Soft x-ray streak cameras

International Nuclear Information System (INIS)

Stradling, G.L.

1988-01-01

This paper is a discussion of the development and of the current state of the art in picosecond soft x-ray streak camera technology. Accomplishments from a number of institutions are discussed. X-ray streak cameras vary from standard visible streak camera designs in the use of an x-ray transmitting window and an x-ray sensitive photocathode. The spectral sensitivity range of these instruments includes portions of the near UV and extends from the subkilovolt x- ray region to several tens of kilovolts. Attendant challenges encountered in the design and use of x-ray streak cameras include the accommodation of high-voltage and vacuum requirements, as well as manipulation of a photocathode structure which is often fragile. The x-ray transmitting window is generally too fragile to withstand atmospheric pressure, necessitating active vacuum pumping and a vacuum line of sight to the x-ray signal source. Because of the difficulty of manipulating x-ray beams with conventional optics, as is done with visible light, the size of the photocathode sensing area, access to the front of the tube, the ability to insert the streak tube into a vacuum chamber and the capability to trigger the sweep with very short internal delay times are issues uniquely relevant to x-ray streak camera use. The physics of electron imaging may place more stringent limitations on the temporal and spatial resolution obtainable with x-ray photocathodes than with the visible counterpart. Other issues which are common to the entire streak camera community also concern the x-ray streak camera users and manufacturers

Identification of host factors potentially involved in RTM-mediated resistance during potyvirus long distance movement.

Science.gov (United States)

Sofer, Luc; Cabanillas, Daniel Garcia; Gayral, Mathieu; Téplier, Rachèle; Pouzoulet, Jérôme; Ducousso, Marie; Dufin, Laurène; Bréhélin, Claire; Ziegler-Graff, Véronique; Brault, Véronique; Revers, Frédéric

2017-07-01

The long distance movement of potyviruses is a poorly understood step of the viral cycle. Only factors inhibiting this process, referred to as "Restricted TEV Movement" (RTM), have been identified in Arabidopsis thaliana. On the virus side, the potyvirus coat protein (CP) displays determinants required for long-distance movement and for RTM-based resistance breaking. However, the potyvirus CP was previously shown not to interact with the RTM proteins. We undertook the identification of Arabidopsis factors which directly interact with either the RTM proteins or the CP of lettuce mosaic virus (LMV). An Arabidopsis cDNA library generated from companion cells was screened with LMV CP and RTM proteins using the yeast two-hybrid system. Fourteen interacting proteins were identified. Two of them were shown to interact with CP and the RTM proteins suggesting that a multiprotein complex could be formed between the RTM proteins and virions or viral ribonucleoprotein complexes. Co-localization experiments in Nicotiana benthamiana showed that most of the viral and cellular protein pairs co-localized at the periphery of chloroplasts which suggests a putative role for plastids in this process.

Triton's streaks as windblown dust

Science.gov (United States)

Sagan, Carl; Chyba, Christopher

1990-01-01

Explanations for the surface streaks observed by Voyager 2 on Triton's southern hemisphere are discussed. It is shown that, despite Triton's tenuous atmosphere, low-cohesion dust trains with diameters of about 5 micron or less may be carried into suspension by aeolian surface shear stress, given expected geostrophic wind speeds of about 10 m/s. For geyser-like erupting dust plumes, it is shown that dust-settling time scales and expected wind velocities can produce streaks with length scales in good agreement with those of the streaks. Thus, both geyserlike eruptions or direct lifting by surface winds appear to be viable mechanisms for the origin of the streaks.

Molecular Characterization of Five Potyviruses Infecting Korean Sweet Potatoes Based on Analyses of Complete Genome Sequences

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Hae-Ryun Kwak

2015-12-01

Full Text Available Sweet potatoes (Ipomea batatas L. are grown extensively, in tropical and temperate regions, and are important food crops worldwide. In Korea, potyviruses, including Sweet potato feathery mottle virus (SPFMV, Sweet potato virus C (SPVC, Sweet potato virus G (SPVG, Sweet potato virus 2 (SPV2, and Sweet potato latent virus (SPLV, have been detected in sweet potato fields at a high (~95% incidence. In the present work, complete genome sequences of 18 isolates, representing the five potyviruses mentioned above, were compared with previously reported genome sequences. The complete genomes consisted of 10,081 to 10,830 nucleotides, excluding the poly-A tails. Their genomic organizations were typical of the Potyvirus genus, including one target open reading frame coding for a putative polyprotein. Based on phylogenetic analyses and sequence comparisons, the Korean SPFMV isolates belonged to the strains RC and O with >98% nucleotide sequence identity. Korean SPVC isolates had 99% identity to the Japanese isolate SPVC-Bungo and 70% identity to the SPFMV isolates. The Korean SPVG isolates showed 99% identity to the three previously reported SPVG isolates. Korean SPV2 isolates had 97% identity to the SPV2 GWB-2 isolate from the USA. Korean SPLV isolates had a relatively low (88% nucleotide sequence identity with the Taiwanese SPLV-TW isolates, and they were phylogenetically distantly related to SPFMV isolates. Recombination analysis revealed that possible recombination events occurred in the P1, HC-Pro and NIa-NIb regions of SPFMV and SPLV isolates and these regions were identified as hotspots for recombination in the sweet potato potyviruses.

Wind Streaks on Earth; Exploration and Interpretation

Science.gov (United States)

Cohen-Zada, Aviv Lee; Blumberg, Dan G.; Maman, Shimrit

2015-04-01

Wind streaks, one of the most common aeolian features on planetary surfaces, are observable on the surface of the planets Earth, Mars and Venus. Due to their reflectance properties, wind streaks are distinguishable from their surroundings, and they have thus been widely studied by remote sensing since the early 1970s, particularly on Mars. In imagery, these streaks are interpreted as the presence - or lack thereof - of small loose particles on the surface deposited or eroded by wind. The existence of wind streaks serves as evidence for past or present active aeolian processes. Therefore, wind streaks are thought to represent integrative climate processes. As opposed to the comprehensive and global studies of wind streaks on Mars and Venus, wind streaks on Earth are understudied and poorly investigated, both geomorphologically and by remote sensing. The aim of this study is, thus, to fill the knowledge gap about the wind streaks on Earth by: generating a global map of Earth wind streaks from modern high-resolution remotely sensed imagery; incorporating the streaks in a geographic information system (GIS); and overlaying the GIS layers with boundary layer wind data from general circulation models (GCMs) and data from the ECMWF Reanalysis Interim project. The study defines wind streaks (and thereby distinguishes them from other aeolian features) based not only on their appearance in imagery but more importantly on their surface appearance. This effort is complemented by a focused field investigation to study wind streaks on the ground and from a variety of remotely sensed images (both optical and radar). In this way, we provide a better definition of the physical and geomorphic characteristics of wind streaks and acquire a deeper knowledge of terrestrial wind streaks as a means to better understand global and planetary climate and climate change. In a preliminary study, we detected and mapped over 2,900 wind streaks in the desert regions of Earth distributed in

Detección molecular de potyvirus en hojas y minibulbillos de ajo, Allium sativum, asociados a un programa de producción de semilla limpia

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M. Parra Fuentes

2014-07-01

Full Text Available Título en español: Detección molecular de potyvirus en hojas y minibulbillos de ajo, Allium sativum, asociados a un programa de producción de semilla limpia Título en ingles: Molecular detection of potyvirus in leaves and small bulbs of garlic, Allium sativum, associated a clean seed production program Titulo corto: Detección de potyvirus en plantas de ajo Resumen: El ajo (Allium sativum L se reproduce vegetativamente utilizando bulbillos, condición que favorece la propagación de enfermedades, especialmente bacterias, hongos y virus que afectan la calidad y el rendimiento del cultivo. Por este motivo se implementó la identificación molecular por RT-PCR de los potyvirus LYSV y OYDV en el sistema de producción de semilla limpia de ajo en tres clones nacionales. En la fase de producción de semilla limpia mediante micropropagación, se estandarizó el establecimiento de meristemos de ajo. La presencia de potyvirus se analizó en 586 plántulas mediante ELISA y en 70 por RT-PCR. Para la RT-PCR se extrajo ARN a partir de microbulbillos y hojas de plántulas, obteniéndose 1.7 a 226 ng/ml de ARN y se sintetizó entre 35 a 50 ng de cADN. Los resultados obtenidos mostraron que el protocolo de desinfección produjo una viabilidad del 73.6%. El análisis ELISA presentó un saneamiento del 96.1% de las plántulas a potyvirus, mientras que con RT-PCR se identificó la presencia de LYSV en el 8.6% de las muestras evaluadas. El virus del enanismo amarrillo de la cebolla (OYDV no fue detectado en ninguna de las muestras. Los resultados muestran que el cultivo in vitro de meristemos de ajo es una excelente alternativa para la producción de semilla, mostrando un 92% de eficiencia. Además, validan el diagnóstico eficiente del potyvirus LYSV en hojas y microbulbillos de ajo. Palabras clave: Allium sativum, ELISA, micropropagación, LSYV, potyvirus, OYDV, RT-PCR. Abstract:  Garlic (Allium sativum L, reproduces vegetatively using bulbils, condition

Evaluation of weeds as possible hosts of the potyviruses associated with tree tomato (Solanum betaceum Cav. viroses

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Sierra S. Adela

2012-04-01

Full Text Available

To determine possible weed hosts of potyviruses associated with the disease known as “tree tomato virus disease” in Antioquia department (Colombia, a sampling was conducted to identify weed species commonly found in commercial crops of S. betaceum affected by the virus and the possible presence of the virus in these plants. The encountered weed species were grouped into seven different taxonomic families, within which we evaluated the ten most common species. The selected weeds, three indicator species of the virus and tree tomato plants were grown in a greenhouse and mechanically inoculated with an extract of infected tree tomato tissue. One month after inoculation, the tree tomato plants and Nicotiana tabacum showed symptoms of the disease and were serologically positive, whereas none of the weeds showed symptoms or were positive for potyviruses serology. In order to confirm that the detection of the virus was not caused by low viral titers that did not reach the minimum detection level of the test used, the tomato tree plants were reinoculated with an extract of sap from the studied weeds and potyviruses was not detected in any of the tested weeds and therefore cannot be considered, with the utilized methodology, as hosts for the potyviruses affecting tree tomato plants.

Cuestionario de Sucesos Vitales (CSV): Estructura factorial, propiedades psicométricas y datos normativos

OpenAIRE

Sandín, Bonifacio; Chorot, Paloma

2017-01-01

El objetivo del estudio fue validar el Cuestionario de Sucesos Vitales (CSV). Se utilizaron dos muestras amplias e independientes (rango de edad: 19-67 años). Se aplicó un protocolo en dos momentos temporales (separados por 6 meses) que incluía el CS

Nonlinear streak computation using boundary region equations

Energy Technology Data Exchange (ETDEWEB)

Martin, J A; Martel, C, E-mail: juanangel.martin@upm.es, E-mail: carlos.martel@upm.es [Depto. de Fundamentos Matematicos, E.T.S.I Aeronauticos, Universidad Politecnica de Madrid, Plaza Cardenal Cisneros 3, 28040 Madrid (Spain)

2012-08-01

The boundary region equations (BREs) are applied for the simulation of the nonlinear evolution of a spanwise periodic array of streaks in a flat plate boundary layer. The well-known BRE formulation is obtained from the complete Navier-Stokes equations in the high Reynolds number limit, and provides the correct asymptotic description of three-dimensional boundary layer streaks. In this paper, a fast and robust streamwise marching scheme is introduced to perform their numerical integration. Typical streak computations present in the literature correspond to linear streaks or to small-amplitude nonlinear streaks computed using direct numerical simulation (DNS) or the nonlinear parabolized stability equations (PSEs). We use the BREs to numerically compute high-amplitude streaks, a method which requires much lower computational effort than DNS and does not have the consistency and convergence problems of the PSE. It is found that the flow configuration changes substantially as the amplitude of the streaks grows and the nonlinear effects come into play. The transversal motion (in the wall normal-streamwise plane) becomes more important and strongly distorts the streamwise velocity profiles, which end up being quite different from those of the linear case. We analyze in detail the resulting flow patterns for the nonlinearly saturated streaks and compare them with available experimental results. (paper)

Is it time to retire the genus Rymovirus from the family Potyviridae?

Science.gov (United States)

Ward, Colin W

2017-07-01

In the most recent Report of the International Committee on Taxonomy of Viruses (9 th Report, 2011) (King et al., Virus Taxonomy, Elsevier, New York, 2011) the family Potyviridae is described as comprising seven genera - Potyvirus, Ipomovirus, Macluravirus, Rymovirus, Tritimovirus, Brambyvirus and Bymovirus - despite previous suggestions questioning the validity of the taxonomic status of the genus Rymovirus. Since then the ICTV website records that an eighth genus Poacevirus has been approved for the Potyviridae family. The creation of the genus Rymovirus at the 1990 Potyvirus Taxonomy Workshop in Braunschweig, Germany was based on two things: (i) the incorrect assumption that the genomes of all mite-transmitted members of the Potyviridae would have strong sequence similarity to that of wheat streak mosaic virus, the only mite-transmitted member of this genus for which sequence data were available at that time, and (ii) that the genus should be named Rymovirus (based on a virus for which there was no sequence information) rather than a name based on wheat streak mosaic virus (e.g., "Whestremovirus") because ryegrass mosaic virus (RGMV) was the first mite-transmitted virus to be described and thus should take precedence. When sequence data for RGMV became available in 1995, these data showed that RGMV was very different from wheat streak mosaic virus (WSMV) and should not be assigned to the same genus. WSMV was subsequently re-assigned to a new genus, Tritimovirus, while the genus Rymovirus was retained. In this author's opinion, this retention is not justified, and the removal of Rymovirus as a distinct genus in the family Potyviridae is recommended. There may be merit when assigning it to the genus Potyvirus in sequestering these viruses in a rymovirus subgroup, as is done with other potyviruses, to reflect their different mode of transmission.

Discovery and small RNA profile of Pecan mosaic-associated virus, a novel potyvirus of pecan trees.

Science.gov (United States)

Su, Xiu; Fu, Shuai; Qian, Yajuan; Zhang, Liqin; Xu, Yi; Zhou, Xueping

2016-05-26

A novel potyvirus was discovered in pecan (Carya illinoensis) showing leaf mosaic symptom through the use of deep sequencing of small RNAs. The complete genome of this virus was determined to comprise of 9,310 nucleotides (nt), and shared 24.0% to 58.9% nucleotide similarities with that of other Potyviridae viruses. The genome was deduced to encode a single open reading frame (polyprotein) on the plus strand. Phylogenetic analysis based on the whole genome sequence and coat protein amino acid sequence showed that this virus is most closely related to Lettuce mosaic virus. Using electron microscopy, the typical Potyvirus filamentous particles were identified in infected pecan leaves with mosaic symptoms. Our results clearly show that this virus is a new member of the genus Potyvirus in the family Potyviridae. The virus is tentatively named Pecan mosaic-associated virus (PMaV). Additionally, profiling of the PMaV-derived small RNA (PMaV-sRNA) showed that the most abundant PMaV-sRNAs were 21-nt in length. There are several hotspots for small RNA production along the PMaV genome; two 21-nt PMaV-sRNAs starting at 811 nt and 610 nt of the minus-strand genome were highly repeated.

Pepper yellow mosaic virus, a new potyvirus in sweet-pepper. Archives of Virology

NARCIS (Netherlands)

Inoue-Nagata, A.K.; Fonseca, M.E.N.; Resende, de R.O.; Boiteux, L.S.; Monte, D.C.; Dusi, A.N.; Ávila, de A.C.; Vlugt, van der R.A.A.

2002-01-01

A potyvirus was found causing yellow mosaic and veinal banding in sweetpepper in Central and Southeast Brazil. The sequence analysis of the 3' terminal region of the viral RNA revealed a coat protein of 278 amino acids, followed by 275 nucleotides in the 3'-untranslated region preceding a

Notes on the IMACON 500 streak camera system

International Nuclear Information System (INIS)

Clendenin, J.E.

1985-01-01

The notes provided are intended to supplement the instruction manual for the IMACON 500 streak camera system. The notes cover the streak analyzer, instructions for timing the streak camera, and calibration

Strains of Peru tomato virus infecting cocona (Solanum sessiliflorum), tomato and pepper in Peru with reference to genome evolution in genus Potyvirus.

Science.gov (United States)

Melgarejo, T A; Alminaite, A; Fribourg, C; Spetz, C; Valkonen, J P T

2004-10-01

Two isolates (SL1 and SL6) of Peru tomato virus (PTV, genus Potyvirus) were obtained from cocona plants (Solanum sessiliflorum) growing in Tingo María, the jungle of the Amazon basin in Peru. One PTV isolate (TM) was isolated from a tomato plant (Lycopersicon esculentum) growing in Huaral at the Peruvian coast. The three PTV isolates were readily transmissible by Myzus persicae. Isolate SL1, but not SL6, caused chlorotic lesions in inoculated leaves of Chenopodium amaranticolor and C. quinoa. Isolate TM differed from SL1 and SL6 in causing more severe mosaic symptoms in tomato, and vein necrosis in the leaves of cocona. Pepper cv. Avelar (Capsicum annuum) showed resistance to the PTV isolates SL1 and SL6 but not TM. The 5'- and 3'-proximal sequences of the three PTV isolates were cloned, sequenced and compared to the corresponding sequences of four PTV isolates from pepper, the only host from which PTV isolates have been previously characterised at the molecular level. Phylogenetic analyses on the P1 protein and coat protein amino acid sequences indicated, in accordance with the phenotypic data from indicator hosts, that the PTV isolates from cocona represented a distinguishable strain. In contrast, the PTV isolates from tomato and pepper were not grouped according to the host. Inclusion of the sequence data from the three PTV isolates of this study in a phylogenetic analysis with other PTV isolates and other potyviruses strengthen the membership of PTV in the so-called "PVY subgroup" of Potyvirus. This subgroup of closely related potyvirus species was also distinguishable from other potyviruses by their more uniform sizes of the protein-encoding regions within the polyprotein.

Streak camera recording of interferometer fringes

International Nuclear Information System (INIS)

Parker, N.L.; Chau, H.H.

1977-01-01

The use of an electronic high-speed camera in the streaking mode to record interference fringe motion from a velocity interferometer is discussed. Advantages of this method over the photomultiplier tube-oscilloscope approach are delineated. Performance testing and data for the electronic streak camera are discussed. The velocity profile of a mylar flyer accelerated by an electrically exploded bridge, and the jump-off velocity of metal targets struck by these mylar flyers are measured in the camera tests. Advantages of the streak camera include portability, low cost, ease of operation and maintenance, simplified interferometer optics, and rapid data analysis

Compact Optical Technique for Streak Camera Calibration

International Nuclear Information System (INIS)

Bell, P; Griffith, R; Hagans, K; Lerche, R; Allen, C; Davies, T; Janson, F; Justin, R; Marshall, B; Sweningsen, O

2004-01-01

The National Ignition Facility (NIF) is under construction at the Lawrence Livermore National Laboratory (LLNL) for the U.S. Department of Energy Stockpile Stewardship Program. Optical streak cameras are an integral part of the experimental diagnostics instrumentation. To accurately reduce data from the streak cameras a temporal calibration is required. This article describes a technique for generating trains of precisely timed short-duration optical pulses1 (optical comb generators) that are suitable for temporal calibrations. These optical comb generators (Figure 1) are used with the LLNL optical streak cameras. They are small, portable light sources that produce a series of temporally short, uniformly spaced, optical pulses. Comb generators have been produced with 0.1, 0.5, 1, 3, 6, and 10-GHz pulse trains of 780-nm wavelength light with individual pulse durations of ∼25-ps FWHM. Signal output is via a fiber-optic connector. Signal is transported from comb generator to streak camera through multi-mode, graded-index optical fibers. At the NIF, ultra-fast streak-cameras are used by the Laser Fusion Program experimentalists to record fast transient optical signals. Their temporal resolution is unmatched by any other transient recorder. Their ability to spatially discriminate an image along the input slit allows them to function as a one-dimensional image recorder, time-resolved spectrometer, or multichannel transient recorder. Depending on the choice of photocathode, they can be made sensitive to photon energies from 1.1 eV to 30 keV and beyond. Comb generators perform two important functions for LLNL streak-camera users. First, comb generators are used as a precision time-mark generator for calibrating streak camera sweep rates. Accuracy is achieved by averaging many streak camera images of comb generator signals. Time-base calibrations with portable comb generators are easily done in both the calibration laboratory and in situ. Second, comb signals are applied

MULTIMODAL IMAGING OF ANGIOID STREAKS ASSOCIATED WITH TURNER SYNDROME.

Science.gov (United States)

Chiu, Bing Q; Tsui, Edmund; Hussnain, Syed Amal; Barbazetto, Irene A; Smith, R Theodore

2018-02-13

To report multimodal imaging in a novel case of angioid streaks in a patient with Turner syndrome with 10-year follow-up. Case report of a patient with Turner syndrome and angioid streaks followed at Bellevue Hospital Eye Clinic from 2007 to 2017. Fundus photography, fluorescein angiography, and optical coherence tomography angiography were obtained. Angioid streaks with choroidal neovascularization were noted in this patient with Turner syndrome without other systemic conditions previously correlated with angioid streaks. We report a case of angioid streaks with choroidal neovascularization in a patient with Turner syndrome. We demonstrate that angioid streaks, previously associated with pseudoxanthoma elasticum, Ehlers-Danlos syndrome, Paget disease of bone, and hemoglobinopathies, may also be associated with Turner syndrome, and may continue to develop choroidal neovascularization, suggesting the need for careful ophthalmic examination in these patients.

CARACTERIZACIÓN SEROLÓGICA Y MOLECULAR DE POTYVIRUS ASOCIADOS A LA VIROSIS DEL TOMATE DE ARBOL EN ANTIOQUIA (COLOMBIA

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Mariluz Ayala Vásquez

2010-09-01

Full Text Available El tomate de árbol (Solanum betaceum es una fruta andina altamente nutritiva, con propiedades organolépticas únicas para el procesamiento industrial y el mercado internacional. En Antioquia, este cultivo presenta diferentes problemas fitosanitarios, siendo especialmente limitante la Virosis, causada por un complejo viral del que hacen parte entre otras, especies del género Potyvirus. En este trabajo se evaluaron mediante pruebas de ELISA los niveles de incidencia de este grupo viral en cultivos de siete zonas del departamento de Antioquia (Colombia y se determinó la identidad taxonómica de dos de los potyvirus asociados al cultivo. Las pruebas serológicas muestran la presencia de potyvirus en seis de las siete zonas evaluadas, alcanzando niveles superiores al 80% de incidencia, siendo la excepción los cultivos del municipio de Jardín (8%. Pruebas serológicas con anticuerpos específicos para PVY, identificaron a este virus como uno de los presentes en algunas de las muestras sintomáticas colectadas; mientras que análisis de secuencias de amplicones obtenidos mediante RT-PCR, detectaron un nuevo potyvirus, para el que se propone el nombre Tamarillo Leaf Malformation Virus (TaLMV, aunque es necesario completar la secuencia de su genoma para confirmar la validez de esta hipótesis taxonómica. Esta investigación representa un avance importante en el conocimiento que se tiene en Colombia sobre los agentes causales virales del tomate de árbol. Sin embargo, es necesario profundizar en aspectos como los mecanismos de transmisión de estos virus y los efectos individuales y de su interacción sobre las variedades de este cultivo en el país.

Streak detection and analysis pipeline for optical images

Science.gov (United States)

Virtanen, J.; Granvik, M.; Torppa, J.; Muinonen, K.; Poikonen, J.; Lehti, J.; Säntti, T.; Komulainen, T.; Flohrer, T.

2014-07-01

We describe a novel data processing and analysis pipeline for optical observations of moving objects, either of natural (asteroids, meteors) or artificial origin (satellites, space debris). The monitoring of the space object populations requires reliable acquisition of observational data to support the development and validation of population models, and to build and maintain catalogues of orbital elements. The orbital catalogues are, in turn, needed for the assessment of close approaches (for asteroids, with the Earth; for satellites, with each other) and for the support of contingency situations or launches. For both types of populations, there is also increasing interest to detect fainter objects corresponding to the small end of the size distribution. We focus on the low signal-to-noise (SNR) detection of objects with high angular velocities, resulting in long and faint object trails, or streaks, in the optical images. The currently available, mature image processing algorithms for detection and astrometric reduction of optical data cover objects that cross the sensor field-of-view comparably slowly, and, particularly for satellites, within a rather narrow, predefined range of angular velocities. By applying specific tracking techniques, the objects appear point-like or as short trails in the exposures. However, the general survey scenario is always a 'track-before-detect' problem, resulting in streaks of arbitrary lengths. Although some considerations for low-SNR processing of streak-like features are available in the current image processing and computer vision literature, algorithms are not readily available yet. In the ESA-funded StreakDet (Streak detection and astrometric reduction) project, we develop and evaluate an automated processing pipeline applicable to single images (as compared to consecutive frames of the same field) obtained with any observing scenario, including space-based surveys and both low- and high-altitude populations. The algorithmic

Traveling wave deflector design for femtosecond streak camera

International Nuclear Information System (INIS)

Pei, Chengquan; Wu, Shengli; Luo, Duan; Wen, Wenlong; Xu, Junkai; Tian, Jinshou; Zhang, Minrui; Chen, Pin; Chen, Jianzhong; Liu, Rong

2017-01-01

In this paper, a traveling wave deflection deflector (TWD) with a slow-wave property induced by a microstrip transmission line is proposed for femtosecond streak cameras. The pass width and dispersion properties were simulated. In addition, the dynamic temporal resolution of the femtosecond camera was simulated by CST software. The results showed that with the proposed TWD a femtosecond streak camera can achieve a dynamic temporal resolution of less than 600 fs. Experiments were done to test the femtosecond streak camera, and an 800 fs dynamic temporal resolution was obtained. Guidance is provided for optimizing a femtosecond streak camera to obtain higher temporal resolution.

Traveling wave deflector design for femtosecond streak camera

Energy Technology Data Exchange (ETDEWEB)

Pei, Chengquan; Wu, Shengli [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi’an 710049 (China); Luo, Duan [Xi’an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); University of Chinese Academy of Sciences, Beijing 100049 (China); Wen, Wenlong [Xi’an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); Xu, Junkai [Xi’an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); University of Chinese Academy of Sciences, Beijing 100049 (China); Tian, Jinshou, E-mail: tianjs@opt.ac.cn [Xi’an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006 (China); Zhang, Minrui; Chen, Pin [Xi’an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); University of Chinese Academy of Sciences, Beijing 100049 (China); Chen, Jianzhong [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi’an 710049 (China); Liu, Rong [Xi' an Technological University, Xi' an 710021 (China)

2017-05-21

In this paper, a traveling wave deflection deflector (TWD) with a slow-wave property induced by a microstrip transmission line is proposed for femtosecond streak cameras. The pass width and dispersion properties were simulated. In addition, the dynamic temporal resolution of the femtosecond camera was simulated by CST software. The results showed that with the proposed TWD a femtosecond streak camera can achieve a dynamic temporal resolution of less than 600 fs. Experiments were done to test the femtosecond streak camera, and an 800 fs dynamic temporal resolution was obtained. Guidance is provided for optimizing a femtosecond streak camera to obtain higher temporal resolution.

Complete genome sequence of Paris mosaic necrosis virus, a distinct member of the genus Potyvirus

Science.gov (United States)

The complete genomic sequence of a novel potyvirus was determined from Paris polyphylla var. yunnanensis. Its genomic RNA consists of 9,660 nucleotides (nt) excluding the 3’-terminal poly (A) tail, containing a single open reading frame (ORF) encoding a large polyprotein. The virus shares 52.1-69.7%...

Ultra fast x-ray streak camera

International Nuclear Information System (INIS)

Coleman, L.W.; McConaghy, C.F.

1975-01-01

A unique ultrafast x-ray sensitive streak camera, with a time resolution of 50psec, has been built and operated. A 100A thick gold photocathode on a beryllium vacuum window is used in a modified commerical image converter tube. The X-ray streak camera has been used in experiments to observe time resolved emission from laser-produced plasmas. (author)

Ability of Aphis gossypii and Myzus persicae to Transmit Cucumber mosaic virus in Single and Mixed Infection with Two Potyviruses to Zucchini Squash Eficiência dos afídeos Aphis gossypii e Myzus persicae na transmissão do Cucumber mosaic virus em infecção simples e mista com dois Potyvirus para abobrinha de moita

Directory of Open Access Journals (Sweden)

Zayame Vegette Pinto

2008-06-01

Full Text Available The main objective of this work was to investigate the ability of Aphis gossypii and Myzus persicae to transmit Cucumber mosaic virus (CMV singly and mixed with two potyviruses (Papaya ringspot virus - type W, PRSV-W and Zucchini yellow mosaic virus, ZYMV, to zucchini squash plants (Cucurbita pepo. The results showed that the potyviruses in general were more efficiently transmitted by both species of aphids as compared to CMV. The transmission of PRSV-W, ZYMV and CMV separately was more efficient than in mixture.O objetivo desse trabalho foi estudar a eficiência de Aphis gossypii e Myzus persicae na transmissão do vírus do mosaico do pepino (Cucumber mosaic virus, CMV, isoladamente e em mistura com duas espécies de potyvirus (Vírus do mosaico do mamoeiro = Papaya ringspot virus - type W, PRSV-W e Vírus do mosaico amarelo da abobrinha = Zucchini yellow mosaic virus, ZYMV, para planta-testes de abobrinha de moita (Cucurbita pepo. Os dois potyvirus em geral foram transmitidos com mais eficiência pelas duas espécies de afídeos do que o CMV. A transmissão do PRSV-W, ZYMV e CMV, separadamente, foi mais eficiente do que em mistura.

Dynamic range studies of the RCA streak tube in the LLL streak camera

International Nuclear Information System (INIS)

Thomas, S.W.; Phillips, G.E.

1979-01-01

As indicated by tests on several cameras, the dynamic range of the Lawrence Livermore Laboratory streak-camera system appears to be about two orders of magnitude greater than those reported for other systems for 10- to 200-ps pulses. The lack of a fine mesh grid in the RCA streak tube used in these cameras probably contributes to a lower system dynamic noise and therefore raises the dynamic range. A developmental tube with a mesh grid was tested and supports this conjecture. Order-of-magnitude variations in input slit width do not affect the spot size on the phosphor or the dynamic range of the RCA tube. (author)

Helper component proteinase of the genus Potyvirus is an interaction partner of translation initiation factors eIF(iso)4E and eIF4E and contains a 4E binding motif.

Science.gov (United States)

Ala-Poikela, Marjo; Goytia, Elisa; Haikonen, Tuuli; Rajamäki, Minna-Liisa; Valkonen, Jari P T

2011-07-01

The multifunctional helper component proteinase (HCpro) of potyviruses (genus Potyvirus; Potyviridae) shows self-interaction and interacts with other potyviral and host plant proteins. Host proteins that are pivotal to potyvirus infection include the eukaryotic translation initiation factor eIF4E and the isoform eIF(iso)4E, which interact with viral genome-linked protein (VPg). Here we show that HCpro of Potato virus A (PVA) interacts with both eIF4E and eIF(iso)4E, with interactions with eIF(iso)4E being stronger, as judged by the data of a yeast two-hybrid system assay. A bimolecular fluorescence complementation assay on leaves of Nicotiana benthamiana showed that HCpro from three potyviruses (PVA, Potato virus Y, and Tobacco etch virus) interacted with the eIF(iso)4E and eIF4E of tobacco (Nicotiana tabacum); interactions with eIF(iso)4E and eIF4E of potato (Solanum tuberosum) were weaker. In PVA-infected cells, interactions between HCpro and tobacco eIF(iso)4E were confined to round structures that colocalized with 6K2-induced vesicles. Point mutations introduced to a 4E binding motif identified in the C-terminal region of HCpro debilitated interactions of HCpro with translation initiation factors and were detrimental to the virulence of PVA in plants. The 4E binding motif conserved in HCpro of potyviruses and HCpro-initiation factor interactions suggest new roles for HCpro and/or translation factors in the potyvirus infection cycle.

Streaking tremor in Cascadia

Science.gov (United States)

Vidale, J. E.; Ghosh, A.; Sweet, J. R.; Creager, K. C.; Wech, A.; Houston, H.

2009-12-01

Details of tremor deep in subduction zones is damnably difficult to glimpse because of the lack of crisp initial arrivals, low waveform coherence, uncertain focal mechanisms, and the probability of simultaneous activity across extended regions. Yet such details hold out the best hope to illuminate the unknown mechanisms underlying episodic tremor and slip. Attacking this problem with brute force, we pointed a small, very dense seismic array down at the migration path of a good-sized episodic tremor and slip (ETS) event. In detail, it was an 84-element, 1300-m-aperture temporary seismic array in northern Washington, and the migration path of the May 2008 ETS event was 30-40 km directly underneath. Our beamforming technique tracked the time, incident angle, and azimuth of tremor radiation in unprecedented detail. We located the tremor by assuming it occurs on the subduction interface, estimated relative tremor moment released by each detected tremor window, and mapped it on the interface [Ghosh et al., GRL, 2009]. Fortunately for our ability to image it, the tremor generally appears to emanate from small regions, and we were surprised by how steadily the regions migrated with time. For the first time in Cascadia, we found convergence-parallel transient streaks of tremor migrating at velocities of several tens of km/hr, with movement in both up- and down-dip directions. Similar patterns have been seen in Japan [Shelly, G3, 2007]. This is in contrast to the long-term along-strike marching of tremor at 10 km/day. These streaks tend to propagate steadily and often repeat the same track on the interface multiple times. They light up persistent moment patches on the interface by a combination of increased amplitude and longer residence time within the patches. The up- and down-dip migration dominates the 2 days of tremor most clearly imaged by our array. The tendency of the streaks to fill in bands is the subject of the presentation of Ghosh et al. here. The physical

Characterization of X-ray streak cameras for use on Nova

International Nuclear Information System (INIS)

Kalantar, D.H.; Bell, P.M.; Costa, R.L.; Hammel, B.A.; Landen, O.L.; Orzechowski, T.J.; Hares, J.D.; Dymoke-Bradshaw, A.K.L.

1996-09-01

There are many different types of measurements that require a continuous time history of x-ray emission that can be provided with an x-ray streak camera. In order to properly analyze the images that are recorded with the x-ray streak cameras operated on Nova, it is important to account for the streak characterization of each camera. We have performed a number of calibrations of the streak cameras both on the bench as well as with Nova disk target shots where we use a time modulated laser intensity profile (self-beating of the laser) on the target to generate an x-ray comb. We have measured the streak camera sweep direction and spatial offset, curvature of the electron optics, sweep rate, and magnification and resolution of the electron optics

Multislit streak photography for plasma dynamics studies

International Nuclear Information System (INIS)

Tou, T.Y.; Lee, S.

1988-01-01

A microscope slide with several transparent slits installed in a streak camera is used to record time-resolved two-dimensional information when a curved luminous plasma sheath traverses these slits. Applying this method to the plasma focus experiment, the axial run-down trajectory and the shapes of the plasma sheath at various moments can be obtained from a single streak photograph

A compact large-format streak tube for imaging lidar

Science.gov (United States)

Hui, Dandan; Luo, Duan; Tian, Liping; Lu, Yu; Chen, Ping; Wang, Junfeng; Sai, Xiaofeng; Wen, Wenlong; Wang, Xing; Xin, Liwei; Zhao, Wei; Tian, Jinshou

2018-04-01

The streak tubes with a large effective photocathode area, large effective phosphor screen area, and high photocathode radiant sensitivity are essential for improving the field of view, depth of field, and detectable range of the multiple-slit streak tube imaging lidar. In this paper, a high spatial resolution, large photocathode area, and compact meshless streak tube with a spherically curved cathode and screen is designed and tested. Its spatial resolution reaches 20 lp/mm over the entire Φ28 mm photocathode working area, and the simulated physical temporal resolution is better than 30 ps. The temporal distortion in our large-format streak tube, which is shown to be a non-negligible factor, has a minimum value as the radius of curvature of the photocathode varies. Furthermore, the photocathode radiant sensitivity and radiant power gain reach 41 mA/W and 18.4 at the wavelength of 550 nm, respectively. Most importantly, the external dimensions of our streak tube are no more than Φ60 mm × 110 mm.

Betting Decision Under Break-Streak Pattern: Evidence from Casino Gaming.

Science.gov (United States)

Fong, Lawrence Hoc Nang; So, Amy Siu Ian; Law, Rob

2016-03-01

Cognitive bias is prevalent among gamblers, especially those with gambling problems. Grounded in the heuristics theories, this study contributes to the literature by examining a cognitive bias triggered by the break streak pattern in the casino setting. We postulate that gamblers tend to bet on the latest outcome when there is a break-streak pattern. Moreover, three determinants of the betting decision under break-streak pattern, including the streak length of the alternative outcome, the frequency of the latest outcome, and gender, were identified and examined in this study. A non-participatory observational study was conducted among the Cussec gamblers in a casino in Macao. An analysis of 1229 bets confirms our postulation, particularly when the streak of the alternative outcome is long, the latest outcome is frequent, and the gamblers are females. The findings provide meaningful implications for casino management and public policymakers regarding the minimization of gambling harm.

Picosecond X-ray streak camera dynamic range measurement

Energy Technology Data Exchange (ETDEWEB)

Zuber, C., E-mail: celine.zuber@cea.fr; Bazzoli, S.; Brunel, P.; Gontier, D.; Raimbourg, J.; Rubbelynck, C.; Trosseille, C. [CEA, DAM, DIF, F-91297 Arpajon (France); Fronty, J.-P.; Goulmy, C. [Photonis SAS, Avenue Roger Roncier, BP 520, 19106 Brive Cedex (France)

2016-09-15

Streak cameras are widely used to record the spatio-temporal evolution of laser-induced plasma. A prototype of picosecond X-ray streak camera has been developed and tested by Commissariat à l’Énergie Atomique et aux Énergies Alternatives to answer the Laser MegaJoule specific needs. The dynamic range of this instrument is measured with picosecond X-ray pulses generated by the interaction of a laser beam and a copper target. The required value of 100 is reached only in the configurations combining the slowest sweeping speed and optimization of the streak tube electron throughput by an appropriate choice of high voltages applied to its electrodes.

Compact Optical Technique for Streak Camera Calibration

International Nuclear Information System (INIS)

Curt Allen; Terence Davies; Frans Janson; Ronald Justin; Bruce Marshall; Oliver Sweningsen; Perry Bell; Roger Griffith; Karla Hagans; Richard Lerche

2004-01-01

The National Ignition Facility is under construction at the Lawrence Livermore National Laboratory for the U.S. Department of Energy Stockpile Stewardship Program. Optical streak cameras are an integral part of the experimental diagnostics instrumentation. To accurately reduce data from the streak cameras a temporal calibration is required. This article describes a technique for generating trains of precisely timed short-duration optical pulses that are suitable for temporal calibrations

Transition due to streamwise streaks in a supersonic flat plate boundary layer

Science.gov (United States)

Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

2016-12-01

Transition induced by stationary streaks undergoing transient growth in a supersonic flat plate boundary layer flow is studied using numerical computations. While the possibility of strong transient growth of small-amplitude stationary perturbations in supersonic boundary layer flows has been demonstrated in previous works, its relation to laminar-turbulent transition cannot be established within the framework of linear disturbances. Therefore, this paper investigates the nonlinear evolution of initially linear optimal disturbances that evolve into finite amplitude streaks in the downstream region, and then studies the modal instability of those streaks as a likely cause for the onset of bypass transition. The nonmodal evolution of linearly optimal stationary perturbations in a supersonic, Mach 3 flat plate boundary layer is computed via the nonlinear plane-marching parabolized stability equations (PSE) for stationary perturbations, or equivalently, the perturbation form of parabolized Navier-Stokes equations. To assess the effect of the nonlinear finite-amplitude streaks on transition, the linear form of plane-marching PSE is used to investigate the instability of the boundary layer flow modified by the spanwise periodic streaks. The onset of transition is estimated using an N -factor criterion based on modal amplification of the secondary instabilities of the streaks. In the absence of transient growth disturbances, first mode instabilities in a Mach 3, zero pressure gradient boundary layer reach N =10 at Rex≈107 . However, secondary instability modes of the stationary streaks undergoing transient growth are able to achieve the same N -factor at Rex<2 ×106 when the initial streak amplitude is sufficiently large. In contrast to the streak instabilities in incompressible flows, subharmonic instability modes with twice the fundamental spanwise wavelength of the streaks are found to have higher amplification ratios than the streak instabilities at fundamental

Sweep devices for picosecond image-converter streak cameras

International Nuclear Information System (INIS)

Cunin, B.; Miehe, J.A.; Sipp, B.; Schelev, M.Ya.; Serduchenko, J.N.; Thebault, J.

1979-01-01

Four different sweep devices based on microwave tubes, avalanche transistors, krytrons, and laser-triggered spark gaps are treated in detail. These control circuits are developed for picosecond image-converter cameras and generate sweep pulses providing streak speeds in the range of 10 7 to 5x10 10 cm/sec with maximum time resolution better than 10 -12 sec. Special low-jitter triggering schemes reduce the jitter to less than 5x10 -11 sec. Some problems arising in the construction and matching of the sweep devices and image-streak tube are discussed. Comparative parameters of nanosecond switching elements are presented. The results described can be used by other authors involved in streak camera development

Design of neutron streak camera for fusion diagnostics

International Nuclear Information System (INIS)

Wang, C.L.; Kalibjian, R.; Singh, M.S.

1982-06-01

The D-T burn time for advanced laser-fusion targets is calculated to be very short, 2 . Each fission fragment leaving the cathode generates 400 secondary electrons that are all < 20 eV. These electrons are focussed to a point with an extractor and an anode, and are then purified with an electrostatic deflector. The electron beam is streaked and detected with the standard streak camera techniques. Careful shielding is needed for x-rays from the fusion target and general background. It appears that the neutron streak camera can be a viable and unique tool for studying temporal history of fusion burns in D-T plasmas of a few keV ion temperature

Triggered streak and framing rotating-mirror cameras

International Nuclear Information System (INIS)

Huston, A.E.; Tabrar, A.

1975-01-01

A pulse motor has been developed which enables a mirror to be rotated to speeds in excess of 20,000 rpm with 10 -4 s. High-speed cameras of both streak and framing type have been assembled which incorporate this mirror drive, giving streak writing speeds up to 2,000ms -1 , and framing speeds up to 500,000 frames s -1 , in each case with the capability of triggering the camera from the event under investigation. (author)

Orientation tuning of contrast masking caused by motion streaks.

Science.gov (United States)

Apthorp, Deborah; Cass, John; Alais, David

2010-08-01

We investigated whether the oriented trails of blur left by fast-moving dots (i.e., "motion streaks") effectively mask grating targets. Using a classic overlay masking paradigm, we varied mask contrast and target orientation to reveal underlying tuning. Fast-moving Gaussian blob arrays elevated thresholds for detection of static gratings, both monoptically and dichoptically. Monoptic masking at high mask (i.e., streak) contrasts is tuned for orientation and exhibits a similar bandwidth to masking functions obtained with grating stimuli (∼30 degrees). Dichoptic masking fails to show reliable orientation-tuned masking, but dichoptic masks at very low contrast produce a narrowly tuned facilitation (∼17 degrees). For iso-oriented streak masks and grating targets, we also explored masking as a function of mask contrast. Interestingly, dichoptic masking shows a classic "dipper"-like TVC function, whereas monoptic masking shows no dip and a steeper "handle". There is a very strong unoriented component to the masking, which we attribute to transiently biased temporal frequency masking. Fourier analysis of "motion streak" images shows interesting differences between dichoptic and monoptic functions and the information in the stimulus. Our data add weight to the growing body of evidence that the oriented blur of motion streaks contributes to the processing of fast motion signals.

Angioid streaks, clinical course, complications, and current therapeutic management

Directory of Open Access Journals (Sweden)

Ilias Georgalas

2008-12-01

Full Text Available Ilias Georgalas1, Dimitris Papaconstantinou2, Chrysanthi Koutsandrea2, George Kalantzis2, Dimitris Karagiannis2, Gerasimos Georgopoulos2, Ioannis Ladas21Department of Ophthalmology, “G. Gennimatas” Hospital of Athens, NHS, Athens, Greece; 2Department of Ophthalmology, “G. Gennimatas” Hospital of Athens, University of Athens, Athens, GreeceAbstract: Angioid streaks are visible irregular crack-like dehiscences in Bruch’s membrane that are associated with atrophic degeneration of the overlying retinal pigmented epithelium. Angioid streaks may be associated with pseudoxanthoma elasticum, Paget’s disease, sickle-cell anemia, acromegaly, Ehlers–Danlos syndrome, and diabetes mellitus, but also appear in patients without any systemic disease. Patients with angioid streaks are generally asymptomatic, unless the lesions extend towards the foveola or develop complications such as traumatic Bruch’s membrane rupture or macular choroidal neovascularization (CNV. The visual prognosis in patients with CNV secondary to angioid streaks if untreated, is poor and most treatment modalities, until recently, have failed to limit the devastating impact of CNV in central vision. However, it is likely that treatment with antivascular endothelial growth factor, especially in treatment-naive eyes to yield favorable results in the future and this has to be investigated in future studies.Keywords: angioid streaks, pseudoxanthoma elasticum, choroidal neovascularization

Earth aeolian wind streaks: Comparison to wind data from model and stations

Science.gov (United States)

Cohen-Zada, A. L.; Maman, S.; Blumberg, D. G.

2017-05-01

Wind streak is a collective term for a variety of aeolian features that display distinctive albedo surface patterns. Wind streaks have been used to map near-surface winds and to estimate atmospheric circulation patterns on Mars and Venus. However, because wind streaks have been studied mostly on Mars and Venus, much of the knowledge regarding the mechanism and time frame of their formation and their relationship to the atmospheric circulation cannot be verified. This study aims to validate previous studies' results by a comparison of real and modeled wind data with wind streak orientations as measured from remote-sensing images. Orientations of Earth wind streaks were statistically correlated to resultant drift direction (RDD) values calculated from reanalysis and wind data from 621 weather stations. The results showed good agreement between wind streak orientations and reanalysis RDD (r = 0.78). A moderate correlation was found between the wind streak orientations and the weather station data (r = 0.47); a similar trend was revealed on a regional scale when the analysis was performed by continent, with r ranging from 0.641 in North America to 0.922 in Antarctica. At sites where wind streak orientations did not correspond to the RDDs (i.e., a difference of 45°), seasonal and diurnal variations in the wind flow were found to be responsible for deviation from the global pattern. The study thus confirms that Earth wind streaks were formed by the present wind regime and they are indeed indicative of the long-term prevailing wind direction on global and regional scales.

Streak detection and analysis pipeline for space-debris optical images

Science.gov (United States)

Virtanen, Jenni; Poikonen, Jonne; Säntti, Tero; Komulainen, Tuomo; Torppa, Johanna; Granvik, Mikael; Muinonen, Karri; Pentikäinen, Hanna; Martikainen, Julia; Näränen, Jyri; Lehti, Jussi; Flohrer, Tim

2016-04-01

We describe a novel data-processing and analysis pipeline for optical observations of moving objects, either of natural (asteroids, meteors) or artificial origin (satellites, space debris). The monitoring of the space object populations requires reliable acquisition of observational data, to support the development and validation of population models and to build and maintain catalogues of orbital elements. The orbital catalogues are, in turn, needed for the assessment of close approaches (for asteroids, with the Earth; for satellites, with each other) and for the support of contingency situations or launches. For both types of populations, there is also increasing interest to detect fainter objects corresponding to the small end of the size distribution. The ESA-funded StreakDet (streak detection and astrometric reduction) activity has aimed at formulating and discussing suitable approaches for the detection and astrometric reduction of object trails, or streaks, in optical observations. Our two main focuses are objects in lower altitudes and space-based observations (i.e., high angular velocities), resulting in long (potentially curved) and faint streaks in the optical images. In particular, we concentrate on single-image (as compared to consecutive frames of the same field) and low-SNR detection of objects. Particular attention has been paid to the process of extraction of all necessary information from one image (segmentation), and subsequently, to efficient reduction of the extracted data (classification). We have developed an automated streak detection and processing pipeline and demonstrated its performance with an extensive database of semisynthetic images simulating streak observations both from ground-based and space-based observing platforms. The average processing time per image is about 13 s for a typical 2k-by-2k image. For long streaks (length >100 pixels), primary targets of the pipeline, the detection sensitivity (true positives) is about 90% for

Reliable and repeatable characterization of optical streak cameras

International Nuclear Information System (INIS)

Charest, Michael R. Jr.; Torres, Peter III; Silbernagel, Christopher T.; Kalantar, Daniel H.

2008-01-01

Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility. To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information.

Reliable and Repeatable Characterization of Optical Streak Cameras

International Nuclear Information System (INIS)

Kalantar, D; Charest, M; Torres III, P; Charest, M

2008-01-01

Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information

Reliable and Repeatable Characterization of Optical Streak Cameras

Energy Technology Data Exchange (ETDEWEB)

Michael Charest Jr., Peter Torres III, Christopher Silbernagel, and Daniel Kalantar

2008-10-31

Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information.

Reliable and Repeatable Characterication of Optical Streak Cameras

Energy Technology Data Exchange (ETDEWEB)

Kalantar, D; Charest, M; Torres III, P; Charest, M

2008-05-06

Optical streak cameras are used as primary diagnostics for a wide range of physics and laser experiments at facilities such as the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electrical components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases, the characterization data are applied to the raw data images to correct for the nonlinearities. In order to characterize an optical streak camera, a specific set of data is collected, where the response to defined inputs are recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, and temporal resolution from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information.

Flat-field response and geometric distortion measurements of optical streak cameras

International Nuclear Information System (INIS)

Montgomery, D.S.; Drake, R.P.; Jones, B.A.; Wiedwald, J.D.

1987-01-01

To accurately measure pulse amplitude, shape, and relative time histories of optical signals with an optical streak camera, it is necessary to correct each recorded image for spatially-dependent gain nonuniformity and geometric distortion. Gain nonuniformities arise from sensitivity variations in the streak-tube photocathode, phosphor screen, image-intensifier tube, and image recording system. By using a 1.053-μm, long-pulse, high-power laser to generate a spatially and temporally uniform source as input to the streak camera, the combined effects of flat-field response and geometric distortion can be measured under the normal dynamic operation of cameras with S-1 photocathodes. Additionally, by using the same laser system to generate a train of short pulses that can be spatially modulated at the input of the streak camera, the authors can create a two-dimensional grid of equally-spaced pulses. This allows a dynamic measurement of the geometric distortion of the streak camera. The author discusses the techniques involved in performing these calibrations, present some of the measured results for LLNL optical streak cameras, and will discuss software methods to correct for these effects

Fabry-Perot interferometry using an image-intensified rotating-mirror streak camera

International Nuclear Information System (INIS)

Seitz, W.L.; Stacy, H.L.

1983-01-01

A Fabry-Perot velocity interferometer system is described that uses a modified rotating mirror streak camera to recrod the dynamic fringe positions. A Los Alamos Model 72B rotating-mirror streak camera, equipped with a beryllium mirror, was modified to include a high aperture (f/2.5) relay lens and a 40-mm image-intensifier tube such that the image normally formed at the film plane of the streak camera is projected onto the intensifier tube. Fringe records for thin (0.13 mm) flyers driven by a small bridgewire detonator obtained with a Model C1155-01 Hamamatsu and Model 790 Imacon electronic streak cameras are compared with those obtained with the image-intensified rotating-mirror streak camera (I 2 RMC). Resolution comparisons indicate that the I 2 RMC gives better time resolution than either the Hamamatsu or the Imacon for total writing times of a few microseconds or longer

Approaches to diagnosis and detection of cassava brown streak ...

African Journals Online (AJOL)

Cassava brown streak disease (CBSD) has been a problem in the East African coastal cassava growing areas for more than 70 years. The disease is caused by successful infection with Cassava Brown Streak Virus (CBSV) (Family, Potyviridae: Genus, Ipomovirus). Diagnosis of CBSD has for long been primarily leaf ...

StreakDet data processing and analysis pipeline for space debris optical observations

Science.gov (United States)

Virtanen, Jenni; Flohrer, Tim; Muinonen, Karri; Granvik, Mikael; Torppa, Johanna; Poikonen, Jonne; Lehti, Jussi; Santti, Tero; Komulainen, Tuomo; Naranen, Jyri

We describe a novel data processing and analysis pipeline for optical observations of space debris. The monitoring of space object populations requires reliable acquisition of observational data, to support the development and validation of space debris environment models, the build-up and maintenance of a catalogue of orbital elements. In addition, data is needed for the assessment of conjunction events and for the support of contingency situations or launches. The currently available, mature image processing algorithms for detection and astrometric reduction of optical data cover objects that cross the sensor field-of-view comparably slowly, and within a rather narrow, predefined range of angular velocities. By applying specific tracking techniques, the objects appear point-like or as short trails in the exposures. However, the general survey scenario is always a “track before detect” problem, resulting in streaks, i.e., object trails of arbitrary lengths, in the images. The scope of the ESA-funded StreakDet (Streak detection and astrometric reduction) project is to investigate solutions for detecting and reducing streaks from optical images, particularly in the low signal-to-noise ratio (SNR) domain, where algorithms are not readily available yet. For long streaks, the challenge is to extract precise position information and related registered epochs with sufficient precision. Although some considerations for low-SNR processing of streak-like features are available in the current image processing and computer vision literature, there is a need to discuss and compare these approaches for space debris analysis, in order to develop and evaluate prototype implementations. In the StreakDet project, we develop algorithms applicable to single images (as compared to consecutive frames of the same field) obtained with any observing scenario, including space-based surveys and both low- and high-altitude populations. The proposed processing pipeline starts from the

Flat-field response and geometric distortion measurements of optical streak cameras

International Nuclear Information System (INIS)

Montgomery, D.S.; Drake, R.P.; Jones, B.A.; Wiedwald, J.D.

1987-08-01

To accurately measure pulse amplitude, shape, and relative time histories of optical signals with an optical streak camera, it is necessary to correct each recorded image for spatially-dependent gain nonuniformity and geometric distortion. Gain nonuniformities arise from sensitivity variations in the streak-tube photocathode, phosphor screen, image-intensifier tube, and image recording system. These nonuniformities may be severe, and have been observed to be on the order of 100% for some LLNL optical streak cameras. Geometric distortion due to optical couplings, electron-optics, and sweep nonlinearity not only affects pulse position and timing measurements, but affects pulse amplitude and shape measurements as well. By using a 1.053-μm, long-pulse, high-power laser to generate a spatially and temporally uniform source as input to the streak camera, the combined effects of flat-field response and geometric distortion can be measured under the normal dynamic operation of cameras with S-1 photocathodes. Additionally, by using the same laser system to generate a train of short pulses that can be spatially modulated at the input of the streak camera, we can effectively create a two-dimensional grid of equally-spaced pulses. This allows a dynamic measurement of the geometric distortion of the streak camera. We will discuss the techniques involved in performing these calibrations, will present some of the measured results for LLNL optical streak cameras, and will discuss software methods to correct for these effects. 6 refs., 6 figs

Characterization results from several commercial soft X-ray streak cameras

Science.gov (United States)

Stradling, G. L.; Studebaker, J. K.; Cavailler, C.; Launspach, J.; Planes, J.

The spatio-temporal performance of four soft X-ray streak cameras has been characterized. The objective in evaluating the performance capability of these instruments is to enable us to optimize experiment designs, to encourage quantitative analysis of streak data and to educate the ultra high speed photography and photonics community about the X-ray detector performance which is available. These measurements have been made collaboratively over the space of two years at the Forge pulsed X-ray source at Los Alamos and at the Ketjak laser facility an CEA Limeil-Valenton. The X-ray pulse lengths used for these measurements at these facilities were 150 psec and 50 psec respectively. The results are presented as dynamically-measured modulation transfer functions. Limiting temporal resolution values were also calculated. Emphasis is placed upon shot noise statistical limitations in the analysis of the data. Space charge repulsion in the streak tube limits the peak flux at ultra short experiments duration times. This limit results in a reduction of total signal and a decrease in signal to no ise ratio in the streak image. The four cameras perform well with 20 1p/mm resolution discernable in data from the French C650X, the Hadland X-Chron 540 and the Hamamatsu C1936X streak cameras. The Kentech X-ray streak camera has lower modulation and does not resolve below 10 1p/mm but has a longer photocathode.

Postprocessing method to clean up streaks due to noisy detectors

International Nuclear Information System (INIS)

Tuy, H.K.; Mattson, R.A.

1990-01-01

This paper reports that occasionally, one of the thousands of detectors in a CT scanner will intermittently produce erroneous data, creating streaks in the reconstructed image. The authors propose a method to identify and clean up the streaks automatically. To find the rays along which the data values are bad, a binary image registering the edges of the original image is created. Forward projection is applied to the binary image to single out edges along rays. Data along views containing the identified bad rays are estimated by means of forward projecting the original image. Back projection of the negative of the estimated convolved data along these views onto the streaky image will remove streaks from the image. Image enhancement is achieved by means of back projecting the convolved data estimated from the image after the streak removal along views of bad rays

Control of Vascular Streak Dieback Disease of Cocoa with Flutriafol Fungicides

Directory of Open Access Journals (Sweden)

Febrilia Nur'aini

2014-12-01

Full Text Available Vascular streak dieback caused by the fungus Oncobasidium theobromae is one of the important diseases in cocoa crop in Indonesia. One approach to control the disease is by using fungicides. The aim of this research was to determine the effect of class triazole fungicides to the intensity of the vascular streak dieback disease on cocoa seedling phase, immature and mature cocoa. Experiments were conducted in Kotta Blater, PTPN XII and Kaliwining, Indonesian  Coffee and Cocoa Research Institute. Flutriafol 250 g/l with a concentration 0,05%, 0,1% and 0,15% foliar sprayed on cocoa seedlings, immature and mature cocoa. Active compound combination of Azoxystrobin and Difenoconazole with 0,1% concentration used as a comparation fungicides. The result showed that Flutriafol with 0,05%, 0,1% and 0,15% concentration and Azoxystrobin & Difenoconazol with 0,1% concentration could suppress the vascular streak dieback disease on seedlings. On immature plants, the application of Flutriafol was not effectively suppress the vascular streak dieback disease whereas the fungicide comparison could suppress with the efficacy level of 46.22%. On mature plants,both of fungicides could not suppress the vascular streak dieback disease. Key words: Fungicide, cocoa, vascular streak dieback, triazole, flutriafol, azoxystrobin+difenoconazol

Improved approach to characterizing and presenting streak camera performance

International Nuclear Information System (INIS)

Wiedwald, J.D.; Jones, B.A.

1985-01-01

The performance of a streak camera recording system is strongly linked to the technique used to amplify, detect and quantify the streaked image. At the Lawrence Livermore National Laboratory (LLNL) streak camera images have been recorded both on film and by fiber-optically coupling to charge-coupled devices (CCD's). During the development of a new process for recording these images (lens coupling the image onto a cooled CCD) the definitions of important performance characteristics such as resolution and dynamic range were re-examined. As a result of this development, these performance characteristics are now presented to the streak camera user in a more useful format than in the past. This paper describes how these techniques are used within the Laser Fusion Program at LLNL. The system resolution is presented as a modulation transfer function, including the seldom reported effects that flare and light scattering have at low spatial frequencies. Data are presented such that a user can adjust image intensifier gain and pixel averaging to optimize the useful dynamic range in any particular application

Soft x-ray streak camera for laser fusion applications

International Nuclear Information System (INIS)

Stradling, G.L.

1981-04-01

This thesis reviews the development and significance of the soft x-ray streak camera (SXRSC) in the context of inertial confinement fusion energy development. A brief introduction of laser fusion and laser fusion diagnostics is presented. The need for a soft x-ray streak camera as a laser fusion diagnostic is shown. Basic x-ray streak camera characteristics, design, and operation are reviewed. The SXRSC design criteria, the requirement for a subkilovolt x-ray transmitting window, and the resulting camera design are explained. Theory and design of reflector-filter pair combinations for three subkilovolt channels centered at 220 eV, 460 eV, and 620 eV are also presented. Calibration experiments are explained and data showing a dynamic range of 1000 and a sweep speed of 134 psec/mm are presented. Sensitivity modifications to the soft x-ray streak camera for a high-power target shot are described. A preliminary investigation, using a stepped cathode, of the thickness dependence of the gold photocathode response is discussed. Data from a typical Argus laser gold-disk target experiment are shown

Laparoscopic Removal of Streak Gonads in Turner Syndrome.

Science.gov (United States)

Mandelberger, Adrienne; Mathews, Shyama; Andikyan, Vaagn; Chuang, Linus

To demonstrate the skills necessary for complete resection of bilateral streak gonads in Turner syndrome. Video case presentation with narration highlighting the key techniques used. The video was deemed exempt from formal review by our institutional review board. Turner syndrome is a form of gonadal dysgenesis that affects 1 in 2500 live births. Patients often have streak gonads and may present with primary amenorrhea or premature ovarian failure. Patients with a mosaic karyotype that includes a Y chromosome are at increased risk for gonadoblastoma and subsequent transformation into malignancy. Gonadectomy is recommended for these patients, typically at adolescence. Streak gonads can be difficult to identify, and tissue margins are often in close proximity to critical retroperitoneal structures. Resection can be technically challenging and requires a thorough understanding of retroperitoneal anatomy and precise dissection techniques to ensure complete removal. Laparoscopic approach to bilateral salpingo-oophorectomy of streak gonads. Retroperitoneal dissection and ureterolysis are performed, with the aid of the Ethicon Harmonic Ace, to ensure complete gonadectomy. Careful and complete resection of gonadal tissue in the hands of a skilled laparoscopic surgeon is key for effective cancer risk reduction surgery in Turner syndrome mosaics. Copyright © 2016 AAGL. Published by Elsevier Inc. All rights reserved.

Stabilization of the hypersonic boundary layer by finite-amplitude streaks

Science.gov (United States)

Ren, Jie; Fu, Song; Hanifi, Ardeshir

2016-02-01

Stabilization of two-dimensional disturbances in hypersonic boundary layer flows by finite-amplitude streaks is investigated using nonlinear parabolized stability equations. The boundary-layer flows at Mach numbers 4.5 and 6.0 are studied in which both first and second modes are supported. The streaks considered here are driven either by the so-called optimal perturbations (Klebanoff-type) or the centrifugal instability (Görtler-type). When the streak amplitude is in an appropriate range, i.e., large enough to modulate the laminar boundary layer but low enough to not trigger secondary instability, both first and second modes can effectively be suppressed.

Effects of Hot Streak Shape on Rotor Heating in a High-Subsonic Single-Stage Turbine

Science.gov (United States)

Dorney, Daniel J.; Gundy-Burlet, Karen L.; Norvig, Peter (Technical Monitor)

1999-01-01

Experimental data have shown that combustor temperature non-uniformities can lead to the excessive heating of first-stage rotor blades in turbines. This heating of the rotor blades can lead to thermal fatigue and degrade turbine performance. The results of recent studies have shown that variations in the circumferential location (clocking) of the hot streak relative to the first-stage vane airfoils can be used to minimize the adverse effects of the hot streak. The effects of the hot streak/airfoil count ratio on the heating patterns of turbine airfoils have also been evaluated. In the present investigation, three-dimensional unsteady Navier-Stokes simulations have been performed for a single-stage high-pressure turbine operating in high subsonic flow. In addition to a simulation of the baseline turbine, simulations have been performed for circular and elliptical hot streaks of varying sizes in an effort to represent different combustor designs. The predicted results for the baseline simulation show good agreement with the available experimental data. The results of the hot streak simulations indicate: that a) elliptical hot streaks mix more rapidly than circular hot streaks, b) for small hot streak surface area the average rotor temperature is not a strong function of hot streak temperature ratio or shape, and c) hot streaks with larger surface area interact with the secondary flows at the rotor hub endwall, generating an additional high temperature region.

Plum pox virus and sharka: a model potyvirus and a major disease.

Science.gov (United States)

García, Juan Antonio; Glasa, Miroslav; Cambra, Mariano; Candresse, Thierry

2014-04-01

Plum pox virus (PPV) is a member of the genus Potyvirus in the family Potyviridae. PPV diversity is structured into at least eight monophyletic strains. First discovered in Bulgaria, PPV is nowadays present in most of continental Europe (with an endemic status in many central and southern European countries) and has progressively spread to many countries on other continents. Typical of potyviruses, the PPV genome is a positive-sense single-stranded RNA (ssRNA), with a protein linked to its 5' end and a 3'-terminal poly A tail. It is encapsidated by a single type of capsid protein (CP) in flexuous rod particles and is translated into a large polyprotein which is proteolytically processed in at least 10 final products: P1, HCPro, P3, 6K1, CI, 6K2, VPg, NIapro, NIb and CP. In addition, P3N-PIPO is predicted to be produced by a translational frameshift. PPV causes sharka, the most damaging viral disease of stone fruit trees. It also infects wild and ornamental Prunus trees and has a large experimental host range in herbaceous species. PPV spreads over long distances by uncontrolled movement of plant material, and many species of aphid transmit the virus locally in a nonpersistent manner. A few natural sources of resistance to PPV have been found so far in Prunus species, which are being used in classical breeding programmes. Different genetic engineering approaches are being used to generate resistance to PPV, and a transgenic plum, 'HoneySweet', transformed with the viral CP gene, has demonstrated high resistance to PPV in field tests in several countries and has obtained regulatory approval in the USA. © 2013 BSPP AND JOHN WILEY & SONS LTD.

Improvements in Off-Center Focusing in an X-ray Streak Camera

International Nuclear Information System (INIS)

McDonald, J W; Weber, F; Holder, J P; Bell, P M

2003-01-01

Due to the planar construction of present x-ray streak tubes significant off-center defocusing is observed in both static and dynamic images taken with one-dimensional resolution slits. Based on the streak tube geometry curved photocathodes with radii of curvature ranging from 3.5 to 18 inches have been fabricated. We report initial off-center focusing performance data on the evaluation of these ''improved'' photocathodes in an X-ray streak camera and an update on the theoretical simulations to predict the optimum cathode curvature

Diving-related visual loss in the setting of angioid streaks: report of two cases.

Science.gov (United States)

Angulo Bocco, Maria I; Spielberg, Leigh; Coppens, Greet; Catherine, Janet; Verougstraete, Claire; Leys, Anita M

2012-01-01

The purpose of this study was to report diving-related visual loss in the setting of angioid streaks. Observational case reports of two patients with angioid streaks suffering sudden visual loss immediately after diving. Two young adult male patients presented with visual loss after diving headfirst. Funduscopy revealed angioid streaks, peau d'orange, subretinal hemorrhages, and ruptures of Bruch membrane. Choroidal neovascularization developed during follow-up. Both patients had an otherwise uneventful personal and familial medical history. In patients with angioid streaks, diving headfirst can lead to subretinal hemorrhages and traumatic ruptures in Bruch membrane and increase the risk of maculopathy. Ophthalmologists should caution patients with angioid streaks against diving headfirst.

A Functional Link between RNA Replication and Virion Assembly in the Potyvirus Plum Pox Virus.

Science.gov (United States)

Gallo, Araiz; Valli, Adrian; Calvo, María; García, Juan Antonio

2018-05-01

Accurate assembly of viral particles in the potyvirus Plum pox virus (PPV) has been shown to depend on the contribution of the multifunctional viral protein HCPro. In this study, we show that other viral factors, in addition to the capsid protein (CP) and HCPro, are necessary for the formation of stable PPV virions. The CP produced in Nicotiana benthamiana leaves from a subviral RNA termed LONG, which expresses a truncated polyprotein that lacks P1 and HCPro, together with HCPro supplied in trans , was assembled into virus-like particles and remained stable after in vitro incubation. In contrast, deletions in multiple regions of the LONG coding sequence prevented the CP stabilization mediated by HCPro. In particular, we demonstrated that the first 178 amino acids of P3, but not a specific nucleotide sequence coding for them, are required for CP stability and proper assembly of PPV particles. Using a sequential coagroinfiltration assay, we observed that the subviral LONG RNA replicates and locally spreads in N. benthamiana leaves expressing an RNA silencing suppressor. The analysis of the effect of both point and deletion mutations affecting RNA replication in LONG and full-length PPV demonstrated that this process is essential for the assembly of stable viral particles. Interestingly, in spite of this requirement, the CP produced by a nonreplicating viral RNA can be stably assembled into virions as long as it is coexpressed with a replication-proficient RNA. Altogether, these results highlight the importance of coupling encapsidation to other viral processes to secure a successful infection. IMPORTANCE Viruses of the family Potyviridae are among the most dangerous threats for basically every important crop, and such socioeconomical relevance has made them a subject of many research studies. In spite of this, very little is currently known about proteins and processes controlling viral genome encapsidation by the coat protein. In the case of Plum pox virus (genus

Evaluation of weeds as possible hosts of the potyviruses associated with tree tomato (solanum betaceum cav.) viroses

OpenAIRE

Sierra S., Adela; Gil R., José Fernando; Patiño H., Luis Fernando; González J., Elena Paola

2012-01-01

To determine possible weed hosts of potyviruses associated with the disease known as “tree tomato virus disease” in Antioquia department (Colombia), a sampling was conducted to identify weed species commonly found ...

A time-resolved image sensor for tubeless streak cameras

Science.gov (United States)

Yasutomi, Keita; Han, SangMan; Seo, Min-Woong; Takasawa, Taishi; Kagawa, Keiichiro; Kawahito, Shoji

2014-03-01

This paper presents a time-resolved CMOS image sensor with draining-only modulation (DOM) pixels for tube-less streak cameras. Although the conventional streak camera has high time resolution, the device requires high voltage and bulky system due to the structure with a vacuum tube. The proposed time-resolved imager with a simple optics realize a streak camera without any vacuum tubes. The proposed image sensor has DOM pixels, a delay-based pulse generator, and a readout circuitry. The delay-based pulse generator in combination with an in-pixel logic allows us to create and to provide a short gating clock to the pixel array. A prototype time-resolved CMOS image sensor with the proposed pixel is designed and implemented using 0.11um CMOS image sensor technology. The image array has 30(Vertical) x 128(Memory length) pixels with the pixel pitch of 22.4um. .

Spatiotemporal mechanical variation reveals critical role for rho kinase during primitive streak morphogenesis.

Science.gov (United States)

Henkels, Julia; Oh, Jaeho; Xu, Wenwei; Owen, Drew; Sulchek, Todd; Zamir, Evan

2013-02-01

Large-scale morphogenetic movements during early embryo development are driven by complex changes in biochemical and biophysical factors. Current models for amniote primitive streak morphogenesis and gastrulation take into account numerous genetic pathways but largely ignore the role of mechanical forces. Here, we used atomic force microscopy (AFM) to obtain for the first time precise biomechanical properties of the early avian embryo. Our data reveal that the primitive streak is significantly stiffer than neighboring regions of the epiblast, and that it is stiffer than the pre-primitive streak epiblast. To test our hypothesis that these changes in mechanical properties are due to a localized increase of actomyosin contractility, we inhibited actomyosin contractility via the Rho kinase (ROCK) pathway using the small-molecule inhibitor Y-27632. Our results using several different assays show the following: (1) primitive streak formation was blocked; (2) the time-dependent increase in primitive streak stiffness was abolished; and (3) convergence of epiblast cells to the midline was inhibited. Taken together, our data suggest that actomyosin contractility is necessary for primitive streak morphogenesis, and specifically, ROCK plays a critical role. To better understand the underlying mechanisms of this fundamental process, future models should account for the findings presented in this study.

Structured photocathodes for improved high-energy x-ray efficiency in streak cameras

Energy Technology Data Exchange (ETDEWEB)

Opachich, Y. P., E-mail: opachiyp@nv.doe.gov; Huffman, E.; Koch, J. A. [National Security Technologies, LLC, Livermore, California 94551 (United States); Bell, P. M.; Bradley, D. K.; Hatch, B.; Landen, O. L.; MacPhee, A. G.; Nagel, S. R. [Lawrence Livermore National Laboratory, Livermore, California 94551 (United States); Chen, N.; Gopal, A.; Udin, S. [Nanoshift LLC, Emeryville, California 94608 (United States); Feng, J. [Lawrence Berkeley National Laboratory, Berkeley, California 94720 (United States); Hilsabeck, T. J. [General Atomics, San Diego, California 92121 (United States)

2016-11-15

We have designed and fabricated a structured streak camera photocathode to provide enhanced efficiency for high energy X-rays (1–12 keV). This gold coated photocathode was tested in a streak camera and compared side by side against a conventional flat thin film photocathode. Results show that the measured electron yield enhancement at energies ranging from 1 to 10 keV scales well with predictions, and that the total enhancement can be more than 3×. The spatial resolution of the streak camera does not show degradation in the structured region. We predict that the temporal resolution of the detector will also not be affected as it is currently dominated by the slit width. This demonstration with Au motivates exploration of comparable enhancements with CsI and may revolutionize X-ray streak camera photocathode design.

Natural co-infection of Solanum tuberosum crops by the Potato yellow vein virus and potyvirus in Colombia

Directory of Open Access Journals (Sweden)

Angela Villamil-Garzón

2014-08-01

Full Text Available The Potato yellow vein virus (PYVV, a Crinivirus with an RNA tripartite genome, is the causal agent of the potato yellow vein disease, reported in Colombian since 1950, with yield reductions of up to 50%. Co-infection of two or more viruses is common in nature and can be associated with differences in virus accumulation and symptom expression. No evidence of mixed infection between PYVV and other viruses has been reported. In this study, eight plants showing yellowing PYVV symptoms: four Solanum tuberosum Group Phureja (P and four Group Andigena (A, were collected in Cundinamarca, Colombia to detect mixed infection in the isolates using next generation sequencing (NGS. The Potato virus Y (PVY complete genome (similar to N strain and the Potato virus V (PVV partial genomes were detected using NGS and re-confirmed by RT-PCR. Preliminary field screening in a large sample showed that PYVV and PVY co-infect potato plants with a prevalence of 21% within the P group and 23% within the A group. This is the first report of co-infection of PYVV and potyvirus in Colombia and with the use of NGS. Considering that potyviruses enhance symptom severity and/or yield reductions in mixed infections, our results may be relevant for disease diagnosis, breeding programs and tuber certification.

Characteristics of uranium oxide cathode for neutron streak camera

International Nuclear Information System (INIS)

Niki, H.; Itoga, K.; Yamanaka, M.; Yamanaka, T.; Yamanaka, C.

1986-01-01

In laser fusion research, time-resolved neutron measurements require 20ps resolution in order to obtain the time history of the D-T burn. Uranium oxide was expected to be a sensitive material as a cathode of a neutron streak camera because of its large fission cross section. The authors report their measurements of some characteristics of the uranium oxide cathode connected to a conventional streak tube. 14 MeV neutron signal were observed as the bright spots on a TV monitor using a focus mode opration. Detection efficiency was ∼ 1 x 10 -6 for 1 μm thick cathode. Each signal consisted of more than several tens of components, which were corresponding to the secondary electrons dragged out from the cathode by a fission fragment. Time resolution is thought to be limited mainly by the transit time spread of the secondary electrons. 14ps resolution was obtained by a streak mode operation for a single fission event

Electro-optical design of a long slit streak tube

Science.gov (United States)

Tian, Liping; Tian, Jinshou; Wen, Wenlong; Chen, Ping; Wang, Xing; Hui, Dandan; Wang, Junfeng

2017-11-01

A small size and long slit streak tube with high spatial resolution was designed and optimized. Curved photocathode and screen were adopted to increase the photocathode working area and spatial resolution. High physical temporal resolution obtained by using a slit accelerating electrode. Deflection sensitivity of the streak tube was improved by adopting two-folded deflection plates. The simulations indicate that the photocathode effective working area can reach 30mm × 5mm. The static spatial resolution is higher than 40lp/mm and 12lp/mm along scanning and slit directions respectively while the physical temporal resolution is higher than 60ps. The magnification is 0.75 and 0.77 in scanning and slit directions. And also, the deflection sensitivity is as high as 37mm/kV. The external dimension of the streak tube are only ∅74mm×231mm. Thus, it can be applied to laser imaging radar system for large field of view and high range precision detection.

Slope streaks on Mars: A new “wet” mechanism

Science.gov (United States)

Kreslavsky, Mikhail A.; Head, James W.

2009-06-01

Slope steaks are one of the most intriguing modern phenomena observed on Mars. They have been mostly interpreted as some specific type of granular flow. We propose another mechanism for slope streak formation on Mars. It involves natural seasonal formation of a modest amount of highly concentrated chloride brines within a seasonal thermal skin, and runaway propagation of percolation fronts. Given the current state of knowledge of temperature regimes and the composition and structure of the surface layer in the slope streak regions, this mechanism is consistent with the observational constraints; it requires an assumption that a significant part of the observed chlorine to be in form of calcium and ferric chloride, and a small part of the observed hydrogen to be in form of water ice. This "wet" mechanism has a number of appealing advantages in comparison to the widely accepted "dry" granular flow mechanism. Potential tests for the "wet" mechanism include better modeling of the temperature regime and observations of the seasonality of streak formation.

Pea Streak Virus Recorded in Europe

Czech Academy of Sciences Publication Activity Database

Sarkisova, Tatiana; Bečková, M.; Fránová, Jana; Petrzik, Karel

2016-01-01

Roč. 52, č. 3 (2016), s. 164-166 ISSN 1212-2580 R&D Projects: GA MZe QH71145 Institutional support: RVO:60077344 Keywords : Pea streak virus * alfalfa * carlavirus * partial sequence Subject RIV: EE - Microbiology, Virology Impact factor: 0.742, year: 2016

Novel ATPase activity of the polyprotein intermediate, Viral Protein genome-linked-Nuclear Inclusion-a protease, of Pepper vein banding potyvirus

International Nuclear Information System (INIS)

Mathur, Chhavi; Savithri, Handanahal S.

2012-01-01

Highlights: ► Pepper vein banding potyvirus VPg harbors Walker motifs. ► VPg exhibits ATPase activity in the presence of NIa-Pro. ► Plausible structural and functional interplay between VPg and NIa-Pro. ► Functional relevance of prolonged presence of VPg-Pro during infection. -- Abstract: Potyviruses temporally regulate their protein function by polyprotein processing. Previous studies have shown that VPg (Viral Protein genome-linked) of Pepper vein banding virus interacts with the NIa-Pro (Nuclear Inclusion-a protease) domain, and modulates the kinetics of the protease. In the present study, we report for the first time that VPg harbors the Walker motifs A and B, and the presence of NIa-Pro, especially in cis (cleavage site (E191A) VPg-Pro mutant), is essential for manifestation of the ATPase activity. Mutation of Lys47 (Walker motif A) and Asp88:Glu89 (Walker motif B) to alanine in E191A VPg-Pro lead to reduced ATPase activity, confirming that this activity was inherent to VPg. We propose that potyviral VPg, established as an intrinsically disordered domain, undergoes plausible structural alterations upon interaction with globular NIa-Pro which induces the ATPase activity.

Reliable and Repeatable Characterization of Optical Streak Cameras

International Nuclear Information System (INIS)

Michael R. Charest, Peter Torres III, Christopher Silbernagel

2008-01-01

Optical streak cameras are used as primary diagnostics for a wide range of physics and laser performance verification experiments at the National Ignition Facility (NIF). To meet the strict accuracy requirements needed for these experiments, the systematic nonlinearities of the streak cameras (attributed to nonlinearities in the optical and electronic components that make up the streak camera system) must be characterized. In some cases the characterization information is used as a guide to help determine how experiment data should be taken. In other cases the characterization data is used to 'correct' data images, to remove some of the nonlinearities. In order to obtain these camera characterizations, a specific data set is collected where the response to specific known inputs is recorded. A set of analysis software routines has been developed to extract information such as spatial resolution, dynamic range, temporal resolution, etc., from this data set. The routines are highly automated, requiring very little user input and thus provide very reliable and repeatable results that are not subject to interpretation. An emphasis on quality control has been placed on these routines due to the high importance of the camera characterization information

The Arabidopsis eukaryotic initiation factor (iso)4E is dispensable for plant growth but required for susceptibility to potyviruses.

Science.gov (United States)

Duprat, Anne; Caranta, Carole; Revers, Frédéric; Menand, Benoît; Browning, Karen S; Robaglia, Christophe

2002-12-01

An Arabidopsis thaliana line bearing a transposon insertion in the gene coding for the isozyme form of the plant-specific cap-binding protein, eukaryotic initiation factor (iso) 4E (eIF (iso) 4E), has been isolated. This mutant line completely lacks both eIF(iso)4E mRNA and protein, but was found to have a phenotype and fertility indistinguishable from wild-type plants under standard laboratory conditions. In contrast, the amount of the related eIF4E protein was found to increase in seedling extracts. Furthermore, polysome analysis shows that the mRNA encoding eIF4E was being translated at increased levels. Given the known interaction between cap-binding proteins and potyviral genome-linked proteins (VPg), this plant line was challenged with two potyviruses, Turnip mosaic virus (TuMV) and Lettuce mosaic virus (LMV) and was found resistant to both, but not to the Nepovirus, Tomato black ring virus (TBRV) and the Cucumovirus, Cucumber mosaic virus (CMV). Together with previous data showing that the VPg-eIF4E interaction is necessary for virus infectivity and upregulates genome amplification, this shows that the eIF4E proteins are specifically recruited for the replication cycle of potyviruses.

Laser-based terahertz-field-driven streak camera for the temporal characterization of ultrashort processes

Energy Technology Data Exchange (ETDEWEB)

Schuette, Bernd

2011-09-15

In this work, a novel laser-based terahertz-field-driven streak camera is presented. It allows for a pulse length characterization of femtosecond (fs) extreme ultraviolet (XUV) pulses by a cross-correlation with terahertz (THz) pulses generated with a Ti:sapphire laser. The XUV pulses are emitted by a source of high-order harmonic generation (HHG) in which an intense near-infrared (NIR) fs laser pulse is focused into a gaseous medium. The design and characterization of a high-intensity THz source needed for the streak camera is also part of this thesis. The source is based on optical rectification of the same NIR laser pulse in a lithium niobate crystal. For this purpose, the pulse front of the NIR beam is tilted via a diffraction grating to achieve velocity matching between NIR and THz beams within the crystal. For the temporal characterization of the XUV pulses, both HHG and THz beams are focused onto a gas target. The harmonic radiation creates photoelectron wavepackets which are then accelerated by the THz field depending on its phase at the time of ionization. This principle adopted from a conventional streak camera and now widely used in attosecond metrology. The streak camera presented here is an advancement of a terahertz-field-driven streak camera implemented at the Free Electron Laser in Hamburg (FLASH). The advantages of the laser-based streak camera lie in its compactness, cost efficiency and accessibility, while providing the same good quality of measurements as obtained at FLASH. In addition, its flexibility allows for a systematic investigation of streaked Auger spectra which is presented in this thesis. With its fs time resolution, the terahertz-field-driven streak camera thereby bridges the gap between attosecond and conventional cameras. (orig.)

Laser-based terahertz-field-driven streak camera for the temporal characterization of ultrashort processes

International Nuclear Information System (INIS)

Schuette, Bernd

2011-09-01

In this work, a novel laser-based terahertz-field-driven streak camera is presented. It allows for a pulse length characterization of femtosecond (fs) extreme ultraviolet (XUV) pulses by a cross-correlation with terahertz (THz) pulses generated with a Ti:sapphire laser. The XUV pulses are emitted by a source of high-order harmonic generation (HHG) in which an intense near-infrared (NIR) fs laser pulse is focused into a gaseous medium. The design and characterization of a high-intensity THz source needed for the streak camera is also part of this thesis. The source is based on optical rectification of the same NIR laser pulse in a lithium niobate crystal. For this purpose, the pulse front of the NIR beam is tilted via a diffraction grating to achieve velocity matching between NIR and THz beams within the crystal. For the temporal characterization of the XUV pulses, both HHG and THz beams are focused onto a gas target. The harmonic radiation creates photoelectron wavepackets which are then accelerated by the THz field depending on its phase at the time of ionization. This principle adopted from a conventional streak camera and now widely used in attosecond metrology. The streak camera presented here is an advancement of a terahertz-field-driven streak camera implemented at the Free Electron Laser in Hamburg (FLASH). The advantages of the laser-based streak camera lie in its compactness, cost efficiency and accessibility, while providing the same good quality of measurements as obtained at FLASH. In addition, its flexibility allows for a systematic investigation of streaked Auger spectra which is presented in this thesis. With its fs time resolution, the terahertz-field-driven streak camera thereby bridges the gap between attosecond and conventional cameras. (orig.)

Detection, Occurrence, and Survey of Rice Stripe and Black-Streaked Dwarf Diseases in Zhejiang Province, China

OpenAIRE

Heng-mu ZHANG; Hua-di WANG; Jian YANG; Michael J ADAMS; Jian-ping CHEN

2013-01-01

The major viral diseases that occur on rice plants in Zhejiang Province, eastern China, are stripe and rice black-streaked dwarf diseases. Rice stripe disease is only caused by rice stripe tenuivirus (RSV), while rice black-streaked dwarf disease can be caused by rice black-streaked dwarf fijivirus (RBSDV) and/or southern rice black-streaked dwarf fijivirus (SRBSDV). Here we review the characterization of these viruses, methods for their detection, and extensive surveys showing their occurren...

Novel technique for addressing streak artifact in gated dual-source MDCT angiography utilizing ECG-editing

Energy Technology Data Exchange (ETDEWEB)

Meyer, Laura T.; Boll, Daniel T. [Duke University Medical Center, Department of Radiology, Box 3808, Durham, NC (United States)

2008-11-15

Streak artifact is an important source of image degradation in computed tomographic imaging. In coronary MDCT angiography, streak artifact from pacemaker leads in the SVC can render segments of the right coronary artery uninterpretable. With current technology in clinical practice, there is no effective way to eliminate streak artifact in coronary MDCT angiography entirely. We propose a technique to minimize the impact of streak artifact in retrospectively gated coronary MDCT angiography by utilizing small shifts in the reconstruction window. In our experience, previously degraded portions of the coronary vasculature were able to be well evaluated using this technique. (orig.)

The effect of wall temperature distribution on streaks in compressible turbulent boundary layer

Science.gov (United States)

Zhang, Zhao; Tao, Yang; Xiong, Neng; Qian, Fengxue

2018-05-01

The thermal boundary condition at wall is very important for the compressible flow due to the coupling of the energy equation, and a lot of research works about it were carried out in past decades. In most of these works, the wall was assumed as adiabatic or uniform isothermal surface; the flow over a thermal wall with some special temperature distribution was seldom studied. Lagha studied the effect of uniform isothermal wall on the streaks, and pointed out that higher the wall temperature is, the longer the streak (POF, 2011, 23, 015106). So, we designed streamwise stripes of wall temperature distribution on the compressible turbulent boundary layer at Mach 3.0 to learn the effect on the streaks by means of direct numerical simulation in this paper. The mean wall temperature is equal to the adiabatic case approximately, and the width of the temperature stripes is in the same order as the width of the streaks. The streak patterns in near-wall region with different temperature stripes are shown in the paper. Moreover, we find that there is a reduction of friction velocity with the wall temperature stripes when compared with the adiabatic case.

The origin and structure of streak-like instabilities in laminar boundary layer flames

Science.gov (United States)

Gollner, Michael; Miller, Colin; Tang, Wei; Finney, Mark

2017-11-01

Streamwise streaks are consistently observed in wildland fires, at the base of pool fires, and in other heated flows within a boundary layer. This study examines both the origin of these structures and their role in influencing some of the macroscopic properties of the flow. Streaks were reproduced and characterized via experiments on stationary heated strips and liquid and gas-fueled burners in laminar boundary layer flows, providing a framework to develop theory based on both observed and measured physical phenomena. The incoming boundary layer was established as the controlling mechanism in forming streaks, which are generated by pre-existing coherent structures, while the amplification of streaks was determined to be compatible with quadratic growth of Rayleigh-Taylor Instabilities, providing credence to the idea that the downstream growth of streaks is strongly tied to buoyancy. These local instabilities were also found to affect macroscopic properties of the flow, including heat transfer to the surface, indicating that a two-dimensional assumption may fail to adequately describe heat and mass transfer during flame spread and other reacting boundary layer flows. This work was supported by NSF (CBET-1554026) and the USDA-FS (13-CS-11221637-124).

Nondipole effects in attosecond photoelectron streaking

DEFF Research Database (Denmark)

Spiewanowski, Maciek; Madsen, Lars Bojer

2012-01-01

The influence of nondipole terms on the time delay in photoionization by an extreme-ultraviolet attosecond pulse in the presence of a near-infrared femtosecond laser pulse from 1s, 2s, and 2p states in hydrogen is investigated. In this attosecond photoelectron streaking process, the relative...

Streak camera imaging of single photons at telecom wavelength

Science.gov (United States)

Allgaier, Markus; Ansari, Vahid; Eigner, Christof; Quiring, Viktor; Ricken, Raimund; Donohue, John Matthew; Czerniuk, Thomas; Aßmann, Marc; Bayer, Manfred; Brecht, Benjamin; Silberhorn, Christine

2018-01-01

Streak cameras are powerful tools for temporal characterization of ultrafast light pulses, even at the single-photon level. However, the low signal-to-noise ratio in the infrared range prevents measurements on weak light sources in the telecom regime. We present an approach to circumvent this problem, utilizing an up-conversion process in periodically poled waveguides in Lithium Niobate. We convert single photons from a parametric down-conversion source in order to reach the point of maximum detection efficiency of commercially available streak cameras. We explore phase-matching configurations to apply the up-conversion scheme in real-world applications.

Performance of Laser Megajoule’s x-ray streak camera

Energy Technology Data Exchange (ETDEWEB)

Zuber, C., E-mail: celine.zuber@cea.fr; Bazzoli, S.; Brunel, P.; Burillo, M.; Gontier, D.; Moreau, I.; Oudot, G.; Rubbelynck, C.; Soullié, G.; Stemmler, P.; Trosseille, C. [CEA, DAM, DIF, F-91297 Arpajon (France); Fronty, J. P.; Goulmy, C. [Photonis France SAS, Avenue Roger Roncier, BP 520, 19106 Brive Cedex (France)

2016-11-15

A prototype of a picosecond x-ray streak camera has been developed and tested by Commissariat à l’Énergie Atomique et aux Énergies Alternatives to provide plasma-diagnostic support for the Laser Megajoule. We report on the measured performance of this streak camera, which almost fulfills the requirements: 50-μm spatial resolution over a 15-mm field in the photocathode plane, 17-ps temporal resolution in a 2-ns timebase, a detection threshold lower than 625 nJ/cm{sup 2} in the 0.05–15 keV spectral range, and a dynamic range greater than 100.

Streak artifacts on Kidney CT: Ionic vs nonionic contrast media

International Nuclear Information System (INIS)

Cho, Eun Ok; Kim, Won Hong; Jung, Myung Suk; Kim, Yong Hoon; Hur, Gham

1993-01-01

The authors reviewed findings of enhanced abdominal computed tomography (CT) scans to know the difference between a higher dose of conventional ionic contrast media(iothalamate meglumine) and a lower dose of a new, nonionic contrast material(ioversol). One hundred adult patients were divided into two groups. Each group consisted of 50 patients. Iothalamate meglumine and ioversol were intravenously administered in each group. The radio of the male to female in the former was 28:22, and the latter 29:21. We examine the degree of renal streak artifact and measure the Hounsfield number of urine in renal collecting system. There were significant differences of the degree of the streak artifact depending upon the osmolality of contrast media used and that was related with urine CT number(P value<0.005). We authors conclude that nonionic low osmolar contrast media is prone to cause streak artifacts and distortions of renal image than conventional ionic high osmolar contrast media

POD analysis of the instability mode of a low-speed streak in a laminar boundary layer

Science.gov (United States)

Deng, Si-Chao; Pan, Chong; Wang, Jin-Jun; Rinoshika, Akira

2017-12-01

The instability of one single low-speed streak in a zero-pressure-gradient laminar boundary layer is investigated experimentally via both hydrogen bubble visualization and planar particle image velocimetry (PIV) measurement. A single low-speed streak is generated and destabilized by the wake of an interference wire positioned normal to the wall and in the upstream. The downstream development of the streak includes secondary instability and self-reproduction process, which leads to the generation of two additional streaks appearing on either side of the primary one. A proper orthogonal decomposition (POD) analysis of PIV measured velocity field is used to identify the components of the streak instability in the POD mode space: for a sinuous/varicose type of POD mode, its basis functions present anti-symmetric/symmetric distributions about the streak centerline in the streamwise component, and the symmetry condition reverses in the spanwise component. It is further shown that sinuous mode dominates the turbulent kinematic energy (TKE) through the whole streak evolution process, the TKE content first increases along the streamwise direction to a saturation value and then decays slowly. In contrast, varicose mode exhibits a sustained growth of the TKE content, suggesting an increasing competition of varicose instability against sinuous instability.

Initial tests of the dual-sweep streak camera system planned for APS particle-beam diagnostics

International Nuclear Information System (INIS)

Lumpkin, A.; Yang, B.; Gai, W.; Cieslik, W.

1995-01-01

Initial tests of a dual-sweep streak system planned for use on the Advanced Photon Source (APS) have been performed using assets of the Argonne Wakefield Accelerator (AWA) facility. The short light pulses from the photoelectric injector drive laser in both the visible (λ=496 nm, Δt∼1.5 ps (FWHM)), and the ultraviolet (λ=248 nm, Δt∼5 ps (FWHM)) were used. Both a UV-visible S20 photocathode streak tube and a UV-to-x-ray Au photocathode streak tube were tested. Calibration data with an etalon were also obtained. A sample of dual-sweep streak data using optical synchrotron radiation on the APS injector synchrotron is also presented

The LLL compact 10-ps streak camera

International Nuclear Information System (INIS)

Thomas, S.W.; Houghton, J.W.; Tripp, G.R.; Coleman, L.W.

1975-01-01

The 10-ps streak camera has been redesigned to simplify its operation, reduce manufacturing costs, and improve its appearance. The electronics have been simplified, a film indexer added, and a contacted slit has been evaluated. Data support a 10-ps resolution. (author)

X-ray streak camera for observation of tightly pinched relativistic electron beams

International Nuclear Information System (INIS)

Johnson, D.J.

1977-01-01

A pinhole camera is coupled with a Pilot-B scintillator and image-intensified TRW streak camera to study pinched electron beam profiles via observation of anode target bremsstrahlung. Streak intensification is achieved with an EMI image intensifier operated at a gain of up to 10 6 which allows optimizing the pinhole configuration so that resolution is simultaneously limited by photon-counting statistics and pinhole geometry. The pinhole used is one-dimensional and is fabricated by inserting uranium shims with hyperbolic curved edges between two 5-cm-thick lead blocks. The loss of spatial resolution due to the x-ray transmission through the perimeter of the pinhole is calculated and a streak photograph of a Gamble I pinched beam interacting with a brass anode is presented

Deteksi dan Identifikasi Potyvirus pada Ubi Jalar di Tana Toraja, Sulawesi Selatan

Directory of Open Access Journals (Sweden)

Laras Anjarsari

2014-08-01

Full Text Available Typical viral symptoms including chlorotic and uneven interveinal yellowing on leaves without leaf malformation was observed on sweet potato field in Tana Toraja, South Sulawesi. To identify the causal of the disease, reverse transcription-polymerase chain reaction (RT-PCR and DNA sequencing were carried out to detect the virus from infected plants. RT-PCR using universal primer for C1 gene of Potyvirus was successfully amplified approximately 683bp DNA fragment. The nucleotide sequences of this C1 gene fragment showed 98% homology to Sweet potato virus G (SPVG. Amplification using specific primer for coat protein (CP gene of SPVG followed by DNA sequencing confirmed the association of SPVG from infected plants. Further nucleotide analysis shwowed that SPVG isolate from Tana Toraja had 99.2% homology to isolate from Japan. This is the firstt report of SPVG infection on sweet potato in South Sulawesi.

C.C.D. readout of a picosecond streak camera with an intensified C.C.D

International Nuclear Information System (INIS)

Lemonier, M.; Richard, J.C.; Cavailler, C.; Mens, A.; Raze, G.

1984-08-01

This paper deals with a digital streak camera readout device. The device consists in a low light level television camera made of a solid state C.C.D. array coupled to an image intensifier associated to a video-digitizer coupled to a micro-computer system. The streak camera images are picked-up as a video signal, digitized and stored. This system allows the fast recording and the automatic processing of the data provided by the streak tube

rf streak camera based ultrafast relativistic electron diffraction.

Science.gov (United States)

Musumeci, P; Moody, J T; Scoby, C M; Gutierrez, M S; Tran, T

2009-01-01

We theoretically and experimentally investigate the possibility of using a rf streak camera to time resolve in a single shot structural changes at the sub-100 fs time scale via relativistic electron diffraction. We experimentally tested this novel concept at the UCLA Pegasus rf photoinjector. Time-resolved diffraction patterns from thin Al foil are recorded. Averaging over 50 shots is required in order to get statistics sufficient to uncover a variation in time of the diffraction patterns. In the absence of an external pump laser, this is explained as due to the energy chirp on the beam out of the electron gun. With further improvements to the electron source, rf streak camera based ultrafast electron diffraction has the potential to yield truly single shot measurements of ultrafast processes.

Design of microcontroller based system for automation of streak camera

International Nuclear Information System (INIS)

Joshi, M. J.; Upadhyay, J.; Deshpande, P. P.; Sharma, M. L.; Navathe, C. P.

2010-01-01

A microcontroller based system has been developed for automation of the S-20 optical streak camera, which is used as a diagnostic tool to measure ultrafast light phenomenon. An 8 bit MCS family microcontroller is employed to generate all control signals for the streak camera. All biasing voltages required for various electrodes of the tubes are generated using dc-to-dc converters. A high voltage ramp signal is generated through a step generator unit followed by an integrator circuit and is applied to the camera's deflecting plates. The slope of the ramp can be changed by varying values of the capacitor and inductor. A programmable digital delay generator has been developed for synchronization of ramp signal with the optical signal. An independent hardwired interlock circuit has been developed for machine safety. A LABVIEW based graphical user interface has been developed which enables the user to program the settings of the camera and capture the image. The image is displayed with intensity profiles along horizontal and vertical axes. The streak camera was calibrated using nanosecond and femtosecond lasers.

Design of microcontroller based system for automation of streak camera.

Science.gov (United States)

Joshi, M J; Upadhyay, J; Deshpande, P P; Sharma, M L; Navathe, C P

2010-08-01

A microcontroller based system has been developed for automation of the S-20 optical streak camera, which is used as a diagnostic tool to measure ultrafast light phenomenon. An 8 bit MCS family microcontroller is employed to generate all control signals for the streak camera. All biasing voltages required for various electrodes of the tubes are generated using dc-to-dc converters. A high voltage ramp signal is generated through a step generator unit followed by an integrator circuit and is applied to the camera's deflecting plates. The slope of the ramp can be changed by varying values of the capacitor and inductor. A programmable digital delay generator has been developed for synchronization of ramp signal with the optical signal. An independent hardwired interlock circuit has been developed for machine safety. A LABVIEW based graphical user interface has been developed which enables the user to program the settings of the camera and capture the image. The image is displayed with intensity profiles along horizontal and vertical axes. The streak camera was calibrated using nanosecond and femtosecond lasers.

Design of microcontroller based system for automation of streak camera

Energy Technology Data Exchange (ETDEWEB)

Joshi, M. J.; Upadhyay, J.; Deshpande, P. P.; Sharma, M. L.; Navathe, C. P. [Laser Electronics Support Division, RRCAT, Indore 452013 (India)

2010-08-15

A microcontroller based system has been developed for automation of the S-20 optical streak camera, which is used as a diagnostic tool to measure ultrafast light phenomenon. An 8 bit MCS family microcontroller is employed to generate all control signals for the streak camera. All biasing voltages required for various electrodes of the tubes are generated using dc-to-dc converters. A high voltage ramp signal is generated through a step generator unit followed by an integrator circuit and is applied to the camera's deflecting plates. The slope of the ramp can be changed by varying values of the capacitor and inductor. A programmable digital delay generator has been developed for synchronization of ramp signal with the optical signal. An independent hardwired interlock circuit has been developed for machine safety. A LABVIEW based graphical user interface has been developed which enables the user to program the settings of the camera and capture the image. The image is displayed with intensity profiles along horizontal and vertical axes. The streak camera was calibrated using nanosecond and femtosecond lasers.

Absolute calibration method for fast-streaked, fiber optic light collection, spectroscopy systems

International Nuclear Information System (INIS)

Johnston, Mark D.; Frogget, Brent; Oliver, Bryan Velten; Maron, Yitzhak; Droemer, Darryl W.; Crain, Marlon D.

2010-01-01

This report outlines a convenient method to calibrate fast (<1ns resolution) streaked, fiber optic light collection, spectroscopy systems. Such a system is used to collect spectral data on plasmas generated in the A-K gap of electron beam diodes fielded on the RITS-6 accelerator (8-12MV, 140-200kA). On RITS, light is collected through a small diameter (200 micron) optical fiber and recorded on a fast streak camera at the output of 1 meter Czerny-Turner monochromator (F/7 optics). To calibrate such a system, it is necessary to efficiently couple light from a spectral lamp into a 200 micron diameter fiber, split it into its spectral components, with 10 Angstroms or less resolution, and record it on a streak camera with 1ns or less temporal resolution.

X-ray streak crystal spectography

International Nuclear Information System (INIS)

Kauffman, R.L.; Brown, T.; Medecki, H.

1983-01-01

We have built an x-ray streaked crystal spectrograph for making time-resolved x-ray spectral measurements. This instrument can access Bragg angles from 11 0 to 38 0 and x-ray spectra from 200 eV to greater than 10 keV. We have demonstrated resolving powers, E/δE > 200 at 1 keV and time resolution less than 20 psec. A description of the instrument and an example of the data is given

Microprocessor-controlled wide-range streak camera

Science.gov (United States)

Lewis, Amy E.; Hollabaugh, Craig

2006-08-01

Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera's user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized.

Microprocessor-controlled, wide-range streak camera

International Nuclear Information System (INIS)

Amy E. Lewis; Craig Hollabaugh

2006-01-01

Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera's user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized

Two-color spatial and temporal temperature measurements using a streaked soft x-ray imager

Energy Technology Data Exchange (ETDEWEB)

Moore, A. S., E-mail: alastair.moore@physics.org; Ahmed, M. F.; Soufli, R.; Pardini, T.; Hibbard, R. L.; Bailey, C. G.; Bell, P. M.; Hau-Riege, S. [Lawrence Livermore National Laboratory, P.O. Box 808, Livermore, California 94551-0808 (United States); Benstead, J.; Morton, J.; Guymer, T. M.; Garbett, W. J.; Rubery, M. S.; Skidmore, J. W. [Directorate Science and Technology, AWE Aldermaston, Reading RG7 4PR (United Kingdom); Bedzyk, M.; Shoup, M. J.; Regan, S. P.; Agliata, T.; Jungquist, R. [Laboratory for Laser Energetics, University of Rochester, Rochester, New York 14623 (United States); Schmidt, D. W. [Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States); and others

2016-11-15

A dual-channel streaked soft x-ray imager has been designed and used on high energy-density physics experiments at the National Ignition Facility. This streaked imager creates two images of the same x-ray source using two slit apertures and a single shallow angle reflection from a nickel mirror. Thin filters are used to create narrow band pass images at 510 eV and 360 eV. When measuring a Planckian spectrum, the brightness ratio of the two images can be translated into a color-temperature, provided that the spectral sensitivity of the two images is well known. To reduce uncertainty and remove spectral features in the streak camera photocathode from this photon energy range, a thin 100 nm CsI on 50 nm Al streak camera photocathode was implemented. Provided that the spectral shape is well-known, then uncertainties on the spectral sensitivity limits the accuracy of the temperature measurement to approximately 4.5% at 100 eV.

Optical Comb Generation for Streak Camera Calibration for Inertial Confinement Fusion Experiments

International Nuclear Information System (INIS)

Ronald Justin; Terence Davies; Frans Janson; Bruce Marshall; Perry Bell; Daniel Kalantar; Joseph Kimbrough; Stephen Vernon; Oliver Sweningsen

2008-01-01

The National Ignition Facility (NIF) at Lawrence Livermore National Laboratory (LLNL) is coming on-line to support physics experimentation for the U.S. Department of Energy (DOE) programs in Inertial Confinement Fusion (ICF) and Stockpile Stewardship (SS). Optical streak cameras are an integral part of the experimental diagnostics instrumentation at NIF. To accurately reduce streak camera data a highly accurate temporal calibration is required. This article describes a technique for simultaneously generating a precise +/- 2 ps optical marker pulse (fiducial reference) and trains of precisely timed, short-duration optical pulses (so-called 'comb' pulse trains) that are suitable for the timing calibrations. These optical pulse generators are used with the LLNL optical streak cameras. They are small, portable light sources that, in the comb mode, produce a series of temporally short, uniformly spaced optical pulses, using a laser diode source. Comb generators have been produced with pulse-train repetition rates up to 10 GHz at 780 nm, and somewhat lower frequencies at 664 nm. Individual pulses can be as short as 25-ps FWHM. Signal output is via a fiber-optic connector on the front panel of the generator box. The optical signal is transported from comb generator to streak camera through multi-mode, graded-index optical fiber

Streak cameras and their applications

International Nuclear Information System (INIS)

Bernet, J.M.; Imhoff, C.

1987-01-01

Over the last several years, development of various measurement techniques in the nanosecond and pico-second range has led to increased reliance on streak cameras. This paper will present the main electronic and optoelectronic performances of the Thomson-CSF TSN 506 cameras and their associated devices used to build an automatic image acquisition and processing system (NORMA). A brief survey of the diversity and the spread of the use of high speed electronic cinematography will be illustrated by a few typical applications [fr

Genetic Analysis of Streaked and Abnormal Floret Mutant st-fon

Directory of Open Access Journals (Sweden)

De-xi CHEN

2013-07-01

Full Text Available A double mutant with streaked leaf and abnormal floret was found and temporarily named streaked leaf and floral organ number mutant (st-fon. For this mutant, besides white streak appeared on culm, leaves and panicles, the number of floral organs increased and florets cracked. The extreme phenotype was that several small florets grew from one floret or branch rachis in small florets extended and developed into panicles. By using transmission electron microscope to observe the ultrastructure of white histocytes of leaves at the seedling stage, the white tissues which showed abnormal plastids, lamellas and thylakoids could not develop into normal chloroplast, and the development of chloroplast was blocked at the early growth stage of plastid. Scanning electron microscope and paraffin section were also used to observe the development of floral organs, and the results indicated that the development of floral meristem was out of order and unlimited, whereas in the twisty leaves, vascular bundle sheath cells grew excessively, or some bubbly cells increased. Genetic analyses carried out by means of cross and backcross with four normal-leaf-color materials revealed that the mutant is of cytoplasm inheritance.

Picosecond x-ray streak cameras

Science.gov (United States)

Averin, V. I.; Bryukhnevich, Gennadii I.; Kolesov, G. V.; Lebedev, Vitaly B.; Miller, V. A.; Saulevich, S. V.; Shulika, A. N.

1991-04-01

The first multistage image converter with an X-ray photocathode (UMI-93 SR) was designed in VNIIOFI in 1974 [1]. The experiments carried out in IOFAN pointed out that X-ray electron-optical cameras using the tube provided temporal resolution up to 12 picoseconds [2]. The later work has developed into the creation of the separate streak and intensifying tubes. Thus, PV-003R tube has been built on base of UMI-93SR design, fibre optically connected to PMU-2V image intensifier carrying microchannel plate.

Analyses of Twelve New Whole Genome Sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from East Africa: Diversity, Supercomputing and Evidence for Further Speciation

Science.gov (United States)

Ndunguru, Joseph; Sseruwagi, Peter; Tairo, Fred; Stomeo, Francesca; Maina, Solomon; Djinkeng, Appolinaire; Kehoe, Monica; Boykin, Laura M.

2015-01-01

Cassava brown streak disease is caused by two devastating viruses, Cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV) which are frequently found infecting cassava, one of sub-Saharan Africa’s most important staple food crops. Each year these viruses cause losses of up to $100 million USD and can leave entire families without their primary food source, for an entire year. Twelve new whole genomes, including seven of CBSV and five of UCBSV were uncovered in this research, doubling the genomic sequences available in the public domain for these viruses. These new sequences disprove the assumption that the viruses are limited by agro-ecological zones, show that current diagnostic primers are insufficient to provide confident diagnosis of these viruses and give rise to the possibility that there may be as many as four distinct species of virus. Utilizing NGS sequencing technologies and proper phylogenetic practices will rapidly increase the solution to sustainable cassava production. PMID:26439260

Analyses of Twelve New Whole Genome Sequences of Cassava Brown Streak Viruses and Ugandan Cassava Brown Streak Viruses from East Africa: Diversity, Supercomputing and Evidence for Further Speciation.

Directory of Open Access Journals (Sweden)

Joseph Ndunguru

Full Text Available Cassava brown streak disease is caused by two devastating viruses, Cassava brown streak virus (CBSV and Ugandan cassava brown streak virus (UCBSV which are frequently found infecting cassava, one of sub-Saharan Africa's most important staple food crops. Each year these viruses cause losses of up to $100 million USD and can leave entire families without their primary food source, for an entire year. Twelve new whole genomes, including seven of CBSV and five of UCBSV were uncovered in this research, doubling the genomic sequences available in the public domain for these viruses. These new sequences disprove the assumption that the viruses are limited by agro-ecological zones, show that current diagnostic primers are insufficient to provide confident diagnosis of these viruses and give rise to the possibility that there may be as many as four distinct species of virus. Utilizing NGS sequencing technologies and proper phylogenetic practices will rapidly increase the solution to sustainable cassava production.

Avoiding acidic region streaking in two-dimensional gel ...

Indian Academy of Sciences (India)

Supplementary figure 6. 2DE gel images ... Number of acidic streaks. Fedyunin et al. 2012. 4.02. 6. Zuo et al. 2000. 2.54. 9. Valenete et ... CE, 3rd 2009 Proteasomal protein degradation in ... Nandakumar MP, Shen J, Raman B and Marten MR.

Atomic and molecular phases through attosecond streaking

DEFF Research Database (Denmark)

Baggesen, Jan Conrad; Madsen, Lars Bojer

2011-01-01

phase of the atomic or molecular ionization matrix elements from the two states through the interference from the two channels. The interference may change the phase of the photoelectron streaking signal within the envelope of the infrared field, an effect to be accounted for when reconstructing short...... pulses from the photoelectron signal and in attosecond time-resolved measurements....

Microprocessor-controlled, wide-range streak camera

Energy Technology Data Exchange (ETDEWEB)

Amy E. Lewis, Craig Hollabaugh

2006-09-01

Bechtel Nevada/NSTec recently announced deployment of their fifth generation streak camera. This camera incorporates many advanced features beyond those currently available for streak cameras. The arc-resistant driver includes a trigger lockout mechanism, actively monitors input trigger levels, and incorporates a high-voltage fault interrupter for user safety and tube protection. The camera is completely modular and may deflect over a variable full-sweep time of 15 nanoseconds to 500 microseconds. The camera design is compatible with both large- and small-format commercial tubes from several vendors. The embedded microprocessor offers Ethernet connectivity, and XML [extensible markup language]-based configuration management with non-volatile parameter storage using flash-based storage media. The camera’s user interface is platform-independent (Microsoft Windows, Unix, Linux, Macintosh OSX) and is accessible using an AJAX [asynchronous Javascript and XML]-equipped modem browser, such as Internet Explorer 6, Firefox, or Safari. User interface operation requires no installation of client software or browser plug-in technology. Automation software can also access the camera configuration and control using HTTP [hypertext transfer protocol]. The software architecture supports multiple-simultaneous clients, multiple cameras, and multiple module access with a standard browser. The entire user interface can be customized.

Numerical Investigation on the Influence of Hot Streak Temperature Ratio in a High-Pressure Stage of Vaneless Counter-Rotating Turbine

Directory of Open Access Journals (Sweden)

Zhao Qingjun

2007-01-01

Full Text Available The results of recent studies have shown that combustor exit temperature distortion can cause excessive heat load of high-pressure turbine (HPT rotor blades. The heating of HPT rotor blades can lead to thermal fatigue and degrade turbine performance. In order to explore the influence of hot streak temperature ratio on the temperature distributions of HPT airfoil surface, three-dimensional multiblade row unsteady Navier-Stokes simulations have been performed in a vaneless counter-rotating turbine (VCRT. The hot streak temperature ratios from 1.0 (without hot streak to 2.4 were used in these numerical simulations, including 1.0, 1.2, 1.6, 2.0, and 2.4 temperature ratios. The hot streak is circular in shape with a diameter equal to 25% of the span. The center of the hot streak is located at 50% of span and 0% of pitch (the leading edge of the HPT stator vane. The predicted results show that the hot streak is relatively unaffected as it migrates through the HPT stator. The hot streak mixes with the vane wake and convects towards the pressure surface (PS of the HPT rotor when it moves over the vane surface of the HPT stator. The heat load of the HPT rotor increases with the increase of the hot streak temperature ratio. The existence of the inlet temperature distortion induces a thin layer of cooler air in the HPT rotor, which separates the PS of the HPT rotor from the hotter fluid. The numerical results also indicating the migration characteristics of the hot streak in the HPT rotor are predominated by the combined effects of secondary flow and buoyancy. The combined effects that induce the high-temperature fluid migrate towards the hub on the HPT rotor. The effect of the secondary flow on the hotter fluid increases as the hot streak temperature ratio is increased. The influence of buoyancy is directly proportional to the hot streak temperature ratio. The predicted results show that the increase of the hot streak temperature ratio trends to increase

A novel simultaneous streak and framing camera without principle errors

Science.gov (United States)

Jingzhen, L.; Fengshan, S.; Ningwen, L.; Xiangdong, G.; Bin, H.; Qingyang, W.; Hongyi, C.; Yi, C.; Xiaowei, L.

2018-02-01

A novel simultaneous streak and framing camera with continuous access, the perfect information of which is far more important for the exact interpretation and precise evaluation of many detonation events and shockwave phenomena, has been developed. The camera with the maximum imaging frequency of 2 × 106 fps and the maximum scanning velocity of 16.3 mm/μs has fine imaging properties which are the eigen resolution of over 40 lp/mm in the temporal direction and over 60 lp/mm in the spatial direction and the framing frequency principle error of zero for framing record, and the maximum time resolving power of 8 ns and the scanning velocity nonuniformity of 0.136%~-0.277% for streak record. The test data have verified the performance of the camera quantitatively. This camera, simultaneously gained frames and streak with parallax-free and identical time base, is characterized by the plane optical system at oblique incidence different from space system, the innovative camera obscura without principle errors, and the high velocity motor driven beryllium-like rotating mirror, made of high strength aluminum alloy with cellular lateral structure. Experiments demonstrate that the camera is very useful and reliable to take high quality pictures of the detonation events.

A Demographic Model to Evaluate Population Declines in the Endangered Streaked Horned Lark

Directory of Open Access Journals (Sweden)

Alaine F. Camfield

2011-12-01

Full Text Available The Streaked Horned Lark (Eremophila alpestris strigata is listed as endangered by the State of Washington, USA and by Canada under the Species at Risk Act and is also classified as a federal candidate for listing under the Endangered Species Act in the USA. A substantial portion of Streaked Horned Lark habitat has been lost or degraded, and range contraction has occurred in Oregon, Washington, and British Columbia. We estimate the vital rates (fecundity, adult and juvenile survival and population growth rate (λ for Streaked Horned Larks breeding in Washington, USA and conduct a Life-Stage Simulation Analysis (LSA to evaluate which vital rate has the greatest influence on λ. We simulated changes in the three vital rates to examine how much they would need to be adjusted either independently or in concert to achieve a stable Streaked Horned Lark population (λ = 1. We also evaluated which fecundity component (the number of fledglings per egg laid or renesting interval had the greatest impact on λ. The estimate of population growth suggests that Streaked Horned Larks in Washington are declining rapidly (λ = 0.62 ± 0.10 and that local breeding sites are not sustainable without immigration. The LSA results indicate that adult survival had the greatest influence on λ, followed by juvenile survival and fecundity. However, increases in vital rates led to λ = 1 only when adult survival was raised from 0.47 to 0.85, juvenile survival from 0.17 to 0.58, and fecundity from 0.91 to 3.09. Increases in breeding success and decreases in the renesting interval influenced λ similarly; however, λ did not reach 1 even when breeding success was raised to 100% or renesting intervals were reduced to 1 day. Only when all three vital rates were increased simultaneously did λ approach 1 without requiring highly unrealistic increases in each vital rate. We conclude that conservation activities need to target all or multiple vital rates to be successful. The

Identication of potivirus present in lulo (solanum quitoense lam

Directory of Open Access Journals (Sweden)

J. Vaca

1999-07-01

Full Text Available The Solanaceous fruit Solanum quitoense Lam, is originally from Andean región of South America. This fruit has commercial prospective. The Leaf Yellowing Disease in Lulo (Solanum quitoense Lam was first described by Zuluaga in 1991. It causes economically losses and has been associated with a virus attack. The disease's symptoms included stunting, yellow streaking or mosaic patterns in leaves, often with a curling of the leaf margins. In order to diagnostic the presence of virus, we applied two different strategies. The first one consisted of a modified technique of RNA double strand isolation (Morris and Dodds, 1979. The second one consisted on applying RT-PCR system using specific "primers" designed to amplify cDNA fragments spaning the 3'-terminal part of the Nlb cistron and the 5'-terminal part of the potyvirus CP cistron (Langeveld et al 1991. By applying the modified method of Morris and Dodds, it was possible to observe characteristic bands of double strand RNA. Amplification with "primers" POT1 and POT2 yielded a fragment of about 1 Kpb, whose length was in agreement with the known sequences of potyvirus. Here we report by the first time a potyvirus presence in Lulo plants affected with leaf yellowing disease, identified by dsRNA analysis and RT-PCR procedure.

A new streaked soft x-ray imager for the National Ignition Facility

Energy Technology Data Exchange (ETDEWEB)

Benstead, J., E-mail: james.benstead@awe.co.uk; Morton, J.; Guymer, T. M.; Garbett, W. J.; Rubery, M. S.; Skidmore, J. W. [AWE, Aldermaston, Reading, Berkshire RG7 4PR (United Kingdom); Moore, A. S.; Ahmed, M. F.; Soufli, R.; Pardini, T.; Hibbard, R. L.; Bailey, C. G.; Bell, P. M.; Hau-Riege, S. [Lawrence Livermore National Laboratory, Livermore, California 94550 (United States); Bedzyk, M.; Shoup, M. J.; Reagan, S.; Agliata, T.; Jungquist, R. [Laboratory for Laser Energetics, University of Rochester, Rochester, New York 14623 (United States); Schmidt, D. W. [Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States); and others

2016-05-15

A new streaked soft x-ray imager has been designed for use on high energy-density (HED) physics experiments at the National Ignition Facility based at the Lawrence Livermore National Laboratory. This streaked imager uses a slit aperture, single shallow angle reflection from a nickel mirror, and soft x-ray filtering to, when coupled to one of the NIF’s x-ray streak cameras, record a 4× magnification, one-dimensional image of an x-ray source with a spatial resolution of less than 90 μm. The energy band pass produced depends upon the filter material used; for the first qualification shots, vanadium and silver-on-titanium filters were used to gate on photon energy ranges of approximately 300–510 eV and 200–400 eV, respectively. A two-channel version of the snout is available for x-ray sources up to 1 mm and a single-channel is available for larger sources up to 3 mm. Both the one and two-channel variants have been qualified on quartz wire and HED physics target shots.

Relationships between early spring wheat streak mosaic severity levels and grain yield: Implications for management decisions

Science.gov (United States)

Wheat streak mosaic (WSM) caused by Wheat streak mosaic virus, which is transmitted by the wheat curl mite (Aceria tosichella), is a major yield-limiting disease in the Texas High Plains. In addition to its impact on grain production, the disease reduces water-use efficiency by affecting root develo...

Molecular characterization of Banana streak virus isolate from Musa Acuminata in China.

Science.gov (United States)

Zhuang, Jun; Wang, Jian-Hua; Zhang, Xin; Liu, Zhi-Xin

2011-12-01

Banana streak virus (BSV), a member of genus Badnavirus, is a causal agent of banana streak disease throughout the world. The genetic diversity of BSVs from different regions of banana plantations has previously been investigated, but there are relatively few reports of the genetic characteristic of episomal (non-integrated) BSV genomes isolated from China. Here, the complete genome, a total of 7722bp (GenBank accession number DQ092436), of an isolate of Banana streak virus (BSV) on cultivar Cavendish (BSAcYNV) in Yunnan, China was determined. The genome organises in the typical manner of badnaviruses. The intergenic region of genomic DNA contains a large stem-loop, which may contribute to the ribosome shift into the following open reading frames (ORFs). The coding region of BSAcYNV consists of three overlapping ORFs, ORF1 with a non-AUG start codon and ORF2 encoding two small proteins are individually involved in viral movement and ORF3 encodes a polyprotein. Besides the complete genome, a defective genome lacking the whole RNA leader region and a majority of ORF1 and which encompasses 6525bp was also isolated and sequenced from this BSV DNA reservoir in infected banana plants. Sequence analyses showed that BSAcYNV has closest similarity in terms of genome organization and the coding assignments with an BSV isolate from Vietnam (BSAcVNV). The corresponding coding regions shared identities of 88% and -95% at nucleotide and amino acid levels, respectively. Phylogenetic analysis also indicated BSAcYNV shared the closest geographical evolutionary relationship to BSAcVNV among sequenced banana streak badnaviruses.

Cassava brown streak disease in Rwanda, the associated viruses and disease phenotypes.

Science.gov (United States)

Munganyinka, E; Ateka, E M; Kihurani, A W; Kanyange, M C; Tairo, F; Sseruwagi, P; Ndunguru, J

2018-02-01

Cassava brown streak disease (CBSD) was first observed on cassava ( Manihot esculenta ) in Rwanda in 2009. In 2014 eight major cassava-growing districts in the country were surveyed to determine the distribution and variability of symptom phenotypes associated with CBSD, and the genetic diversity of cassava brown streak viruses. Distribution of the CBSD symptom phenotypes and their combinations varied greatly between districts, cultivars and their associated viruses. The symptoms on leaf alone recorded the highest (32.2%) incidence, followed by roots (25.7%), leaf + stem (20.3%), leaf + root (10.4%), leaf + stem + root (5.2%), stem + root (3.7%), and stem (2.5%) symptoms. Analysis by RT-PCR showed that single infections of Ugandan cassava brown streak virus (UCBSV) were most common (74.2% of total infections) and associated with all the seven phenotypes studied. Single infections of Cassava brown streak virus (CBSV) were predominant (15.3% of total infections) in CBSD-affected plants showing symptoms on stems alone. Mixed infections (CBSV + UCBSV) comprised 10.5% of total infections and predominated in the combinations of leaf + stem + root phenotypes. Phylogenetic analysis and the estimates of evolutionary divergence, using partial sequences (210 nt) of the coat protein gene, revealed that in Rwanda there is one type of CBSV and an indication of diverse UCBSV. This study is the first to report the occurrence and distribution of both CBSV and UCBSV based on molecular techniques in Rwanda.

Fine Mapping of the Dominant Potyvirus Resistance Gene Pvr7 Reveals a Relationship with Pvr4 in Capsicum annuum.

Science.gov (United States)

Venkatesh, Jelli; An, Jeongtak; Kang, Won-Hee; Jahn, Molly; Kang, Byoung-Cheorl

2018-01-01

Pepper mottle virus (PepMoV) is the most common potyvirus infection of pepper plants and causes significant yield losses. The Pvr7 gene from Capsicum chinense PI159236 and the Pvr4 gene from C. annuum CM334 both have been reported to confer dominant resistance to PepMoV. The Pvr7 locus conferring resistance to PepMoV in C. annuum '9093' was previously mapped to chromosome 10. To develop a high-resolution map of the Pvr7 locus in 9093, we constructed an intraspecific F 2 mapping population consisting of 916 individuals by crossing PepMoV-resistant C. annuum '9093' and the PepMoV-susceptible C. annuum 'Jeju'. To delimit the Pvr7 target region, single-nucleotide polymorphism (SNP) markers derived from the Pvr4 region were used for genotyping the F 2 population. Molecular mapping delimited the Pvr7 locus to a physical interval of 258 kb, which was the same region as Pvr4 on chromosome 10. Three SNP markers derived from Pvr4 mapping perfectly cosegregated with PepMoV resistance. Sequencing analyses of the Pvr7 flanking markers and the Pvr4-specific gene indicated that Pvr7 and Pvr4 are the same gene. Resistance spectrum analysis of 9093 against pepper potyviruses showed that 9093 has a resistance spectrum similar to that of cultivar CM334. These combined results demonstrate that, unlike previously thought, the dominant PepMoV resistance in 9093 could be derived from C. annuum 'CM334', and that Pvr4 and Pvr7 should be considered as the same locus.

Picosecond Streaked K-Shell Spectroscopy of Near Solid-Density Aluminum Plasmas

Science.gov (United States)

Stillman, C. R.; Nilson, P. M.; Ivancic, S. T.; Mileham, C.; Froula, D. H.; Golovkin, I. E.

2016-10-01

The thermal x-ray emission from rapidly heated solid targets containing a buried-aluminum layer was measured. The targets were driven by high-contrast 1 ω or 2 ω laser pulses at focused intensities up to 1 ×1019W/Wcm2 cm2 . A streaked x-ray spectrometer recorded the Al Heα and lithium-like satellite lines with 2-ps temporal resolution and moderate resolving power (E/E ΔE 700). Time-integrated measurements over the same spectral range were used to correct the streaked data for variations in photocathode sensitivity. Line widths and intensity ratios from the streaked data were interpreted using a collisional radiative atomic model to provide the average plasma conditions in the buried layer as a function of time. It was observed that the resonance line tends toward lower photon energies at high electron densities. The measured shifts will be compared to predicted shifts from Stark-operator calculations at the inferred plasma conditions. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944, the office of Fusion Energy Sciences Award Number DE-SC0012317, and the Stewardship Science Graduate Fellowship Grant Number DE-NA0002135.

A maize resistance gene functions against bacterial streak disease in rice.

Science.gov (United States)

Zhao, Bingyu; Lin, Xinghua; Poland, Jesse; Trick, Harold; Leach, Jan; Hulbert, Scot

2005-10-25

Although cereal crops all belong to the grass family (Poacea), most of their diseases are specific to a particular species. Thus, a given cereal species is typically resistant to diseases of other grasses, and this nonhost resistance is generally stable. To determine the feasibility of transferring nonhost resistance genes (R genes) between distantly related grasses to control specific diseases, we identified a maize R gene that recognizes a rice pathogen, Xanthomonas oryzae pv. oryzicola, which causes bacterial streak disease. Bacterial streak is an important disease of rice in Asia, and no simply inherited sources of resistance have been identified in rice. Although X. o. pv. oryzicola does not cause disease on maize, we identified a maize gene, Rxo1, that conditions a resistance reaction to a diverse collection of pathogen strains. Surprisingly, Rxo1 also controls resistance to the unrelated pathogen Burkholderia andropogonis, which causes bacterial stripe of sorghum and maize. The same gene thus controls resistance reactions to both pathogens and nonpathogens of maize. Rxo1 has a nucleotide-binding site-leucine-rich repeat structure, similar to many previously identified R genes. Most importantly, Rxo1 functions after transfer as a transgene to rice, demonstrating the feasibility of nonhost R gene transfer between cereals and providing a valuable tool for controlling bacterial streak disease.

traits and resistance to maize streak virus disease in kenya

African Journals Online (AJOL)

African Crop Science Journal, Vol. 14. No. 4, pp. ... Kenya Agricultural Research Institute, Muguga-South, P.O. Box 30148, Nairobi, Kenya .... streak disease has been identified in various maize recycling and development of pure-lines at.

Light field driven streak-camera for single-shot measurements of the temporal profile of XUV-pulses from a free-electron laser; Lichtfeld getriebene Streak-Kamera zur Einzelschuss Zeitstrukturmessung der XUV-Pulse eines Freie-Elektronen Lasers

Energy Technology Data Exchange (ETDEWEB)

Fruehling, Ulrike

2009-10-15

The Free Electron Laser in Hamburg (FLASH) is a source for highly intense ultra short extreme ultraviolet (XUV) light pulses with pulse durations of a few femtoseconds. Due to the stochastic nature of the light generation scheme based on self amplified spontaneous emission (SASE), the duration and temporal profile of the XUV pulses fluctuate from shot to shot. In this thesis, a THz-field driven streak-camera capable of single pulse measurements of the XUV pulse-profile has been realized. In a first XUV-THz pump-probe experiment at FLASH, the XUV-pulses are overlapped in a gas target with synchronized THz-pulses generated by a new THz-undulator. The electromagnetic field of the THz light accelerates photoelectrons produced by the XUV-pulses with the resulting change of the photoelectron momenta depending on the phase of the THz field at the time of ionisation. This technique is intensively used in attosecond metrology where near infrared streaking fields are employed for the temporal characterisation of attosecond XUV-Pulses. Here, it is adapted for the analysis of pulse durations in the few femtosecond range by choosing a hundred times longer far infrared streaking wavelengths. Thus, the gap between conventional streak cameras with typical resolutions of hundreds of femtoseconds and techniques with attosecond resolution is filled. Using the THz-streak camera, the time dependent electric field of the THz-pulses was sampled in great detail while on the other hand the duration and even details of the time structure of the XUV-pulses were characterized. (orig.)

ANTIOXIDANT EFFECTS OF L-SERINE AGAINST FATTY STREAK FORMATION IN HYPERCHOLESTEROLEMIC ANIMALS

Directory of Open Access Journals (Sweden)

Ahmad Movahedian

2010-12-01

Full Text Available   Abstract INTRODUCTION: Peroxidation of blood lipoproteins is regarded as a key event in the development of atherosclerosis. Evidence suggests that oxidative modification of amino acids in low-density lipoprotein (LDL particles leads to its convert into an atherogenic form, which is taken up by macrophages. Therefore the reduction of oxidative modification of lipoproteins by increasing plasma antioxidant capacity may prevent cardiovascular disease. methods: In this study, the antioxidant and anti-fatty streak effects of L-serine were investigated in hypercholesterolemic rabbits. Rabbits were randomly divided into three groups which were fed high-cholesterol diet (hypercholesterolemic control group, high-cholesterol + L-serine diet (treatment group, and normal diet (control for twelve weeks and then blood samples were obtained to measure plasma cholesterol, triglyceride (TG, high-density lipoprotein (HDL, low-density lipoprotein (LDL, antioxidant capacity (AC, malondialdehyde (MDA, and conjugated dienes (CDS. Right and left coronary arteries were also obtained for histological evaluation. results: No significant difference was observed in plasma cholesterol, TG, HDL, LDL and CDS levels between treatment and hypercholesterolemic control groups (P>0.05. The levels of plasma MDA and AC were 0.29‌ µM and 56%, respectively in the treatment group which showed a significant change in comparison with hypercholesterolemic control groups (P<0.05. The mean size of produced fatty streak also showed significant reduction in the treatment group compared to the hypercholesterolemic group (P<0.05. CONCLUSIONS: The results showed that L-serine has antioxidant and anti-fatty streak effects without any influence on plasma lipid levels in hypercholesterolemic rabbits.     Keywords: Atherosclerosis, cholesterol, L-serine, antioxidant, lipids, fatty streak.

Cassava brown streak disease effects on leaf metabolites and ...

African Journals Online (AJOL)

Cassava brown streak disease effects on leaf metabolites and pigment accumulation. ... Total reducing sugar and starch content also dropped significantly (-30 and -60%, respectively), much as NASE 14 maintained a relatively higher amount of carbohydrates. Leaf protein levels were significantly reduced at a rate of 0.07 ...

Pedicle streaking: A novel and simple aid in pedicle positioning in free tissue transfer

Directory of Open Access Journals (Sweden)

Aditya Aggarwal

2015-01-01

Full Text Available Introduction: The pedicle positioning in free tissue transfer is critical to its success. Long thin pedicles are especially prone to this complication where even a slight twist in the perforator can result in flap loss. Pedicles passing through the long tunnels are similarly at risk. Streaking the pedicle with methylene blue is a simple and safe method which increases the safety of free tissue transfer. Materials and Methods: Once the flap is islanded on the pedicle and the vascularity of the flap is confirmed, the pedicle is streaked with methylene blue dye at a distance of 6-7 mm. The streaking starts from the origin of the vessels and continued distally on to the under surface of flap to mark the complete course of the pedicle in alignment. The presence of streaking in some parts and not in rest indicates twist in the pedicle. Observation and Results: Four hundred and sixty five free flaps have been done at our centre in the last 5 years. The overall success rate of free flaps is 95.3% (22 free flap failures. There has not been a single case of pedicle twist leading to flap congestion and failure. Conclusion: This simple and novel method is very reliable for pedicle positioning avoiding any twist necessary for successful free tissue transfer.

Improving the off-axis spatial resolution and dynamic range of the NIF X-ray streak cameras (invited)

Energy Technology Data Exchange (ETDEWEB)

MacPhee, A. G., E-mail: macphee2@llnl.gov; Hatch, B. W.; Bell, P. M.; Bradley, D. K.; Datte, P. S.; Landen, O. L.; Palmer, N. E.; Piston, K. W.; Rekow, V. V. [Lawrence Livermore National Laboratory, P.O. Box 808, Livermore, California 94551-0808 (United States); Dymoke-Bradshaw, A. K. L.; Hares, J. D. [Kentech Instruments Ltd., Isis Building, Howbery Park, Wallingford, Oxfordshire OX10 8BD (United Kingdom); Hassett, J. [Lawrence Livermore National Laboratory, P.O. Box 808, Livermore, California 94551-0808 (United States); Department of Electrical and Computer Engineering, University of Rochester, Rochester, New York 14627 (United States); Meadowcroft, A. L. [AWE Aldermaston, Reading, Berkshire RG7 4PR (United Kingdom); Hilsabeck, T. J.; Kilkenny, J. D. [General Atomics, P.O. Box 85608, San Diego, California 92186-5608 (United States)

2016-11-15

We report simulations and experiments that demonstrate an increase in spatial resolution of the NIF core diagnostic x-ray streak cameras by at least a factor of two, especially off axis. A design was achieved by using a corrector electron optic to flatten the field curvature at the detector plane and corroborated by measurement. In addition, particle in cell simulations were performed to identify the regions in the streak camera that contribute the most to space charge blurring. These simulations provide a tool for convolving synthetic pre-shot spectra with the instrument function so signal levels can be set to maximize dynamic range for the relevant part of the streak record.

Improving the off-axis spatial resolution and dynamic range of the NIF X-ray streak cameras (invited).

Science.gov (United States)

MacPhee, A G; Dymoke-Bradshaw, A K L; Hares, J D; Hassett, J; Hatch, B W; Meadowcroft, A L; Bell, P M; Bradley, D K; Datte, P S; Landen, O L; Palmer, N E; Piston, K W; Rekow, V V; Hilsabeck, T J; Kilkenny, J D

2016-11-01

We report simulations and experiments that demonstrate an increase in spatial resolution of the NIF core diagnostic x-ray streak cameras by at least a factor of two, especially off axis. A design was achieved by using a corrector electron optic to flatten the field curvature at the detector plane and corroborated by measurement. In addition, particle in cell simulations were performed to identify the regions in the streak camera that contribute the most to space charge blurring. These simulations provide a tool for convolving synthetic pre-shot spectra with the instrument function so signal levels can be set to maximize dynamic range for the relevant part of the streak record.

A potyvirus vector efficiently targets recombinant proteins to chloroplasts, mitochondria and nuclei in plant cells when expressed at the amino terminus of the polyprotein.

Science.gov (United States)

Majer, Eszter; Navarro, José-Antonio; Daròs, José-Antonio

2015-09-01

Plant virus-based expression systems allow quick and efficient production of recombinant proteins in plant biofactories. Among them, a system derived from tobacco etch virus (TEV; genus potyvirus) permits coexpression of equimolar amounts of several recombinant proteins. This work analyzed how to target recombinant proteins to different subcellular localizations in the plant cell using this system. We constructed TEV clones in which green fluorescent protein (GFP), with a chloroplast transit peptide (cTP), a nuclear localization signal (NLS) or a mitochondrial targeting peptide (mTP) was expressed either as the most amino-terminal product or embedded in the viral polyprotein. Results showed that cTP and mTP mediated efficient translocation of GFP to the corresponding organelle only when present at the amino terminus of the viral polyprotein. In contrast, the NLS worked efficiently at both positions. Viruses expressing GFP in the amino terminus of the viral polyprotein produced milder symptoms. Untagged GFPs and cTP and NLS tagged amino-terminal GFPs accumulated to higher amounts in infected tissues. Finally, viral progeny from clones with internal GFPs maintained the extra gene better. These observations will help in the design of potyvirus-based vectors able to coexpress several proteins while targeting different subcellular localizations, as required in plant metabolic engineering. Copyright © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Development of a Data Reduction Algorithm for Optical Wide Field Patrol (OWL) II: Improving Measurement of Lengths of Detected Streaks

Science.gov (United States)

Park, Sun-Youp; Choi, Jin; Roh, Dong-Goo; Park, Maru; Jo, Jung Hyun; Yim, Hong-Suh; Park, Young-Sik; Bae, Young-Ho; Park, Jang-Hyun; Moon, Hong-Kyu; Choi, Young-Jun; Cho, Sungki; Choi, Eun-Jung

2016-09-01

As described in the previous paper (Park et al. 2013), the detector subsystem of optical wide-field patrol (OWL) provides many observational data points of a single artificial satellite or space debris in the form of small streaks, using a chopper system and a time tagger. The position and the corresponding time data are matched assuming that the length of a streak on the CCD frame is proportional to the time duration of the exposure during which the chopper blades do not obscure the CCD window. In the previous study, however, the length was measured using the diagonal of the rectangle of the image area containing the streak; the results were quite ambiguous and inaccurate, allowing possible matching error of positions and time data. Furthermore, because only one (position, time) data point is created from one streak, the efficiency of the observation decreases. To define the length of a streak correctly, it is important to locate the endpoints of a streak. In this paper, a method using a differential convolution mask pattern is tested. This method can be used to obtain the positions where the pixel values are changed sharply. These endpoints can be regarded as directly detected positional data, and the number of data points is doubled by this result.

Quantitative trait loci for resistance to maize streak virus disease in ...

African Journals Online (AJOL)

STORAGESEVER

2008-07-18

Jul 18, 2008 ... African Journal of Biotechnology Vol. ... development ... Biotechnology Center, Kenya Agricultural Research Institute, P.O. Box 58711-00200, Nairobi, ... Maize streak virus disease is an important disease of maize in Kenya.

Compact streak camera for the shock study of solids by using the high-pressure gas gun

Science.gov (United States)

Nagayama, Kunihito; Mori, Yasuhito

1993-01-01

For the precise observation of high-speed impact phenomena, a compact high-speed streak camera recording system has been developed. The system consists of a high-pressure gas gun, a streak camera, and a long-pulse dye laser. The gas gun installed in our laboratory has a muzzle of 40 mm in diameter, and a launch tube of 2 m long. Projectile velocity is measured by the laser beam cut method. The gun is capable of accelerating a 27 g projectile up to 500 m/s, if helium gas is used as a driver. The system has been designed on the principal idea that the precise optical measurement methods developed in other areas of research can be applied to the gun study. The streak camera is 300 mm in diameter, with a rectangular rotating mirror which is driven by an air turbine spindle. The attainable streak velocity is 3 mm/microsecond(s) . The size of the camera is rather small aiming at the portability and economy. Therefore, the streak velocity is relatively slower than the fast cameras, but it is possible to use low-sensitivity but high-resolution film as a recording medium. We have also constructed a pulsed dye laser of 25 - 30 microsecond(s) in duration. The laser can be used as a light source of observation. The advantage for the use of the laser will be multi-fold, i.e., good directivity, almost single frequency, and so on. The feasibility of the system has been demonstrated by performing several experiments.

Streaked, x-ray-transmission-grating spectrometer

International Nuclear Information System (INIS)

Ceglio, N.M.; Roth, M.; Hawryluk, A.M.

1981-08-01

A free standing x-ray transmission grating has been coupled with a soft x-ray streak camera to produce a time resolved x-ray spectrometer. The instrument has a temporal resolution of approx. 20 psec, is capable of covering a broad spectral range, 2 to 120 A, has high sensitivity, and is simple to use requiring no complex alignment procedure. In recent laser fusion experiments the spectrometer successfully recorded time resolved spectra over the range 10 to 120 A with a spectral resolving power, lambda/Δlambda of 4 to 50, limited primarily by source size and collimation effects

Automated computer analysis of plasma-streak traces from SCYLLAC

International Nuclear Information System (INIS)

Whitman, R.L.; Jahoda, F.C.; Kruger, R.P.

1977-01-01

An automated computer analysis technique that locates and references the approximate centroid of single- or dual-streak traces from the Los Alamos Scientific Laboratory SCYLLAC facility is described. The technique also determines the plasma-trace width over a limited self-adjusting region. The plasma traces are recorded with streak cameras on Polaroid film, then scanned and digitized for processing. The analysis technique uses scene segmentation to separate the plasma trace from a reference fiducial trace. The technique employs two methods of peak detection; one for the plasma trace and one for the fiducial trace. The width is obtained using an edge-detection, or slope, method. Timing data are derived from the intensity modulation of the fiducial trace. To smooth (despike) the output graphs showing the plasma-trace centroid and width, a technique of ''twicing'' developed by Tukey was employed. In addition, an interactive sorting algorithm allows retrieval of the centroid, width, and fiducial data from any test shot plasma for post analysis. As yet, only a limited set of sixteen plasma traces has been processed using this technique

Automated computer analysis of plasma-streak traces from SCYLLAC

International Nuclear Information System (INIS)

Whiteman, R.L.; Jahoda, F.C.; Kruger, R.P.

1977-11-01

An automated computer analysis technique that locates and references the approximate centroid of single- or dual-streak traces from the Los Alamos Scientific Laboratory SCYLLAC facility is described. The technique also determines the plasma-trace width over a limited self-adjusting region. The plasma traces are recorded with streak cameras on Polaroid film, then scanned and digitized for processing. The analysis technique uses scene segmentation to separate the plasma trace from a reference fiducial trace. The technique employs two methods of peak detection; one for the plasma trace and one for the fiducial trace. The width is obtained using an edge-detection, or slope, method. Timing data are derived from the intensity modulation of the fiducial trace. To smooth (despike) the output graphs showing the plasma-trace centroid and width, a technique of ''twicing'' developed by Tukey was employed. In addition, an interactive sorting algorithm allows retrieval of the centroid, width, and fiducial data from any test shot plasma for post analysis. As yet, only a limited set of the plasma traces has been processed with this technique

Persistence of Smectic-A Oily Streaks into the Nematic Phase by UV Irradiation of Reactive Mesogens

Directory of Open Access Journals (Sweden)

Ines Gharbi

2017-12-01

Full Text Available Thin smectic liquid crystal films with competing boundary conditions (planar and homeotropic at opposing surfaces form well-known striated structures known as “oily streaks”, which are a series of hemicylindrical caps that run perpendicular to the easy axis of the planar substrate. The streaks vanish on heating into the nematic phase, where the film becomes uniform and exhibits hybrid alignment. On adding sufficient reactive mesogen and polymerizing, the oily streak texture is maintained on heating through the entire nematic phase until reaching the bulk isotropic phase, above which the texture vanishes. Depending on the liquid crystal thickness, the oily streak structure may be retrieved after cooling, which demonstrates the strong impact of the polymer backbone on the liquid crystal texture. Polarizing optical, atomic force, and scanning electron microscopy data are presented.

Identification of immunogenic hot spots within plum pox potyvirus capsid protein for efficient antigen presentation.

Science.gov (United States)

Fernández-Fernández, M Rosario; Martínez-Torrecuadrada, Jorge L; Roncal, Fernando; Domínguez, Elvira; García, Juan Antonio

2002-12-01

PEPSCAN analysis has been used to characterize the immunogenic regions of the capsid protein (CP) in virions of plum pox potyvirus (PPV). In addition to the well-known highly immunogenic N- and C-terminal domains of CP, regions within the core domain of the protein have also shown high immunogenicity. Moreover, the N terminus of CP is not homogeneously immunogenic, alternatively showing regions frequently recognized by antibodies and others that are not recognized at all. These results have helped us to design efficient antigen presentation vectors based on PPV. As predicted by PEPSCAN analysis, a small displacement of the insertion site in a previously constructed vector, PPV-gamma, turned the derived chimeras into efficient immunogens. Vectors expressing foreign peptides at different positions within a highly immunogenic region (amino acids 43 to 52) in the N-terminal domain of CP were the most effective at inducing specific antibody responses against the foreign sequence.

Precise measurement of a subpicosecond electron single bunch by the femtosecond streak camera

International Nuclear Information System (INIS)

Uesaka, M.; Ueda, T.; Kozawa, T.; Kobayashi, T.

1998-01-01

Precise measurement of a subpicosecond electron single bunch by the femtosecond streak camera is presented. The subpicosecond electron single bunch of energy 35 MeV was generated by the achromatic magnetic pulse compressor at the S-band linear accelerator of nuclear engineering research laboratory (NERL), University of Tokyo. The electric charge per bunch and beam size are 0.5 nC and the horizontal and vertical beam sizes are 3.3 and 5.5 mm (full width at half maximum; FWHM), respectively. Pulse shape of the electron single bunch is measured via Cherenkov radiation emitted in air by the femtosecond streak camera. Optical parameters of the optical measurement system were optimized based on much experiment and numerical analysis in order to achieve a subpicosecond time resolution. By using the optimized optical measurement system, the subpicosecond pulse shape, its variation for the differents rf phases in the accelerating tube, the jitter of the total system and the correlation between measured streak images and calculated longitudinal phase space distributions were precisely evaluated. This measurement system is going to be utilized in several subpicosecond analyses for radiation physics and chemistry. (orig.)

Inactivation of the Huntington's disease gene (Hdh impairs anterior streak formation and early patterning of the mouse embryo

Directory of Open Access Journals (Sweden)

Conlon Ronald A

2005-08-01

Full Text Available Abstract Background Huntingtin, the HD gene encoded protein mutated by polyglutamine expansion in Huntington's disease, is required in extraembryonic tissues for proper gastrulation, implicating its activities in nutrition or patterning of the developing embryo. To test these possibilities, we have used whole mount in situ hybridization to examine embryonic patterning and morphogenesis in homozygous Hdhex4/5 huntingtin deficient embryos. Results In the absence of huntingtin, expression of nutritive genes appears normal but E7.0–7.5 embryos exhibit a unique combination of patterning defects. Notable are a shortened primitive streak, absence of a proper node and diminished production of anterior streak derivatives. Reduced Wnt3a, Tbx6 and Dll1 expression signify decreased paraxial mesoderm and reduced Otx2 expression and lack of headfolds denote a failure of head development. In addition, genes initially broadly expressed are not properly restricted to the posterior, as evidenced by the ectopic expression of Nodal, Fgf8 and Gsc in the epiblast and T (Brachyury and Evx1 in proximal mesoderm derivatives. Despite impaired posterior restriction and anterior streak deficits, overall anterior/posterior polarity is established. A single primitive streak forms and marker expression shows that the anterior epiblast and anterior visceral endoderm (AVE are specified. Conclusion Huntingtin is essential in the early patterning of the embryo for formation of the anterior region of the primitive streak, and for down-regulation of a subset of dynamic growth and transcription factor genes. These findings provide fundamental starting points for identifying the novel cellular and molecular activities of huntingtin in the extraembryonic tissues that govern normal anterior streak development. This knowledge may prove to be important for understanding the mechanism by which the dominant polyglutamine expansion in huntingtin determines the loss of neurons in

Inactivation of the Huntington's disease gene (Hdh) impairs anterior streak formation and early patterning of the mouse embryo.

Science.gov (United States)

Woda, Juliana M; Calzonetti, Teresa; Hilditch-Maguire, Paige; Duyao, Mabel P; Conlon, Ronald A; MacDonald, Marcy E

2005-08-18

Huntingtin, the HD gene encoded protein mutated by polyglutamine expansion in Huntington's disease, is required in extraembryonic tissues for proper gastrulation, implicating its activities in nutrition or patterning of the developing embryo. To test these possibilities, we have used whole mount in situ hybridization to examine embryonic patterning and morphogenesis in homozygous Hdh(ex4/5) huntingtin deficient embryos. In the absence of huntingtin, expression of nutritive genes appears normal but E7.0-7.5 embryos exhibit a unique combination of patterning defects. Notable are a shortened primitive streak, absence of a proper node and diminished production of anterior streak derivatives. Reduced Wnt3a, Tbx6 and Dll1 expression signify decreased paraxial mesoderm and reduced Otx2 expression and lack of headfolds denote a failure of head development. In addition, genes initially broadly expressed are not properly restricted to the posterior, as evidenced by the ectopic expression of Nodal, Fgf8 and Gsc in the epiblast and T (Brachyury) and Evx1 in proximal mesoderm derivatives. Despite impaired posterior restriction and anterior streak deficits, overall anterior/posterior polarity is established. A single primitive streak forms and marker expression shows that the anterior epiblast and anterior visceral endoderm (AVE) are specified. Huntingtin is essential in the early patterning of the embryo for formation of the anterior region of the primitive streak, and for down-regulation of a subset of dynamic growth and transcription factor genes. These findings provide fundamental starting points for identifying the novel cellular and molecular activities of huntingtin in the extraembryonic tissues that govern normal anterior streak development. This knowledge may prove to be important for understanding the mechanism by which the dominant polyglutamine expansion in huntingtin determines the loss of neurons in Huntington's disease.

Visceral endoderm and the primitive streak interact to build the fetal-placental interface of the mouse gastrula.

Science.gov (United States)

Rodriguez, Adriana M; Downs, Karen M

2017-12-01

Hypoblast/visceral endoderm assists in amniote nutrition, axial positioning and formation of the gut. Here, we provide evidence, currently limited to humans and non-human primates, that hypoblast is a purveyor of extraembryonic mesoderm in the mouse gastrula. Fate mapping a unique segment of axial extraembryonic visceral endoderm associated with the allantoic component of the primitive streak, and referred to as the "AX", revealed that visceral endoderm supplies the placentae with extraembryonic mesoderm. Exfoliation of the AX was dependent upon contact with the primitive streak, which modulated Hedgehog signaling. Resolution of the AX's epithelial-to-mesenchymal transition (EMT) by Hedgehog shaped the allantois into its characteristic projectile and individualized placental arterial vessels. A unique border cell separated the delaminating AX from the yolk sac blood islands which, situated beyond the limit of the streak, were not formed by an EMT. Over time, the AX became the hindgut lip, which contributed extensively to the posterior interface, including both embryonic and extraembryonic tissues. The AX, in turn, imparted antero-posterior (A-P) polarity on the primitive streak and promoted its elongation and differentiation into definitive endoderm. Results of heterotopic grafting supported mutually interactive functions of the AX and primitive streak, showing that together, they self-organized into a complete version of the fetal-placental interface, forming an elongated structure that exhibited A-P polarity and was composed of the allantois, an AX-derived rod-like axial extension reminiscent of the embryonic notochord, the placental arterial vasculature and visceral endoderm/hindgut. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Significance and transmission of maize streak virus disease in Africa ...

African Journals Online (AJOL)

STORAGESEVER

2008-12-29

Dec 29, 2008 ... soil nutrients, altitude and temperature on the biology of maize streak virus (MSV) / vector populations is discussed. ... status of maize host plants and its effects on population dynamics of Cicadulina mbila Naudé. (Homoptera: ..... time necessary for the leafhopper to reach the mesophyll of the leaf and ingest ...

Target 3-D reconstruction of streak tube imaging lidar based on Gaussian fitting

Science.gov (United States)

Yuan, Qingyu; Niu, Lihong; Hu, Cuichun; Wu, Lei; Yang, Hongru; Yu, Bing

2018-02-01

Streak images obtained by the streak tube imaging lidar (STIL) contain the distance-azimuth-intensity information of a scanned target, and a 3-D reconstruction of the target can be carried out through extracting the characteristic data of multiple streak images. Significant errors will be caused in the reconstruction result by the peak detection method due to noise and other factors. So as to get a more precise 3-D reconstruction, a peak detection method based on Gaussian fitting of trust region is proposed in this work. Gaussian modeling is performed on the returned wave of single time channel of each frame, then the modeling result which can effectively reduce the noise interference and possesses a unique peak could be taken as the new returned waveform, lastly extracting its feature data through peak detection. The experimental data of aerial target is for verifying this method. This work shows that the peak detection method based on Gaussian fitting reduces the extraction error of the feature data to less than 10%; utilizing this method to extract the feature data and reconstruct the target make it possible to realize the spatial resolution with a minimum 30 cm in the depth direction, and improve the 3-D imaging accuracy of the STIL concurrently.

MR imaging of medullary streaks in osteosclerosis: a case report

International Nuclear Information System (INIS)

Lee, Hak Soo; Joo, Kyung Bin; Park, Tae Soo; Song, Ho Taek; Kim, Yong Soo; Park, Dong Woo; Park, Choong Ki

2000-01-01

We present a case of medullary sclerosis of the appendicular skeleton in a patient with chronic renal insufficiency for whom MR imaging findings were characteristic. T1- and T2-weighted MR images showed multiple vertical lines (medullary streaks) of low signal intensity in the metaphyses and diaphyses of the distal femur and proximal tibia

Geographical gradient of the eIF4E alleles conferring resistance to potyviruses in pea (Pisum) germplasm.

Science.gov (United States)

Konečná, Eva; Šafářová, Dana; Navrátil, Milan; Hanáček, Pavel; Coyne, Clarice; Flavell, Andrew; Vishnyakova, Margarita; Ambrose, Mike; Redden, Robert; Smýkal, Petr

2014-01-01

The eukaryotic translation initiation factor 4E was shown to be involved in resistance against several potyviruses in plants, including pea. We combined our knowledge of pea germplasm diversity with that of the eIF4E gene to identify novel genetic diversity. Germplasm of 2803 pea accessions was screened for eIF4E intron 3 length polymorphism, resulting in the detection of four eIF4E(A-B-C-S) variants, whose distribution was geographically structured. The eIF4E(A) variant conferring resistance to the P1 PSbMV pathotype was found in 53 accessions (1.9%), of which 15 were landraces from India, Afghanistan, Nepal, and 7 were from Ethiopia. A newly discovered variant, eIF4E(B), was present in 328 accessions (11.7%) from Ethiopia (29%), Afghanistan (23%), India (20%), Israel (25%) and China (39%). The eIF4E(C) variant was detected in 91 accessions (3.2% of total) from India (20%), Afghanistan (33%), the Iberian Peninsula (22%) and the Balkans (9.3%). The eIF4E(S) variant for susceptibility predominated as the wild type. Sequencing of 73 samples, identified 34 alleles at the whole gene, 26 at cDNA and 19 protein variants, respectively. Fifteen alleles were virologically tested and 9 alleles (eIF4E(A-1-2-3-4-5-6-7), eIF4E(B-1), eIF4E(C-2)) conferred resistance to the P1 PSbMV pathotype. This work identified novel eIF4E alleles within geographically structured pea germplasm and indicated their independent evolution from the susceptible eIF4E(S1) allele. Despite high variation present in wild Pisum accessions, none of them possessed resistance alleles, supporting a hypothesis of distinct mode of evolution of resistance in wild as opposed to crop species. The Highlands of Central Asia, the northern regions of the Indian subcontinent, Eastern Africa and China were identified as important centers of pea diversity that correspond with the diversity of the pathogen. The series of alleles identified in this study provides the basis to study the co-evolution of potyviruses and the

STREAK CAMERA MEASUREMENTS OF THE APS PC GUN DRIVE LASER

Energy Technology Data Exchange (ETDEWEB)

Dooling, J. C.; Lumpkin, A. H.

2017-06-25

We report recent pulse-duration measurements of the APS PC Gun drive laser at both second harmonic and fourth harmonic wavelengths. The drive laser is a Nd:Glass-based chirped pulsed amplifier (CPA) operating at an IR wavelength of 1053 nm, twice frequency-doubled to obtain UV output for the gun. A Hamamatsu C5680 streak camera and an M5675 synchroscan unit are used for these measurements; the synchroscan unit is tuned to 119 MHz, the 24th subharmonic of the linac s-band operating frequency. Calibration is accomplished both electronically and optically. Electronic calibration utilizes a programmable delay line in the 119 MHz rf path. The optical delay uses an etalon with known spacing between reflecting surfaces and is coated for the visible, SH wavelength. IR pulse duration is monitored with an autocorrelator. Fitting the streak camera image projected profiles with Gaussians, UV rms pulse durations are found to vary from 2.1 ps to 3.5 ps as the IR varies from 2.2 ps to 5.2 ps.

Development of intelligent control system for X-ray streak camera in diagnostic instrument manipulator

International Nuclear Information System (INIS)

Pei, Chengquan; Wu, Shengli; Tian, Jinshou; Liu, Zhen; Fang, Yuman; Gao, Guilong; Liang, Lingliang; Wen, Wenlong

2015-01-01

An intelligent control system for an X ray streak camera in a diagnostic instrument manipulator (DIM) is proposed and implemented, which can control time delay, electric focusing, image gain adjustment, switch of sweep voltage, acquiring environment parameters etc. The system consists of 16 A/D converters and 16 D/A converters, a 32-channel general purpose input/output (GPIO) and two sensors. An isolated DC/DC converter with multi-outputs and a single mode fiber were adopted to reduce the interference generated by the common ground among the A/D, D/A and I/O. The software was designed using graphical programming language and can remotely access the corresponding instrument from a website. The entire intelligent control system can acquire the desirable data at a speed of 30 Mb/s and store it for later analysis. The intelligent system was implemented on a streak camera in a DIM and it shows a temporal resolution of 11.25 ps, spatial distortion of less than 10% and dynamic range of 279:1. The intelligent control system has been successfully used in a streak camera to verify the synchronization of multi-channel laser on the Inertial Confinement Fusion Facility

Development of intelligent control system for X-ray streak camera in diagnostic instrument manipulator

Energy Technology Data Exchange (ETDEWEB)

Pei, Chengquan [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi' an 710049 (China); Wu, Shengli, E-mail: slwu@mail.xjtu.edu.cn [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi' an 710049 (China); Tian, Jinshou [Xi' an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); Liu, Zhen [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi' an 710049 (China); Fang, Yuman [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi' an 710049 (China); University of the Chinese Academy of Sciences, Beijing 100039 (China); Gao, Guilong; Liang, Lingliang [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi' an 710049 (China); Xi' an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); University of the Chinese Academy of Sciences, Beijing 100039 (China); Wen, Wenlong [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi' an 710049 (China)

2015-11-01

An intelligent control system for an X ray streak camera in a diagnostic instrument manipulator (DIM) is proposed and implemented, which can control time delay, electric focusing, image gain adjustment, switch of sweep voltage, acquiring environment parameters etc. The system consists of 16 A/D converters and 16 D/A converters, a 32-channel general purpose input/output (GPIO) and two sensors. An isolated DC/DC converter with multi-outputs and a single mode fiber were adopted to reduce the interference generated by the common ground among the A/D, D/A and I/O. The software was designed using graphical programming language and can remotely access the corresponding instrument from a website. The entire intelligent control system can acquire the desirable data at a speed of 30 Mb/s and store it for later analysis. The intelligent system was implemented on a streak camera in a DIM and it shows a temporal resolution of 11.25 ps, spatial distortion of less than 10% and dynamic range of 279:1. The intelligent control system has been successfully used in a streak camera to verify the synchronization of multi-channel laser on the Inertial Confinement Fusion Facility.

The same allele of translation initiation factor 4E mediates resistance against two Potyvirus spp. in Pisum sativum

DEFF Research Database (Denmark)

Bruun-Rasmussen, M.; Møller, I.S.; Tulinius, G.

2007-01-01

to linkage group VI together with other Potyvirus resistances. One of these, sbm1, confers resistance to strains of Pea seedborne mosaic virus and previously has been identified as a mutant allele of the eukaryotic translation initiation factor 4E gene (eIF4E). Sequence comparison of eIF4E from BYMV...... was overcome, and virus from these plants had a codon change causing an Arg to His change at position 116 of the predicted viral genome-linked protein (VPg). Accordingly, plants carrying the wlv resistance gene were infected upon inoculation with BYMV-W derived from cDNA with a His codon at position 116...

Transient expression of HPV16 E7 peptide (aa 44-60) and HPV16 L2 peptide (aa 108-120) on chimeric potyvirus-like particles using Potato virus X-based vector

Czech Academy of Sciences Publication Activity Database

Čeřovská, Noemi; Hoffmeisterová, Hana; Pečenková, Tamara; Moravec, Tomáš; Synková, Helena; Plchová, Helena; Velemínský, Jiří

2008-01-01

Roč. 58, č. 1 (2008), s. 154-161 ISSN 1046-5928 R&D Projects: GA ČR GA521/06/0973 Institutional research plan: CEZ:AV0Z50380511 Source of funding: V - iné verejné zdroje Keywords : epitopes expression * Human papillomavirus * transient expression * potyvirus-like particles * synergistic infection Subject RIV: EB - Gen etics ; Molecular Biology Impact factor: 1.621, year: 2008

Ultrafast streak and framing technique for the observation of laser driven shock waves in transparent solid targets

International Nuclear Information System (INIS)

Van Kessel, C.G.M.; Sachsenmaier, P.; Sigel, R.

1975-01-01

Shock waves driven by laser ablation in plane transparent plexiglass and solid hydrogen targets have been observed with streak and framing techniques using a high speed image converter camera, and a dye laser as a light source. The framing pictures have been made by mode locking the dye laser and using a wide streak slit. In both materials a growing hemispherical shock wave is observed with the maximum velocity at the onset of laser radiation. (author)

Time-resolved brightness measurements by streaking

Science.gov (United States)

Torrance, Joshua S.; Speirs, Rory W.; McCulloch, Andrew J.; Scholten, Robert E.

2018-03-01

Brightness is a key figure of merit for charged particle beams, and time-resolved brightness measurements can elucidate the processes involved in beam creation and manipulation. Here we report on a simple, robust, and widely applicable method for the measurement of beam brightness with temporal resolution by streaking one-dimensional pepperpots, and demonstrate the technique to characterize electron bunches produced from a cold-atom electron source. We demonstrate brightness measurements with 145 ps temporal resolution and a minimum resolvable emittance of 40 nm rad. This technique provides an efficient method of exploring source parameters and will prove useful for examining the efficacy of techniques to counter space-charge expansion, a critical hurdle to achieving single-shot imaging of atomic scale targets.

Temporal resolution limit estimation of x-ray streak cameras using a CsI photocathode

Energy Technology Data Exchange (ETDEWEB)

Li, Xiang; Gu, Li; Zong, Fangke; Zhang, Jingjin; Yang, Qinlao, E-mail: qlyang@szu.edu.cn [Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, Institute of Optoelectronics, Shenzhen University, Shenzhen 518060 (China)

2015-08-28

A Monte Carlo model is developed and implemented to calculate the characteristics of x-ray induced secondary electron (SE) emission from a CsI photocathode used in an x-ray streak camera. Time distributions of emitted SEs are investigated with an incident x-ray energy range from 1 to 30 keV and a CsI thickness range from 100 to 1000 nm. Simulation results indicate that SE time distribution curves have little dependence on the incident x-ray energy and CsI thickness. The calculated time dispersion within the CsI photocathode is about 70 fs, which should be the temporal resolution limit of x-ray streak cameras that use CsI as the photocathode material.

Oct4 is required ~E7.5 for proliferation in the primitive streak.

Directory of Open Access Journals (Sweden)

Brian DeVeale

2013-11-01

Full Text Available Oct4 is a widely recognized pluripotency factor as it maintains Embryonic Stem (ES cells in a pluripotent state, and, in vivo, prevents the inner cell mass (ICM in murine embryos from differentiating into trophectoderm. However, its function in somatic tissue after this developmental stage is not well characterized. Using a tamoxifen-inducible Cre recombinase and floxed alleles of Oct4, we investigated the effect of depleting Oct4 in mouse embryos between the pre-streak and headfold stages, ~E6.0-E8.0, when Oct4 is found in dynamic patterns throughout the embryonic compartment of the mouse egg cylinder. We found that depletion of Oct4 ~E7.5 resulted in a severe phenotype, comprised of craniorachischisis, random heart tube orientation, failed turning, defective somitogenesis and posterior truncation. Unlike in ES cells, depletion of the pluripotency factors Sox2 and Oct4 after E7.0 does not phenocopy, suggesting that ~E7.5 Oct4 is required within a network that is altered relative to the pluripotency network. Oct4 is not required in extraembryonic tissue for these processes, but is required to maintain cell viability in the embryo and normal proliferation within the primitive streak. Impaired expansion of the primitive streak occurs coincident with Oct4 depletion ∼E7.5 and precedes deficient convergent extension which contributes to several aspects of the phenotype.

Electron streaking in the autoionization region of H2

International Nuclear Information System (INIS)

Palacios, Alicia; González-Castrillo, Alberto; Martín, Fernando

2015-01-01

We use a UV-pump/IR-probe scheme, combining a single attosecond UV pulse and a 750 nm IR pulse, to explore laser-assisted photoionization of the hydrogen molecule in the autoionization region. The electron energy distributions exhibit unusual streaking patterns that are explored for different angles of the electron ejection with respect to the polarization vector and the molecular axis. Moreover, by controlling the time delay between the pulses, we observe that one can suppress the autoionization channel. (paper)

Compact optical technique for streak camera calibration

International Nuclear Information System (INIS)

Bell, Perry; Griffith, Roger; Hagans, Karla; Lerche, Richard; Allen, Curt; Davies, Terence; Janson, Frans; Justin, Ronald; Marshall, Bruce; Sweningsen, Oliver

2004-01-01

To produce accurate data from optical streak cameras requires accurate temporal calibration sources. We have reproduced an older technology for generating optical timing marks that had been lost due to component availability. Many improvements have been made which allow the modern units to service a much larger need. Optical calibrators are now available that produce optical pulse trains of 780 nm wavelength light at frequencies ranging from 0.1 to 10 GHz, with individual pulse widths of approximately 25 ps full width half maximum. Future plans include the development of single units that produce multiple frequencies to cover a wide temporal range, and that are fully controllable via an RS232 interface

Compact optical technique for streak camera calibration

Science.gov (United States)

Bell, Perry; Griffith, Roger; Hagans, Karla; Lerche, Richard; Allen, Curt; Davies, Terence; Janson, Frans; Justin, Ronald; Marshall, Bruce; Sweningsen, Oliver

2004-10-01

To produce accurate data from optical streak cameras requires accurate temporal calibration sources. We have reproduced an older technology for generating optical timing marks that had been lost due to component availability. Many improvements have been made which allow the modern units to service a much larger need. Optical calibrators are now available that produce optical pulse trains of 780 nm wavelength light at frequencies ranging from 0.1 to 10 GHz, with individual pulse widths of approximately 25 ps full width half maximum. Future plans include the development of single units that produce multiple frequencies to cover a wide temporal range, and that are fully controllable via an RS232 interface.

Sweep time performance of optic streak camera

International Nuclear Information System (INIS)

Wang Zhebin; Yang Dong; Zhang Huige

2012-01-01

The sweep time performance of the optic streak camera (OSC) is of critical importance to its application. The systematic analysis of full-screen sweep velocity shows that the traditional method based on the averaged velocity and its nonlinearity would increase the uncertainty of sweep time and can not reflect the influence of the spatial distortion of OSC. A elaborate method for sweep time has been developed with the aid of full-screen sweep velocity and its uncertainty. It is proved by the theoretical analysis and experimental study that the method would decrease the uncertainty of sweep time within 1%, which would improve the accuracy of sweep time and the reliability of OSC application. (authors)

Rho kinase activity controls directional cell movements during primitive streak formation in the rabbit embryo.

Science.gov (United States)

Stankova, Viktoria; Tsikolia, Nikoloz; Viebahn, Christoph

2015-01-01

During animal gastrulation, the specification of the embryonic axes is accompanied by epithelio-mesenchymal transition (EMT), the first major change in cell shape after fertilization. EMT takes place in disparate topographical arrangements, such as the circular blastopore of amphibians, the straight primitive streak of birds and mammals or in intermediate gastrulation forms of other amniotes such as reptiles. Planar cell movements are prime candidates to arrange specific modes of gastrulation but there is no consensus view on their role in different vertebrate classes. Here, we test the impact of interfering with Rho kinase-mediated cell movements on gastrulation topography in blastocysts of the rabbit, which has a flat embryonic disc typical for most mammals. Time-lapse video microscopy, electron microscopy, gene expression and morphometric analyses of the effect of inhibiting ROCK activity showed - besides normal specification of the organizer region - a dose-dependent disruption of primitive streak formation; this disruption resulted in circular, arc-shaped or intermediate forms, reminiscent of those found in amphibians, fishes and reptiles. Our results reveal a crucial role of ROCK-controlled directional cell movements during rabbit primitive streak formation and highlight the possibility that temporal and spatial modulation of cell movements were instrumental for the evolution of gastrulation forms. © 2015. Published by The Company of Biologists Ltd.

Simultaneous streak and frame interferometry for electron density measurements of laser produced plasmas

Energy Technology Data Exchange (ETDEWEB)

Quevedo, H. J., E-mail: hjquevedo@utexas.edu; McCormick, M.; Wisher, M.; Bengtson, Roger D.; Ditmire, T. [Center for High Energy Density Science, Department of Physics, University of Texas at Austin, Austin, Texas 78712 (United States)

2016-01-15

A system of two collinear probe beams with different wavelengths and pulse durations was used to capture simultaneously snapshot interferograms and streaked interferograms of laser produced plasmas. The snapshots measured the two dimensional, path-integrated, electron density on a charge-coupled device while the radial temporal evolution of a one dimensional plasma slice was recorded by a streak camera. This dual-probe combination allowed us to select plasmas that were uniform and axisymmetric along the laser direction suitable for retrieving the continuous evolution of the radial electron density of homogeneous plasmas. Demonstration of this double probe system was done by measuring rapidly evolving plasmas on time scales less than 1 ns produced by the interaction of femtosecond, high intensity, laser pulses with argon gas clusters. Experiments aimed at studying homogeneous plasmas from high intensity laser-gas or laser-cluster interaction could benefit from the use of this probing scheme.

Angioid streaks in a case of Camurati–Engelmann disease

Directory of Open Access Journals (Sweden)

Betül Tugcu

2017-01-01

Full Text Available Camurati–Engelmann disease (CED is a rare autosomal dominant disease with various phenotypic expressions. The hallmark of the disease is bilateral symmetric diaphyseal hyperostosis of the long bones with progressive involvement of the metaphysis. Ocular manifestations occur rarely and mainly result from bony overgrowth of the orbit and optic canal stenosis. We report a case of CED showing angioid streaks (ASs in both fundi with no macular involvement and discuss the possible theories of the pathogenesis of AS in this disease.

X-ray streak-camera study of the dynamics of laser-imploded microballoons

International Nuclear Information System (INIS)

Key, M.H.; Lamb, M.J.; Lewis, C.L.S.; Moore, A.; Evans, R.G.

1979-01-01

The time and space development of the x-ray emission from the irradiated target surface and the implosion core in laser-compressed glass microballoons is recorded by x-ray streak photography. The experimental variation of implosion time with target mass and laser energy is considered and compared with computer modeling of the implosion

Nuclear import of Maize fine streak virus proteins in Drosophila S2 cells

Science.gov (United States)

Maize fine streak virus (MFSV) is a member of the genus Nucleorhabdovirus, family Rhabdoviridae and is transmitted by the leafhopper Graminella nigrifons. The virus replicates in both its plant host and in its insect vector. Nucleorhabdoviruses replicate in the nucleus and assemble at the inner nu...

Streak-photographic investigation of shock wave emission after laser-induced plasma formation in water

Science.gov (United States)

Noack, Joachim; Vogel, Alfred

1995-05-01

The shock wave emission after dielectric breakdown in water was investigated to assess potential shock wave effects in plasma mediated tissue ablation and intraocular photodisruption. Of particular interest was the dependence of shock wave pressure as a function of distance from the plasma for different laser pulse energies. We have generated plasmas in water with a Nd:YAG laser system delivering pulses of 6 ns duration. The pulses, with energies between 0.4 and 36 mJ (approximately equals 180 times threshold), were focused into a cuvette containing distilled water. The shock wave was visualized with streak photography combined with a schlieren technique. An important advantage of this technique is that the shock position as a function of time can directly be obtained from a single streak and hence a single event. Other methods (e.g. flash photography or passage time measurements between fixed locations) in contrast rely on reproducible events. Using the shock wave speed obtained from the streak images, shock wave peak pressures were calculated providing detailed information on the propagation of the shock. The shock peak pressure as a function of distance r from the optical axis was found to decrease faster than 1/r2 in regions up to distances of 100-150 micrometers . For larger distances it was found to be roughly proportional to 1/r. The scaling law for maximum shock pressure p, at a given distance was found to be proportional to the square root of the laser pulse energy E for distances of 50-200 micrometers from the optical axis.

Identification and Removal of High Frequency Temporal Noise in a Nd:YAG Macro-Pulse Laser Assisted with a Diagnostic Streak Camera

International Nuclear Information System (INIS)

Kent Marlett; Ke-Xun Sun

2004-01-01

This paper discusses the use of a reference streak camera (SC) to diagnose laser performance and guide modifications to remove high frequency noise from Bechtel Nevada's long-pulse laser. The upgraded laser exhibits less than 0.1% high frequency noise in cumulative spectra, exceeding National Ignition Facility (NIF) calibration specifications. Inertial Confinement Fusion (ICF) experiments require full characterization of streak cameras over a wide range of sweep speeds (10 ns to 480 ns). This paradigm of metrology poses stringent spectral requirements on the laser source for streak camera calibration. Recently, Bechtel Nevada worked with a laser vendor to develop a high performance, multi-wavelength Nd:YAG laser to meet NIF calibration requirements. For a typical NIF streak camera with a 4096 x 4096 pixel CCD, the flat field calibration at 30 ns requires a smooth laser spectrum over 33 MHz to 68 GHz. Streak cameras are the appropriate instrumentation for measuring laser amplitude noise at these very high frequencies since the upper end spectral content is beyond the frequency response of typical optoelectronic detectors for a single shot pulse. The SC was used to measure a similar laser at its second harmonic wavelength (532 nm), to establish baseline spectra for testing signal analysis algorithms. The SC was then used to measure the new custom calibration laser. In both spatial-temporal measurements and cumulative spectra, 6-8 GHz oscillations were identified. The oscillations were found to be caused by inter-surface reflections between amplifiers. Additional variations in the SC spectral data were found to result from temperature instabilities in the seeding laser. Based on these findings, laser upgrades were made to remove the high frequency noise from the laser output

Mechanism for propagation of the step leader of streak lightning

International Nuclear Information System (INIS)

Golubev, A.I.; Zolotovskil, V.I.; Ivanovskil, A.V.

1992-01-01

A hypothetical scheme for the development of the step leader of streak lightning is discussed. The mathematical problem of modeling the propagation of the leader in this scheme is stated. The main parameters of the leader are estimated: the length and propagation velocity of the step, the average propagation velocity, etc. This is compared with data from observations in nature. The propagation of the leader is simulated numerically. Results of the calculation are presented for two 'flashes' of the step leader. 25 refs., 6 figs

A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

International Nuclear Information System (INIS)

Labaria, George R.; Warrick, Abbie L.; Celliers, Peter M.; Kalantar, Daniel H.

2015-01-01

The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

A Robust In-Situ Warp-Correction Algorithm For VISAR Streak Camera Data at the National Ignition Facility

Energy Technology Data Exchange (ETDEWEB)

Labaria, George R. [Univ. of California, Santa Cruz, CA (United States); Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Warrick, Abbie L. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Celliers, Peter M. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States); Kalantar, Daniel H. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2015-01-12

The National Ignition Facility (NIF) at the Lawrence Livermore National Laboratory is a 192-beam pulsed laser system for high-energy-density physics experiments. Sophisticated diagnostics have been designed around key performance metrics to achieve ignition. The Velocity Interferometer System for Any Reflector (VISAR) is the primary diagnostic for measuring the timing of shocks induced into an ignition capsule. The VISAR system utilizes three streak cameras; these streak cameras are inherently nonlinear and require warp corrections to remove these nonlinear effects. A detailed calibration procedure has been developed with National Security Technologies (NSTec) and applied to the camera correction analysis in production. However, the camera nonlinearities drift over time, affecting the performance of this method. An in-situ fiber array is used to inject a comb of pulses to generate a calibration correction in order to meet the timing accuracy requirements of VISAR. We develop a robust algorithm for the analysis of the comb calibration images to generate the warp correction that is then applied to the data images. Our algorithm utilizes the method of thin-plate splines (TPS) to model the complex nonlinear distortions in the streak camera data. In this paper, we focus on the theory and implementation of the TPS warp-correction algorithm for the use in a production environment.

Intellectual streaking: The value of teachers exposing minds (and hearts).

Science.gov (United States)

Bearman, Margaret; Molloy, Elizabeth

2017-12-01

As teachers we often ask learners to be vulnerable and yet present ourselves as high status, knowledgeable experts, often with pre-prepared scripts. This paper investigates the metaphoric notion of "intellectual streaking" - the nimble exposure of a teacher's thought processes, dilemmas, or failures - as a way of modeling both reflection-in-action and resilience. While there is a tension between credibility and vulnerability, both of which are necessary for trust, we argue that taking a few risks and revealing deficits in knowledge or performance can be illuminating and valuable for all parties.

Commissioning of the advanced light source dual-axis streak camera

International Nuclear Information System (INIS)

Hinkson, J.; Keller, R.; Byrd, J.

1997-05-01

A dual-axis camera, Hamamatsu model C5680, has been installed on the Advanced Light Source photon-diagnostics beam-line to investigate electron-beam parameters. During its commissioning process, the camera has been used to measure single-bunch length vs. current, relative bunch charge in adjacent RF buckets, and bunchphase stability. In this paper the authors describe the visible-light branch of the diagnostics beam-line, the streak-camera installation, and the timing electronics. They will show graphical results of beam measurements taken during a variety of accelerator conditions

Wheat streak mosaic virus coat protein is a host-specific long-distance transport determinant in oat

Science.gov (United States)

Viral determinants involved in systemic infection of hosts by monocot-infecting plant viruses are poorly understood. Wheat streak mosaic virus (WSMV, genus Tritimovirus, family Potyviridae) exclusively infects monocotyledonous crops such as wheat, oat, barley, maize, triticale, and rye. Previously, ...

Epistatic determinism of durum wheat resistance to the wheat spindle streak mosaic virus.

Science.gov (United States)

Holtz, Yan; Bonnefoy, Michel; Viader, Véronique; Ardisson, Morgane; Rode, Nicolas O; Poux, Gérard; Roumet, Pierre; Marie-Jeanne, Véronique; Ranwez, Vincent; Santoni, Sylvain; Gouache, David; David, Jacques L

2017-07-01

The resistance of durum wheat to the Wheat spindle streak mosaic virus (WSSMV) is controlled by two main QTLs on chromosomes 7A and 7B, with a huge epistatic effect. Wheat spindle streak mosaic virus (WSSMV) is a major disease of durum wheat in Europe and North America. Breeding WSSMV-resistant cultivars is currently the only way to control the virus since no treatment is available. This paper reports studies of the inheritance of WSSMV resistance using two related durum wheat populations obtained by crossing two elite cultivars with a WSSMV-resistant emmer cultivar. In 2012 and 2015, 354 recombinant inbred lines (RIL) were phenotyped using visual notations, ELISA and qPCR and genotyped using locus targeted capture and sequencing. This allowed us to build a consensus genetic map of 8568 markers and identify three chromosomal regions involved in WSSMV resistance. Two major regions (located on chromosomes 7A and 7B) jointly explain, on the basis of epistatic interactions, up to 43% of the phenotypic variation. Flanking sequences of our genetic markers are provided to facilitate future marker-assisted selection of WSSMV-resistant cultivars.

Streak camera measurements of laser pulse temporal dispersion in short graded-index optical fibers

International Nuclear Information System (INIS)

Lerche, R.A.; Phillips, G.E.

1981-01-01

Streak camera measurements were used to determine temporal dispersion in short (5 to 30 meter) graded-index optical fibers. Results show that 50-ps, 1.06-μm and 0.53-μm laser pulses can be propagated without significant dispersion when care is taken to prevent propagation of energy in fiber cladding modes

Evaluation of banana hybrids for tolerance to black leaf streak (Mycosphaerella fijiensis Morelet) in Puerto Rico

Science.gov (United States)

In Puerto Rico, bananas (including plantains) are important agricultural commodities; their combined production totaled 133,500 tons in 2008. Black leaf streak (BLS) and Sigatoka leaf spot diseases, caused by Mycosphaerella fijiensis and M. musicola, respectively, are responsible for significant los...

Cheap streak camera based on the LD-S-10 intensifier tube

Science.gov (United States)

Dashevsky, Boris E.; Krutik, Mikhail I.; Surovegin, Alexander L.

1992-01-01

Basic properties of a new streak camera and its test results are reported. To intensify images on its screen, we employed modular G1 tubes, the LD-A-1.0 and LD-A-0.33, enabling magnification of 1.0 and 0.33, respectively. If necessary, the LD-A-0.33 tube may be substituted by any other image intensifier of the LDA series, the choice to be determined by the size of the CCD matrix with fiber-optical windows. The reported camera employs a 12.5- mm-long CCD strip consisting of 1024 pixels, each 12 X 500 micrometers in size. Registered radiation was imaged on a 5 X 0.04 mm slit diaphragm tightly connected with the LD-S- 10 fiber-optical input window. Electrons escaping the cathode are accelerated in a 5 kV electric field and focused onto a phosphor screen covering a fiber-optical plate as they travel between deflection plates. Sensitivity of the latter was 18 V/mm, which implies that the total deflecting voltage was 720 V per 40 mm of the screen surface, since reversed-polarity scan pulses +360 V and -360 V were applied across the deflection plate. The streak camera provides full scan times over the screen of 15, 30, 50, 100, 250, and 500 ns. Timing of the electrically or optically driven camera was done using a 10 ns step-controlled-delay (0 - 500 ns) circuit.

Construction of Double Right-Border Binary Vector Carrying Non-Host Gene Rxol Resistant to Bacterial Leaf Streak of Rice

Institute of Scientific and Technical Information of China (English)

Xu Mei-rong; XIA Zhi-hui; ZHAI Wen-xue; XU Jian-long; ZHOU Yong-li; LI Zhi-kang

2008-01-01

Rxol cloned from maize is a non-host gene resistant to bacterial leaf streak of rice. pCAMBIA1305-1 with Rxol was digested with Sca Ⅰ and NgoM Ⅳ and the double right-border binary vector pMNDRBBin6 was digested with Hpa Ⅰ and Xma Ⅰ.pMNDRBBin6 carrying the gene Rxol was acquired by ligation of blunt-end and cohesive end. The results of PCR, restriction enzyme analysis and sequencing indicated that the Rxol gene had been cloned into pMNDRBBin6. This double right-border binary vector,named as pMNDRBBin6-Rxol, will play a role in breeding marker-free plants resistant to bacterial leaf streak of rice by genetic transformation.

Statistical iterative reconstruction for streak artefact reduction when using multidetector CT to image the dento-alveolar structures.

Science.gov (United States)

Dong, J; Hayakawa, Y; Kober, C

2014-01-01

When metallic prosthetic appliances and dental fillings exist in the oral cavity, the appearance of metal-induced streak artefacts is not avoidable in CT images. The aim of this study was to develop a method for artefact reduction using the statistical reconstruction on multidetector row CT images. Adjacent CT images often depict similar anatomical structures. Therefore, reconstructed images with weak artefacts were attempted using projection data of an artefact-free image in a neighbouring thin slice. Images with moderate and strong artefacts were continuously processed in sequence by successive iterative restoration where the projection data was generated from the adjacent reconstructed slice. First, the basic maximum likelihood-expectation maximization algorithm was applied. Next, the ordered subset-expectation maximization algorithm was examined. Alternatively, a small region of interest setting was designated. Finally, the general purpose graphic processing unit machine was applied in both situations. The algorithms reduced the metal-induced streak artefacts on multidetector row CT images when the sequential processing method was applied. The ordered subset-expectation maximization and small region of interest reduced the processing duration without apparent detriments. A general-purpose graphic processing unit realized the high performance. A statistical reconstruction method was applied for the streak artefact reduction. The alternative algorithms applied were effective. Both software and hardware tools, such as ordered subset-expectation maximization, small region of interest and general-purpose graphic processing unit achieved fast artefact correction.

Molecular confirmation of Maize rayado fino virus as the Brazilian corn streak virus

OpenAIRE

Hammond,Rosemarie Wahnbaeck; Bedendo,Ivan Paulo

2005-01-01

Maize rayado fino virus (MRFV), present in various countries in Latin America, has shown similarities to corn streak virus that occurs in Brazil, regarding pathogenic, serological and histological characteristics. In the current report both virus were molecularly compared to confirm the similarities between them. MRFV was identified by nucleic acid hybridization in samples of maize tissues exhibiting symptoms of "corn stunt" disease, collected from two Brazilian States - São Paulo and Minas G...

Overall comparison of subpicosecond electron beam diagnostics by the polychromator, the interferometer and the femtosecond streak camera

CERN Document Server

Watanabe, T; Yoshimatsu, T; Sasaki, S; Sugiyama, Y; Ishi, K; Shibata, Y; Kondo, Y; Yoshii, K; Ueda, T; Uesaka, M

2002-01-01

Measurements of longitudinal bunch length of subpicosecond and picosecond electron beams have been performed by three methods with three radiation sources at the 35 MeV S-band twin liner accelerators at Nuclear Engineering Research Laboratory, University of Tokyo. The methods we adopt are the femtosecond streak camera with a nondispersive reflective optics, the coherent transition radiation (CTR) Michelson interferometer and the 10 ch polychromator that detects the spectrum of CTR and coherent diffraction radiation (CDR). The measurements by the two CTR methods were independently done with the streak camera and their results were consistent with one another. As a result, the reliability of the polychromator for the diagnostics of less than picosecond electron bunch and the usefulness of the diagnostics for the single shot measurement were verified. Furthermore, perfect nondestructive diagnostics for subpicosecond bunches was performed utilizing CDR interferometry. Then the good agreement between CDR interfero...

Wheat streak mosaic virus coat protein is a determinant for vector transmission by the wheat curl mite

Science.gov (United States)

Wheat streak mosaic virus (WSMV; genus Tritimovirus; family Potyviridae), is transmitted by the wheat curl mite (Aceria tosichella Keifer). The requirement of coat protein (CP) for WSMV transmission by the wheat curl mite was examined using a series of viable deletion and point mutations. Mite trans...

Effects of Hot Streak and Phantom Cooling on Heat Transfer in a Cooled Turbine Stage Including Particulate Deposition

Energy Technology Data Exchange (ETDEWEB)

Bons, Jeffrey [The Ohio State Univ., Columbus, OH (United States); Ameri, Ali [The Ohio State Univ., Columbus, OH (United States)

2016-01-08

The objective of this research effort was to develop a validated computational modeling capability for the characterization of the effects of hot streaks and particulate deposition on the heat load of modern gas turbines. This was accomplished with a multi-faceted approach including analytical, experimental, and computational components. A 1-year no cost extension request was approved for this effort, so the total duration was 4 years. The research effort succeeded in its ultimate objective by leveraging extensive experimental deposition studies complemented by computational modeling. Experiments were conducted with hot streaks, vane cooling, and combinations of hot streaks with vane cooling. These studies contributed to a significant body of corporate knowledge of deposition, in combination with particle rebound and deposition studies funded by other agencies, to provide suitable conditions for the development of a new model. The model includes the following physical phenomena: elastic deformation, plastic deformation, adhesion, and shear removal. It also incorporates material property sensitivity to temperature and tangential-normal velocity rebound cross-dependencies observed in experiments. The model is well-suited for incorporation in CFD simulations of complex gas turbine flows due to its algebraic (explicit) formulation. This report contains model predictions compared to coefficient of restitution data available in the open literature as well as deposition results from two different high temperature turbine deposition facilities. While the model comparisons with experiments are in many cases promising, several key aspects of particle deposition remain elusive. The simple phenomenological nature of the model allows for parametric dependencies to be evaluated in a straightforward manner. This effort also included the first-ever full turbine stage deposition model published in the open literature. The simulations included hot streaks and simulated vane cooling

Genomic and phylogenetic evidence that Maize rough dwarf and Rice black-streaked dwarf fijiviruses should be classified as different geographic strains of a single species.

Science.gov (United States)

Xie, L; Lv, M-F; Yang, J; Chen, J-P; Zhang, H-M

Maize rough dwarf disease (MRDD) has long been known as one of the most devastating viral diseases of maize worldwide and is caused by single or complex infection by four fijiviruses: Maize rough dwarf virus (MRDV) in Europe and the Middle East, Mal de Rio Cuarto virus (MRCV) in South America, rice black-streaked dwarf virus (RBSDV), and Southern rice black-streaked dwarf virus (SRBSDV or Rice black-streaked dwarf virus 2, RBSDV-2) in East Asia. These are currently classified as four distinct species in the genus Fijivirus, family Reoviridae, but their taxonomic status has been questioned. To help resolve this, the nucleotide sequences of the ten genomic segments of an Italian isolate of MRDV have been determined, providing the first complete genomic sequence of this virus. Its genome has 29144 nucleotides and is similar in organization to those of RBSDV, SRBSDV, and MRCV. The 13 ORFs always share highest identities (81.3-97.2%) with the corresponding ORFs of RBSDV and phylogenetic analyses of the different genome segments and ORFs all confirm that MRDV clusters most closely with RBSDV and that MRCV and SRBSDV are slightly more distantly related. The results suggest that MRDV and RBSDV should be classified as different geographic strains of the same virus species and we suggest the name cereal black-streaked dwarf fijivirus (CBSDV) for consideration.

Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance

Science.gov (United States)

Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a costeffective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chrom...

Major QTL Conferring Resistance to Rice Bacterial Leaf Streak

Institute of Scientific and Technical Information of China (English)

无

2006-01-01

Bacterial leaf streak (BLS) is one of the important limiting factors to rice production in southern China and other tropical and sub-tropical areas in Asia. Resistance to BLS was found to be a quantitative trait and no major resistant gene was located in rice until date. In the present study, a new major quantitative trait locus (QTL) conferring resistance to BLS was identified from a highly resistant variety Dular by the employment of Dular/Balilla (DB) and Dular/IR24 (DI) segregation populations and was designated qBLSR-11-1. This QTL was located between the simple sequence repeat (SSR) markers RM120 and RM441 on chromosome 11 and could account for 18.1-21.7% and 36.3% of the variance in DB and DI populations, respectively. The genetic pattern of rice resistance to BLS was discussed.

78 FR 24199 - Streak Products, Inc. v. UTi, United States, Inc.; Notice of Filing of Complaint and Assignment

Science.gov (United States)

2013-04-24

... FEDERAL MARITIME COMMISSION [Docket No. 13--04] Streak Products, Inc. v. UTi, United States, Inc...,'' against UTi, United States, Inc. (``UTi''), hereinafter ``Respondent.'' Complainant states that it is a... therefore, has violated 46 U.S.C. 41104(2). Complainant also alleges that ``UTi engaged in an unfair or...

Synchronization of streak and framing camera measurements of an intense relativistic electron beam propagating through gas

International Nuclear Information System (INIS)

Weidman, D.J.; Murphy, D.P.; Myers, M.C.; Meger, R.A.

1994-01-01

The expansion of the radius of a 5 MeV, 20 kA, 40 ns electron beam from SuperIBEX during propagation through gas is being measured. The beam is generated, conditions, equilibrated, and then passed through a thin foil that produces Cherenkov light, which is recorded by a streak camera. At a second location, the beam hits another Cherenkov emitter, which is viewed by a framing camera. Measurements at these two locations can provide a time-resolved measure of the beam expansion. The two measurements, however, must be synchronized with each other, because the beam radius is not constant throughout the pulse due to variations in beam current and energy. To correlate the timing of the two diagnostics, several shots have been taken with both diagnostics viewing Cherenkov light from the same foil. Experimental measurements of the Cherenkov light from one foil viewed by both diagnostics will be presented to demonstrate the feasibility of correlating the diagnostics with each other. Streak camera data showing the optical fiducial, as well as the final correlation of the two diagnostics, will also be presented. Preliminary beam radius measurements from Cherenkov light measured at two locations will be shown

Picosecond streak camera diagnostics of CO2 laser-produced plasmas

International Nuclear Information System (INIS)

Jaanimagi, P.A.; Marjoribanks, R.S.; Sancton, R.W.; Enright, G.D.; Richardson, M.C.

1979-01-01

The interaction of intense laser radiation with solid targets is currently of considerable interest in laser fusion studies. Its understanding requires temporal knowledge of both laser and plasma parameters on a picosecond time scale. In this paper we describe the progress we have recently made in analysing, with picosecond time resolution, various features of intense nanosecond CO 2 laser pulse interaction experiments. An infrared upconversion scheme, having linear response and <20 ps temporal resolution, has been utilized to characterise the 10 μm laser pulse. Various features of the interaction have been studied with the aid of picosecond IR and x-ray streak cameras. These include the temporal and spatial characteristics of high harmonic emission from the plasma, and the temporal development of the x-ray continuum spectrum. (author)

The ECM moves during primitive streak formation--computation of ECM versus cellular motion.

Directory of Open Access Journals (Sweden)

Evan A Zamir

2008-10-01

Full Text Available Galileo described the concept of motion relativity--motion with respect to a reference frame--in 1632. He noted that a person below deck would be unable to discern whether the boat was moving. Embryologists, while recognizing that embryonic tissues undergo large-scale deformations, have failed to account for relative motion when analyzing cell motility data. A century of scientific articles has advanced the concept that embryonic cells move ("migrate" in an autonomous fashion such that, as time progresses, the cells and their progeny assemble an embryo. In sharp contrast, the motion of the surrounding extracellular matrix scaffold has been largely ignored/overlooked. We developed computational/optical methods that measure the extent embryonic cells move relative to the extracellular matrix. Our time-lapse data show that epiblastic cells largely move in concert with a sub-epiblastic extracellular matrix during stages 2 and 3 in primitive streak quail embryos. In other words, there is little cellular motion relative to the extracellular matrix scaffold--both components move together as a tissue. The extracellular matrix displacements exhibit bilateral vortical motion, convergence to the midline, and extension along the presumptive vertebral axis--all patterns previously attributed solely to cellular "migration." Our time-resolved data pose new challenges for understanding how extracellular chemical (morphogen gradients, widely hypothesized to guide cellular trajectories at early gastrulation stages, are maintained in this dynamic extracellular environment. We conclude that models describing primitive streak cellular guidance mechanisms must be able to account for sub-epiblastic extracellular matrix displacements.

Streaked x-ray spectrometer having a discrete selection of Bragg geometries for Omega

Energy Technology Data Exchange (ETDEWEB)

Millecchia, M.; Regan, S. P.; Bahr, R. E.; Romanofsky, M.; Sorce, C. [Laboratory for Laser Energetics, University of Rochester, Rochester, New York 14623-1299 (United States)

2012-10-15

The streaked x-ray spectrometer (SXS) is used with streak cameras [D. H. Kalantar, P. M. Bell, R. L. Costa, B. A. Hammel, O. L. Landen, T. J. Orzechowski, J. D. Hares, and A. K. L. Dymoke-Bradshaw, in 22nd International Congress on High-Speed Photography and Photonics, edited by D. L. Paisley and A. M. Frank (SPIE, Bellingham, WA, 1997), Vol. 2869, p. 680] positioned with a ten-inch manipulator on OMEGA [T. R. Boehly et al., Opt. Commun. 133, 495 (1997)] and OMEGA EP [L. J. Waxer et al., Presented at CLEO/QELS 2008, San Jose, CA, 4-9 May 2008 (Paper JThB1)] for time-resolved, x-ray spectroscopy of laser-produced plasmas in the 1.4- to 20-keV photon-energy range. These experiments require measuring a portion of this photon-energy range to monitor a particular emission or absorption feature of interest. The SXS relies on a pinned mechanical reference system to create a discrete set of Bragg reflection geometries for a variety of crystals. A wide selection of spectral windows is achieved accurately and efficiently using this technique. It replaces the previous spectrometer designs that had a continuous Bragg angle adjustment and required a tedious alignment calibration procedure. The number of spectral windows needed for the SXS was determined by studying the spectral ranges selected by OMEGA users over the last decade. These selections are easily configured in the SXS using one of the 25 discrete Bragg reflection geometries and one of the six types of Bragg crystals, including two curved crystals.

β-Catenin Regulates Primitive Streak Induction through Collaborative Interactions with SMAD2/SMAD3 and OCT4

DEFF Research Database (Denmark)

Funa, Nina Sofi Ayumi; Schachter, Karen; Lerdrup, Mads

2015-01-01

Canonical Wnt and Nodal signaling are both required for induction of the primitive streak (PS), which guides organization of the early embryo. The Wnt effector b-catenin is thought to function in these early lineage specification decisions via transcriptional activation of Nodal signaling. Here, we...... specification. This study provides mechanistic insight into how Wnt signaling controls early cell lineage decisions....

A fast, noniterative approach for accelerated high-temporal resolution cine-CMR using dynamically interleaved streak removal in the power-spectral encoded domain with low-pass filtering (DISPEL) and modulo-prime spokes (MoPS).

Science.gov (United States)

Kawaji, Keigo; Patel, Mita B; Cantrell, Charles G; Tanaka, Akiko; Marino, Marco; Tamura, Satoshi; Wang, Hui; Wang, Yi; Carroll, Timothy J; Ota, Takeyoshi; Patel, Amit R

2017-07-01

To introduce a pair of accelerated non-Cartesian acquisition principles that when combined, exploit the periodicity of k-space acquisition, and thereby enable acquisition of high-temporal cine Cardiac Magnetic Resonance (CMR). The mathematical formulation of a noniterative, undersampled non-Cartesian cine acquisition and reconstruction is presented. First, a low-pass filtering step that exploits streaking artifact redundancy is provided (i.e., Dynamically Interleaved Streak removal in the Power-spectrum Encoded domain with Low-pass filtering [DISPEL]). Next, an effective radial acquisition for the DISPEL approach that exploits the property of prime numbers is described (i.e., Modulo-Prime Spoke [MoPS]). Both DISPEL and MoPS are examined using numerical simulation of a digital heart phantom to show that high-temporal cine-CMR is feasible without removing physiologic motion vs aperiodic interleaving using Golden Angles. The combined high-temporal cine approach is next examined in 11 healthy subjects for a time-volume curve assessment of left ventricular systolic and diastolic performance vs conventional Cartesian cine-CMR reference. The DISPEL method was first shown using simulation under different streak cycles to allow separation of undersampled radial streaking artifacts from physiologic motion with a sufficiently frequent streak-cycle interval. Radial interleaving with MoPS is next shown to allow interleaves with pseudo-Golden-Angle variants, and be more compatible with DISPEL against irrational and nonperiodic rotation angles, including the Golden-Angle-derived rotations. In the in vivo data, the proposed method showed no statistical difference in the systolic performance, while diastolic parameters sensitive to the cine's temporal resolution were statistically significant (P cine). We demonstrate a high-temporal resolution cine-CMR using DISPEL and MoPS, whose streaking artifact was separated from physiologic motion. © 2017 American Association of Physicists

Tomato Spotted Wilt Virus NSs Protein Supports Infection and Systemic Movement of a Potyvirus and Is a Symptom Determinant.

Science.gov (United States)

Garcia-Ruiz, Hernan; Gabriel Peralta, Sergio M; Harte-Maxwell, Patricia A

2018-03-14

Plant viruses are inducers and targets of antiviral RNA silencing. To condition susceptibility, most plant viruses encode silencing suppressor proteins that interfere with antiviral RNA silencing. The NSs protein is an RNA silencing suppressor in orthotospoviruses, such as the tomato spotted wilt virus (TSWV). The mechanism of RNA silencing suppression by NSs and its role in virus infection and movement are poorly understood. Here, we cloned and tagged TSWV NSs and expressed it from a GFP-tagged turnip mosaic virus (TuMV-GFP) carrying either a wild-type or suppressor-deficient (AS9) helper component proteinase (HC-Pro). When expressed in cis, NSs restored pathogenicity and promoted systemic infection of suppressor-deficient TuMV-AS9-GFP in Nicotiana benthamiana and Arabidopsis thaliana . Inactivating mutations were introduced in NSs RNA-binding domain one. A genetic analysis with active and suppressor-deficient NSs, in combination with wild-type and mutant plants lacking essential components of the RNA silencing machinery, showed that the NSs insert is stable when expressed from a potyvirus. NSs can functionally replace potyviral HC-Pro, condition virus susceptibility, and promote systemic infection and symptom development by suppressing antiviral RNA silencing through a mechanism that partially overlaps that of potyviral HC-Pro. The results presented provide new insight into the mechanism of silencing suppression by NSs and its effect on virus infection.

A potyvirus-based gene vector allows producing active human S-COMT and animal GFP, but not human sorcin, in vector-infected plants.

Science.gov (United States)

Kelloniemi, Jani; Mäkinen, Kristiina; Valkonen, Jari P T

2006-05-01

Potato virus A (PVA), a potyvirus with a (+)ssRNA genome translated to a large polyprotein, was engineered and used as a gene vector for expression of heterologous proteins in plants. Foreign genes including jellyfish GFP (Aequorea victoria) encoding the green fluorescent protein (GFP, 27 kDa) and the genes of human origin (Homo sapiens) encoding a soluble resistance-related calcium-binding protein (sorcin, 22 kDa) and the catechol-O-methyltransferase (S-COMT; 25 kDa) were cloned between the cistrons for the viral replicase and coat protein (CP). The inserts caused no adverse effects on viral infectivity and virulence, and the inserted sequences remained intact in progeny viruses in the systemically infected leaves. The heterologous proteins were released from the viral polyprotein following cleavage by the main viral proteinase, NIa, at engineered proteolytic processing sites flanking the insert. Active GFP, as indicated by green fluorescence, and S-COMT with high levels of enzymatic activity were produced. In contrast, no sorcin was detected despite the expected equimolar amounts of the foreign and viral proteins being expressed as a polyprotein. These data reveal inherent differences between heterologous proteins in their suitability for production in plants.

Aluminum-coated optical fibers as efficient infrared timing fiducial photocathodes for synchronizing x-ray streak cameras

International Nuclear Information System (INIS)

Koch, J.A.; MacGowan, B.J.

1991-01-01

The timing fiducial system at the Nova Two-Beam Facility allows time-resolved x-ray and optical streak camera data from laser-produced plasmas to be synchronized to within 30 ps. In this system, an Al-coated optical fiber is inserted into an aperture in the cathode plate of each streak camera. The coating acts as a photocathode for a low-energy pulse of 1ω (λ = 1.054 μm) light which is synchronized to the main Nova beam. The use of the fundamental (1ω) for this fiducial pulse has been found to offer significant advantages over the use of the 2ω second harmonic (λ = 0.53 μm). These advantages include brighter signals, greater reliability, and a higher relative damage threshold, allowing routine use without fiber replacement. The operation of the system is described, and experimental data and interpretations are discussed which suggest that the electron production in the Al film is due to thermionic emission. The results of detailed numerical simulations of the relevant thermal processes, undertaken to model the response of the coated fiber to 1ω laser pulses, are also presented, which give qualitative agreement with experimental data. Quantitative discrepancies between the modeling results and the experimental data are discussed, and suggestions for further research are given

A new approach for weed control in a cucurbit field employing an attenuated potyvirus-vector for herbicide resistance.

Science.gov (United States)

Shiboleth, Y M; Arazi, T; Wang, Y; Gal-On, A

2001-12-14

Expression of bar, a phosphinothricin acetyltransferase, in plant tissues, leads to resistance of these plants to glufosinate ammonium based herbicides. We have created a bar expressing, attenuated zucchini yellow mosaic potyvirus-vector, AGII-Bar, to enable herbicide use in cucurbit fields. The parental vector, ZYMV-AGII, has been rendered environmentally safe by both disease-symptom attenuation and aphid-assisted virus transmission abolishment. The recombinant AGII-Bar virus-encoding cDNA, when inoculated on diverse cucurbits was highly infectious, accumulated to similar levels as AGII, and elicited attenuated AGII-like symptoms. Potted cucurbits inoculated with AGII-Bar became herbicide resistant about a week post-inoculation. Herbicide resistance was sustained in squash over a period of at least 26 days and for at least 60 days in cucumber grown in a net-house under commercial conditions. To test the applicability of AGII-Bar use in a weed-infested field, a controlled experiment including more than 450 plants inoculated with this construct, was performed. Different dosages of glufosinate ammonium were sprayed, 2 weeks after planting, on the foliage of melons, cucumbers, squash, and watermelons. AGII-Bar provided protection to all inoculated plants, of every variety tested, at each dosage applied, including the highest doses that totally eradicated weeds. This study demonstrates that AGII-Bar can be utilized to facilitate weed control in cucurbits and exemplifies the practical potential of attenuated virus-vector use in agriculture.

Binding constants of Southern rice black-streaked dwarf virus Coat Protein with ferulic acid derivatives

Directory of Open Access Journals (Sweden)

Longlu Ran

2018-04-01

Full Text Available The data present binding constants between ferulic acid derivatives and the Coat Protein (P10 by fluorescence titration in this article, which is hosted in the research article entitled “Interaction Research on an Antiviral Molecule that Targets the Coat Protein of Southern rice black-streaked dwarf virus’’ (Ran et al., 2017 [1]. The data include fluorescence quenching spectrum, Stern–Volmer quenching constants, and binding parameters. In this article, a more comprehensive data interpretation and analysis is explained.

Large-grazing-angle, multi-image Kirkpatrick-Baez microscope as the front end to a high-resolution streak camera for OMEGA

International Nuclear Information System (INIS)

Gotchev, O.V.; Hayes, L.J.; Jaanimagi, P.A.; Knauer, J.P.; Marshall, F.J.; Meyerhofer, D.D.

2003-01-01

A high-resolution x-ray microscope with a large grazing angle has been developed, characterized, and fielded at the Laboratory for Laser Energetics. It increases the sensitivity and spatial resolution in planar direct-drive hydrodynamic stability experiments, relevant to inertial confinement fusion research. It has been designed to work as the optical front end of the PJX - a high-current, high-dynamic-range x-ray streak camera. Optical design optimization, results from numerical ray tracing, mirror-coating choice, and characterization have been described previously [O. V. Gotchev, et al., Rev. Sci. Instrum. 74, 2178 (2003)]. This work highlights the optics' unique mechanical design and flexibility and considers certain applications that benefit from it. Characterization of the microscope's resolution in terms of its modulation transfer function over the field of view is shown. Recent results from hydrodynamic stability experiments, diagnosed with the optic and the PJX, are provided to confirm the microscope's advantages as a high-resolution, high-throughput x-ray optical front end for streaked imaging

Lasers and laser applications. Imaging implosion dynamics: The x-ray pinhole/streak camera

International Nuclear Information System (INIS)

Attwood, D.T.

1976-01-01

A Livermore-developed x-ray-sensitive streak camera was combined with a unique x-ray pinhole camera to make dynamic photographs of laser-irradiated fusion target implosions. These photographs show x radiation emitted from the imploding shell during its 100-ps implosion; they are the first continuous observations of an imploding laser-driven fusion capsule. The diagnostic system has a time resolution of 15 ps and a spatial resolution of about 6 μm. Results agree very well with those predicted by our LASNEX calculations, confirming that the essential physics are correctly described in the code and providing further confidence in the soundness of this approach to inertial confinement fusion

A sampling ultra-high-speed streak camera based on the use of a unique photomultiplier

International Nuclear Information System (INIS)

Marode, Emmanuel

An apparatus reproducing the ''streak'' mode of a high-speed camera is proposed for the case of a slit AB whose variations in luminosity are repetitive. A photomultiplier, analysing the object AB point by point, and a still camera, photographing a slit fixed on the oscilloscope screen parallel to the sweep direction are placed on a mobile platform P. The movement of P assures a time-resolved analysis of AB. The resolution is of the order of 2.10 -9 s, and can be improved [fr

Relationship between the shoot characteristics and plant resistance to vascular-streak dieback on cocoa

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Agung Wahyu Soesilo

2014-12-01

Full Text Available Vascular-streak dieback (Oncobasidium theobromae is a serious disease on cocoa damaging the vegetative tissue especially on the branches and leaves. This research was aimed to identify the relationship between characteristics of sprouting ability and VSD resistance to confirm the response of cocoa to pruning treatment on VSD control and developing criteria for selection. Trial was carried out at Kaliwining Experimental Station of ICCRI, a VSD-endemic area by using 668 plants of hybrid populayion which were derivated from intercrossing among seven clones performing different response to VSD. The resistance was evaluated by scoring the plant damage with the scale of 0-6 on drought season in the year of 2009 and 2011. The characteristics of sprouting ability was assessed by recording the pruned trees for the variables of the number of re-growth shoot, shoot height, number of new shoot per pruned branches, shoot diameter and number of leaves per shoot. It was analyzed that the variables of the number of shoot per pruned branches, shoot diameter, shoot height and number of leaves per shoot were not significantly correlated to the score of VSD damage. Grouping of the resistance also performed similar results whereas mean of the sprouting variables were not different among group but the percentage of sprouted branches tend to be higher with the higher of the resistance (lower score. This result confirmed any mechanism of tolerance on VSD resistance by accelerating shoot rejuvenation on resistant plant. Key words : vascular-streak diaback, cocoa, resistance, characteristics of sprouting

Black leaf streak disease affects starch metabolism in banana fruit.

Science.gov (United States)

Saraiva, Lorenzo de Amorim; Castelan, Florence Polegato; Shitakubo, Renata; Hassimotto, Neuza Mariko Aymoto; Purgatto, Eduardo; Chillet, Marc; Cordenunsi, Beatriz Rosana

2013-06-12

Black leaf streak disease (BLSD), also known as black sigatoka, represents the main foliar disease in Brazilian banana plantations. In addition to photosynthetic leaf area losses and yield losses, this disease causes an alteration in the pre- and postharvest behavior of the fruit. The aim of this work was to investigate the starch metabolism of fruits during fruit ripening from plants infected with BLSD by evaluating carbohydrate content (i.e., starch, soluble sugars, oligosaccharides, amylose), phenolic compound content, phytohormones, enzymatic activities (i.e., starch phosphorylases, α- and β-amylase), and starch granules. The results indicated that the starch metabolism in banana fruit ripening is affected by BLSD infection. Fruit from infested plots contained unusual amounts of soluble sugars in the green stage and smaller starch granules and showed a different pattern of superficial degradation. Enzymatic activities linked to starch degradation were also altered by the disease. Moreover, the levels of indole-acetic acid and phenolic compounds indicated an advanced fruit physiological age for fruits from infested plots.

Efecto del acibenzolar-s-metil sobre el desarrollo de la virosis causada por potyvirus en tomate de árbol

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Mejía A. Diana Marcela

2009-04-01

Full Text Available

El principal limitante del cultivo de tomate de árbol en Colombia es el ataque de virus, el cual reduce la producción y calidad de la fruta. En condiciones de invernadero se evaluó el efecto del inductor de resistencia Acibenzolar-S-metil- ASM (Boost® sobre la incidencia y severidad de la virosis en plantas inoculadas con extracto de hojas naturalmente infectadas con virus, mediante aplicación foliar de 0,08% de producto comercial por planta cada 20 días. La incidencia de la virosis se redujo en 50% cuando el inductor se aplicó antes de la inoculación con el virus, seguido de dos aplicaciones adicionales de ASM, comparado con 100% de incidencia en las plantas inoculadas solo con el extracto de plantas infectadas con el virus, tendencia encontrada también en la curva de desarrollo de la enfermedad. Se observó un retraso de 7 días en la aparición de síntomas cuando se aplicó el inductor antes de la inoculación así como se observó una reducción significativa en el grado de severidad de la enfermedad. El potyvirus fue detectado mediante la prueba ELISA; sin embargo, no se encontraron diferencias estadísticas significativas en su concentración entre los diferentes tratamientos.

Loop-mediated Isothermal Amplification Assay to Rapidly Detect Wheat Streak Mosaic Virus in Quarantined Plants

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Siwon Lee

2015-12-01

Full Text Available We developed a loop-mediated isothermal amplification (LAMP method to rapidly diagnose Wheat streak mosaic virus (WSMV during quarantine inspections of imported wheat, corn, oats, and millet. The LAMP method was developed as a plant quarantine inspection method for the first time, and its simplicity, quickness, specificity and sensitivity were verified compared to current reverse transcription-polymerase chain reaction (RT-PCR and nested PCR quarantine methods. We were able to quickly screen for WSMV at quarantine sites with many test samples; thus, this method is expected to contribute to plant quarantine inspections.

Comparative analysis of virus-derived small RNAs within cassava (Manihot esculenta Crantz) infected with cassava brown streak viruses.

Science.gov (United States)

Ogwok, Emmanuel; Ilyas, Muhammad; Alicai, Titus; Rey, Marie E C; Taylor, Nigel J

2016-04-02

Infection of plant cells by viral pathogens triggers RNA silencing, an innate antiviral defense mechanism. In response to infection, small RNAs (sRNAs) are produced that associate with Argonaute (AGO)-containing silencing complexes which act to inactivate viral genomes by posttranscriptional gene silencing (PTGS). Deep sequencing was used to compare virus-derived small RNAs (vsRNAs) in cassava genotypes NASE 3, TME 204 and 60444 infected with the positive sense single-stranded RNA (+ssRNA) viruses cassava brown streak virus (CBSV) and Ugandan cassava brown streak virus (UCBSV), the causal agents of cassava brown streak disease (CBSD). An abundance of 21-24nt vsRNAs was detected and mapped, covering the entire CBSV and UCBSV genomes. The 21nt vsRNAs were most predominant, followed by the 22 nt class with a slight bias toward sense compared to antisense polarity, and a bias for adenine and uracil bases present at the 5'-terminus. Distribution and frequency of vsRNAs differed between cassava genotypes and viral genomes. In susceptible genotypes TME 204 and 60444, CBSV-derived sRNAs were seen in greater abundance than UCBSV-derived sRNAs. NASE 3, known to be resistant to UCBSV, accumulated negligible UCBSV-derived sRNAs but high populations of CBSV-derived sRNAs. Transcript levels of cassava homologues of AGO2, DCL2 and DCL4, which are central to the gene-silencing complex, were found to be differentially regulated in CBSV- and UCBSV-infected plants across genotypes, suggesting these proteins play a role in antiviral defense. Irrespective of genotype or viral pathogen, maximum populations of vsRNAs mapped to the cytoplasmic inclusion, P1 and P3 protein-encoding regions. Our results indicate disparity between CBSV and UCBSV host-virus interaction mechanisms, and provide insight into the role of virus-induced gene silencing as a mechanism of resistance to CBSD. Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Molecular insights into Cassava brown streak virus susceptibility and resistance by profiling of the early host response

OpenAIRE

Anjanappa, Ravi B; Mehta, Devang; Okoniewski, Michal J; Szabelska-Berȩsewicz, Alicja; Gruissem, Wilhelm; Vanderschuren, Hervé

2018-01-01

Cassava brown streak viruses (CBSVs) are responsible for significant cassava yield losses in eastern sub-Saharan Africa. To study the possible mechanisms of plant resistance to CBSVs we inoculated CBSV-susceptible and -resistant cassava varieties with a mixed infection of CBSVs using top-cleft grafting. Transcriptome profiling of the two cassava varieties was performed at the earliest time-point of full infection (28 days after grafting) in the susceptible scions. The expression of genes enco...

Towards jitter free synchronization of synchroscan streak cameras by noisy periodic laser pulses

International Nuclear Information System (INIS)

Cunin, B.; Heisel, F.; Miehe, J.A.

1991-01-01

In connection with the parameters characterizing the phase noise in cw mode-locked lasers and under the employ of streak cameras operated by sinewave deflection, the timing capabilities of the measuring system for two commonly used synchronization techniques are discussed by stochastic description. Especially, the power spectrum of the sweep signal versus the laser phase noise is examined in detail. The theoretical results are used to interpret experimental observations recorded by means of actively and passively mode-locked lasers. One of the interesting applications of synchroscan operations to metrology is the determination of short-term instabilities of the oscillator on a time scale near to the period. (author) 12 refs.; 3 figs

Large-Grazing-Angle, Multi-Image Kirkpatrick-Baez Microscope as the Front End to a High-Resolution Streak Camera for OMEGA

International Nuclear Information System (INIS)

Gotchev, O.V.; Hayes, L.J.; Jaanimagi, P.A.; Knauer, J.P.; Marshall, F.J.; Meyerhofer, D. D.

2003-01-01

(B204)A new, high-resolution x-ray microscope with a large grazing angle has been developed, characterized, and fielded at the Laboratory for Laser Energetics. It increases the sensitivity and spatial resolution in planar direct-drive hydrodynamic stability experiments, relevant to inertial confinement fusion (ICF) research. It has been designed to work as the optical front end of the PJX-a high-current, high-dynamic-range x-ray streak camera. Optical design optimization, results from numerical ray tracing, mirror-coating choice, and characterization have been described previously [O. V. Gotchev, et al./Rev. Sci. Instrum. 74, 2178 (2003)]. This work highlights the optics' unique mechanical design and flexibility and considers certain applications that benefit from it. Characterization of the microscope's resolution in terms of its modulation transfer function (MTF) over the field of view is shown. Recent results from hydrodynamic stability experiments, diagnosed with the optic and the PJX, are provided to confirm the microscope's advantages as a high-resolution, high-throughput x-ray optical front end for streaked imaging

Transcriptional changes of rice in response to rice black-streaked dwarf virus.

Science.gov (United States)

Ahmed, Mohamed M S; Ji, Wen; Wang, Muyue; Bian, Shiquan; Xu, Meng; Wang, Weiyun; Zhang, Jiangxiang; Xu, Zhihao; Yu, Meimei; Liu, Qiaoquan; Zhang, Changquan; Zhang, Honggen; Tang, Shuzhu; Gu, Minghong; Yu, Hengxiu

2017-09-10

Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, causes significant economic losses in rice production in China and many other Asian countries. Although a great deal of effort has been made to elucidate the interactions among the virus, insect vectors, host and environmental conditions, few RBSDV proteins involved in pathogenesis have been identified, and the biological basis of disease development in rice remains largely unknown. Transcriptomic information associated with the disease development in rice would be helpful to unravel the biological mechanism. To determine how the rice transcriptome changes in response to RBSDV infection, we carried out RNA-Seq to perform a genome-wide gene expression analysis of a susceptible rice cultivar KTWYJ3. The transcriptomes of RBSDV-infected samples were compared to those of RBSDV-free (healthy) at two time points (time points are represented by group I and II). The results derived from the differential expression analysis in RBSDV-infected libraries vs. healthy ones in group I revealed that 102 out of a total of 281 significant differentially expressed genes (DEGs) were up-regulated and 179 DEGs were down-regulated. Of the 2592 identified DEGs in group II, 1588 DEGs were up-regulated and 1004 DEGs were down-regulated. A total of 66 DEGs were commonly identified in both groups. Of these 66 DEGs, expression patterns for 36 DEGs were similar in both groups. Our analysis demonstrated that some genes related to disease defense and stress resistance were up-regulated while genes associated with chloroplast were down-regulated in response to RBSDV infection. In addition, some genes associated with plant-height were differentially expressed. This result indicates those genes might be involved in dwarf symptoms caused by RBSDV. Taken together, our results provide a genome-wide transcriptome analysis for rice plants in response to RBSDV infection which may contribute to the

Clonagem e purificação de fragmento da proteína capsidial de Banana streak OL virus Cloning and purification of Banana streak OL virus coat protein fragment

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Ricardo Lombardi

2010-08-01

Full Text Available O objetivo deste trabalho foi clonar e induzir a expressão de fragmento da proteína capsidial de Banana streak OL virus (BSOLV-CP em Escherichia coli, bem como purificar a proteína recombinante obtida. Empregou-se um par de iniciadores específicos para amplificar, em PCR, um fragmento de aproximadamente 390 pb, da região codificadora da porção central da BSOLV-CP. O fragmento obtido foi clonado em vetor pGEM-T Easy, subclonado em vetor pQE-30 e transformado em células de E. coli M15 (pREP4 por choque térmico. A expressão da proteína foi induzida por tiogalactopiranosídeo de isopropila (IPTG, e a proteína recombinante BSOLV-rcCP de 14 kDa foi detectada em Western blot e Dot blot. A expressão da proteína BSOLV-rcCP abre novas possibilidades para a obtenção de antígenos para a produção de antissoros contra o BSOLV.The objective of this work was to clone and to induce the expression of a fragment of Banana streak OL virus coat protein (BSOLV-CP in Escherichia coli, as well as to purify the obtained recombinant protein. Two specific primers were used for the PCR-amplification of approximately 390-bp fragment of the codifying region of the BSOLV-CP central portion. The obtained fragment was cloned in pGEM-T Easy vector, subcloned in pQE-30 expression vector and transformed into competent E. coli M15 (pREP4 cells by heat shock. The protein expression was induced by isopropyl thiogalactopyranoside (IPTG and the 14-kDa BSOLV-rcCP recombinant protein was detected in Western and Dot blotting. The expression of the BSOLV-rcCP protein enables new approaches to the obtention of antigens for the antisera production against BSOLV.

Fiber scintillator/streak camera detector for burn history measurement in inertial confinement fusion experiment

International Nuclear Information System (INIS)

Miyanaga, N.; Ohba, N.; Fujimoto, K.

1997-01-01

To measure the burn history in an inertial confinement fusion experiment, we have developed a new neutron detector based on plastic scintillation fibers. Twenty-five fiber scintillators were arranged in a geometry compensation configuration by which the time-of-flight difference of the neutrons is compensated by the transit time difference of light passing through the fibers. Each fiber scintillator is spliced individually to an ultraviolet optical fiber that is coupled to a streak camera. We have demonstrated a significant improvement of sensitivity compared with the usual bulk scintillator coupled to a bundle of the same ultraviolet fibers. copyright 1997 American Institute of Physics

Avoiding acidic region streaking in two-dimensional gel electrophoresis: case study with two bacterial whole cell protein extracts.

Science.gov (United States)

Roy, Arnab; Varshney, Umesh; Pal, Debnath

2014-09-01

Acidic region streaking (ARS) is one of the lacunae in two-dimensional gel electrophoresis (2DE) of bacterial proteome. This streaking is primarily caused by nucleic acid (NuA) contamination and poses major problem in the downstream processes like image analysis and protein identification. Although cleanup and nuclease digestion are practiced as remedial options, these strategies may incur loss in protein recovery and perform incomplete removal of NuA. As a result, ARS has remained a common observation across publications, including the recent ones. In this work, we demonstrate how ultrasound wave can be used to shear NuA in plain ice-cooled water, facilitating the elimination of ARS in the 2DE gels without the need for any additional sample cleanup tasks. In combination with a suitable buffer recipe, IEF program and frequent paper-wick changing approach, we are able to reproducibly demonstrate the production of clean 2DE gels with improved protein recovery and negligible or no ARS. We illustrate our procedure using whole cell protein extracts from two diverse organisms, Escherichia coli and Mycobacterium smegmatis. Our designed protocols are straightforward and expected to provide good 2DE gels without ARS, with comparable times and significantly lower cost.

Isolation and characterization of the mating type locus of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana

NARCIS (Netherlands)

Conde, L.; Waalwijk, C.; Canto-Canché, B.B.; Kema, G.H.J.; Crous, P.W.; James, A.C.; Abeln, E.C.A.

2007-01-01

Idiomorphs mat1-1 and mat1-2 from Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana, were isolated. Degenerate oligos were used to amplify the HMG box of the mat1-2 idiomorph from M. fijiensis, showing homology with the HMG box of Mycosphaerella graminicola. Using a

ERK inhibition promotes neuroectodermal precursor commitment by blocking self-renewal and primitive streak formation of the epiblast.

Science.gov (United States)

Yu, Yang; Wang, Xiaoxiao; Zhang, Xiaoxin; Zhai, Yanhua; Lu, Xukun; Ma, Haixia; Zhu, Kai; Zhao, Tongbiao; Jiao, Jianwei; Zhao, Zhen-Ao; Li, Lei

2018-01-05

Pluripotent stem cells hold great promise for regenerative medicine. However, before clinical application, reproducible protocols for pluripotent stem cell differentiation should be established. Extracellular signal-regulated protein kinase (ERK) signaling plays a central role for the self-renewal of epiblast stem cells (EpiSCs), but its role for subsequent germ layer differentiation is still ambiguous. We proposed that ERK could modulate differentiation of the epiblast. PD0325901 was used to inhibit ERK activation during the differentiation of embryonic stem cells and EpiSCs. Immunofluorescence, western blot analysis, real-time PCR and flow cytometry were used to detect germ layer markers and pathway activation. We demonstrate that the ERK phosphorylation level is lower in neuroectoderm of mouse E7.5 embryos than that in the primitive streak. ERK inhibition results in neural lineage commitment of epiblast. Mechanistically, PD0325901 abrogates the expression of primitive streak markers by β-catenin retention in the cytoplasm, and inhibits the expression of OCT4 and NANOG during EpiSC differentiation. Thus, EpiSCs differentiate into neuroectodermal lineage efficiently under PD0325901 treatment. These results suggest that neuroectoderm differentiation does not require extrinsic signals, supporting the default differentiation of neural lineage. We report that a single ERK inhibitor, PD0325901, can specify epiblasts and EpiSCs into neural-like cells, providing an efficient strategy for neural differentiation.

Development of VNTR Markers to Assess Genetic Diversity of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease in Bananas (Musa spp.)

Science.gov (United States)

Mycosphaerella fijiensis is the causal agent of black leaf streak (BLS) disease in bananas. This pathogen threatens global banana production as the main export cultivars are highly susceptible. As a consequence, commercial banana plantations must be protected chemically with fungicides; up to 40 app...

Effective data-domain noise and streak reduction for X-ray CT

Energy Technology Data Exchange (ETDEWEB)

Yang, Zhi; Zamyatin, Alexander A. [Toshiba Medical Research Institute USA, Inc., Vernon Hills, IL (United States); Akino, Naruomi [Toshiba Medical System Corporation, Tokyo (Japan)

2011-07-01

Streaks and noise caused by photon starvation can seriously impair the diagnostic value of the CT imaging. Existing processing methods often have several parameters to tune. The parameters can be ad hoc to the data sets. Iterative methods can achieve better results, however, at the cost of more hardware resources or longer processing time. This paper reports a new scheme of adaptive Gaussian filtering, which is based on the diffusion-derived scale-space concept. In scale-space view, filtering by Gaussians of different sizes is similar to decompose the data into a sequence of scales. The scale measure, which is the variance of the filter, should be linearly related to the noise standard deviation instead of the variance of the noise. This is a fundamental deviation in the way of using filters. The new filter has only one parameter that remains stable once tuned. Singlepass processing can usually reach the desired results. (orig.)

Electron streaking and dissociation in laser-assisted photoionization of molecular hydrogen

International Nuclear Information System (INIS)

Palacios, Alicia; González-Castrillo, Alberto; Martín, Fernando

2014-01-01

We report ab initio calculations on laser-assisted photoionization of the hydrogen molecule in the energy region where autoionization from doubly excited states is expected to occur. We use a UV-pump/IR-probe scheme in which an isolated attosecond UV pulse and a 750 nm IR pulse are combined. The IR pulse has a relatively low intensity (10 12 W cm −2 ), which allows us to perform a perturbative analysis of the calculated ionization probabilities differential in either electron or nuclear energy or both. We show that, for dissociative ionization, the electron energy distributions as a function of time delay exhibit unusual streaking patterns that are due to the presence of autoionizing states. These patterns significantly differ from the standard ones observed in direct single ionization of atoms and molecules. We also show that, by using such a pump–probe scheme, one can suppress autoionization from doubly excited states for time delays between 0 and 4 fs. (paper)

Deflection system of a high-speed streak camera in the form of a delay line

International Nuclear Information System (INIS)

Korzhenevich, I.M.; Fel'dman, G.G.

1993-01-01

This paper presents an analysis of the operation of a meander deflection system, well-known in oscillography, when it is used to scan the image in a streak-camera tube. Effects that are specific to high-speed photography are considered. It is shown that such a deflection system imposes reduced requirements both on the steepness and on the duration of the linear leading edges of the pulses of the spark gaps that generate the sweep voltage. An example of the design of a meander deflection system whose sensitivity is a factor of two higher than for a conventional system is considered. 5 refs., 3 figs

Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp)

NARCIS (Netherlands)

Garcia, S.A.L.; Lee, van der T.A.J.; Ferreira, C.F.; Lintel Hekkert, te B.; Zapater, M.F.; Goodwin, S.B.; Guzmán, M.; Kema, G.H.J.; Souza, M.T.

2010-01-01

ABSTRACT. We searched the genome of Mycosphaerella fijiensis for molecular markers that would allow population genetics analysis of this plant pathogen. M. fijiensis, the causal agent of banana leaf streak disease, also known as black Sigatoka, is the most devastating pathogen attacking bananas

Molecular, serological and biological variation among chickpea chlorotic stunt virus isolates from five countries of North Africa and West Asia.

Science.gov (United States)

Abraham, A D; Menzel, W; Varrelmann, M; Vetten, H Josef

2009-01-01

Chickpea chlorotic stunt virus (CpCSV), a proposed new member of the genus Polerovirus (family Luteoviridae), has been reported only from Ethiopia. In attempts to determine the geographical distribution and variability of CpCSV, a pair of degenerate primers derived from conserved domains of the luteovirus coat protein (CP) gene was used for RT-PCR analysis of various legume samples originating from five countries and containing unidentified luteoviruses. Sequencing of the amplicons provided evidence for the occurrence of CpCSV also in Egypt, Morocco, Sudan, and Syria. Phylogenetic analysis of the CP nucleotide sequences of 18 samples from the five countries revealed the existence of two geographic groups of CpCSV isolates differing in CP sequences by 8-10%. Group I included isolates from Ethiopia and Sudan, while group II comprised those from Egypt, Morocco and Syria. For distinguishing these two groups, a simple RFLP test using HindIII and/or PvuII for cleavage of CP-gene-derived PCR products was developed. In ELISA and immunoelectron microscopy, however, isolates from these two groups could not be distinguished with rabbit antisera raised against a group-I isolate from Ethiopia (CpCSV-Eth) and a group-II isolate from Syria (CpCSV-Sy). Since none of the ten monoclonal antibodies (MAbs) that had been produced earlier against CpCSV-Eth reacted with group-II isolates, further MAbs were produced. Of the seven MAbs raised against CpCSV-Sy, two reacted only with CpCSV-Sy and two others with both CpCSV-Sy and -Eth. This indicated that there are group I- and II-specific and common (species-specific) epitopes on the CpCSV CP and that the corresponding MAbs are suitable for specific detection and discrimination of CpCSV isolates. Moreover, CpCSV-Sy (group II) caused more severe stunting and yellowing in faba bean than CpCSV-Eth (group I). In conclusion, our data indicate the existence of a geographically associated variation in the molecular, serological and presumably

Effectiveness of several dosage formula of oil and nano emulsion of citronella against vascular streak dieback (VSD) disease on cocoa

Science.gov (United States)

Noveriza, R.; Trisno, J.; Rahma, H.; Yuliani, S.; Reflin; Martinius

2018-02-01

The disease of Vascular streak dieback (VSD) is a deadly disease of cocoa plants, because it attacks the vascular tissue of cocoa at growing point of the plant. In West Sumatra the disease was first reported in 2015 with an incidence of disease range 58.82% - 100% and an intensity of disease range 24.29% - 44.7%. The purpose of this study was to examine the effectiveness of dosage application of oil formula and nano emulsion of citronella formula against Vascular streak dieback (VSD) disease on cocoa plants in West Sumatra (in Padang Pariaman District and Limapuluh Kota District). The results showed that the percentage of VSD disease attacks in both testing sites was 100%. The oil and nano emulsion of citronella formulas can reduce the intensity of VSD disease on cocoa plants in West Sumatra, particularly in Padang Pariaman District and Limapuluh Kota District. The reduction of VSD intensity in Padang Pariaman district ranged from 8.32 to 21.13%; while in Limapuluh Kota district ranged from 4.33 to 11.80%. The nano emulsion of citronella formulation is effective to suppress the intensity of VSD disease on cocoa plants at doses 0.1% (≥ 30% of effectiveness level).

Variable Number of Tandem Repeat Markers in the Genome Sequence of Mycosphaerella Fijiensis, the Causal Agent of Black Leaf Streak Disease of Banana (Musa spp.)

Science.gov (United States)

Mycosphaerella fijiensis, the causal agent of banana leaf streak disease (commonly known as black Sigatoka), is the most devastating pathogen attacking bananas (Musa spp). Recently the whole genome sequence of M. fijiensis became available. This sequence was screened for the presence of Variable Num...

Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene.

Directory of Open Access Journals (Sweden)

Raul A Cernadas

2014-02-01

Full Text Available Bacterial leaf streak of rice, caused by Xanthomonas oryzae pv. oryzicola (Xoc is an increasingly important yield constraint in this staple crop. A mesophyll colonizer, Xoc differs from X. oryzae pv. oryzae (Xoo, which invades xylem to cause bacterial blight of rice. Both produce multiple distinct TAL effectors, type III-delivered proteins that transactivate effector-specific host genes. A TAL effector finds its target(s via a partially degenerate code whereby the modular effector amino acid sequence identifies nucleotide sequences to which the protein binds. Virulence contributions of some Xoo TAL effectors have been shown, and their relevant targets, susceptibility (S genes, identified, but the role of TAL effectors in leaf streak is uncharacterized. We used host transcript profiling to compare leaf streak to blight and to probe functions of Xoc TAL effectors. We found that Xoc and Xoo induce almost completely different host transcriptional changes. Roughly one in three genes upregulated by the pathogens is preceded by a candidate TAL effector binding element. Experimental analysis of the 44 such genes predicted to be Xoc TAL effector targets verified nearly half, and identified most others as false predictions. None of the Xoc targets is a known bacterial blight S gene. Mutational analysis revealed that Tal2g, which activates two genes, contributes to lesion expansion and bacterial exudation. Use of designer TAL effectors discriminated a sulfate transporter gene as the S gene. Across all targets, basal expression tended to be higher than genome-average, and induction moderate. Finally, machine learning applied to real vs. falsely predicted targets yielded a classifier that recalled 92% of the real targets with 88% precision, providing a tool for better target prediction in the future. Our study expands the number of known TAL effector targets, identifies a new class of S gene, and improves our ability to predict functional targeting.

Realization of an optical multi and mono-channel analyzer, associated to a streak camera. Application to metrology of picosecond low intensity luminous pulses

International Nuclear Information System (INIS)

Roth, J.M.

1985-02-01

An electronic system including a low light level television tube (Nocticon) to digitize images from streak cameras is studied and realized. Performances (sensibility, signal-to-noise ratio) are studied and compared with a multi-channel analyzer using a linear network of photodiodes. It is applied to duration and amplitude measurement of short luminous pulses [fr

Development and performance test of picosecond pulse x-ray excited streak camera system for scintillator characterization

International Nuclear Information System (INIS)

Yanagida, Takayuki; Fujimoto, Yutaka; Yoshikawa, Akira

2010-01-01

To observe time and wavelength-resolved scintillation events, picosecond pulse X-ray excited streak camera system is developed. The wavelength range spreads from vacuum ultraviolet (VUV) to near infrared region (110-900 nm) and the instrumental response function is around 80 ps. This work describes the principle of the newly developed instrument and the first performance test using BaF 2 single crystal scintillator. Core valence luminescence of BaF 2 peaking around 190 and 220 nm is clearly detected by our system, and the decay time turned out to be of 0.7 ns. These results are consistent with literature and confirm that our system properly works. (author)

Mycosphaerella fijiensis, the black leaf streak pathogen of banana: progress towards understanding pathogen biology and detection, disease development, and the challenges of control.

Science.gov (United States)

Churchill, Alice C L

2011-05-01

Banana (Musa spp.) is grown throughout the tropical and subtropical regions of the world. The fruits are a key staple food in many developing countries and a source of income for subsistence farmers. Bananas are also a major, multibillion-dollar export commodity for consumption primarily in developed countries, where few banana cultivars are grown. The fungal pathogen Mycosphaerella fijiensis causes black leaf streak disease (BLSD; aka black Sigatoka leaf spot) on the majority of edible banana cultivars grown worldwide. The fact that most of these cultivars are sterile and unsuitable for the breeding of resistant lines necessitates the extensive use of fungicides as the primary means of disease control. BLSD is a significant threat to the food security of resource-poor populations who cannot afford fungicides, and increases the environmental and health hazards where large-acreage monocultures of banana (Cavendish subgroup, AAA genome) are grown for export. Mycosphaerella fijiensis M. Morelet is a sexual, heterothallic fungus having Pseudocercospora fijiensis (M. Morelet) Deighton as the anamorph stage. It is a haploid, hemibiotrophic ascomycete within the class Dothideomycetes, order Capnodiales and family Mycosphaerellaceae. Its taxonomic placement is based on DNA phylogeny, morphological analyses and cultural characteristics. Mycosphaerella fijiensis is a leaf pathogen that causes reddish-brown streaks running parallel to the leaf veins, which aggregate to form larger, dark-brown to black compound streaks. These streaks eventually form fusiform or elliptical lesions that coalesce, form a water-soaked border with a yellow halo and, eventually, merge to cause extensive leaf necrosis. The disease does not kill the plants immediately, but weakens them by decreasing the photosynthetic capacity of leaves, causing a reduction in the quantity and quality of fruit, and inducing the premature ripening of fruit harvested from infected plants. Although Musa spp. are the

Bilateral choroidal neovascularization response to unilateral intravitreal Ranibizumab injection in a patient with angioid streaks

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Otacílio de Oliveira Maia Júnior

2013-08-01

Full Text Available Report of a 48 year-old male with bilateral decrease in vision due to choroidal neovascularization secondary to angioid streaks. Best corrected visual acuity was 20/80 in the right eye and counting fingers at 2 meters on the left eye. Patient underwent intravitreal injection of Ranibizumab (Lucentis in the eye with worse visual acuity. Fifteen days after treatment patient reported better visual acuity on the fellow eye, which was measured to be 20/25. Treatment result was evaluated with visual acuity and optical coherence tomography. The effect of ranibizumab was observed in the treated eye, but the fellow eye had complete resolution of the choroidal neovascularization complex. This result may be a response to systemic absorption of the medication.

Streak electronic camera with slow-scanning storage tube used in the field of high-speed cineradiography

International Nuclear Information System (INIS)

Marilleau, J.; Bonnet, L.; Garcin, G.; Guix, R.; Loichot, R.

The cineradiographic machine designed for measurements in the field of detonics consists of a linear accelerator associated with a braking target, a scintillator and a remote controlled electronic camera. The quantum factor of X-ray detection and the energetic efficiency of the scintillator are given. The electronic camera is built upon a deflection-converter tube (RCA C. 73 435 AJ) coupled by optical fibres to a photosensitive storage tube (TH-CSF Esicon) used in a slow-scanning process with electronic recording of the information. The different parts of the device are described. Some capabilities such as data processing numerical outputs, measurements and display are outlined. A streak cineradiogram of a typical implosion experiment is given [fr

Drivers Behind Adoption Of Cassava Brown Streak Disease Control Measures In Rwanda

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Nyirahorana

2017-11-01

Full Text Available Cassava Brown Streak Disease CBSD continues to spread and its effect on productivity remains at high level losses 50- 100 in Sub-Saharan Africa. However there is little knowledge about the drivers of adoption on CBSD control measures in Rwanda. Thus this study investigated the drivers to adopt CBSD control measures in Rwanda during 2015-2016 agricultural seasons. A total of 152 households were randomly sampled in Bugesera and Ruhango districts where cassava demonstration plots are established. A multi stage sampling techniques was used. A structured questionnaire was used to collect data from respondents. Logistic regression analysis was employed to estimate drivers behind adoption of CBSD control measures. The key factors that influenced adoption of CBSD control measures was farm size farmers experience access to credit period of plantation access to demonstration plot. In order to increase adoption of CBSD control measures policy makers and implementers in Rwanda should improve farmers social economic and Insistutional characteristics sensitize and mobilize farmers on the importance of adopting the CBSD control measures.

Evaluation of dynamic range for LLNL streak cameras using high contrast pulsed and pulse podiatry on the Nova laser system

International Nuclear Information System (INIS)

Richards, J.B.; Weiland, T.L.; Prior, J.A.

1990-01-01

This paper reports on a standard LLNL streak camera that has been used to analyze high contrast pulses on the Nova laser facility. These pulses have a plateau at their leading edge (foot) with an amplitude which is approximately 1% of the maximum pulse height. Relying on other features of the pulses and on signal multiplexing, we were able to determine how accurately the foot amplitude was being represented by the camera. Results indicate that the useful single channel dynamic range of the instrument approaches 100:1

Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.

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Feng Sun

Full Text Available Rice black-streaked dwarf virus (RBSDV, a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén. RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H2O2-dependent polymerization pathways.

Overexpression of rice black-streaked dwarf virus p7-1 in Arabidopsis results in male sterility due to non-dehiscent anthers.

Science.gov (United States)

Sun, Feng; Yuan, Xia; Xu, Qiufang; Zhou, Tong; Fan, Yongjian; Zhou, Yijun

2013-01-01

Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, is propagatively transmitted by the small brown planthopper (Laodelphax striatellus Fallén). RBSDV causes rice black-streaked dwarf and maize rough dwarf diseases, which lead to severe yield losses in crops in China. Although several RBSDV proteins have been studied in detail, the functions of the nonstructural protein P7-1 are still largely unknown. To investigate the role of the P7-1 protein in virus pathogenicity, transgenic Arabidopsis thaliana plants were generated in which the P7-1 gene was expressed under the control of the 35S promoter. The RBSDV P7-1-transgenic Arabidopsis plants (named P7-1-OE) were male sterility. Flowers and pollen from P7-1-transgenic plants were of normal size and shape, and anthers developed to the normal size but failed to dehisce. The non-dehiscent anthers observed in P7-1-OE were attributed to decreased lignin content in the anthers. Furthermore, the reactive oxygen species levels were quite low in the transgenic plants compared with the wild type. These results indicate that ectopic expression of the RBSDV P7-1 protein in A. thaliana causes male sterility, possibly through the disruption of the lignin biosynthesis and H2O2-dependent polymerization pathways.

Southern rice black-streaked dwarf virus: a white-backed planthopper transmitted fijivirus threadening rice production in Asia

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Guohui eZhou

2013-09-01

Full Text Available Southern rice black-streaked dwarf virus (SRBSDV, a nonenveloped icosahedral virus with a genome of 10 double-stranded RNA segments, is a novel species in the genus Fijivirus (family Reoviridae first recognized in 2008. Rice plants infected with this virus exhibit symptoms similar to those caused by Rice black-streaked dwarf virus. Since 2009, the virus has rapidly spread and caused serious rice losses in East and Southeast Asia. Significant progress has been made in recent years in understanding this disease, especially about the functions of the viral genes, rice–virus–insect interactions, and epidemiology and control measures. The virus can be efficiently transmitted by the white-backed planthopper (WBPH, Sogatella furcifera in a persistent circulative propagative manner but cannot be transmitted by the brown planthopper (Nilaparvata lugens and small brown planthopper (Laodelphax striatellus. Rice, maize, Chinese sorghum (Coix lacryma-jobi and other grass weeds can be infected via WBPH. However, only rice plays a major role in the virus infection cycle because of the vector's preference. In Southeast Asia, WBPH is a long-distance migratory rice pest. The disease cycle can be described as follows: SRBSDV and its WBPH vector overwinter in warm tropical or sub-tropical areas; viruliferous WBPH adults carry the virus from south to north via long-distance migration in early spring, transmit the virus to rice seedlings in the newly colonized areas, and lay eggs on the infected seedlings; the next generation of WBPHs propagate on infected seedlings, become viruliferous, disperse, and cause new disease outbreaks. Several molecular and serological methods have been developed to detect SRBSDV in plant tissues and individual insects. Control measures based on protection from WBPH, including seedbed coverage, chemical seed treatments, and chemical spraying of seedlings, have proven effective in China.

Comparing the regional epidemiology of the cassava mosaic and cassava brown streak virus pandemics in Africa.

Science.gov (United States)

Legg, J P; Jeremiah, S C; Obiero, H M; Maruthi, M N; Ndyetabula, I; Okao-Okuja, G; Bouwmeester, H; Bigirimana, S; Tata-Hangy, W; Gashaka, G; Mkamilo, G; Alicai, T; Lava Kumar, P

2011-08-01

The rapid geographical expansion of the cassava mosaic disease (CMD) pandemic, caused by cassava mosaic geminiviruses, has devastated cassava crops in 12 countries of East and Central Africa since the late 1980s. Region-level surveys have revealed a continuing pattern of annual spread westward and southward along a contiguous 'front'. More recently, outbreaks of cassava brown streak disease (CBSD) were reported from Uganda and other parts of East Africa that had been hitherto unaffected by the disease. Recent survey data reveal several significant contrasts between the regional epidemiology of these two pandemics: (i) severe CMD radiates out from an initial centre of origin, whilst CBSD seems to be spreading from independent 'hot-spots'; (ii) the severe CMD pandemic has arisen from recombination and synergy between virus species, whilst the CBSD pandemic seems to be a 'new encounter' situation between host and pathogen; (iii) CMD pandemic spread has been tightly linked with the appearance of super-abundant Bemisia tabaci whitefly vector populations, in contrast to CBSD, where outbreaks have occurred 3-12 years after whitefly population increases; (iv) the CMGs causing CMD are transmitted in a persistent manner, whilst the two cassava brown streak viruses appear to be semi-persistently transmitted; and (v) different patterns of symptom expression mean that phytosanitary measures could be implemented easily for CMD but have limited effectiveness, whereas similar measures are difficult to apply for CBSD but are potentially very effective. An important similarity between the pandemics is that the viruses occurring in pandemic-affected areas are also found elsewhere, indicating that contrary to earlier published conclusions, the viruses per se are unlikely to be the key factors driving the two pandemics. A diagrammatic representation illustrates the temporal relationship between B. tabaci abundance and changing incidences of both CMD and CBSD in the Great Lakes region

Time-resolved measurements with streaked diffraction patterns from electrons generated in laser plasma wakefield

Science.gov (United States)

He, Zhaohan; Nees, John; Hou, Bixue; Krushelnick, Karl; Thomas, Alec; Beaurepaire, Benoît; Malka, Victor; Faure, Jérôme

2013-10-01

Femtosecond bunches of electrons with relativistic to ultra-relativistic energies can be robustly produced in laser plasma wakefield accelerators (LWFA). Scaling the electron energy down to sub-relativistic and MeV level using a millijoule laser system will make such electron source a promising candidate for ultrafast electron diffraction (UED) applications due to the intrinsic short bunch duration and perfect synchronization with the optical pump. Recent results of electron diffraction from a single crystal gold foil, using LWFA electrons driven by 8-mJ, 35-fs laser pulses at 500 Hz, will be presented. The accelerated electrons were collimated with a solenoid magnetic lens. By applying a small-angle tilt to the magnetic lens, the diffraction pattern can be streaked such that the temporal evolution is separated spatially on the detector screen after propagation. The observable time window and achievable temporal resolution are studied in pump-probe measurements of photo-induced heating on the gold foil.

Effect of rosella extract on development of fatty streaks lesions in female rats

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E. R. Al-Kennany

2010-01-01

Full Text Available This research was conducted to explore the effect of rosella (Hibiscus sabdariffa on female rats on oxidative stress which induced by 0.5% H2O2. Oxidative stress has been investigated via tissue (aorta and heart malonadyaldehyde (MDA as indirect lipid peroxidation index. For atherosclerotic lesions follow up light microscopical technique has been applied. The result elucidate significant reduction in lipid profit parameters namely: low density lipoprotein (LDL-c, triglycerides, very low density lipoprotein (vLDL-c, atherogenic index and significant elevation in high density lipoprotein (HDL-c in few animals treated with H2O2 and rosella extract, parallely, this research illustrate reduction in aorta and heart MDA concentration, concomitant with significant rising in glutathione (GSH level. Histopathologically, this study revealed fatty streaks associated with infiltration of mononuclear inflammatory cells have been detected after 60 days, in animal treated with rosella revealed reduction in lipid vacuoles and proliferation in vascular smooth muscle cells (VSMcs in media toward intimal layers after 40 days from treatment.

The effect of germinated fenugreek seeds and clofibrat on blood cholesterol level and aortic fatty streak in rabbit.

Directory of Open Access Journals (Sweden)

bahram delfan

2010-03-01

Full Text Available Atherosclerosis is the excess of fat and stiffness of arteries sidewalls in which specific areas of the circulatory system are involved, causing specific signs based on the involved area, the characteristics of the lesion, and the severity of involvement. The only factor necessary to cause atherosclerosis is the high level of LDL cholesterol. Today, drugs such as lovastatin, clofibrate, and Klystramyn are applied to reduce LDL and increase HDL levels. Material and methods: The effect of fenugreek seeds without any drugs or with clofibrat on blood lipids profile and fatty streak forming were evaluated in 25 male healthy rabbits. The rabbits were divided into 5 group of 5 and received the following diets and drugs for 45 days: Group Ι, normal diet without any drugs Group Π, high cholesterol diet without any drugs Group ΙΙΙ, high cholesterol diet in addition to germinated fenugreek seeds powder (600 mg bid Group ΙV, high cholesterol diet in addition to clofibrat (50 mg bid and GroupV, high cholesterol diet in addition to clofibrat (50 mg bid and germinated fenugreek seeds powder (600 mg bid. The blood samples were collected after overnight fasting at the beginning and at the end of the test period and were estimated for lipids profile. Also autopsy and aortic cross-sectional sampling was conducted for microscopic study after the experiment. Result: The serum total cholesterol, LDL, and triglyceride levels of groups ΙΙΙ, ΙV,V increased less than those in group Π but HDL levels in groups ΙΙΙ, ΙV and V increased more than that in group Π (P<0.001. Furthermore, the intensity of fatty streak was less in group V. Conclusion: This result indicates the usefulness of fenugreek seeds in the management of hyperlipidemia and atherosclerosis (P<0.05

Development of miniaturized proximity focused streak tubes for visible light and x-ray applications. Final report and progress, April-September 1977

International Nuclear Information System (INIS)

Cuny, J.J.; Knight, A.J.

1978-02-01

Research performed to develop miniaturized proximity focused streak camera tubes (PFST) for application in the visible and the x-ray modes of operation is described. The objective of this research was to provide an engineering design and to fabricate a visible and an x-ray prototype tube to be provided to LASL for test and evaluation. Materials selection and fabrication procedures, particularly the joining of beryllium to a suitable support ring for use as the x-ray window, are described in detail. The visible and x-ray PFST's were successfully fabricated

Streaked spectrometry using multilayer x-ray-interference mirrors to investigate energy transport in laser-plasma applications

International Nuclear Information System (INIS)

Stradling, G.L.; Barbee, T.W. Jr.; Henke, B.L.; Campbell, E.M.; Mead, W.C.

1981-08-01

Transport of energy in laser-produced plasmas is scrutinized by devising spectrally and temporally identifiable characteristics in the x-ray emission history which identify the heat-front position at various times in the heating process. Measurements of the relative turn-on times of these characteristics show the rate of energy transport between various points. These measurements can in turn constrain models of energy transport phenomena. We are time-resolving spectrally distinguishable subkilovolt x-ray emissions from different layers of a disk target to examine the transport rate of energy into the target. A similar technique is used to measure the lateral expansion rate of the plasma spot. A soft x-ray streak camera with 15-psec temporal resolution is used to make the temporal measurements. Spectral discrimination of the incident signal is provided by multilayer x-ray interference mirrors

Terpene Profile, Leaf Anatomy, and Enzyme Activity of Resistant and Susceptible Cocoa Clonesto Vascular Streak Dieback Disease

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Adi Prawoto

2014-10-01

Full Text Available Vascular-streak dieback (VSD, Oncobasidium theobromae is the most prevalent disease of Theobroma cacao L. in Indonesia. This study aims to analyze resistance mechanism to VSD based on terpene profile, leaf anatomy, chitinase, and peroxidase study. Resistant clones of Sulawesi 1 and Sca 6 and susceptible clones of ICS 60 and TSH 858 were used for terpene profile, leaf anatomy analysis, chitinase, peroxides, polyphenol, lignin, and cellulose analysis. Those clones and KEE 2, KKM 22 and ICS 13 were used for peroxides analysis. For trichome study, the resistant clones of Sulawesi 1, Sca 6, KEE 2, and KKM 22, and susceptible clones of ICS 60 and TSH 858 were used. GCMS analysis showed that chromatogram pattern of resistant and susceptible groups were quite similar, but resistant clones contained 22% more components than the susceptible ones. Resistant clones contained groups of pinene, decane, myrcene, and octadecanoic acid, while those substances on usceptible clones were absent. Trichome was thicker on younger leaf, and its density on the basal was higher than that on the middle and tip leaf parts. Trichome density of resistant clone was not always thicker than that of susceptible ones. On resistant clones, stomatal density was lower and width of stomate pits was narrower, while thickness of epidermis layer and pallisade parenchym were higher. Polyphenol content of resistant clones were higher but lignin and cellulose of both groups were similar. Chitinase activity which has a role in hydrolysis of mycelia cell wall was higher on the resistant clones, but peroxides which has a role in polymeration of lignin biosynthesis was similar between both groups. It is concluded that groups of terpene pinene, decane, myrcene, and octadecanoic acid, thickness of leaf epidermis, density and width of stomata pit, and chitinase activity plays important role in cocoa resistance to VSD. Key words: Theobroma cacaoL., clone, vascular-streak dieback, resistance, leaf

Potential applications of a dual-sweep streak camera system for characterizing particle and photon beams of VUV, XUV, and x-ray FELS

Energy Technology Data Exchange (ETDEWEB)

Lumpkin, A. [Argonne National Lab., IL (United States)

1995-12-31

The success of time-resolved imaging techniques in the Characterization of particle beams and photon beams of the recent generation of L-band linac-driven or storage ring FELs in the infrared, visible, and ultraviolet wavelength regions can be extended to the VUV, XUV, and x-ray FELs. Tests and initial data have been obtained with the Hamamatsu C5680 dual-sweep streak camera system which includes a demountable photocathode (thin Au) assembly and a flange that allows windowless operation with the transport vacuum system. This system can be employed at wavelengths shorter than 100 nm and down to 1 {Angstrom}. First tests on such a system at 248-nm wavelengths have been performed oil the Argonne Wakefield Accelerator (AWA) drive laser source. A quartz window was used at the tube entrance aperture. A preliminary test using a Be window mounted on a different front flange of the streak tube to look at an x-ray bremsstrahlung source at the AWA was limited by photon statistics. This system`s limiting resolution of {sigma}{approximately}1.1 ps observed at 248 nm would increase with higher incoming photon energies to the photocathode. This effect is related to the fundamental spread in energies of the photoelectrons released from the photocathodes. Possible uses of the synchrotron radiation sources at the Advanced Photon Source and emerging short wavelength FELs to test the system will be presented.

Evaluation of dynamic range for LLNL streak cameras using high contrast pulses and pulse podiatry'' on the Nova laser system

Energy Technology Data Exchange (ETDEWEB)

Richards, J.B.; Weiland, T.L.; Prior, J.A.

1990-07-01

A standard LLNL streak camera has been used to analyze high contrast pulses on the Nova laser facility. These pulses have a plateau at their leading edge (foot) with an amplitude which is approximately 1% of the maximum pulse height. Relying on other features of the pulses and on signal multiplexing, we were able to determine how accurately the foot amplitude was being represented by the camera. Results indicate that the useful single channel dynamic range of the instrument approaches 100:1. 1 ref., 4 figs., 1 tab.

Research on the underwater target imaging based on the streak tube laser lidar

Science.gov (United States)

Cui, Zihao; Tian, Zhaoshuo; Zhang, Yanchao; Bi, Zongjie; Yang, Gang; Gu, Erdan

2018-03-01

A high frame rate streak tube imaging lidar (STIL) for real-time 3D imaging of underwater targets is presented in this paper. The system uses 532nm pulse laser as the light source, the maximum repetition rate is 120Hz, and the pulse width is 8ns. LabVIEW platform is used in the system, the system control, synchronous image acquisition, 3D data processing and display are realized through PC. 3D imaging experiment of underwater target is carried out in a flume with attenuation coefficient of 0.2, and the images of different depth and different material targets are obtained, the imaging frame rate is 100Hz, and the maximum detection depth is 31m. For an underwater target with a distance of 22m, the high resolution 3D image real-time acquisition is realized with range resolution of 1cm and space resolution of 0.3cm, the spatial relationship of the targets can be clearly identified by the image. The experimental results show that STIL has a good application prospect in underwater terrain detection, underwater search and rescue, and other fields.

Time- and wavelength-resolved luminescence evaluation of several types of scintillators using streak camera system equipped with pulsed X-ray source

Energy Technology Data Exchange (ETDEWEB)

Furuya, Yuki, E-mail: f.yuki@mail.tagen.tohoku.ac.j [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Yanagida, Takayuki; Fujimoto, Yutaka; Yokota, Yuui; Kamada, Kei [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Kawaguchi, Noriaki [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); Research and Development Division, Tokuyama., Co. Ltd., ICR-Building, Minamiyoshinari, Aoba-ku, Sendai (Japan); Ishizu, Sumito [Research and Development Division, Tokuyama., Co. Ltd., ICR-Building, Minamiyoshinari, Aoba-ku, Sendai (Japan); Uchiyama, Koro; Mori, Kuniyoshi [Hamamatsu Photonics K.K., 325-6, Sunayama-cho, Naka-ku, Hamamatsu, Shizuoka 430-8587 (Japan); Kitano, Ken [Vacuum and Optical Instruments, 2-18-18 Shimomaruko, Ota, Tokyo 146-0092 (Japan); Nikl, Martin [Institute of Physics ASCR, Cukrovarnicka 10, Prague 6, 162-53 (Czech Republic); Yoshikawa, Akira [Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577 (Japan); NICHe, Tohoku University, 6-6-10 Aoba, Aramaki, Aoba-ku, Sendai 980-8579 (Japan)

2011-04-01

To design new scintillating materials, it is very important to understand detailed information about the events, which occurred during the excitation and emission processes under the ionizing radiation excitation. We developed a streak camera system equipped with picosecond pulsed X-ray source to observe time- and wavelength-resolved scintillation events. In this report, we test the performance of this new system using several types of scintillators including bulk oxide/halide crystals, transparent ceramics, plastics and powders. For all samples, the results were consistent with those reported previously. The results demonstrated that the developed system is suitable for evaluation of the scintillation properties.

Molecular Genetic Analysis and Evolution of Segment 7 in Rice Black-Streaked Dwarf Virus in China.

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Yu Zhou

Full Text Available Rice black-streaked dwarf virus (RBSDV causes maize rough dwarf disease or rice black-streaked dwarf disease and can lead to severe yield losses in maize and rice. To analyse RBSDV evolution, codon usage bias and genetic structure were investigated in 111 maize and rice RBSDV isolates from eight geographic locations in 2013 and 2014. The linear dsRNA S7 is A+U rich, with overall codon usage biased toward codons ending with A (A3s, S7-1: 32.64%, S7-2: 29.95% or U (U3s, S7-1: 44.18%, S7-2: 46.06%. Effective number of codons (Nc values of 45.63 in S7-1 (the first open reading frame of S7 and 39.96 in S7-2 (the second open reading frame of S7 indicate low degrees of RBSDV-S7 codon usage bias, likely driven by mutational bias regardless of year, host, or geographical origin. Twelve optimal codons were detected in S7. The nucleotide diversity (π of S7 sequences in 2013 isolates (0.0307 was significantly higher than in 2014 isolates (0.0244, P = 0.0226. The nucleotide diversity (π of S7 sequences in isolates from Jinan (0.0391 was higher than that from the other seven locations (P < 0.01. Only one S7 recombinant was detected in Baoding. RBSDV isolates could be phylogenetically classified into two groups according to S7 sequences, and further classified into two subgroups. S7-1 and S7-2 were under negative and purifying selection, with respective Ka/Ks ratios of 0.0179 and 0.0537. These RBSDV populations were expanding (P < 0.01 as indicated by negative values for Tajima's D, Fu and Li's D, and Fu and Li's F. Genetic differentiation was detected in six RBSDV subpopulations (P < 0.05. Absolute Fst (0.0790 and Nm (65.12 between 2013 and 2014, absolute Fst (0.1720 and Nm (38.49 between maize and rice, and absolute Fst values of 0.0085-0.3069 and Nm values of 0.56-29.61 among these eight geographic locations revealed frequent gene flow between subpopulations. Gene flow between 2013 and 2014 was the most frequent.

Isolation and characterization of subgenomic DNAs encapsidated in 'single' T = 1 isometric particles of Maize streak virus

International Nuclear Information System (INIS)

Casado, Carolina G.; Javier Ortiz, G.; Padron, Eric; Bean, Samantha J.; McKenna, Robert; Agbandje-McKenna, Mavis; Boulton, Margaret I.

2004-01-01

'Single' T = 1 isometric particles of Maize streak virus (MSV) have been isolated from infected maize leaves. Biochemical and genetic characterizations show that these particles contain subgenomic (sg) MSV DNA encapsidated by the MSV coat protein. The largest sg DNA is 1.56 kb, slightly larger than half genome size, although sg DNAs as small as 0.2 kb were also cloned. The sg DNAs are not infectious, and they do not appear to play a role in the pathogenicity of MSV. This is the first report of sg DNAs for MSV and, to our knowledge, the first time that encapsidated sg DNAs have been characterized at the sequence level for any geminivirus. These data will assist in our investigations into the role of genomic DNA in the formation of the unique geminate capsid architecture of the Geminiviridae

Childhood Sexual Violence in Indonesia: A Systematic Review.

Science.gov (United States)

Rumble, Lauren; Febrianto, Ryan Fajar; Larasati, Melania Niken; Hamilton, Carolyn; Mathews, Ben; Dunne, Michael P

2018-01-01

There has been relatively little research into the prevalence of childhood sexual violence (CSV) as well as the risk and protective factors for CSV in low- and middle-income countries including Indonesia. Systematic searches conducted in English and Bahasa Indonesia in this review identified 594 records published between 2006 and 2016 in peer-reviewed journals and other literature including 299 Indonesian records. Fifteen studies, including nine prevalence studies, met the quality appraisal criteria developed for this review. The review found that CSV research is scarce: Only one study included nationally representative prevalence estimates. Varying definitions for CSV, survey methods, and sample characteristics limited the generalizability of the data. The available evidence points to significant risk of sexual violence affecting both girls and boys across many geographical and institutional settings. Married adolescent girls are vulnerable to sexual violence by partners in their homes. Children in schools are vulnerable to CSV by peers and adults. Victims seldom disclose incidents and rarely seek support. In addition, early childhood experiences of trauma were strongly associated with later perpetration of sexual violence and revictimization. Limited information is available about protective factors. This review synthesizes evidence about what is currently known about CSV in Indonesia and identifies the strengths and weaknesses of the existing research. A more robust evidence base regarding CSV is required to better inform policy and justify investment into prevention programs.

Ecological Fitness of Non-vector Planthopper Sogatella furcifera on Rice Plants Infected with Rice Black Streaked Dwarf Virus

Directory of Open Access Journals (Sweden)

Xiao-chan HE

2012-12-01

Full Text Available We evaluated the effects of rice black streak dwarf virus (RBSDV-infested rice plants on the ecological parameters and its relevant defensive and detoxification enzymes of white-backed planthopper (WBPH in laboratory for exploring the relationship between RBSDV and the non-vector planthopper. The results showed that nymph survival rate, female adult weight and fecundity, and egg hatchability of WBPH fed on RBSDV-infested rice plants did not markedly differ from those on healthy plants, whereas the female adult longevity and egg duration significantly shortened on diseased plants. Furthermore, significantly higher activities of defensive enzymes (dismutase, catalase and peroxidase and detoxification enzymes (acetylcholinesterase, carboxylesterase and glutathione S-transferase were found in WBPH adults fed on infected plants. Results implied that infestation by RBSDV increased the ecological fitness of non-vector planthopper population.

Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp).

Science.gov (United States)

Garcia, S A L; Van der Lee, T A J; Ferreira, C F; Te Lintel Hekkert, B; Zapater, M-F; Goodwin, S B; Guzmán, M; Kema, G H J; Souza, M T

2010-11-09

We searched the genome of Mycosphaerella fijiensis for molecular markers that would allow population genetics analysis of this plant pathogen. M. fijiensis, the causal agent of banana leaf streak disease, also known as black Sigatoka, is the most devastating pathogen attacking bananas (Musa spp). Recently, the entire genome sequence of M. fijiensis became available. We screened this database for VNTR markers. Forty-two primer pairs were selected for validation, based on repeat type and length and the number of repeat units. Five VNTR markers showing multiple alleles were validated with a reference set of isolates from different parts of the world and a population from a banana plantation in Costa Rica. Polymorphism information content values varied from 0.6414 to 0.7544 for the reference set and from 0.0400 and 0.7373 for the population set. Eighty percent of the polymorphism information content values were above 0.60, indicating that the markers are highly informative. These markers allowed robust scoring of agarose gels and proved to be useful for variability and population genetics studies. In conclusion, the strategy we developed to identify and validate VNTR markers is an efficient means to incorporate markers that can be used for fungicide resistance management and to develop breeding strategies to control banana black leaf streak disease. This is the first report of VNTR-minisatellites from the M. fijiensis genome sequence.

Characterization of a Syrian Chickpea chlorotic stunt virus strain and production of polyclonal antibodies for its detection

Directory of Open Access Journals (Sweden)

Yaseen ALNAASAN

2013-05-01

Full Text Available Reverse transcription-polymerase chain reaction analysis with two primer sets of luteoviruses was used to characterize an isolate of Chickpea chlorotic stunt virus (CpCSv, genus Polerovirus, family Luteoviridae (SC402-08 collected from Lattakia, Syria, during the 2007‒2008 chickpea growing season. Sequence analysis revealed that the coat protein gene of the isolate shared nucleotide sequence identities ranging from 97 to 98% with the CpCSv isolates from Egypt, morocco and Syria. The capsid protein was separated as a protein of approximately 20 kDa in sodium dodecyl sulphate polyacrylamide gel electrophoresis, and was visually detected by its reaction with CpCSV monoclonal antibody in Western blot. SC402-08 isolate of CpCSV was purified from faba bean-infected plants, and yielded 112–182 μg of purified virions kg-1 of infected tissue. The purified preparation was injected into a white rabbit, and an antiserum was obtained and used to detect CpCSv in infected tissues by tissue-blot immunoassay. The antiserum obtained was able to detect CpCSv by the immunoassay up to a dilution of 1:1,024,000.

Present status of some virus diseases affecting legume crops in Tunisia, and partial characterization of Chickpea chlorotic stunt virus

Directory of Open Access Journals (Sweden)

Asma NAJAR

2011-09-01

Full Text Available Field surveys were conducted in Tunisia during the 2005‒2006, 2006‒2007 and 2009‒2010 growing seasons to identify viruses which produce yellowing, reddening and/or stunting symptoms of chickpea, faba bean and pea crops. Tissue blot immunoassay (TBIA results showed that Chickpea chlorotic stunt virus (CpCSV was the most common virus, followed by Faba bean necrotic yellows virus, Bean leafroll virus and Beet western yellows virus. The coat protein (CP gene nucleotide sequence of seven CpCSV isolates collected from different regions of Tunisia was compared with sequences of five other isolates in the NCBI database. A homology tree of the CP nucleotide sequences was prepared and CpCSV isolates were grouped into two clusters. The first group contained two Tunisian CpCSV chickpea isolates collected from Bizerte and Kef; sequenced regions showed a high nucleotiode homology (95% to that of the Ethiopian and Sudanese CpCSV isolates. The second group included five Tunisian isolates: two from chickpea, two from pea and one from faba bean, which showed a high homology (96% when compared with the Moroccan, Egyptian and Syrian CpCSV isolates.

RNAi-mediated resistance to rice black-streaked dwarf virus in transgenic rice.

Science.gov (United States)

Ahmed, Mohamed M S; Bian, Shiquan; Wang, Muyue; Zhao, Jing; Zhang, Bingwei; Liu, Qiaoquan; Zhang, Changquan; Tang, Shuzhu; Gu, Minghong; Yu, Hengxiu

2017-04-01

Rice black-streaked dwarf virus (RBSDV), a member of the genus Fijivirus in the family Reoviridae, causes significant economic losses in rice production in China and many other Asian countries. Development of resistant varieties by using conventional breeding methods is limited, as germplasm with high level of resistance to RBSDV have not yet been found. One of the most promising methods to confer resistance against RBSDV is the use of RNA interference (RNAi) technology. RBSDV non-structural protein P7-2, encoded by S7-2 gene, is a potential F-box protein and involved in the plant-virus interaction through the ubiquitination pathway. P8, encoded by S8 gene, is the minor core protein that possesses potent active transcriptional repression activity. In this study, we transformed rice calli using a mini-twin T-DNA vector harboring RNAi constructs of the RBSDV genes S7-2 or S8, and obtained plants harboring the target gene constructs and the selectable marker gene, hygromycin phosphotransferase (HPT). From the offspring of these transgenic plants, we obtained selectable marker (HPT gene)-free plants. Homozygous T 5 transgenic lines which harbored either S7-2-RNAi or S8-RNAi exhibited high level resistance against RBSDV under field infection pressure from indigenous viruliferous small brown planthoppers. Thus, our results showed that RNA interference with the expression of S7-2 or S8 genes seemed an effective way to induce high level resistance in rice against RBSD disease.

Testing partonic charge symmetry at a high-energy electron collider

International Nuclear Information System (INIS)

Hobbs, T.J.; Londergan, J.T.; Murdock, D.P.; Thomas, A.W.

2011-01-01

We examine the possibility that one could measure partonic charge symmetry violation (CSV) by comparing neutrino or antineutrino production through charged-current reactions induced by electrons or positrons at a possible electron collider at the LHC. We calculate the magnitude of CSV that might be expected at such a facility. We show that this is likely to be a several percent effect, substantially larger than the typical CSV effects expected for partonic reactions.

Data and code files for co-occurrence modeling project

Data.gov (United States)

U.S. Environmental Protection Agency — Files included are original data inputs on stream fishes (fish_data_OEPA_2012.csv), water chemistry (OEPA_WATER_2012.csv), geographic data (NHD_Plus_StreamCat);...

Label-Free Quantitative Proteomic Analysis of Chitosan Oligosaccharide-Treated Rice Infected with Southern Rice Black-Streaked Dwarf Virus.

Science.gov (United States)

Yang, Anming; Yu, Lu; Chen, Zhuo; Zhang, Shanxue; Shi, Jing; Zhao, Xiaozhen; Yang, Yuanyou; Hu, Deyu; Song, Baoan

2017-05-18

Southern rice black-streaked dwarf virus (SRBSDV) has spread from thesouth of China to the north of Vietnam in the past few years and severelyinfluenced rice production. Its long incubation period and early symptoms are not evident; thus, controlling it is difficult. Chitosan oligosaccharide (COS) is a green plant immunomodulator. Early studies showed that preventing and controlling SRBSDV have a certain effect and reduce disease infection rate, but its underlying controlling and preventing mechanism is unclear. In this study, label-free proteomics was used to analyze differentially expressed proteins in rice after COS treatment. The results showed that COS can up-regulate the plant defense-related proteins and down-regulate the protein expression levels of SRBSDV. Meanwhile, quantitative real-time PCR test results showed that COS can improve defense gene expression in rice. Moreover, COS can enhance the defense enzymatic activities of peroxidase, superoxide dismutase and catalase through mitogen-activated protein kinase signaling cascade pathway, and enhance the rice disease resistance.

Assessing model characterization of single source secondary pollutant impacts using 2013 SENEX field study measurements

Data.gov (United States)

U.S. Environmental Protection Agency — The dataset consists of 4 comma-separated value (csv) text files and 3 netCDF data files. Each csv file contains the observed and CMAQ modeled gas and aerosol...

The reduction of image noise and streak artifact in the thoracic inlet during low dose and ultra-low dose thoracic CT

International Nuclear Information System (INIS)

Paul, N S; Prezelj, E; Burey, P; Menezes, R J; Blobel, J; Ursani, A; Kashani, H; Siewerdsen, J H

2010-01-01

Increased pixel noise and streak artifact reduce CT image quality and limit the potential for radiation dose reduction during CT of the thoracic inlet. We propose to quantify the pixel noise of mediastinal structures in the thoracic inlet, during low-dose (LDCT) and ultralow-dose (uLDCT) thoracic CT, and assess the utility of new software (quantum denoising system and BOOST3D) in addressing these limitations. Twelve patients had LDCT (120 kV, 25 mAs) and uLDCT (120 kV, 10 mAs) images reconstructed initially using standard mediastinal and lung filters followed by the quantum denoising system (QDS) to reduce pixel noise and BOOST3D (B3D) software to correct photon starvation noise as follows: group 1 no QDS, no B3D; group 2 B3D alone; group 3 QDS alone and group 4 both QDS and B3D. Nine regions of interest (ROIs) were replicated on mediastinal anatomy in the thoracic inlet, for each patient resulting in 3456 data points to calculate pixel noise and attenuation. QDS reduced pixel noise by 18.4% (lung images) and 15.8% (mediastinal images) at 25 mAs. B3D reduced pixel noise by ∼8% in the posterior thorax and in combination there was a 35.5% reduction in effective radiation dose (E) for LDCT (1.63-1.05 mSv) in lung images and 32.2% (1.55-1.05 mSv) in mediastinal images. The same combination produced 20.7% reduction (0.53-0.42 mSv) in E for uLDCT, for lung images and 17.3% (0.51-0.42) for mediastinal images. This quantitative analysis of image quality confirms the utility of dedicated processing software in targeting image noise and streak artifact in thoracic LDCT and uLDCT images taken in the thoracic inlet. This processing software potentiates substantial reductions in radiation dose during thoracic LDCT and uLDCT.

Analysis of preference for carbon source utilization among three strains of aromatic compounds degrading Pseudomonas.

Science.gov (United States)

Karishma, M; Trivedi, Vikas D; Choudhary, Alpa; Mhatre, Akanksha; Kambli, Pranita; Desai, Jinal; Phale, Prashant S

2015-10-01

Soil isolates Pseudomonas putida CSV86, Pseudomonas aeruginosa PP4 and Pseudomonas sp. C5pp degrade naphthalene, phthalate isomers and carbaryl, respectively. Strain CSV86 displayed a diauxic growth pattern on phenylpropanoid compounds (veratraldehyde, ferulic acid, vanillin or vanillic acid) plus glucose with a distinct second lag-phase. The glucose concentration in the medium remained constant with higher cell respiration rates on aromatics and maximum protocatechuate 3,4-dioxygenase activity in the first log-phase, which gradually decreased in the second log-phase with concomitant depletion of the glucose. In strains PP4 and C5pp, growth profile and metabolic studies suggest that glucose is utilized in the first log-phase with the repression of utilization of aromatics (phthalate or carbaryl). All three strains utilize benzoate via the catechol 'ortho' ring-cleavage pathway. On benzoate plus glucose, strain CSV86 showed preference for benzoate over glucose in contrast to strains PP4 and C5pp. Additionally, organic acids like succinate were preferred over aromatics in strains PP4 and C5pp, whereas strain CSV86 co-metabolizes them. Preferential utilization of aromatics over glucose and co-metabolism of organic acids and aromatics are found to be unique properties of P. putida CSV86 as compared with strains PP4 and C5pp and this property of strain CSV86 can be exploited for effective bioremediation. © FEMS 2015. All rights reserved.

Lucerne transient streak virus; a Recently Detected Virus Infecting Alfafa (Medicago sativa) in Central Saudi Arabia.

Science.gov (United States)

Raza, Ahmed; Al-Shahwan, Ibrahim M; Abdalla, Omer A; Al-Saleh, Mohammed A; Amer, Mahmoud A

2017-02-01

A survey was conducted to determine the status of Lucerne transient streak virus (LTSV) in three high-yielding alfalfa regions in central Saudi Arabia (Riyadh, Qassim, and Hail) during 2014. Three hundred and eight symptomatic alfalfa, and seven Sonchus oleraceus samples were collected. DAS-ELISA indicated that 59 of these samples were positive to LTSV. Two isolates of LTSV from each region were selected for molecular studies. RT-PCR confirmed the presence of LTSV in the selected samples using a specific primer pair. Percentage identity and homology tree comparisons revealed that all Saudi isolates were more closely related to each other but also closely related to the Canadian isolate-JQ782213 (97.1-97.6%) and the New Zealand isolate-U31286 (95.8-97.1%). Comparing Saudi isolates of LTSV with ten other sobemoviruses based on the coat protein gene sequences confirmed the distant relationship between them. Eleven out of fourteen plant species used in host range study were positive to LTSV. This is the first time to document that Trifolium alexandrinum , Nicotiana occidentalis , Chenopodium glaucum , and Lathyrus sativus are new host plant species for LTSV and that N. occidentalis being a good propagative host for it.

Streak-Camera Measurements with High Currents in PEP-II and Variable Optics in SPEAR3

Energy Technology Data Exchange (ETDEWEB)

Cheng, Weixeng; Fisher, Alan, a Corbett, Jeff; /SLAC

2008-06-05

A dual-axis, synchroscan streak camera was used to measure longitudinal bunch profiles in three storage rings at SLAC: the PEP-II low- and high-energy rings, and SPEAR3. At high currents, both PEP rings exhibit a transient synchronous-phase shift along the bunch train due to RF-cavity beam loading. Bunch length and profile asymmetry were measured along the train for a range of beam currents. To avoid the noise inherent in a dual-axis sweep, we accumulated single-axis synchroscan images while applying a 50-ns gate to the microchannel plate. To improve the extinction ratio, an upstream mirror pivoting at 1 kHz was synchronized with the 2kHz MCP gate to deflect light from other bunches off the photocathode. Bunch length was also measured on the HER as a function of beam energy. For SPEAR3 we measured bunch length as a function of single-bunch current for several lattices: achromatic, low-emittance and low momentum compaction. In the first two cases, resistive and reactive impedance components can be extracted from the longitudinal bunch profiles. In the low-alpha configurations, we observed natural bunch lengths approaching the camera resolution, requiring special care to remove instrumental effects, and saw evidence of periodic bursting.

Charge symmetry breaking in spin dependent parton distributions and the Bjorken sum rule

International Nuclear Information System (INIS)

Cloet, I.C.; Horsley, R.; Londergan, J.T.

2012-04-01

We present the rst determination of charge symmetry violation (CSV) in the spin-dependent parton distribution functions of the nucleon. This is done by determining the rst two Mellin moments of the spin-dependent parton distribution functions of the octet baryons from N f =2+1 lattice simulations. The results are compared with predictions from quark models of nucleon structure. We discuss the contribution of partonic spin CSV to the Bjorken sum rule, which is important because the CSV contributions represent the only partonic corrections to the Bjorken sum rule.

Charge symmetry breaking in spin dependent parton distributions and the Bjorken sum rule

Energy Technology Data Exchange (ETDEWEB)

Cloet, I.C. [Adelaide Univ, SA (Australia). CSSM, School of Chemistry and Physics; Horsley, R. [Edinburgh Univ. (United Kingdom). School of Physics and Astronomy; Londergan, J.T. [Indiana Univ., Bloomington, IN (US). Dept. of Physics and Center for Exploration of Energy and Matter] (and others)

2012-04-15

We present the rst determination of charge symmetry violation (CSV) in the spin-dependent parton distribution functions of the nucleon. This is done by determining the rst two Mellin moments of the spin-dependent parton distribution functions of the octet baryons from N{sub f}=2+1 lattice simulations. The results are compared with predictions from quark models of nucleon structure. We discuss the contribution of partonic spin CSV to the Bjorken sum rule, which is important because the CSV contributions represent the only partonic corrections to the Bjorken sum rule.

Non-noble metal vanadium phosphites with broad absorption for photocatalytic hydrogen evolution

International Nuclear Information System (INIS)

Song, Jun-Ling; Zhang, Jian-Han; Mao, Jiang-Gao

2016-01-01

We reported the synthesis and crystal structures of alkali metal and alkali-earth metal phosphite, namely, CsV 2 (H 3 O)(HPO 3 ) 4 (1), and Ba 3 V 2 (HPO 3 ) 6 (2). Both compounds were prepared by hydrothermal reactions and feature unique new structures. They both exhibit 3D complicated frameworks based on VO 6 octahedra which are connected by HPO 3 tetrahedra via corner-sharing. Alkali or alkali earth metal cations are filled in the different channels of the frameworks. Topological analysis shows that the framework of CsV 2 (H 3 O) (HPO 3 ) 4 (1) is a new 3,3,3,4,5-connected network with the Schläfli symbol of {4.6 2 } 2 {4 2 .6 6 .8 2 }{6 3 }{6 5 .8}. The investigations of X-ray photoelectron spectroscopy (XPS) and magnetic measurement on CsV 2 (H 3 O)(HPO 3 ) 4 suggest a +3 oxidation state of the vanadium ions in compound 1. Photocatalytic performance was evaluated by photocatalytic H 2 evolution and degradation of methylene blue, which shows that both compounds exhibit activity under visible-light irradiation. IR spectrum, UV–vis-NIR spectrum and thermogravimetric analysis (TGA) of compounds were also investigated. - Graphical abstract: Metal vanadium phosphites with broad absorption for photocatalytic hydrogen evolution and the degradation of methylene blue aqueous solution. - Highlights: • Two new vanadium phosphites, CsV 2 (H 3 O)(HPO 3 ) 4 and Ba 3 V 2 (HPO 3 ) 6 , are reported. • CsV 2 (H 3 O)(HPO 3 ) 4 and Ba 3 V 2 (HPO 3 ) 6 feature complicated 3D framework structures with different channels. • CsV 2 (H 3 O)(HPO 3 ) 4 and Ba 3 V 2 (HPO 3 ) 6 exhibit strong and broad absorptions in the visible and Near IR region. • Photocatalytic properties of CsV 2 (H 3 O)(HPO 3 ) 4 and Ba 3 V 2 (HPO 3 ) 6 are investigated. • The magnetic measurement of CsV 2 (H 3 O)(HPO 3 ) 4 was performed in the temperature range of 2–300 K.

Tomato yellow vein streak virus: relationship with Bemisia tabaci biotype B and host range Tomato yellow vein streak virus: interação com a Bemisia tabaci biótipo B e gama de hospedeiros

Directory of Open Access Journals (Sweden)

Ana Carolina Firmino

2009-12-01

Full Text Available The Tomato yellow vein streak virus (ToYVSV is a putative species of begomovirus, which was prevalent on tomato crops in São Paulo State, Brazil, until 2005. The objectives of this study were to evaluate the interaction between ToYVSV and its vector Bemisia tabaci biotype B and to identify alternative hosts for the virus. The minimum acquisition and inoculation access periods of ToYVSV by B. tabaci were 30 min and 10 min, respectively. Seventy five percent of tomato-test plants were infected when the acquisition and inoculation access periods were 24 h. The latent period of the virus in the insect was 16 h. The ToYVSV was retained by B. tabaci until 20 days after acquisition. First generation of adult whiteflies obtained from viruliferous females were virus free as shown by PCR analysis and did not transmit the virus to tomato plants. Out of 34 species of test-plants inoculated with ToYVSV only Capsicum annuum, Chenopodium amaranticolor, C. quinoa, Datura stramonium, Gomphrena globosa, Nicotiana clevelandii and N. tabacum cv. TNN were susceptible to infection. B. tabaci biotype B was able to acquire the virus from all these susceptible species, transmitting it to tomato plants.O Tomato yellow vein streak virus (ToYVSV é uma espécie putativa de begomovirus que infecta o tomateiro (Solanum lycopersicon em diversas regiões do Brasil onde se cultiva essa solanácea, sendo a espécie prevalente no estado de São Paulo até 2005. Estudou-se a interação do ToYVSV com a Bemisia tabaci biótipo B e identificaram-se hospedeiras alternativas deste vírus. Os períodos de acesso mínimo de aquisição (PAA e de inoculação (PAI foram de 30 min e 10 min, respectivamente. A porcentagem de plantas infectadas chegou até cerca de 75% após um PAA e PAI de 24 h. O período de latência do vírus no vetor foi de 16 horas. O ToYVSV foi retido pela B. tabaci até 20 dias após a aquisição do vírus. Não foi detectada transmissão do vírus para prog

The Cucumber vein yellowing virus silencing suppressor P1b can functionally replace HCPro in Plum pox virus infection in a host-specific manner.

Science.gov (United States)

Carbonell, Alberto; Dujovny, Gabriela; García, Juan Antonio; Valli, Adrian

2012-02-01

Plant viruses of the genera Potyvirus and Ipomovirus (Potyviridae family) use unrelated RNA silencing suppressors (RSS) to counteract antiviral RNA silencing responses. HCPro is the RSS of Potyvirus spp., and its activity is enhanced by the upstream P1 protein. Distinctively, the ipomovirus Cucumber vein yellowing virus (CVYV) lacks HCPro but contains two P1 copies in tandem (P1aP1b), the second of which functions as RSS. Using chimeras based on the potyvirus Plum pox virus (PPV), we found that P1b can functionally replace HCPro in potyviral infections of Nicotiana plants. Interestingly, P1a, the CVYV protein homologous to potyviral P1, disrupted the silencing suppression activity of P1b and reduced the infection efficiency of PPV in Nicotiana benthamiana. Testing the influence of RSS in host specificity, we found that a P1b-expressing chimera poorly infected PPV's natural host, Prunus persica. Conversely, P1b conferred on PPV chimeras the ability to replicate locally in cucumber, CVYV's natural host. The deleterious effect of P1a on PPV infection is host dependent, because the P1aP1b-expressing PPV chimera accumulated in cucumber to higher levels than PPV expressing P1b alone. These results demonstrate that a potyvirus can use different RSS, and that particular RSS and upstream P1-like proteins contribute to defining the virus host range.

Neutron Radiation Shielding For The NIF Streaked X-Ray Detector (SXD) Diagnostic

Energy Technology Data Exchange (ETDEWEB)

Song, P; Holder, J; Young, B; Kalantar, D; Eder, D; Kimbrough, J

2006-11-02

The National Ignition Facility (NIF) at Lawrence Livermore National Laboratory (LLNL) is preparing for the National Ignition Campaign (NIC) scheduled in 2010. The NIC is comprised of several ''tuning'' physics subcampaigns leading up to a demonstration of Inertial Confinement Fusion (ICF) ignition. In some of these experiments, time-resolved x-ray imaging of the imploding capsule may be required to measure capsule trajectory (shock timing) or x-ray ''bang-time''. A capsule fueled with pure tritium (T) instead of a deutriun-tritium (DT) mixture is thought to offer useful physics surrogacy, with reduced yields of up to 5e14 neutrons. These measurements will require the use of the NIF streak x-ray detector (SXD). The resulting prompt neutron fluence at the planned SXD location ({approx}1.7 m from the target) would be {approx}1.4e9/cm{sup 2}. Previous measurements suggest the onset of significant background at a neutron fluence of {approx} 1e8/cm{sup 2}. The radiation damage and operational upsets which starts at {approx}1e8 rad-Si/sec must be factored into an integrated experimental campaign plan. Monte Carlo analyses were performed to predict the neutron and gamma/x-ray fluences and radiation doses for the proposed diagnostic configuration. A possible shielding configuration is proposed to mitigate radiation effects. The primary component of this shielding is an 80 cm thickness of Polyethylene (PE) between target chamber center (TCC) and the SXD diagnostic. Additionally, 6-8 cm of PE around the detector provide from the large number of neutrons that scatter off the inside of the target chamber. This proposed shielding configuration reduces the high-energy neutron fluence at the SXD by approximately a factor {approx}50.

Neutron Radiation Shielding For The NIF Streaked X-Ray Detector (SXD) Diagnostic

International Nuclear Information System (INIS)

Song, P; Holder, J; Young, B; Kalantar, D; Eder, D; Kimbrough, J

2006-01-01

The National Ignition Facility (NIF) at Lawrence Livermore National Laboratory (LLNL) is preparing for the National Ignition Campaign (NIC) scheduled in 2010. The NIC is comprised of several ''tuning'' physics subcampaigns leading up to a demonstration of Inertial Confinement Fusion (ICF) ignition. In some of these experiments, time-resolved x-ray imaging of the imploding capsule may be required to measure capsule trajectory (shock timing) or x-ray ''bang-time''. A capsule fueled with pure tritium (T) instead of a deutriun-tritium (DT) mixture is thought to offer useful physics surrogacy, with reduced yields of up to 5e14 neutrons. These measurements will require the use of the NIF streak x-ray detector (SXD). The resulting prompt neutron fluence at the planned SXD location (∼1.7 m from the target) would be ∼1.4e9/cm 2 . Previous measurements suggest the onset of significant background at a neutron fluence of ∼ 1e8/cm 2 . The radiation damage and operational upsets which starts at ∼1e8 rad-Si/sec must be factored into an integrated experimental campaign plan. Monte Carlo analyses were performed to predict the neutron and gamma/x-ray fluences and radiation doses for the proposed diagnostic configuration. A possible shielding configuration is proposed to mitigate radiation effects. The primary component of this shielding is an 80 cm thickness of Polyethylene (PE) between target chamber center (TCC) and the SXD diagnostic. Additionally, 6-8 cm of PE around the detector provide from the large number of neutrons that scatter off the inside of the target chamber. This proposed shielding configuration reduces the high-energy neutron fluence at the SXD by approximately a factor ∼50

Streaks of Life: The Introduction and Translation of a Passage from the Autobiography of Ethel Smyth

Directory of Open Access Journals (Sweden)

Nina Dragičević

2015-09-01

Full Text Available In the translated passage, taken from the autobiography of Ethel Smyth, Streaks of Life, the author writes about the position of women in music, her own position—that of a female composer in the early 20th century England. The author speaks of terror and the patronizing diction of patriarchal society. She continues with a critique of media representations, but mostly focuses on difficulties in the attempts to place one’s (woman’s artwork in public space. Despite the fact that she was romantically involved with women throughout her life and wrote about them in her other autobiographical texts, she refuses to connect lesbian identity with her work—perhaps the reason lies in the ‘safety’ of being in a closet, or because of her perceived irrelevance of lesbian identities towards artist’s output. What she emphasizes more is a woman’s perspective—reasonably so, since she was deeply involved with the suffrage movement. In her descriptions, she considers economic and political contexts of the First World War era, which gave the opportunity of holding a (temporary job for women—both in factories and in orchestras. At the end, she returns to specifics of women’s position in society, and calls for a rebellion against the tyranny of the patriarchy.

Lucerne transient streak virus; a Recently Detected Virus Infecting Alfafa (Medicago sativa in Central Saudi Arabia

Directory of Open Access Journals (Sweden)

Ahmed Raza

2017-02-01

Full Text Available A survey was conducted to determine the status of Lucerne transient streak virus (LTSV in three high-yielding alfalfa regions in central Saudi Arabia (Riyadh, Qassim, and Hail during 2014. Three hundred and eight symptomatic alfalfa, and seven Sonchus oleraceus samples were collected. DAS-ELISA indicated that 59 of these samples were positive to LTSV. Two isolates of LTSV from each region were selected for molecular studies. RT-PCR confirmed the presence of LTSV in the selected samples using a specific primer pair. Percentage identity and homology tree comparisons revealed that all Saudi isolates were more closely related to each other but also closely related to the Canadian isolate-JQ782213 (97.1–97.6% and the New Zealand isolate-U31286 (95.8–97.1%. Comparing Saudi isolates of LTSV with ten other sobemoviruses based on the coat protein gene sequences confirmed the distant relationship between them. Eleven out of fourteen plant species used in host range study were positive to LTSV. This is the first time to document that Trifolium alexandrinum, Nicotiana occidentalis, Chenopodium glaucum, and Lathyrus sativus are new host plant species for LTSV and that N. occidentalis being a good propagative host for it.

Infant mortality rates and structure in a town near a nuclear power enterprise

International Nuclear Information System (INIS)

Tret'yakov, F.D.; Voronina, Z.I.; Voronin, P.F.; Demin, S.N.

1991-01-01

The paper is devoted to analysis of the rates and structure of mortality of infants aged under 1 in a town, situated near a nuclear power enterprise (NPE). Altogether 38124 infants born in 1950-1978, were investigated. The dead infants (1160) were divided into 3 groups with relation to their parents' place of work: 1 - infants whose parents worked in the NPE; 2 - infants whose parents worked in town factories and offices; 3 - all infants in the town. The total doses of γ-irradiation for mothers were 10-400 cSv, those for fathers - 30-520 cSv, intrauterine irradiation of a fetus was 0.5-0.55 cSv. The individual effective equivalent dose of irradiation of the residents of the town was 17.3 cSv over 40 years. Occupational γ-irradiation of the parents at doses exceeding the maximum permissible ones in the first 10 years of work at the NPE made no effect on the mortality rates in infants of the first generation

Complete nucleotide sequence of watermelon chlorotic stunt virus originating from Oman.

Science.gov (United States)

Khan, Akhtar J; Akhtar, Sohail; Briddon, Rob W; Ammara, Um; Al-Matrooshi, Abdulrahman M; Mansoor, Shahid

2012-07-01

Watermelon chlorotic stunt virus (WmCSV) is a bipartite begomovirus (genus Begomovirus, family Geminiviridae) that causes economic losses to cucurbits, particularly watermelon, across the Middle East and North Africa. Recently squash (Cucurbita moschata) grown in an experimental field in Oman was found to display symptoms such as leaf curling, yellowing and stunting, typical of a begomovirus infection. Sequence analysis of the virus isolated from squash showed 97.6-99.9% nucleotide sequence identity to previously described WmCSV isolates for the DNA A component and 93-98% identity for the DNA B component. Agrobacterium-mediated inoculation to Nicotiana benthamiana resulted in the development of symptoms fifteen days post inoculation. This is the first bipartite begomovirus identified in Oman. Overall the Oman isolate showed the highest levels of sequence identity to a WmCSV isolate originating from Iran, which was confirmed by phylogenetic analysis. This suggests that WmCSV present in Oman has been introduced from Iran. The significance of this finding is discussed.

Metal-induced streak artifact reduction using iterative reconstruction algorithms in x-ray computed tomography image of the dentoalveolar region.

Science.gov (United States)

Dong, Jian; Hayakawa, Yoshihiko; Kannenberg, Sven; Kober, Cornelia

2013-02-01

The objective of this study was to reduce metal-induced streak artifact on oral and maxillofacial x-ray computed tomography (CT) images by developing the fast statistical image reconstruction system using iterative reconstruction algorithms. Adjacent CT images often depict similar anatomical structures in thin slices. So, first, images were reconstructed using the same projection data of an artifact-free image. Second, images were processed by the successive iterative restoration method where projection data were generated from reconstructed image in sequence. Besides the maximum likelihood-expectation maximization algorithm, the ordered subset-expectation maximization algorithm (OS-EM) was examined. Also, small region of interest (ROI) setting and reverse processing were applied for improving performance. Both algorithms reduced artifacts instead of slightly decreasing gray levels. The OS-EM and small ROI reduced the processing duration without apparent detriments. Sequential and reverse processing did not show apparent effects. Two alternatives in iterative reconstruction methods were effective for artifact reduction. The OS-EM algorithm and small ROI setting improved the performance. Copyright © 2012 Elsevier Inc. All rights reserved.

Serological and molecular detection of Bean leaf roll and Chickpea chlorotic stunt luteoviruses in chickpea from Iran

Directory of Open Access Journals (Sweden)

Hajiyusef Tara

2017-06-01

Full Text Available Chickpea (Cicer arietinum L. is an important legume crop and widely cultivated in northwestern provinces of Iran. During a survey in the 2015 growing season a total of 170 selected chickpea plants with general yellowing symptoms including stunting and leaf bronzing were collected. Serological Elisa and tissue blot immunoassay (TIBA tests revealed the presence of Bean leaf roll virus (BLRV and Chickpea chlorotic stunt virus (CpCSV as the predominant viruses in the region. Some serologically positive samples of BLRV and CpCSV were selected and rechecked by RT-PCR. The results of amplified PCR products using a specific pair of primers towards the Cp gene region of the viruses were approximately 413 bp for CpCSV and 391 bp for BLRV. Results obtained from sequence comparison of BLRV (IR-F-Lor-5 isolate form two subgroups with eight other BLRV isolates from GeneBank indicating a high homology of 96% with isolates from Argentina, Germany, Tunisia, USA, Spain, and Colombia. An isolate from Norabad (Iran (IR-Nor had 98% homology with HQ840727 Libyan isolate. CpCSV sequence comparison with six other GeneBank isolates indicated 98% homology with isolates from Tunisia and Azerbaijan. The overall results of this research revealed the CpCSV and BLRV (luteoviruses associated with the yellowing disease syndrome of chickpea crops in the surveyed region.

Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus

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Fangquan Wang

2016-05-01

Full Text Available Rice black-streaked dwarf virus (RBSDV belongs to the genus Fijivirus in the family of Reoviridae and causes severe yield loss in rice-producing areas in Asia. RNA silencing, as a natural defence mechanism against plant viruses, has been successfully exploited for engineering virus resistance in plants, including rice. In this study, we generated transgenic rice lines harbouring a hairpin RNA (hpRNA construct targeting four RBSDV genes, S1, S2, S6 and S10, encoding the RNA-dependent RNA polymerase, the putative core protein, the RNA silencing suppressor and the outer capsid protein, respectively. Both field nursery and artificial inoculation assays of three generations of the transgenic lines showed that they had strong resistance to RBSDV infection. The RBSDV resistance in the segregating transgenic populations correlated perfectly with the presence of the hpRNA transgene. Furthermore, the hpRNA transgene was expressed in the highly resistant transgenic lines, giving rise to abundant levels of 21–24 nt small interfering RNA (siRNA. By small RNA deep sequencing, the RBSDV-resistant transgenic lines detected siRNAs from all four viral gene sequences in the hpRNA transgene, indicating that the whole chimeric fusion sequence can be efficiently processed by Dicer into siRNAs. Taken together, our results suggest that long hpRNA targeting multiple viral genes can be used to generate stable and durable virus resistance in rice, as well as other plant species.

Hairpin RNA Targeting Multiple Viral Genes Confers Strong Resistance to Rice Black-Streaked Dwarf Virus.

Science.gov (United States)

Wang, Fangquan; Li, Wenqi; Zhu, Jinyan; Fan, Fangjun; Wang, Jun; Zhong, Weigong; Wang, Ming-Bo; Liu, Qing; Zhu, Qian-Hao; Zhou, Tong; Lan, Ying; Zhou, Yijun; Yang, Jie

2016-05-11

Rice black-streaked dwarf virus (RBSDV) belongs to the genus Fijivirus in the family of Reoviridae and causes severe yield loss in rice-producing areas in Asia. RNA silencing, as a natural defence mechanism against plant viruses, has been successfully exploited for engineering virus resistance in plants, including rice. In this study, we generated transgenic rice lines harbouring a hairpin RNA (hpRNA) construct targeting four RBSDV genes, S1, S2, S6 and S10, encoding the RNA-dependent RNA polymerase, the putative core protein, the RNA silencing suppressor and the outer capsid protein, respectively. Both field nursery and artificial inoculation assays of three generations of the transgenic lines showed that they had strong resistance to RBSDV infection. The RBSDV resistance in the segregating transgenic populations correlated perfectly with the presence of the hpRNA transgene. Furthermore, the hpRNA transgene was expressed in the highly resistant transgenic lines, giving rise to abundant levels of 21-24 nt small interfering RNA (siRNA). By small RNA deep sequencing, the RBSDV-resistant transgenic lines detected siRNAs from all four viral gene sequences in the hpRNA transgene, indicating that the whole chimeric fusion sequence can be efficiently processed by Dicer into siRNAs. Taken together, our results suggest that long hpRNA targeting multiple viral genes can be used to generate stable and durable virus resistance in rice, as well as other plant species.

An alternative scanning protocol to eliminate perivenous streak artifacts in thoracic spiral computed tomography. The usefulness of ankle vein contrast injection

International Nuclear Information System (INIS)

Hara, Masaki; Ogino, Hiroyuki; Itoh, Masato; Ohba, Satoru; Andoh, Keiichi; Kitase, Masanori; Goodman, P.C.

2001-01-01

The purpose of this study was to eliminate perivenous streak artifact from contrast-enhanced thoracic spiral CT using superficial ankle vein injection (ankle vein method). Forty-four consecutive inpatients had thoracic spiral CT following ankle vein method and were compared to 30 patients who had conventional antecubital vein injection. Non-ionic 300 mg/mL contrast material were injected at 1-1.5 mL/sec with a power injector. Twenty mL of normal saline was injected immediately thereafter as a flushing bolus. Qualitative scores of perivenous artifact (1 to 5=extensive) and vascular enhancement (1 to 5=excellent) were recorded. Complications were investigated clinically. The mean score of perivenous artifact was 1 with the ankle vein method and 4.4 with the conventional method (P<.0001). Scores of pulmonary artery opacification were almost equal (4.2 and 4.5 respectively, P=.11). No complications were observed. The ankle vein method is an effective method to prevent perivenous artifact during thoracic spiral CT. (author)

Jasmonic acid-mediated defense suppresses brassinosteroid-mediated susceptibility to Rice black streaked dwarf virus infection in rice.

Science.gov (United States)

He, Yuqing; Zhang, Hehong; Sun, Zongtao; Li, Junmin; Hong, Gaojie; Zhu, Qisong; Zhou, Xuebiao; MacFarlane, Stuart; Yan, Fei; Chen, Jianping

2017-04-01

Plant hormones play a vital role in plant immune responses. However, in contrast to the relative wealth of information on hormone-mediated immunity in dicot plants, little information is available on monocot-virus defense systems. We used a high-throughput-sequencing approach to compare the global gene expression of Rice black-streaked dwarf virus (RBSDV)-infected rice plants with that of healthy plants. Exogenous hormone applications and transgenic rice were used to test RBSDV infectivity and pathogenicity. Our results revealed that the jasmonic acid (JA) pathway was induced while the brassinosteroid (BR) pathway was suppressed in infected plants. Foliar application of methyl jasmonate (MeJA) or brassinazole (BRZ) resulted in a significant reduction in RBSDV incidence, while epibrassinolide (BL) treatment increased RBSDV infection. Infection studies using coi1-13 and Go mutants demonstrated JA-mediated resistance and BR-mediated susceptibility to RBSDV infection. A mixture of MeJA and BL treatment resulted in a significant reduction in RBSDV infection compared with a single BL treatment. MeJA application efficiently suppressed the expression of BR pathway genes, and this inhibition depended on the JA coreceptor OsCOI1. Collectively, our results reveal that JA-mediated defense can suppress the BR-mediated susceptibility to RBSDV infection. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Impacts of Socially Responsible Corporate Activities on Korean Consumers’ Corporate Evaluations in the Agrifood Industry

Directory of Open Access Journals (Sweden)

Dongmin Lee

2016-12-01

Full Text Available The variety of socially responsible corporate activities employed in the agrifood industry has been broadening. An increasing number of agrifood companies have been employing strategic approaches to socially responsible activities, reinforced by Porter and Kramer’s concept of creating shared value (CSV. This study compares the effects on corporate evaluations of two socially responsible corporate activities: philanthropic giving and CSV. Because prior studies concerning the effects of corporate prosocial behaviors on consumer responses have yielded mixed results, the present study examines the effects of a priori perceptions of companies by using corporate stereotypes as moderators. The results show that the type of socially responsible corporate activity (CSV vs. philanthropic giving does not influence corporate evaluations. However, in cases of CSV (vs. philanthropic giving, consumers evaluate an unwarm but competent company more attractively and place higher value on an incompetent but warm company. This research is important not only for enriching existing literature, but also for providing guidelines to practitioners with respect to selecting appropriate corporate initiatives based on perceived consumer stereotypes.

Chemical Safety Vulnerability Working Group report. Volume 2

International Nuclear Information System (INIS)

1994-09-01

The Chemical Safety Vulnerability (CSV) Working Group was established to identify adverse conditions involving hazardous chemicals at DOE facilities that might result in fires or explosions, release of hazardous chemicals to the environment, or exposure of workers or the public to chemicals. A CSV Review was conducted in 148 facilities at 29 sites. Eight generic vulnerabilities were documented related to: abandoned chemicals and chemical residuals; past chemical spills and ground releases; characterization of legacy chemicals and wastes; disposition of legacy chemicals; storage facilities and conditions; condition of facilities and support systems; unanalyzed and unaddressed hazards; and inventory control and tracking. Weaknesses in five programmatic areas were also identified related to: management commitment and planning; chemical safety management programs; aging facilities that continue to operate; nonoperating facilities awaiting deactivation; and resource allocations. Volume 2 consists of seven appendices containing the following: Tasking memorandums; Project plan for the CSV Review; Field verification guide for the CSV Review; Field verification report, Lawrence Livermore National Lab.; Field verification report, Oak Ridge Reservation; Field verification report, Savannah River Site; and the Field verification report, Hanford Site

Chemical Safety Vulnerability Working Group report. Volume 2

Energy Technology Data Exchange (ETDEWEB)

1994-09-01

The Chemical Safety Vulnerability (CSV) Working Group was established to identify adverse conditions involving hazardous chemicals at DOE facilities that might result in fires or explosions, release of hazardous chemicals to the environment, or exposure of workers or the public to chemicals. A CSV Review was conducted in 148 facilities at 29 sites. Eight generic vulnerabilities were documented related to: abandoned chemicals and chemical residuals; past chemical spills and ground releases; characterization of legacy chemicals and wastes; disposition of legacy chemicals; storage facilities and conditions; condition of facilities and support systems; unanalyzed and unaddressed hazards; and inventory control and tracking. Weaknesses in five programmatic areas were also identified related to: management commitment and planning; chemical safety management programs; aging facilities that continue to operate; nonoperating facilities awaiting deactivation; and resource allocations. Volume 2 consists of seven appendices containing the following: Tasking memorandums; Project plan for the CSV Review; Field verification guide for the CSV Review; Field verification report, Lawrence Livermore National Lab.; Field verification report, Oak Ridge Reservation; Field verification report, Savannah River Site; and the Field verification report, Hanford Site.

Quantitative estimation of compliance of human systemic veins by occlusion plethysmography with radionuclide

International Nuclear Information System (INIS)

Takatsu, Hisato; Gotoh, Kohshi; Suzuki, Takahiko; Ohsumi, Yukio; Yagi, Yasuo; Tsukamoto, Tatsuo; Terashima, Yasushi; Nagashima, Kenshi; Hirakawa, Senri

1989-01-01

Volume-pressure relationship and compliance of human systemic veins were estimated quantitatively and noninvasively using radionuclide. The effect of nitroglycerin (NTG) on these parameters was examined. Plethysmography with radionuclide (RN) was performed using the occlusion method on the forearm in 56 patients with various cardiac diseases after RN angiocardiography with 99m Tc-RBC. The RN counts-venous pressure curve was constructed from (1) the changes in radioactivity from region of interest on the forearm that were considered to reflect the changes in the blood volume of the forearm, and (2) the changes in the pressure of the forearm vein (fv) due to venous occlusion. The specific compliance of the forearm veins (Csp.fv; (1/V)·(ΔV/ΔP)) was obtained graphically from this curve at each patient's venous pressure (Pv). Csp.fv was 0.044±0.012 mmHg -1 in class I (mean±SD; n=13), 0.033±0.007 mmHg -1 in class II (n=30), and 0.019±0.007 mmHg -1 in class III (n=13), of the previous NYHA classification of work tolerance. There were significant differences in Csp.fv among the three classes. The systemic venous blood volume (Vsv) was determined by subtracting the central blood volume, measured by RN-angiocardiography, from total blood volume, measured by the indicator dilution method utilizing 131 I-human serum albumin. Systemic venous compliance (Csv) was calculated from Csv=Csp.fv·Vsv. The Csv was 127.2±24.8 ml·mmHg -1 (mean±SD) in class I, 101.1±24.1 ml·mmHg -1 in class II and 62.2±28.1 ml·mmHg -1 in class III. There were significant differences in Csv among the three classes. The class I Csv value was calculated to be 127.2±24.8 ml·mmHg -1 and the Csv/body weight was calculated to be 2.3±0.7 ml·mmHg -1 ·kg -1 of body weight. The administration of NTG increased Csv significantly in all cases. (J.P.N.)

Method: a single nucleotide polymorphism genotyping method for Wheat streak mosaic virus.

Science.gov (United States)

Rogers, Stephanie M; Payton, Mark; Allen, Robert W; Melcher, Ulrich; Carver, Jesse; Fletcher, Jacqueline

2012-05-17

The September 11, 2001 attacks on the World Trade Center and the Pentagon increased the concern about the potential for terrorist attacks on many vulnerable sectors of the US, including agriculture. The concentrated nature of crops, easily obtainable biological agents, and highly detrimental impacts make agroterrorism a potential threat. Although procedures for an effective criminal investigation and attribution following such an attack are available, important enhancements are still needed, one of which is the capability for fine discrimination among pathogen strains. The purpose of this study was to develop a molecular typing assay for use in a forensic investigation, using Wheat streak mosaic virus (WSMV) as a model plant virus. This genotyping technique utilizes single base primer extension to generate a genetic fingerprint. Fifteen single nucleotide polymorphisms (SNPs) within the coat protein and helper component-protease genes were selected as the genetic markers for this assay. Assay optimization and sensitivity testing was conducted using synthetic targets. WSMV strains and field isolates were collected from regions around the world and used to evaluate the assay for discrimination. The assay specificity was tested against a panel of near-neighbors consisting of genetic and environmental near-neighbors. Each WSMV strain or field isolate tested produced a unique SNP fingerprint, with the exception of three isolates collected within the same geographic location that produced indistinguishable fingerprints. The results were consistent among replicates, demonstrating the reproducibility of the assay. No SNP fingerprints were generated from organisms included in the near-neighbor panel, suggesting the assay is specific for WSMV. Using synthetic targets, a complete profile could be generated from as low as 7.15 fmoles of cDNA. The molecular typing method presented is one tool that could be incorporated into the forensic science tool box after a thorough

Viruses of asparagus.

Science.gov (United States)

Tomassoli, Laura; Tiberini, Antonio; Vetten, Heinrich-Josef

2012-01-01

The current knowledge on viruses infecting asparagus (Asparagus officinalis) is reviewed. Over half a century, nine virus species belonging to the genera Ilarvirus, Cucumovirus, Nepovirus, Tobamovirus, Potexvirus, and Potyvirus have been found in this crop. The potyvirus Asparagus virus 1 (AV1) and the ilarvirus Asparagus virus 2 (AV2) are widespread and negatively affect the economic life of asparagus crops reducing yield and increasing the susceptibility to biotic and abiotic stress. The main properties and epidemiology of AV1 and AV2 as well as diagnostic techniques for their detection and identification are described. Minor viruses and control are briefly outlined. Copyright © 2012 Elsevier Inc. All rights reserved.

Radioimmunoanalysis of the immune response and tissue lipoperoxidation of rats for low doses contaminated with tritiated water

International Nuclear Information System (INIS)

Bejan, A.; Turcu, Gr.

1996-01-01

The paper presents the evaluation of the humoral immune response and liver and kidney lipoperoxidation on rats acutely and chronically contaminated with low doses of tritiated water (HTO). The contamination doses for both situations were 0.5 cSv, 5 cSv and 10 cSv. By humoral immune response analysis we mean the measurement, through a radioimmunoanalysis (RIA) method, of the two intrinsic parameters of an antiserum, that is, the mean antibodies concentration and the mean antibodies affinity constant. We followed the liver and kidney lipidic peroxidation through malondialdehyde (MDA) formation assayed by the thiobarbituric acid (TBA) reaction. The humoral immune response and lipoperoxidation have been compared with the response of an uncontaminated group by the Student t test. (author). 17 refs., 2 tabs

CAX a software for automated spectrum analysis

International Nuclear Information System (INIS)

Zahn, Guilherme S.; Genezini, Frederico A.

2017-01-01

In this work, the scripting capabilities of Genie-2000 were used to develop a software that automatically analyses all spectrum files in either Ortec's CHN or Canberra's MCA or CNF formats in a folder, generating two output files: a print-ready text le (.DAT) and a Comma-Separated Values (.CSV) le which can be easily imported in any major spreadsheet software. This software, named CAX ('Convert and Analyse for eXcel'), uses Genie-2000's functions to import spectrum files into Genie's native CNF format and analyze the converted spectra. The software can also, if requested, import energy and FWHM calibrations from a stored calibrated spectrum. The print-ready output le (.DAT) is generated by Genie-2000 using a customized script, and the CSV le is generated by a custom-built DAT2CSV software which generates a CSV le that complies to the Brazilian standards, with commas as a decimal indicator and semicolons as eld separators. This software is already used in the daily routines in IPEN's Neutron Activation Laboratory, greatly reducing the time required for sample analyses, as well as reducing the possibility of transcription errors. (author)

Eukaryotic translation initiation factor 2B-beta (eIF2Bβ), a new class of plant virus resistance gene.

Science.gov (United States)

Shopan, Jannat; Mou, Haipeng; Zhang, Lili; Zhang, Changtong; Ma, Weiwei; Walsh, John A; Hu, Zhongyuan; Yang, Jinghua; Zhang, Mingfang

2017-06-01

Recessive resistances to plant viruses in the Potyvirus genus have been found to be based on mutations in the plant eukaryotic translation initiation factors, eIF4E and eIF4G or their isoforms. Here we report that natural, monogenic recessive resistance to the Potyvirus Turnip mosaic virus (TuMV) has been found in a number of mustard (Brassica juncea) accessions. Bulked segregant analysis and sequencing of resistant and susceptible plant lines indicated the resistance is controlled by a single recessive gene, recessive TuMV resistance 03 (retr03), an allele of the eukaryotic translation initiation factor 2B-beta (eIF2Bβ). Silencing of eIF2Bβ in a TuMV-susceptible mustard plant line and expression of eIF2Bβ from a TuMV-susceptible line in a TuMV-resistant mustard plant line confirmed the new resistance mechanism. A functional copy of a specific allele of eIF2Bβ is required for efficient TuMV infection. eIF2Bβ represents a new class of virus resistance gene conferring resistance to any pathogen. eIF2B acts as a guanine nucleotide exchange factor (GEF) for its GTP-binding protein partner eIF2 via interaction with eIF2·GTP at an early step in translation initiation. Further genotyping indicated that a single non-synonymous substitution (A120G) in the N-terminal region of eIF2Bβ was responsible for the TuMV resistance. A reproducible marker has been developed, facilitating marker-assisted selection for TuMV resistance in B. juncea. Our findings provide a new target for seeking natural resistance to potyviruses and new opportunities for the control of potyviruses using genome editing techniques targeted on eIF2Bβ. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Properties of a virus causing mosaic and leaf curl disease of Celosia argentea L. in Nigeria.

Science.gov (United States)

Owolabi, T A; Taiwo, M A; Thottappilly, G A; Shoyinka, S A; Proll, E; Rabenstein, F

1998-06-01

A sap transmissible virus, causing mosaic and leaf curl disease of Celosia argentea, was isolated at vegetable farms in Amuwo Odofin, Tejuoso, and Abule Ado, Lagos, Nigeria. The virus had a restricted host range confined to a few species of the Amaranthaceae, Chenopodiaceae and Solanaceae families. It failed to infect several other species of the Aizoaceae, Brassicaceae, Cucurbitaceae, Fabaceae, Lamiaceae, Malvaceae, Poaceae and Tiliaceae families. The virus was transmitted in a non-persistent manner by Aphis spiraecola and Toxoptera citricidus but not by eight other aphid species tested. There was no evidence of transmission by seeds of C. argentae varieties. The viral coat protein had a relative molecular mass (M(r)) of about 30.2 K. Electron microscopy of purified virus preparations revealed flexuous rod shaped particles of about 750 nm in length. Serological studies were performed using the enzyme-linked immunosorbent assay (ELISA), immunosorbent electron microscopy (ISEM) and Western blot analysis. The virus reacted positively with an universal potyvirus group monoclonal antibody (MoAb) and MoAb P-3-3H8 raised against peanut stripe potyvirus. It also reacted with polyclonal antibodies raised against several potyviruses including asparagus virus-1 (AV-1), turnip mosaic virus (TuMV), maize dwarf mosaic virus (MDMV), watermelon mosaic virus (WMV-2), plum pox virus (PPV), soybean mosaic virus (SoyMV), lettuce mosaic virus (LMV), bean common mosaic virus (BCMV) and beet mosaic virus (BMV) in at least one of the serological assays used. On the basis of host range, mode of transmission, and available literature data, the celosia virus seems to be different from potyviruses previously reported to infect vegetables in Nigeria. The name celosia mosaic virus (CIMV) has been proposed for this virus.

Method: a single nucleotide polymorphism genotyping method for Wheat streak mosaic virus

Science.gov (United States)

2012-01-01

Background The September 11, 2001 attacks on the World Trade Center and the Pentagon increased the concern about the potential for terrorist attacks on many vulnerable sectors of the US, including agriculture. The concentrated nature of crops, easily obtainable biological agents, and highly detrimental impacts make agroterrorism a potential threat. Although procedures for an effective criminal investigation and attribution following such an attack are available, important enhancements are still needed, one of which is the capability for fine discrimination among pathogen strains. The purpose of this study was to develop a molecular typing assay for use in a forensic investigation, using Wheat streak mosaic virus (WSMV) as a model plant virus. Method This genotyping technique utilizes single base primer extension to generate a genetic fingerprint. Fifteen single nucleotide polymorphisms (SNPs) within the coat protein and helper component-protease genes were selected as the genetic markers for this assay. Assay optimization and sensitivity testing was conducted using synthetic targets. WSMV strains and field isolates were collected from regions around the world and used to evaluate the assay for discrimination. The assay specificity was tested against a panel of near-neighbors consisting of genetic and environmental near-neighbors. Result Each WSMV strain or field isolate tested produced a unique SNP fingerprint, with the exception of three isolates collected within the same geographic location that produced indistinguishable fingerprints. The results were consistent among replicates, demonstrating the reproducibility of the assay. No SNP fingerprints were generated from organisms included in the near-neighbor panel, suggesting the assay is specific for WSMV. Using synthetic targets, a complete profile could be generated from as low as 7.15 fmoles of cDNA. Conclusion The molecular typing method presented is one tool that could be incorporated into the forensic

Obtaining of transgenic papaya plants var. Maradol roja that carry out the rice oryzacystatin gene

Directory of Open Access Journals (Sweden)

Milady F. Mendoza

2004-10-01

Full Text Available Papaya (Carica papaya L., is severely affected by Papaya Ringspot virus, which belongs to plant potyvirus group. A recent strategy for pest control produced by this virus is the transformation with genes encoding cysteine proteinase inhibitors. Rice oryzacistatin gene encoding for cystatins, was inserted in a pCAMBIA binary vector, for genetic transformation of papaya somatic embryos var. Maradol roja, mediated by gene gun. Gene integration was confirmed by means of polimerase chain reaction using the primers designed from gene bar sequence. Forty out of eighty in vitro transgenic papaya lines amplified a 402 fragment which correspond to the expecting size. Key words: Carica papaya, genetic engineering, potyvirus, proteinase inhibitor

Transparency, Accountability, and Engagement: A Recipe for Building Trust in Policing

Science.gov (United States)

2017-06-01

Toward Community-orientated Policing: Potential, Basic Requirements, and Threshold Questions,” Crime and Delinquency 33 (1987): 6–30. 49 More, Current...States,” in Sourcebook of Criminal Justice Statistics Online, accessed June 4, 2017, http://www.albany.edu/sourcebook/csv/ t2332011.csv. 89 Gary...to-date crime statistics , and empowered them to think creatively to develop individualized plans to address crime trends and conditions. His focus

Influence of rice black streaked dwarf virus on the ecological fitness of non-vector planthopper Nilaparvata lugens (Hemiptera: Delphacidae).

Science.gov (United States)

Xu, Hong-Xing; He, Xiao-Chan; Zheng, Xu-Song; Yang, Ya-Jun; Lu, Zhong-Xian

2014-08-01

Rice black streak dwarf virus (RBSDV) is transmitted by the small brown planthopper (SBPH), Laodelphax striatellus (Fallen). Non-vector rice brown planthopper (BPH), Nilaparvata lugens (Stål), shares the same host rice plants with SBPH in paddy fields. The changes in nutritional composition of rice plants infected by RBSDV and the ecological fitness of BPH feeding on the infected plants were studied under both artificial climate chamber and field conditions. Contents of 16 detected amino acids and soluble sugar in RBSDV infected rice plants were higher than those in the healthy ones. On the diseased plants BPH had significantly higher nymphal survival rates, nymphal duration of the males, weight of the female adults, as well as egg hatchability compared to BPH being fed on healthy plants. However, there was no obvious difference in female nymph duration, longevity and fecundity. Defense enzymes (superoxidase dismutase, SOD and catalase, CAT) and detoxifying enzymes (carboxylesterase, CAE and glutathione S-transferase, GST) in BPH adults fed on diseased plants had markedly higher activities. The results indicate rice plants infected by RBSDV improved the ecological fitness of the brown planthopper, a serious pest but not a transmitter of the RBSDV virus. © 2013 Institute of Zoology, Chinese Academy of Sciences.

A plant small polypeptide is a novel component of DNA-binding protein phosphatase 1-mediated resistance to plum pox virus in Arabidopsis.

Science.gov (United States)

Castelló, María José; Carrasco, Jose Luis; Navarrete-Gómez, Marisa; Daniel, Jacques; Granot, David; Vera, Pablo

2011-12-01

DNA-binding protein phosphatases (DBPs) have been identified as a novel class of plant-specific regulatory factors playing a role in plant-virus interactions. NtDBP1 from tobacco (Nicotiana tabacum) was shown to participate in transcriptional regulation of gene expression in response to virus infection in compatible interactions, and AtDBP1, its closest relative in the model plant Arabidopsis (Arabidopsis thaliana), has recently been found to mediate susceptibility to potyvirus, one of the most speciose taxa of plant viruses. Here, we report on the identification of a novel family of highly conserved small polypeptides that interact with DBP1 proteins both in tobacco and Arabidopsis, which we have designated DBP-interacting protein 2 (DIP2). The interaction of AtDIP2 with AtDBP1 was demonstrated in vivo by bimolecular fluorescence complementation, and AtDIP2 was shown to functionally interfere with AtDBP1 in yeast. Furthermore, reducing AtDIP2 gene expression leads to increased susceptibility to the potyvirus Plum pox virus and to a lesser extent also to Turnip mosaic virus, whereas overexpression results in enhanced resistance. Therefore, we describe a novel family of conserved small polypeptides in plants and identify AtDIP2 as a novel host factor contributing to resistance to potyvirus in Arabidopsis.

Understanding the immune system architecture and transcriptome responses to southern rice black-streaked dwarf virus in Sogatella furcifera.

Science.gov (United States)

Wang, Lin; Tang, Nan; Gao, Xinlei; Guo, Dongyang; Chang, Zhaoxia; Fu, Yating; Akinyemi, Ibukun A; Wu, Qingfa

2016-11-02

Sogatella furcifera, the white-backed planthopper (WBPH), has become one of the most destructive pests in rice production owing to its plant sap-sucking behavior and efficient transmission of Southern rice black-streaked dwarf virus (SRBSDV) in a circulative, propagative and persistent manner. The dynamic and complex SRBSDV-WBPH-rice plant interaction is still poorly understood. In this study, based on a homology-based genome-wide analysis, 348 immune-related genes belonging to 28 families were identified in WBPH. A transcriptome analysis of non-viruliferous (NVF) and viruliferous groups with high viral titers (HVT) and median viral titers (MVT) revealed that feeding on SRBSDV-infected rice plants has a significant impact on gene expression, regardless of viral titers in insects. We identified 278 up-regulated and 406 down-regulated genes shared among the NVF, MVT, and HVT groups and detected significant down-regulation of primary metabolism-related genes and oxidoreductase. In viruliferous WBPH with viral titer-specific transcriptome changes, 1,906 and 1,467 genes exhibited strict monotonically increasing and decreasing expression, respectively. The RNAi pathway was the major antiviral response to increasing viral titers among diverse immune responses. These results clarify the responses of immune genes and the transcriptome of WBPH to SRBSDV and improve our knowledge of the functional relationship between pathogen, vector, and host.

Evolution of endogenous sequences of banana streak virus: what can we learn from banana (Musa sp.) evolution?

Science.gov (United States)

Gayral, Philippe; Blondin, Laurence; Guidolin, Olivier; Carreel, Françoise; Hippolyte, Isabelle; Perrier, Xavier; Iskra-Caruana, Marie-Line

2010-07-01

Endogenous plant pararetroviruses (EPRVs) are viral sequences of the family Caulimoviridae integrated into the nuclear genome of numerous plant species. The ability of some endogenous sequences of Banana streak viruses (eBSVs) in the genome of banana (Musa sp.) to induce infections just like the virus itself was recently demonstrated (P. Gayral et al., J. Virol. 83:6697-6710, 2008). Although eBSVs probably arose from accidental events, infectious eBSVs constitute an extreme case of parasitism, as well as a newly described strategy for vertical virus transmission in plants. We investigated the early evolutionary stages of infectious eBSV for two distinct BSV species-GF (BSGFV) and Imové (BSImV)-through the study of their distribution, insertion polymorphism, and structure evolution among selected banana genotypes representative of the diversity of 60 wild Musa species and genotypes. To do so, the historical frame of host evolution was analyzed by inferring banana phylogeny from two chloroplast regions-matK and trnL-trnF-as well as from the nuclear genome, using 19 microsatellite loci. We demonstrated that both BSV species integrated recently in banana evolution, circa 640,000 years ago. The two infectious eBSVs were subjected to different selective pressures and showed distinct levels of rearrangement within their final structure. In addition, the molecular phylogenies of integrated and nonintegrated BSVs enabled us to establish the phylogenetic origins of eBSGFV and eBSImV.

Identification and profiling of conserved and novel microRNAs in Laodelphax striatellus in response to rice black-streaked dwarf virus (RBSDV infection

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Jun-Min Li

2015-03-01

Full Text Available MicroRNAs (miRNAs are small non-coding endogenous RNA molecules that play important roles in various biological processes. This study examined microRNA profiles of Laodelphax striatellus using the small RNA libraries derived from virus free (VF and rice black-streaked dwarf virus (RBSDV infected (RB insects. A total of 59 mature miRNAs (46 miRNA families were identified as conserved insect miRNAs in both VF and RB libraries. Among these conserved miRNAs, 24 were derived from the two arms of 12 miRNA precursors. Nine conserved L. striatellus miRNAs were up-regulated and 12 were down-regulated in response to RBSDV infection. In addition, a total of 20 potential novel miRNA candidates were predicted in the VF and RB libraries. The miRNA transcriptome profiles and the identification of L. striatellus miRNAs differentially expressed in response to RBSDV infection will contribute to future studies to elucidate the complex miRNA-mediated regulatory network activated by pathogen challenge in insect vectors.

Genotypic variability enhances the reproducibility of an ecological study.

Science.gov (United States)

Milcu, Alexandru; Puga-Freitas, Ruben; Ellison, Aaron M; Blouin, Manuel; Scheu, Stefan; Freschet, Grégoire T; Rose, Laura; Barot, Sebastien; Cesarz, Simone; Eisenhauer, Nico; Girin, Thomas; Assandri, Davide; Bonkowski, Michael; Buchmann, Nina; Butenschoen, Olaf; Devidal, Sebastien; Gleixner, Gerd; Gessler, Arthur; Gigon, Agnès; Greiner, Anna; Grignani, Carlo; Hansart, Amandine; Kayler, Zachary; Lange, Markus; Lata, Jean-Christophe; Le Galliard, Jean-François; Lukac, Martin; Mannerheim, Neringa; Müller, Marina E H; Pando, Anne; Rotter, Paula; Scherer-Lorenzen, Michael; Seyhun, Rahme; Urban-Mead, Katherine; Weigelt, Alexandra; Zavattaro, Laura; Roy, Jacques

2018-02-01

Many scientific disciplines are currently experiencing a 'reproducibility crisis' because numerous scientific findings cannot be repeated consistently. A novel but controversial hypothesis postulates that stringent levels of environmental and biotic standardization in experimental studies reduce reproducibility by amplifying the impacts of laboratory-specific environmental factors not accounted for in study designs. A corollary to this hypothesis is that a deliberate introduction of controlled systematic variability (CSV) in experimental designs may lead to increased reproducibility. To test this hypothesis, we had 14 European laboratories run a simple microcosm experiment using grass (Brachypodium distachyon L.) monocultures and grass and legume (Medicago truncatula Gaertn.) mixtures. Each laboratory introduced environmental and genotypic CSV within and among replicated microcosms established in either growth chambers (with stringent control of environmental conditions) or glasshouses (with more variable environmental conditions). The introduction of genotypic CSV led to 18% lower among-laboratory variability in growth chambers, indicating increased reproducibility, but had no significant effect in glasshouses where reproducibility was generally lower. Environmental CSV had little effect on reproducibility. Although there are multiple causes for the 'reproducibility crisis', deliberately including genetic variability may be a simple solution for increasing the reproducibility of ecological studies performed under stringently controlled environmental conditions.

CAX a software for automated spectrum analysis

Energy Technology Data Exchange (ETDEWEB)

Zahn, Guilherme S.; Genezini, Frederico A., E-mail: gzahn@ipen.br [Instituto de Pesquisas Energeticas e Nucleares (CRPq/IPEN/CNEN-SP), Sao Paulo, SP (Brazil). Centro do Reator de Pesquisas

2017-11-01

In this work, the scripting capabilities of Genie-2000 were used to develop a software that automatically analyses all spectrum files in either Ortec's CHN or Canberra's MCA or CNF formats in a folder, generating two output files: a print-ready text le (.DAT) and a Comma-Separated Values (.CSV) le which can be easily imported in any major spreadsheet software. This software, named CAX ('Convert and Analyse for eXcel'), uses Genie-2000's functions to import spectrum files into Genie's native CNF format and analyze the converted spectra. The software can also, if requested, import energy and FWHM calibrations from a stored calibrated spectrum. The print-ready output le (.DAT) is generated by Genie-2000 using a customized script, and the CSV le is generated by a custom-built DAT2CSV software which generates a CSV le that complies to the Brazilian standards, with commas as a decimal indicator and semicolons as eld separators. This software is already used in the daily routines in IPEN's Neutron Activation Laboratory, greatly reducing the time required for sample analyses, as well as reducing the possibility of transcription errors. (author)

Electromagnetic contribution to charge symmetry violation in parton distributions

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X.G. Wang

2016-02-01

Full Text Available We report a calculation of the combined effect of photon radiation and quark mass differences on charge symmetry violation (CSV in the parton distribution functions of the nucleon. Following a recent suggestion of Martin and Ryskin, the initial photon distribution is calculated in terms of coherent radiation from the proton as a whole, while the effect of the quark mass difference is based on a recent lattice QCD simulation. The distributions are then evolved to a scale at which they can be compared with experiment by including both QCD and QED radiation. Overall, at a scale of 5 GeV2, the total CSV effect on the phenomenologically important difference between the d and u-quark distributions is some 20% larger than the value based on quark mass differences alone. In total these sources of CSV account for approximately 40% of the NuTeV anomaly.

Phylogeny of Banana Streak Virus reveals recent and repetitive endogenization in the genome of its banana host (Musa sp.).

Science.gov (United States)

Gayral, Philippe; Iskra-Caruana, Marie-Line

2009-07-01

Banana streak virus (BSV) is a plant dsDNA pararetrovirus (family Caulimoviridae, genus badnavirus). Although integration is not an essential step in the BSV replication cycle, the nuclear genome of banana (Musa sp.) contains BSV endogenous pararetrovirus sequences (BSV EPRVs). Some BSV EPRVs are infectious by reconstituting a functional viral genome. Recent studies revealed a large molecular diversity of episomal BSV viruses (i.e., nonintegrated) while others focused on BSV EPRV sequences only. In this study, the evolutionary history of badnavirus integration in banana was inferred from phylogenetic relationships between BSV and BSV EPRVs. The relative evolution rates and selective pressures (d(N)/d(S) ratio) were also compared between endogenous and episomal viral sequences. At least 27 recent independent integration events occurred after the divergence of three banana species, indicating that viral integration is a recent and frequent phenomenon. Relaxation of selective pressure on badnaviral sequences that experienced neutral evolution after integration in the plant genome was recorded. Additionally, a significant decrease (35%) in the EPRV evolution rate was observed compared to BSV, reflecting the difference in the evolution rate between episomal dsDNA viruses and plant genome. The comparison of our results with the evolution rate of the Musa genome and other reverse-transcribing viruses suggests that EPRVs play an active role in episomal BSV diversity and evolution.

Association Mapping of Quantitative Trait Loci in Spring Wheat Landraces Conferring Resistance to Bacterial Leaf Streak and Spot Blotch

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Tika B. Adhikari

2012-03-01

Full Text Available Bacterial leaf streak (BLS, caused by pv. (Smith et al. Bragard et al., and spot blotch (SB, caused by (S. Ito & Kurib. Drechs. ex Dastur, are two emerging diseases of wheat ( L.. To achieve sustainable disease management strategies and reduce yield losses, identifying new genes that confer quantitative resistance would benefit resistance breeding efforts. The main objective of this study was to use association mapping (AM with 832 polymorphic Diversity Arrays Technology (DArT markers to identify genomic regions associated with resistance to BLS and SB in 566 spring wheat landraces. From data analysis of this diverse panel of wheat accessions, we discovered five novel genomic regions significantly associated with resistance to BLS on chromosomes 1A, 4A, 4B, 6B, and 7D. Similarly, four genomic regions were found to be associated with resistance to SB on chromosomes 1A, 3B, 7B, and 7D. A high degree of linkage disequilibrium (LD decayed over short genetic distance in the set of wheat accessions studied, and some of these genomic regions appear to be involved in multiple disease resistance (MDR. These results suggest that the AM approach provides a platform for discovery of resistance conditioned by multiple genes with quantitative effects, which could be validated and deployed in wheat breeding programs.

Practical issues of retrieving isolated attosecond pulses

International Nuclear Information System (INIS)

Wang He; Chini, Michael; Khan, Sabih D; Chen, Shouyuan; Gilbertson, Steve; Feng Ximao; Mashiko, Hiroki; Chang Zenghu

2009-01-01

The attosecond streaking technique is used for the characterization of isolated extreme ultraviolet (XUV) attosecond pulses. This type of measurement suffers from low photoelectron counts in the streaked spectrogram, and is thus susceptible to shot noise. For the retrieval of few- or mono-cycle attosecond pulses, high-intensity streaking laser fields are required, which cause the energy spectrum of above-threshold ionized (ATI) electrons to overlap with that of the streaked photoelectrons. It is found by using the principal component generalized projections algorithm that the XUV attosecond pulse can accurately be retrieved for simulated and experimental spectrograms with a peak value of 50 or more photoelectron counts. Also, the minimum streaking intensity is found to be more than 50 times smaller than that required by the classical streaking camera for retrieval of pulses with a spectral bandwidth supporting 90 as transform-limited pulse durations. Furthermore, spatial variation of the streaking laser intensity, collection angle of streaked electrons and time delay jitter between the XUV pulse and streaking field can degrade the quality of the streaked spectrogram. We find that even when the XUV and streaking laser focal spots are comparable in size, the streaking electrons are collected from a 4π solid angle, or the delay fluctuates by more than the attosecond pulse duration, the attosecond pulses can still be accurately retrieved. In order to explain the insusceptibility of the streaked spectrogram to these factors, the linearity of the streaked spectrogram with respect to the streaking field is derived under the saddle point approximation.

Low Temperature Storage of Southern Rice Black-Streaked Dwarf Virus-Infected Rice Plants Cannot Sustain Virus Transmission by the Vector.

Science.gov (United States)

Liu, Danfeng; Li, Pei; Han, Yongqiang; Lei, Wenbin; Hou, Maolin

2016-02-01

Southern rice black-streaked dwarf virus (SRBSDV) is a novel virus transmitted by white-backed planthopper Sogatella furcifera (Hováth) (Hemiptera: Delphacidae). Due to low virus transmission efficiency by the planthopper, researchers are frequently confronted with shortage of viruliferous vectors or infected rice plants, especially in winter and the following spring. To find new ways to maintain virus-infected materials, viral rice plants were stored at -80°C for 45 or 140 d and evaluated as virus sources in virus transmission by the vector. SRBSDV virions were not degraded during storage at -80°C as indicated by reverse transcription-polymerase chain reaction and reverse transcription real-time PCR detection. The planthopper nymphs fed on the infected thawed plants for 48 h survived at about 40% and showed positive detection of SRBSDV, but they lost the virus after feeding for another 20 d (the circulative transmission period) on noninfected plants. Transmission electron microscope images indicated broken capsid of virions in infected thawed leaves in contrast to integrity capsid of virions in infected fresh leaves. These results show that low temperature storage of SRBSDV-infected rice plants cannot sustain virus transmission by white-backed planthopper. © The Authors 2015. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Interaction Research on the Antiviral Molecule Dufulin Targeting on Southern Rice Black Streaked Dwarf Virus P9-1 Nonstructural Protein

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Zhenchao Wang

2015-03-01

Full Text Available ern rice black streaked dwarf virus (SRBSDV causes severe harm to rice production. Unfortunately, studies on effective antiviral drugs against SRBSDV and interaction mechanism of antiviral molecule targeting on SRBSDV have not been reported. This study found dufulin (DFL, an ideal anti-SRBSDV molecule, and investigated the interactions of DFL targeting on the nonstructural protein P9-1. The biological sequence information and bonding characterization of DFL to four kinds of P9-1 protein were described with fluorescence titration (FT and microscale thermophoresis (MST assays. The sequence analysis indicated that P9-1 had highly-conserved C- and N-terminal amino acid residues and a hypervariable region that differed from 131 aa to 160 aa. Consequently, wild-type (WT-His-P9-1, 23 C-terminal residues truncated (TR-ΔC23-His-P9-1, 6 N-terminal residues truncated (TR-ΔN6-His-P9-1, and Ser138 site-directed (MU-138-His-P9-1 mutant proteins were expressed. The FT and MST assay results indicated that DFL bounded to WT-His-P9-1 with micromole affinity and the 23 C-terminal amino acids were the potential targeting site. This system, which combines a complete sequence analysis, mutant protein expression, and binding action evaluating system, could further advance the understanding of the interaction abilities between antiviral drugs and their targets.

Automap User’s Guide 2013

Science.gov (United States)

2013-06-03

chart to assist you in determining the correct method to Thesaurus Creation . Generate-Generalization Thesauri BiGrams BiGrams are two adjacent...a,alpha b,beta c,charlie x,x-ray y-yankee z, zulu a,alpha a,alpha z, zulu a,ALPHA The Comparisons Open a file Start the Thesaurus Editor from...xyz.csv file contains no concepts that are found in the abc.csv file. 145 The green lines for x,x-ray; y,yankee; z, zulu show these concepts are only

Nucleotide sequence of a chickpea chlorotic stunt virus relative that infects pea and faba bean in China.

Science.gov (United States)

Zhou, Cui-Ji; Xiang, Hai-Ying; Zhuo, Tao; Li, Da-Wei; Yu, Jia-Lin; Han, Cheng-Gui

2012-07-01

We determined the genome sequence of a new polerovirus that infects field pea and faba bean in China. Its entire nucleotide sequence (6021 nt) was most closely related (83.3% identity) to that of an Ethiopian isolate of chickpea chlorotic stunt virus (CpCSV-Eth). With the exception of the coat protein (encoded by ORF3), amino acid sequence identities of all gene products of this virus to those of CpCSV-Eth and other poleroviruses were Polerovirus, and the name pea mild chlorosis virus is proposed.

Transcriptome of the Plant Virus Vector Graminella nigrifrons, and the Molecular Interactions of Maize fine streak rhabdovirus Transmission

Science.gov (United States)

Chen, Yuting; Cassone, Bryan J.; Bai, Xiaodong; Redinbaugh, Margaret G.; Michel, Andrew P.

2012-01-01

Background Leafhoppers (Hemiptera: Cicadellidae) are plant-phloem feeders that are known for their ability to vector plant pathogens. The black-faced leafhopper (Graminella nigrifrons) has been identified as the only known vector for the Maize fine streak virus (MFSV), an emerging plant pathogen in the Rhabdoviridae. Within G. nigrifrons populations, individuals can be experimentally separated into three classes based on their capacity for viral transmission: transmitters, acquirers and non-acquirers. Understanding the molecular interactions between vector and virus can reveal important insights in virus immune defense and vector transmission. Results RNA sequencing (RNA-Seq) was performed to characterize the transcriptome of G. nigrifrons. A total of 38,240 ESTs of a minimum 100 bp were generated from two separate cDNA libraries consisting of virus transmitters and acquirers. More than 60% of known D. melanogaster, A. gambiae, T. castaneum immune response genes mapped to our G. nigrifrons EST database. Real time quantitative PCR (RT-qPCR) showed significant down-regulation of three genes for peptidoglycan recognition proteins (PGRP – SB1, SD, and LC) in G. nigrifrons transmitters versus control leafhoppers. Conclusions Our study is the first to characterize the transcriptome of a leafhopper vector species. Significant sequence similarity in immune defense genes existed between G. nigrifrons and other well characterized insects. The down-regulation of PGRPs in MFSV transmitters suggested a possible role in rhabdovirus transmission. The results provide a framework for future studies aimed at elucidating the molecular mechanisms of plant virus vector competence. PMID:22808205

Transcriptome of the plant virus vector Graminella nigrifrons, and the molecular interactions of maize fine streak rhabdovirus transmission.

Directory of Open Access Journals (Sweden)

Yuting Chen

Full Text Available BACKGROUND: Leafhoppers (HEmiptera: Cicadellidae are plant-phloem feeders that are known for their ability to vector plant pathogens. The black-faced leafhopper (Graminella nigrifrons has been identified as the only known vector for the Maize fine streak virus (MFSV, an emerging plant pathogen in the Rhabdoviridae. Within G. nigrifrons populations, individuals can be experimentally separated into three classes based on their capacity for viral transmission: transmitters, acquirers and non-acquirers. Understanding the molecular interactions between vector and virus can reveal important insights in virus immune defense and vector transmission. RESULTS: RNA sequencing (RNA-Seq was performed to characterize the transcriptome of G. nigrifrons. A total of 38,240 ESTs of a minimum 100 bp were generated from two separate cDNA libraries consisting of virus transmitters and acquirers. More than 60% of known D. melanogaster, A. gambiae, T. castaneum immune response genes mapped to our G. nigrifrons EST database. Real time quantitative PCR (RT-qPCR showed significant down-regulation of three genes for peptidoglycan recognition proteins (PGRP - SB1, SD, and LC in G. nigrifrons transmitters versus control leafhoppers. CONCLUSIONS: Our study is the first to characterize the transcriptome of a leafhopper vector species. Significant sequence similarity in immune defense genes existed between G. nigrifrons and other well characterized insects. The down-regulation of PGRPs in MFSV transmitters suggested a possible role in rhabdovirus transmission. The results provide a framework for future studies aimed at elucidating the molecular mechanisms of plant virus vector competence.

The effect of strong pitch angle scattering on the use of artificial auroral streaks for echo detection - Echo 5

International Nuclear Information System (INIS)

Swanson, R.L.; Steffen, J.E.; Winckler, J.R.

1986-01-01

During the Echo 5 experiment launched 13 November 1979 from the Poker Flat Research Range (Fairbanks, Alaska), a 0.75 A, 37 keV electron beam was injected both up and down the field line to test the use of optical and X-ray methods to detect the beam as it interacted with the atmosphere below the rocket for both the downward injections (markers) and the upward injected electrons which mirrored at the Southern Hemisphere and returned echoes. The artificial auroral streaks created by the markers were easily visible on the ground TV system but the large intensity of photons produced around the rocket masked any response to the markers by the on-board photometers and X-ray detectors. No echoes were detected with any of the detection systems although the power in some of the upward injections was 7.6 times the power in a detected downward injection thus setting an upper limit on the loss-cone echo flux. The magnitude of the bounce averaged pitch angle diffusion coefficient necessary to explain the lack of observable echoes was found to be 4 x 10 -4 S -1 . It was found that an equatorial wave electric field of 11 mVm -1 would account for the lack of echoes. Such fields should cause strong pitch angle scattering of up to 10 keV natural electrons and thus be consistent with the presence of diffuse aurora on the Echo 5 trajectory. (author)

8987Array-Chromosome - RMOS | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available List Contact us RMOS 8987Array-Chromosome Data detail Data name 8987Array-Chromosome DOI 10.18908/lsdba.nbdc...00194-008 Description of data contents Position information of the clone of Rice8987 Array (f_array) on chromoso...mes Data file File name: rmos_8987array_chromosome.csv.zip File URL: ftp://ftp.biosciencedbc.jp/archive/...rmos/LATEST/rmos_8987array_chromosome.csv.zip File size: 96.5 KB Simple search UR...L http://togodb.biosciencedbc.jp/togodb/view/rmos_8987array_chromosome#en Data acquisition method - Data ana

Molecular characterization and evolutionary analysis of soybean mosaic virus infecting Pinellia ternata in China.

Science.gov (United States)

Sun, Haohua; ShenTu, Susu; Xue, Feng; Duns, Greg; Chen, Jishuang

2008-02-01

Twenty-nine Pinellia ternata specimens were collected from representative areas in China, including the major production provinces of Zhejiang, Henan, Shanxi, Hunan, Shandong and Hubei. Seven isolates related to soybean mosaic virus (SMV), which could be pathogenic on P. ternata and some soybean [Glycine max (L.) Merr.] cultivars, were detected using double antibody sandwich immunosorbent assay (DAS-ELISA) and RT-PCR amplification performed with degenerate primer of potyviruses. It is revealed that the common potyvirus infecting P. ternata is, indeed, only SMVs rather than Dasheen mosaic virus (DsMV) as previously reported. Further molecular phylogenetic analysis of the coat protein (CP) genes of these SMV isolates from P. ternata and G. max, along with some other potyvirus members, such as DsMV and Watermelon mosaic virus (WMV) reconstructed the evolutionary route on both nucleotide and amino acid levels. Similarity and homology of nucleotide sequences for SMV CP genes demonstrated high host correlation and low partial habitat correlation, while those of amino acid sequences also showed that the host correlation was more notable than the habitat correlation. The amino acid sequence of conserved region within CP determines the main function, which shows high homology between species. This study outspreaded from the viruses themselves and their relationship to the infected hosts and revealed the evolutionary strategies, especially the rapid variation or recombination of SMV of P. ternata, in order to adapt itself naturally to the special host.

Antiviral activity of Thuja orientalis extracts against watermelon mosaic virus (WMV) on Citrullus lanatus.

Science.gov (United States)

Elbeshehy, Esam K F; Metwali, Ehab M R; Almaghrabi, Omar A

2015-03-01

Watermelon mosaic potyvirus (WMV) is considered as an important virus infecting watermelon and causing adverse effects on crop productivity. To overcome this problem one of the main objectives of plant breeders is to make these strains less effective in the ability to infect plants by treatment with plant extracts. Due to the advantages of plant tissue culture, in vitro, in the process of the selection of different cultivars under biotic stress, this study was conducted to achieve this aim by evaluating the effect of three concentrations of Thuja extract on the multiplication of WMV in watermelon by measuring callus fresh weight and soluble proteins (mg g(-1) fresh weight) of healthy and infected hypocotyl explants. Also, WMV was isolated from naturally infected watermelon and characterized as potyvirus by serological and molecular analyses. The isolated virus gave a positive reaction with WMV antiserum compared with other antibodies of CMV, ZYMV and SqMV using DAS-ELISA. RT-PCR, with the specific primer for WMV-cp. gene, yielded 825 base pair DNA fragments. The results that belong to soluble protein analysis indicated that infected hypocotyl explants treated with 6 g L(-1) recorded the highest rate in the number of soluble protein bands compared with the rest of treatments. As a conclusion of these results, we can recommend to apply the Thuja extract at 6 g L(-1) as a optimum dosage to decrease the infection caused by watermelon mosaic potyvirus.

Transgenic tobacco plants carrying the non-structural P3 gene of potato virus A

Czech Academy of Sciences Publication Activity Database

Nováková, S.; Mazúrová, Ľ.; Čeřovská, Noemi; šubr, Z. W.

2005-01-01

Roč. 49, č. 4 (2005), s. 593-598 ISSN 0006-3134 Institutional research plan: CEZ:AV0Z5038910 Keywords : potyvirus * Agrobacterium tumefaciens * Nicotiana tabacum Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 0.792, year: 2005

Behavior of occurrence of Banana Streak virus in in vitro propagated plants from cultivars of Musa hybrids FHIA-20 and FHIA-21

Directory of Open Access Journals (Sweden)

Orelvis Portal

2004-07-01

Full Text Available The losses taken place by the black and yellow Sigatoka have impelled the introduction to the country of the tetraploid hybrids from FHIA, however, at the present time, the high incidence of Banana Streak Virus in these hybrids is well known. To evaluate the effect of the micropropagatión process, on the fluctuations of the viral concentration in the tissue, they were introduced to the in vitro propagation positive and negative plants serologically tested of the cultivars FHIA 20 and 21, previously indexed in field (DAS-ELISA, later on they passed to phase of adaptation to evaluate the derived results of the diagnosis tests carried out after 3-6 months of transplanted. As a result of the DAS-ELISA carried out to the plants in phase of adaptation (37 22.2 % of the negative plants, indexed in field, was positive, while 68.4 % of the positive plants, indexed in field, was negative, in both cases all the plants were positive to the diagnosis for PCR. In some cases, given the implication of the obtained results, was used the ISEM as technique of diagnostic, for the corroboration of the same ones. Key Words: badnavirus, diagnostic, in vitro culture, Musa

A numerical algorithm to evaluate the transient response for a synchronous scanning streak camera using a time-domain Baum–Liu–Tesche equation

Energy Technology Data Exchange (ETDEWEB)

Pei, Chengquan [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi’an 710049 (China); Tian, Jinshou [Xi' an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi' an 710119 (China); Wu, Shengli, E-mail: slwu@mail.xjtu.edu.cn [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi’an 710049 (China); He, Jiai [School of Computer and Communication, Lanzhou University of Technology, Lanzhou, Gansu 730050 (China); Liu, Zhen [Key Laboratory for Physical Electronics and Devices of the Ministry of Education, Xi' an Jiaotong University, Xi’an 710049 (China)

2016-10-01

The transient response is of great influence on the electromagnetic compatibility of synchronous scanning streak cameras (SSSCs). In this paper we propose a numerical method to evaluate the transient response of the scanning deflection plate (SDP). First, we created a simplified circuit model for the SDP used in an SSSC, and then derived the Baum–Liu–Tesche (BLT) equation in the frequency domain. From the frequency-domain BLT equation, its transient counterpart was derived. These parameters, together with the transient-BLT equation, were used to compute the transient load voltage and load current, and then a novel numerical method to fulfill the continuity equation was used. Several numerical simulations were conducted to verify this proposed method. The computed results were then compared with transient responses obtained by a frequency-domain/fast Fourier transform (FFT) method, and the accordance was excellent for highly conducting cables. The benefit of deriving the BLT equation in the time domain is that it may be used with slight modifications to calculate the transient response and the error can be controlled by a computer program. The result showed that the transient voltage was up to 1000 V and the transient current was approximately 10 A, so some protective measures should be taken to improve the electromagnetic compatibility.

A numerical algorithm to evaluate the transient response for a synchronous scanning streak camera using a time-domain Baum–Liu–Tesche equation

International Nuclear Information System (INIS)

Pei, Chengquan; Tian, Jinshou; Wu, Shengli; He, Jiai; Liu, Zhen

2016-01-01

The transient response is of great influence on the electromagnetic compatibility of synchronous scanning streak cameras (SSSCs). In this paper we propose a numerical method to evaluate the transient response of the scanning deflection plate (SDP). First, we created a simplified circuit model for the SDP used in an SSSC, and then derived the Baum–Liu–Tesche (BLT) equation in the frequency domain. From the frequency-domain BLT equation, its transient counterpart was derived. These parameters, together with the transient-BLT equation, were used to compute the transient load voltage and load current, and then a novel numerical method to fulfill the continuity equation was used. Several numerical simulations were conducted to verify this proposed method. The computed results were then compared with transient responses obtained by a frequency-domain/fast Fourier transform (FFT) method, and the accordance was excellent for highly conducting cables. The benefit of deriving the BLT equation in the time domain is that it may be used with slight modifications to calculate the transient response and the error can be controlled by a computer program. The result showed that the transient voltage was up to 1000 V and the transient current was approximately 10 A, so some protective measures should be taken to improve the electromagnetic compatibility.

Estratégias de Criação de Valor Compartilhado a Serem Adotadas Diante de Cenários Prospectados para a Indústria da Construção Civil no Ceará

Directory of Open Access Journals (Sweden)

Mirele Cavalcante da Silva

2016-12-01

Full Text Available Devido à repercussão no mundo empresarial sobre o desenvolvimento sustentável, observou-se um setor que impacta diretamente nos resultados de negócios e resultados sociais. A indústria da construção civil é um setor que exerce grande influência no crescimento e desenvolvimento de um país, gerando grande impacto econômico, social, cultural e ambiental sendo fundamental para a sustentabilidade do futuro. Diante desse contexto, esta pesquisa tem como objetivo geral identificar como a indústria da construção civil deverá se posicionar frente ao mercado de criação de valor compartilhado para tornar-se mais competitiva. Esta pesquisa classifica-se como descritiva, com uma fase teórica e outra empírica de natureza qualitativa. Para tanto, foi realizada uma pesquisa bibliográfica e entrevistas exploratórias com cinco especialistas para identificar práticas de criação de valor compartilhado (CSV da indústria da construção civil no Estado do Ceará conforme modelo proposto por Porter e Kramer (2011. Após isso, foram coletados dados de 22 empresas afim de identificar o nível de CSV e o perfil das empresas que já se inserem no modelo CSV. A análise dos dados permitiu evidenciar que a indústria da construção civil no Estado do Ceará já está inserida no que se refere a CSV, realizando práticas moderadas, destacando-se com estas práticas as médias empresas. Quanto ao nível de CSV precisa aprofundar-se especificamente no nível 3 (permite o desenvolvimento de cluster. Por fim, como recomendações para esta indústria foram listadas 17 estratégias de cunho socialmente responsáveis, sustentáveis e empresariais que buscou contribuir com ações norteadoras para consolidação de uma construção sustentável.

Identification and Molecular Analysis of Bean common mosaic virus (BCMV and Bean common mosaic necrosis virus (BCMNV in Mazandaran Province

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Z. Moradi

2016-06-01

Full Text Available Introduction: Among legume crops, common bean (Phaseolus vulgaris L. is one of the most important worldwide crops, because of its cultivation area and nutritional value. The closely related potyviruses Bean common mosaic virus (BCMV and Bean common mosaic necrosis virus (BCMNV are the most common and most destructive viruses that infect common beans throughout the world. The viruses induced similar symptoms in numerous bean genotypes, including mosaic, leaf distortion, stunting, and lethal necrosis. Like all potyviruses, BCMV and BCMNV have non-enveloped flexuous filamentous virions of 750 nm long and 11–13 nm wide, which encapsidate a single-stranded, positive-sense RNA molecule of approximately 10,000 nt long. Both are naturally transmitted by aphids in a non-persistent manner and by seed, which explains their worldwide distribution. These viruses are major constraints on bean production and can cause serious crop losses. Mazanadaran province in north of Iran is one of the major producing areas of legumes, so identification of these viruses is a concern. However, so far, no studies have been done with these viruses in this province. The aim of this research was to study the existence of BCMV and BCMNV in research areas and determining of their phylogenetic relationship. Polymerase chain reaction (PCR with degenerate primers for conserved sequences of the viral genomes has facilitated the rapid detection of many potyviruses and enabled partial genomic sequencing. In the absence of complete genomic sequences of potyviruses, CI-coding region is more suitable for diagnostic and taxonomy purposes, rather than the coat protein (CP usually used. The CI gene most accurately reflects the taxonomic status according to the complete ORF. Materials and Methods: From July to September 2013 and 2014, a total of 50 leaf samples of beans showing virus symptoms were collected from different bean fields in Mazandaran province. Total RNA was extracted from all

Introgression of chromosome segments from multiple alien species in wheat breeding lines with wheat streak mosaic virus resistance.

Science.gov (United States)

Ali, N; Heslop-Harrison, Js Pat; Ahmad, H; Graybosch, R A; Hein, G L; Schwarzacher, T

2016-08-01

Pyramiding of alien-derived Wheat streak mosaic virus (WSMV) resistance and resistance enhancing genes in wheat is a cost-effective and environmentally safe strategy for disease control. PCR-based markers and cytogenetic analysis with genomic in situ hybridisation were applied to identify alien chromatin in four genetically diverse populations of wheat (Triticum aestivum) lines incorporating chromosome segments from Thinopyrum intermedium and Secale cereale (rye). Out of 20 experimental lines, 10 carried Th. intermedium chromatin as T4DL*4Ai#2S translocations, while, unexpectedly, 7 lines were positive for alien chromatin (Th. intermedium or rye) on chromosome 1B. The newly described rye 1RS chromatin, transmitted from early in the pedigree, was associated with enhanced WSMV resistance. Under field conditions, the 1RS chromatin alone showed some resistance, while together with the Th. intermedium 4Ai#2S offered superior resistance to that demonstrated by the known resistant cultivar Mace. Most alien wheat lines carry whole chromosome arms, and it is notable that these lines showed intra-arm recombination within the 1BS arm. The translocation breakpoints between 1BS and alien chromatin fell in three categories: (i) at or near to the centromere, (ii) intercalary between markers UL-Thin5 and Xgwm1130 and (iii) towards the telomere between Xgwm0911 and Xbarc194. Labelled genomic Th. intermedium DNA hybridised to the rye 1RS chromatin under high stringency conditions, indicating the presence of shared tandem repeats among the cereals. The novel small alien fragments may explain the difficulty in developing well-adapted lines carrying Wsm1 despite improved tolerance to the virus. The results will facilitate directed chromosome engineering producing agronomically desirable WSMV-resistant germplasm.

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Indian Academy of Sciences (India)

thought to have contributed to the successful adaptation of the potyviruses into a wide range of host ..... accounting for the P1 cytoplasmic localization. In regard to .... authors have conceding that viral proteins crucial to the viral infection cycle ...

The impact of dynamic data assimilation on the numerical simulations of the QE II cyclone and an analysis of the jet streak influencing the precyclogenetic environment

Science.gov (United States)

Manobianco, John; Uccellini, Louis W.; Brill, Keith F.; Kuo, Ying-Hwa

1992-01-01

A mesoscale numerical model is combined with a dynamic data assimilation via Newtonian relaxation, or 'nudging', to provide initial conditions for subsequent simulations of the QE II cyclone. Both the nudging technique and the inclusion of supplementary data are shown to have a large positive impact on the simulation of the QE II cyclone during the initial phase of rapid cyclone development. Within the initial development period (from 1200 to 1800 UTC 9 September 1978), the dynamic assimilation of operational and bogus data yields a coherent two-layer divergence pattern that is not well defined in the model run using only the operational data and static initialization. Diagnostic analysis based on the simulations show that the initial development of the QE II storm between 0000 UTC 9 September and 0000 UTC 10 September was embedded within an indirect circulation of an intense 300-hPa jet streak, was related to baroclinic processes extending throughout a deep portion of the troposphere, and was associated with a classic two-layer mass-divergence profile expected for an extratropical cyclone.

Voltammetric determination of arsenic in high iron and manganese groundwaters.

Science.gov (United States)

Gibbon-Walsh, Kristoff; Salaün, Pascal; Uroic, M Kalle; Feldmann, Joerg; McArthur, John M; van den Berg, Constant M G

2011-09-15

Determination of the speciation of arsenic in groundwaters, using cathodic stripping voltammetry (CSV), is severely hampered by high levels of iron and manganese. Experiments showed that the interference is eliminated by addition of EDTA, making it possible to determine the arsenic speciation on-site by CSV. This work presents the CSV method to determine As(III) in high-iron or -manganese groundwaters in the field with only minor sample treatment. The method was field-tested in West-Bengal (India) on a series of groundwater samples. Total arsenic was subsequently determined after acidification to pH 1 by anodic stripping voltammetry (ASV). Comparative measurements by ICP-MS as reference method for total As, and by HPLC for its speciation, were used to corroborate the field data in stored samples. Most of the arsenic (78±0.02%) was found to occur as inorganic As(III) in the freshly collected waters, in accordance with previous studies. The data shows that the modified on-site CSV method for As(III) is a good measure of water contamination with As. The EDTA was also found to be effective in stabilising the arsenic speciation for longterm sample storage at room temperature. Without sample preservation, in water exposed to air and sunlight, the As(III) was found to become oxidised to As(V), and Fe(II) oxidised to Fe(III), removing the As(V) by adsorption on precipitating Fe(III)-hydroxides within a few hours. Copyright © 2011 Elsevier B.V. All rights reserved.

CREATING COMPETITIVE ADVANTAGES – THE EUROPEAN CSR-STRATEGY COMPARED WITH PORTER'S AND KRAMER'S SHARED VALUE APPROACH

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Regina Moczadlo

2015-07-01

Full Text Available In 2011 the European Commission changed the definition and strategy for corporate social responsibility (CSR with the creation of shared value as one core element of the new concept. In the same year Porter and Kramer published in the Harvard Business Review their approach of creating shared value (CSV as core element of long-term business strategies. The starting point of both approaches is the societal legitimation of enterprises to do business. CSR respective CSV are evaluated to be a mean for reaching this legitimation and to further to gain back trust of the society that was lost during the financial crisis. This paper describes the two concepts and analyzes similarities and differences. From the overall aim and intention the EU concept has a wider focus and much higher requirements for enterprises. The European Commission assesses CSR as a measure for business to contribute to inclusive growth, employment and well-being of the society. Hence, companies have to take into account economic, social and environmental targets further include ethical, human rights and consumer concerns when developing their long-term business strategy. CSV of Porter and Kramer also goes beyond the pure business case of CSR because CSV also is defined as a long-term measure which has to be integrated systematically in the strategic core business of companies. The Commission see shareholder as just one common group of a company's stakeholder and gives no preference to them. For Porter and Kramer the simultaneous creation of profit and societal value are decisive.

Proteomics offers insight to the mechanism behind Pisum sativum L. response to pea seed-borne mosaic virus (PSbMV)

Czech Academy of Sciences Publication Activity Database

Černá, H.; Černý, M.; Habanová, H.; Šafářová, D.; Abushamsiya, K.; Navrátil, M.; Brzobohatý, Břetislav

2017-01-01

Roč. 153, FEB2017 (2017), s. 78-88 ISSN 1874-3919 Institutional support: RVO:68081707 Keywords : Proteome * Pea seed-borne mosaic virus PSbMV * Potyvirus Subject RIV: CE - Biochemistry OBOR OECD: Biochemistry and molecular biology Impact factor: 3.914, year: 2016

Assessment of reference gene stability in Rice stripe virus and Rice black streaked dwarf virus infection rice by quantitative Real-time PCR.

Science.gov (United States)

Fang, Peng; Lu, Rongfei; Sun, Feng; Lan, Ying; Shen, Wenbiao; Du, Linlin; Zhou, Yijun; Zhou, Tong

2015-10-24

Stably expressed reference gene(s) normalization is important for the understanding of gene expression patterns by quantitative Real-time PCR (RT-qPCR), particularly for Rice stripe virus (RSV) and Rice black streaked dwarf virus (RBSDV) that caused seriously damage on rice plants in China and Southeast Asia. The expression of fourteen common used reference genes of Oryza sativa L. were evaluated by RT-qPCR in RSV and RBSDV infected rice plants. Suitable normalization reference gene(s) were identified by geNorm and NormFinder algorithms. UBQ 10 + GAPDH and UBC + Actin1 were identified as suitable reference genes for RT-qPCR normalization under RSV and RBSDV infection, respectively. When using multiple reference genes, the expression patterns of OsPRIb and OsWRKY, two virus resistance genes, were approximately similar with that reported previously. Comparatively, by using single reference gene (TIP41-Like), a weaker inducible response was observed. We proposed that the combination of two reference genes could obtain more accurate and reliable normalization of RT-qPCR results in RSV- and RBSDV-infected plants. This work therefore sheds light on establishing a standardized RT-qPCR procedure in RSV- and RBSDV-infected rice plants, and might serve as an important point for discovering complex regulatory networks and identifying genes relevant to biological processes or implicated in virus.

A requirement for FGF signalling in the formation of primitive streak-like intermediates from primitive ectoderm in culture.

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Zhiqiang Zheng

Full Text Available BACKGROUND: Embryonic stem (ES cells hold considerable promise as a source of cells with therapeutic potential, including cells that can be used for drug screening and in cell replacement therapies. Differentiation of ES cells into the somatic lineages is a regulated process; before the promise of these cells can be realised robust and rational methods for directing differentiation into normal, functional and safe cells need to be developed. Previous in vivo studies have implicated fibroblast growth factor (FGF signalling in lineage specification from pluripotent cells. Although FGF signalling has been suggested as essential for specification of mesoderm and endoderm in vivo and in culture, the exact role of this pathway remains unclear. METHODOLOGY/PRINCIPAL FINDINGS: Using a culture model based on early primitive ectoderm-like (EPL cells we have investigated the role of FGF signalling in the specification of mesoderm. We were unable to demonstrate any mesoderm inductive capability associated with FGF1, 4 or 8 signalling, even when the factors were present at high concentrations, nor any enhancement in mesoderm formation induced by exogenous BMP4. Furthermore, there was no evidence of alteration of mesoderm sub-type formed with addition of FGF1, 4 or 8. Inhibition of endogenous FGF signalling, however, prevented mesoderm and favoured neural differentiation, suggesting FGF signalling was required but not sufficient for the differentiation of primitive ectoderm into primitive streak-like intermediates. The maintenance of ES cell/early epiblast pluripotent marker expression was also observed in cultures when FGF signalling was inhibited. CONCLUSIONS/SIGNIFICANCE: FGF signalling has been shown to be required for the differentiation of primitive ectoderm to neurectoderm. This, coupled with our observations, suggest FGF signalling is required for differentiation of the primitive ectoderm into the germ lineages at gastrulation.

Development of ZYMV-resistant watermelon lines using molecular markers for the eukaryotic elongation factor eIF4E together with phenotypic evaluation

Science.gov (United States)

The aphid-transmitted potyviruses of watermelon, including papaya ringspot virus (PRSV), watermelon mosaic virus (WMV), and zucchini yellow mosaic virus (ZYMV) cause serious damage to the watermelon crop throughout the world. The United States Plant Introduction (PI) 595203 is resistant to ZYMV-FL a...

Beet mosaic virus : epidemiology and damage

NARCIS (Netherlands)

Dusi, A.

1999-01-01

Overview:

The aim of the studies described in this thesis was to obtain a thorough understanding of the main factors determining the spread of a potyvirus in a high plant density crop. The factors studied included the relationships between

Visualization of resistance responses in Phaseolus vulgaris using reporter tagged clones of Bean common mosaic virus

DEFF Research Database (Denmark)

Naderpour, Masoud; Johansen, Ida Elisabeth

2011-01-01

Reporter tagged virus clones can provide detailed information on virus–host interactions. In Phaseolus vulgaris (bean), four recessive and one dominant gene are known to control infection by strains of the potyvirus species Bean common mosaic virus (BCMV). To study the interactions between BCMV...

Engineering resistance against potato virus Y

NARCIS (Netherlands)

Vlugt, van der R.A.A.

1993-01-01

Potato virus Y is the type species of the potyvirus genus, the largest genus of the plant virus family Potyviridae. The virus causes serious problems in the cultivation of several Solanaceous crops and although certain poly- and monogenic resistances are available,

Deep Joint Rain Detection and Removal from a Single Image

OpenAIRE

Yang, Wenhan; Tan, Robby T.; Feng, Jiashi; Liu, Jiaying; Guo, Zongming; Yan, Shuicheng

2016-01-01

In this paper, we address a rain removal problem from a single image, even in the presence of heavy rain and rain streak accumulation. Our core ideas lie in the new rain image models and a novel deep learning architecture. We first modify an existing model comprising a rain streak layer and a background layer, by adding a binary map that locates rain streak regions. Second, we create a new model consisting of a component representing rain streak accumulation (where individual streaks cannot b...

One year follow-up of contrast sensitivity following conventional laser in situ keratomileusis and laser epithelial keratomileusis.

Science.gov (United States)

Townley, Deirdre; Kirwan, Caitriona; O'Keefe, Michael

2012-02-01

To determine the effect of conventional laser in situ keratomileusis (LASIK) and laser epithelial keratomileusis (LASEK) for myopia on contrast sensitivity (CS) using the Pelli-Robson and Vector Vision CSV-1000E CS tests. A prospective, comparative study was conducted on 36 eyes of 36 patients with myopia undergoing LASIK (18 eyes) and LASEK (18 eyes). Surgery was performed using the Technolas 217z laser (Bausch & Lomb). CS was recorded preoperatively and at 3, 6 and 12 months postoperatively. No statistically significant difference was found in LogMAR uncorrected visual acuity post-LASIK (-0.02 ± 0.16) and LASEK (-0.04 ± 0.14). Using the Pelli-Robson, CS was significantly lower in the LASIK group 3 and 6 months postoperatively. No significant postoperative reduction in CS was observed in either treatment group. Using the CSV-1000E test, CS was significantly reduced post-LASIK at 3 (p = 0.05) and 6 (p = 0.05) cycles/degree under photopic conditions. No significant postoperative change occurred in the LASEK group under photopic or scotopic conditions. There was no significant difference in postoperative CS between the LASIK and LASEK groups at 3, 6, 12 or 18 cycles/degree using the CSV-1000E test. One year postoperatively, there was no difference in CS between both treatment groups using the Pelli-Robson and CSV-1000E tests. CS was reduced postoperatively in the LASIK group at the lower spatial frequencies under photopic conditions. No postoperative change was detected in CS following LASIK or LASEK using the Pelli-Robson test. © 2010 The Authors. Journal compilation © 2010 Acta Ophthalmol.

The climate-smart village approach: framework of an integrative strategy for scaling up adaptation options in agriculture

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Pramod K. Aggarwal

2018-03-01

Full Text Available Increasing weather risks threaten agricultural production systems and food security across the world. Maintaining agricultural growth while minimizing climate shocks is crucial to building a resilient food production system and meeting developmental goals in vulnerable countries. Experts have proposed several technological, institutional, and policy interventions to help farmers adapt to current and future weather variability and to mitigate greenhouse gas (GHG emissions. This paper presents the climate-smart village (CSV approach as a means of performing agricultural research for development that robustly tests technological and institutional options for dealing with climatic variability and climate change in agriculture using participatory methods. It aims to scale up and scale out the appropriate options and draw out lessons for policy makers from local to global levels. The approach incorporates evaluation of climate-smart technologies, practices, services, and processes relevant to local climatic risk management and identifies opportunities for maximizing adaptation gains from synergies across different interventions and recognizing potential maladaptation and trade-offs. It ensures that these are aligned with local knowledge and link into development plans. This paper describes early results in Asia, Africa, and Latin America to illustrate different examples of the CSV approach in diverse agroecological settings. Results from initial studies indicate that the CSV approach has a high potential for scaling out promising climate-smart agricultural technologies, practices, and services. Climate analog studies indicate that the lessons learned at the CSV sites would be relevant to adaptation planning in a large part of global agricultural land even under scenarios of climate change. Key barriers and opportunities for further work are also discussed.

78 FR 9851 - Importation of Plants for Planting

Science.gov (United States)

2013-02-12

... address the presence of plum pox potyvirus in that country; and to provide for the importation of Dianthus... Dianthus spp. (carnation, sweet-william) from any country or locality except Canada. Only two countries... United States. In addition, with very limited exceptions, importations of Dianthus spp. require postentry...

The helper component-proteinase of cowpea aphid-borne mosaic virus

NARCIS (Netherlands)

Mlotshwa, S.

2000-01-01

Cowpea aphid-borne mosaic potyvirus causes severe yield losses in cowpea, an important legume crop in semi-arid regions of Africa. We have elucidated the genomic sequence of the virus and subsequently focused our attention on the so-called helper component-proteinase (HC-Pro), a

Sharka: The Past, The Present and The Future

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Boris Krska

2012-11-01

Full Text Available Members the Potyviridae family belong to a group of plant viruses that are causing devastating plant diseases with a significant impact on agronomy and economics. Plum pox virus (PPV, as a causative agent of sharka disease, is widely discussed. The understanding of the molecular biology of potyviruses including PPV and the function of individual proteins as products of genome expression are quite necessary for the proposal the new antiviral strategies. This review brings to view the members of Potyviridae family with respect to plum pox virus. The genome of potyviruses is discussed with respect to protein products of its expression and their function. Plum pox virus distribution, genome organization, transmission and biochemical changes in infected plants are introduced. In addition, techniques used in PPV detection are accentuated and discussed, especially with respect to new modern techniques of nucleic acids isolation, based on the nanotechnological approach. Finally, perspectives on the future of possibilities for nanotechnology application in PPV determination/identification are outlined.

Charge symmetry violation in the electromagnetic form factors of the proton

International Nuclear Information System (INIS)

Shanahan, P.E.; Thomas, A.W.; Young, R.D.; Zanotti, J.M.; Pleiter, D.; Stueben, H.

2015-03-01

Experimental tests of QCD through its predictions for the strange-quark content of the proton have been drastically restricted by our lack of knowledge of the violation of charge symmetry (CSV). We find unexpectedly tiny CSV in the proton's electromagnetic form factors by performing the first extraction of these quantities based on an analysis of lattice QCD data. The resulting values are an order of magnitude smaller than current bounds on proton strangeness from parity violating electron-proton scattering experiments. This result paves the way for a new generation of experimental measurements of the proton's strange form factors to challenge the predictions of QCD.

Wadeable Streams Assessment Data

Science.gov (United States)

The Wadeable Streams Assessment (WSA) is a first-ever statistically-valid survey of the biological condition of small streams throughout the U.S. The U.S. Environmental Protection Agency (EPA) worked with the states to conduct the assessment in 2004-2005. Data for each parameter sampled in the Wadeable Streams Assessment (WSA) are available for downloading in a series of files as comma separated values (*.csv). Each *.csv data file has a companion text file (*.txt) that lists a dataset label and individual descriptions for each variable. Users should view the *.txt files first to help guide their understanding and use of the data.

Characterization of rice black-streaked dwarf virus- and rice stripe virus-derived siRNAs in singly and doubly infected insect vector Laodelphax striatellus.

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Junmin Li

Full Text Available Replication of RNA viruses in insect cells triggers an antiviral defense that is mediated by RNA interference (RNAi which generates viral-derived small interfering RNAs (siRNAs. However, it is not known whether an antiviral RNAi response is also induced in insects by reoviruses, whose double-stranded RNA genome replication is thought to occur within core particles. Deep sequencing of small RNAs showed that when the small brown planthopper (Laodelphax striatellus was infected by Rice black-streaked dwarf virus (RBSDV (Reoviridae; Fijivirus, more viral-derived siRNAs accumulated than when the vector insect was infected by Rice stripe virus (RSV, a negative single-stranded RNA virus. RBSDV siRNAs were predominantly 21 and 22 nucleotides long and there were almost equal numbers of positive and negative sense. RBSDV siRNAs were frequently generated from hotspots in the 5'- and 3'-terminal regions of viral genome segments but these hotspots were not associated with any predicted RNA secondary structures. Under laboratory condition, L. striatellus can be infected simultaneously with RBSDV and RSV. Double infection enhanced the accumulation of particular genome segments but not viral coat protein of RBSDV and correlated with an increase in the abundance of siRNAs derived from RBSDV. The results of this study suggest that reovirus replication in its insect vector potentially induces an RNAi-mediated antiviral response.

A novel method for transmitting southern rice black-streaked dwarf virus to rice without insect vector.

Science.gov (United States)

Yu, Lu; Shi, Jing; Cao, Lianlian; Zhang, Guoping; Wang, Wenli; Hu, Deyu; Song, Baoan

2017-08-15

Southern rice black-streaked dwarf virus (SRBSDV) has spread from the south of China to the north of Vietnam in the past few years, and has severely influenced rice production. However, previous study of traditional SRBSDV transmission method by the natural virus vector, the white-backed planthopper (WBPH, Sogatella furcifera), in the laboratory, researchers are frequently confronted with lack of enough viral samples due to the limited life span of infected vectors and rice plants and low virus acquisition and inoculation efficiency by the vector. Meanwhile, traditional mechanical inoculation of virus only apply to dicotyledon because of the higher content of lignin in the leaves of the monocot. Therefore, establishing an efficient and persistent-transmitting model, with a shorter virus transmission time and a higher virus transmission efficiency, for screening novel anti-SRBSDV drugs is an urgent need. In this study, we firstly reported a novel method for transmitting SRBSDV in rice using the bud-cutting method. The transmission efficiency of SRBSDV in rice was investigated via the polymerase chain reaction (PCR) method and the replication of SRBSDV in rice was also investigated via the proteomics analysis. Rice infected with SRBSDV using the bud-cutting method exhibited similar symptoms to those infected by the WBPH, and the transmission efficiency (>80.00%), which was determined using the PCR method, and the virus transmission time (30 min) were superior to those achieved that transmitted by the WBPH. Proteomics analysis confirmed that SRBSDV P1, P2, P3, P4, P5-1, P5-2, P6, P8, P9-1, P9-2, and P10 proteins were present in infected rice seedlings infected via the bud-cutting method. The results showed that SRBSDV could be successfully transmitted via the bud-cutting method and plants infected SRBSDV exhibited the symptoms were similar to those transmitted by the WBPH. Therefore, the use of the bud-cutting method to generate a cheap, efficient, reliable supply of

'HoneySweet' plum - a valuable genetically engineered fruit-tree cultivar and germplasm resource

Science.gov (United States)

‘HoneySweet’ is a plum variety developed through genetic engineering to be highly resistant to plum pox potyvirus (PPV), the causal agent of sharka disease, that threatens stone-fruit industries world-wide and most specifically, in Europe. Field testing for over 15 years in Europe has demonstrated ...

Detecção e análise da variabilidade de seqüências do Banana streak virus (BSV em bananeiras no Brasil Detection and analysis of Banana streak virus (BSV sequences variability of banana from Brazil

Directory of Open Access Journals (Sweden)

Daniel Figueiredo

2006-06-01

Full Text Available A técnica de PCR utilizando-se "primers" degenerados para o gênero Badnavirus foi utilizada para a detecção e análise da variabilidade de seqüências do Banana streak virus (BSV provenientes de bananeiras. A partir desta metodologia seqüências do vírus puderam ser detectadas em cultivares diplóides (AA, triplóides (AAA; AAB e tetraplóides (AAAB. Foram encontrados quatro padrões de seqüência do BSV (estirpes BSVBR-1, BSVBR-2, BSVBR-3 e BSVBR-4, diferenciadas através da análise do perfil eletroforético das amostras amplificadas. A estirpe BSVBR-1 prevalece nos estados do Acre, Amazonas, Bahia, Ceará, Goiás, Minas Gerais, Piauí, Rio de Janeiro, Rondônia, Santa Catarina, e São Paulo, enquanto que, a estirpe BSVBR-2 foi encontrada em amostras oriundas do Amazonas e do Ceará. As estirpes BSVBR-3 e BSVBR-4 foram encontradas apenas no Ceará. Este trabalho revela a presença de diferentes estirpes do BSV no Brasil, bem como a existência de cultivares de bananeiras sadias e livres de seqüências virais do BSV integradas ao seu genoma.PCR assay using degenerate primers, designed to Badnavirus genus, was used to detect and analyse the variability of BSV strains sequences from banana. The virus was detected in diploid (AA, triploids (AAA; AAB and tetraploids (AAAB banana cultivars. Four BSV sequences patterns (BSVBR-1, BSVBR-2, BSVBR-3 and BSVBR-4 strains were found, and distinguished by eletrophoresis. The strain BSVBR-1 was found in the states of Acre, Amazonas, Bahia, Ceará, Goiás, Minas Gerais, Piauí, Rio de Janeiro, Rondônia, Santa Catarina and São Paulo, while BSVBR-2 strain was detected in the states of Amazonas and Ceará. BSVBR-3 and BSVBR-4 strains were found only in the state of Ceará. This work demonstrated the presence of different BSV strains in Brazil and the existence of health banana cultivars as well as cultivars free of BSV integrated sequences.

4D display of the outflow track of embryonic-chick hearts (HH 14-19) using a high speed streak mode OCT

Science.gov (United States)

Ma, Siyu; Wang, Rui; Goodwin, Richard L.; Markwald, Roger R.; Borg, Thomas K.; Runyan, Raymond B.; Gao, Zhi

2013-02-01

Congenital Heart Disease (CHD) is the most common congenital malformation in newborns in the US. Although knowledge of CHD is limited, altered hemodynamic conditions are suspected as the factor that stimulates cardiovascular cell response, resulting in the heart morphology remodeling that ultimately causes CHDs. Therefore, one of recent efforts in CHD study is to develop high-speed imaging tools to correlate the rapidly changing hemodynamic condition and the morphological adaptations of an embryonic heart in vivo. We have developed a high-speed streak mode OCT that works at the center wavelength of 830 nm and is capable of providing images (292x220 μm2) of the outflow tract of an embryonic chick heart at the rate of 1000 Hz. The modality can provide a voxel resolution in the range of 10 μm3, and the spectral resolution allows a depth range of 1.63 mm. In the study reported here, each of the 4D images of an outflow tract was recorded for 2 seconds. The recording was conducted every 2 hours (HH17 to HH18), 3 hours (HH14 to HH17), and 4 hours (HH18 to HH19). Because of the fast scan speed, there is no need for postacquisition processing such as use of gating techniques to provide a fine 3D structure. In addition, more details of the outflow tract are preserved in the recorded images. The 4D images can be used in the future to determine the role of blood flow in CHD development.

Manual versus automated streaking system in clinical microbiology laboratory: Performance evaluation of Previ Isola for blood culture and body fluid samples.

Science.gov (United States)

Choi, Qute; Kim, Hyun Jin; Kim, Jong Wan; Kwon, Gye Cheol; Koo, Sun Hoe

2018-01-04

The process of plate streaking has been automated to improve routine workflow of clinical microbiology laboratories. Although there were many evaluation reports about the inoculation of various body fluid samples, few evaluations have been reported for blood. In this study, we evaluated the performance of automated inoculating system, Previ Isola for various routine clinical samples including blood. Blood culture, body fluid, and urine samples were collected. All samples were inoculated on both sheep blood agar plate (BAP) and MacConkey agar plate (MCK) using Previ Isola and manual method. We compared two methods in aspect of quality and quantity of cultures, and sample processing time. To ensure objective colony counting, an enumeration reading reference was made through a preliminary experiment. A total of 377 nonduplicate samples (102 blood culture, 203 urine, 72 body fluid) were collected and inoculated. The concordance rate of quality was 100%, 97.0%, and 98.6% in blood, urine, and other body fluids, respectively. In quantitative aspect, it was 98.0%, 97.0%, and 95.8%, respectively. The Previ Isola took a little longer to inoculate the specimen than manual method, but the hands-on time decreased dramatically. The shortened hands-on time using Previ Isola was about 6 minutes per 10 samples. We demonstrated that the Previ Isola showed high concordance with the manual method in the inoculation of various body fluids, especially in blood culture sample. The use of Previ Isola in clinical microbiology laboratories is expected to save considerable time and human resources. © 2018 Wiley Periodicals, Inc.

Evaluación agronómica de accesiones de Capsicum del banco de germoplasma de la Universidad Nacional de Colombia Sede Palmira Agronomic evaluation of Capsicum accessions of the gene Bank of the National University of Colombia at Palmira's campus

Directory of Open Access Journals (Sweden)

Catherine Pardey Rodríguez

2009-01-01

Full Text Available En un diseño de bloques incompletos 10 x 10 con tres repeticiones se estudiaron descriptores cuantitativos relacionados con producción por planta, contenido de capsaicina y presencia de virus en 100 accesiones de Capsicum pertenecientes a la Universidad Nacional de Colombia. Las diferencias entre las accesiones fueron explicadas por el contenido de capsaicina, características asociadas con la producción por planta y características del fruto. Se encontró correlación inversa entre el contenido de capsaicina y producción; número de frutos por planta con peso de fruto. La dispersión de las accesiones en el plano cartesiano situó las variedades comerciales Cayenne, Tabasco y Habanero, en función de producción, peso y cantidad de frutos, en posiciones desventajosas con respecto a los promedios generales de las características de las otras accesiones. Cuatro accesiones superaron a Tabasco en contenido de capsaicina. Cuatro tipos de virus (potyvirus, geminivirus y cucumovirus y virus del mosaico del tabaco TMV se presentaron en el lote de evaluación. Los virus actuaron en forma conjunta; los potyvirus con los cucumovirus y TMV; los geminivirus con TMV.100 accessions from Capsicum gene Bank of the National University of Colombia at Palmira's campus, under field conditions of the experimental station at Candelaria, Cauca Valley were studied. In a design of incomplete blocks 10 x 10 with three repetitions, quantitative descriptions were evaluated. The characteristics were related with yield, capsaicin content and virus presence.The agronomic evaluation found that the differences among the accessions are explained for the capsaicin content, yield, characteristics associated and fruits characteristics associated. Inverse correlation among the capsaicin content with production, quantity of fruits for plant with weight was found. The dispersion of the accessions in the Cartesian axis placed the commercial varieties: Cayenne, Tabasco and

Transition Delay in Hypersonic Boundary Layers via Optimal Perturbations

Science.gov (United States)

Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

2016-01-01

The effect of nonlinear optimal streaks on disturbance growth in a Mach 6 axisymmetric flow over a 7deg half-angle cone is investigated in an e ort to expand the range of available techniques for transition control. Plane-marching parabolized stability equations are used to characterize the boundary layer instability in the presence of azimuthally periodic streaks. The streaks are observed to stabilize nominally planar Mack mode instabilities, although oblique Mack mode disturbances are destabilized. Experimentally measured transition onset in the absence of any streaks correlates with an amplification factor of N = 6 for the planar Mack modes. For high enough streak amplitudes, the transition threshold of N = 6 is not reached by the Mack mode instabilities within the length of the cone, but subharmonic first mode instabilities, which are destabilized by the presence of the streaks, reach N = 6 near the end of the cone. These results suggest a passive flow control strategy of using micro vortex generators to induce streaks that would delay transition in hypersonic boundary layers.

Vector-virus mutualism accelerates population increase of an invasive whitefly.

Directory of Open Access Journals (Sweden)

Min Jiu

2007-01-01

Full Text Available The relationships between plant viruses, their herbivore vectors and host plants can be beneficial, neutral, or antagonistic, depending on the species involved. This variation in relationships may affect the process of biological invasion and the displacement of indigenous species by invaders when the invasive and indigenous organisms occur with niche overlap but differ in the interactions. The notorious invasive B biotype of the whitefly complex Bemisia tabaci entered China in the late 1990s and is now the predominant or only biotype in many regions of the country. Tobacco curly shoot virus (TbCSV and Tomato yellow leaf curl China virus (TYLCCNV are two whitefly-transmitted begomoviruses that have become widespread recently in south China. We compared the performance of the invasive B and indigenous ZHJ1 whitefly biotypes on healthy, TbCSV-infected and TYLCCNV-infected tobacco plants. Compared to its performance on healthy plants, the invasive B biotype increased its fecundity and longevity by 12 and 6 fold when feeding on TbCSV-infected plants, and by 18 and 7 fold when feeding on TYLCCNV-infected plants. Population density of the B biotype on TbCSV- and TYLCCNV-infected plants reached 2 and 13 times that on healthy plants respectively in 56 days. In contrast, the indigenous ZHJ1 performed similarly on healthy and virus-infected plants. Virus-infection status of the whiteflies per se of both biotypes showed limited effects on performance of vectors on cotton, a nonhost plant of the viruses. The indirect mutualism between the B biotype whitefly and these viruses via their host plants, and the apparent lack of such mutualism for the indigenous whitefly, may contribute to the ability of the B whitefly biotype to invade, the displacement of indigenous whiteflies, and the disease pandemics of the viruses associated with this vector.

Isolation, identification and molecular characterisation of an isolate ...

African Journals Online (AJOL)

On the basis of host reactions, electron microscopy, serology, and size of the coat protein, a potyvirus infecting cucumber, squash, pumpkin and melon samples collected from farms around KZN was positively identified as ZYMV. Mechanical inoculation of test plants showed that the virus host range was limited to the ...

Construction of PVX virus-expression vector to express enterotoxin ...

African Journals Online (AJOL)

Potato X potyvirus (PVX)-based vector has been comprehensively applied in transient expression system. In order to produce the heterologous proteins more quickly and stably, the ClaI and NotI enzyme sites were introduced into the Enterotoxin fusion gene LTB-ST by polymerase chain reaction (PCR) and the LTB-ST ...

Transgenic plants expressing the coat protein gene of cowpea aphid ...

African Journals Online (AJOL)

Cowpea aphid-borne mosaic virus (CABMV) is a potyvirus that infects cowpea causing significant yield reduction. However, there is no durable natural resistance to the virus within the crop and genetic engineering for virus resistance was not possible because of a lack of an efficient, reliable and reproducible cowpea ...

Efecto agudo y retardado de siete tipos de estímulos diferentes sobre la capacidad de salto y efecto de ocho estímulos diferentes sobre la capacidad de salto y la velocidad de desplazamiento

Directory of Open Access Journals (Sweden)

Eduardo Sáez Sáez de Villarreal

2008-06-01

Full Text Available Se realizaron 3 estudios experimentales para determinar el efecto agudo y retardado de diferentes estímulos sobre la capacidad de salto (CSV y velocidad de desplazamiento (VD. En el primer estudio comprobamos el efecto de 7 tipos de estímulos de activación muscular sobre la CSV a corto y largo plazo (5 min-6 h. 12 jugadores de voleibol de 1ª división, realizaron diferentes estímulos de activación aleatoriamente. La utilización de movimientos dinámicos con cargas de alta intensidad (80-95% 1RMSP así como protocolos de calentamiento específicos para el voleibol generaron mejores efectos neuromusculares sobre las acciones explosivas realizadas a corto plazo (5 min.. Los efectos agudos positivos sobre la CSV tras una óptima activación fueron mantenidos después de largos periodos de descanso (6 horas, cuando se realizaron acciones dinámicas de alta intensidad. En el segundo estudio examinamos el efecto de tres frecuencias de entrenamiento pliométrico (1, 2 y 4 días/sem durante un programa de 7 semanas, sobre la CSV, la VD la fuerza máxima (FM y explosiva (FE. 42 estudiantes fueron aleatoriamente asignados en 4 grupos experimentales. El entrenamiento incluía saltos drop jump (DJ desde 20-40-60 cm. El tratamiento (2 días/sem, 840 saltos produjo similares mejoras en la CSV, aunque fue más eficiente (~12% y 0,014%/salto cuando se comparó con un volumen de (4 días/sem, 1.680 saltos (~18% y 0,011%/saltos. Se observaron mejoras similares en la VD en 20m y en la FM tanto utilizando un moderado o bajo como un alto volumen de entrenamiento, a pesar de que el número medio de saltos realizados por el grupo 7S (420 saltos y 14S (840 saltos fue un 25% y un 50% de los realizados por el grupo 28S (1680 saltos. En el tercer estudio examinamos el efecto retardado de 5 estímulos diferentes sobre la CSV y la VD después de 7 semanas de entrenamiento. 63 estudiantes fueron aleatoriamente asignados en 5 grupos experimentales. Se produjo una mejora

An operon for production of bioactive gibberellin A4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola.

Science.gov (United States)

Nagel, Raimund; Turrini, Paula C G; Nett, Ryan S; Leach, Jan E; Verdier, Valérie; Van Sluys, Marie-Anne; Peters, Reuben J

2017-05-01

Phytopathogens have developed elaborate mechanisms to attenuate the defense response of their host plants, including convergent evolution of complex pathways for production of the GA phytohormones, which were actually first isolated from the rice fungal pathogen Gibberella fujikuroi. The rice bacterial pathogen Xanthomonas oryzae pv. oryzicola (Xoc) has been demonstrated to contain a biosynthetic operon with cyclases capable of producing the universal GA precursor ent-kaurene. Genetic (knock-out) studies indicate that the derived diterpenoid serves as a virulence factor for this rice leaf streak pathogen, serving to reduce the jasmonic acid-mediated defense response. Here the functions of the remaining genes in the Xoc operon are elucidated and the distribution of the operon in X. oryzae is investigated in over 100 isolates. The Xoc operon leads to production of the bioactive GA 4 , an additional step beyond production of the penultimate precursor GA 9 mediated by the homologous operons recently characterized from rhizobia. Moreover, this GA biosynthetic operon was found to be widespread in Xoc (> 90%), but absent in the other major X. oryzae pathovar. These results indicate selective pressure for production of GA 4 in the distinct lifestyle of Xoc, and the importance of GA to both fungal and bacterial pathogens of rice. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Photoelectron emission from LiF surfaces by ultrashort electromagnetic pulses

International Nuclear Information System (INIS)

Acuna, M. A.; Gravielle, M. S.

2011-01-01

Energy- and angle-resolved electron emission spectra produced by incidence of ultrashort electromagnetic pulses on a LiF(001) surface are studied by employing a distorted-wave method named the crystal surface-Volkov (CSV) approximation. The theory makes use of the Volkov phase to describe the action of the external electric field on the emitted electron, while the electron-surface interaction is represented within the tight-binding model. The CSV approach is applied to investigate the effects introduced by the crystal lattice when the electric field is oriented parallel to the surface plane. These effects are essentially governed by the vector potential of the external field, while the influence of the crystal orientation was found to be negligible.

Endophytic Association of Trichoderma asperellum within Theobroma cacao Suppresses Vascular Streak Dieback Incidence and Promotes Side Graft Growth.

Science.gov (United States)

Rosmana, Ade; Nasaruddin, Nasaruddin; Hendarto, Hendarto; Hakkar, Andi Akbar; Agriansyah, Nursalim

2016-09-01

Trichoderma species are able to persist on living sapwood and leaves of cacao ( Theobroma cacao ) in an endophytic relationship. In this research, we evaluated the ability of Trichodema asperellum introduced at the incision site in the bark for side grafting with the concentration of 4 g/10 mL, 4 g/100 mL, and 4 g/1,000 mL (suspended in water) in suppressing vascular streak dieback (VSD) incidence and promoting growth of side grafts in the field. The incidence of VSD in two local clones of cacao, MCC1 and M04, without application of T. asperellum was 71.2% and 70.1% at 21 wk after grafting, respectively. However, when the two clones were treated with a concentration of 4 g/10 mL T. asperellum , the incidence was 20.6% and 21.7%, respectively, compared to 29.1% and 20.9% at 4 g/100 mL and 18.2% and 15.6% at 4 g/1,000 mL. By comparing to the control, the treatment with the same concentrations of T. asperellum listed above, the total number of stomata in MCC1 decreased by 41.9%, 30.2%, and 14.0% and in M04 by 30.5%, 21.9%, and -2.5% (exception), respectively. Otherwise, the total area of stomata opening increased by 91.4%, 99.7%, and 28.6% in MCC1 and by 203.8%, 253.5%, and 35.9% in M04, respectively. Furthermore, the number of buds and branches treated with a mixture concentration on the the two clones increased by 90.7% and 21.7%, respectively. These data showed that the application of T. asperellum to cacao scions while grafting can decrease VSD incidence in side grafts and increase growth of grafts in addition to decreasing total number of stomata, increasing total area of opened stomata, and increasing number of buds and branches.

The diagnostic value and histologic correlate of distinct patterns of shiny white streaks for the diagnosis of melanoma: A retrospective, case-control study.

Science.gov (United States)

Verzi, Anna Eliza; Quan, Victor L; Walton, Kara E; Martini, Mary C; Marghoob, Ashfaq A; Garfield, Erin M; Kong, Betty Y; Isales, Maria Cristina; VandenBoom, Timothy; Zhang, Bin; West, Dennis P; Gerami, Pedram

2018-05-01

Shiny white streaks (SWSs) are best visualized with polarized dermoscopy and correlate with dermal fibroplasia histopathologically. SWSs have been described at higher frequencies in melanomas than in benign nevi. We assessed the diagnostic value of different patterns of SWSs and their histologic correlate in melanocytic lesions. Polarized dermoscopic images of 1507 histopathologically diagnosed melanocytic neoplasms were analyzed for presence and pattern of SWSs. Histology was also reviewed for correlation. Among 1507 melanocytic neoplasms, SWSs were observed in 31 of 144 melanomas (22%) and 22 of 1363 benign neoplasms (1.6%) (P < .001). The sensitivity and specificity of SWSs for melanoma were 22% and 98%, respectively. Diffuse SWSs exhibited the greatest diagnostic value for melanoma, with sensitivity of 11.8% and specificity of 99.5%. Focal central and peripheral SWSs were comparable in diagnostic significance. The presence of SWSs was highly uncommon in dysplastic nevi, whereas in certain benign subgroups of nevi such as Spitz nevi and atypical genital special site nevi, SWSs were not uncommon. Diffuse SWSs correlated with greater breadth of deep fibroplasia than focal SWSs (P = .009), and SWSs correlated with greater Breslow depth among melanomas (P = .007). This study was retrospective. Polarized dermoscopy is a valuable diagnostic tool in the identification of SWSs, a feature that is highly specific for melanoma. Copyright © 2017 American Academy of Dermatology, Inc. Published by Elsevier Inc. All rights reserved.

Occupational radiation exposure at commercial nuclear power reactors and other facilities 1992. Twenty-fifth annual report, Volume 14

International Nuclear Information System (INIS)

Raddatz, C.T.

1993-12-01

This report summarizes the occupational radiation exposure information that has been reported to the NRC's Radiation Exposure Information Reporting System (REIRS) by nuclear power facilities and certain other categories of NRC licensees during the years 1969 through 1992. The bulk of the data presented in the report was obtained from annual radiation exposure reports submitted in accordance with the requirements of 10CFR20.407 and the technical specifications of nuclear power plants. Data on workers terminating their employment at certain NRC licensed facilities were obtained from reports submitted pursuant to 10CFR20.408. The 1992 annual reports submitted by about 364 licensees indicated that approximately 204,365 individuals were monitored, 183,927 of whom were monitored by nuclear power facilities. They incurred an average individual dose of 0.16 rem (cSv) and an average measurable dose of about 0.30 (cSv). Termination radiation exposure reports were analyzed to reveal that about 74,566 individuals completed their employment with one or more of the 364 covered licensees during 1992. Some 71,846 of these individuals terminated from power reactor facilities, and about 9,724 of them were considered to be transient workers who received an average dose of 0.50 rem (cSv)

Occupational radiation exposure at commercial nuclear power reactors and other facilities, 1989

International Nuclear Information System (INIS)

Raddatz, C.T.

1992-04-01

This report summarizes the occupational radiation exposure information that has been reported to the NRC's Radiation Exposure Information Reporting System (REIRS) by nuclear power facilities and certain other categories of NRC 1 licensees during the years 1969 through 1989. The bulk of the data presented in the report was obtained from annual radiation exposure reports submitted in accordance with the requirements of 10 CFR 20.407 and the technical specifications of nuclear power plants. Data on workers terminating their employment at certain NRC 1 licensed facilities were obtained from reports submitted pursuant to 10 CFR 20.408. The 1989 annual reports submitted by about 448 licensees indicated that approximately 216,294 individuals were monitored 111,000 of whom were monitored by nuclear power facilities. They incurred an average individual does of 0.18 rem (cSv) and an average measurable dose of 0.36 (cSv). Termination radiation exposure reports were analyzed to reveal that about 113,535 individuals completed their employment with one or more of the 448 covered licensees during 1989. Some 76,561 of these individuals terminated from power reactor facilities, and about 10, 344 of them were considered to be transient workers who received an average dose of 0.64 rem (cSv)

Occupational radiation exposure at commercial nuclear power reactors and other facilities, 1988

International Nuclear Information System (INIS)

Raddatz, C.T.

1991-07-01

This report summarizes the occupational radiation exposure information that has been reported to the NRC's Radiation Exposure Information Reporting System (REIRS) by nuclear power facilities and certain other categories of NRC licensees during the years 1969 through 1988. The bulk of the data presented in the report was obtained from annual radiation exposure reports submitted in accordance with the requirements of 10 CFR 20.407 and the technical specifications of nuclear power plants. Data on workers terminating their employment at certain NRC licensed facilities were obtained from reports submitted pursuant to 10 CFR 20.408. The 1988 annual reports submitted by about 429 licensees indicated that approximately 220,048 individuals were monitored, 113,00 of whom were monitored by nuclear power facilities. They incurred an average individual dose of 0.20 rem (cSv) and an average measurable dose of 0.41 (cSv). Termination radiation exposure reports were analyzed to reveal that about 113,072 individuals completed their employment with one or more of the 429 covered licensees during 1988. Some 80,211 of these individuals terminated from power reactor facilities, and about 8,760 of them were considered to be transient workers who received an average dose of 0.27 rem (cSv). 17 refs., 11 figs., 29 tabs

Occupational radiation exposure at commercial nuclear power reactors and other facilities, 1990: Twenty-third annual report

International Nuclear Information System (INIS)

Raddatz, C.T.

1993-01-01

This report summarizes the occupational radiation exposure information that has been reported to the NRC's Radiation Exposure Information Reporting System (REIRS) by nuclear power facilities and certain other categories of NRC licensees during the years 1969 through 1990. The bulk of the data presented in the report was obtained from annual radiation exposure reports submitted in accordance with the requirements of 10 CFR 20.407 and the technical specifications of nuclear power plants. Data on workers terminating their employment at certain NRC licensed facilities were obtained from reports submitted pursuant to 10 CFR 20.408. The 1990 annual reports submitted by about 443 licensees indicated that approximately 214,568 individuals were monitored, 110,204 of whom were monitored by nuclear power facilities. They incurred an average individual dose of 0.19 rem (cSv) and an average measurable dose of about 0.36 (cSv). Termination radiation exposure reports were analyzed to reveal that about 113,361 individuals completed their employment with one or more of the 443 covered licensees during 1990. Some 77,633 of these individuals terminated from power reactor facilities, and about 11,083 of them were considered to be transient workers who received an average dose of 0.67 rem (cSv)

Occupational radiation exposure at commercial nuclear power reactors and other facilities, 1991

International Nuclear Information System (INIS)

Raddatz, C.T.

1993-07-01

This report summarizes the occupational radiation exposure information that has been reported to the NRC's Radiation Exposure Information Reporting System (REIRS) by nuclear power facilities and certain other categories of NRC licensees during the years 1969 through 1991. The bulk of the data presented in the report was obtained from annual radiation exposure reports submitted in accordance with the requirements of 10 CFR 20.407 and the technical specifications of nuclear power plants. Data on workers terminating their employment at certain NRC licensed facilities were obtained from reports submitted pursuant to 10 CFR 20.408. The 1991 annual reports submitted by about 436 licensees indicated that approximately 206,732 individuals were monitored, 182,334 of whom were monitored by nuclear power facilities. They incurred an average individual dose of 0.15 rem (cSv) and an average measurable dose of about 0.31 (cSv). Termination radiation exposure reports were analyzed to reveal that about 96,231 individuals completed their employment with one or more of the 436 covered licensees during 1991. Some 68,115 of these individuals terminated from power reactor facilities, and about 7,763 of them were considered to be transient workers who received an average dose of 0.52 rem (cSv)

Occupational radiation exposure at commercial nuclear power reactors and other facilities, 1993. Volume 15, Twenty-six annual report

International Nuclear Information System (INIS)

Raddatz, C.T.

1995-01-01

This report the occupational radiation exposure information that has been reported to the NRC's Radiation Exposure Information Reporting System (REIRS) by nuclear power facilities and certain other categories of NRC licensees during the years 1969 through 1993. The bulk of the data presented in the report was obtained from annual radiation exposure reports submitted in accordance with the requirements of 10 CFR 20.407 and the technical specifications of nuclear power plants. Data on workers terminating their employment at certain NRC licensed facilities were obtained from reports submitted pursuant to 10 CFR 20.408. The 1993 annual reports submitted by about 360 licensees indicated that approximately 189,711 individuals were monitored, 169,872 of whom were monitored by nuclear power facilities. They incurred an average individual dose of 0.16 rem (cSv) and an average measured dose of about 0.31 (cSv). Termination radiation exposure reports were analyzed to reveal that about 99,749 individuals completed their employment with one or more of the 360 covered licensees during 1993. Some 91,000 of these individuals terminated from power reactor facilities, and about 12,685 of them were considered to be transient workers who received an average dose of 0.49 rem (cSv)

Nonlinear Transient Growth and Boundary Layer Transition

Science.gov (United States)

Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

2016-01-01

Parabolized stability equations (PSE) are used in a variational approach to study the optimal, non-modal disturbance growth in a Mach 3 at plate boundary layer and a Mach 6 circular cone boundary layer. As noted in previous works, the optimal initial disturbances correspond to steady counter-rotating streamwise vortices, which subsequently lead to the formation of streamwise-elongated structures, i.e., streaks, via a lift-up effect. The nonlinear evolution of the linearly optimal stationary perturbations is computed using the nonlinear plane-marching PSE for stationary perturbations. A fully implicit marching technique is used to facilitate the computation of nonlinear streaks with large amplitudes. To assess the effect of the finite-amplitude streaks on transition, the linear form of plane- marching PSE is used to investigate the instability of the boundary layer flow modified by spanwise periodic streaks. The onset of bypass transition is estimated by using an N- factor criterion based on the amplification of the streak instabilities. Results show that, for both flow configurations of interest, streaks of sufficiently large amplitude can lead to significantly earlier onset of transition than that in an unperturbed boundary layer without any streaks.

Evidence of sulfate-dependent anaerobic methane oxidation... Wolfe & Wilkin data table vers 1

Data.gov (United States)

U.S. Environmental Protection Agency — Data file (.csv) including data plotted in manuscript figures: methane and sulfate concentrations, and stable isotope data for carbon, hydrogen, sulfur, and oxygen....

Simulated Pathogen Concentrations in Locally-Collected Greywater and Wastewater

Data.gov (United States)

U.S. Environmental Protection Agency — This dataset contains simulated pathogen concentrations in locally-collected greywater and wastewater. Each .zip file includes 21 .csv files, each containing 10,000...

Serological and molecular studies of a novel virus isolate causing yellow mosaic of Patchouli [Pogostemon cablin (Blanco) Benth].

Science.gov (United States)

Zaim, Mohammad; Ali, Ashif; Joseph, Jomon; Khan, Feroz

2013-01-01

Here we have identified and characterized a devastating virus capable of inducing yellow mosaic on the leaves of Patchouli [Pogostemon cablin (Blanco) Benth]. The diagnostic tools used were host range, transmission studies, cytopathology, electron microscopy, serology and partial coat protein (CP) gene sequencing. Evidence from biological, serological and sequence data suggested that the causal virus belonged to genus Potyvirus, family Potyviridae. The isolate, designated as Patchouli Yellow Mosaic Virus (PaYMV), was transmitted through grafting, sap and the insect Myzus persicae (Sulz.). Flexuous rod shaped particles with a mean length of 800 nm were consistently observed in leaf-dip preparations from natural as well as alternate hosts, and in purified preparation. Cytoplasmic cylindrical inclusions, pinwheels and laminar aggregates were observed in ultra-thin sections of infected patchouli leaves. The purified capsid protein has a relative mass of 43 kDa. Polyclonal antibodies were raised in rabbits against the coat protein separated on SDS - PAGE; which were used in ELISA and western blotting. Using specific antibodies in ELISA, PaYMV was frequently detected at patchouli plantations at Lucknow and Bengaluru. Potyvirus-specific degenerate primer pair (U335 and D335) had consistently amplified partial CP gene from crude preparations of infected tissues by reverse transcription polymerase chain reaction (RT-PCR). Comparison of the PCR product sequence (290 bp) with the corresponding regions of established potyviruses showed 78-82% and 91-95% sequence similarity at the nucleotide and amino acid levels, respectively. The results clearly established that the virus under study has close homology with watermelon mosaic virus (WMV) in the coat protein region and therefore could share a common ancestor family. Further studies are required to authenticate the identity of PaYMV as a distinct virus or as an isolate of WMV.

Short distance movement of genomic negative strands in a host and nonhost for Sugarcane mosaic virus (SCMV

Directory of Open Access Journals (Sweden)

Hernández-Vela Juan

2011-01-01

Full Text Available Abstract Background In order to obtain an initial and preliminary understanding of host and nonhost resistance in the initial step of potyvirus replication, both positive and negative Sugarcane mosaic virus (SCMV strands where traced in inoculated and systemic leaves in host and nonhost resistant maize and sugarcane for one Mexican potyviral isolate (SCMV-VER1. Intermediary replication forms, such as the negative viral strand, seem to only move a short distance as surveyed by RT-PCR analysis and ELISA in different leaves. Virus purification was also done in leaves and stems. Results Susceptible maize plants allowed for viral SCMV replication, cell-to-cell, and long distance movement, as indicated by the presence of the coat protein along the plant. In the host resistant maize plants for the SCMV-VER1 isolate, the virus was able to establish the disease though the initial steps of virus replication, as detected by the presence of negative strands, in the basal area of the inoculated leaves at six and twelve days post inoculation. The nonhost sugarcane for SCMV-VER1 and the host sugarcane for SCMV-CAM6 also allowed the initial steps of viral replication for the VER1 isolate in the local inoculated leaf. SCMV-VER1 virions could be extracted from stems of susceptible maize with higher titers than leaves. Conclusion Nonhost and host resistance allow the initial steps of potyvirus SCMV replication, as shown by the negative strands' presence. Furthermore, both hosts allow the negative viral strands' local movement, but not their systemic spread through the stem. The presence of larger amounts of extractable virions from the stem (as compared to the leaves in susceptible maize lines suggests their long distance movement as assembled particles. This will be the first report suggesting the long distance movement of a monocot potyvirus as a virion.

Evaluation of Rice Resistance to Southern Rice Black-Streaked Dwarf Virus and Rice Ragged Stunt Virus through Combined Field Tests, Quantitative Real-Time PCR, and Proteome Analysis.

Science.gov (United States)

Wang, Zhenchao; Yu, Lu; Jin, Linhong; Wang, Wenli; Zhao, Qi; Ran, Longlu; Li, Xiangyang; Chen, Zhuo; Guo, Rong; Wei, Yongtian; Yang, Zhongcheng; Liu, Enlong; Hu, Deyu; Song, Baoan

2017-02-22

Diseases caused by southern rice black-streaked dwarf virus (SRBSDV) and rice ragged stunt virus (RRSV) considerably decrease grain yield. Therefore, determining rice cultivars with high resistance to SRBSDV and RRSV is necessary. In this study, rice cultivars with high resistance to SRBSDV and RRSV were evaluated through field trials in Shidian and Mangshi county, Yunnan province, China. SYBR Green I-based quantitative real-time polymerase chain reaction (qRT-PCR) analysis was used to quantitatively detect virus gene expression levels in different rice varieties. The following parameters were applied to evaluate rice resistance: acre yield (A.Y.), incidence of infected plants (I.I.P.), virus load (V.L.), disease index (D.I.), and insect quantity (I.Q.) per 100 clusters. Zhongzheyou1 (Z1) and Liangyou2186 (L2186) were considered the most suitable varieties with integrated higher A.Y., lower I.I.P., V.L., D.I. and I.Q. In order to investigate the mechanism of rice resistance, comparative label-free shotgun liquid chromatography tandem-mass spectrometry (LC-MS/MS) proteomic approaches were applied to comprehensively describe the proteomics of rice varieties' SRBSDV tolerance. Systemic acquired resistance (SAR)-related proteins in Z1 and L2186 may result in the superior resistance of these varieties compared with Fengyouxiangzhan (FYXZ).

Quantum nonlinear lattices and coherent state vectors

DEFF Research Database (Denmark)

Ellinas, Demosthenes; Johansson, M.; Christiansen, Peter Leth

1999-01-01

for the state vectors invokes the study of the Riemannian and symplectic geometry of the CSV manifolds as generalized phase spaces. Next, we investigate analytically and numerically the behavior of mean values and uncertainties of some physically interesting observables as well as the modifications...... (FP) model. Based on the respective dynamical symmetries of the models, a method is put forward which by use of the associated boson and spin coherent state vectors (CSV) and a factorization ansatz for the solution of the Schrodinger equation, leads to quasiclassical Hamiltonian equations of motion...... state vectors, and accounts for the quantum correlations of the lattice sites that develop during the time evolution of the systems. (C) 1999 Elsevier Science B.V. All rights reserved....

Interactive Effects of Southern Rice Black-Streaked Dwarf Virus Infection of Host Plant and Vector on Performance of the Vector, Sogatella furcifera (Homoptera: Delphacidae).

Science.gov (United States)

Lei, Wenbin; Liu, Danfeng; Li, Pei; Hou, Maolin

2014-10-01

Performance of insect vectors can be influenced by the viruses they transmit, either directly by infection of the vectors or indirectly via infection of the host plants. Southern rice black-streaked dwarf virus (SRBSDV) is a propagative virus transmitted by the white-backed planthopper, Sogatella furcifera (Hovath). To elucidate the influence of SRBSDV on the performance of white-backed planthopper, life parameters of viruliferous and nonviruliferous white-backed planthopper fed rice seedlings infected or noninfected with SRBSDV were measured using a factorial design. Regardless of the infection status of the rice plant host, viruliferous white-backed planthopper nymphs took longer to develop from nymph to adult than did nonviruliferous nymphs. Viruliferous white-backed planthopper females deposited fewer eggs than nonviruliferous females and both viruliferous and nonviruliferous white-backed planthopper females laid fewer eggs on infected than on noninfected plants. Longevity of white-backed planthopper females was also affected by the infection status of the rice plant and white-backed planthopper. Nonviruliferous white-backed planthopper females that fed on infected rice plants lived longer than the other three treatment groups. These results indicate that the performance of white-backed planthopper is affected by SRBSDV either directly (by infection of white-backed planthopper) or indirectly (by infection of rice plant). The extended development of viruliferous nymphs and the prolonged life span of nonviruliferous adults on infected plants may increase their likelihood of transmitting virus, which would increase virus spread. © 2014 Entomological Society of America.

Data_files_Reyes_EHP_phthalates

Data.gov (United States)

U.S. Environmental Protection Agency — The file contains three files in comma separated values (.csv) format. “Reyes_EHP_Phthalates_US_metabolites.csv” contains information about the National Health and...

Potyviral resistance derived from cultivars of Phaseolus vulgaris carrying bc-3 is associated with homozygotic presence of a mutated eIF4E allele

DEFF Research Database (Denmark)

Naderpour, Masoud; Lund, Ole Søgaard; Larsen, Richard

2010-01-01

-3 and bc-u, have been proposed to control resistance to the potyviruses Bean common mosaic virus (BCMV) and Bean common mosaic necrosis virus. In order to identify molecular entities for these genes, we cloned and sequenced P. vulgaris homologues of genes encoding the eIF proteins eIF4E, eIF(iso)4E...

A new potyvirus identified in Czech Republic

Czech Academy of Sciences Publication Activity Database

Sarkisova, Tatiana; Petrzik, Karel

2009-01-01

Roč. 53, č. 2 (2009), s. 143 ISSN 0001-723X R&D Projects: GA AV ČR(CZ) 1QS500510558 Institutional research plan: CEZ:AV0Z50510513 Keywords : Coat protein * Lupinus polyphyllus * Phylogenesis Subject RIV: EE - Microbiology, Virology Impact factor: 0.746, year: 2009

Captive sea turtle rearing inventory, feeding, and water chemistry in sea turtle rearing tanks at NOAA Galveston 1995 to 2015 (NCEI Accession 0156869)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The database contains Excel and CSV spreadsheets monitoring captive Sea Turtle rearing program. Daily feeding logs as well as water chemistry were recorded.

NPP Multi-Biome: PIK Data for Northern Eurasia, 1940-1988 (Based on Bazilevich), R1

Data.gov (United States)

National Aeronautics and Space Administration — There is one comma-separated (.csv) data file and one text (.txt) file (bibliographic information) with this data set. This data set provides above-ground net...

NPP Multi-Biome: PIK Data for Northern Eurasia, 1940-1988 (Based on Bazilevich), R1

Data.gov (United States)

National Aeronautics and Space Administration — ABSTRACT: There is one comma-separated (.csv) data file and one text (.txt) file (bibliographic information) with this data set. This data set provides above-ground...

Figure 3

Data.gov (United States)

U.S. Environmental Protection Agency — The Figure.tar.gz contains a directory for each WRF ensemble run. In these directories are *.csv files for each meteorology variable examined. These are comma...

Coastal 2010: Site Information, Hydrographic Profile, Water Chemistry

Data.gov (United States)

U.S. Environmental Protection Agency — Data from the National Aquatic Resource Surveys: The following data are available for download as comma separated values (.csv) files. Sort the table using the pull...

Multibeam bathymetry and sediment depth data at select locations on the Des Plaines River near Joliet, Illinois, February 13–14, 2017

Data.gov (United States)

Department of the Interior — These data are high-resolution bathymetry (river bottom elevation) in XYZ format and measurements of sediment depth in CSV format, generated from the February 13–14,...

MicroRNAs responding to southern rice black-streaked dwarf virus infection and their target genes associated with symptom development in rice.

Science.gov (United States)

Xu, Donglin; Mou, Guiping; Wang, Kang; Zhou, Guohui

2014-09-22

Southern rice black-streaked dwarf virus (SRBSDV) is a recently emerged rice virus that has spread across Asia. This devastating virus causes rice plants to produce a variety of symptoms during different growth stages. MicroRNAs (miRNAs) comprise a large group of 21-24-nt RNA molecules that are important regulators of plant development processes and stress responses. In this study, we used microarray profiling to investigate rice miRNAs responding to SRBSDV infection at 3, 9, 15, and 20 days post-inoculation (dpi). Expression levels of 56 miRNAs were altered in SRBSDV-infected rice plants, with these changes classified into eight different regulation patterns according to their temporal expression dynamics. Fourteen miRNAs belonging to six families (miR164, R396, R530, R1846, R1858, and R2097) were significantly regulated at 20 dpi. We used RT-qPCR to search for expression level correlations between members of these families and their putative targets at 3, 9, and 15 dpi. Some members of the miR164, R396, R530, and R1846 families were found to be positively or negatively correlated with their respective targets during 3-15 days after SRBSDV infection, whereas in more cases the rice miRNAs were not in correlation with their targets along the post-inoculation period, suggesting that some additional factors may be involved in rice miRNA-target interactions. The reported functions of rice genes targeted by the miR164, R396, R530, R1846, and R1858 families indicated that these genes are associated with symptom development. These results provide insights into miRNA-mediated SRBSDV-rice interactions. Copyright © 2014 Elsevier B.V. All rights reserved.

Metal–organic complexation in the marine environment

Directory of Open Access Journals (Sweden)

Witter Amy

2001-09-01

Full Text Available We discuss the voltammetric methods that are used to assess metal–organic complexation in seawater. These consist of titration methods using anodic stripping voltammetry (ASV and cathodic stripping voltammetry competitive ligand experiments (CSV-CLE. These approaches and a kinetic approach using CSV-CLE give similar information on the amount of excess ligand to metal in a sample and the conditional metal ligand stability constant for the excess ligand bound to the metal. CSV-CLE data using different ligands to measure Fe(III organic complexes are similar. All these methods give conditional stability constants for which the side reaction coefficient for the metal can be corrected but not that for the ligand. Another approach, pseudovoltammetry, provides information on the actual metal–ligand complex(es in a sample by doing ASV experiments where the deposition potential is varied more negatively in order to destroy the metal–ligand complex. This latter approach gives concentration information on each actual ligand bound to the metal as well as the thermodynamic stability constant of each complex in solution when compared to known metal–ligand complexes. In this case the side reaction coefficients for the metal and ligand are corrected. Thus, this method may not give identical information to the titration methods because the excess ligand in the sample may not be identical to some of the actual ligands binding the metal in the sample.

Recent mortality statistics for distally exposed A-bomb survivors: The lifetime cancer risk for exposure under 50 cGy (rad)

International Nuclear Information System (INIS)

Nussbaum, R.H.; Belsey, R.E.; Koehnlein, W.

1990-01-01

An analysis of mortality statistics from the most recent Life Span Study reports of Hiroshima and Nagasaki survivors (covering both the 1950-1982 and the 1950-1985 follow-up periods) indicates a significant difference (p < 0.001) in cancer mortality rates between two distally exposed groups of survivors with organ-absorbed radiation doses under 40 cSv. This implies a mean incremental lifetime cancer risk (exclusive of leukemias) of about 25 excess fatal cancers per 10,000 persons exposed to one additional cSv (rem) of ionizing radiation for persons who had been exposed to doses in the range 1-40 cSv above background levels. This risk value is independent of whether the original (T65DR) dosimetry assignments (choosing a value of 10 for the relative biological effectiveness of neutrons) or the new dosimetry estimates (DS86) are used. The present estimate of A-bomb survivor radiogenic cancer risk associated with low dose exposure was obtained directly from the observed cancer deaths in the low-dose exposure groups without reliance on model-dependent extrapolation from high-dose data. This low-dose risk estimate is about ten times larger than the risk estimates adopted previously by national and international radiation commissions as a basis for current radiation safety guidelines for workers and the general public. (author)

Management response plan for the Chemical Safety Vulnerability Working Group report. Volume 2

International Nuclear Information System (INIS)

1994-09-01

The Chemical Safety Vulnerability (CSV) Working Group was established to identify adverse conditions involving hazardous chemicals at DOE facilities that might result in fires or explosions, release of hazardous chemicals to the environment, or exposure of workers or the public to chemicals. A CSV Review was conducted in 146 facilities at 29 sites. Eight generic vulnerabilities were documented related to: abandoned chemicals and chemical residuals; past chemical spills and ground releases; characterization of legacy chemicals and wastes; disposition of legacy chemicals; storage facilities and conditions; condition of facilities and support systems; unanalyzed and unaddressed hazards; and inventory control and tracking. Weaknesses in five programmatic areas were also identified related to: management commitment and planning; chemical safety management programs; aging facilities that continue to operate; nonoperating facilities awaiting deactivation; and resource allocations. To address the facility-specific and site-specific vulnerabilities, responsible DOE and site-contractor line organizations have developed initial site response plans. These plans, presented as Volume 2 of this Management Response Plan, describe the actions needed to mitigate or eliminate the facility- and site-specific vulnerabilities identified by the CSV Working Group field verification teams. Initial site response plans are described for: Brookhaven National Lab., Hanford Site, Idaho National Engineering Lab., Lawrence Livermore National Lab., Los Alamos National Lab., Oak Ridge Reservation, Rocky Flats Plant, Sandia National Laboratories, and Savannah River Site

NPP Tropical Forest: Maui, Hawaii, U.S.A., 1996-1997, R1

Data.gov (United States)

National Aeronautics and Space Administration — This data set contains one data file (.csv format) that quantifies net primary productivity (NPP) as a function of rainfall in mesic to wet montane rainforests on...

Successful application of FTA Classic Card technology and use of bacteriophage phi29 DNA polymerase for large-scale field sampling and cloning of complete maize streak virus genomes.

Science.gov (United States)

Owor, Betty E; Shepherd, Dionne N; Taylor, Nigel J; Edema, Richard; Monjane, Adérito L; Thomson, Jennifer A; Martin, Darren P; Varsani, Arvind

2007-03-01

Leaf samples from 155 maize streak virus (MSV)-infected maize plants were collected from 155 farmers' fields in 23 districts in Uganda in May/June 2005 by leaf-pressing infected samples onto FTA Classic Cards. Viral DNA was successfully extracted from cards stored at room temperature for 9 months. The diversity of 127 MSV isolates was analysed by PCR-generated RFLPs. Six representative isolates having different RFLP patterns and causing either severe, moderate or mild disease symptoms, were chosen for amplification from FTA cards by bacteriophage phi29 DNA polymerase using the TempliPhi system. Full-length genomes were inserted into a cloning vector using a unique restriction enzyme site, and sequenced. The 1.3-kb PCR product amplified directly from FTA-eluted DNA and used for RFLP analysis was also cloned and sequenced. Comparison of cloned whole genome sequences with those of the original PCR products indicated that the correct virus genome had been cloned and that no errors were introduced by the phi29 polymerase. This is the first successful large-scale application of FTA card technology to the field, and illustrates the ease with which large numbers of infected samples can be collected and stored for downstream molecular applications such as diversity analysis and cloning of potentially new virus genomes.

Performance of Leak Compensation in All-Age ICU Ventilators During Volume-Targeted Neonatal Ventilation: A Lung Model Study.

Science.gov (United States)

Itagaki, Taiga; Bennett, Desmond J; Chenelle, Christopher T; Fisher, Daniel F; Kacmarek, Robert M

2017-01-01

Volume-targeted ventilation is increasingly used in low birthweight infants because of the potential for reducing volutrauma and avoiding hypocapnea. However, it is not known what level of air leak is acceptable during neonatal volume-targeted ventilation when leak compensation is activated concurrently. Four ICU ventilators (Servo-i, PB980, V500, and Avea) were compared in available invasive volume-targeted ventilation modes (pressure control continuous spontaneous ventilation [PC-CSV] and pressure control continuous mandatory ventilation [PC-CMV]). The Servo-i and PB980 were tested with (+) and without (-) their proximal flow sensor. The V500 and Avea were tested with their proximal flow sensor as indicated by their manufacturers. An ASL 5000 lung model was used to simulate 4 neonatal scenarios (body weight 0.5, 1, 2, and 4 kg). The ASL 5000 was ventilated via an endotracheal tube with 3 different leaks. Two minutes of data were collected after each change in leak level, and the asynchrony index was calculated. Tidal volume (V T ) before and after the change in leak was assessed. The differences in delivered V T between before and after the change in leak were within ±5% in all scenarios with the PB980 (-/+) and V500. With the Servo-i (-/+), baseline V T was ≥10% greater than set V T during PC-CSV, and delivered V T markedly changed with leak. The Avea demonstrated persistent high V T in all leak scenarios. Across all ventilators, the median asynchrony index was 1% (interquartile range 0-27%) in PC-CSV and 1.8% (0-45%) in PC-CMV. The median asynchrony index was significantly higher in the Servo-i (-/+) than in the PB980 (-/+) and V500 in 1 and 2 kg scenarios during PC-CSV and PC-CMV. The PB980 and V500 were the only ventilators to acclimate to all leak scenarios and achieve targeted V T . Further clinical investigation is needed to validate the use of leak compensation during neonatal volume-targeted ventilation. Copyright © 2017 by Daedalus Enterprises.

Atlantic salmon endothelial cells from the heart were more susceptible than fibroblasts from the bulbus arteriosus to four RNA viruses but protected from two viruses by dsRNA pretreatment.

Science.gov (United States)

Pham, Phuc H; Tong, Winnie W L; Misk, Ehab; Jones, Ginny; Lumsden, John S; Bols, Niels C

2017-11-01

Heart diseases caused by viruses are major causes of Atlantic salmon aquaculture loss. Two Atlantic salmon cardiovascular cell lines, an endothelial cell line (ASHe) from the heart and a fibroblast cell line (BAASf) from the bulbus arteriosus, were evaluated for their response to four fish viruses, CSV, IPNV, VHSV IVa and VHSV IVb, and the innate immune agonist, double-stranded RNA mimic poly IC. All four viruses caused cytopathic effects in ASHe and BAASf. However, ASHe was more susceptible to all four viruses than BAASf. When comparing between the viruses, ASHe cells were found to be moderately susceptible to CSV and VHSV IVb, but highly susceptible to IPNV and VHSV IVa induced cell death. All four viruses were capable of propagating in the ASHe cell line, leading to increases in virus titre over time. In BAASf, CSV and IPNV produced more than one log increase in titre from initial infection, but VHSV IVb and IVa did not. When looking at the antiviral response of both cell lines, Mx proteins were induced in ASHe and BAASf by poly IC. All four viruses induced Mx proteins in BAASf, while only CSV and VHSV IVb induced Mx proteins in ASHe. IPNV and VHSV IVa suppressed Mx proteins expression in ASHe. Pretreatment of ASHe with poly IC to allow for Mx proteins accumulation protected the culture from subsequent infections with IPNV and VHSV IVa, resulting in delayed cell death, reduced virus titres and reduced viral proteins expression. These data suggest that endothelial cells potentially can serve as points of infections for viruses in the heart and that two of the four viruses, IPNV and VHSV IVa, have mechanisms to avoid or downregulate antiviral responses in ASHe cells. Furthermore, the high susceptibility of the ASHe cell line to IPNV and VHSV IVa can make it a useful tool for studying antiviral compounds against these viruses and for general detection of fish viruses. Copyright © 2017 Elsevier Ltd. All rights reserved.

Resistivity variations related to the large March 9, 1998 eruption at La Fournaise volcano inferred by continuous MT monitoring

Science.gov (United States)

Wawrzyniak, Pierre; Zlotnicki, Jacques; Sailhac, Pascal; Marquis, Guy

2017-11-01

The 2645 m-high La Fournaise volcano, located in the Southwest of Réunion Island (Indian Ocean), is a shield basaltic volcano where effusive eruptions generally occur along long fissures starting from the summit, alongside major fractures that characterize the eruptions' dynamism and effusivity. Between 1992 and 1998, the volcano underwent a quiet period during which few earthquakes were recorded. Minor seismic activity returned after 1997 and picked up in March 1998 during the 35 h preceding the March 9 eruption. From 1996, two autonomous stations (CSV and BAV) were installed on the volcano. CSV was located inside the Enclos Fouqué caldera while BAV was positioned 8.2 km NW of the volcano summit. Horizontal components of the electric and magnetic fields were sampled every 20 s. Continuous time-series were available from 1996 to 1999 at CSV, and from 1997 to March 1998 at BAV. Data have been processed using both single-station and remote-reference processing. Both results show apparent resistivity variations synchronous to the eruption. Time-lapse impedance estimates are computed on overlapping time windows of about two days at both stations. The only major decrease of the observed impedance coincides with the March 1998 eruption. At CSV, the resistivity started to drop about five days before the eruption, reached several local minima until April, and then slowly increased as the volcanic crisis reduced in activity. After the end of the crisis in September 1998, the apparent resistivity recovered its pre-crisis value. The time-lapse results also show variability in directionality: sharp and elongated phase tensor ellipse residuals appear during the eruption with a N105° orientation, suggesting the emergence of an almost NS-striking dyke. A 1D background model built from MT soundings performed during the quiet period (1996 to February 1998) on which a 3D NS-striking dyke was added shows a good agreement with phase tensor residuals and spatial distribution of the

NPP Multi-Biome: TEM Calibration Data, 1992, R1

Data.gov (United States)

National Aeronautics and Space Administration — ABSTRACT: This data set contains one data file (.csv format) that is known as the Terrestrial Ecosystem Model (TEM) data set. The data provide pool sizes and fluxes...

Field-based methods for evaluating the annual maximum specific conductivity tolerated by freshwater invertebrates

Data.gov (United States)

U.S. Environmental Protection Agency — Data includes chemical and biological samples from Ecoregion 69 in West Virginia. eco69_dupchem.csv: 1. Station-year with at least 6 conductivity samples, one in the...

Potyviral resistance derived from cultivars of Phaseolus vulgaris carrying bc-3 co-segregates with homozygotic presence of a mutated eIF4E allele

DEFF Research Database (Denmark)

Naderpour, M; Lund, O Søgaard; Larsen, R

2008-01-01

-binding proteins, eIF4E, eIF(iso)4E and nCBP. In cultivars reported to carry bc-3 resistance, eIF4E was found to display non-silent mutations at codons 53, 65, 76 and 111 closely resembling a pattern of eIF4E mutations determining potyvirus resistance in other plant species. By application of a molecular marker...

NPP Multi-Biome: TEM Calibration Data, 1992, R1

Data.gov (United States)

National Aeronautics and Space Administration — This data set contains one data file (.csv format) that is known as the Terrestrial Ecosystem Model (TEM) data set. The data provide pool sizes and fluxes of carbon...

Diet and investigation of immature sea turtles in the coastal waters of West Florida 1997-2003 (NCEI Accession 0156706)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data contains sea turtle life history,diet analysis, and environmental data, recorded as csv spreadsheets ranging from 1997 to 2003. This data was used to...

Vascular Streak Dieback of cacao in Southeast Asia and Melanesia: in planta detection of the pathogen and a new taxonomy.

Science.gov (United States)

Samuels, Gary J; Ismaiel, Adnan; Rosmana, Ade; Junaid, Muhammad; Guest, David; McMahon, Peter; Keane, Philip; Purwantara, Agus; Lambert, Smilja; Rodriguez-Carres, Marianela; Cubeta, Marc A

2012-01-01

Vascular Streak Dieback (VSD) disease of cacao (Theobroma cacao) in Southeast Asia and Melanesia is caused by a basidiomycete (Ceratobasidiales) fungus Oncobasidium theobromae (syn. =Thanatephorus theobromae). The most characteristic symptoms of the disease are green-spotted leaf chlorosis or, commonly since about 2004, necrotic blotches, followed by senescence of leaves beginning on the second or third flush behind the shoot apex, and blackening of infected xylem in the vascular traces at the leaf scars resulting from the abscission of infected leaves. Eventually the shoot apex is killed and infected branches die. In susceptible cacao the fungus may grow through the xylem down into the main stem and kill a mature cacao tree. Infections in the stem of young plants prior to the formation of the first 3-4 lateral branches usually kill the plant. Basidiospores released from corticioid basidiomata developed on leaf scars or along cracks in the main vein of infected leaves infect young leaves. The pathogen commonly infects cacao but there are rare reports from avocado. As both crops are introduced to the region, the pathogen is suspected to occur asymptomatically in native vegetation. The pathogen is readily isolated but cultures cannot be maintained. In this study, DNA was extracted from pure cultures of O. theobromae obtained from infected cacao plants sampled from Indonesia. The internal transcribed spacer region (ITS), consisting of ITS1, 5.8S ribosomal RNA and ITS2, and a portion of nuclear large subunit (LSU) were sequenced. Phylogenetic analysis of ITS sequences placed O. theobromae sister to Ceratobasidium anastomosis groups AG-A, AG-Bo, and AG-K with high posterior probability. Therefore the new combination Ceratobasidium theobromae is proposed. A PCR-based protocol was developed to detect and identify C. theobromae in plant tissue of cacao enabling early detection of the pathogen in plants. A second species of Ceratobasidium, Ceratobasidium ramicola

Performance of Copan WASP for Routine Urine Microbiology

Science.gov (United States)

Quiblier, Chantal; Jetter, Marion; Rominski, Mark; Mouttet, Forouhar; Böttger, Erik C.; Keller, Peter M.

2015-01-01

This study compared a manual workup of urine clinical samples with fully automated WASPLab processing. As a first step, two different inocula (1 and 10 μl) and different streaking patterns were compared using WASP and InoqulA BT instrumentation. Significantly more single colonies were produced with the10-μl inoculum than with the 1-μl inoculum, and automated streaking yielded significantly more single colonies than manual streaking on whole plates (P < 0.001). In a second step, 379 clinical urine samples were evaluated using WASP and the manual workup. Average numbers of detected morphologies, recovered species, and CFUs per milliliter of all 379 urine samples showed excellent agreement between WASPLab and the manual workup. The percentage of urine samples clinically categorized as positive or negative did not differ between the automated and manual workflow, but within the positive samples, automated processing by WASPLab resulted in the detection of more potential pathogens. In summary, the present study demonstrates that (i) the streaking pattern, i.e., primarily the number of zigzags/length of streaking lines, is critical for optimizing the number of single colonies yielded from primary cultures of urine samples; (ii) automated streaking by the WASP instrument is superior to manual streaking regarding the number of single colonies yielded (for 32.2% of the samples); and (iii) automated streaking leads to higher numbers of detected morphologies (for 47.5% of the samples), species (for 17.4% of the samples), and pathogens (for 3.4% of the samples). The results of this study point to an improved quality of microbiological analyses and laboratory reports when using automated sample processing by WASP and WASPLab. PMID:26677255

Video deraining and desnowing using temporal correlation and low-rank matrix completion.

Science.gov (United States)

Kim, Jin-Hwan; Sim, Jae-Young; Kim, Chang-Su

2015-09-01

A novel algorithm to remove rain or snow streaks from a video sequence using temporal correlation and low-rank matrix completion is proposed in this paper. Based on the observation that rain streaks are too small and move too fast to affect the optical flow estimation between consecutive frames, we obtain an initial rain map by subtracting temporally warped frames from a current frame. Then, we decompose the initial rain map into basis vectors based on the sparse representation, and classify those basis vectors into rain streak ones and outliers with a support vector machine. We then refine the rain map by excluding the outliers. Finally, we remove the detected rain streaks by employing a low-rank matrix completion technique. Furthermore, we extend the proposed algorithm to stereo video deraining. Experimental results demonstrate that the proposed algorithm detects and removes rain or snow streaks efficiently, outperforming conventional algorithms.

EVEN-SKIPPED HOMEOBOX 1 controls human ES cell differentiation by directly repressing GOOSECOID expression

DEFF Research Database (Denmark)

Kalisz, Mark; Winzi, Maria Karin; Bisgaard, Hanne Cathrine

2012-01-01

(EVX1) and GOOSECOID (GSC) regulate cell fate decisions in streak-like progenitors derived from human ES cells exposed to BMP4 and/or activin. We found that EVX1 repressed GSC expression and promoted formation of posterior streak-like progeny in response to BMP4, and conversely that GSC repressed EVX1...... expression and was required for development of anterior streak-like progeny in response to activin. Chromatin immunoprecipitation assays showed that EVX1 bound to the GSC 5'-flanking region in BMP4 treated human ES cells, and band shift assays identified two EVX1 binding sites in the GSC 5'-region......TGFß signaling patterns the primitive streak, yet little is known about transcriptional effectors that mediate the cell fate choices during streak-like development in mammalian embryos and in embryonic stem (ES) cells. Here we demonstrate that cross-antagonistic actions of EVEN-SKIPPED HOMEOBOX 1...

Keefektivan Trichoderma harzianum sebagai Agens Pengendali Hayati Penyakit Pembuluh kayu (Vascular Streak Dieback Pada Tanaman Kakao Klon ICCRI 03 dan TSH 858

Directory of Open Access Journals (Sweden)

joko susiyanto

2017-06-01

Full Text Available ABSTRAKPenyakit Pembuluh Kayu (PPK/ Vascular Streak Dieback (VSD merupakan penyakit penting yang menyerang perkebunan kakao yang disebabkan oleh patogen Oncobasidium theobromae. Penggunaan cendawan Trichoderma harzianum sebagai agens antagonis karena mempunyai kemampuan dalam menghambat pertumbuhan cendawan patogen. Pengujian keefektivan cendawan T. harzianum isolat Jember dan isolat Banyuwangi pada beberapa konsentrasi dalam mengendalikan penyakit pembuluh kayu (PPK/VSD telah dilaksanakan dikebun percobaan pusat penelitian kopi dan kakao Indonesia. Penelitian ini dilaksanakan selama 3 bulan dan pengamatan setiap minggu. Perlakuan yang digunakan dalam keefektivan yaitu: (1 T. harzianum isolat Jember dengan konsentrasi 108 spora/ml, (2 T. harzianum isolat Jember dengan konsentrasi 109 spora/ml, (3 T. harzianum isolat Jember dengan konsentrasi 1010 spora/ml, (4 T. harzianum isolat Banyuwangi konsentrasi 108 spora/ml, (5 T. harzianum isolat Banyuwangi konsentrasi 109 spora/ml, (6 T. harzianum isolat Banyuwangi konsentrasi 1010 spora/ml, dan Kontrol menggunakan air bersih. Hasil penelitian menunjukkan bahwa T. harzianum  baik isolat Jember dan Banyuwangi cukup efektif menekan perkembangan penyakit pembuluh kayu (PPK/VSD. Perlakuan T. harzianum terbaik dalam mengendalikan penyakit (PPK/VSD ditunjukkan oleh perlakuan T. harzianum  isolat Jember  109 spora/ml dengan nilai IP sebesar 0,71 % pada klon ICCRI 03, sedangkan pada klon TSH 858 isolat Banyuwangi konsentrasi 1010 spora/ml dengan nilai 7,38%. Kategori Tingkat Efikasi (TE tertinggi ditunjukkan oleh perlakuan isolat Jember konsentrasi 109 spora/ml dengan nilai sebesar 95,3% pada klon ICCRI 03, sedangkan pada klon TSH 858 isolat banyuwangi konsentrasi  1010 spora/ml dengan nilai 80,55%. Hasil uji t tanpa memperhatikan perlakuan pada Tingkat Efikasi (TE klon ICCRI 03 menunjukkan hasil berbeda nyata dengan nilai TE lebih tinggi/terbaik bila dibandingkan dengan nilai TE klon TSH 858.  �

Cryoseism Vibrational Movement and Sorting of Detritus of Mars' Regolith Bedforms (E.G., ~ Streaks, Gullies): a New, Dry, Midsummer Antarctic Analogue Mechanism

Science.gov (United States)

Ford, A. B.

2015-12-01

"SNAP!, CRACK!, POP!" The sounds reverberated across newly shaded permafrost of unusual talus aprons (Ford & Andersen, 1967; J. Geol., 75, 722-732) of interior Antarctica (lats. >84°S; Thiel, Pensacola mtns.), coming from ice cracking under tensile failure (cryoseisms). Apron regoliths show conspicuously reversed downslope particle-size sorting and downslope-oriented lineations (debris-cleared tracts; stone stripes) formed by vibrational movement of detritus by midsummer, diurnal cracking of ice. Moving laterally by vibrations away from cracks, with downslope component by gravity, finer detritus becomes concentrated downslope from coarser debris of initial cliff fall — winnowed, as if on a gigantic vibrating shaking table. Slopes outside shade zones remain free of cracking. Diurnal midday shading of solar-warmed, debris-mantled permafrost- and glacier-surface ice at low ambient midsummer temperatures produces high strain-loading rates that exceed tensile toughness of inhomogeneous, polycrystalline ice containing zones of older but sealed cracks. This dry, mechanical, cryoseism mechanism is here proposed also for now waterless Mars and other icy Solar System bodies. Regolith features of Mars' cryosphere may appear different from anrarctic analogues owing to likely operation over tens if not hundreds of millions of years longer than on Earth. The strain distributions in tensile failure of ice better explain a common spacing uniformity of many martian linear features than others' proposed origins, and for some "active" streaks and gully channels, TARS, RSL and dune-slipface channels, as well as for dune orthogonality, diurnal moonquakes and asteroid-regolith detrital sorting (e.g., "rubble-pile" 25143-Itokawa). Because periodic shade from topography (canyons, craters, etc.) is needed, the mechanism is not expected on flattish terrains where more normal annual cooling rates produce the common polygonal tensile fracturing of ice

St Andrews Bay, Florida, Juvenile Reeffish Survey from 2002-07-05 to 2015-08-13 (NCEI Accession 0156994)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set contains Excel and CSV files containing fish length of Juvenile Reeffish. Trawls were made during the summer months in shallow seagrass beds to monitor...

Large Drought-induced Variations in Oak Leaf Volatile Organic Compound Emissions during PINOT NOIR 2012

Data.gov (United States)

U.S. Environmental Protection Agency — Leaf level oak isoprene emissions and co2/H2O exchange in the Ozarks, USA BAGeron.csv is the speciated biomass displayed in Figure 1. Biomass Dry Weights.xlsx is...

Rice black-streaked dwarf virus P6 self-interacts to form punctate, viroplasm-like structures in the cytoplasm and recruits viroplasm-associated protein P9-1

Directory of Open Access Journals (Sweden)

Yu Jialin

2011-01-01

Full Text Available Abstract Background Rice black-streaked dwarf virus (RBSDV, a member of the genus Fijivirus within the family Reoviridae, can infect several graminaceous plant species including rice, maize and wheat, and is transmitted by planthoppers. Although several RBSDV proteins have been studied in detail, functions of the nonstructural protein P6 are still largely unknown. Results In the current study, we employed yeast two-hybrid assays, bimolecular fluorescence complementation and subcellular localization experiments to show that P6 can self-interact to form punctate, cytoplasmic viroplasm-like structures (VLS when expressed alone in plant cells. The region from residues 395 to 659 is necessary for P6 self-interaction, whereas two polypeptides (residues 580-620 and 615-655 are involved in the subcellular localization of P6. Furthermore, P6 strongly interacts with the viroplasm-associated protein P9-1 and recruits P9-1 to localize in VLS. The P6 395-659 region is also important for the P6-P9-1 interaction, and deleting any region of P9-1 abolishes this heterologous interaction. Conclusions RBSDV P6 protein has an intrinsic ability to self-interact and forms VLS without other RBSDV proteins or RNAs. P6 recruits P9-1 to VLS by direct protein-protein interaction. This is the first report on the functionality of RBSDV P6 protein. P6 may be involved in the process of viroplasm nucleation and virus morphogenesis.

A new strategy for 2,4,6-Trinitrotoluene adsorption and electrochemical reduction on poly(melamine)/graphene oxide modified electrode

International Nuclear Information System (INIS)

Cotchim, Suparat; Thavarungkul, Panote; Kanatharana, Proespichaya; Limbut, Warakorn

2015-01-01

Highlights: • A new fabrication strategy of a poly(melamine)/graphene oxide (PM/GO) modified glassy carbon electrode (GCE) (PM/GO/GCE) for the detection of ultra-traces of TNT is proposed. • The PM/GO/GCE exhibits excellent adsorption and electrochemical reduction of TNT via the AdCSV technique. • The PM/GO/GCE provides for a high sensitivity, good repeatability and selectivity. • This strategy opens new opportunities for the sensitive detection of TNT aiming at protection of the environmental and homeland securities. - Abstract: A poly(melamine)/graphene oxide (PM/GO) layer modified on a glassy carbon electrode (GCE) was used for the adsorption and electrochemical detection of 2,4,6 trinitrotoluene (TNT). The surface morphology and electrochemical behaviour of the PM/GO/GCE were characterized by scanning electron microscopy (SEM), fourier transform infrared spectroscopy (FT-IR), cyclic voltammetry (CV) and adsorptive cathodic stripping voltammetry (AdCSV). The PM/GO/GCE exhibited excellent adsorption and electrochemical reduction of TNT via the AdCSV technique with two linear ranges, 1–90 μg L −1 and 100–1000 μg L −1 , a detection limit of 0.34 μg L −1 and a quantitation limit of 1.14 μg L −1 . The PM/GO/GCE provided for a high sensitivity, good repeatability and selectivity. This modified electrode was successfully applied to detect TNT in soil samples with good recoveries that ranged from 93 to 99%.

Demonstration of New OLAF Capabilities and Technologies

Science.gov (United States)

Kingston, C.; Palmer, E.; Stone, J.; Neese, C.; Mueller, B.

2017-06-01

Upgrades to the On-Line Archiving Facility (OLAF) PDS tool are leading to improved usability and additional functionality by integration of JavaScript web app frameworks. Also included is the capability to upload tabular data as CSV files.

Molecular confirmation of Maize rayado fino virus as the Brazilian corn streak virus Confirmação molecular do 'Maize rayado fino virus' como vírus da estria do milho

Directory of Open Access Journals (Sweden)

Rosemarie Wahnbaeck Hammond

2005-12-01

Full Text Available Maize rayado fino virus (MRFV, present in various countries in Latin America, has shown similarities to corn streak virus that occurs in Brazil, regarding pathogenic, serological and histological characteristics. In the current report both virus were molecularly compared to confirm the similarities between them. MRFV was identified by nucleic acid hybridization in samples of maize tissues exhibiting symptoms of "corn stunt" disease, collected from two Brazilian States - São Paulo and Minas Gerais. The coat protein gene and 3'non-translated region of MRFV were amplified from infected tissues by reverse transcription-polymerase chain reaction (RT-PCR using MRFV-specific primers, and were characterized by nucleotide sequence and phylogenetic analysis of the cloned PCR products. Phylogenetic analysis of the relationships between the Brazilian isolates and isolates obtained from Latin America and the United States reveals a close relationship to isolates from Brazil, Peru and Bolivia. Results support the proposal that the Brazilian corn streak virus be regarded as an isolate of MRFV and provide evidence for the presence of MRFV in "corn stunt' disease in Brazil.O vírus do rayado fino do milho (MRFV, presente em vários países da América Latina, tem mostrado semelhança ao vírus da risca do milho que ocorre no Brasil, em relação a características patogênicas, sorológicas e histológicas. No presente trabalho, ambos os vírus foram comparados molecularmente, visando confirmar a similaridade entre os mesmos. O MRFV foi identificado por hibridização de ácido nucléico em amostras de tecido que apresentavam sintomas de enfezamento, coletadas nos estados de São Paulo e Minas Gerais. O gene da capa protéica e a região 3' não traduzida do MRFV foram amplificados, a partir de tecidos infectados, através da transcrição reversa por reação em cadeia da polimerase (RT-PCR, usando-se os iniciadores específicos para o vírus, obtendo-se a seq

2219-IJBCS-Article-Ayisah Kwasi

African Journals Online (AJOL)

hp

Le virus de la mosaïque de l'igname (YMV), genre Potyvirus, entrave gravement la culture d'ignames au Togo. Pour contrôler le virus, la recherche des sources locales résistantes d'ignames a été entreprise. Une collection de 36 clones sains d'ignames sélectionnés lors d'essais de résistance aux viroses de 120 ...

The Significance of Wild Plants in the Evolutionary Ecology of Three Major Viruses Infecting Cultivated Sweetpotato in Uganda

OpenAIRE

Tugume Kajungu, Arthur

2010-01-01

The studies presented in this thesis contribute to the understanding of evolutionary ecology of three major viruses threatening cultivated sweetpotato (Ipomoea batatas Lam) in East Africa: Sweet potato feathery mottle virus (SPFMV; genus Potyvirus; Potyviridae), Sweet potato chlorotic stunt virus (SPCSV; genus Crinivirus; Closteroviridae) and Sweet potato mild mottle virus (SPMMV; genus Ipomovirus; Potyviridae). The viruses were serologically detected and the positive results confirmed b...

Figure 7

Data.gov (United States)

U.S. Environmental Protection Agency — Two files provided. The ENS.tar file contains text data files (*.csv) used to create Figure 7 and Figure 8. The Figure7.txt is an R script that reads these files and...

Comparative Studies of the Speciation Patterns of Nickel and ...

African Journals Online (AJOL)

Results of speciation stdies of nickel and chromium in wastewater, surface and groundwater systems using flame atomic absorption spectrometry (FAAS), graphite furnace atomic absorption spectrometry (GFAAS) and differential pulse adsorptive cathodic stripping voltammetry (DPAdCSV) are presented. Dimethylglyoxime ...

Human Management of a Wild Plant Modulates the Evolutionary Dynamics of a Gene Determining Recessive Resistance to Virus Infection.

Science.gov (United States)

Poulicard, Nils; Pacios, Luis Fernández; Gallois, Jean-Luc; Piñero, Daniel; García-Arenal, Fernando

2016-08-01

This work analyses the genetic variation and evolutionary patterns of recessive resistance loci involved in matching-allele (MA) host-pathogen interactions, focusing on the pvr2 resistance gene to potyviruses of the wild pepper Capsicum annuum glabriusculum (chiltepin). Chiltepin grows in a variety of wild habitats in Mexico, and its cultivation in home gardens started about 25 years ago. Potyvirus infection of Capsicum plants requires the physical interaction of the viral VPg with the pvr2 product, the translation initiation factor eIF4E1. Mutations impairing this interaction result in resistance, according to the MA model. The diversity of pvr2/eIF4E1 in wild and cultivated chiltepin populations from six biogeographical provinces in Mexico was analysed in 109 full-length coding sequences from 97 plants. Eleven alleles were found, and their interaction with potyvirus VPg in yeast-two-hybrid assays, plus infection assays of plants, identified six resistance alleles. Mapping resistance mutations on a pvr2/eIF4E1 model structure showed that most were around the cap-binding pocket and strongly altered its surface electrostatic potential, suggesting resistance-associated costs due to functional constraints. The pvr2/eIF4E1 phylogeny established that susceptibility was ancestral and resistance was derived. The spatial structure of pvr2/eIF4E1 diversity differed from that of neutral markers, but no evidence of selection for resistance was found in wild populations. In contrast, the resistance alleles were much more frequent, and positive selection stronger, in cultivated chiltepin populations, where diversification of pvr2/eIF4E1 was higher. This analysis of the genetic variation of a recessive resistance gene involved in MA host-pathogen interactions in populations of a wild plant show that evolutionary patterns differ according to the plant habitat, wild or cultivated. It also demonstrates that human management of the plant population has profound effects on the

Human Management of a Wild Plant Modulates the Evolutionary Dynamics of a Gene Determining Recessive Resistance to Virus Infection.

Directory of Open Access Journals (Sweden)

Nils Poulicard

2016-08-01

Full Text Available This work analyses the genetic variation and evolutionary patterns of recessive resistance loci involved in matching-allele (MA host-pathogen interactions, focusing on the pvr2 resistance gene to potyviruses of the wild pepper Capsicum annuum glabriusculum (chiltepin. Chiltepin grows in a variety of wild habitats in Mexico, and its cultivation in home gardens started about 25 years ago. Potyvirus infection of Capsicum plants requires the physical interaction of the viral VPg with the pvr2 product, the translation initiation factor eIF4E1. Mutations impairing this interaction result in resistance, according to the MA model. The diversity of pvr2/eIF4E1 in wild and cultivated chiltepin populations from six biogeographical provinces in Mexico was analysed in 109 full-length coding sequences from 97 plants. Eleven alleles were found, and their interaction with potyvirus VPg in yeast-two-hybrid assays, plus infection assays of plants, identified six resistance alleles. Mapping resistance mutations on a pvr2/eIF4E1 model structure showed that most were around the cap-binding pocket and strongly altered its surface electrostatic potential, suggesting resistance-associated costs due to functional constraints. The pvr2/eIF4E1 phylogeny established that susceptibility was ancestral and resistance was derived. The spatial structure of pvr2/eIF4E1 diversity differed from that of neutral markers, but no evidence of selection for resistance was found in wild populations. In contrast, the resistance alleles were much more frequent, and positive selection stronger, in cultivated chiltepin populations, where diversification of pvr2/eIF4E1 was higher. This analysis of the genetic variation of a recessive resistance gene involved in MA host-pathogen interactions in populations of a wild plant show that evolutionary patterns differ according to the plant habitat, wild or cultivated. It also demonstrates that human management of the plant population has profound

Colour break in reverse bicolour daffodils is associated with the presence of Narcissus mosaic virus

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Davies Kevin M

2011-08-01

Full Text Available Abstract Background Daffodils (Narcissus pseudonarcissus are one of the world's most popular ornamentals. They also provide a scientific model for studying the carotenoid pigments responsible for their yellow and orange flower colours. In reverse bicolour daffodils, the yellow flower trumpet fades to white with age. The flowers of this type of daffodil are particularly prone to colour break whereby, upon opening, the yellow colour of the perianth is observed to be 'broken' into patches of white. This colour break symptom is characteristic of potyviral infections in other ornamentals such as tulips whose colour break is due to alterations in the presence of anthocyanins. However, reverse bicolour flowers displaying colour break show no other virus-like symptoms such as leaf mottling or plant stunting, leading some to argue that the carotenoid-based colour breaking in reverse bicolour flowers may not be caused by virus infection. Results Although potyviruses have been reported to cause colour break in other flower species, enzyme-linked-immunoassays with an antibody specific to the potyviral family showed that potyviruses were not responsible for the occurrence of colour break in reverse bicolour daffodils. Colour break in this type of daffodil was clearly associated with the presence of large quantities of rod-shaped viral particles of lengths 502-580 nm in tepals. Sap from flowers displaying colour break caused red necrotic lesions on Gomphrena globosa, suggesting the presence of potexvirus. Red necrotic lesions were not observed in this indicator plant when sap from reverse bicolour flowers not showing colour break was used. The reverse transcriptase polymerase reactions using degenerate primers to carla-, potex- and poty-viruses linked viral RNA with colour break and sequencing of the amplified products indicated that the potexvirus Narcissisus mosaic virus was the predominant virus associated with the occurrence of the colour break

Generación de anticuerpos policlonales para la detección de la variante genotípica GIII de PVY, en cultivos de tomate de árbol y papa de Colombia

Directory of Open Access Journals (Sweden)

Yuliana Gallo García

2012-01-01

Full Text Available Título en ingles: Generation of policlonal antibodies for detection of the PVY genotypic variant GIII in tamarillo and potato crops from Colombia Resumen: El potyvirus PVY es uno de los agentes causales más frecuentemente asociados a problemas virales en cultivos de papa y tomate de árbol en Colombia. Dada la importancia económica de las enfermedades causadas por PVY y a la necesidad de generar material de siembra certificado por su sanidad viral, es fundamental la generación de herramientas de diagnóstico que permitan la detección temprana de este virus. En este trabajo se reporta la obtención de anticuerpos policlonales específicos, útiles para la detección del genotipo III de PVY (GIII, una de las tres variantes que recientemente han sido reportadas en cultivos de papa y tomate de árbol de la región Andina de Colombia. Como antígeno, se utilizó un péptido sintético diseñado a partir de la región variable del extremo N-terminal del gen de la cápside viral. La sensibilidad de los anticuerpos fue evaluada mediante pruebas de ELISA y dot-blot utilizando péptidos sintéticos. Se realizó una prueba piloto para validar el uso de los anticuerpos a partir de plantas sintomáticas y asintomáticas obtenidas de una región donde confluyen cultivos de ambas solanáceas, encontrándose que los anticuerpos generados ofrecen mayores niveles de detección que los anticuerpos comerciales comúnmente utilizados para detectar los serotipos PVY-O,C y PVY-N de este virus. Palabras clave: anticuerpos policlonales; ELISA; potyvirus; RT-PCR; virus Y de la papa Abstract: PVY is one of the potyvirus more frequently associated with viral infections in tomato and tamarillo crops in Colombia. Due to the economic impact of PVY and the need to certify seeds as virus-free it is important to develop diagnostic tools that allow its premature detection. In this work, the obtention of antibodies detecting the genotype III of PVY is reported. This genotype

Gas flow and thermal mixing in a helically wound tube bundle

International Nuclear Information System (INIS)

Chiger, H.D.

1980-07-01

The thermal dissipation of a hot gas streak flowing across a segment of a helically wound tube bundle and the bypass flow streaming between the tubes and the bundle wall were investigated experimentally in the range of 8000 < Re < 50,000. Two different modes of creating a hot streak were employed. A planar hot streak was (1) injected at the entrance to the tube bundle and (2) generated by electrically heating several tubes past the bundle inlet. In the first case the mixing occurs in a region of lower turbulence since it occurs near the bundle inlet. In the second case the mixing occurs in a region of higher turbulence since the flow has already passed over several tube rows before the hot streak is generated

Gambler's fallacy, hot hand belief, and the time of patterns

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Hongbin Wang

2010-04-01

Full Text Available The gambler's fallacy and the hot hand belief have been classified as two exemplars of human misperceptions of random sequential events. This article examines the times of pattern occurrences where a fair or biased coin is tossed repeatedly. We demonstrate that, due to different pattern composition, two different statistics (mean time and waiting time can arise from the same independent Bernoulli trials. When the coin is fair, the mean time is equal for all patterns of the same length but the waiting time is the longest for streak patterns. When the coin is biased, both mean time and waiting time change more rapidly with the probability of heads for a streak pattern than for a non-streak pattern. These facts might provide a new insight for understanding why people view streak patterns as rare and remarkable. The statistics of waiting time may not justify the prediction by the gambler's fallacy, but paying attention to streaks in the hot hand belief appears to be meaningful in detecting the changes in the underlying process.

Stabilization of Hypersonic Boundary Layers by Linear and Nonlinear Optimal Perturbations

Science.gov (United States)

Paredes, Pedro; Choudhari, Meelan M.; Li, Fei

2017-01-01

The effect of stationary, finite-amplitude, linear and nonlinear optimal perturbations on the modal disturbance growth in a Mach 6 axisymmetric flow over a 7 deg. half-angle cone with 0:126 mm nose radius and 0:305 m length is investigated. The freestream parameters (M = 6, Re(exp 1) = 18 x 10(exp. 6) /m) are selected to match the flow conditions of a previous experiment in the VKI H3 hypersonic tunnel. Plane-marching parabolized stability equations are used in conjunction with a partial-differential equation based planar eigenvalue analysis to characterize the boundary layer instability in the presence of azimuthally periodic streaks. The streaks are observed to stabilize nominally planar Mack mode instabilities, although oblique Mack mode and first-mode disturbances are destabilized. Experimentally measured transition onset in the absence of any streaks correlates with an amplification factor of N = 6 for the planar Mack modes. For high enough streak amplitudes, the transition threshold of N = 6 is not reached by the Mack mode instabilities within the length of the cone; however, subharmonic first-mode instabilities, which are destabilized by the presence of the streaks, do reach N = 6 near the end of the cone. The highest stabilization is observed at streak amplitudes of approximately 20 percent of the freestream velocity. Because the use of initial disturbance profiles based on linear optimal growth theory may yield suboptimal control in the context of nonlinear streaks, the computational predictions are extended to nonlinear optimal growth theory. Results show that by using nonlinearly optimal perturbation leads to slightly enhanced stabilization of plane Mack mode disturbances as well as reduced destabilization of subharmonic first-mode disturbances.

Occupational radiation exposure at commercial nuclear power reactors and other facilities 1986

International Nuclear Information System (INIS)

Brooks, B.G.; Hagemeyer, D.

1989-08-01

This report summarizes the occupational exposure data that are maintained in the US Nuclear Regulatory Commission's Radiation Exposure Information and Reporting System (REIRS). The bulk of the information contained in the report was extracted from the 1986 annual statistical reports submitted by six of the seven categories of NRC licensees subject to the reporting requirements of 10 CFR section 20.407. Since there are no geologic repositories for high level waste currently licensed, only six categories will be considered in this report. These six categories of licensees also submit personal identification and exposure information for terminating employees pursuant to 10 CFR section 20.408, and some analysis of this ''termination'' data is also presented in this report. Annual report for 1986 were received from a total of 482 NRC licensees, 101 of whom were licensed nuclear power reactors. Compilations of the 482 reports indicated that some 227,652 individuals were monitored, 116,241 of whom received a measurable dose (Table 3.1). The collective dose incurred by these individuals was calculated to be 46,366 person-rems (person-cSv) which represents a decrease of 23% from the 1985 value. The number of workers receiving a measurable dose increased while the collective dose decreased slightly, causing the average measurable dose to decrease from 0.43 rem (cSv) to 0.40 rem (cSv). About 13% of the monitored individuals were found to have received doses greater than 0.50 rem (cSv), which is about the same as the value for 1985. 16 refs., 11 figs., 26 tabs

Southern rice black-streaked dwarf virus (SRBSDV) directly affects the feeding and reproduction behavior of its vector, Sogatella furcifera (Horváth) (Hemiptera: Delphacidae).

Science.gov (United States)

Xu, Hongxing; He, Xiaochan; Zheng, Xusong; Yang, Yajun; Tian, Junce; Lu, Zhongxian

2014-03-24

Southern rice black-streaked dwarf virus (SRBSDV) is a recently discovered member of the genus Fijivirus and it is transmitted by the rice whitebacked planthopper (WBPH), Sogatella furcifera (Horváth). It was found that SRBSDV infected vectors might contribute negatively to the WBPH population, although the longer nymphal period might benefit viral acquisition, transmission and increase infection rate. The interaction between SRBSDV and its vector need to be further explored to gain better understanding of the dispersal of WBPH and the spread of virus disease, in particular the feeding and reproduction behavior of viruliferous WBPH. Newly hatched nymphs of WBPH were fed on healthy rice plant after feeding on SRBSDV-infected rice plants for 2 h, and newly emerged adults were numbered and tested. Feeding behaviors of WBPH adults were monitored electronically within a Faraday cage using a Giga-4 DC EPG amplifier. The newly emerged adults were paired, and the fecundity and egg hatchability were investigated. WBPH was molecularly identified for SRBSDV when they dead. According to the identification results, data on viruliferous and non-viruliferous WBPH were collected and analyzed. Feeding behavior of viruliferous WBPH was different from those of non-viruliferous WBPH. Frequency of phloem sap ingestion of viruliferous WBPH increased significantly, however the total feeding duration did not increase markedly. When both WBPH parents were infected with SRBSDV, their fecundity and hatchability of the eggs produced were significant lower than those of normal WBPH parents. However, if only one of the parents was viruliferous, fecundity and egg hatchability were only slightly affected. Viruliferous WBPH fed on the phloem more frequently than non-viruliferous WBPH and can thus contribute to virus transmission. When both vector parents are viruliferous fecundity and hatchability of the eggs were significantly reduced. However when only one of the parents WBPH was viruliferous

Biogeochemical speciation of Fe in ocean water

NARCIS (Netherlands)

Hiemstra, T.; Riemsdijk, van W.H.

2006-01-01

The biogeochemical speciation of Fe in seawater has been evaluated using the consistent Non-Ideal Competitive Adsorption model (NICA¿Donnan model). Two types of data sets were used, i.e. Fe-hydroxide solubility data and competitive ligand equilibration/cathodic stripping voltammetry (CLE/CSV) Fe

Fe-Binding Dissolved Organic Ligands in the Oxic and Suboxic Waters of the Black Sea

NARCIS (Netherlands)

Gerringa, L.J.A.; Rijkenberg, M.J.A.; Bown, J.; Margolin, A.R.; Laan, P.; De Baar, H.J.W.

2016-01-01

In the oxygen-rich layer of the Black Sea, above the permanent halocline, the Fe and nitrate concentrations are low where fluorescence is relatively high, indicating uptake by phytoplankton. In this study we used ligand exchange adsorptive cathodic stripping voltammetry (CLE-aCSV), using

Clinical Skills Verification, Formative Feedback, and Psychiatry Residency Trainees

Science.gov (United States)

Dalack, Gregory W.; Jibson, Michael D.

2012-01-01

Objective: The authors describe the implementation of Clinical Skills Verification (CSV) in their program as an in-training assessment intended primarily to provide formative feedback to trainees, strengthen the supervisory experience, identify the need for remediation of interviewing skills, and secondarily to demonstrating resident competence…

Evaluación agronómica de accesiones de Capsicum del banco de germoplasma de la Universidad Nacional de Colombia Sede Palmira

Directory of Open Access Journals (Sweden)

Catherine Pardey Rodríguez

2009-01-01

Full Text Available En un diseño de bloques incompletos 10 x 10 con tres repeticiones se estudiaron descriptores cuantitativos relacionados con producción por planta, contenido de capsaicina y presencia de virus en 100 accesiones de Capsicum pertenecientes a la Universidad Nacional de Colombia. Las diferencias entre las accesiones fueron explicadas por el contenido de capsaicina, características asociadas con la producción por planta y características del fruto. Se encontró correlación inversa entre el contenido de capsaicina y producción; número de frutos por planta con peso de fruto. La dispersión de las accesiones en el plano cartesiano situó las variedades comerciales Cayenne, Tabasco y Habanero, en función de producción, peso y cantidad de frutos, en posiciones desventajosas con respecto a los promedios generales de las características de las otras accesiones. Cuatro accesiones superaron a Tabasco en contenido de capsaicina. Cuatro tipos de virus (potyvirus, geminivirus y cucumovirus y virus del mosaico del tabaco TMV se presentaron en el lote de evaluación. Los virus actuaron en forma conjunta; los potyvirus con los cucumovirus y TMV; los geminivirus con TMV.

Arabidopsis protein phosphatase DBP1 nucleates a protein network with a role in regulating plant defense.

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José Luis Carrasco

Full Text Available Arabidopsis thaliana DBP1 belongs to the plant-specific family of DNA-binding protein phosphatases. Although recently identified as a novel host factor mediating susceptibility to potyvirus, little is known about DBP1 targets and partners and the molecular mechanisms underlying its function. Analyzing changes in the phosphoproteome of a loss-of-function dbp1 mutant enabled the identification of 14-3-3λ isoform (GRF6, a previously reported DBP1 interactor, and MAP kinase (MAPK MPK11 as components of a small protein network nucleated by DBP1, in which GRF6 stability is modulated by MPK11 through phosphorylation, while DBP1 in turn negatively regulates MPK11 activity. Interestingly, grf6 and mpk11 loss-of-function mutants showed altered response to infection by the potyvirus Plum pox virus (PPV, and the described molecular mechanism controlling GRF6 stability was recapitulated upon PPV infection. These results not only contribute to a better knowledge of the biology of DBP factors, but also of MAPK signalling in plants, with the identification of GRF6 as a likely MPK11 substrate and of DBP1 as a protein phosphatase regulating MPK11 activity, and unveils the implication of this protein module in the response to PPV infection in Arabidopsis.

Severe Outbreak of a Yellow Mosaic Disease on the Yard Long Bean in Bogor, West Java

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TRI ASMIRA DAMAYANTI

2009-06-01

Full Text Available During 2008 crop season, an outbreak of severe yellow mosaic disease on yard long bean (Vigna unguiculata subsp. Sesquipedalis occurred in several farmers’ fields in West Java. Yard long bean var. Parade inoculated manually with extracts from symptomatic leaves showed the symptoms indicating the presence of virus. Symptomatic leaf samples tested positive in enzyme linked immunosorbent assay (ELISA with antibodies to group specific Potyvirus and Cucumber mosaic virus (CMV. Total RNA derived from symptomatic leaves was subjected to reverse transcription-polymerase chain reaction (RT-PCR using primers specific to the cylindrical inclusion (CI protein of potyviruses and CMV coat protein (CP specific primers. Pair wise comparison of sequences obtained from cloned RT-PCR products with corresponding nucleotide sequences in the GenBank confirmed the presence of Bean common mosaic virus strain Blackeye (BCMV-BlC and CMV in the symptomatic beans. Sequences of BCMV and CMV isolates from the beans showed maximum nucleotide sequence identities (92-97% and (90%, respectively with BCMV-BIC and CMV isolates from Taiwan. Each virus isolate also clustered closely with corresponding isolates from Taiwan in a phylogenetic analyses. These results provide first evidence of the occurrence of multiple infection of BCMV-BIC and CMV in the yard long been from Bogor, West Java.

Personal computer (PC) based image processing applied to fluid mechanics research

Science.gov (United States)

Cho, Y.-C.; Mclachlan, B. G.

1987-01-01

A PC based image processing system was employed to determine the instantaneous velocity field of a two-dimensional unsteady flow. The flow was visualized using a suspension of seeding particles in water, and a laser sheet for illumination. With a finite time exposure, the particle motion was captured on a photograph as a pattern of streaks. The streak pattern was digitized and processsed using various imaging operations, including contrast manipulation, noise cleaning, filtering, statistical differencing, and thresholding. Information concerning the velocity was extracted from the enhanced image by measuring the length and orientation of the individual streaks. The fluid velocities deduced from the randomly distributed particle streaks were interpolated to obtain velocities at uniform grid points. For the interpolation a simple convolution technique with an adaptive Gaussian window was used. The results are compared with a numerical prediction by a Navier-Stokes commputation.

Personal Computer (PC) based image processing applied to fluid mechanics

Science.gov (United States)

Cho, Y.-C.; Mclachlan, B. G.

1987-01-01

A PC based image processing system was employed to determine the instantaneous velocity field of a two-dimensional unsteady flow. The flow was visualized using a suspension of seeding particles in water, and a laser sheet for illumination. With a finite time exposure, the particle motion was captured on a photograph as a pattern of streaks. The streak pattern was digitized and processed using various imaging operations, including contrast manipulation, noise cleaning, filtering, statistical differencing, and thresholding. Information concerning the velocity was extracted from the enhanced image by measuring the length and orientation of the individual streaks. The fluid velocities deduced from the randomly distributed particle streaks were interpolated to obtain velocities at uniform grid points. For the interpolation a simple convolution technique with an adaptive Gaussian window was used. The results are compared with a numerical prediction by a Navier-Stokes computation.

Contribution à l’étude du mouvement systémique de deux phytovirus : analyse comparative du transcriptome de cellules compagnes infectées et saines

OpenAIRE

Chapuis , Sophie

2014-01-01

Phytoviruses invade systemically their host plant through the phloem. As this viral step remains poorly understood, the aim of this work was to identify, using a transcriptomic approach, genes specifically deregulated in companion cell (CC) during infection with the Polerovirus Turnip yellows virus (TuYV) and the Potyvirus Lettuce mosaic virus (LMV). CC protoplasts were prepared and sorted by FACS technology. Extracted RNA were further analyzed by RNAseq andCATMA microarrays. Although conside...

International Congress on High Speed Photography and Photonics, 17th, Pretoria, Republic of South Africa, Sept. 1-5, 1986, Proceedings. Volumes 1 & 2

Science.gov (United States)

McDowell, M. W.; Hollingworth, D.

1986-01-01

The present conference discusses topics in mining applications of high speed photography, ballistic, shock wave and detonation studies employing high speed photography, laser and X-ray diagnostics, biomechanical photography, millisec-microsec-nanosec-picosec-femtosec photographic methods, holographic, schlieren, and interferometric techniques, and videography. Attention is given to such issues as the pulse-shaping of ultrashort optical pulses, the performance of soft X-ray streak cameras, multiple-frame image tube operation, moire-enlargement motion-raster photography, two-dimensional imaging with tomographic techniques, photochron TV streak cameras, and streak techniques in detonics.

“Hot Hand” in the National Basketball Association Point Spread Betting Market: A 34-Year Analysis

Directory of Open Access Journals (Sweden)

Benjamin Waggoner

2014-11-01

Full Text Available Several articles have looked at factors that affect the adjustments of point spreads, based on hot hands or streaks, for smaller durations of time. This study examines these effects for 34 regular seasons in the National Basketball Association (NBA. Estimating a Seemingly Unrelated Regression model using all 34 seasons, all streaks significantly impacted point spreads and difference in actual points. When estimating each season individually, differences emerged particularly examining winning and losing streaks of six games or more. The results indicate both the presence of momentum effects and the gambler’s fallacy.

Intensified CCD for ultrafast diagnostics

International Nuclear Information System (INIS)

Cheng, J.; Tripp, G.; Coleman, L.

1978-01-01

Many of the present laser fusion diagnostics are recorded on either ultrafast streak cameras or on oscilloscopes. For those experiments in which a large volume of data is accumulated, direct computer processing of the information becomes important. We describe an approach which uses a RCA 52501 back-thinned CCD sensor to obtain direct electron readouts for both the streak camera and the CRT. Performance of the 100 GHz streak camera and the 4 GHz CRT are presented. Design parameters and computer interfacing for both systems are described in detail

Protocol and data INCA trial

NARCIS (Netherlands)

Pelser, L.M.; Frankena, K.; Toorman, J.; Savelkoul, H.F.J.; Dubios, R.; Rodrigues Pereira, R.; Haagen, T.A.; Rommelse, N.N.; Buitelaar, J.K.

2009-01-01

The file INCAdata.csv contains the data collected during the INCA study (100 records with 152 variables). The data have been analysed and outcomes were published by Pelsser et al (2011): "Effects of a restricted elimination diet on the behaviour of children with attention-deficit hyperactivity

Clinical Skills Verification in General Psychiatry: Recommendations of the ABPN Task Force on Rater Training

Science.gov (United States)

Jibson, Michael D.; Broquet, Karen E.; Anzia, Joan Meyer; Beresin, Eugene V.; Hunt, Jeffrey I.; Kaye, David; Rao, Nyapati Raghu; Rostain, Anthony Leon; Sexson, Sandra B.; Summers, Richard F.

2012-01-01

Objective: The American Board of Psychiatry and Neurology (ABPN) announced in 2007 that general psychiatry training programs must conduct Clinical Skills Verification (CSV), consisting of observed clinical interviews and case presentations during residency, as one requirement to establish graduates' eligibility to sit for the written certification…

Chemical Safety Vulnerability Working Group report. Volume 1

Energy Technology Data Exchange (ETDEWEB)

1994-09-01

The Chemical Safety Vulnerability (CSV) Working Group was established to identify adverse conditions involving hazardous chemicals at DOE facilities that might result in fires or explosions, release of hazardous chemicals to the environment, or exposure of workers or the public to chemicals. A CSV Review was conducted in 148 facilities at 29 sites. Eight generic vulnerabilities were documented related to: abandoned chemicals and chemical residuals; past chemical spills and ground releases; characterization of legacy chemicals and wastes; disposition of legacy chemicals; storage facilities and conditions; condition of facilities and support systems; unanalyzed and unaddressed hazards; and inventory control and tracking. Weaknesses in five programmatic areas were also identified related to: management commitment and planning; chemical safety management programs; aging facilities that continue to operate; nonoperating facilities awaiting deactivation; and resource allocations. Volume 1 contains the Executive summary; Introduction; Summary of vulnerabilities; Management systems weaknesses; Commendable practices; Summary of management response plan; Conclusions; and a Glossary of chemical terms.

Effects of chronic exposure of seeds and seeds and seedlings of Arabidopsis Thaliana by low doses of γ-radiation on plant growth and development

International Nuclear Information System (INIS)

Litvinov, S.V.

2013-01-01

Article presents the results of research on the effect of chronic γ-irradiation in small doses on A. Thaliana seedlings and seeds growth and development. Exposure rate for the seeds was 0,45 mGy/h (total absorbed dose 30 cSv) and 0,18 mGy/h for seedlings (total absorbed dose 3 cSv). Statistically significant differences in the germination capacity, in the time of primary leaf rosette formation, in the hypocotyl length were revealed between irradiated and control seedlings. Plants from irradiated seeds differed by the higher growth rate of stem, they flowered and fruited earlier, but they also characterized on average shorter vegetative cycle in comparison with control plants. In our experiments it is shown significant impact of chronic low doses of γ-irradiation of seeds and seedlings on the ontogeny in A. Thaliana and on the parameters that reflect the growth and development of the irradiated plants

Towards Corporate Shared Value in Retail Sector: A Comparative Study over Grocery and Banking Between Italy and the UK

Directory of Open Access Journals (Sweden)

Elena Candelo

2015-10-01

Full Text Available The research investigates the extent to which Banking and Grocery retailers use Corporate Social Responsibility (CSR in accordance to evolving consumers’ expectations and build a strategic model of Corporate Shared Value (CSV to strive for economic and social returns simultaneously. The paper adopts a qualitative approach, based on the comparative case study methodology by investigating a sample of twelve Banking and Grocery retailers in Italy and the UK. Differences and similarities in CSR as new strategic model among countries and retail sectors emerge, with UK companies from both the sectors showing the most formalized integration of CSR within their business strategy. The chance for both Italian and UK retail companies is to adopt the best practices emerging from the case studies to turn their CSR programs into a strategic business model of CSV that will allow a stronger retailer-consumer relationship based on social improvements and a reinforcement of their brand image.

Chemical Safety Vulnerability Working Group report. Volume 1

International Nuclear Information System (INIS)

1994-09-01

The Chemical Safety Vulnerability (CSV) Working Group was established to identify adverse conditions involving hazardous chemicals at DOE facilities that might result in fires or explosions, release of hazardous chemicals to the environment, or exposure of workers or the public to chemicals. A CSV Review was conducted in 148 facilities at 29 sites. Eight generic vulnerabilities were documented related to: abandoned chemicals and chemical residuals; past chemical spills and ground releases; characterization of legacy chemicals and wastes; disposition of legacy chemicals; storage facilities and conditions; condition of facilities and support systems; unanalyzed and unaddressed hazards; and inventory control and tracking. Weaknesses in five programmatic areas were also identified related to: management commitment and planning; chemical safety management programs; aging facilities that continue to operate; nonoperating facilities awaiting deactivation; and resource allocations. Volume 1 contains the Executive summary; Introduction; Summary of vulnerabilities; Management systems weaknesses; Commendable practices; Summary of management response plan; Conclusions; and a Glossary of chemical terms

Population structure within lineages of Wheat streak mosaic virus derived from a common founding event exhibits stochastic variation inconsistent with the deterministic quasi-species model

International Nuclear Information System (INIS)

French, Roy; Stenger, Drake C.

2005-01-01

Structure of Wheat streak mosaic virus (WSMV) populations derived from a common founding event and subjected to serial passage at high multiplicity of infection (MOI) was evaluated. The founding population was generated by limiting dilution inoculation. Lineages of known pedigree were sampled at passage 9 (two populations) and at passage 15, with (three populations) or without mixing (four populations) of lineages at passage 10. Polymorphism within each population was assessed by sequencing 17-21 clones containing a 1371 nt region (WSMV-Sidney 81 nts 8001-9371) encompassing the entire coat protein cistron and flanking regions. Mutation frequency averaged ∼5.0 x 10 -4 /nt across all populations and ranged from 2.4 to 11.6 x 10 -4 /nt within populations, but did not consistently increase or decrease with the number of passages removed from the founding population. Shared substitutions (19 nonsynonymous, 10 synonymous, and 3 noncoding) occurred at 32 sites among 44 haplotypes. Only four substitutions became fixed (frequency = 100%) within a population and nearly one third (10/32) never achieved a frequency of 10% or greater in any sampled population. Shared substitutions were randomly distributed with respect to genome position, with transitions outnumbering transversions 5.4:1 and a clear bias for A to G and U to C substitutions. Haplotype composition of each population was unique with complexity of each population varying unpredictably, in that the number and frequency of haplotypes within a lineage were not correlated with number of passages removed from the founding population or whether the population was derived from a single or mixed lineage. The simplest explanation is that plant virus lineages, even those propagated at high MOI, are subject to frequent, narrow genetic bottlenecks during systemic movement that result in low effective population size and stochastic changes in population structure upon serial passage

Moving metal artifact reduction in cone-beam CT scans with implanted cylindrical gold markers

International Nuclear Information System (INIS)

Toftegaard, Jakob; Fledelius, Walther; Worm, Esben S.; Poulsen, Per R.; Seghers, Dieter; Huber, Michael; Brehm, Marcus; Elstrøm, Ulrik V.

2014-01-01

Purpose: Implanted gold markers for image-guided radiotherapy lead to streaking artifacts in cone-beam CT (CBCT) scans. Several methods for metal artifact reduction (MAR) have been published, but they all fail in scans with large motion. Here the authors propose and investigate a method for automatic moving metal artifact reduction (MMAR) in CBCT scans with cylindrical gold markers. Methods: The MMAR CBCT reconstruction method has six steps. (1) Automatic segmentation of the cylindrical markers in the CBCT projections. (2) Removal of each marker in the projections by replacing the pixels within a masked area with interpolated values. (3) Reconstruction of a marker-free CBCT volume from the manipulated CBCT projections. (4) Reconstruction of a standard CBCT volume with metal artifacts from the original CBCT projections. (5) Estimation of the three-dimensional (3D) trajectory during CBCT acquisition for each marker based on the segmentation in Step 1, and identification of the smallest ellipsoidal volume that encompasses 95% of the visited 3D positions. (6) Generation of the final MMAR CBCT reconstruction from the marker-free CBCT volume of Step 3 by replacing the voxels in the 95% ellipsoid with the corresponding voxels of the standard CBCT volume of Step 4. The MMAR reconstruction was performed retrospectively using a half-fan CBCT scan for 29 consecutive stereotactic body radiation therapy patients with 2–3 gold markers implanted in the liver. The metal artifacts of the MMAR reconstructions were scored and compared with a standard MAR reconstruction by counting the streaks and by calculating the standard deviation of the Hounsfield units in a region around each marker. Results: The markers were found with the same autosegmentation settings in 27 CBCT scans, while two scans needed slightly changed settings to find all markers automatically in Step 1 of the MMAR method. MMAR resulted in 15 scans with no streaking artifacts, 11 scans with 1–4 streaks, and 3 scans

Generación de anticuerpos policlonales para la detección de la variante genotípica GIII de PVY, en cultivos de tomate de árbol y papa de Colombia

Directory of Open Access Journals (Sweden)

Yuliana Gallo García

2012-04-01

Full Text Available Normal 0 21 false false false ES-CO X-NONE X-NONE MicrosoftInternetExplorer4 Título en ingles: Generation of policlonal antibodies for detection of the PVY genotypic variant GIII in tamarillo and potato crops from Colombia Resumen: El potyvirus PVY es uno de los agentes causales más frecuentemente asociados a problemas virales en cultivos de papa y tomate de árbol en Colombia. Dada la importancia económica de las enfermedades causadas por PVY y a la necesidad de generar material de siembra certificado por su sanidad viral, es fundamental la generación de herramientas de diagnóstico que permitan la detección temprana de este virus. En este trabajo se reporta la obtención de anticuerpos policlonales específicos, útiles para la detección del genotipo III de PVY (GIII, una de las tres variantes que recientemente han sido reportadas en cultivos de papa y tomate de árbol de la región Andina de Colombia. Como antígeno, se utilizó un péptido sintético diseñado a partir de la región variable del extremo N-terminal del gen de la cápside viral. La sensibilidad de los anticuerpos fue evaluada mediante pruebas de ELISA y dot-blot utilizando péptidos sintéticos. Se realizó una prueba piloto para validar el uso de los anticuerpos a partir de plantas sintomáticas y asintomáticas obtenidas de una región donde confluyen cultivos de ambas solanáceas, encontrándose que los anticuerpos generados ofrecen mayores niveles de detección que los anticuerpos comerciales comúnmente utilizados para detectar los serotipos PVY-O,C y PVY-N de este virus. Palabras clave: anticuerpos policlonales; ELISA; potyvirus; RT-PCR; virus Y de la papa Abstract: PVY is one of the potyvirus more frequently associated with viral infections in tomato and tamarillo crops in Colombia. Due to the economic impact of PVY and the need to certify seeds as virus-free it is important to develop diagnostic tools that allow its premature detection. In this work, the

Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation.

Science.gov (United States)

Xu, Donglin; Zhou, Guohui

2017-02-10

Virus-derived siRNAs (vsiRNAs)-mediated RNA silencing plays important roles in interaction between plant viruses and their hosts. Southern rice black-streaked dwarf virus (SRBSDV) is a newly emerged devastating rice reovirus with ten dsRNA genomic segments. The characteristics of SRBSDV-derived siRNAs and their biological implications in SRBSDV-rice interaction remain unexplored. VsiRNAs profiling from SRBSDV-infected rice samples was done via small RNA deep sequencing. The putative rice targets of abundantly expressed vsiRNAs were bioinformatically predicted and subjected to functional annotation. Differential expression analysis of rice targets and RNA silencing components between infected and healthy samples was done using RT-qPCR. The vsiRNA was barely detectable at 14 days post infection (dpi) but abundantly present along with elevated expression level of the viral genome at 28 dpi. From the 28-dpi sample, 70,878 reads of 18 ~ 30-nt vsiRNAs were recognized (which mostly were 21-nt and 22-nt), covering 75 ~ 91% of the length of the ten genomic segments respectively. 86% of the vsiRNAs had a rice genes, including several types of host resistance or pathogenesis related genes encoding F-box/LRR proteins, receptor-like protein kinases, universal stress proteins, tobamovirus multiplication proteins, and RNA silencing components OsDCL2a and OsAGO17 respectively, some of which showed down regulation in infected plants in RT-qPCR. GO and KEGG classification showed that a majority of the predicted targets were related to cell parts and cellular processes and involved in carbohydrate metabolism, translation, and signal transduction. The silencing component genes OsDCL2a, OsDCL2b, OsDCL4, and OsAGO18 were down regulated, while OsAGO1d, OsAGO2, OsRDR1 and OsRDR6 were up regulated, significantly, upon SRBSDV infection. SRBSDV can regulate the expression of rice RNA silencing pathway components and the virus might compromise host defense and influence host

It-baseret inklusion af elever med udviklings- og opmærksomhedsproblemer i folkeskolen

DEFF Research Database (Denmark)

Voldborg, Hanne; Sorensen, Elsebeth Korsgaard; De Lopez, Kristine M. Jensen

med ADHD); Kristian Andreasen (spiludvikler og direktør i firmaet Kanda; udvikler af læringsspillet Runerod); Rune Gråbæk (pædagogisk konsulent, Ringsted kommune) samt Henrik Grum (pædagogisk leder, CSV Sydfyn; tidligere medarbejder på projektet). Projektledelsen og projektmedarbejderne vil derudover...

Experimental analysis of control mechanisms in somite segmentation in avian embryos. II. Reduction of material in the gastrula stages of the chick.

Science.gov (United States)

Bellairs, R; Veini, M

1984-02-01

A new theory of control of somite segmentation in chick embryos is proposed. This supposses that tiny clusters of already programmed cells are present throughout the presumptive somite area at stage 4, but that in order to fulfill their destiny they probably depend on the addition of further cells from the primitive streak. Evidence is based on the two groups of experiments: a) Experiments involving transection across the primitive streak at various stages, (which results in a 'tail' which possesses mesodermal derivatives) and across the segmental plate (which results in a 'tail' lacking mesodermal derivatives). b) Experiments in which parts of embryos have been explanted with or without their primitive streak. It is suggested that the initial clusters of pre-programmed cells move further and further posteriorly, developing into somitomeres (the precursors of true somites) only as they receive re-inforcements from the primitive streak or, ultimately, from the tail bud.

Análise da presença de vírus em alho semente da segunda e quarta gerações, produzidos por termoterapia e cultura de tecido

Directory of Open Access Journals (Sweden)

Milena Leite de Oliveira

2014-03-01

Full Text Available O alho (Allium sativum L. pode estar naturalmente infectado por um complexo de vírus filamentosos pertencentes aos gêneros Potyvirus, Carlavirus e Allexivirus. O acúmulo destes vírus se dá, principalmente, pela sua propagação vegetativa através dos bulbilhos. Como a planta de alho cultivada não produz semente verdadeira em todo o mundo, a única forma de se obter plantas livres de vírus se dá pela cultura de tecidos dos ápices caulinares e termoterapia. Utilizando estas técnicas, alhos sementes foram produzidos na FCA- UNESP de Botucatu e avaliados via RT-PCR para a presença de potyvirus, carlavirus e allexivirus. Na segunda geração dos microbulbilhos propagados em casa de vegetação, 6,6% de infecção foi verificada por allexivirus. Já na quarta geração foi observada incidência de 60% com allexivirus, 35% com potyvirus e todas foram negativas para carlavirus. A alta taxa de infecção por allexivirus pode estar relacionada à maior dificuldade de remoção de espécies de vírus pertencentes a este gênero, como também já observado por outros autores, pela infecção e transmissão de vírus pelo ácaro, Aceriatulipae, durante o armazenamento dos bulbos de um ano a outro. O alho na quarta geração corresponde a bulbilhos com peso inferior a 1 grama e que não haviam sido selecionados para multiplicação comercial. A seleção para tamanho do bulbilho tem efeito positivo na escolha de bulbilhos com menores taxas de infecção por vírus, já que a técnica de termoterapia e cultura de tecidos não elimina totalmente os vírus. Os resultados também enfatizam a necessidade de se realizar fumigação no alho semente armazenado de um ano a outro a fim de evitar a transmissão de allexivirus durante o armazenamento.

Tobacco etch virus protein P1 traffics to the nucleolus and associates with the host 60S ribosomal subunits during infection.

Science.gov (United States)

Martínez, Fernando; Daròs, José-Antonio

2014-09-01

The genus Potyvirus comprises a large group of positive-strand RNA plant viruses whose genome encodes a large polyprotein processed by three viral proteinases. P1 protein, the most amino-terminal product of the polyprotein, is an accessory factor stimulating viral genome amplification whose role during infection is not well understood. We infected plants with Tobacco etch virus (TEV; genus Potyvirus) clones in which P1 was tagged with a fluorescent protein to track its expression and subcellular localization or with an affinity tag to identify host proteins involved in complexes in which P1 also takes part during infection. Our results showed that TEV P1 exclusively accumulates in infected cells at an early stage of infection and that the protein displays a dynamic subcellular localization, trafficking in and out of the nucleus and nucleolus during infection. Inside the nucleolus, P1 particularly targets the dense granular component. Consistently, we found functional nucleolar localization and nuclear export signals in TEV P1 sequence. Our results also indicated that TEV P1 physically interacts with the host 80S cytoplasmic ribosomes and specifically binds to the 60S ribosomal subunits during infection. In vitro translation assays of reporter proteins suggested that TEV P1 stimulates protein translation, particularly when driven from the TEV internal ribosome entry site. These in vitro assays also suggested that TEV helper-component proteinase (HC-Pro) inhibits protein translation. Based on these findings, we propose that TEV P1 stimulates translation of viral proteins in infected cells. In this work, we researched the role during infection of tobacco etch virus P1 protease. P1 is the most mysterious protein of potyviruses, a relevant group of RNA viruses infecting plants. Our experiments showed that the viral P1 protein exclusively accumulates in infected cells at an early stage of infection and moves in and out of the nucleus of infected cells, particularly

Efficacy of periodically rotated overlapping parallel lines with enhanced reconstruction (PROPELLER) for shoulder magnetic resonance (MR) imaging

Energy Technology Data Exchange (ETDEWEB)

Nagatomo, Kazuya, E-mail: nkgzmyn.1103@gmail.com [Department of Health Sciences, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582 (Japan); Yabuuchi, Hidetake, E-mail: h-yabu@med.kyushu-u.ac.jp [Department of Health Sciences, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582 (Japan); Yamasaki, Yuzo, E-mail: yyama@radiol.med.kyushu-u.ac.jp [Department of Clinical Radiology, Graduate of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582 (Japan); Narita, Hiroshi, E-mail: hiroshi.narita.ty@hitachi.com [Hitachi Medical Corporation, 3-26-29 Hakataekimae, Hakata-ku, Fukuoka 812-0011 (Japan); Kumazawa, Seiji, E-mail: s_kmzw@hs.med.kyushu-u.ac.jp [Department of Health Sciences, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582 (Japan); Kojima, Tsukasa, E-mail: k.tsukasa.0910@gmail.com [Department of Health Sciences, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582 (Japan); Sakai, Noriyuki, E-mail: noriyuki.sakai0602@gmail.com [Department of Health Sciences, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582 (Japan); Masaki, Masahumi, E-mail: m-masaki@kimura-hosp.or.jp [Department of Radiology, Kimura Hospital, 2-13-19 Chiyo, Hakata-ku, Fukuoka 812-0044 (Japan); Kimura, Hiroshi, E-mail: h-kimura@kimura-hosp.or.jp [Department of Surgery, Kimura Hospital, 2-13-19 Chiyo, Hakata-ku, Fukuoka 812-0044 (Japan)

2016-10-15

Objectives: To elucidate the utility of PROPELLER for motion artefact reduction on shoulder MRI and to examine the influence of streak artefacts on diagnosis of clinical images. Methods: 15 healthy volunteers and 48 patients underwent shoulder MRI with/without PROPELLER (coronal oblique proton density-fast spin echo [PD-FSE], sagittal oblique T2-FSE). In a volunteer study, all sequences were performed in both static and exercise-loaded conditions. Two radiologists graded artefacts and delineation of various anatomical structures in the volunteer study and motion and streak artefacts in the clinical study. Mean scores were compared between sequences with/without PROPELLER. In the clinical study, mean scores of motion artefacts were compared with mean scores of streak artefacts. Wilcoxon signed-rank test was used for all comparisons. Results: In both studies, PROPELLER significantly reduced motion artefacts (P < 0.05). In the volunteer study, it significantly improved delineations in sagittal oblique images in the exercise-loaded condition (P < 0.05). In the clinical study, streak artefacts appeared dominantly on images with PROPELLER (P < 0.05), but influenced diagnosis to a lesser extent than motion artefacts. Conclusion: PROPELLER can reduce motion artefacts in shoulder MRI. While it does cause streak artefacts, it affects diagnosis to a lesser extent.

FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool

Energy Technology Data Exchange (ETDEWEB)

Brown, Joseph; Pirrung, Meg; McCue, Lee Ann

2017-06-09

FQC is software that facilitates large-scale quality control of FASTQ files by carrying out a QC protocol, parsing results, and aggregating quality metrics within and across experiments into an interactive dashboard. The dashboard utilizes human-readable configuration files to manipulate the pages and tabs, and is extensible with CSV data.

75 FR 41579 - Submitting Airline Data via the Internet

Science.gov (United States)

2010-07-16

... via the Internet; Final Rule #0;#0;Federal Register / Vol. 75 , No. 136 / Friday, July 16, 2010... Airline Data via the Internet AGENCY: Office of the Secretary, DOT. ACTION: Final rule. SUMMARY: The U.S..., operational and consumer data reports electronically via the Internet using the comma separated value (CSV...

Experimental Study of SBS Suppression via White Noise Phase Modulation

Science.gov (United States)

2014-02-10

fiber optical parametric amplifiers,” Opt. Communications 283, 2607-2610 (2010). [8] Coles, J. B., Kuo, B. P.-P., Alie , N., Moro, S., Bres, C.-S...V., Farley, K., Leveille, R., Galipeau, J., Majid , I., Christensen, S., Samson, B., Tankala, K. “kW level narrow linewidth Yb fiber amplifiers for

Instrumental methods for analysis of some elements in flour

International Nuclear Information System (INIS)

Zagrodzki, P.; Dutkiewicz, E.M.; Malec, P.; Krosniak, M.; Knap, W.

1993-10-01

For ten various brands of flour contents of chosen (heavy) elements were determined by means of ICP, GF-AAS, PIXE and ASV/CSV methods. General performance of participating laboratories as well as pros and cons of different analytical methods were compared and discussed. (author). 6 refs, 6 figs, 7 tabs

Antagonistic properties of microogranisms associated with cassava ...

African Journals Online (AJOL)

The antagonistic properties of indigenous microflora from cassava starch, flour and grated cassava were investigated using the conventional streak, novel ring and well diffusion methods. Antagonism was measured by zone of inhibition between the fungal plug and bacterial streak/ring. Bacillus species were more effective ...

Ion diode optics: measurement of divergence and aiming of beams for transport to light-ion ICF targets

International Nuclear Information System (INIS)

Krastelev, E.G.; Kniazev, B.A.; Lindholm, F.; Hammer, D.A.; Kusse, B.R.; Greenly, J.B.

1996-01-01

Diagnostic development for measurements of anode plasma structure and ion beam local aiming and micro-divergence are being developed on the COBRA accelerator at Cornell University. Results of streaked-scintillator and tracer target beam diagnostics, and streaked anode light imaging are described. (author). 5 figs., 1 ref

Ion diode optics: measurement of divergence and aiming of beams for transport to light-ion ICF targets

Energy Technology Data Exchange (ETDEWEB)

Krastelev, E G; Kniazev, B A; Lindholm, F; Hammer, D A; Kusse, B R; Greenly, J B [Cornell Univ., Ithaca, NY (United States). Lab. of Plasma Studies

1997-12-31

Diagnostic development for measurements of anode plasma structure and ion beam local aiming and micro-divergence are being developed on the COBRA accelerator at Cornell University. Results of streaked-scintillator and tracer target beam diagnostics, and streaked anode light imaging are described. (author). 5 figs., 1 ref.

Heritable, De Novo Resistance to Leaf Rust and Other Novel Traits in Selfed Descendants of Wheat Responding to Inoculation with Wheat Streak Mosaic Virus

Science.gov (United States)

Seifers, Dallas L.; Haber, Steve; Martin, Terry J.; McCallum, Brent D.

2014-01-01

Stable resistance to infection with Wheat streak mosaic virus (WSMV) can be evolved de novo in selfing bread wheat lines subjected to cycles of WSMV inoculation and selection of best-performing plants or tillers. To learn whether this phenomenon might be applied to evolve resistance de novo to pathogens unrelated to WSMV, we examined the responses to leaf rust of succeeding generations of the rust- and WSMV-susceptible cultivar ‘Lakin’ following WSMV inoculation and derived rust-resistant sublines. After three cycles of the iterative protocol five plants, in contrast to all others, expressed resistance to leaf and stripe rust. A subset of descendant sublines of one of these, ‘R1’, heritably and uniformly expressed the new trait of resistance to leaf rust. Such sublines, into which no genes from a known source of resistance had been introgressed, conferred resistance to progeny of crosses with susceptible parents. The F1 populations produced from crosses between, respectively, susceptible and resistant ‘Lakin’ sublines 4-3-3 and 4-12-3 were not all uniform in their response to seedling inoculation with race TDBG. In seedling tests against TDBG and MKPS races the F2s from F1 populations that were uniformly resistant had 3∶1 ratios of resistant to susceptible individuals but the F2s from susceptible F1 progenitors were uniformly susceptible. True-breeding lines derived from resistant individuals in F2 populations were resistant to natural stripe and leaf rust inoculum in the field, while the ‘Lakin’ progenitor was susceptible. The next generation of six of the ‘Lakin’-derived lines exhibited moderate to strong de novo resistance to stem rust races TPMK, QFCS and RKQQ in seedling tests while the ‘Lakin’ progenitor was susceptible. These apparently epigenetic effects in response to virus infection may help researchers fashion a new tool that expands the range of genetic resources already available in adapted germplasm. PMID:24497941

Proceedings of the 18th international congress on high speed photography and photonics

International Nuclear Information System (INIS)

Anon.

1988-01-01

The subjects addressed at the conference presented in this book include image converter and intensifier cameras; opto-mechanical high speed cameras; X-ray generator and radiography; and Holography and interferometry. The papers include Flash x-ray cineradiography; New picosecond synchroscan streak image tube; and Streak camera CCD readout system

78 FR 61505 - Endangered and Threatened Wildlife and Plants; Designation of Critical Habitat for Taylor's...

Science.gov (United States)

2013-10-03

... final rule as appropriate. Comments From Peer Reviewers In accordance with our peer review policy... designation for the streaked horned lark. The Tribe is currently working with the Service and the Corps to... maintaining and protecting habitat for listed species (including the streaked horned lark and western snowy...

Heterologous RNA-silencing suppressors from both plant- and animal-infecting viruses support plum pox virus infection.

Science.gov (United States)

Maliogka, Varvara I; Calvo, María; Carbonell, Alberto; García, Juan Antonio; Valli, Adrian

2012-07-01

HCPro, the RNA-silencing suppressor (RSS) of viruses belonging to the genus Potyvirus in the family Potyviridae, is a multifunctional protein presumably involved in all essential steps of the viral infection cycle. Recent studies have shown that plum pox potyvirus (PPV) HCPro can be replaced successfully by cucumber vein yellowing ipomovirus P1b, a sequence-unrelated RSS from a virus of the same family. In order to gain insight into the requirement of a particular RSS to establish a successful potyviral infection, we tested the ability of different heterologous RSSs from both plant- and animal-infecting viruses to substitute for HCPro. Making use of engineered PPV chimeras, we show that PPV HCPro can be replaced functionally by some, but not all, unrelated RSSs, including the NS1 protein of the mammal-infecting influenza A virus. Interestingly, the capacity of a particular RSS to replace HCPro does not correlate strictly with its RNA silencing-suppression strength. Altogether, our results suggest that not all suppression strategies are equally suitable for efficient escape of PPV from the RNA-silencing machinery. The approach followed here, based on using PPV chimeras in which an under-consideration RSS substitutes for HCPro, could further help to study the function of diverse RSSs in a 'highly sensitive' RNA-silencing context, such as that taking place in plant cells during the process of a viral infection.

Molecular dynamics studies of tweed and ω-phase instabilities in B2Ni62.5Al37.5 alloys

International Nuclear Information System (INIS)

Becquart, C.; Clapp, P.C.; Rifkin, J.A.

1992-01-01

Diffuser TEM and x-ray data has been reported by several research groups that has been interpreted in terms of both tweed and ω-phase instabilities. This patent describes computer simulations of 1,024 atom arrays that were run at various temperatures using the Voter-Chen Embedded Atom Method interactions. If the extra Ni atoms were placed at random on the Al sub-lattice of the B2 structure, at low temperatures both left-angle 110 right-angle and left-angle 112 right-angle diffuse streaking were observed in reciprocal lattice plots, indicative of tweed and ω-phase instabilities, respectively. The atomic displacements causing the left-angle 110 right-angle diffuse streaking could generally be classified as {110} left-angle 1 - 10 right-angle local shears, in agreement with accepted models of tweed. However, the displacements producing the left-angle 112 right-angle streaking were best described as coordinated atom row motions in left-angle 111 right-angle interplanar collapse. Both types of diffuse streaking deceased with increasing temperature, but the left-angle 110 right-angle type was stronger at all temperatures and persisted to higher temperatures. Furthermore, the atomic displacements producing the streaking were static at low temperatures (persistence times greater than 1000 vibrational periods) but became dynamic at higher temperatures (persistence times of the order of a few vibrational periods). Another interesting result was that by merely rearranging the extra Ni atoms into an ordered superlattice pattern, virtually no diffuse streaking of any type was observed at any temperature, strongly suggesting that compositional disorder (or other kinds of point defects) are essential to induce tweed instabilities

Evaluating fundamental life-history traits for Tobacco etch potyvirus

OpenAIRE

Tromas, Nicolas

2013-01-01

Los virus de ARN son probablemente algunos de los parásitos más extendidos que se pueden encontrar en todas las formas de vida. Estos agentes infecciosos parecen particularmente propensos a causar enfermedades emergentes en plantas, seres humanos y otros animales. Sus habilidades para escapar al sistema inmune, evadir estrategias antivirales o para infectar a nuevas especies son una consecuencia directa de su enorme capacidad para evolucionar rápidamente. Comprender los procesos básicos del c...

Rapid and sensitive detection of potyvirus infecting tropical tuber ...

African Journals Online (AJOL)

Yomi

2012-01-16

Jan 16, 2012 ... tropical tuber crops using genus specific primers and probes. Binoy Babu ... diagnosis of plant viral diseases (Clark and Adams, 1977;. Flegg and Clark ..... Network Project on Diagnostics of Emerging Plant. Viruses” and the ...

Sadhana | Indian Academy of Sciences

Indian Academy of Sciences (India)

Ductile streaks were obtained more easily with pyrex rather than with BK 7 glass thus necessitating very little time for polishing. Ductile streaks appeared in abundance on germanium rather than silicon. Both the novel grinding techniques were used on CNC machining centres. pp 925-932. Machining and metrology systems ...

Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling

DEFF Research Database (Denmark)

Uzarowska, Anna; Dionisio, Giuseppe; Sarholz, Barbara

2009-01-01

Background The potyviruses sugarcane mosaic virus (SCMV) and maize dwarf mosaic virus (MDMV) are major pathogens of maize worldwide. Two loci, Scmv1 and Scmv2, have ealier been shown to confer complete resistance to SCMV. Custom-made microarrays containing previously identified SCMV resistance...... the effectiveness and reliability of the combination of different expression profiling approaches for the identification and validation of candidate genes. Genes identified in this study represent possible future targets for manipulation of SCMV resistance in maize....

Evaluation of the occupational X-rays dose of the medical staff in a cardiac catheterization laboratory using an acrylic phantom and semiconductor dosimeter.

Science.gov (United States)

Pan, Lung Fa; Kittipayak, Samrit; Yen, Shan Lin; Pan, Lung Kwang; Lin, Cheng Hsun

2016-01-01

The occupational X-rays doses of medical staff in a cardiac catheterization laboratory were evaluated. Four customized acrylic phantoms were used to simulate a patient, medical doctor, assistant, and radiologist to evaluate the in-situ X-rays exposure dose using semiconductor dosimeters. The exposure dose was measured under three scenarios that were preset to imply: no shielding, moderate shielding and complete shielding for the medical staff in the laboratory. The doses were applied by changing the dose area product (DAP) from 11,000 to 500,000mGy·cm(2) in 14 increments. The estimated annual occupational doses for doctors, assistants and radiologists in scenarios I, II, and III were: I) 35.03, 7.78, 1.95; II) 1.95, 0.78, 0.06; and III) 0.19, 0.10, 0.05cSv, respectively. The derived linear regression line of the exposure dose with respect to the DAP were extrapolated to obtain the minimum detectable level (MDL) of DAP for triggering the staff dosimeters. Accordingly, the minimum annual dose was estimated as 0.05cSv. Additional shielding provided measurable protection to the staff. The protective clothing used in scenarios II and III can reduce the original dose from scenario I to ∼3% (scenario II) and ∼0.5% (scenario III). The annual occupational dose also changed with the various X-rays energy settings. The annual dose increased to 126% when the preset X-rays energy was changed from 70 to 100kVp. The semiconductor dosimeter proved to be an adequate tool for measuring low doses and low dose rates under these circumstances. The dose can be reduce of I) 35.03, 7.78, 1.95; to II) 1.95, 0.78, 0.06 (∼3%); or III) 0.19, 0.10, 0.05 (∼0.5%)cSv, respectively according to different protective scenarios.

Occupational radiation exposure at commercial nuclear power reactors and other facilities 1996: Twenty-ninth annual report. Volume 18

International Nuclear Information System (INIS)

Thomas, M.L.

1998-02-01

This report summarizes the occupational exposure data that are maintained in the US Nuclear Regulatory Commission's (NRC) Radiation Exposure Information and Reporting System (REIRS). The bulk of the information contained in the report was compiled from the 1996 annual reports submitted by six of the seven categories of NRC licensees subject to the reporting requirements of 10 CFR 20.2206. Since there are no geologic repositories for high level waste currently licensed, only six categories will be considered in this report. Annual reports for 1996 were received from a total of 300 NRC licensees, of which 109 were operators of nuclear power reactors in commercial operation. Compilations of the reports submitted by the 300 licensees indicated that 138,310 individuals were monitored, 75,139 of whom received a measurable dose. The collective dose incurred by these individuals was 21,755 person-cSv (person-rem) 2 which represents a 13% decrease from the 1995 value. The number of workers receiving a measurable dose also decreased, resulting in the average measurable dose of 0.29 cSv (rem) for 1996. The average measurable dose is defined to be the total collective dose (TEDE) divided by the number of workers receiving a measurable dose. These figures have been adjusted to account for transient reactor workers. Analyses of transient worker data indicate that 22,348 individuals completed work assignments at two or more licensees during the monitoring year. The dose distributions are adjusted each year to account for the duplicate reporting of transient workers by multiple licensees. In 1996, the average measurable dose calculated from reported was 0.24 cSv (rem). The corrected dose distribution resulted in an average measurable dose of 0.29 cSv (rem)

A dose assessment for a U.S. nuclear test site -- Bikini Atoll

International Nuclear Information System (INIS)

Robison, W.L.; Bogen, K.T.; Conrado, C.L.

1993-07-01

On March 1, 1954, a nuclear weapon test, code-named BRAVO, conducted at Bikini Atoll in the northern Marshall Islands contaminated the major residence island. Here the authors provide a radiological dose assessment for the main residence island, Bikini, using extensive radionuclide concentration data derived from analysis of food crops, ground water, cistern water, fish and other marine species, animals, air, and soil collected at Bikini Island. The unique composition of coral soil greatly alters the relative contribution of cesium-137 and strontium-90 to the total estimated dose relative to expectations based on North American and European soils. Cesium-137 produces 96% of the estimated dose for returning residents, mostly through uptake from the soil to terrestrial food crops but also from external gamma exposure. The estimated maximum annual effective dose is 4.4 mSv y -1 when imported foods, which are now an established part of the diet, are available. The 30-, 50-, and 70-y integral effective doses are 10 cSv, 14 cSv, and 16 cSv, respectively. An analysis of interindividual variability in 0- to 30-y expected integral dose indicates that 95% of Bikini residents would have expected doses within a factor of 3.4 above and 4.8 below the population-average value. A corresponding uncertainty analysis showed that after about 5 y of residence, the 95% confidence limits on population-average dose would be ±35% of its expected value. The authors have evaluated various countermeasures to reduce 137 Cs in food crops. Treatment with potassium reduces the uptake of 137 Cs into food crops, and therefore the ingestion dose, to less than 10% of pretreatment levels and has essentially no negative environmental consequences

An updated dose assessment for a U.S. Nuclear Test Site - Bikini Atoll

International Nuclear Information System (INIS)

Robison, W.L.; Bogen, K.T.; Conrado, C.L.

1995-10-01

On March 1, 1954, a nuclear weapon test, code-named BRAVO, conducted at Bikini Atoll in the northern Marshall Islands contaminated the major residence island. There has been a continuing effort since 1977 to refine dose assessments for resettlement options at Bikini Atoll. Here we provide a radiological dose assessment for the main residence island, Bikini, using extensive radionuclide concentration data derived from analysis of food crops, ground water, cistern water, fish and other marine species, animals, air, and soil collected at Bikini Island as part of our continuing research and monitoring program that began in 1975. The unique composition of coral soil greatly alters the relative contribution of cesium-137 ( 137 Cs) and strontium-90 ( 90 Sr) to the total estimated dose relative to expectations based on North American and European soils. Without counter measures, cesium-137 produces 96% of the estimated dose for returning residents, mostly through uptake from the soil to terrestrial food crops but also from external gamma exposure. The doses are calculated assuming a resettlement date of 1999. The estimated maximum annual effective dose for current island conditions is 4.0 mSv when imported foods, which are now an established part of the diet, are available. The corresponding 30-, 50-, and 70-y integral effective doses are 9.1 cSv, 13 cSv, and 15 cSv, respectively. A corresponding uncertainty analysis showed that after about 5 y of residence, the 95% confidence limits on population-average dose would be ±35% of its expected value. We have evaluated various countermeasures to reduce 137 Cs in food crops. Treatment with potassium reduces the uptake of 137 Cs into food crops, and therefore the ingestion dose, to about 5% of pretreatment levels and has essentially no negative environmental consequences

Occupational radiation exposure at commercial nuclear power reactors and other facilities 1996: Twenty-ninth annual report. Volume 18

Energy Technology Data Exchange (ETDEWEB)

Thomas, M.L. [Nuclear Regulatory Commission, Washington, DC (United States). Div. of Regulatory Applications; Hagemeyer, D. [Science Applications International Corp., Oak Ridge, TN (United States)

1998-02-01

This report summarizes the occupational exposure data that are maintained in the US Nuclear Regulatory Commission`s (NRC) Radiation Exposure Information and Reporting System (REIRS). The bulk of the information contained in the report was compiled from the 1996 annual reports submitted by six of the seven categories of NRC licensees subject to the reporting requirements of 10 CFR 20.2206. Since there are no geologic repositories for high level waste currently licensed, only six categories will be considered in this report. Annual reports for 1996 were received from a total of 300 NRC licensees, of which 109 were operators of nuclear power reactors in commercial operation. Compilations of the reports submitted by the 300 licensees indicated that 138,310 individuals were monitored, 75,139 of whom received a measurable dose. The collective dose incurred by these individuals was 21,755 person-cSv (person-rem){sup 2} which represents a 13% decrease from the 1995 value. The number of workers receiving a measurable dose also decreased, resulting in the average measurable dose of 0.29 cSv (rem) for 1996. The average measurable dose is defined to be the total collective dose (TEDE) divided by the number of workers receiving a measurable dose. These figures have been adjusted to account for transient reactor workers. Analyses of transient worker data indicate that 22,348 individuals completed work assignments at two or more licensees during the monitoring year. The dose distributions are adjusted each year to account for the duplicate reporting of transient workers by multiple licensees. In 1996, the average measurable dose calculated from reported was 0.24 cSv (rem). The corrected dose distribution resulted in an average measurable dose of 0.29 cSv (rem).

Sexual dimorphism and plumage characteristics of juvenile Cape ...

African Journals Online (AJOL)

Juveniles, or birds in their first year, were genetically sexed. Standardised photographs were taken of plucked juvenile breast feathers and analysed using Adobe Photoshop. Pixel counts were taken to analyse the streak coverage of a single feather. A scale from 0 to 3 was used to score streak intensity of the entire breast.

Development of a software for INAA analysis automation

International Nuclear Information System (INIS)

Zahn, Guilherme S.; Genezini, Frederico A.; Figueiredo, Ana Maria G.; Ticianelli, Regina B.

2013-01-01

In this work, a software to automate the post-counting tasks in comparative INAA has been developed that aims to become more flexible than the available options, integrating itself with some of the routines currently in use in the IPEN Activation Analysis Laboratory and allowing the user to choose between a fully-automatic analysis or an Excel-oriented one. The software makes use of the Genie 2000 data importing and analysis routines and stores each 'energy-counts-uncertainty' table as a separate ASCII file that can be used later on if required by the analyst. Moreover, it generates an Excel-compatible CSV (comma separated values) file with only the relevant results from the analyses for each sample or comparator, as well as the results of the concentration calculations and the results obtained with four different statistical tools (unweighted average, weighted average, normalized residuals and Rajeval technique), allowing the analyst to double-check the results. Finally, a 'summary' CSV file is also produced, with the final concentration results obtained for each element in each sample. (author)

A study of the optimal conditions for glucoamylases obtained from ...

African Journals Online (AJOL)

Aghomotsegin

(2004) as modified by Okoye et al. (2013). Tiger nut starch was fractionated into amylose and amylopectin. The wet amylopectin was left open on shelve to allow micro- organisms to grow on it. A loop of each organism was streaked onto potato dextrose agar PDA under the flame of Bunsen burner. Streaks were made from ...

Photocathode development

International Nuclear Information System (INIS)

Hinrichs, C.K.; Estrella, R.M.

1979-01-01

A research program for the development of photocathodes for use in streak image tubes is described. This is one task in the development of a high-resolution, high-speed x-ray streak camera system whose primary application is for diagnostics in underground nuclear testing. There are three objectives in the photocathode development program: (1) the development of new x-ray photocathodes compatible with the requirements of streak tubes; (2) the development of the capability to process high-quality visible light photocathodes as well as x-ray photocathodes; and (3) the design and construction of a transfer photocathode system. Design and construction of all the major components of the transfer photocathode system were completed. Assembly should be completed in early FY 80

Variable features on Mars - Preliminary Mariner 9 television results.

Science.gov (United States)

Sagan, C.; Veverka, J.; Fox, P.; Dubisch, R.; Lederberg, J.; Levinthal, E.; Quam, L.; Tucker, R.; Pollack, J. B.; Smith, B. A.

1972-01-01

Systematic Mariner 9 photography of a range of Martian surface features, observed with all three photometric angles approximately invariant, reveals three general categories of albedo variations: (1) an essentially uniform contrast enhancement due to the dissipation of the dust storm; (2) the appearance of splotches, irregular dark markings at least partially related to topography; and (3) the development of both bright and dark linear streaks, generally emanating from craters. Some splotches and streaks vary on characteristic timescales of about two weeks; they have characteristic dimensions of kilometers to tens of kilometers. The morphology and variability of streaks and splotches, and the resolution of at least one splotch into an extensive dune system, implicate windblown dust as the principal agent of Martian albedo differences and variability.

Evaluación agronómica de accesiones de Capsicum del banco de germoplasma de la Universidad Nacional de Colombia Sede Palmira

Directory of Open Access Journals (Sweden)

García Dávila Mario Augusto

2009-03-01

Full Text Available En un diseño de bloques incompletos 10 x 10 con tres repeticiones se estudiaron descriptores cuantitativos relacionados con producción por planta, contenido de capsaicina y presencia de virus en 100 accesiones de Capsicum pertenecientes a la Universidad Nacional de Colombia. Las diferencias entre las accesiones fueron explicadas por el contenido de capsaicina, características asociadas con la producción por planta y características del fruto. Se encontró correlación inversa entre el contenido de capsaicina y producción; número de frutos por planta con peso de fruto. La dispersión de las accesiones en el plano cartesiano situó las variedades comerciales Cayenne, Tabasco y Habanero, en función de producción, peso y cantidad de frutos, en posiciones desventajosas con respecto a los promedios generales de las características de las otras accesiones. Cuatro accesiones superaron a Tabasco en contenido de capsaicina. Cuatro tipos de virus (potyvirus, geminivirus y cucumovirus y virus del mosaico del tabaco TMV se presentaron en el lote de evaluación. Los virus actuaron en forma conjunta; los potyvirus con los cucumovirus y TMV; los geminivirus con TMV.

Resistance to Plum pox virus strain C in Arabidopsis thaliana and Chenopodium foetidum involves genome-linked viral protein and other viral determinants and might depend on compatibility with host translation initiation factors.

Science.gov (United States)

Calvo, María; Martínez-Turiño, Sandra; García, Juan Antonio

2014-11-01

Research performed on model herbaceous hosts has been useful to unravel the molecular mechanisms that control viral infections. The most common Plum pox virus (PPV) strains are able to infect Nicotiana species as well as Chenopodium and Arabidopsis species. However, isolates belonging to strain C (PPV-C) that have been adapted to Nicotiana spp. are not infectious either in Chenopodium foetidum or in Arabidopsis thaliana. In order to determine the mechanism underlying this interesting host-specific behavior, we have constructed chimerical clones derived from Nicotiana-adapted PPV isolates from the D and C strains, which differ in their capacity to infect A. thaliana and C. foetidum. With this approach, we have identified the nuclear inclusion a protein (VPg+Pro) as the major pathogenicity determinant that conditions resistance in the presence of additional secondary determinants, different for each host. Genome-linked viral protein (VPg) mutations similar to those involved in the breakdown of eIF4E-mediated resistance to other potyviruses allow some PPV chimeras to infect A. thaliana. These results point to defective interactions between a translation initiation factor and the viral VPg as the most probable cause of host-specific incompatibility, in which other viral factors also participate, and suggest that complex interactions between multiple viral proteins and translation initiation factors not only define resistance to potyviruses in particular varieties of susceptible hosts but also contribute to establish nonhost resistance.

Biological characterization and complete nucleotide sequence of a Tunisian isolate of Moroccan watermelon mosaic virus.

Science.gov (United States)

Yakoubi, S; Desbiez, C; Fakhfakh, H; Wipf-Scheibel, C; Marrakchi, M; Lecoq, H

2008-01-01

During a survey conducted in October 2005, cucurbit leaf samples showing virus-like symptoms were collected from the major cucurbit-growing areas in Tunisia. DAS-ELISA showed the presence of Moroccan watermelon mosaic virus (MWMV, Potyvirus), detected for the first time in Tunisia, in samples from the region of Cap Bon (Northern Tunisia). MWMV isolate TN05-76 (MWMV-Tn) was characterized biologically and its full-length genome sequence was established. MWMV-Tn was found to have biological properties similar to those reported for the MWMV type strain from Morocco. Phylogenetic analysis including the comparison of complete amino-acid sequences of 42 potyviruses confirmed that MWMV-Tn is related (65% amino-acid sequence identity) to Papaya ringspot virus (PRSV) isolates but is a member of a distinct virus species. Sequence analysis on parts of the CP gene of MWMV isolates from different geographical origins revealed some geographic structure of MWMV variability, with three different clusters: one cluster including isolates from the Mediterranean region, a second including isolates from western and central Africa, and a third one including isolates from the southern part of Africa. A significant correlation was observed between geographic and genetic distances between isolates. Isolates from countries in the Mediterranean region where MWMV has recently emerged (France, Spain, Portugal) have highly conserved sequences, suggesting that they may have a common and recent origin. MWMV from Sudan, a highly divergent variant, may be considered an evolutionary intermediate between MWMV and PRSV.

Improvements in streaking nuclear reactors

International Nuclear Information System (INIS)

Pedrick, A.P.

1976-01-01

In this type of reactor atomic nuclei are stripped of their electron shells by heating to form a very high temperature plasma which is passed at high speed through a chamber in which they are forced into contact with a 'wall' formed by a unidirectional stream of photons from continuous laser beams. In this way it should be possible to brush off from the surface of the nuclei protons and neutrons, with release of their binding energy. The energy thus produced can be subjected to much more gentle control than with a fission or fusion reactor. Furthermore, if this concept can be successfully applied to elements of high atomic number which are normally regarded as stable and unfissionable, a vast new source of nuclear energy release will have been made available. It also seems possible that an atomic nucleus might be spun sufficiently in such a reactor to disintegrate it completely into nucleons by simple centrifugal action, with great release of binding energy. The reactor described has a central body with radial ducts through which the nuclei are passed, and a number of lasers are provided whose beams are arranged so that the nuclei are discharged at the cross-over point of two or more laser beams which form a corner at the junction of two or more photon walls. (U.K.)

A Virtual Environment for Resilient Infrastructure Modeling and Design

Science.gov (United States)

2015-09-01

Security CI Critical Infrastructure CID Center for Infrastructure Defense CSV Comma Separated Value DAD Defender-Attacker-Defender DHS Department...responses to disruptive events (e.g., cascading failure behavior) in a context- rich , controlled environment for exercises, education, and training...The general attacker-defender (AD) and defender-attacker-defender ( DAD ) models for CI are defined in Brown et al. (2006). These models help

Vector para la coexpresión de varias proteínas heterólogas en cantidades equimolares

OpenAIRE

Daròs Arnau, José Antonio; Bedoya, Leonor; Martínez, Fernando

2010-01-01

[ES] La invención se refiere a un vector de expresión basado en la secuencia nucleotídica del genoma de un Potyvirus, preferiblemente del virus del grabado del tabaco, que alberga una secuencia nucleotídica que codifica para al menos una proteína heteróloga, preferiblemente para dos y más preferiblemente para tres proteínas heterologas. Las proteínas heterologas se expresan, en la célula transfectada con este vector, como parte de la poliproteína viral y se encuentran flanqueadas por...

Attosecond delay in the molecular photoionization of asymmetric molecules.

Science.gov (United States)

Chacón, Alexis; Ruiz, Camilo

2018-02-19

We report theoretical calculations of the delay in photoemission from CO with particular emphasis on the role of the ultrafast electronic bound dynamics. We study the delays in photoionization in the HOMO and HOMO-1 orbitals of the CO molecule by looking into the stereo Wigner time delay technique. That compares the delay in photoemission from electrons emitted to the left and right to extract structural and dynamical information of the ionization process. For this we apply two techniques: The attosecond streak camera and the time of flight technique. Although they should provide the same results we have found large discrepancies of up to 36 in the case of HOMO, while for the HOMO-1 we obtain the same results with the two techniques. We have found that the large time delays observed in the HOMO orbital with the streaking technique are a consequence of the resonant transition triggered by the streaking field. This resonant transition produces a bound electron wavepacket that modifies the measurements of delay in photoionization. As a result of this observation, our technique allows us to reconstruct the bound wavepacket dynamics induced by the streaking field. By measuring the expected value of the electron momentum along the polarization direction after the streaking field has finished, we can recover the relative phase between the complex amplitudes of the HOMO and LUMO orbitals. These theoretical calculations pave the way for the measurement of ultrafast bound-bound electron transitionsand its crucial role for the delay in photoemission observation.

Biochemical study on changes of artery with age

International Nuclear Information System (INIS)

Ito, Takanori

1979-01-01

The study was made in order to elucidate the aging phenomenon by focussing on the structural changes of elastin in aorta. Human thoracic aorta was separated in to three layers (intima, media and externa), and further intima was divided to three parts (normal, plaque and fatty streak part). Those parts were quantitatively determined on chemical substances, such as elastin, triglyceride, cholesterol, calcium and phosphorus. While experimental arteriosclerosis was made on rats with the load of cholesterol, and aorta of experimental rats were labeled with 45 CaCl 2 . Finally Ca ++ binding site on elastin was examined by, separating 45 Ca binding elastin from 45 Ca labeled aorta. Following results were obtained: 1) The elastin contents of human thoracic aorta decreased with age, especially in intima and fatty streak. 2) The cholesterol, calcium and phosphorus contents increased with age in, all layers of human thoracic aorta and remarkable decreases of them were observed in plaque and in fatty streak. 3) The elastin of fatty streak in human thoracic aorta was rich in aspartic acid, glutamic acid, serine and hydroxyproline compared with amino acid contents of that of normal part. 4) The 45 Ca binding peptide was separated from 45 Ca binding elastin extracted from experimentally induced arteriosclerosis by thin layer chromatography and it was characteristic peptide containing aspartic acid, glutamic acid, threonine, serine, glycine and alanine. This characteristic amino acid contents was in good agreement with increased amino acid contents in the elastin from fatty streak of human thoracic aorta. (author)

Transitional–turbulent spots and turbulent–turbulent spots in boundary layers

Science.gov (United States)

Wu, Xiaohua; Moin, Parviz; Wallace, James M.; Skarda, Jinhie; Lozano-Durán, Adrián; Hickey, Jean-Pierre

2017-01-01

Two observations drawn from a thoroughly validated direct numerical simulation of the canonical spatially developing, zero-pressure gradient, smooth, flat-plate boundary layer are presented here. The first is that, for bypass transition in the narrow sense defined herein, we found that the transitional–turbulent spot inception mechanism is analogous to the secondary instability of boundary-layer natural transition, namely a spanwise vortex filament becomes a Λ vortex and then, a hairpin packet. Long streak meandering does occur but usually when a streak is infected by a nearby existing transitional–turbulent spot. Streak waviness and breakdown are, therefore, not the mechanisms for the inception of transitional–turbulent spots found here. Rather, they only facilitate the growth and spreading of existing transitional–turbulent spots. The second observation is the discovery, in the inner layer of the developed turbulent boundary layer, of what we call turbulent–turbulent spots. These turbulent–turbulent spots are dense concentrations of small-scale vortices with high swirling strength originating from hairpin packets. Although structurally quite similar to the transitional–turbulent spots, these turbulent–turbulent spots are generated locally in the fully turbulent environment, and they are persistent with a systematic variation of detection threshold level. They exert indentation, segmentation, and termination on the viscous sublayer streaks, and they coincide with local concentrations of high levels of Reynolds shear stress, enstrophy, and temperature fluctuations. The sublayer streaks seem to be passive and are often simply the rims of the indentation pockets arising from the turbulent–turbulent spots. PMID:28630304

Transitional-turbulent spots and turbulent-turbulent spots in boundary layers.

Science.gov (United States)

Wu, Xiaohua; Moin, Parviz; Wallace, James M; Skarda, Jinhie; Lozano-Durán, Adrián; Hickey, Jean-Pierre

2017-07-03

Two observations drawn from a thoroughly validated direct numerical simulation of the canonical spatially developing, zero-pressure gradient, smooth, flat-plate boundary layer are presented here. The first is that, for bypass transition in the narrow sense defined herein, we found that the transitional-turbulent spot inception mechanism is analogous to the secondary instability of boundary-layer natural transition, namely a spanwise vortex filament becomes a [Formula: see text] vortex and then, a hairpin packet. Long streak meandering does occur but usually when a streak is infected by a nearby existing transitional-turbulent spot. Streak waviness and breakdown are, therefore, not the mechanisms for the inception of transitional-turbulent spots found here. Rather, they only facilitate the growth and spreading of existing transitional-turbulent spots. The second observation is the discovery, in the inner layer of the developed turbulent boundary layer, of what we call turbulent-turbulent spots. These turbulent-turbulent spots are dense concentrations of small-scale vortices with high swirling strength originating from hairpin packets. Although structurally quite similar to the transitional-turbulent spots, these turbulent-turbulent spots are generated locally in the fully turbulent environment, and they are persistent with a systematic variation of detection threshold level. They exert indentation, segmentation, and termination on the viscous sublayer streaks, and they coincide with local concentrations of high levels of Reynolds shear stress, enstrophy, and temperature fluctuations. The sublayer streaks seem to be passive and are often simply the rims of the indentation pockets arising from the turbulent-turbulent spots.

The multifocal electroretinogram (mfERG) in the pig

DEFF Research Database (Denmark)

Voss Kyhn, Maria; Kiilgaard, Jens Folke; Lopez, Ana Garcia

2007-01-01

To establish a method allowing multifocal electroretinography (mfERG) recording with simultaneous fundus monitoring on anaesthetized pigs. In addition we characterize the peaks of the porcine mfERG trace, and compare the visual streak area with the optic nerve head, a known non-response area....... Finally we illustrate the feasibility of the method by performing mfERG after an induced laser burn in the visual streak....

High speed photography, videography, and photonics V; Proceedings of the Meeting, San Diego, CA, Aug. 17-19, 1987

International Nuclear Information System (INIS)

Johnson, H.C.

1988-01-01

Recent advances in high-speed optical and electrooptic devices are discussed in reviews and reports. Topics examined include data quantification and related technologies, high-speed photographic applications and instruments, flash and cine radiography, and novel ultrafast methods. Also considered are optical streak technology, high-speed videographic and photographic equipment, and X-ray streak cameras. Extensive diagrams, drawings, graphs, sample images, and tables of numerical data are provided

High resolution time- and 2-dimensional space-resolved x-ray imaging of plasmas at NOVA

International Nuclear Information System (INIS)

Landen, O.L.

1992-01-01

A streaked multiple pinhole camera technique, first used by P. Choi et al. to record time- and 2-D space-resolved soft X-ray images of plasma pinches, has been implemented on laser plasmas at NOVA. The instrument is particularly useful for time-resolved imaging of small sources ( 2.5 key imaging, complementing the existing 1--3 key streaked X-ray microscope capabilities at NOVA

High speed photography, videography, and photonics V; Proceedings of the Meeting, San Diego, CA, Aug. 17-19, 1987

Science.gov (United States)

Johnson, Howard C. (Editor)

1988-01-01

Recent advances in high-speed optical and electrooptic devices are discussed in reviews and reports. Topics examined include data quantification and related technologies, high-speed photographic applications and instruments, flash and cine radiography, and novel ultrafast methods. Also considered are optical streak technology, high-speed videographic and photographic equipment, and X-ray streak cameras. Extensive diagrams, drawings, graphs, sample images, and tables of numerical data are provided.