspects of diatom metabolism and the production of PUFAs remain unclear. This review describes a number of technical strategies, such as modulation of environmental factors (temperature, light, chemical composition of culture medium and culture methods, to influence the content of PUFAs in diatoms. Genetic engineering, a newly emerging field, also plays an important role in controlling the synthesis of fatty acids in marine microalgae. Several key points in the biosynthetic pathway of PUFAs in diatoms as well as recent progresses are also a critical part and are summarized here.

  4. PLASTICITY OF OXYLIPIN METABOLISM AMONG CLONES OF THE MARINE DIATOM SKELETONEMA MARINOI (BACILLARIOPHYCEAE)(1).

    Science.gov (United States)

    Gerecht, Andrea; Romano, Giovanna; Ianora, Adrianna; d'Ippolito, Giuliana; Cutignano, Adele; Fontana, Angelo

    2011-10-01

    Diatom oxylipins have been observed to deleteriously impact copepod reproductive success. However, field studies have revealed very variable and case-dependent results. Therefore, the plasticity of diatom oxylipin metabolism was studied among four clones of the marine diatom Skeletonema marinoi Sarno et Zingone. Diatom oxylipin metabolism was studied by two lipoxygenase (LOX) activity assays carried out at different pH values and by oxylipin quantification. The four clones showed no major metabolic differences in terms of protein content or growth rate. However, two of the clones produced significantly higher levels of oxylipins than the other two. LOX activity measurements also indicated clonal variability in fatty acid oxidative metabolism. The presence of clone-specific differences in oxylipin metabolism may play a role in shaping diatom population dynamics by conferring selective advantages to certain clones. © 2011 Phycological Society of America.

  5. Localized outbreak of attached diatoms on the coral Montipora due to low-temperature stress.

    Science.gov (United States)

    Yamashiro, Hideyuki; Mikame, Yurika; Suzuki, Hidekazu

    2012-01-01

    A short-term, localized outbreak of diatoms attached to live corals was observed along the coast of Sesoko Island, Okinawa, Japan in February, 2011. Diatoms are recognized as brown patches in the initial stage, becoming fluffy encrustations and resulting in complete or partial coral death. Attached diatoms, including Licmophora, Climacosphenia, Ardissonea and others, attached and overgrew exclusively Montipora corals, which are dominant corals in some parts of Sesoko reef. Heavily-covered colonies or branches died. The rate of affected corals reached 80% in the worst-affected area. Microscopic observation showed that most diatoms settled directly with polysaccharide stalks or pads onto the partly-bared skeleton of coral branches, although some settled on coral soft tissues. Although no similar phenomenon was reported from other areas of Japan, cold-water events might have important roles in coral weakening, as a consequence, enabling diatom attachment on corals, thus leading to coral death in this area.

  6. Biochemical and genetic engineering of diatoms for polyunsaturated fatty acid biosynthesis.

    Science.gov (United States)

    Li, Hong-Ye; Lu, Yang; Zheng, Jian-Wei; Yang, Wei-Dong; Liu, Jie-Sheng

    2014-01-07

    The role of diatoms as a source of bioactive compounds has been recently explored. Diatom cells store a high amount of fatty acids, especially certain polyunsaturated fatty acids (PUFAs). However, many aspects of diatom metabolism and the production of PUFAs remain unclear. This review describes a number of technical strategies, such as modulation of environmental factors (temperature, light, chemical composition of culture medium) and culture methods, to influence the content of PUFAs in diatoms. Genetic engineering, a newly emerging field, also plays an important role in controlling the synthesis of fatty acids in marine microalgae. Several key points in the biosynthetic pathway of PUFAs in diatoms as well as recent progresses are also a critical part and are summarized here.

  7. The influence of reduced light intensity on the response of benthic diatoms to herbicide exposure.

    Science.gov (United States)

    Wood, Rebecca J; Mitrovic, Simon M; Lim, Richard P; Kefford, Ben J

    2016-09-01

    Herbicide pollution events in aquatic ecosystems often coincide with increased turbidity and reduced light intensity. It is therefore important to determine whether reduced light intensity can influence herbicide toxicity, especially to primary producers such as benthic diatoms. Benthic diatoms collected from 4 rivers were exposed to herbicides in 48 h rapid toxicity tests under high light (100 µmol m(-2)  s(-1) ) and low light (20 µmol m(-2)  s(-1) ) intensities. The effects of 2 herbicides (atrazine and glyphosate) were assessed on 26 freshwater benthic diatom taxa. There was no significant interaction of light and herbicide effects at the community level or on the majority (22 of 26) of benthic diatom taxa. This indicates that low light levels will likely have only a minor influence on the response of benthic diatoms to herbicides. Environ Toxicol Chem 2016;35:2252-2260. © 2016 SETAC. © 2016 SETAC.

  8. Prediction of interference factor for homonuclear diatomic molecules: N2, O2

    Science.gov (United States)

    Ozer, Zehra Nur

    2018-02-01

    Young type interference effect for quantum particles can be seen in the cross sections for electron impact ionization of diatomic molecules. Interference factor is determined for description of interference effects in the ionization cross sections. Although such structures are observed for small diatomic molecules, larger molecules are less discussed in the recent works. Interference effects are already observed in the ionization cross sections of H2 and N2 molecules by electron impact. Similar effects expected to be seen on cross sections of larger diatomic molecules. The aim of this work, is to further highlight the possibility of interference effects may be seen also in the ionization cross sections of larger diatomic molecules and also discuss the structure of interference factor. This study is a preliminary study for the experiments can be carried to investigate interference effects in the cross sections of larger homonuclear diatomic molecules.

  9. Localized outbreak of attached diatoms on the coral Montipora due to low-temperature stress

    Science.gov (United States)

    Yamashiro, Hideyuki; Mikame, Yurika; Suzuki, Hidekazu

    2012-01-01

    A short-term, localized outbreak of diatoms attached to live corals was observed along the coast of Sesoko Island, Okinawa, Japan in February, 2011. Diatoms are recognized as brown patches in the initial stage, becoming fluffy encrustations and resulting in complete or partial coral death. Attached diatoms, including Licmophora, Climacosphenia, Ardissonea and others, attached and overgrew exclusively Montipora corals, which are dominant corals in some parts of Sesoko reef. Heavily-covered colonies or branches died. The rate of affected corals reached 80% in the worst-affected area. Microscopic observation showed that most diatoms settled directly with polysaccharide stalks or pads onto the partly-bared skeleton of coral branches, although some settled on coral soft tissues. Although no similar phenomenon was reported from other areas of Japan, cold-water events might have important roles in coral weakening, as a consequence, enabling diatom attachment on corals, thus leading to coral death in this area. PMID:22870381

  10. Adhesive modular proteins occur in the extracellular mucilage of the motile, pennate diatom Phaeodactylum tricornutum.

    Science.gov (United States)

    Dugdale, Tony M; Willis, Anusuya; Wetherbee, Richard

    2006-04-15

    This Letter reports on adhesive modular proteins recorded by atomic force microscopy on live cells from the extracellular mucilage secreted from, and deposited around, the motile form of the pennate diatom Phaeodactylum tricornutum. This is the first report of modular proteins and their supramolecular assemblies, called adhesive nanofibers (ANFs), to be found on diatoms that use adhesives not only for substratum adhesion, but as a conduit for cell motility. The permanent adhesive pads secreted by Toxarium undulatum, a sessile centric diatom, were previously shown to possess ANFs with a modular protein backbone. Our results reported here suggest that modular proteins may be an important component of diatom adhesives in general, and that diatoms utilize the tensile strength, toughness, and flexibility of ANFs for multiple functions. Significantly, the genome of P. tricornutum has recently been sequenced; this will allow directed searches of the genome to be made for genes with modular protein homologs, and subsequent detailed studies of their molecular structure and function.

  11. Surface-bound states in nanodiamonds

    Science.gov (United States)

    Han, Peng; Antonov, Denis; Wrachtrup, Jörg; Bester, Gabriel

    2017-05-01

    We show via ab initio calculations and an electrostatic model that the notoriously low, but positive, electron affinity of bulk diamond becomes negative for hydrogen passivated nanodiamonds and argue that this peculiar situation (type-II offset with a vacuum level at nearly midgap) and the three further conditions: (i) a surface dipole with positive charge on the outside layer, (ii) a spherical symmetry, and (iii) a dielectric mismatch at the surface, results in the emergence of a peculiar type of surface state localized just outside the nanodiamond. These states are referred to as "surface-bound states" and have consequently a strong environmental sensitivity. These type of states should exist in any nanostructure with negative electron affinity. We further quantify the band offsets of different type of nanostructures as well as the exciton binding energy and contrast the results with results for "conventional" silicon quantum dots.

  12. Effect of riparian vegetation on diatom assemblages in headwater streams under different land uses.

    Science.gov (United States)

    Hlúbiková, Daša; Novais, Maria Helena; Dohet, Alain; Hoffmann, Lucien; Ector, Luc

    2014-03-15

    Differences in the structure of diatom assemblages in headwaters with contrasting shading conditions and different land use in the buffer zone and upper catchment were studied in order to evaluate the influence of the lack of riparian vegetation on the biofilm. The objective was to ascertain whether a riparian buffer can mitigate the negative influence of human induced disturbance and pollution on diatom assemblages in headwaters. Four streams were selected in order to maximize the differences in the land cover and minimize other environmental gradients. Multivariate statistics, different comparative and permutation tests and correlations were applied to compare the diatom assemblages, the Specific Polluosensitivity Index (IPS) and the diatom ecological guilds (low profile, high profile and motile) among the sites studied and to evaluate their responses to disturbances. The analysis showed that low profile diatoms typically dominated in forested headwaters with limited resources, whilst assemblages at impacted sites showed a wider range of growth forms. In unimpacted streams, the diatom assemblages were influenced by temperature, pH, conductivity and calcium, as usually reported for oligotrophic streams with high natural disturbance due to fast current and shading. In both shaded and unshaded impacted streams, the importance of nutrients and land use disturbance, especially urbanization, prevailed. This trend was also reflected by the IPS index that showed consistently lower values at impacted sites, correlating most significantly with nutrients. The diatom species composition as well as diatom guilds at impacted sites were similar, regardless of the presence or absence of riparian vegetation, and were significantly influenced by seasonal changes. Our results indicate that diatoms react sensitively to alterations of the water environment in headwaters, induced by anthropogenic activities, and these impacts are not buffered by an intact riparian zone. Diatoms

  13. A caveat regarding diatom-inferred nitrogen concentrations in oligotrophic lakes

    Science.gov (United States)

    Arnett, Heather A.; Saros, Jasmine E.; Mast, M. Alisa

    2012-01-01

    Atmospheric deposition of reactive nitrogen (Nr) has enriched oligotrophic lakes with nitrogen (N) in many regions of the world and elicited dramatic changes in diatom community structure. The lakewater concentrations of nitrate that cause these community changes remain unclear, raising interest in the development of diatom-based transfer functions to infer nitrate. We developed a diatom calibration set using surface sediment samples from 46 high-elevation lakes across the Rocky Mountains of the western US, a region spanning an N deposition gradient from very low to moderate levels (phosphorus, and hypolimnetic water temperature were related to diatom distributions. A transfer function was developed for nitrate and applied to a sedimentary diatom profile from Heart Lake in the central Rockies. The model coefficient of determination (bootstrapping validation) of 0.61 suggested potential for diatom-inferred reconstructions of lakewater nitrate concentrations over time, but a comparison of observed versus diatom-inferred nitrate values revealed the poor performance of this model at low nitrate concentrations. Resource physiology experiments revealed that nitrogen requirements of two key taxa were opposite to nitrate optima defined in the transfer function. Our data set reveals two underlying ecological constraints that impede the development of nitrate transfer functions in oligotrophic lakes: (1) even in lakes with nitrate concentrations below quantification (<1 μg L−1), diatom assemblages were already dominated by species indicative of moderate N enrichment; (2) N-limited oligotrophic lakes switch to P limitation after receiving only modest inputs of reactive N, shifting the controls on diatom species changes along the length of the nitrate gradient. These constraints suggest that quantitative inferences of nitrate from diatom assemblages will likely require experimental approaches.

  14. Bacterial Associations with Diatoms Influence Host Health in a Xenic Model System

    Science.gov (United States)

    Baker, L.; Kemp, P. F.

    2016-02-01

    Diatoms are photosynthetic unicellular eukaryotes found ubiquitously in aquatic systems. Microorganisms such as bacteria are frequently found attached to diatoms and may influence the fitness of their host. The most commonly used model organisms in studies of diatom-bacterial associations are Alteromonas and Marinobacter. Some strains of Alteromonas are capable of parasitism, producing chitinases or having algicidal interactions; some strains of Marinobacter are capable of mutualism, providing its host with vital nutrients. In this study, multiple strains of Alteromonas and Marinobacter were isolated from the centric diatom Chaetoceros sp KBDT20. Isolates were added back in varying concentration to cultures of their original xenic diatom host, and to cultures of a smaller, xenic naïve host, Chaetoceros sp. KBDT32. The growth rate of the diatom host was monitored using flow cytometry to assess the impact of the added bacterial isolates on host health. Our results suggest that all strains of Alteromonas tested have an antagonistic relationship with both the original as well as the naïve host while all strains of Marinobacter tested have a synergistic relationship with both diatom cultures. The functional basis for these relationships is being explored by supplementing xenic diatom cultures with materials essential for diatom growth that may be contributed by bacteria, such as B-vitamins and bioavailable trace metals. The colonization rates and competitive interactions between bacteria are investigated through surface colonization studies. The goal of this study is to better inform our understanding of how bacterial associates of diatom populations may contribute to their health, success, or failure in aquatic systems.

  15. In vivo exposure to northern diatoms arrests sea urchin embryonic development.

    Science.gov (United States)

    Gudimova, Elena; Eilertsen, Hans C; Jørgensen, Trond Ø; Hansen, Espen

    2016-01-01

    There are numerous reports indicating that marine diatoms may act harmful to early developmental stages of invertebrates. It is believed that the compounds responsible for these detrimental effects are oxylipins resulting from oxidized polyunsaturated fatty acids, and that they may function as grazing deterrents. Most studies reporting these effects have exposed test organisms to diatom extracts or purified toxins, but data from in vivo exposure to intact diatoms are scarce. We have conducted sea urchin egg incubation and plutei feeding experiments to test if intact diatom cells affected sea urchin embryo development and survival. This was done by exposing the common northern sea urchins Strongylocentrotus droebachiensis and Echinus acutus to northern strains of the diatoms Chaetoceros socialis, Skeletonema marinoi, Chaetoceros furcellatus, Attheya longicornis, Thalassiosira gravida and Porosira glacialis. The intact diatom cell suspensions were found to inhibit sea urchin egg hatching and embryogenesis. S. marinoi was the most potent one as it caused acute mortality in S. droebachiensis eggs after only four hours exposure to high (50 μg/L Chla) diatom concentrations, as well as 24 h exposure to normal (20 μg/L Chla) and high diatom concentrations. The second most potent species was T. gravida that caused acute mortality after 24 h exposure to both diatom concentrations. A. longicornis was the least harmful of the diatom species in terms of embryo development arrestment, and it was the species that was most actively ingested by S. droebachiensis plutei. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

  16. HUBUNGAN ANTARA KANDUNGAN SILIKA DENGAN KELIMPAHAN DIATOM BENTHIK DI SEPANJANG SUNGAI PELUS KABUPATEN BANYUMAS

    Directory of Open Access Journals (Sweden)

    Siti Umiatun

    2017-03-01

    Full Text Available Silica is an element that is useful to the organism especially Diatoms (Chrysophyta: Bacillariophyceae. The sources of Silica in waters derive from weathering rock-containing silica. Diatoms are a phytoplankton that able to live as a phytobenthos distributed globally in all types of waters. The purpose of this study was to determine; the silica content, the abundance of diatoms, and the relationship between the content of silica and the abundance of diatoms in the Pelus River Banyumas. This research was conducted as a survey and samples were collected using composite sampling technique at 5 stations. Samples were collected three times with 2 weeks intervals. Two main parameters (diatoms abundance and silica content and ten supporting parameters (temperature, current velocity, pH, DO, BOD, COD, TSS, TDS, nitrate, and ortofosfat of waters were measured. Data of analysis calculated in this study including regression correlation analysis to determine the relationship of the silica content and the abundance of diatoms. The silica concentration in the Pelus River waters varies between 112.48-175.00 mg.l-1 with an average of 146 mg.l-1. The total abundance of benthic diatoms was 44,442 ind.cm-2. The highest diatoms abundance was at station II (11,128 ind.cm-2, the lowest was at Station IV (6,828 ind.cm-2. The relationship between silica contained in the waters and abundance of diatoms indicated by the value of R2 (coefficient of determination by 0.38 or 38%. The abundance of Diatoms are affected 62% by the available silica in the environment, and the rest 38% e rest are determined by other factors.

  17. Thermodynamic Bounds on Precision in Ballistic Multiterminal Transport

    Science.gov (United States)

    Brandner, Kay; Hanazato, Taro; Saito, Keiji

    2018-03-01

    For classical ballistic transport in a multiterminal geometry, we derive a universal trade-off relation between total dissipation and the precision, at which particles are extracted from individual reservoirs. Remarkably, this bound becomes significantly weaker in the presence of a magnetic field breaking time-reversal symmetry. By working out an explicit model for chiral transport enforced by a strong magnetic field, we show that our bounds are tight. Beyond the classical regime, we find that, in quantum systems far from equilibrium, the correlated exchange of particles makes it possible to exponentially reduce the thermodynamic cost of precision.

  18. Computer simulation of bounded plasmas

    International Nuclear Information System (INIS)

    Lawson, W.S.

    1987-01-01

    The problems of simulating a one-dimensional bounded plasma system using particles in a gridded space are systematically explored and solutions to them are given. Such problems include the injection of particles at the boundaries, the solution of Poisson's equation, and the inclusion of an external circuit between the confining boundaries. A recently discovered artificial cooling effect is explained as being a side-effect of quiet injection, and its potential for causing serious but subtle errors in bounded simulation is noted. The methods described in the first part of the thesis are then applied to the simulation of an extension of the Pierce diode problem, specifically a Pierce diode modified by an external circuit between the electrodes. The results of these simulations agree to high accuracy with theory when a theory exists, and also show some interesting chaotic behavior in certain parameter regimes. The chaotic behavior is described in detail

  19. Bounded Rationality in Transposition Processes

    DEFF Research Database (Denmark)

    Vollaard, Hans; Martinsen, Dorte Sindbjerg

    2014-01-01

    Studies explaining the timeliness and correctness of the transposition of EU directives into national legislation have provided rather inconclusive findings. They do not offer a clear-cut prediction concerning the transposition of the patients’ rights directive, which is one of the first that con......Studies explaining the timeliness and correctness of the transposition of EU directives into national legislation have provided rather inconclusive findings. They do not offer a clear-cut prediction concerning the transposition of the patients’ rights directive, which is one of the first...... that concerns the organisation and financing of national healthcare systems. This article applies the perspective of bounded rationality to explain (irregularities in) the timely and correct transposition of EU directives. The cognitive and organisational constraints long posited by the bounded rationality...

  20. 78 FR 18326 - Agency Information Collection Activities; Comment Request; Upward Bound and Upward Bound Math...

    Science.gov (United States)

    2013-03-26

    ...; Comment Request; Upward Bound and Upward Bound Math Science Annual Performance Report AGENCY: The Office... considered public records. Title of Collection: Upward Bound and Upward Bound Math Science Annual Performance...) and Upward Bound Math and Science (UBMS) Programs. The Department is requesting a new APR because of...

  1. Potential role of large oceanic diatoms in new primary production

    Science.gov (United States)

    Goldman, Joel C.

    1993-01-01

    Very large phytoplankton species >50 μm in size, particularly diatoms, generally are found in background numbers throughout the euphotic zone of oceanic waters. Yet, when responding to episodic injections of new nutrients across the nutricline at the base of the euphotic zone these phototrophs may make a disproportionately large contribution to new primary production. To test this concept, we isolated a group of large diatoms from the Sargasso Sea and found that the specific growth rate of several of these species in culture was great enough at the ≈2% light level in oligotrophic waters to meet the requirements of several hypothetical scenarios in which annual rates of new production from the sum of one or more episodic blooms were equal to contemporary estimates. Two of the fast-growing species, Stephanopyxis palmeriana (Greville) Grunow and Pseudoguinardia recta von Stosch, formed giant flocculant masses while growing. Such masses could sink rapidly out of the euphotic zone or be a direct food source for invertebrates or fish higher up the food chain. Not only would a short, simple trophic system with low losses result, but the events would virtually be impossible to observe with conventional sampling.

  2. Fragilariopsis diatom evolution in Pliocene and Pleistocene Antarctic shelf sediments

    Science.gov (United States)

    Sjunneskog, Charlotte; Riesselman, Christina; Winter, Diane; Scherer, Reed

    2012-01-01

    The late Pliocene – early Pleistocene sediment record in the AND-1B core from the McMurdo Sound, Ross Sea, Antarctica, displays a rich diversity and high abundance of diatoms, including several new morphologies within the genus Fragilariopsis. These new morphologies exhibit similarities to the extinct late Miocene/early Pliocene species Fragilariopsis aurica Gersonde and Fragilariopsis praecurta Gersonde, as well as to the modern sea ice-associated species Fragilariopsis ritscheri Hustedt and Fragilariopsis obliquecostata van Heurck. From the diverse morphologies present, we use light microscopy and scanning electron microscopy to identify and describe the characteristics of three new taxa, Fragilariopsis laqueata Riesselman, Fragilariopsis bohatyi Sjunneskog et Riesselman, and Fragilariopsis robusta Sjunneskog, which are common in the diatom-bearing intervals from ~3.2 to 1.95 Ma. Comparisons with extant and extinct species are made to assess possible environmental affinities, evolutionary relationships, and potential for future biostratigraphic utility. This complex of newmorphologies diversified as conditions cooled during the Pliocene, then went into decline as heavy sea ice conditions of the Pleistocene were established. Only the lineage of F. robusta appears to continue into the late Pleistocene, where it is interpreted to have evolved into F. obliquecostata.

  3. Photosystem II repair in marine diatoms with contrasting photophysiologies.

    Science.gov (United States)

    Lavaud, Johann; Six, Christophe; Campbell, Douglas A

    2016-02-01

    Skeletonema costatum and Phaeodactylum tricornutum are model marine diatoms with differing strategies for non-photochemical dissipation of excess excitation energy within photosystem II (PSII). We showed that S. costatum, with connectivity across the pigment bed serving PSII, and limited capacity for induction of sustained non-photochemical quenching (NPQ), maintained a large ratio of [PSII(Total)]/[PSII(Active)] to buffer against fluctuations in light intensity. In contrast, P. tricornutum, with a larger capacity to induce sustained NPQ, could maintain a lower [PSII(Total)]/[PSII(Active)]. Induction of NPQ was correlated with an active PSII repair cycle in both species, and inhibition of chloroplastic protein synthesis with lincomycin leads to run away over-excitation of remaining PSII(Active), particularly in S. costatum. We discuss these distinctions in relation to the differing capacities, induction and relaxation rates for NPQ, and as strain adaptations to the differential light regimes of their originating habitats. The present work further confirms the important role for the light-dependent fast regulation of photochemistry by NPQ interacting with PSII repair cycle capacity in the ecophysiology of both pennate and centric diatoms.

  4. Toxic Diatom Aldehydes Affect Defence Gene Networks in Sea Urchins.

    Science.gov (United States)

    Varrella, Stefano; Romano, Giovanna; Costantini, Susan; Ruocco, Nadia; Ianora, Adrianna; Bentley, Matt G; Costantini, Maria

    2016-01-01

    Marine organisms possess a series of cellular strategies to counteract the negative effects of toxic compounds, including the massive reorganization of gene expression networks. Here we report the modulated dose-dependent response of activated genes by diatom polyunsaturated aldehydes (PUAs) in the sea urchin Paracentrotus lividus. PUAs are secondary metabolites deriving from the oxidation of fatty acids, inducing deleterious effects on the reproduction and development of planktonic and benthic organisms that feed on these unicellular algae and with anti-cancer activity. Our previous results showed that PUAs target several genes, implicated in different functional processes in this sea urchin. Using interactomic Ingenuity Pathway Analysis we now show that the genes targeted by PUAs are correlated with four HUB genes, NF-κB, p53, δ-2-catenin and HIF1A, which have not been previously reported for P. lividus. We propose a working model describing hypothetical pathways potentially involved in toxic aldehyde stress response in sea urchins. This represents the first report on gene networks affected by PUAs, opening new perspectives in understanding the cellular mechanisms underlying the response of benthic organisms to diatom exposure.

  5. Toxic Diatom Aldehydes Affect Defence Gene Networks in Sea Urchins.

    Directory of Open Access Journals (Sweden)

    Stefano Varrella

    Full Text Available Marine organisms possess a series of cellular strategies to counteract the negative effects of toxic compounds, including the massive reorganization of gene expression networks. Here we report the modulated dose-dependent response of activated genes by diatom polyunsaturated aldehydes (PUAs in the sea urchin Paracentrotus lividus. PUAs are secondary metabolites deriving from the oxidation of fatty acids, inducing deleterious effects on the reproduction and development of planktonic and benthic organisms that feed on these unicellular algae and with anti-cancer activity. Our previous results showed that PUAs target several genes, implicated in different functional processes in this sea urchin. Using interactomic Ingenuity Pathway Analysis we now show that the genes targeted by PUAs are correlated with four HUB genes, NF-κB, p53, δ-2-catenin and HIF1A, which have not been previously reported for P. lividus. We propose a working model describing hypothetical pathways potentially involved in toxic aldehyde stress response in sea urchins. This represents the first report on gene networks affected by PUAs, opening new perspectives in understanding the cellular mechanisms underlying the response of benthic organisms to diatom exposure.

  6. Processing and characterization of diatom nanoparticles and microparticles as potential source of silicon for bone tissue engineering

    Energy Technology Data Exchange (ETDEWEB)

    Le, Thi Duy Hanh [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Bonani, Walter [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Speranza, Giorgio [Center for Materials and Microsystems, PAM-SE, Fondazione Bruno Kessler, Trento (Italy); Sglavo, Vincenzo; Ceccato, Riccardo [Department of Industrial Engineering, University of Trento, Trento (Italy); Maniglio, Devid; Motta, Antonella [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy); Migliaresi, Claudio, E-mail: claudio.migliaresi@unitn.it [Department of Industrial Engineering, University of Trento, Trento (Italy); BIOtech Research Center and European Institute of Excellence on Tissue Engineering and Regenerative Medicine, Trento (Italy); Interuniversity Consortium for Science and Technology of Materials, Trento Research Unit, Trento (Italy)

    2016-02-01

    Silicon plays an important role in bone formation and maintenance, improving osteoblast cell function and inducing mineralization. Often, bone deformation and long bone abnormalities have been associated with silica/silicon deficiency. Diatomite, a natural deposit of diatom skeleton, is a cheap and abundant source of biogenic silica. The aim of the present study is to validate the potential of diatom particles derived from diatom skeletons as silicon-donor materials for bone tissue engineering applications. Raw diatomite (RD) and calcined diatomite (CD) powders were purified by acid treatments, and diatom microparticles (MPs) and nanoparticles (NPs) were produced by fragmentation of purified diatoms under alkaline conditions. The influence of processing on the surface chemical composition of purified diatomites was evaluated by X-ray photoelectron spectroscopy (XPS). Diatoms NPs were also characterized in terms of morphology and size distribution by transmission electron microscopy (TEM) and Dynamic light scattering (DLS), while diatom MPs morphology was analyzed by scanning electron microscopy (SEM). Surface area and microporosity of the diatom particles were evaluated by nitrogen physisorption methods. Release of silicon ions from diatom-derived particles was demonstrated using inductively coupled plasma optical emission spectrometry (ICP/OES); furthermore, silicon release kinetic was found to be influenced by diatomite purification method and particle size. Diatom-derived microparticles (MPs) and nanoparticles (NPs) showed limited or no cytotoxic effect in vitro depending on the administration conditions. - Highlights: • Diatomite is a natural source of silica and has a potential as silicon-donor for bone regenerative applications. • Diatom particles derived from purified diatom skeletons were prepared by fragmentation under extreme alkaline condition. • Dissolution of diatom particles derived from diatom skeletons in DI water depend on purification method

  7. Processing and characterization of diatom nanoparticles and microparticles as potential source of silicon for bone tissue engineering

    International Nuclear Information System (INIS)

    Le, Thi Duy Hanh; Bonani, Walter; Speranza, Giorgio; Sglavo, Vincenzo; Ceccato, Riccardo; Maniglio, Devid; Motta, Antonella; Migliaresi, Claudio

    2016-01-01

    Silicon plays an important role in bone formation and maintenance, improving osteoblast cell function and inducing mineralization. Often, bone deformation and long bone abnormalities have been associated with silica/silicon deficiency. Diatomite, a natural deposit of diatom skeleton, is a cheap and abundant source of biogenic silica. The aim of the present study is to validate the potential of diatom particles derived from diatom skeletons as silicon-donor materials for bone tissue engineering applications. Raw diatomite (RD) and calcined diatomite (CD) powders were purified by acid treatments, and diatom microparticles (MPs) and nanoparticles (NPs) were produced by fragmentation of purified diatoms under alkaline conditions. The influence of processing on the surface chemical composition of purified diatomites was evaluated by X-ray photoelectron spectroscopy (XPS). Diatoms NPs were also characterized in terms of morphology and size distribution by transmission electron microscopy (TEM) and Dynamic light scattering (DLS), while diatom MPs morphology was analyzed by scanning electron microscopy (SEM). Surface area and microporosity of the diatom particles were evaluated by nitrogen physisorption methods. Release of silicon ions from diatom-derived particles was demonstrated using inductively coupled plasma optical emission spectrometry (ICP/OES); furthermore, silicon release kinetic was found to be influenced by diatomite purification method and particle size. Diatom-derived microparticles (MPs) and nanoparticles (NPs) showed limited or no cytotoxic effect in vitro depending on the administration conditions. - Highlights: • Diatomite is a natural source of silica and has a potential as silicon-donor for bone regenerative applications. • Diatom particles derived from purified diatom skeletons were prepared by fragmentation under extreme alkaline condition. • Dissolution of diatom particles derived from diatom skeletons in DI water depend on purification method

  8. A semidefinite programming based branch-and-bound framework for the quadratic assignment problem

    NARCIS (Netherlands)

    Truetsch, U.

    2014-01-01

    The practical approach to calculate an exact solution for a quadratic assignment problem (QAP) via a branch-and-bound framework depends strongly on a "smart" choice of different strategies within the framework, for example the branching strategy, heuristics for the upper bound or relaxations for the

  9. Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom.

    Science.gov (United States)

    Basu, Swaraj; Patil, Shrikant; Mapleson, Daniel; Russo, Monia Teresa; Vitale, Laura; Fevola, Cristina; Maumus, Florian; Casotti, Raffaella; Mock, Thomas; Caccamo, Mario; Montresor, Marina; Sanges, Remo; Ferrante, Maria Immacolata

    2017-07-01

    Microalgae play a major role as primary producers in aquatic ecosystems. Cell signalling regulates their interactions with the environment and other organisms, yet this process in phytoplankton is poorly defined. Using the marine planktonic diatom Pseudo-nitzschia multistriata, we investigated the cell response to cues released during sexual reproduction, an event that demands strong regulatory mechanisms and impacts on population dynamics. We sequenced the genome of P. multistriata and performed phylogenomic and transcriptomic analyses, which allowed the definition of gene gains and losses, horizontal gene transfers, conservation and evolutionary rate of sex-related genes. We also identified a small number of conserved noncoding elements. Sexual reproduction impacted on cell cycle progression and induced an asymmetric response of the opposite mating types. G protein-coupled receptors and cyclic guanosine monophosphate (cGMP) are implicated in the response to sexual cues, which overall entails a modulation of cell cycle, meiosis-related and nutrient transporter genes, suggesting a fine control of nutrient uptake even under nutrient-replete conditions. The controllable life cycle and the genome sequence of P. multistriata allow the reconstruction of changes occurring in diatoms in a key phase of their life cycle, providing hints on the evolution and putative function of their genes and empowering studies on sexual reproduction. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

  10. PREFACE: Strongly correlated electron systems Strongly correlated electron systems

    Science.gov (United States)

    Saxena, Siddharth S.; Littlewood, P. B.

    2012-07-01

    make use of 'small' electrons packed to the highest possible density. These are by definition 'strongly correlated'. For example: good photovoltaics must be efficient optical absorbers, which means that photons will generate tightly bound electron-hole pairs (excitons) that must then be ionised at a heterointerface and transported to contacts; efficient solid state refrigeration depends on substantial entropy changes in a unit cell, with large local electrical or magnetic moments; efficient lighting is in a real sense the inverse of photovoltaics; the limit of an efficient battery is a supercapacitor employing mixed valent ions; fuel cells and solar to fuel conversion require us to understand electrochemistry on the scale of a single atom; and we already know that the only prospect for effective high temperature superconductivity involves strongly correlated materials. Even novel IT technologies are now seen to have value not just for novel function but also for efficiency. While strongly correlated electron systems continue to excite researchers and the public alike due to the fundamental science issues involved, it seems increasingly likely that support for the science will be leveraged by its impact on energy and sustainability. Strongly correlated electron systems contents Strongly correlated electron systemsSiddharth S Saxena and P B Littlewood Magnetism, f-electron localization and superconductivity in 122-type heavy-fermion metalsF Steglich, J Arndt, O Stockert, S Friedemann, M Brando, C Klingner, C Krellner, C Geibel, S Wirth, S Kirchner and Q Si High energy pseudogap and its evolution with doping in Fe-based superconductors as revealed by optical spectroscopyN L Wang, W Z Hu, Z G Chen, R H Yuan, G Li, G F Chen and T Xiang Structural investigations on YbRh2Si2: from the atomic to the macroscopic length scaleS Wirth, S Ernst, R Cardoso-Gil, H Borrmann, S Seiro, C Krellner, C Geibel, S Kirchner, U Burkhardt, Y Grin and F Steglich Confinement of chiral magnetic

  11. Properties of a Bound Polaron under a Perpendicular Magnetic Field

    International Nuclear Information System (INIS)

    Liu Jia; Chen Ziyu; Xiao Jinglin; Huo Shufen

    2007-01-01

    We investigate the influence of a perpendicular magnetic field on a bound polaron near the interface of a polar-polar semiconductor with Rashba effect. The external magnetic field strongly changes the ground state binding energy of the polaron and the Rashba spin-orbit (SO) interaction originating from the inversion asymmetry in the heterostructure splits the ground state binding energy of the bound polaron. In this paper, we have shown how the ground state binding energy will be with the change of the external magnetic field, the location of a single impurity, the wave vector of the electron and the electron areal density, taking into account the SO coupling. Due to the presence of the phonons, whose energy gives negative contribution to the polaron's, the spin-splitting states of the bound polaron are more stable, and we find that in the condition of week magnetic field, the Zeeaman effect can be neglected.

  12. Soft-bound synaptic plasticity increases storage capacity.

    Directory of Open Access Journals (Sweden)

    Mark C W van Rossum

    Full Text Available Accurate models of synaptic plasticity are essential to understand the adaptive properties of the nervous system and for realistic models of learning and memory. Experiments have shown that synaptic plasticity depends not only on pre- and post-synaptic activity patterns, but also on the strength of the connection itself. Namely, weaker synapses are more easily strengthened than already strong ones. This so called soft-bound plasticity automatically constrains the synaptic strengths. It is known that this has important consequences for the dynamics of plasticity and the synaptic weight distribution, but its impact on information storage is unknown. In this modeling study we introduce an information theoretic framework to analyse memory storage in an online learning setting. We show that soft-bound plasticity increases a variety of performance criteria by about 18% over hard-bound plasticity, and likely maximizes the storage capacity of synapses.

  13. Strongly Correlated Topological Insulators

    Science.gov (United States)

    2016-02-03

    Strongly Correlated Topological Insulators In the past year, the grant was used for work in the field of topological phases, with emphasis on finding...surface of topological insulators. In the past 3 years, we have started a new direction, that of fractional topological insulators. These are materials...in which a topologically nontrivial quasi-flat band is fractionally filled and then subject to strong interactions. The views, opinions and/or

  14. An improved coupled-states approximation including the nearest neighbor Coriolis couplings for diatom-diatom inelastic collision

    Science.gov (United States)

    Yang, Dongzheng; Hu, Xixi; Zhang, Dong H.; Xie, Daiqian

    2018-02-01

    Solving the time-independent close coupling equations of a diatom-diatom inelastic collision system by using the rigorous close-coupling approach is numerically difficult because of its expensive matrix manipulation. The coupled-states approximation decouples the centrifugal matrix by neglecting the important Coriolis couplings completely. In this work, a new approximation method based on the coupled-states approximation is presented and applied to time-independent quantum dynamic calculations. This approach only considers the most important Coriolis coupling with the nearest neighbors and ignores weaker Coriolis couplings with farther K channels. As a result, it reduces the computational costs without a significant loss of accuracy. Numerical tests for para-H2+ortho-H2 and para-H2+HD inelastic collision were carried out and the results showed that the improved method dramatically reduces the errors due to the neglect of the Coriolis couplings in the coupled-states approximation. This strategy should be useful in quantum dynamics of other systems.

  15. Strong Cosmic Censorship

    Science.gov (United States)

    Isenberg, James

    2017-01-01

    The Hawking-Penrose theorems tell us that solutions of Einstein's equations are generally singular, in the sense of the incompleteness of causal geodesics (the paths of physical observers). These singularities might be marked by the blowup of curvature and therefore crushing tidal forces, or by the breakdown of physical determinism. Penrose has conjectured (in his `Strong Cosmic Censorship Conjecture`) that it is generically unbounded curvature that causes singularities, rather than causal breakdown. The verification that ``AVTD behavior'' (marked by the domination of time derivatives over space derivatives) is generically present in a family of solutions has proven to be a useful tool for studying model versions of Strong Cosmic Censorship in that family. I discuss some of the history of Strong Cosmic Censorship, and then discuss what is known about AVTD behavior and Strong Cosmic Censorship in families of solutions defined by varying degrees of isometry, and discuss recent results which we believe will extend this knowledge and provide new support for Strong Cosmic Censorship. I also comment on some of the recent work on ``Weak Null Singularities'', and how this relates to Strong Cosmic Censorship.

  16. The algebras of bounded and essentially bounded Lebesgue measurable functions

    Directory of Open Access Journals (Sweden)

    Mortini Raymond

    2017-04-01

    Full Text Available Let X be a set in ℝn with positive Lebesgue measure. It is well known that the spectrum of the algebra L∞(X of (equivalence classes of essentially bounded, complex-valued, measurable functions on X is an extremely disconnected compact Hausdorff space.We show, by elementary methods, that the spectrum M of the algebra ℒb(X, ℂ of all bounded measurable functions on X is not extremely disconnected, though totally disconnected. Let ∆ = { δx : x ∈ X} be the set of point evaluations and let g be the Gelfand topology on M. Then (∆, g is homeomorphic to (X, Τdis,where Tdis is the discrete topology. Moreover, ∆ is a dense subset of the spectrum M of ℒb(X, ℂ. Finally, the hull h(I, (which is homeomorphic to M(L∞(X, of the ideal of all functions in ℒb(X, ℂ vanishing almost everywhere on X is a nowhere dense and extremely disconnected subset of the Corona M \\ ∆ of ℒb(X, ℂ.

  17. Water quality assessment of the DTD canal system by diatom indices

    Directory of Open Access Journals (Sweden)

    Jakovljević Olga S.

    2014-01-01

    Full Text Available The main objective of this paper is to evaluate the water quality based on diatom indices in the study area of the Danube-Tisa-Danube (DTD canal system. We used four diatom indices: Watanabe’s index (DAIpo, biological diatom index (BDI or IBD, the trophic diatom index (TDI and index of pollution sensitivity (IPS. Benthic samples were collected in the spring and autumn 2002 and 2003 from nine sampling sites. The standard method with concentrated sulfuric acid was used for treatment of the algological samples [Krammer and Lange-Bertalot 1986] and then permanent slides of diatoms were made. The abundance was estimated by counting 400 valves of each taxa present on slide [Round 1991, 1993]. Investigation of the DTD canal system resulted in description of 145 diatom taxa. Based on the indicator values of identified taxa we calculated four diatom indices (DAIpo, BDI, TDI and IPS and estimated water quality in the study area of the DTD canal system. [[Projekat Ministarstva nauke Republike Srbije, br. TR 037009

  18. Diatoms dominate the eukaryotic metatranscriptome during spring in coastal 'dead zone' sediments.

    Science.gov (United States)

    Broman, Elias; Sachpazidou, Varvara; Dopson, Mark; Hylander, Samuel

    2017-10-11

    An important characteristic of marine sediments is the oxygen concentration that affects many central metabolic processes. There has been a widespread increase in hypoxia in coastal systems (referred to as 'dead zones') mainly caused by eutrophication. Hence, it is central to understand the metabolism and ecology of eukaryotic life in sediments during changing oxygen conditions. Therefore, we sampled coastal 'dead zone' Baltic Sea sediment during autumn and spring, and analysed the eukaryotic metatranscriptome from field samples and after incubation in the dark under oxic or anoxic conditions. Bacillariophyta (diatoms) dominated the eukaryotic metatranscriptome in spring and were also abundant during autumn. A large fraction of the diatom RNA reads was associated with the photosystems suggesting a constitutive expression in darkness. Microscope observation showed intact diatom cells and these would, if hatched, represent a significant part of the pelagic phytoplankton biomass. Oxygenation did not significantly change the relative proportion of diatoms nor resulted in any major shifts in metabolic 'signatures'. By contrast, diatoms rapidly responded when exposed to light suggesting that light is limiting diatom development in hypoxic sediments. Hence, it is suggested that diatoms in hypoxic sediments are on 'standby' to exploit the environment if they reach suitable habitats. © 2017 The Author(s).

  19. [Distribution of Diatoms in Main Sections of Urban District Rivers with Drowning-prone in Chengdu].

    Science.gov (United States)

    Ni, Z X; Xie, Q; Yi, X F

    2016-10-01

    To explore the species distribution and constituent ratio of diatoms in main sections of urban district rivers where drowning occurs frequently in Chengdu. Total 39 water samples from the sampling points of 5 rivers (Jinjiang, Jinniu, Qingyang, Wuhou and Chenghua districts) in October 2014 were collected. The diatoms smear were made and the species distribution and constituent ratio of diatoms from the water samples were analyzed using biological microscope and acquisition system of digital microscope. Total 21 species of diatoms were detected in main sections of urban district rivers in Chengdu. Significant differences in the dominant diatom species and proportions of the different rivers were observed, and there were different species existed in all sampling points of the upstream, midstream and downstream of the rivers. The database of species map, species distribution and constituent ratio of diatoms in main sections of urban district rivers in Chengdu are preliminarily established, which has special meaning for the analysis and evaluation of falling location inference using diatoms test in case investigation. Copyright© by the Editorial Department of Journal of Forensic Medicine

  20. Limnological record inferred from diatoms in sediments of Lake Skaliska (north-eastern Poland

    Directory of Open Access Journals (Sweden)

    Sienkiewicz Elwira

    2013-06-01

    Full Text Available Subfossil diatoms analysis was employed to reconstruct past environmental changes in Lake Skaliska. This lake, presently a palaeolake, is located on a wide plain called the Skaliska Basin (northern part of Mazury Lake District, north-eastern Poland. Changes in terrestrial vegetation suggest that the initial phase of the lake was in the early Holocene. In the sediments a total of 176 diatom species belonging to 35 genera were identified. The majority of diatoms are alkaliphilous and alkalibiontic, occurring mainly in meso-eutrophic water. Diatom flora development suggests that the best conditions for diatom growth prevailed throughout the Boreal and in the early Atlantic, a suggestion supported by the increased frequency of planktonic diatoms living in nutrient-rich water. A water pH reconstruction (DIpH based on diatoms points to alkalinity during the lake’s existence. Since roughly the mid-Atlantic the lake was shallowing, and at the beginning of the Subboreal peat sedimentation led to complete overgrowth of the lake.

  1. Investigation of the hydrodynamic behavior of diatom aggregates using particle image velocimetry.

    Science.gov (United States)

    Xiao, Feng; Li, Xiaoyan; Lam, Kitming; Wang, Dongsheng

    2012-01-01

    The hydrodynamic behavior of diatom aggregates has a significant influence on the interactions and flocculation kinetics of algae. However, characterization of the hydrodynamics of diatoms and diatom aggregates in water is rather difficult. In this laboratory study, an advanced visualization technique in particle image velocimetry (PIV) was employed to investigate the hydrodynamic properties of settling diatom aggregates. The experiments were conducted in a settling column filled with a suspension of fluorescent polymeric beads as seed tracers. A laser light sheet was generated by the PIV setup to illuminate a thin vertical planar region in the settling column, while the motions of particles were recorded by a high speed charge-coupled device (CCD) camera. This technique was able to capture the trajectories of the tracers when a diatom aggregate settled through the tracer suspension. The PIV results indicated directly the curvilinear feature of the streamlines around diatom aggregates. The rectilinear collision model largely overestimated the collision areas of the settling particles. Algae aggregates appeared to be highly porous and fractal, which allowed streamlines to penetrate into the aggregate interior. The diatom aggregates have a fluid collection efficiency of 10%-40%. The permeable feature of aggregates can significantly enhance the collisions and flocculation between the aggregates and other small particles including algal cells in water.

  2. Diatom-based inference of Asian monsoon precipitation from a volcanic lake in southwest China for the last 18.5 ka

    Science.gov (United States)

    Li, Yanling; Chen, Xu; Xiao, Xiayun; Zhang, Hucai; Xue, Bin; Shen, Ji; Zhang, Enlou

    2018-02-01

    Diatom in the volcanic lake provides proxy evidence for pH changes that are characterized by variations in the percentage of acidophilous diatom species. The information regarding the hydrology of the lake, derived from a previous publication and survey of one year on the lake, indicate that pH is low during the wet season and higher during the dry season. Therefore, variations in lake water pH may be considered as a proxy record for past changes in precipitation. In the sediment, high/low relative abundance of acidophilous diatom species indicates high/low precipitation. The diatom record of the past 18.5 ka BP shows that precipitation decrease during the periods 17.0-15.0, 13.3-11.3, and 0.7-0.3 ka BP corresponding to the Heinrich Event 1 (H1), the Younger Dryas cold event (YD), and the Little Ice Age (LA). A marked precipitation increase between 15.0 and 14.5 ka BP occurred at the end of H1 and before the Bølling-Allerød (BA), which indicates a strong pre-Bølling wetting. The start of the Holocene is recorded at 11.3 ka BP. The climate was the wettest between 11.3 and 7.5 ka BP., then the wetter between 7.5 and 3.4 ka BP. Between 3.4 and 0.7 ka BP, the precipitation decrease in general, but in the period from 1.3 to 0.8 ka BP the precipitation was higher corresponding to the Medieval Warm Period (MWP). Our results support the hypothes that the Indian Summer Monsoon (ISM) was strongest during the Early Holocene.

  3. Transcriptional responses of three model diatoms to nitrate limitation of growth

    Directory of Open Access Journals (Sweden)

    Sara J Bender

    2014-03-01

    Full Text Available Diatoms are among the most diverse groups of phytoplankton in the ocean. Despite their widely recognized influence on ocean ecosystems and global biogeochemistry, little is known about the impact of this diversity on large-scale processes. Here, we examined the ramifications of between-species diversity by documenting the transcriptional response of three diatoms - Thalassiosira pseudonana, Fragilariopsis cylindrus, and Pseudo-nitzschia multiseries - to the onset of nitrate limitation of growth, a common limiting nutrient in the ocean. The three species shared 5,583 clusters of orthologous genes based on OrthoMCL clustering of publically available diatom genomes. These clusters represent 30-54% of the predicted genes in each diatom genome. Less than 5% of genes within these core clusters displayed the same transcriptional responses across species when growth was limited by nitrate availability. Orthologs, such as those involved in nitrogen uptake and assimilation, as well as carbon metabolism, were differently expressed across the three species. The two pennate diatoms, F. cylindrus and P. multiseries, shared 3,839 clusters without orthologs in the genome of the centric diatom T. pseudonana. A majority of these pennate-clustered genes, as well as the non-orthologous genes in each species, had minimal annotation information, but were often significantly differentially expressed under nitrate limitation, indicating their potential importance in the response to nitrogen availability. Despite these variations in the specific transcriptional response of each diatom, overall transcriptional patterns suggested that all three diatoms displayed a common physiological response to nitrate limitation that consisted of a general reduction in carbon fixation and carbohydrate and fatty acid metabolism and an increase in nitrogen recycling. Characterization of these finely tuned responses will help to better predict which types of diatoms will bloom under which

  4. A Hard Day's Night: Diatoms continue recycling Photosystem II in the dark

    Directory of Open Access Journals (Sweden)

    Gang Li

    2016-11-01

    Full Text Available Marine diatoms are photosynthetic, and thrive in environments where light fluctuates. Like all oxygenic photosynthetic organisms diatoms face a light-dependent inactivation of the Photosystem II complexes that photooxidize water to generate biosynthetic reductant. To maintain photosynthesis this photoinactivation must be countered by slow and metabolically expensive protein turnover, which is light dependent in cyanobacteria and in plants. We tracked daily cycles of the content, synthesis and degradation of Photosystem II, in a small and in a large marine diatom, under low and high growth light levels. We show that, unlike plants, diatoms maintain extensive cycling of Photosystem II proteins even in the dark. Photosystem II protein cycling saturates at low light, and continued cycling in dark periods, using energy from respiration, allows the diatoms to catch up to excess photoinactivation accumulated over the preceding illuminated period. The large diatom suffers only limited photoinactivation of Photosystem II, but cycling of Photosystem II protein exceeds Photosystem II inactivation, so the large diatom recycles functional Photosystem II units before they are inactivated. Through the diel cycle the contents of active Photosystem II centers and Photosystem II proteins change predictably, but are not correlated, generating large changes in the fraction of total PSII that is active at a given time or growth condition. We propose that dark and steady cycling of Photosystem II proteins is driven by the tight integration of chloroplastic and mitochondrial metabolism in diatoms. This ability for baseline, continuous Photosystem II repair could contribute to the success of diatoms in mixed water environments that carry them from illumination to darkness and back.

  5. Diatoms as an indicator for tile drainage flow in a German lowland catchment.

    Science.gov (United States)

    Wu, Naicheng; Faber, Claas; Ulrich, Uta; Fohrer, Nicola

    2018-01-01

    The separation of runoff components within a model simulation is of great importance for a successful implementation of management measures. Diatoms could be a promising indicator for tile drainage flow due to their diverse preferences to different aquatic habitats. In this study, we collected diatom samples of 9 sites (4 tile drainage, TD, and 5 river sites, Ri) in a German lowland catchment at a weekly or biweekly time step from March to July 2013 with the aim of testing the suitability of diatoms for tile drainage flow, which is typical for lowland catchment. Planothidium lanceolatum , Ulnaria biceps , and Navicula gregaria dominated in TD sites with relative abundances of 22.2, 21.5, and 10.9%, respectively. For Ri sites, the most abundant species was Navicula lanceolata (20.5%), followed by Ulnaria biceps (12.9%), Cyclotella meneghiniana (9.5%), and Planothidium lanceolatum (9.3%). Compared with Ri sites, TD had a lower diatom density, biomass, species richness, and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at TD. Indicator value method (IndVal) revealed that the two groups (Ri and TD) were characterized by different indicator species. Fifteen taxa, including Cocconeis placentula , Cyclotella meneghiniana , N. lanceolata , and U. biceps , were significant indicators for Ri sites. Planothidium lanceolatum , Achnanthidium minutissimum , and Navicula gregaria were significant indicators for TD sites. A pronounced variation was found in the species lists of diatom community between Ri and TD water body types associated with different indicator species. With respect to hydrograph separation, these findings highlight the suitability of diatoms as an indicator for tile drainage flow. However, spatial and temporal variations of diatoms should be considered in future surveys.

  6. Diatom Transcriptional and Physiological Responses to Changes in Iron Bioavailability across Ocean Provinces

    Directory of Open Access Journals (Sweden)

    Natalie R. Cohen

    2017-11-01

    Full Text Available Changes in iron (Fe bioavailability influence diatom physiology and community composition, and thus have a profound impact on primary productivity and ecosystem dynamics. Iron limitation of diatom growth rates has been demonstrated in both oceanic and coastal waters of the Northeast Pacific Ocean and is predicted to become more pervasive in future oceans. However, it is unclear how the strategies utilized by phytoplankton to cope with low Fe bioavailability and resupply differ across these ocean provinces. We investigated the response of diatom communities to variable Fe conditions through incubation experiments performed in the Fe mosaic of the California Upwelling Zone and along a natural Fe gradient in the Northeast Pacific Ocean. Through coupling gene expression of two dominant diatom taxa (Pseudo-nitzschia and Thalassiosira with biological rate process measurements, we provide an in-depth examination of the physiological and molecular responses associated with varying Fe status. Following Fe enrichment, oceanic diatoms showed distinct differential expression of gene products involved in nitrogen assimilation, photosynthetic carbon fixation, and vitamin production compared to diatoms from low-Fe coastal sites, possibly driven by the chronic nature of Fe stress at the oceanic site. Genes of interest involved in Fe and N metabolism additionally exhibited divergent expression patterns between the two diatom taxa investigated, demonstrating that diverse diatoms may invoke alternative strategies when dealing with identical changes in their environment. We report here several mechanisms used distinctly by coastal or oceanic diatom communities as well as numerous taxa-specific strategies for coping with Fe stress and rearranging nutrient metabolism following Fe enrichment.

  7. Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions.

    Directory of Open Access Journals (Sweden)

    Mariusz A Bromke

    Full Text Available Diatoms are very efficient in their use of available nutrients. Changes in nutrient availability influence the metabolism and the composition of the cell constituents. Since diatoms are valuable candidates to search for oil producing algae, measurements of diatom-produced compounds can be very useful for biotechnology. In order to explore the diversity of lipophilic compounds produced by diatoms, we describe the results from an analysis of 13 diatom strains. With the help of a lipidomics platform, which combines an UPLC separation with a high resolution/high mass accuracy mass spectrometer, we were able to measure and annotate 142 lipid species. Out of these, 32 were present in all 13 cultures. The annotated lipid features belong to six classes of glycerolipids. The data obtained from the measurements were used to create lipidomic profiles. The metabolomic overview of analysed cultures is amended by the measurement of 96 polar compounds. To further increase the lipid diversity and gain insight into metabolomic adaptation to nitrogen limitation, diatoms were cultured in media with high and low concentrations of nitrate. The growth in nitrogen-deplete or nitrogen-replete conditions affects metabolite accumulation but has no major influence on the species-specific metabolomic profile. Thus, the genetic component is stronger in determining metabolic patterns than nitrogen levels. Therefore, lipid profiling is powerful enough to be used as a molecular fingerprint for diatom cultures. Furthermore, an increase of triacylglycerol (TAG accumulation was observed in low nitrogen samples, although this trend was not consistent across all 13 diatom strains. Overall, our results expand the current understanding of metabolomics diversity in diatoms and confirm their potential value for producing lipids for either bioenergy or as feed stock.

  8. Metabolomic Profiling of 13 Diatom Cultures and Their Adaptation to Nitrate-Limited Growth Conditions

    Science.gov (United States)

    Bromke, Mariusz A.; Sabir, Jamal S.; Alfassi, Fahad A.; Hajarah, Nahid H.; Kabli, Saleh A.; Al-Malki, Abdulrahman L.; Ashworth, Matt P.; Méret, Michaël; Jansen, Robert K.; Willmitzer, Lothar

    2015-01-01

    Diatoms are very efficient in their use of available nutrients. Changes in nutrient availability influence the metabolism and the composition of the cell constituents. Since diatoms are valuable candidates to search for oil producing algae, measurements of diatom-produced compounds can be very useful for biotechnology. In order to explore the diversity of lipophilic compounds produced by diatoms, we describe the results from an analysis of 13 diatom strains. With the help of a lipidomics platform, which combines an UPLC separation with a high resolution/high mass accuracy mass spectrometer, we were able to measure and annotate 142 lipid species. Out of these, 32 were present in all 13 cultures. The annotated lipid features belong to six classes of glycerolipids. The data obtained from the measurements were used to create lipidomic profiles. The metabolomic overview of analysed cultures is amended by the measurement of 96 polar compounds. To further increase the lipid diversity and gain insight into metabolomic adaptation to nitrogen limitation, diatoms were cultured in media with high and low concentrations of nitrate. The growth in nitrogen-deplete or nitrogen-replete conditions affects metabolite accumulation but has no major influence on the species-specific metabolomic profile. Thus, the genetic component is stronger in determining metabolic patterns than nitrogen levels. Therefore, lipid profiling is powerful enough to be used as a molecular fingerprint for diatom cultures. Furthermore, an increase of triacylglycerol (TAG) accumulation was observed in low nitrogen samples, although this trend was not consistent across all 13 diatom strains. Overall, our results expand the current understanding of metabolomics diversity in diatoms and confirm their potential value for producing lipids for either bioenergy or as feed stock. PMID:26440112

  9. Voronoi Diagrams Without Bounding Boxes

    Science.gov (United States)

    Sang, E. T. K.

    2015-10-01

    We present a technique for presenting geographic data in Voronoi diagrams without having to specify a bounding box. The method restricts Voronoi cells to points within a user-defined distance of the data points. The mathematical foundation of the approach is presented as well. The cell clipping method is particularly useful for presenting geographic data that is spread in an irregular way over a map, as for example the Dutch dialect data displayed in Figure 2. The automatic generation of reasonable cell boundaries also makes redundant a frequently used solution to this problem that requires data owners to specify region boundaries, as in Goebl (2010) and Nerbonne et al (2011).

  10. Sensitivity analysis using probability bounding

    International Nuclear Information System (INIS)

    Ferson, Scott; Troy Tucker, W.

    2006-01-01

    Probability bounds analysis (PBA) provides analysts a convenient means to characterize the neighborhood of possible results that would be obtained from plausible alternative inputs in probabilistic calculations. We show the relationship between PBA and the methods of interval analysis and probabilistic uncertainty analysis from which it is jointly derived, and indicate how the method can be used to assess the quality of probabilistic models such as those developed in Monte Carlo simulations for risk analyses. We also illustrate how a sensitivity analysis can be conducted within a PBA by pinching inputs to precise distributions or real values

  11. Distribution and occurrence of diatom community along three estuaries of Dakshina Kannada, west coast of India.

    Science.gov (United States)

    Shashikumar, K C; Madhyastha, M N; Rekha, P D

    2002-10-01

    The present paper deals with the collection and identification of Diatoms (Bacillariophyceae) of three estuaries at Dakshina Kannada district, (Karnataka). The studies were carried out for a period of one year extending between November 1994 to December 1995. A total of 33 taxa belonging to 24 genera were recorded from three different estuaries. The highest number of diatom taxa were recorded from H1 & G1 estuaries and the most common diatom genera observed at all the stations were Coscinodiscus sp., and Cheatoceros sp.,. The various ecological parameters analysed are discussed.

  12. Determining Normal-Distribution Tolerance Bounds Graphically

    Science.gov (United States)

    Mezzacappa, M. A.

    1983-01-01

    Graphical method requires calculations and table lookup. Distribution established from only three points: mean upper and lower confidence bounds and lower confidence bound of standard deviation. Method requires only few calculations with simple equations. Graphical procedure establishes best-fit line for measured data and bounds for selected confidence level and any distribution percentile.

  13. Strong Arcwise Connectedness

    OpenAIRE

    Espinoza, Benjamin; Gartside, Paul; Kovan-Bakan, Merve; Mamatelashvili, Ana

    2012-01-01

    A space is `n-strong arc connected' (n-sac) if for any n points in the space there is an arc in the space visiting them in order. A space is omega-strong arc connected (omega-sac) if it is n-sac for all n. We study these properties in finite graphs, regular continua, and rational continua. There are no 4-sac graphs, but there are 3-sac graphs and graphs which are 2-sac but not 3-sac. For every n there is an n-sac regular continuum, but no regular continuum is omega-sac. There is an omega-sac ...

  14. Abortion: Strong's counterexamples fail

    DEFF Research Database (Denmark)

    Di Nucci, Ezio

    2009-01-01

    This paper shows that the counterexamples proposed by Strong in 2008 in the Journal of Medical Ethics to Marquis's argument against abortion fail. Strong's basic idea is that there are cases--for example, terminally ill patients--where killing an adult human being is prima facie seriously morally......'s scenarios have some valuable future or admitted that killing them is not seriously morally wrong. Finally, if "valuable future" is interpreted as referring to objective standards, one ends up with implausible and unpalatable moral claims....

  15. Observational Bounds on Cosmic Doomsday

    Energy Technology Data Exchange (ETDEWEB)

    Shmakova, Marina

    2003-07-11

    Recently it was found, in a broad class of models, that the dark energy density may change its sign during the evolution of the universe. This may lead to a global collapse of the universe within the time t{sub c} {approx} 10{sup 10}-10{sup 11} years. Our goal is to find what bounds on the future lifetime of the universe can be placed by the next generation of cosmological observations. As an example, we investigate the simplest model of dark energy with a linear potential V({phi}) = V{sub 0}(1 + {alpha}{phi}). This model can describe the present stage of acceleration of the universe if {alpha} is small enough. However, eventually the field {phi} rolls down, V({phi}) becomes negative, and the universe collapses. The existing observational data indicate that the universe described by this model will collapse not earlier than t{sub c} {approx_equal} 10 billion years from the present moment. We show that the data from SNAP and Planck satellites may extend the bound on the ''doomsday'' time to tc 40 billion years at the 95% confidence level.

  16. Quantum bounds on Bell inequalities

    Science.gov (United States)

    Pál, Károly F.; Vértesi, Tamás

    2009-02-01

    We have determined the maximum quantum violation of 241 tight bipartite Bell inequalities with up to five two-outcome measurement settings per party by constructing the appropriate measurement operators in up to six-dimensional complex and eight-dimensional real-component Hilbert spaces using numerical optimization. Out of these inequalities 129 have been introduced here. In 43 cases higher-dimensional component spaces gave larger violation than qubits, and in three occasions the maximum was achieved with six-dimensional spaces. We have also calculated upper bounds on these Bell inequalities using a method proposed recently. For all but 20 inequalities the best solution found matched the upper bound. Surprisingly, the simplest inequality of the set examined, with only three measurement settings per party, was not among them, despite the high dimensionality of the Hilbert space considered. We also computed detection threshold efficiencies for the maximally entangled qubit pair. These could be lowered in several instances if degenerate measurements were also allowed.

  17. Thermodynamically stable diatomic dications: The cases of SrO2+ and SrH2+

    Science.gov (United States)

    Gonçalves dos Santos, Levi; Franzreb, Klaus; Ornellas, Fernando R.

    2018-03-01

    A high level theoretical investigation of the low-lying electronic states of the diatomic dications SrO2+ and SrH2+ is presented for the first time along with experimental results of their mass spectra where they were detected. A global and reliable picture of the potential energy curves of the electronic states and the associated spectroscopic parameters provide quantitative results attesting to the thermodynamic stability of both species. Inclusion of spin-orbit interactions does not significantly change the energetic characterization. For SrO2+, the ground (X 3Σ-) and first excited (A 3Π, Te = 3971 cm-1) states are bound (De) by 15.94 kcal mol-1 and 4.71 kcal mol-1, respectively. Transition probabilities (Av'v″) have been evaluated and radiative lifetimes estimated for the vibrational states of A 3Π (v'), and transition probabilities are expected to be diagonally dominant and fall in the far-IR region of the spectrum. For the singlet states a 1Δ, b 1Π, c 1Σ+, and d 1Σ+, transition probabilities have also been calculated for all symmetry allowed transitions and the radiative lifetimes evaluated for selected vibrational states of the upper levels. The transitions associated with the band systems d 1Σ+-b 1Π and d 1Σ+-c 1Σ+, although falling in the yellow region of the spectrum, with overlapping bands, are expected to show quite distinct intensities since the transition moment associated with d 1Σ+-c 1Σ+ is much larger. For singlet transitions, the prediction of relative intensities using the Franck-Condon approximation fails in most of the cases. For SrH2+, only the ground state is bound (De = 6.54 kcal mol-1); with an equilibrium distance of 5.117 a0, the associated spectroscopic parameters (ωe, ωexe, Be) turned out to be (518.9, 32.77, 2.3227) in cm-1. For both species, dipole moment functions illustrate the variation of the molecular polarity with the internuclear distance.

  18. Asymmetric wave transmission in a diatomic acoustic/elastic metamaterial

    Energy Technology Data Exchange (ETDEWEB)

    Li, Bing; Tan, K. T., E-mail: ktan@uakron.edu [Department of Mechanical Engineering, The University of Akron, Akron, Ohio 44325-3903 (United States)

    2016-08-21

    Asymmetric acoustic/elastic wave transmission has recently been realized using nonlinearity, wave diffraction, or bias effects, but always at the cost of frequency distortion, direction shift, large volumes, or external energy. Based on the self-coupling of dual resonators, we propose a linear diatomic metamaterial, consisting of several small-sized unit cells, to realize large asymmetric wave transmission in low frequency domain (below 1 kHz). The asymmetric transmission mechanism is theoretically investigated, and numerically verified by both mass-spring and continuum models. This passive system does not require any frequency conversion or external energy, and the asymmetric transmission band can be theoretically predicted and mathematically controlled, which extends the design concept of unidirectional transmission devices.

  19. Stable Langmuir solitons in plasma with diatomic ions

    Directory of Open Access Journals (Sweden)

    M. Dvornikov

    2013-08-01

    Full Text Available We study stable axially and spherically symmetric spatial solitons in plasma with diatomic ions. The stability of a soliton against collapse is provided by the interaction of induced electric dipole moments of ions with the rapidly oscillating electric field of a plasmoid. We derive the new cubic-quintic nonlinear Schrödinger equation, which governs the soliton dynamics and numerically solve it. Then we discuss the possibility of implementation of such plasmoids in realistic atmospheric plasma. In particular, we suggest that spherically symmetric Langmuir solitons, described in the present work, can be excited at the formation stage of long-lived atmospheric plasma structures. The implication of our model for the interpretation of the results of experiments for the plasmoids generation is discussed.

  20. Copepod recruitment and food composition : Do diatoms affect hatching success?

    DEFF Research Database (Denmark)

    Jonasdottir, Sigrun; Kiørboe, Thomas

    1996-01-01

    Laboratory experiments were conducted to differentiate between factors controlling the hatching success of copepod eggs. Factors that could affect viability of eggs; viz food quality, female condition and external factors were investigated. In a series of experiments the copepod Acartia tonsa Dana...... was fed several different diets while egg production and hatching success were monitored. The diet was analysed for fatty acid content as an indicator of food quality. Both egg production and hatching were found to be affected by the nutritional quality of the food. Hatching was also highly dependent...... on female fertility. External effects were tested by exposing eggs to diatom extracts. Negative effects were only evident at high extract concentrations, but disappeared when aeration was supplied to the solution. Oxygen measurements showed that failure to hatch was due to hypoxia in the extracts...

  1. Atom-diatom scattering dynamics of spinning molecules

    Energy Technology Data Exchange (ETDEWEB)

    Eyles, C. J. [Institut für Chemie und Biochemie, Freie Universität Berlin, 14195 Berlin (Germany); Floß, J.; Averbukh, I. Sh. [Department of Chemical Physics, Weizmann Institute of Science, Rehovot 76100 (Israel); Leibscher, M. [Institut für Theoretische Physik, Leibniz Universität Hannover, 30167 Hannover (Germany)

    2015-01-14

    We present full quantum mechanical scattering calculations using spinning molecules as target states for nuclear spin selective atom-diatom scattering of reactive D+H{sub 2} and F+H{sub 2} collisions. Molecules can be forced to rotate uni-directionally by chiral trains of short, non-resonant laser pulses, with different nuclear spin isomers rotating in opposite directions. The calculations we present are based on rotational wavepackets that can be created in this manner. As our simulations show, target molecules with opposite sense of rotation are predominantly scattered in opposite directions, opening routes for spatially and quantum state selective scattering of close chemical species. Moreover, two-dimensional state resolved differential cross sections reveal detailed information about the scattering mechanisms, which can be explained to a large degree by a classical vector model for scattering with spinning molecules.

  2. Shedding light on diatom photonics by means of digital holography.

    Science.gov (United States)

    Di Caprio, Giuseppe; Coppola, Giuseppe; De Stefano, Luca; De Stefano, Mario; Antonucci, Alessandra; Congestri, Roberta; De Tommasi, Edoardo

    2014-05-01

    Diatoms are among the dominant phytoplankters in the world's oceans, and their external silica investments, resembling artificial photonic crystals, are expected to play an active role in light manipulation. Digital holography allowed studying the interaction with light of Coscinodiscus wailesii cell wall reconstructing the light confinement inside the cell cytoplasm, condition that is hardly accessible via standard microscopy. The full characterization of the propagated beam, in terms of quantitative phase and intensity, removed a long-standing ambiguity about the origin of the light confinement. The data were discussed in the light of living cell behavior in response to their environment. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  3. Laboratory Rotational Spectroscopy of Astrophysical Interesting Diatomic Hydrides

    Science.gov (United States)

    Halfen, DeWayne; Ziurys, L.

    2008-05-01

    Diatomic hydride are among the most common molecular species in the interstellar medium (ISM). The low molecular mass and thus moments of inertia cause their rotational spectra to lie entirely in the submillimeter and far-infrared regions. Hence, the future airborne and space-borne platforms, such as SOFIA and Herschel, are primed to explore these prevalent molecules. However, in order to detect these species in the ISM, their rotational spectra must first be measured in the laboratory. Using submillimeter direct absorption methods in the Ziurys laboratory, we have recorded the spectra of several diatomic hydrides of astrophysical interest. We have measured the pure rotational spectrum of MnH (X7Σ+: N = 0 - 1) and MnD (N = 2 - 3), as well as the deuterium and carbon-13 isotopologues of CH, CD (X2Πr: N = 1 - 1 and 1 - 2) and 13CH (N = 1 - 1). Manganese hydride and deuteride were created in a DC discharge of H2 or D2 and manganese vapor, generated in a Broida-type oven. CD and 13CH were produced in an AC discharge of argon and CD4 or 13CH4. For MnH, the five strongest manganese hyperfine transitions were recorded in its N = 0 - 1 transition, each of which are additionally split by hydrogen hyperfine interactions. CD and 13CH also have multiple hyperfine components due to the D, 13C, and/or H atoms. The direct measurement of these fundamental transitions will allow for unambiguous astronomical detections. The results of these studies will be presented.

  4. Fatty Acid Synthesis by Indonesian Marine Diatom, Chaetoceros gracilis

    Directory of Open Access Journals (Sweden)

    ALBERTA RIKA PRATIWI

    2009-12-01

    Full Text Available Since the primary storage nutrients in diatoms consist of lipid, they are potential for the industrial fatty acid production. High value fatty acids include arachidonic acid, eicosapentaenoic acid and docosahexaenoic acid. This study aimed to analyze fatty acid synthesis by Chaetoceros gracilis diatom during growth. There was a large increase in lipid yield from 4pg cell−1 mass of lipid per cell at the exponential phase to 283pg cell−1 at stationary phase. The lipid concentrations also increased significantly from the stationary phase to the death phase, but not significantly from the end exponential phase to the stationary phase. The relative percentage of saturated fatty acid (SAFA of the total fatty acid was higher than that of monounsaturated fatty acid (MUFA and polyunsaturated fatty acid (PUFA at all of growth phase. The highest PUFA was found at stationary phase at the same time when SAFA was being the lowest. The majority of SAFA was palmitic acid (24.03–40.35%. MUFA contained significant proportion of oleic acid (19.6–20.9%. Oleic acid, linoleic acid and á-linolenic acid were found at every stage growth. These fatty acids are considered as precursor for production of long chain PUFA-Docosahexaenoic acid (DHA/22:6ù3 through series of desaturation and elongation step with all of desaturase enzyme (Ä8-D, Ä9-D, Ä12-D, Ä15-D, Ä17-D, Ä6-D, Ä5-D, and Ä4-D and elongase enzyme (E.

  5. The thylakoid membrane proteome of two marine diatoms outlines both diatom-specific and species-specific features of the photosynthetic machinery.

    Science.gov (United States)

    Grouneva, Irina; Rokka, Anne; Aro, Eva-Mari

    2011-12-02

    The thylakoid membrane of photoautotrophic organisms contains the main components of the photosynthetic electron transport chain. Detailed proteome maps of the thylakoid protein complexes of two marine diatoms, Thalassiosira pseudonana and Phaeodactylum tricornutum, were created by means of two-dimensional blue native (BN)/SDS-PAGE coupled with mass spectrometry analysis. One novel diatom-specific photosystem I (PS I)-associated protein was identified. A second plastid-targeted protein with possible PS I interaction was discovered to be restricted to the centric diatom species T. pseudonana. PGR5/PGRL homologues were found to be the only protein components of PS I-mediated cyclic electron transport common to both species. For the first time, evidence for a possible PS I localization of LI818-like light harvesting proteins (Lhcx) is presented. This study also advances the current knowledge on the light harvesting antenna composition and Lhcx expression in T. pseudonana on the protein level and presents details on the molecular distribution of Lhcx in diatoms. Above mentioned proteins and several others with unknown function provide a broad basis for further mutagenesis analysis, aiming toward further understanding of the composition and function of the photosynthetic apparatus of diatoms. The proteomics approach of this study further served as a tool to confirm and improve genome-derived protein models.

  6. Physics of Strongly Coupled Plasma

    Energy Technology Data Exchange (ETDEWEB)

    Kraeft, Wolf-Dietrich [Universitat Rostock (Germany)

    2007-07-15

    Strongly coupled plasmas (or non-ideal plasmas) are multi-component charged many-particle systems, in which the mean value of the potential energy of the system is of the same order as or even higher than the mean value of the kinetic energy. The constituents are electrons, ions, atoms and molecules. Dusty (or complex) plasmas contain still mesoscopic (multiply charged) particles. In such systems, the effects of strong coupling (non-ideality) lead to considerable deviations of physical properties from the corresponding properties of ideal plasmas, i.e., of plasmas in which the mean kinetic energy is essentially larger than the mean potential energy. For instance, bound state energies become density dependent and vanish at higher densities (Mott effect) due to the interaction of the pair with the surrounding particles. Non-ideal plasmas are of interest both for general scientific reasons (including, for example, astrophysical questions), and for technical applications such as inertially confined fusion. In spite of great efforts both experimentally and theoretically, satisfactory information on the physical properties of strongly coupled plasmas is not at hand for any temperature and density. For example, the theoretical description of non-ideal plasmas is possible only at low densities/high temperatures and at extremely high densities (high degeneracy). For intermediate degeneracy, however, numerical experiments have to fill the gap. Experiments are difficult in the region of 'warm dense matter'. The monograph tries to present the state of the art concerning both theoretical and experimental attempts. It mainly includes results of the work performed in famous Russian laboratories in recent decades. After outlining basic concepts (chapter 1), the generation of plasmas is considered (chapter 2, chapter 3). Questions of partial (chapter 4) and full ionization (chapter 5) are discussed including Mott transition and Wigner crystallization. Electrical and

  7. A strong comeback

    International Nuclear Information System (INIS)

    Marier, D.

    1992-01-01

    This article presents the results of a financial rankings survey which show a strong economic activity in the independent energy industry. The topics of the article include advisor turnover, overseas banks, and the increase in public offerings. The article identifies the top project finance investors for new projects and restructurings and rankings for lenders

  8. Holography, Dimensional Reduction and the Bekenstein Bound

    Science.gov (United States)

    Bak, Dongsu; Yee, Ho-Ung

    2004-04-01

    We consider dimensional reduction of the lightlike holography of the covariant entropy bound from D+1 dimensional geometry of M × S1 to the D dimensional geometry M. With a warping factor, the local Bekenstein bound in D+1 dimensions leads to a more refined form of the bound from the D dimensional view point. With this new local Bekenstein bound, it is quite possible to saturate the lightlike holography even with nonvanishing expansion rate. With a Kaluza-Klein gauge field, the dimensional reduction implies a stronger bound where the energy momentum tensor contribution is replaced by the energy momentum tensor with the electromagnetic contribution subtracted.

  9. Isolation and partial chemical analysis of exopolysaccharides from cultivated marine diatom Coscinodiscus wailesii (Coscinodiscales, Bacillariophyta); Isolamento e analise quimica parcial de exopolissacarideos da diatomacea marinha cultivada Coscinodiscus wailesii (Coscinodiscales, Bacillariophyta)

    Energy Technology Data Exchange (ETDEWEB)

    Marson-Ascencio, Poliana G.; Ascencio, Sergio Donizeti [Universidade Federal do Tocantins, Palmas, TO (Brazil); Baggio, Selma Faria Zawadzki, E-mail: polianamarson@uft.edu.br [Universidade Federal do Parana, Curitiba, PR (Brazil). Centro Politecnico. Dept. de Bioquimica e Biologia Molecular

    2012-07-01

    The marine diatom Coscinodiscus wailesii has attracted ecological interest because their blooms affect fishing areas. The aim of this work was the isolation, extraction and partial chemical characterization of soluble exopolysaccharide and bound exopolysaccharide from C. wailesii. Cultures were grown in Guillards f/2 medium under controlled conditions of temperature, aeration, photo period and light intensity. Percentage of carbohydrate, uronic acids, sulfates groups and cellular lipids was determined. Ion exchange chromatography of exopolysaccharides produced three fractions whose partial chemical structures were disclosed using {sup 13}C NMR and methylation techniques. (author)

  10. Rapid induction of GFP expression by the nitrate reductase promoter in the diatom Phaeodactylum tricornutum

    Science.gov (United States)

    Ewe, Daniela; Río Bártulos, Carolina; Kroth, Peter G.; Gruber, Ansgar

    2016-01-01

    An essential prerequisite for a controlled transgene expression is the choice of a suitable promoter. In the model diatom Phaeodactylum tricornutum, the most commonly used promoters for trans-gene expression are the light dependent lhcf1 promoters (derived from two endogenous genes encoding fucoxanthin chlorophyll a/c binding proteins) and the nitrate dependent nr promoter (derived from the endogenous nitrate reductase gene). In this study, we investigated the time dependent expression of the green fluorescent protein (GFP) reporter under control of the nitrate reductase promoter in independently genetically transformed P. tricornutum cell lines following induction of expression by change of the nitrogen source in the medium via flow cytometry, microscopy and western blotting. In all investigated cell lines, GFP fluorescence started to increase 1 h after change of the medium, the fastest increase rates were observed between 2 and 3 h. Fluorescence continued to increase slightly for up to 7 h even after transfer of the cells to ammonium medium. The subsequent decrease of GFP fluorescence was much slower than the increase, probably due to the stability of GFP. The investigation of several cell lines transformed with nr based constructs revealed that, also in the absence of nitrate, the promoter may show residual activity. Furthermore, we observed a strong variation of gene expression between independent cell lines, emphasising the importance of a thorough characterisation of genetically modified cell lines and their individual expression patterns. PMID:27635322

  11. Production, Characterization, and Antioxidant Activity of Fucoxanthin from the Marine Diatom Odontella aurita

    Science.gov (United States)

    Xia, Song; Wang, Ke; Wan, Linglin; Li, Aifen; Hu, Qiang; Zhang, Chengwu

    2013-01-01

    The production, characterization, and antioxidant capacity of the carotenoid fucoxanthin from the marine diatom Odontella aurita were investigated. The results showed that low light and nitrogen-replete culture medium enhanced the biosynthesis of fucoxanthin. The maximum biomass concentration of 6.36 g L−1 and maximum fucoxanthin concentration of 18.47 mg g−1 were obtained in cultures grown in a bubble column photobioreactor (Ø 3.0 cm inner diameter), resulting in a fucoxanthin volumetric productivity of 7.96 mg L−1 day−1. A slight reduction in biomass production was observed in the scaling up of O. aurita culture in a flat plate photobioreactor, yet yielded a comparable fucoxanthin volumetric productivity. A rapid method was developed for extraction and purification of fucoxanthin. The purified fucoxanthin was identified as all-trans-fucoxanthin, which exhibited strong antioxidant properties, with the effective concentration for 50% scavenging (EC50) of 1,1-dihpenyl-2-picrylhydrazyl (DPPH) radical and 2,2′-Azino-bis(3-ethylbenzthiazoline-6-sulfonic acid (ABTS) radical being 0.14 and 0.03 mg mL−1, respectively. Our results suggested that O. aurita can be a natural source of fucoxanthin for human health and nutrition. PMID:23880936

  12. Coherent control of atoms and diatomic molecules with shaped ultrashort pulses

    International Nuclear Information System (INIS)

    Degert, J.

    2002-12-01

    This thesis deals with the theoretical and experimental study of coherent control of atomic and molecular systems with shaped pulses. At first, we present several experiments of control of coherent transients in rubidium. These transients appear when a two-level system is excited by a perturbative chirped pulse, and are characterized by oscillations in the excited state population. For a strong chirp, we show that a phase step in the spectrum modifies the phase of the oscillations. Then, by direct analogy with Fresnel zone lens, we conceive a chirped pulse with a highly modulated amplitude, allowing to suppress destructive contributions to the population transfer. In a second set of experiments, we focus on quantum path interferences in two-photon transitions excited by linearly chirped pulses. Owing to the broad bandwidth of ultrashort pulses, sequential and direct excitation paths contribute to the excited state population. Oscillations resulting from interferences between these two paths are observed in atomic sodium. Moreover, we show that they are observable whatever the sign of chirp. Theoretically, we study the control of the predissociation of a benchmark diatomic molecule: NaI. Predissociation leads to matter wave interferences in the fragments distribution. First, we show that a suitably chosen probe pulse allows the observation of theses interferences. Next, using a sequence of control pulse inducing electronic transition, we demonstrate the possibility to manipulate fragment energy distribution. (author)

  13. Production, Characterization, and Antioxidant Activity of Fucoxanthin from the Marine Diatom Odontella aurita

    Directory of Open Access Journals (Sweden)

    Chengwu Zhang

    2013-07-01

    Full Text Available The production, characterization, and antioxidant capacity of the carotenoid fucoxanthin from the marine diatom Odontella aurita were investigated. The results showed that low light and nitrogen-replete culture medium enhanced the biosynthesis of fucoxanthin. The maximum biomass concentration of 6.36 g L−1 and maximum fucoxanthin concentration of 18.47 mg g−1 were obtained in cultures grown in a bubble column photobioreactor (Ø 3.0 cm inner diameter, resulting in a fucoxanthin volumetric productivity of 7.96 mg L−1 day−1. A slight reduction in biomass production was observed in the scaling up of O. aurita culture in a flat plate photobioreactor, yet yielded a comparable fucoxanthin volumetric productivity. A rapid method was developed for extraction and purification of fucoxanthin. The purified fucoxanthin was identified as all-trans-fucoxanthin, which exhibited strong antioxidant properties, with the effective concentration for 50% scavenging (EC50 of 1,1-dihpenyl-2-picrylhydrazyl (DPPH radical and 2,2′-Azino-bis(3-ethylbenzthiazoline-6-sulfonic acid (ABTS radical being 0.14 and 0.03 mg mL−1, respectively. Our results suggested that O. aurita can be a natural source of fucoxanthin for human health and nutrition.

  14. The diversity of diatom assemblages developed on fallow soil in Pogórska Wola near Tarnów (southern Poland

    Directory of Open Access Journals (Sweden)

    Jadwiga Stanek-Tarkowska

    2015-03-01

    Full Text Available The aim of this work was to investigate the species diversity of diatoms growing on fallow fields on loose sand. The study site was located in the western part of Pogórska Wola near Tarnów (southern Poland. Samples were collected from fallow land once a month from April to December 2011. 57 diatom taxa from 19 different genera were found. The most numerous genera were Fragilaria (8 and Luticola (7. The highest species richness was observed in December, November and July, while the highest values of species diversity (Shannon–Wiener index were recorded between August and October. Four taxa – Pinnularia borealis Ehrenb. var. borealis, Stauroneis borrichii (Petersen Lund, Hantzschia amphioxys (Ehrenb. Grunow, and Luticola nivalis (Ehrenb. D.G. Mann, were found to be the dominant species. Neutral species (a pH of about 7 dominated in all months (from April to December, reaching an over 90% share in the assemblage. In terms of nitrogen content, nitrogen-autotrophic taxa, tolerating an elevated concentration of organically bound nitrogen, occurred most abundantly, as was indicated by the low content of nitrogen in the soil.

  15. Source-specific diatom lipid biomarkers as proxies for Arctic and Antarctic sea ice

    Science.gov (United States)

    Belt, Simon

    2016-04-01

    Sea ice plays a key role in controlling global climate due its influence over heat and gas exchange between the oceans and the atmosphere. In addition, sea ice exerts a strong influence over the absorption of incoming radiation at the ocean surface as a result of its high reflectivity or albedo. Driven, in part, by the recent dramatic changes to sea ice cover in both the Arctic and the Antarctic, the development of proxies for sea ice has received growing attention over the last 10 years or so. Amongst these, some so-called highly branched isoprenoid (HBI) lipid biomarkers have attracted considerable interest, not least, because they are derived from certain diatoms that reside and bloom within the sea ice matrix itself, thus providing a more direct indication of sea ice presence compared with some other proxies. The signature HBI sea proxies are a mono-unsaturated HBI (IP25) for the Arctic and a di-unsaturated HBI (C25:2) for the Antarctic, with different source organisms for each. Although the variability in sedimentary abundances of IP25 and C25:2 in Arctic and Antarctic sediments generally reflect the corresponding changes in sea ice conditions, a more complete picture of reconstructing sea ice conditions likely requires a multi-proxy approach involving, for example, other lipid biomarkers that serve as proxy measures of nearby open water conditions or sea surface temperature. By adoption of such an approach, a research strategy aimed at improving estimates of sea ice concentrations or better definitions of sea ice conditions (e.g. marginal ice zone, polynyas, permanent ice cover) represents the next stage in lipid-based sea ice proxy development. This presentation will focus on recent developments and future plans that involve a multi-proxy approach to improving sea ice reconstruction. An understanding of sources, ecology and environmental fate of various HBIs and other diatom lipids will likely be key in shaping the future direction of lipid-based sea ice

  16. Capacity Bounds for Parallel Optical Wireless Channels

    KAUST Repository

    Chaaban, Anas

    2016-01-01

    A system consisting of parallel optical wireless channels with a total average intensity constraint is studied. Capacity upper and lower bounds for this system are derived. Under perfect channel-state information at the transmitter (CSIT), the bounds have to be optimized with respect to the power allocation over the parallel channels. The optimization of the lower bound is non-convex, however, the KKT conditions can be used to find a list of possible solutions one of which is optimal. The optimal solution can then be found by an exhaustive search algorithm, which is computationally expensive. To overcome this, we propose low-complexity power allocation algorithms which are nearly optimal. The optimized capacity lower bound nearly coincides with the capacity at high SNR. Without CSIT, our capacity bounds lead to upper and lower bounds on the outage probability. The outage probability bounds meet at high SNR. The system with average and peak intensity constraints is also discussed.

  17. Marine diatoms in polar and sub-polar environments and their application to Late Pleistocene paleoclimate reconstruction

    Energy Technology Data Exchange (ETDEWEB)

    Crosta, Xavier, E-mail: x.crosta@epoc.u-bordeaux1.fr [UMR-CNRS 5805 EPOC, Universite Bordeaux 1, Avenue des Facultes, 33405 Talence Cedex (France)

    2011-05-15

    Diatoms are one of the major phytoplankton groups in polar and sub-polar marine environments along with green algae and chrysophytes. Diatoms are composed of two components, a two-valve test made of amorphous silica and an organic cell encapsulated into the test. Mucilage covering the test and proteins embedded in the silica lattice of the test completes the organic pool of the diatoms. The preservation of these two components into deep-sea sediments allows for a large set of diatom-based proxies to infer past oceanographic and climatic changes in polar and sub-polar marine environments. Most diatom species in polar and sub-polar marine environments exhibit a narrow range of ecological preferences, especially in terms of sea-surface temperature and sea ice conditions. Preserved diatom assemblages in deep-sea sediments mirror the diatom assemblages in the phytoplankton. It is subsequently possible to extrapolate the relationships between diatom assemblages in surface sediments and modern parameters to down-core fossil assemblages to document past changes in sea-surface temperatures and sea ice conditions. Congruent analysis of biogenic silica and organic carbon and stable isotope ratios (O, Si in the silica matrix and C, N in the diatom-intrinsic organic matter) provides information on siliceous productivity, nutrient cycling and water mass circulation. Measurements of diatom biomarkers give complementary information on sea ice conditions and siliceous productivity.

  18. Marine diatoms in polar and sub-polar environments and their application to Late Pleistocene paleoclimate reconstruction

    International Nuclear Information System (INIS)

    Crosta, Xavier

    2011-01-01

    Diatoms are one of the major phytoplankton groups in polar and sub-polar marine environments along with green algae and chrysophytes. Diatoms are composed of two components, a two-valve test made of amorphous silica and an organic cell encapsulated into the test. Mucilage covering the test and proteins embedded in the silica lattice of the test completes the organic pool of the diatoms. The preservation of these two components into deep-sea sediments allows for a large set of diatom-based proxies to infer past oceanographic and climatic changes in polar and sub-polar marine environments. Most diatom species in polar and sub-polar marine environments exhibit a narrow range of ecological preferences, especially in terms of sea-surface temperature and sea ice conditions. Preserved diatom assemblages in deep-sea sediments mirror the diatom assemblages in the phytoplankton. It is subsequently possible to extrapolate the relationships between diatom assemblages in surface sediments and modern parameters to down-core fossil assemblages to document past changes in sea-surface temperatures and sea ice conditions. Congruent analysis of biogenic silica and organic carbon and stable isotope ratios (O, Si in the silica matrix and C, N in the diatom-intrinsic organic matter) provides information on siliceous productivity, nutrient cycling and water mass circulation. Measurements of diatom biomarkers give complementary information on sea ice conditions and siliceous productivity.

  19. Regulation of the Calvin-Benson-Bassham cycle in the enigmatic diatoms: biochemical and evolutionary variations on an original theme.

    Science.gov (United States)

    Jensen, Erik; Clément, Romain; Maberly, Stephen C; Gontero, Brigitte

    2017-09-05

    In Plantae, the Calvin-Benson-Bassham (CBB) cycle is highly regulated and most of its enzymes have been thoroughly studied. Since diatoms arose as a result of secondary endosymbiosis with one or more Plantae ancestors, their precise evolutionary history is enigmatic and complex resulting in biochemical variations on the original CBB cycle theme. The Rubisco Michaelis constant for CO 2 is higher in diatoms than land plants and the nuclear-encoded Rubisco activase in Plantae is replaced by an analogous chloroplast-encoded CbbX (Calvin-Benson-Bassham protein X) in diatoms. In the CBB cycle reduction phase, phosphoglycerate kinase in diatoms is redox-regulated and similar to that in red algae; however, glyceraldehyde phosphate dehydrogenase (GAPDH) is not redox-regulated, unlike in Plantae. The phosphoribulokinase (PRK)-GAPDH-CP12 complex found in many photosynthetic organisms has not yet been found in diatoms, but a ferredoxin-NADP reductase (FNR)-GAPDH-CP12 complex has been found in one species. In the CBB cycle regeneration phase, sedoheptulose 1,7-bisphosphatase and PRK are not redox-regulated in diatoms, unlike in Plantae. Regulation at the transcriptional level seems to be important in diatoms. CBB cycle enzyme properties appear to be variable among diatoms, but this view relies on results from a few model species: a greater range of diatoms need to be studied to test this.This article is part of the themed issue 'The peculiar carbon metabolism in diatoms'. © 2017 The Author(s).

  20. Tidal Channel Diatom Assemblages Reflect within Wetland Environmental Conditions and Land Use at Multiple Scales

    Science.gov (United States)

    We characterized regional patterns of the tidal channel benthic diatom community and examined the relative importance of local wetland and surrounding landscape level factors measured at multiple scales in structuring this assemblage. Surrounding land cover was characterized at ...