Spatial variation in carrier dynamics along a single CdSSe nanowire

International Nuclear Information System (INIS)

Blake, Jolie C.; Eldridge, Peter S.; Gundlach, Lars

2014-01-01

Highlights: • Femtosecond Kerr-gate microscopy allows ultrafast fluorescence measurements along different positions of a single nanowire. • Amplified spontaneous emission observed at high fluences can be used to calculate recombination rates. • Observation of ASE at different locations along a single CdSSe nanowire provides the ability to extract defect densities. - Abstract: Ultrafast charge carrier dynamics along individual CdS x Se 1−x nanowires has been measured. The use of an improved ultrafast Kerr-gated microscope allows for spatially resolved luminescence measurements along a single nanowire. Amplified spontaneous emission (ASE) was observed at high excitation fluences. Position dependent variations of ultrafast ASE dynamics were observed. SEM and colorimetric measurements showed that the difference in dynamics can be attributed to variations in non-radiative recombination rates along the wire. The dominant Shockley-Read recombination rate can be extracted from ASE dynamics and can be directly related to charge carrier mobility and defect density. Employing ASE as a probe for defect densities provides a new sub-micron spatially resolved, contactless method for measurements of charge carrier mobility

Multi-symplectic variational integrators for nonlinear Schrödinger equations with variable coefficients

International Nuclear Information System (INIS)

Liao Cui-Cui; Cui Jin-Chao; Liang Jiu-Zhen; Ding Xiao-Hua

2016-01-01

In this paper, we propose a variational integrator for nonlinear Schrödinger equations with variable coefficients. It is shown that our variational integrator is naturally multi-symplectic. The discrete multi-symplectic structure of the integrator is presented by a multi-symplectic form formula that can be derived from the discrete Lagrangian boundary function. As two examples of nonlinear Schrödinger equations with variable coefficients, cubic nonlinear Schrödinger equations and Gross–Pitaevskii equations are extensively studied by the proposed integrator. Our numerical simulations demonstrate that the integrator is capable of preserving the mass, momentum, and energy conservation during time evolutions. Convergence tests are presented to verify that our integrator has second-order accuracy both in time and space. (paper)

On Ostrowski Type Inequalities for Functions of Two Variables with Bounded Variation

Directory of Open Access Journals (Sweden)

Hüseyin Budak

2016-10-01

Full Text Available In this paper, we establish a new generalization of Ostrowski type inequalities for functions of two independent variables with bounded variation and apply it for qubature formulae. Some connections with the rectangle, the midpoint and Simpson's rule are also given.

Variable dose rate single-arc IMAT delivered with a constant dose rate and variable angular spacing

International Nuclear Information System (INIS)

Tang, Grace; Earl, Matthew A; Yu, Cedric X

2009-01-01

Single-arc intensity-modulated arc therapy (IMAT) has gained worldwide interest in both research and clinical implementation due to its superior plan quality and delivery efficiency. Single-arc IMAT techniques such as the Varian RapidArc(TM) deliver conformal dose distributions to the target in one single gantry rotation, resulting in a delivery time in the order of 2 min. The segments in these techniques are evenly distributed within an arc and are allowed to have different monitor unit (MU) weightings. Therefore, a variable dose-rate (VDR) is required for delivery. Because the VDR requirement complicates the control hardware and software of the linear accelerators (linacs) and prevents most existing linacs from delivering IMAT, we propose an alternative planning approach for IMAT using constant dose-rate (CDR) delivery with variable angular spacing. We prove the equivalence by converting VDR-optimized RapidArc plans to CDR plans, where the evenly spaced beams in the VDR plan are redistributed to uneven spacing such that the segments with larger MU weighting occupy a greater angular interval. To minimize perturbation in the optimized dose distribution, the angular deviation of the segments was restricted to ≤± 5 deg. This restriction requires the treatment arc to be broken into multiple sectors such that the local MU fluctuation within each sector is reduced, thereby lowering the angular deviation of the segments during redistribution. The converted CDR plans were delivered with a single gantry sweep as in the VDR plans but each sector was delivered with a different value of CDR. For four patient cases, including two head-and-neck, one brain and one prostate, all CDR plans developed with the variable spacing scheme produced similar dose distributions to the original VDR plans. For plans with complex angular MU distributions, the number of sectors increased up to four in the CDR plans in order to maintain the original plan quality. Since each sector was

Short- and long-term variations in non-linear dynamics of heart rate variability

DEFF Research Database (Denmark)

Kanters, J K; Højgaard, M V; Agner, E

1996-01-01

OBJECTIVES: The purpose of the study was to investigate the short- and long-term variations in the non-linear dynamics of heart rate variability, and to determine the relationships between conventional time and frequency domain methods and the newer non-linear methods of characterizing heart rate...... rate and describes mainly linear correlations. Non-linear predictability is correlated with heart rate variability measured as the standard deviation of the R-R intervals and the respiratory activity expressed as power of the high-frequency band. The dynamics of heart rate variability changes suddenly...

Seasonal variation of the single scattering albedo of the Jungfraujoch aerosol

Energy Technology Data Exchange (ETDEWEB)

Collaud Coen, M.; Weingartner, E.; Corrigan, C.; Baltensperger, U.

2003-03-01

The single scattering albedo ({omega}{sub 0}) represents the fraction of the light extinction due to scattering. It is there-fore a key parameter to estimate the aerosol direct radiative forcing. The seasonal and diurnal variation of the single scattering albedo was calculated for the Jungfraujoch dry aerosol, which is representative for clean remote continental conditions. The values of {omega}{sub 0} vary between 0.7 and 0.9 depending on the season and on the wavelength. (author)

Climate variables explain neutral and adaptive variation within salmonid metapopulations: The importance of replication in landscape genetics

Science.gov (United States)

Hand, Brian K.; Muhlfeld, Clint C.; Wade, Alisa A.; Kovach, Ryan; Whited, Diane C.; Narum, Shawn R.; Matala, Andrew P.; Ackerman, Michael W.; Garner, B. A.; Kimball, John S; Stanford, Jack A.; Luikart, Gordon

2016-01-01

Understanding how environmental variation influences population genetic structure is important for conservation management because it can reveal how human stressors influence population connectivity, genetic diversity and persistence. We used riverscape genetics modelling to assess whether climatic and habitat variables were related to neutral and adaptive patterns of genetic differentiation (population-specific and pairwise FST) within five metapopulations (79 populations, 4583 individuals) of steelhead trout (Oncorhynchus mykiss) in the Columbia River Basin, USA. Using 151 putatively neutral and 29 candidate adaptive SNP loci, we found that climate-related variables (winter precipitation, summer maximum temperature, winter highest 5% flow events and summer mean flow) best explained neutral and adaptive patterns of genetic differentiation within metapopulations, suggesting that climatic variation likely influences both demography (neutral variation) and local adaptation (adaptive variation). However, we did not observe consistent relationships between climate variables and FST across all metapopulations, underscoring the need for replication when extrapolating results from one scale to another (e.g. basin-wide to the metapopulation scale). Sensitivity analysis (leave-one-population-out) revealed consistent relationships between climate variables and FST within three metapopulations; however, these patterns were not consistent in two metapopulations likely due to small sample sizes (N = 10). These results provide correlative evidence that climatic variation has shaped the genetic structure of steelhead populations and highlight the need for replication and sensitivity analyses in land and riverscape genetics.

Production of a phage-displayed single chain variable fragment ...

African Journals Online (AJOL)

Purpose: To develop specific single chain variable fragments (scFv) against infectious bursal disease virus (IBDV) via phage display technology. Methods: Purified viruses were initially applied for iterative panning rounds of scFv phage display libraries. The binding ability of the selected scFv antibody fragments against the ...

Between-cow variation in digestion and rumen fermentation variables associated with methane production.

Science.gov (United States)

Cabezas-Garcia, E H; Krizsan, S J; Shingfield, K J; Huhtanen, P

2017-06-01

A meta-analysis based on an individual-cow data set was conducted to investigate the effects of between-cow variation and related animal variables on predicted CH 4 emissions from dairy cows. Data were taken from 40 change-over studies consisting of a total of 637 cow/period observations. Animal production and rumen fermentation characteristics were measured for 154 diets in 40 studies; diet digestibility was measured for 135 diets in 34 studies, and ruminal digestion kinetics was measured for 56 diets in 15 studies. The experimental diets were based on grass silage, with cereal grains or by-products as energy supplements, and soybean or canola meal as protein supplements. Average forage:concentrate ratio across all diets on a dry matter basis was 59:41. Methane production was predicted from apparently fermented substrate using stoichiometric principles. Data were analyzed by mixed-model regression using diet and period within experiment as random effects, thereby allowing the effect of experiment, diet, and period to be excluded. Dry matter intake and milk yield were more repeatable experimental measures than rumen fermentation, nutrient outflow, diet digestibility, or estimated CH 4 yield. Between-cow coefficient of variation (CV) was 0.010 for stoichiometric CH 4 per mol of volatile fatty acids and 0.067 for predicted CH 4 yield (CH 4 /dry matter intake). Organic matter digestibility (OMD) also displayed little between-cow variation (CV = 0.013), indicating that between-cow variation in diet digestibility and rumen fermentation pattern do not markedly contribute to between cow-variation in CH 4 yield. Digesta passage rate was much more variable (CV = 0.08) between cows than OMD or rumen fermentation pattern. Increased digesta passage rate is associated with improved energetic efficiency of microbial N synthesis, which partitions fermented substrate from volatile fatty acids and gases to microbial cells that are more reduced than fermented carbohydrates. Positive

Sources of variability for the single-comparator method in a heavy-water reactor

International Nuclear Information System (INIS)

Damsgaard, E.; Heydorn, K.

1978-11-01

The well thermalized flux in the heavy-water-moderated DR 3 reactor at Risoe prompted us to investigate to what extent a single comparator could be used for multi-element determination instead of multiple comparators. The reliability of the single-comparator method is limited by the thermal-to-epithermal ratio, and experiments were designed to determine the variations in this ratio throughout a reactor operating period (4 weeks including a shut-down period of 4-5 days). The bi-isotopic method using zirconium as monitor was chosen, because 94 Zr and 96 Zr exhibit a large difference in their Isub(o)/Σsub(th) values, and would permit determination of the flux ratio with a precision sufficient to determine variations. One of the irradiation facilities comprises a rotating magazine with 3 channels, each of which can hold five aluminium cans. In this rig, five cans, each holding a polyvial with 1 ml of aqueous zirconium solution were irradiated simultaneously in one channel. Irradiations were carried out in the first and the third week of 4 periods. In another facility consisting of a pneumatic tube system, two samples were simultaneously irradiated on top of each other in a polyethylene rabbit. Experiments were carried out once a week for 4 periods. All samples were counted on a Ge(Li)-detector for 95 Zr, 97 sup(m)Nb and 97 Nb. The thermal-to-epithermal flux ratio was calculated from the induced activity, the nuclear data for the two zirconium isotopes and the detector efficiency. By analysis of variance the total variation of the flux ratio was separated into a random variation between reactor periods, and systematic differences between the positions, as well as the weeks in the operating period. If the variations are in statistical control, the error resulting from use of the single-comparator method in multi-element determination can be estimated for any combination of irradiation position and day in the operating period. With the measure flux ratio variations in DR

Continuity in Λ-variation of functions of several variables and convergence of multiple Fourier series

International Nuclear Information System (INIS)

Bakhvalov, A N

2002-01-01

The behaviour of rectangular partial sums of the Fourier series of functions of several variables having bounded Λ-variation is considered. It is proved that if a continuous function is also continuous in harmonic variation, then its Fourier series uniformly converges in the sense of Pringsheim. On the other hand, it is demonstrated that in dimensions greater than 2 there always exists a continuous function of bounded harmonic variation with Fourier series divergent over cubes at the origin

Assessing the Impact of Socioeconomic Variables on Small Area Variations in Suicide Outcomes in England

Directory of Open Access Journals (Sweden)

Peter Congdon

2012-12-01

Full Text Available Ecological studies of suicide and self-harm have established the importance of area variables (e.g., deprivation, social fragmentation in explaining variations in suicide risk. However, there are likely to be unobserved influences on risk, typically spatially clustered, which can be modeled as random effects. Regression impacts may be biased if no account is taken of spatially structured influences on risk. Furthermore a default assumption of linear effects of area variables may also misstate or understate their impact. This paper considers variations in suicide outcomes for small areas across England, and investigates the impact on them of area socio-economic variables, while also investigating potential nonlinearity in their impact and allowing for spatially clustered unobserved factors. The outcomes are self-harm hospitalisations and suicide mortality over 6,781 Middle Level Super Output Areas.

Effects of temperature and other experimental variables on single molecule vibrational spectroscopy with the scanning tunneling microscope

International Nuclear Information System (INIS)

Lauhon, L. J.; Ho, W.

2001-01-01

Inelastic electron tunneling spectroscopy (IETS) was performed on single molecules with a variable temperature scanning tunneling microscope. The peak intensity, width, position, and line shape of single molecule vibrational spectra were studied as a function of temperature, modulation bias, bias polarity, and tip position for the (C--H,C--D) stretching vibration of acetylene (C 2 H 2 ,C 2 D 2 ) on Cu(001). The temperature broadening of vibrational peaks was found to be a consequence of Fermi smearing as in macroscopic IETS. The modulation broadening of vibrational peaks assumed the expected form for IETS. Extrapolation of the peak width to zero temperature and modulation suggested an intrinsic width of ∼4 meV due primarily to instrumental broadening. The inelastic tunneling cross section at negative bias was reduced by a factor of 1.7 for the C--H stretch mode. Low energy modes of other molecules did not show such a reduction. There was no evidence of a tip-induced Stark shift in the peak positions. The spatial variation of the inelastic signal was measured to determine the junction stability necessary for the acquisition of single molecule vibrational spectra

Coupled Effects of non-Newtonian Rheology and Aperture Variability on Flow in a Single Fracture

Science.gov (United States)

Di Federico, V.; Felisa, G.; Lauriola, I.; Longo, S.

2017-12-01

Modeling of non-Newtonian flow in fractured media is essential in hydraulic fracturing and drilling operations, EOR, environmental remediation, and to understand magma intrusions. An important step in the modeling effort is a detailed understanding of flow in a single fracture, as the fracture aperture is spatially variable. A large bibliography exists on Newtonian and non-Newtonian flow in variable aperture fractures. Ultimately, stochastic or deterministic modeling leads to the flowrate under a given pressure gradient as a function of the parameters describing the aperture variability and the fluid rheology. Typically, analytical or numerical studies are performed adopting a power-law (Oswald-de Waele) model. Yet the power-law model, routinely used e.g. for hydro-fracturing modeling, does not characterize real fluids at low and high shear rates. A more appropriate rheological model is provided by e.g. the four-parameter Carreau constitutive equation, which is in turn approximated by the more tractable truncated power-law model. Moreover, fluids of interest may exhibit yield stress, which requires the Bingham or Herschel-Bulkely model. This study employs different rheological models in the context of flow in variable aperture fractures, with the aim of understanding the coupled effect of rheology and aperture spatial variability with a simplified model. The aperture variation, modeled within a stochastic or deterministic framework, is taken to be one-dimensional and i) perpendicular; ii) parallel to the flow direction; for stochastic modeling, the influence of different distribution functions is examined. Results for the different rheological models are compared with those obtained for the pure power-law. The adoption of the latter model leads to overestimation of the flowrate, more so for large aperture variability. The presence of yield stress also induces significant changes in the resulting flowrate for assigned external pressure gradient.

Osmium isotope variations accompanying the eruption of a single lava flow field in the Columbia River Flood Basalt Province

Science.gov (United States)

Vye-Brown, C.; Gannoun, A.; Barry, T. L.; Self, S.; Burton, K. W.

2013-04-01

Geochemical interpretations of continental flood basalts usually assume that individual lava flows represent compositionally homogenous and rapidly erupted products of large well-mixed magma reservoirs. However, inflated pāhoehoe lavas may develop over considerable periods of time and preserve chemical variations that can be temporally linked through flow formation to eruption sequence thus providing an understanding of magma evolution over the timescale of a single eruption. This study presents comprehensive major, trace element and Re-Os isotope data for a single eruption that formed the 2660 km3 Sand Hollow flow field in the Columbia River Basalt Province, USA. Major and trace element variations accompanying flow emplacement (e.g. MgO 3.09-4.55 wt%, Ni 17.5-25.6 ppm) are consistent with fractional crystallisation, but other petrogenetic processes or variable sources cannot be distinguished. However, there is a systematic shift in the initial 187Os/188Os isotope composition of the magma (age corrected to 15.27 Ma), from 0.174 (lava core) to 1.444 (lava crust) within a single 35 m thick sheet lobe. Lava crust values are more radiogenic than any known mantle source, consistent with previous data indicating that neither an enriched reservoir nor the sub-continental lithospheric mantle are likely to have sourced these basalts. Rather, these data indicate that lavas emplaced during the earliest stages of eruption have higher degrees of crustal contamination. These results highlight the limitations of applying chemostratigraphic correlation across continental flood basalt provinces, the use of single data points to define melt sources and magmatic processes, and the dangers of using conventional isochron techniques in such basalt sequences for absolute chronology.

Line-edge roughness induced single event transient variation in SOI FinFETs

International Nuclear Information System (INIS)

Wu Weikang; An Xia; Jiang Xiaobo; Chen Yehua; Liu Jingjing; Zhang Xing; Huang Ru

2015-01-01

The impact of process induced variation on the response of SOI FinFET to heavy ion irradiation is studied through 3-D TCAD simulation for the first time. When FinFET biased at OFF state configuration (V gs = 0, V ds = V dd ) is struck by a heavy ion, the drain collects ionizing charges under the electric field and a current pulse (single event transient, SET) is consequently formed. The results reveal that with the presence of line-edge roughness (LER), which is one of the major variation sources in nano-scale FinFETs, the device-to-device variation in terms of SET is observed. In this study, three types of LER are considered: type A has symmetric fin edges, type B has irrelevant fin edges and type C has parallel fin edges. The results show that type A devices have the largest SET variation while type C devices have the smallest variation. Further, the impact of the two main LER parameters, correlation length and root mean square amplitude, on SET variation is discussed as well. The results indicate that variation may be a concern in radiation effects with the down scaling of feature size. (paper)

The gait standard deviation, a single measure of kinematic variability.

Science.gov (United States)

Sangeux, Morgan; Passmore, Elyse; Graham, H Kerr; Tirosh, Oren

2016-05-01

Measurement of gait kinematic variability provides relevant clinical information in certain conditions affecting the neuromotor control of movement. In this article, we present a measure of overall gait kinematic variability, GaitSD, based on combination of waveforms' standard deviation. The waveform standard deviation is the common numerator in established indices of variability such as Kadaba's coefficient of multiple correlation or Winter's waveform coefficient of variation. Gait data were collected on typically developing children aged 6-17 years. Large number of strides was captured for each child, average 45 (SD: 11) for kinematics and 19 (SD: 5) for kinetics. We used a bootstrap procedure to determine the precision of GaitSD as a function of the number of strides processed. We compared the within-subject, stride-to-stride, variability with the, between-subject, variability of the normative pattern. Finally, we investigated the correlation between age and gait kinematic, kinetic and spatio-temporal variability. In typically developing children, the relative precision of GaitSD was 10% as soon as 6 strides were captured. As a comparison, spatio-temporal parameters required 30 strides to reach the same relative precision. The ratio stride-to-stride divided by normative pattern variability was smaller in kinematic variables (the smallest for pelvic tilt, 28%) than in kinetic and spatio-temporal variables (the largest for normalised stride length, 95%). GaitSD had a strong, negative correlation with age. We show that gait consistency may stabilise only at, or after, skeletal maturity. Copyright © 2016 Elsevier B.V. All rights reserved.

Relationship between climatic variables and the variation in bulk tank milk composition using canonical correlation analysis.

Science.gov (United States)

Stürmer, Morgana; Busanello, Marcos; Velho, João Pedro; Heck, Vanessa Isabel; Haygert-Velho, Ione Maria Pereira

2018-06-04

A number of studies have addressed the relations between climatic variables and milk composition, but these works used univariate statistical approaches. In our study, we used a multivariate approach (canonical correlation) to study the impact of climatic variables on milk composition, price, and monthly milk production at a dairy farm using bulk tank milk data. Data on milk composition, price, and monthly milk production were obtained from a dairy company that purchased the milk from the farm, while climatic variable data were obtained from the National Institute of Meteorology (INMET). The data are from January 2014 to December 2016. Univariate correlation analysis and canonical correlation analysis were performed. Few correlations between the climatic variables and milk composition were found using a univariate approach. However, using canonical correlation analysis, we found a strong and significant correlation (r c  = 0.95, p value = 0.0029). Lactose, ambient temperature measures (mean, minimum, and maximum), and temperature-humidity index (THI) were found to be the most important variables for the canonical correlation. Our study indicated that 10.2% of the variation in milk composition, pricing, and monthly milk production can be explained by climatic variables. Ambient temperature variables, together with THI, seem to have the most influence on variation in milk composition.

Temporal and spatial variations in fly ash quality

Science.gov (United States)

Hower, J.C.; Trimble, A.S.; Eble, C.F.

2001-01-01

Fly ash quality, both as the amount of petrographically distinguishable carbons and in chemistry, varies in both time and space. Temporal variations are a function of a number of variables. Variables can include variations in the coal blend organic petrography, mineralogy, and chemistry; variations in the pulverization of the coal, both as a function of the coal's Hardgrove grindability index and as a function of the maintenance and settings of the pulverizers; and variations in the operating conditions of the boiler, including changes in the pollution control system. Spatial variation, as an instantaneous measure of fly ash characteristics, should not involve changes in the first two sets of variables listed above. Spatial variations are a function of the gas flow within the boiler and ducts, certain flow conditions leading to a tendency for segregation of the less-dense carbons in one portion of the gas stream. Caution must be applied in sampling fly ash. Samples from a single bin, or series of bins, m ay not be representative of the whole fly ash, providing a biased view of the nature of the material. Further, it is generally not possible to be certain about variation until the analysis of the ash is complete. ?? 2001 Elsevier Science B.V. All rights reserved.

Environmental and geographic variables are effective surrogates for genetic variation in conservation planning.

Science.gov (United States)

Hanson, Jeffrey O; Rhodes, Jonathan R; Riginos, Cynthia; Fuller, Richard A

2017-11-28

Protected areas buffer species from anthropogenic threats and provide places for the processes that generate and maintain biodiversity to continue. However, genetic variation, the raw material for evolution, is difficult to capture in conservation planning, not least because genetic data require considerable resources to obtain and analyze. Here we show that freely available environmental and geographic distance variables can be highly effective surrogates in conservation planning for representing adaptive and neutral intraspecific genetic variation. We obtained occurrence and genetic data from the IntraBioDiv project for 27 plant species collected over the European Alps using a gridded sampling scheme. For each species, we identified loci that were potentially under selection using outlier loci methods, and mapped their main gradients of adaptive and neutral genetic variation across the grid cells. We then used the cells as planning units to prioritize protected area acquisitions. First, we verified that the spatial patterns of environmental and geographic variation were correlated, respectively, with adaptive and neutral genetic variation. Second, we showed that these surrogates can predict the proportion of genetic variation secured in randomly generated solutions. Finally, we discovered that solutions based only on surrogate information secured substantial amounts of adaptive and neutral genetic variation. Our work paves the way for widespread integration of surrogates for genetic variation into conservation planning.

Optimized variational analysis scheme of single Doppler radar wind data

Science.gov (United States)

Sasaki, Yoshi K.; Allen, Steve; Mizuno, Koki; Whitehead, Victor; Wilk, Kenneth E.

1989-01-01

A computer scheme for extracting singularities has been developed and applied to single Doppler radar wind data. The scheme is planned for use in real-time wind and singularity analysis and forecasting. The method, known as Doppler Operational Variational Extraction of Singularities is outlined, focusing on the principle of local symmetry. Results are presented from the application of the scheme to a storm-generated gust front in Oklahoma on May 28, 1987.

Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

DEFF Research Database (Denmark)

Hou, Yong; Wu, Kui; Shi, Xulian

2015-01-01

methods, focusing particularly on variations detection. Low-coverage whole-genome sequencing revealed that DOP-PCR had the highest duplication ratio, but an even read distribution and the best reproducibility and accuracy for detection of copy-number variations (CNVs). However, MDA had significantly...... performance using SCRS amplified by different WGA methods. It will guide researchers to determine which WGA method is best suited to individual experimental needs at single-cell level....

Variation in cooperative behaviour within a single city.

Directory of Open Access Journals (Sweden)

Daniel Nettle

Full Text Available Human cooperative behaviour, as assayed by decisions in experimental economic dilemmas such as the Dictator Game, is variable across human populations. Within-population variation has been less well studied, especially within industrial societies. Moreover, little is known about the extent to which community-level variation in Dictator Game behaviour relates to community-level variation in real-world social behaviour. We chose two neighbourhoods of the city of Newcastle upon Tyne that were similar in most regards, but at opposite ends of the spectrum in terms of level of socioeconomic deprivation. We administered Dictator Games to randomly-selected residents, and also gathered a large number of more naturalistic measures of cooperativeness. There were dramatic differences in Dictator Game behaviour between the two neighbourhoods, with the mean allocation to the other player close to half the stake in the affluent neighbourhood, and close to one tenth of the stake in the deprived neighbourhood. Moreover, the deprived neighbourhood was also characterised by lower self-reported social capital, higher frequencies of crime and antisocial behaviour, a higher frequency of littering, and less willingness to take part in a survey or return a lost letter. On the other hand, there were no differences between the neighbourhoods in terms of the probability of helping a person who dropped an object, needed directions to a hospital, or needed to make change for a coin, and people on the streets were less likely to be alone in the deprived neighbourhood than the affluent one. We conclude that there can be dramatic local differences in cooperative behaviour within the same city, and that these need further theoretical explanation.

Relationships between pediatric asthma and socioeconomic/urban variables in Baltimore, Maryland

Science.gov (United States)

Kimes, Daniel; Ullah, Asad; Levine, Elissa; Nelson, Ross; Timmins, Sidey; Weiss, Sheila; Bollinger, Mary E.; Blaisdell, Carol

2004-01-01

Spatial relationships between clinical data for pediatric asthmatics (hospital and emergency department utilization rates), and socioeconomic and urban characteristics in Baltimore City were analyzed with the aim of identifying factors that contribute to increased asthma rates. Socioeconomic variables and urban characteristics derived from satellite data explained 95% of the spatial variation in hospital rates. The proportion of families headed by a single female was the most important variable accounting for 89% of the spatial variation. Evidence suggests that the high rates of hospital admissions and emergency department (ED) visits may partially be due to the difficulty of single parents with limited resources managing their child's asthma condition properly. This knowledge can be used for education towards mitigating ED and hospital events in Baltimore City.

NOT ALL SINGLE LEG SQUATS ARE EQUAL: A BIOMECHANICAL COMPARISON OF THREE VARIATIONS.

Science.gov (United States)

Khuu, Anne; Foch, Eric; Lewis, Cara L

2016-04-01

The single leg squat (SLS) is a functional task used by practitioners to evaluate and treat multiple pathologies of the lower extremity. Variations of the SLS may have different neuromuscular and biomechanical demands. The effect of altering the non-stance leg position during the SLS on trunk, pelvic, and lower extremity mechanics has not been reported. The purpose of this study was to compare trunk, pelvic, hip, knee, and ankle kinematics and hip, knee, and ankle kinetics of three variations of the SLS using different non-stance leg positions: SLS-Front, SLS-Middle, and SLS-Back. Sixteen healthy women performed the three SLS tasks while data were collected using a motion capture system and force plates. Joint mechanics in the sagittal, frontal, and transverse planes were compared for the SLS tasks using a separate repeated-measures analysis of variance (ANOVA) for each variable at two analysis points: peak knee flexion (PKF) and 60 ° of knee flexion (60KF). Different non-stance leg positions during the SLS resulted in distinct movement patterns and moments at the trunk, pelvis, and lower extremity. At PKF, SLS-Back exhibited the greatest kinematic differences (p < 0.05) from SLS-Front and SLS-Middle with greater ipsilateral trunk flexion, pelvic anterior tilt and drop, hip flexion and adduction, and external rotation as well as less knee flexion and abduction. SLS-Back also showed the greatest kinetic differences (p < 0.05) from SLS-Front and SLS-Middle with greater hip external rotator moment and knee extensor moment as well as less hip extensor moment and knee adductor moment at PKF. At 60KF, the findings were similar except at the knee. The mechanics of the trunk, pelvis, and lower extremity during the SLS were affected by the position of the non-stance leg in healthy females. Practitioners can use these findings to distinguish between SLS variations and to select the appropriate SLS for assessment and rehabilitation. 3.

The impact of pre-analytical variables on the stability of neurofilament proteins in CSF, determined by a novel validated SinglePlex Luminex assay and ELISA.

Science.gov (United States)

Koel-Simmelink, Marleen J A; Vennegoor, Anke; Killestein, Joep; Blankenstein, Marinus A; Norgren, Niklas; Korth, Carsten; Teunissen, Charlotte E

2014-01-15

Neurofilament (Nf) proteins have been shown to be promising biomarkers for monitoring and predicting disease progression for various neurological diseases. The aim of this study was to evaluate the effects of pre-analytical variables on the concentration of neurofilament heavy (NfH) and neurofilament light (NfL) proteins. For NfH an in-house newly-developed and validated SinglePlex Luminex assay was used; ELISA was used to analyze NfL. For the NfL ELISA assay, the intra- and inter-assay variation was respectively, 1.5% and 16.7%. Analytical performance of the NfH SinglePlex Luminex assay in terms of sensitivity (6.6pg/mL), recovery in cerebrospinal fluid (CSF) (between 90 and 104%), linearity (from 6.6-1250pg/mL), and inter- and intra-assay variation (<8%) were good. Concentrations of both NfL and NfH appeared not negatively affected by blood contamination, repeated freeze-thaw cycles (up to 4), delayed processing (up to 24hours) and during long-term storage at -20°C, 4°C, and room temperature. A decrease in concentration was observed during storage of both neurofilament proteins up to 21days at 37°C, which was significant by day 5. The newly developed NfH SinglePlex Luminex assay has a good sensitivity and is robust. Moreover, both NfH and NfL are stable under the most prevalent pre-analytical variations. Copyright © 2013 Elsevier B.V. All rights reserved.

Excitation of Earth Rotation Variations "Observed" by Time-Variable Gravity

Science.gov (United States)

Chao, Ben F.; Cox, C. M.

2005-01-01

Time variable gravity measurements have been made over the past two decades using the space geodetic technique of satellite laser ranging, and more recently by the GRACE satellite mission with improved spatial resolutions. The degree-2 harmonic components of the time-variable gravity contain important information about the Earth s length-of-day and polar motion excitation functions, in a way independent to the traditional "direct" Earth rotation measurements made by, for example, the very-long-baseline interferometry and GPS. In particular, the (degree=2, order= 1) components give the mass term of the polar motion excitation; the (2,O) component, under certain mass conservation conditions, gives the mass term of the length-of-day excitation. Combining these with yet another independent source of angular momentum estimation calculated from global geophysical fluid models (for example the atmospheric angular momentum, in both mass and motion terms), in principle can lead to new insights into the dynamics, particularly the role or the lack thereof of the cores, in the excitation processes of the Earth rotation variations.

Intrinsic variations of the double quasar 0957 + 56 AB

International Nuclear Information System (INIS)

Lloyd, C.

1981-01-01

Observations of the two components of the quasar 0957 + 56A and B are reported which show a variation of approximately 1 mag in both components and behaviour typical of intrinsically variable quasars with similar radio structure. It is argued that the near constancy of the magnitude difference between the components at several epochs, despite overall variations, favours all the variations being intrinsic to the quasar and also supports the hypothesis that the two images are produced by the gravitational lensing of a single distant quasar. (U.K.)

Hospital Variation in Cesarean Delivery: A Multilevel Analysis.

Science.gov (United States)

Vecino-Ortiz, Andres I; Bardey, David; Castano-Yepes, Ramon

2015-12-01

To assess the issue of hospital variations in Colombia and to contribute to the methodology on health care variations by using a model that clusters the variance between hospitals while accounting for individual-level reimbursement rates and objective health-status variables. We used data on all births (N = 11,954) taking place in a contributory-regimen insurer network in Colombia during 2007. A multilevel logistic regression model was used to account for the share of unexplained variance between hospitals. In addition, an alternative variance decomposition specification was further carried out to measure the proportion of such unexplained variance due to the region effect. Hospitals account for 20% of the variation in performing cesarean sections, whereas region explains only one-third of such variance. Variables accounting for preferences on the demand side as well as reimbursement rates are found to predict the probability of performing cesarean sections. Hospital variations explain large variances within a single-payer's network. Because this insurer company is highly regarded in terms of performance and finance, these results might provide a lower bound for the scale of hospital variation in the Colombian health care market. Such lower bound provides guidance on the relevance of this issue for Colombia. Some factors such as demand-side preferences and physician reimbursement rates increase variations in health care even within a single-payer network. This is a source of inefficiencies, threatening the quality of health care and financial sustainability. The proposed methodology should be considered in further research on health care variations. Copyright © 2015 International Society for Pharmacoeconomics and Outcomes Research (ISPOR). Published by Elsevier Inc. All rights reserved.

Enumeration of Combinatorial Classes of Single Variable Complex Polynomial Vector Fields

DEFF Research Database (Denmark)

Dias, Kealey

A vector field in the space of degree d monic, centered single variable complex polynomial vector fields has a combinatorial structure which can be fully described by a combinatorial data set consisting of an equivalence relation and a marked subset on the integers mod 2d-2, satisfying certain...

Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing

Directory of Open Access Journals (Sweden)

Zhang Xinmin

2011-05-01

Full Text Available Abstract Background In highly copy number variable (CNV regions such as the human defensin gene locus, comprehensive assessment of sequence variations is challenging. PCR approaches are practically restricted to tiny fractions, and next-generation sequencing (NGS approaches of whole individual genomes e.g. by the 1000 Genomes Project is confined by an affordable sequence depth. Combining target enrichment with NGS may represent a feasible approach. Results As a proof of principle, we enriched a ~850 kb section comprising the CNV defensin gene cluster DEFB, the invariable DEFA part and 11 control regions from two genomes by sequence capture and sequenced it by 454 technology. 6,651 differences to the human reference genome were found. Comparison to HapMap genotypes revealed sensitivities and specificities in the range of 94% to 99% for the identification of variations. Using error probabilities for rigorous filtering revealed 2,886 unique single nucleotide variations (SNVs including 358 putative novel ones. DEFB CN determinations by haplotype ratios were in agreement with alternative methods. Conclusion Although currently labor extensive and having high costs, target enriched NGS provides a powerful tool for the comprehensive assessment of SNVs in highly polymorphic CNV regions of individual genomes. Furthermore, it reveals considerable amounts of putative novel variations and simultaneously allows CN estimation.

Variability, heritability, character association, path analysis and morphological diversity in snake gourd

Directory of Open Access Journals (Sweden)

A.S.M. Mahbubur Rahman Khan

2016-11-01

Full Text Available Genetic variability, heritability and path coefficient analysis were studied in 21 genotypes of snake gourd. The phenotypic coefficient of variations was found slightly higher than the genotypic coefficient of variations for all characters studied, indicating that the apparent variation is not only genetic but also influenced by the growing environment in the expression of the traits. The genotypic coefficient of variation was high for the fruit yield, number of fruits per vine, length of fruit and single fruit weight. High heritability coupled with high-to-moderate genetic advance was estimated for all characters studied. Correlation studies revealed that the fruit yield had a significant, positive correlation with the number of fruits per vine, length of fruit and single fruit weight. Importantly, more than 90% of the genotypic total variation was contributed by the characters included in the path analysis. The highest, direct, positive effect was recorded for the number of fruits per vine. The divergence value for cluster analysis indicated that the genotypes from clusters II and III had the highest inter-cluster distance and were expected to provide high heterosis in hybridization and to show wide variability in genetic architecture. The selection of high yielding genotypes should give emphasis to the number of fruits per vine, length of fruit and single fruit weight.

Multi-region and single-cell sequencing reveal variable genomic heterogeneity in rectal cancer.

Science.gov (United States)

Liu, Mingshan; Liu, Yang; Di, Jiabo; Su, Zhe; Yang, Hong; Jiang, Beihai; Wang, Zaozao; Zhuang, Meng; Bai, Fan; Su, Xiangqian

2017-11-23

Colorectal cancer is a heterogeneous group of malignancies with complex molecular subtypes. While colon cancer has been widely investigated, studies on rectal cancer are very limited. Here, we performed multi-region whole-exome sequencing and single-cell whole-genome sequencing to examine the genomic intratumor heterogeneity (ITH) of rectal tumors. We sequenced nine tumor regions and 88 single cells from two rectal cancer patients with tumors of the same molecular classification and characterized their mutation profiles and somatic copy number alterations (SCNAs) at the multi-region and the single-cell levels. A variable extent of genomic heterogeneity was observed between the two patients, and the degree of ITH increased when analyzed on the single-cell level. We found that major SCNAs were early events in cancer development and inherited steadily. Single-cell sequencing revealed mutations and SCNAs which were hidden in bulk sequencing. In summary, we studied the ITH of rectal cancer at regional and single-cell resolution and demonstrated that variable heterogeneity existed in two patients. The mutational scenarios and SCNA profiles of two patients with treatment naïve from the same molecular subtype are quite different. Our results suggest each tumor possesses its own architecture, which may result in different diagnosis, prognosis, and drug responses. Remarkable ITH exists in the two patients we have studied, providing a preliminary impression of ITH in rectal cancer.

Advanced calculus of a single variable

CERN Document Server

Geveci, Tunc

2016-01-01

This advanced undergraduate textbook is based on a one-semester course on single variable calculus that the author has been teaching at San Diego State University for many years. The aim of this classroom-tested book is to deliver a rigorous discussion of the concepts and theorems that are dealt with informally in the first two semesters of a beginning calculus course. As such, students are expected to gain a deeper understanding of the fundamental concepts of calculus, such as limits (with an emphasis on ε-δ definitions), continuity (including an appreciation of the difference between mere pointwise and uniform continuity), the derivative (with rigorous proofs of various versions of L’Hôpital’s rule) and the Riemann integral (discussing improper integrals in-depth, including the comparison and Dirichlet tests). Success in this course is expected to prepare students for more advanced courses in real and complex analysis and this book will help to accomplish this. The first semester of advanced calculus...

Rapid isolation of IgNAR variable single-domain antibody fragments from a shark synthetic library.

Science.gov (United States)

Shao, Cui-Ying; Secombes, Chris J; Porter, Andrew J

2007-01-01

The immunoglobulin isotype IgNAR (Novel Antigen Receptor) was discovered in the serum of the nurse shark (Ginglymostoma cirratum) and wobbegong shark (Orectolobus maculates) as a homodimer of two protein chains, each composed of a single variable domain (V) domain and five constant domains. The IgNAR variable domain contains an intact antigen-binding site and functions as an independent domain able to react to antigen with both high specificity and affinity. Here we describe the successful construction of a synthetic phage-displayed library based upon a single anti-lysozyme clone HEL-5A7 scaffold, which was previously selected from an immune IgNAR variable domain library. The complementarity-determining region 3 (CDR3) loop of this clone was varied in both length and composition and the derived library was used to pan against two model proteins, lysozyme and leptin. A single anti-lysozyme clone (Ly-X20) and anti-leptin clone (Lep-12E1) were selected for further study. Both clones were shown to be functionally expressed in Escherichia coli, extremely thermostable and bind to corresponding antigens specifically. The results here demonstrate that a synthetic IgNAR variable domain library based on a single framework scaffold can be used as a route to generate antigen binders quickly, easily and without the need of immunization.

Explaining regional variation in home care use by demand and supply variables.

Science.gov (United States)

van Noort, Olivier; Schotanus, Fredo; van de Klundert, Joris; Telgen, Jan

2018-02-01

In the Netherlands, home care services like district nursing and personal assistance are provided by private service provider organizations and covered by private health insurance companies which bear legal responsibility for purchasing these services. To improve value for money, their procurement increasingly replaces fee-for-service payments with population based budgets. Setting appropriate population budgets requires adaptation to the legitimate needs of the population, whereas historical costs are likely to be influenced by supply factors as well, not all of which are necessarily legitimate. Our purpose is to explain home care costs in terms of demand and supply factors. This allows for adjusting historical cost patterns when setting population based budgets. Using expenses claims of 60 Dutch municipalities, we analyze eight demand variables and five supply variables with a multiple regression model to explain variance in the number of clients per inhabitant, costs per client and costs per inhabitant. Our models explain 69% of variation in the number of clients per inhabitant, 28% of costs per client and 56% of costs per inhabitant using demand factors. Moreover, we find that supply factors explain an additional 17-23% of variation. Predictors of higher utilization are home care organizations that are integrated with intramural nursing homes, higher competition levels among home care organizations and the availability of complementary services. Copyright © 2017. Published by Elsevier B.V.

Brief communication: Is variation in the cranial capacity of the Dmanisi sample too high to be from a single species?

Science.gov (United States)

Lee, Sang-Hee

2005-07-01

This study uses data resampling to test the null hypothesis that the degree of variation in the cranial capacity of the Dmanisi hominid sample is within the range variation of a single species. The statistical significance of the variation in the Dmanisi sample is examined using simulated distributions based on comparative samples of modern humans, chimpanzees, and gorillas. Results show that it is unlikely to find the maximum difference observed in the Dmanisi sample in distributions of female-female pairs from comparative single-species samples. Given that two sexes are represented, the difference in the Dmanisi sample is not enough to reject the null hypothesis of a single species. Results of this study suggest no compelling reason to invoke multiple taxa to explain variation in the cranial capacity of the Dmanisi hominids. (c) 2004 Wiley-Liss, Inc

Variability in creep and rupture test results in a single heat of type 304 stainless steel. R and D report LR:75:4213-01:3

International Nuclear Information System (INIS)

Leyda, W.E.; Schultz, C.C.

1975-09-01

Results of uniaxial creep and rupture tests, from a single heat of type 304 stainless steel, are examined to determine the reasons for their greater-than-expected variability. The test results were obtained as part of a program to develop and verify high temperature structural design methods for liquid metal fast breeder reactor system components. A single heat of material (heat 9T2796) is being used throughout the program, by all investigators and in several product forms, to minimize the problem of heat-to-heat variations in elevated temperature behavior. The same laboratory reanneal was specified for each product form to reduce differences in behavior among the several being used. The data discussed was obtained from the 5/8-inch diameter, hot-rolled bar product form. The laboratory reanneal was performed after finish machining to minimize specimen-to-specimen differences. In spite of these efforts to reduce data variability, significant scatter was observed in both short-time and long-time deformation response, and also in time-to-rupture results

High-fidelity teleportation of continuous-variable quantum States using delocalized single photons

DEFF Research Database (Denmark)

Andersen, Ulrik L; Ralph, Timothy C

2013-01-01

Traditional continuous-variable teleportation can only approach unit fidelity in the limit of an infinite (and unphysical) amount of squeezing. We describe a new method for continuous-variable teleportation that approaches unit fidelity with finite resources. The protocol is not based on squeezed...... states as in traditional teleportation but on an ensemble of single photon entangled states. We characterize the teleportation scheme with coherent states, mesoscopic superposition states, and two-mode squeezed states and we find several situations in which near-unity teleportation fidelity can...

Procedural facade variations from a single layout

KAUST Repository

Bao, Fan

2013-02-19

We introduce a framework to generate many variations of a facade design that look similar to a given facade layout. Starting from an input image, the facade is hierarchically segmented and labeled with a collection of manual and automatic tools. The user can then model constraints that should be maintained in any variation of the input facade design. Subsequently, facade variations are generated for different facade sizes, where multiple variations can be produced for a certain size. Computing such new facade variations has many unique challenges, and we propose a new algorithm based on interleaving heuristic search and quadratic programming. In contrast to most previous work, we focus on the generation of new design variations and not on the automatic analysis of the input\\'s structure. Adding a modeling step with the user in the loop ensures that our results routinely are of high quality. © 2013 ACM.

Procedural facade variations from a single layout

KAUST Repository

Bao, Fan; Schwarz, Michael; Wonka, Peter

2013-01-01

We introduce a framework to generate many variations of a facade design that look similar to a given facade layout. Starting from an input image, the facade is hierarchically segmented and labeled with a collection of manual and automatic tools. The user can then model constraints that should be maintained in any variation of the input facade design. Subsequently, facade variations are generated for different facade sizes, where multiple variations can be produced for a certain size. Computing such new facade variations has many unique challenges, and we propose a new algorithm based on interleaving heuristic search and quadratic programming. In contrast to most previous work, we focus on the generation of new design variations and not on the automatic analysis of the input's structure. Adding a modeling step with the user in the loop ensures that our results routinely are of high quality. © 2013 ACM.

Seasonal Variations of Oceanographic Variables and Eastern Little Tuna (Euthynnus affinis) Catches in the North Indramayu Waters Java Sea

Science.gov (United States)

Syamsuddin, Mega; Sunarto; Yuliadi, Lintang

2018-02-01

The remotely derived oceanographic variables included sea surface temperature (SST), chlorophyll-a (Chl-a) and Eastern Little Tuna (Euthynnus affinis) catches are used as a combined dataset to understand the seasonal variation of oceanographic variables and Eastern Little Tuna catches in the north Indramayu waters, Java Sea. The fish catches and remotely sensed data were analysed for the 5 years datasets from 2010-2014. This study has shown the effect of monsoon inducing oceanographic condition in the study area. Seasonal change features were dominant for all the selected oceanographic parameters of SST and Chl-a, and also Eastern Little Tuna catches, respectively. The Eastern Little Tuna catch rates have the peak season from September to December (700 to 1000) ton that corresponded with the value of SST ranging from 29 °C to 30 °C following the decreasing of Chl-a concentrations in September to November (0.4 to 0.5) mg m-3. The monsoonal system plays a great role in determining the variability of oceanographic conditions and catch in the north Indramayu waters, Java Sea. The catches seemed higher during the northwest monsoon than in the southeast monsoon for all year observations except in 2010. The wavelet spectrum analysis results confirmed that Eastern Little Tuna catches had seasonal and inter-annual variations during 2012-2014. The SST had seasonal variations during 2010-2014. The Chl-a also showed seasonal variations during 2010-2011 and interannual variations during 2011-2014. Our results would benefit the fishermen and policy makers to have better management for sustainable catch in the study area.

Genetics and variation

Science.gov (United States)

John R. Jones; Norbert V. DeByle

1985-01-01

The broad genotypic variability in quaking aspen (Populus tremuloides Michx.), that results in equally broad phenotypic variability among clones is important to the ecology and management of this species. This chapter considers principles of aspen genetics and variation, variation in aspen over its range, and local variation among clones. For a more...

Efficient family-based model checking via variability abstractions

DEFF Research Database (Denmark)

Dimovski, Aleksandar; Al-Sibahi, Ahmad Salim; Brabrand, Claus

2016-01-01

with the abstract model checking of the concrete high-level variational model. This allows the use of Spin with all its accumulated optimizations for efficient verification of variational models without any knowledge about variability. We have implemented the transformations in a prototype tool, and we illustrate......Many software systems are variational: they can be configured to meet diverse sets of requirements. They can produce a (potentially huge) number of related systems, known as products or variants, by systematically reusing common parts. For variational models (variational systems or families...... of related systems), specialized family-based model checking algorithms allow efficient verification of multiple variants, simultaneously, in a single run. These algorithms, implemented in a tool Snip, scale much better than ``the brute force'' approach, where all individual systems are verified using...

Phenotypic Variability in the Coccolithophore Emiliania huxleyi.

Science.gov (United States)

Blanco-Ameijeiras, Sonia; Lebrato, Mario; Stoll, Heather M; Iglesias-Rodriguez, Debora; Müller, Marius N; Méndez-Vicente, Ana; Oschlies, Andreas

2016-01-01

Coccolithophores are a vital part of oceanic phytoplankton assemblages that produce organic matter and calcium carbonate (CaCO3) containing traces of other elements (i.e. Sr and Mg). Their associated carbon export from the euphotic zone to the oceans' interior plays a crucial role in CO2 feedback mechanisms and biogeochemical cycles. The coccolithophore Emiliania huxleyi has been widely studied as a model organism to understand physiological, biogeochemical, and ecological processes in marine sciences. Here, we show the inter-strain variability in physiological and biogeochemical traits in 13 strains of E. huxleyi from various biogeographical provinces obtained from culture collections commonly used in the literature. Our results demonstrate that inter-strain genetic variability has greater potential to induce larger phenotypic differences than the phenotypic plasticity of single strains cultured under a broad range of variable environmental conditions. The range of variation found in physiological parameters and calcite Sr:Ca highlights the need to reconsider phenotypic variability in paleoproxy calibrations and model parameterizations to adequately translate findings from single strain laboratory experiments to the real ocean.

Phenotypic Variability in the Coccolithophore Emiliania huxleyi.

Directory of Open Access Journals (Sweden)

Sonia Blanco-Ameijeiras

Full Text Available Coccolithophores are a vital part of oceanic phytoplankton assemblages that produce organic matter and calcium carbonate (CaCO3 containing traces of other elements (i.e. Sr and Mg. Their associated carbon export from the euphotic zone to the oceans' interior plays a crucial role in CO2 feedback mechanisms and biogeochemical cycles. The coccolithophore Emiliania huxleyi has been widely studied as a model organism to understand physiological, biogeochemical, and ecological processes in marine sciences. Here, we show the inter-strain variability in physiological and biogeochemical traits in 13 strains of E. huxleyi from various biogeographical provinces obtained from culture collections commonly used in the literature. Our results demonstrate that inter-strain genetic variability has greater potential to induce larger phenotypic differences than the phenotypic plasticity of single strains cultured under a broad range of variable environmental conditions. The range of variation found in physiological parameters and calcite Sr:Ca highlights the need to reconsider phenotypic variability in paleoproxy calibrations and model parameterizations to adequately translate findings from single strain laboratory experiments to the real ocean.

Contribution of LFP dynamics to single-neuron spiking variability in motor cortex during movement execution

Science.gov (United States)

Rule, Michael E.; Vargas-Irwin, Carlos; Donoghue, John P.; Truccolo, Wilson

2015-01-01

Understanding the sources of variability in single-neuron spiking responses is an important open problem for the theory of neural coding. This variability is thought to result primarily from spontaneous collective dynamics in neuronal networks. Here, we investigate how well collective dynamics reflected in motor cortex local field potentials (LFPs) can account for spiking variability during motor behavior. Neural activity was recorded via microelectrode arrays implanted in ventral and dorsal premotor and primary motor cortices of non-human primates performing naturalistic 3-D reaching and grasping actions. Point process models were used to quantify how well LFP features accounted for spiking variability not explained by the measured 3-D reach and grasp kinematics. LFP features included the instantaneous magnitude, phase and analytic-signal components of narrow band-pass filtered (δ,θ,α,β) LFPs, and analytic signal and amplitude envelope features in higher-frequency bands. Multiband LFP features predicted single-neuron spiking (1ms resolution) with substantial accuracy as assessed via ROC analysis. Notably, however, models including both LFP and kinematics features displayed marginal improvement over kinematics-only models. Furthermore, the small predictive information added by LFP features to kinematic models was redundant to information available in fast-timescale (spiking history. Overall, information in multiband LFP features, although predictive of single-neuron spiking during movement execution, was redundant to information available in movement parameters and spiking history. Our findings suggest that, during movement execution, collective dynamics reflected in motor cortex LFPs primarily relate to sensorimotor processes directly controlling movement output, adding little explanatory power to variability not accounted by movement parameters. PMID:26157365

Ground Motion Uncertainty and Variability (single-station sigma): Insights from Euroseistest, Greece

Science.gov (United States)

Ktenidou, O. J.; Roumelioti, Z.; Abrahamson, N. A.; Cotton, F.; Pitilakis, K.

2014-12-01

Despite recent improvements in networks and data, the global aleatory uncertainty (sigma) in GMPEs is still large. One reason is the ergodic approach, where we combine data in space to make up for lack of data in time. By estimating the systematic site response, we can make site-specific GMPEs and use a lower, site-specific uncertainty: single-station sigma. In this study we use the EUROSEISTEST database (http://euroseisdb.civil.auth.gr), which has two distinct advantages: good existing knowledge of site conditions at all stations, and careful relocation of the recorded events. Constraining the site and source parameters as best we can, we minimise the within- and between-events components of the global, ergodic sigma. Following that, knowledge of the site response from empirical and theoretical approaches permits us to move on to single-station sigma. The variability per site is not clearly correlated to the site class. We show that in some cases knowledge of Vs30 is not sufficient, and that site-specific data are needed to capture the response, possibly due to 2D/3D effects from complex geometry. Our values of single-station sigma are low compared to the literature. This may be due to the good ray coverage we have in all directions for small, nearby records. Indeed, our single-station sigma values are similar to published single-path values, which means that they may correspond to a fully -rather than partially- non-ergodic approach. We find larger ground motion variability for short distances and small magnitudes. This may be related to the uncertainty in the depth affecting nearby records more, or to stress drop and causing trade-offs between the source and site terms for small magnitudes.

The variable stars of NGC 1866

International Nuclear Information System (INIS)

Welch, D.L.; Cote, P.; Fischer, P.; Mateo, M.; Madore, B.F.

1991-01-01

A search has been conducted for new variables in the LMC cluster NGC 1866 using new multiepoch CCD photometry. Eight previously unknown Cepheid variables, most near the cluster core, are found. Of the new variables reported by Storm et al. (188), only six of 10 appear to be Cepheids and one of these is not a member. Periods and mean magnitudes and colors for sufficiently uncrowded variables are reported, as is one red giant variable of long period and one Cepheid which is a single-lined spectroscopic binary with a velocity semiamplitude greater than or equal to 10.5 km/s. The variation of light-curve amplitude with position in the instability strip is reported along with an apparently nonvariable star, which is a radial velocity member, in the strip. A true distance modulus of 18.57 + or - 0.01 mag is obtained for the cluster. 36 refs

Behavioral and Single-Neuron Sensitivity to Millisecond Variations in Temporally Patterned Communication Signals.

Science.gov (United States)

Baker, Christa A; Ma, Lisa; Casareale, Chelsea R; Carlson, Bruce A

2016-08-24

In many sensory pathways, central neurons serve as temporal filters for timing patterns in communication signals. However, how a population of neurons with diverse temporal filtering properties codes for natural variation in communication signals is unknown. Here we addressed this question in the weakly electric fish Brienomyrus brachyistius, which varies the time intervals between successive electric organ discharges to communicate. These fish produce an individually stereotyped signal called a scallop, which consists of a distinctive temporal pattern of ∼8-12 electric pulses. We manipulated the temporal structure of natural scallops during behavioral playback and in vivo electrophysiology experiments to probe the temporal sensitivity of scallop encoding and recognition. We found that presenting time-reversed, randomized, or jittered scallops increased behavioral response thresholds, demonstrating that fish's electric signaling behavior was sensitive to the precise temporal structure of scallops. Next, using in vivo intracellular recordings and discriminant function analysis, we found that the responses of interval-selective midbrain neurons were also sensitive to the precise temporal structure of scallops. Subthreshold changes in membrane potential recorded from single neurons discriminated natural scallops from time-reversed, randomized, and jittered sequences. Pooling the responses of multiple neurons improved the discriminability of natural sequences from temporally manipulated sequences. Finally, we found that single-neuron responses were sensitive to interindividual variation in scallop sequences, raising the question of whether fish may analyze scallop structure to gain information about the sender. Collectively, these results demonstrate that a population of interval-selective neurons can encode behaviorally relevant temporal patterns with millisecond precision. The timing patterns of action potentials, or spikes, play important roles in representing

Analysis of linguistic terms of variables representing the wave of arterial diameter variation in radial arteries using fuzzy entropies

International Nuclear Information System (INIS)

Nuno Almirantearena, F; Introzzi, A; Clara, F; Burillo Lopez, P

2007-01-01

In this work we use 53 Arterial Diameter Variation (ADV) waves extracted from radial artery of normotense males, along with the values of variables that represent the ADV wave, obtained by means of multivariate analysis. Then, we specify the linguistic variables and the linguistic terms. The variables are fuzzified using triangular and trapezoidal fuzzy numbers. We analyze the fuzziness of the linguistic terms by applying discrete and continuous fuzzy entropies. Finally, we infer which variable presents the greatest disorder associated to the loss of arterial elasticity in radial artery

a Thtee-Dimensional Variational Assimilation Scheme for Satellite Aod

Science.gov (United States)

Liang, Y.; Zang, Z.; You, W.

2018-04-01

A three-dimensional variational data assimilation scheme is designed for satellite AOD based on the IMPROVE (Interagency Monitoring of Protected Visual Environments) equation. The observation operator that simulates AOD from the control variables is established by the IMPROVE equation. All of the 16 control variables in the assimilation scheme are the mass concentrations of aerosol species from the Model for Simulation Aerosol Interactions and Chemistry scheme, so as to take advantage of this scheme in providing comprehensive analyses of species concentrations and size distributions as well as be calculating efficiently. The assimilation scheme can save computational resources as the IMPROVE equation is a quadratic equation. A single-point observation experiment shows that the information from the single-point AOD is effectively spread horizontally and vertically.

Single-cell measurement of red blood cell oxygen affinity.

Science.gov (United States)

Di Caprio, Giuseppe; Stokes, Chris; Higgins, John M; Schonbrun, Ethan

2015-08-11

Oxygen is transported throughout the body by hemoglobin (Hb) in red blood cells (RBCs). Although the oxygen affinity of blood is well-understood and routinely assessed in patients by pulse oximetry, variability at the single-cell level has not been previously measured. In contrast, single-cell measurements of RBC volume and Hb concentration are taken millions of times per day by clinical hematology analyzers, and they are important factors in determining the health of the hematologic system. To better understand the variability and determinants of oxygen affinity on a cellular level, we have developed a system that quantifies the oxygen saturation, cell volume, and Hb concentration for individual RBCs in high throughput. We find that the variability in single-cell saturation peaks at an oxygen partial pressure of 2.9%, which corresponds to the maximum slope of the oxygen-Hb dissociation curve. In addition, single-cell oxygen affinity is positively correlated with Hb concentration but independent of osmolarity, which suggests variation in the Hb to 2,3-diphosphoglycerate (2-3 DPG) ratio on a cellular level. By quantifying the functional behavior of a cellular population, our system adds a dimension to blood cell analysis and other measurements of single-cell variability.

An ultraviolet study of B[e] stars: evidence for pulsations, luminous blue variable type variations and processes in envelopes

Science.gov (United States)

Krtičková, I.; Krtička, J.

2018-06-01

Stars that exhibit a B[e] phenomenon comprise a very diverse group of objects in a different evolutionary status. These objects show common spectral characteristics, including the presence of Balmer lines in emission, forbidden lines and strong infrared excess due to dust. Observations of emission lines indicate illumination by an ultraviolet ionizing source, which is key to understanding the elusive nature of these objects. We study the ultraviolet variability of many B[e] stars to specify the geometry of the circumstellar environment and its variability. We analyse massive hot B[e] stars from our Galaxy and from the Magellanic Clouds. We study the ultraviolet broad-band variability derived from the flux-calibrated data. We determine variations of individual lines and the correlation with the total flux variability. We detected variability of the spectral energy distribution and of the line profiles. The variability has several sources of origin, including light absorption by the disc, pulsations, luminous blue variable type variations, and eclipses in the case of binaries. The stellar radiation of most of B[e] stars is heavily obscured by circumstellar material. This suggests that the circumstellar material is present not only in the disc but also above its plane. The flux and line variability is consistent with a two-component model of a circumstellar environment composed of a dense disc and an ionized envelope. Observations of B[e] supergiants show that many of these stars have nearly the same luminosity, about 1.9 × 105 L⊙, and similar effective temperatures.

Gauging Variational Inference

Energy Technology Data Exchange (ETDEWEB)

Chertkov, Michael [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Ahn, Sungsoo [Korea Advanced Inst. Science and Technology (KAIST), Daejeon (Korea, Republic of); Shin, Jinwoo [Korea Advanced Inst. Science and Technology (KAIST), Daejeon (Korea, Republic of)

2017-05-25

Computing partition function is the most important statistical inference task arising in applications of Graphical Models (GM). Since it is computationally intractable, approximate methods have been used to resolve the issue in practice, where meanfield (MF) and belief propagation (BP) are arguably the most popular and successful approaches of a variational type. In this paper, we propose two new variational schemes, coined Gauged-MF (G-MF) and Gauged-BP (G-BP), improving MF and BP, respectively. Both provide lower bounds for the partition function by utilizing the so-called gauge transformation which modifies factors of GM while keeping the partition function invariant. Moreover, we prove that both G-MF and G-BP are exact for GMs with a single loop of a special structure, even though the bare MF and BP perform badly in this case. Our extensive experiments, on complete GMs of relatively small size and on large GM (up-to 300 variables) confirm that the newly proposed algorithms outperform and generalize MF and BP.

Variability of femoral muscle attachments.

Science.gov (United States)

Duda, G N; Brand, D; Freitag, S; Lierse, W; Schneider, E

1996-09-01

Analytical and experimental models of the musculoskeletal system often assume single values rather than ranges for anatomical input parameters. The hypothesis of the present study was that anatomical variability significantly influences the results of biomechanical analyses, specifically regarding the moment arms of the various thigh muscles. Insertions and origins of muscles crossing or attaching to the femur were digitized in six specimens. Muscle volumes were measured; muscle attachment area and centroid location were computed. To demonstrate the influence of inter-individual anatomic variability on a mechanical modeling parameter, the corresponding range of muscle moment arms were calculated. Standard deviations, as a percentage of the mean, were about 70% for attachment area and 80% for muscle volume and attachment centroid location. The resulting moment arms of the m. gluteus maximus and m. rectus femoris were especially sensitive to anatomical variations (SD 65%). The results indicate that sensitivity to anatomical variations should be analyzed in any investigation simulating musculoskeletal interactions. To avoid misinterpretations, investigators should consider using several anatomical configurations rather than relying on a mean data set.

Reference free phasing and representation of complex variation

DEFF Research Database (Denmark)

Jensen, Jacob Malte

2017-01-01

High throughput sequencing has revolutionized our ability to interrogate genomes and entire human genomes are sequenced daily across the world. Mapping of short reads to a reference genome has enhanced our ability to detect genetic variation and is currently the most widely used technology....... Therefore, new methods for detecting variation that reduce reference bias are needed including ways of representing genomes that account for the variability within and between populations. The major histocompatibility complex (MHC) region is one of the most diverse and complex regions of the human genome...... to detect and call variation in humans. However, it has become evident that mapping of short reads to a single reference genome is subject to ascertainment bias (reference bias). This bias is especially pronounced in complex regions of the genome and particularly hampers detection of structural variation...

Geophysical variables and behavior: XXI. Geomagnetic variation as possible enhancement stimuli for UFO reports preceding earthtremors.

Science.gov (United States)

Persinger, M A

1985-02-01

The contribution of geomagnetic variation to the occurrence of UFORs (reports of UFOs) within the New Madrid States during the 6-mo. increments before increases in the numbers of IV-V or less intensity earthquakes within the central USA was determined. Although statistically significant zero-order correlations existed between measures of earthquakes, UFORs and geomagnetic variability, the association between the latter two deteriorated markedly when their shared variance with earthquakes was held constant. These outcomes are compatible with the hypothesis that geomagnetic variability (or phenomena associated with it) may enhance UFORs but only if tectonic stress and strain are increasing within the region.

A single dose of dark chocolate increases parasympathetic modulation and heart rate variability in healthy subjects

Directory of Open Access Journals (Sweden)

Ana Amélia Machado DUARTE

Full Text Available ABSTRACT Objective: The aim of this study was to investigate the acute effect of a single dose of dark chocolate (70% cocoa on blood pressure and heart rate variability. Methods: Thirty-one healthy subjects (aged 18-25 years; both sexes were divided into two groups: 10 subjects in the white chocolate (7.4 g group and 21 in the dark chocolate (10 g group; measurements were performed at the university's physiology lab. An electrocardiogram measured the sympathovagal balance by spectral and symbolic analysis. Results: A single dose of dark chocolate significantly reduced systolic blood pressure and heart rate. After consuming 10 g of dark chocolate, significant increases were observed for heart rate variability, standard deviation of RR intervals standard deviation of all NN intervals, square root of the mean squared differences between adjacent normal RR intervals root mean square of successive differences, and an increase in the high frequency component in absolute values, representing the parasympathetic modulation. Conclusion: In conclusion the importance of our results lies in the magnitude of the response provoked by a single dose of cocoa. Just 10 g of cocoa triggered a significant increase in parasympathetic modulation and heart rate variability. These combined effects can potentially increase life expectancy because a reduction in heart rate variability is associated with several cardiovascular diseases and higher mortality.

Wind and load variability in the Nordic countries

Energy Technology Data Exchange (ETDEWEB)

Holttinen, H.; Rissanen, S. [VTT Technical Research Centre of Finland, Espoo (Finland); Larsen, X. [Danmarks Tekniske Universitet, Lyngby (Denmark); Loevholm, A. L. [Kjeller Vindteknikk (Norway)

2013-04-15

This publication analysed the variability of wind production and load in Denmark, Finland, Sweden, and the Nordic region as a whole, based on real data measured from large-scale wind power during 2009-2011. The Nordic-wide wind power time series was scaled up such that Sweden had same amount of wind power production than Denmark, and Finland and Norway only 50% of the wind power production in Denmark. Wind power production in Denmark and Sweden is somewhat correlated (coefficient 0.7) but less correlation is found between the other countries. The variations from one hour to the next are only weakly correlated between all countries, even between Denmark and Sweden. Largest variations occur when the production is approximately 30-70% of installed capacity and variability is low during periods of light winds. The variability in shorter time scales was less than the hourly variations. During the three years analysed in this publication there were few storm incidents and they did not produce dramatic wind power ramps in the Nordic region. Wind and load variations are not correlated between the countries, which is beneficial from the viewpoint of wind integration. The smoothing effect is shown as reduction of variability from a single country to Nordic-wide wind power. The impact of wind power on the variability that the system experiences is evaluated by analysing the variability of net load with different wind power penetration levels. The Nordic-wide wind power production increases the highest hourly ramps by 2.4% (up) and -3.6% (down) of installed wind power capacity when there is 20% wind power penetration and by 2.7% (up) and -4.7% (down) for 30% wind penetration. These results assess the impacts of variability only. The next step will be assessing the uncertainty from forecast errors. The timing of ramp events, and occurrence of high-wind and low-load are studied. With current wind penetration, low production levels (2-5% of installed wind power) can occur in a

Single cell Hi-C reveals cell-to-cell variability in chromosome structure

Science.gov (United States)

Schoenfelder, Stefan; Yaffe, Eitan; Dean, Wendy; Laue, Ernest D.; Tanay, Amos; Fraser, Peter

2013-01-01

Large-scale chromosome structure and spatial nuclear arrangement have been linked to control of gene expression and DNA replication and repair. Genomic techniques based on chromosome conformation capture assess contacts for millions of loci simultaneously, but do so by averaging chromosome conformations from millions of nuclei. Here we introduce single cell Hi-C, combined with genome-wide statistical analysis and structural modeling of single copy X chromosomes, to show that individual chromosomes maintain domain organisation at the megabase scale, but show variable cell-to-cell chromosome territory structures at larger scales. Despite this structural stochasticity, localisation of active gene domains to boundaries of territories is a hallmark of chromosomal conformation. Single cell Hi-C data bridge current gaps between genomics and microscopy studies of chromosomes, demonstrating how modular organisation underlies dynamic chromosome structure, and how this structure is probabilistically linked with genome activity patterns. PMID:24067610

Endogenous sources of variation in language acquisition.

Science.gov (United States)

Han, Chung-Hye; Musolino, Julien; Lidz, Jeffrey

2016-01-26

A fundamental question in the study of human language acquisition centers around apportioning explanatory force between the experience of the learner and the core knowledge that allows learners to represent that experience. We provide a previously unidentified kind of data identifying children's contribution to language acquisition. We identify one aspect of grammar that varies unpredictably across a population of speakers of what is ostensibly a single language. We further demonstrate that the grammatical knowledge of parents and their children is independent. The combination of unpredictable variation and parent-child independence suggests that the relevant structural feature is supplied by each learner independent of experience with the language. This structural feature is abstract because it controls variation in more than one construction. The particular case we examine is the position of the verb in the clause structure of Korean. Because Korean is a head-final language, evidence for the syntactic position of the verb is both rare and indirect. We show that (i) Korean speakers exhibit substantial variability regarding this aspect of the grammar, (ii) this variability is attested between speakers but not within a speaker, (iii) this variability controls interpretation in two surface constructions, and (iv) it is independent in parents and children. According to our findings, when the exposure language is compatible with multiple grammars, learners acquire a single systematic grammar. Our observation that children and their parents vary independently suggests that the choice of grammar is driven in part by a process operating internal to individual learners.

Period Variations for the Cepheid VZ Cyg

Science.gov (United States)

Sirorattanakul, Krittanon; Engle, Scott; Pepper, Joshua; Wells, Mark; Laney, Clifton D.; Rodriguez, Joseph E.; Stassun, Keivan G.

2017-12-01

The Cepheid Period-Luminosity law is a key rung on the extragalactic distance ladder. However, numerous Cepheids are known to undergo period variations. Monitoring, refining, and understanding these period variations allows us to better determine the parameters of the Cepheids themselves and of the instability strip in which they reside, and to test models of stellar evolution. VZ Cyg, a classical Cepheid pulsating at ˜4.864 days, has been observed for over 100 years. Combining data from literature observations, the Kilodegree Extremely Little Telescope (KELT) transit survey, and new targeted observations with the Robotically Controlled Telescope (RCT) at Kitt Peak, we find a period change rate of dP/dt = -0.0642 ± 0.0018 s yr-1. However, when only the recent observations are examined, we find a much higher period change rate of dP/dt = -0.0923 ± 0.0110 s yr-1. This higher rate could be due to an apparent long-term (P ≈ 26.5 years) cyclic period variation. The possible interpretations of this single Cepheid’s complex period variations underscore both the need to regularly monitor pulsating variables and the important benefits that photometric surveys such as KELT can have on the field. Further monitoring of this interesting example of Cepheid variability is recommended to confirm and better understand the possible cyclic period variations. Further, Cepheid timing analyses are necessary to fully understand their current behaviors and parameters, as well as their evolutionary histories.

High inter-specimen variability of baseline data for the tibio-talar contact area.

Science.gov (United States)

Matricali, Giovanni A; Bartels, Ward; Labey, Luc; Dereymaeker, Greta Ph E; Luyten, Frank P; Vander Sloten, Jos

2009-01-01

The tibio-talar contact area has been widely investigated to monitor biomechanical changes due to articular incongruities or an altered loading. This study aims to investigate for the first time in a systematic way the extent of the inter-specimen variability of the tibio-talar contact area, and its repercussions when analyzing data concerning this parameter. Ten specimens were loaded to record the tibio-talar contact characteristics by use of pressure sensitive film. The size of the talar dome area, the size of the (normalized) tibio-talar contact area, the position of the tibio-talar contact area, and the shape of the latter were determined and analyzed. Inter-specimen variability was expressed as the coefficient of variation and was calculated for the datasets of previous studies as well. The size of the tibio-talar contact area showed a very high inter-specimen variability, as is the case in previous studies. This high variability persisted when a normalized tibio-talar contact area was calculated. The shape of the tibio-talar contact area showed some basic characteristics, but a high variation in details could be observed. Every specimen can be considered to have its own "ankle print". By this variability, articular incongruities are expected to have a different effect on local biomechanical characteristics in every single individual. Therefore, every single case has to be evaluated and reported for significant changes. In case of modeling, this also underscores the need to use subject specific models fed by sets of parameters derived from a series of single specimens.

Variables separation of the spectral BRDF for better understanding color variation in special effect pigment coatings.

Science.gov (United States)

Ferrero, Alejandro; Rabal, Ana María; Campos, Joaquín; Pons, Alicia; Hernanz, María Luisa

2012-06-01

A type of representation of the spectral bidirectional reflectance distribution function (BRDF) is proposed that distinctly separates the spectral variable (wavelength) from the geometrical variables (spherical coordinates of the irradiation and viewing directions). Principal components analysis (PCA) is used in order to decompose the spectral BRDF in decorrelated spectral components, and the weight that they have at every geometrical configuration of irradiation/viewing is established. This method was applied to the spectral BRDF measurement of a special effect pigment sample, and four principal components with relevant variance were identified. These four components are enough to reproduce the great diversity of spectral reflectances observed at different geometrical configurations. Since this representation is able to separate spectral and geometrical variables, it facilitates the interpretation of the color variation of special effect pigments coatings versus the geometrical configuration of irradiation/viewing.

Experimental analysis of the effects of the operating variables on the performance of a single PEMFC

International Nuclear Information System (INIS)

Santarelli, M.G.; Torchio, M.F.

2007-01-01

This paper shows and discusses the results obtained after an experimental session devoted to characterization of the behavior of a single proton exchange membrane fuel cell (PEMFC) with variation of the values of six operation variables: cell temperature; anode flow temperature in saturation and dry conditions; cathode flow temperature in saturation and dry conditions; and reactants pressure. The fuel cell employed for the experiments is a single PEMFC with a 25 cm 2 Nafion[reg] 115 membrane. As expected, a higher cell temperature increases the membrane conductivity and the exchange current density with an improvement of the cell behaviour. An increase in the reactant saturation temperature also leads to a better performance, especially in the case of low and medium loads. Conversely, in the case of a low cell temperature, it is better to reduce the water inlet mass flow at high loads to avoid electrode flooding. With an increase of the reactant operating pressure, the maximum of the power curve shifts to higher current densities, and this could be linked to the corresponding shift of the limiting current density. A combined effect of humidification and operating pressure was observed: the increase of operating pressure did not offer a significant improvement when the reactants were dry, while leading to improvements when a partial humidification (only at the anode) was adopted. The best improvements due to a pressure increase were observed when both anode and cathode are humidified. Finally, some tests of other authors at the same operation conditions have been considered, and a comparison has been done

[Hypothesis on the equilibrium point and variability of amplitude, speed and time of single-joint movement].

Science.gov (United States)

Latash, M; Gottleib, G

1990-01-01

Problems of single-joint movement variability are analysed in the framework of the equilibrium-point hypothesis (the lambda-model). Control of the movements is described with three parameters related to movement amplitude speed, and time. Three strategies emerge from this description. Only one of them is likely to lead to a Fitts' type speed-accuracy trade-off. Experiments were performed to test one of the predictions of the model. Subjects performed identical sets of single-joint fast movements with open or closed eyes and some-what different instructions. Movements performed with closed eyes were characterized with higher peak speeds and unchanged variability in seeming violation of the Fitt's law and in a good correspondence to the model.

Variables associated with active spondylolysis.

Science.gov (United States)

Gregg, Chris D; Dean, Sarah; Schneiders, Anthony G

2009-11-01

Retrospective non-experimental study. To investigate variables associated with active spondylolysis. A retrospective study audited clinical data over a two year period from patients with suspected spondylolysis that were referred for a SPECT bone scan. Six exploratory variables were identified and analysed using uni- and multi-variate regression from 82 patient records to determine the association between symptomatic, physical and demographic characteristics, and the presence of an active spondylolysis. Tertiary level multidisciplinary private practice sports medicine clinic. All patients with low back pain that required a SPECT bone scan to confirm suspected spondylolysis. 82 subjects were included in the final sample group. The six exploratory variables included Age, Gender, Injury duration, Injury onset, Sports participation and the result of the Single Leg Hyperextension Test. The dependent outcome variable was the result of the SPECT bone scan (scan-positive or scan-negative). Adolescent males had a higher incidence of spondylolysis detected by SPECT bone scan compared to other patients and a statistically significant association was demonstrated for both age (p=0.01) and gender (p=0.01). Subjects with an active spondylolysis were nearly five times more likely to be male and aged less than 20 years. Furthermore, the likelihood ratio indicated that adolescent males with suspected spondylolysis were three and a half times more likely to have a positive bone scan result. The Single Leg Hyperextension Test did not demonstrate a statistically significant association with spondylolysis (p=0.47). Clinicians assessing for a predisposition to the development of spondylolysis should consider the gender and age of the patient and not rely on the predictive ability of the Single Leg Hyperextension Test.

Random phenotypic variation of yeast (Saccharomyces cerevisiae) single-gene knockouts fits a double pareto-lognormal distribution.

Science.gov (United States)

Graham, John H; Robb, Daniel T; Poe, Amy R

2012-01-01

Distributed robustness is thought to influence the buffering of random phenotypic variation through the scale-free topology of gene regulatory, metabolic, and protein-protein interaction networks. If this hypothesis is true, then the phenotypic response to the perturbation of particular nodes in such a network should be proportional to the number of links those nodes make with neighboring nodes. This suggests a probability distribution approximating an inverse power-law of random phenotypic variation. Zero phenotypic variation, however, is impossible, because random molecular and cellular processes are essential to normal development. Consequently, a more realistic distribution should have a y-intercept close to zero in the lower tail, a mode greater than zero, and a long (fat) upper tail. The double Pareto-lognormal (DPLN) distribution is an ideal candidate distribution. It consists of a mixture of a lognormal body and upper and lower power-law tails. If our assumptions are true, the DPLN distribution should provide a better fit to random phenotypic variation in a large series of single-gene knockout lines than other skewed or symmetrical distributions. We fit a large published data set of single-gene knockout lines in Saccharomyces cerevisiae to seven different probability distributions: DPLN, right Pareto-lognormal (RPLN), left Pareto-lognormal (LPLN), normal, lognormal, exponential, and Pareto. The best model was judged by the Akaike Information Criterion (AIC). Phenotypic variation among gene knockouts in S. cerevisiae fits a double Pareto-lognormal (DPLN) distribution better than any of the alternative distributions, including the right Pareto-lognormal and lognormal distributions. A DPLN distribution is consistent with the hypothesis that developmental stability is mediated, in part, by distributed robustness, the resilience of gene regulatory, metabolic, and protein-protein interaction networks. Alternatively, multiplicative cell growth, and the mixing of

The influence of talker and foreign-accent variability on spoken word identification.

Science.gov (United States)

Bent, Tessa; Holt, Rachael Frush

2013-03-01

In spoken word identification and memory tasks, stimulus variability from numerous sources impairs performance. In the current study, the influence of foreign-accent variability on spoken word identification was evaluated in two experiments. Experiment 1 used a between-subjects design to test word identification in noise in single-talker and two multiple-talker conditions: multiple talkers with the same accent and multiple talkers with different accents. Identification performance was highest in the single-talker condition, but there was no difference between the single-accent and multiple-accent conditions. Experiment 2 further explored word recognition for multiple talkers in single-accent versus multiple-accent conditions using a mixed design. A detriment to word recognition was observed in the multiple-accent condition compared to the single-accent condition, but the effect differed across the language backgrounds tested. These results demonstrate that the processing of foreign-accent variation may influence word recognition in ways similar to other sources of variability (e.g., speaking rate or style) in that the inclusion of multiple foreign accents can result in a small but significant performance decrement beyond the multiple-talker effect.

Variation in caffeine concentration in single coffee beans.

Science.gov (United States)

Fox, Glen P; Wu, Alex; Yiran, Liang; Force, Lesleigh

2013-11-13

Twenty-eight coffee samples from around the world were tested for caffeine levels to develop near-infrared reflectance spectroscopy (NIRS) calibrations for whole and ground coffee. Twenty-five individual beans from five of those coffees were used to develop a NIRS calibration for caffeine concentration in single beans. An international standard high-performance liquid chromatography method was used to analyze for caffeine content. Coffee is a legal stimulant and possesses a number of heath properties. However, there is variation in the level of caffeine in brewed coffee and other caffeinated beverages. Being able to sort beans on the basis of caffeine concentration will improve quality control in the level of caffeine in those beverages. The range in caffeine concentration was from 0.01 mg/g (decaffeinated coffee) to 19.9 mg/g (Italian coffee). The majority of coffees were around 10.0-12.0 mg/g. The NIRS results showed r(2) values for bulk unground and ground coffees were >0.90 with standard errors coffee beans. One application of this calibration could be sorting beans on caffeine concentration to provide greater quality control for high-end markets. Furthermore, bean sorting may open new markets for novel coffee products.

Single-nucleotide variations in the genes encoding the mitochondrial Hsp60/Hsp10 chaperone system and their disease-causing potential

DEFF Research Database (Denmark)

Bross, Peter; Li, Zhijie; Hansen, Jakob

2007-01-01

for variations in the HSPD1 and HSPE1 genes encoding the mitochondrial Hsp60/Hsp10 chaperone complex: two patients with multiple mitochondrial enzyme deficiency, 61 sudden infant death syndrome cases (MIM: #272120), and 60 patients presenting with ethylmalonic aciduria carrying non-synonymous susceptibility...... variations in the ACADS gene (MIM: *606885 and #201470). Besides previously reported variations we detected six novel variations: two in the bidirectional promoter region, and one synonymous and three non-synonymous variations in the HSPD1 coding region. One of the non-synonymous variations was polymorphic...... in patient and control samples, and the rare variations were each only found in single patients and absent in 100 control chromosomes. Functional investigation of the effects of the variations in the promoter region and the non-synonymous variations in the coding region indicated that none of them had...

Seasonal variations of radon concentrations in single-family houses with different sub-structures

DEFF Research Database (Denmark)

Majborn, B.

1992-01-01

Seasonal variations of indoor radon concentrations have been studied in 70 single-family houses selected according to the type of sub-structure and the type of soil underneath the house. Five categories of sub-structure were included - slab-on-grade, crawl space, basement, and combinations...... of basement with slab-on-grade or crawl space. Half of the houses are located on clayey till and the other half on glaciofluvial gravel. In each house radon was measured in a living room and a bedroom, in the basement if present, and in the crawl space if present and accessible. The measurements were made...... with track detectors on a quarterly basis throughout a year. For living rooms and bedrooms the seasonal variations range from being highly significant for the slab-on-grade houses to being insignificant for the crawl space houses. For basements and crawl spaces the geometric mean radon concentrations do...

Life course variations in the heritability of body size

DEFF Research Database (Denmark)

Zhao, J.; Luan, J.A.; Sharp, S.J.

aim was to use this approach to investigate the life course variations in heritability of body size. Methods: We analysed height, weight and body mass index variables at 11 time-points in 2,452 individuals (1,225 men, 1,227 women) born in 1946 and enrolled in the MRC National Survey of Health...... and Development (NSHD), with genotypes at 147,949 single nucleotide polymorphisms (SNPs) on Metabochips which were subsequently imputed to 506,255 according to the 1000Genomes project. We obtained genome-wide kinship matrices using genotypes at SNPs on Metabochips and genotypes at all SNPs, which were used.......11(0-0.20), 0.10(0-0.22) for height, weight and body mass index, respectively. Variation in estimates was also seen between alternative procedures. Conclusion: This work supports the utility of large-scale genotype data in heritability estimation and highlights the age-related variability in genetic...

Quantitative historical analysis uncovers a single dimension of complexity that structures global variation in human social organization

Science.gov (United States)

Turchin, Peter; Currie, Thomas E.; Whitehouse, Harvey; François, Pieter; Feeney, Kevin; Mullins, Daniel; Hoyer, Daniel; Collins, Christina; Grohmann, Stephanie; Mendel-Gleason, Gavin; Turner, Edward; Dupeyron, Agathe; Cioni, Enrico; Reddish, Jenny; Levine, Jill; Jordan, Greine; Brandl, Eva; Williams, Alice; Cesaretti, Rudolf; Krueger, Marta; Ceccarelli, Alessandro; Figliulo-Rosswurm, Joe; Tuan, Po-Ju; Peregrine, Peter; Marciniak, Arkadiusz; Preiser-Kapeller, Johannes; Kradin, Nikolay; Korotayev, Andrey; Palmisano, Alessio; Baker, David; Bidmead, Julye; Bol, Peter; Christian, David; Cook, Connie; Covey, Alan; Feinman, Gary; Júlíusson, Árni Daníel; Kristinsson, Axel; Miksic, John; Mostern, Ruth; Petrie, Cameron; Rudiak-Gould, Peter; ter Haar, Barend; Wallace, Vesna; Mair, Victor; Xie, Liye; Baines, John; Bridges, Elizabeth; Manning, Joseph; Lockhart, Bruce; Bogaard, Amy; Spencer, Charles

2018-01-01

Do human societies from around the world exhibit similarities in the way that they are structured, and show commonalities in the ways that they have evolved? These are long-standing questions that have proven difficult to answer. To test between competing hypotheses, we constructed a massive repository of historical and archaeological information known as “Seshat: Global History Databank.” We systematically coded data on 414 societies from 30 regions around the world spanning the last 10,000 years. We were able to capture information on 51 variables reflecting nine characteristics of human societies, such as social scale, economy, features of governance, and information systems. Our analyses revealed that these different characteristics show strong relationships with each other and that a single principal component captures around three-quarters of the observed variation. Furthermore, we found that different characteristics of social complexity are highly predictable across different world regions. These results suggest that key aspects of social organization are functionally related and do indeed coevolve in predictable ways. Our findings highlight the power of the sciences and humanities working together to rigorously test hypotheses about general rules that may have shaped human history. PMID:29269395

Variability of tropical cyclone rapid intensification in the North Atlantic and its relationship with climate variations

Science.gov (United States)

Wang, Chunzai; Wang, Xidong; Weisberg, Robert H.; Black, Michael L.

2017-12-01

The paper uses observational data from 1950 to 2014 to investigate rapid intensification (RI) variability of tropical cyclones (TCs) in the North Atlantic and its relationships with large-scale climate variations. RI is defined as a TC intensity increase of at least 15.4 m/s (30 knots) in 24 h. The seasonal RI distribution follows the seasonal TC distribution, with the highest number in September. Although an RI event can occur anywhere over the tropical North Atlantic (TNA), there are three regions of maximum RI occurrence: (1) the western TNA of 12°N-18°N and 60°W-45°W, (2) the Gulf of Mexico and the western Caribbean Sea, and (3) the open ocean southeast and east of Florida. RI events also show a minimum value in the eastern Caribbean Sea north of South America—a place called a hurricane graveyard due to atmospheric divergence and subsidence. On longer time scales, RI displays both interannual and multidecadal variability, but RI does not show a long-term trend due to global warming. The top three climate indices showing high correlations with RI are the June-November ENSO and Atlantic warm pool indices, and the January-March North Atlantic oscillation index. It is found that variabilities of vertical wind shear and TC heat potential are important for TC RI in the hurricane main development region, whereas relative humidity at 500 hPa is the main factor responsible for TC RI in the eastern TNA. However, the large-scale oceanic and atmospheric variables analyzed in this study do not show an important role in TC RI in the Gulf of Mexico and the open ocean southeast and east of Florida. This suggests that other factors such as small-scale changes of oceanic and atmospheric variables or TC internal processes may be responsible for TC RI in these two regions. Additionally, the analyses indicate that large-scale atmospheric and oceanic variables are not critical to TC genesis and formation; however, once a tropical depression forms, large-scale climate

Measure Guideline: Replacing Single-Speed Pool Pumps with Variable Speed Pumps for Energy Savings

Energy Technology Data Exchange (ETDEWEB)

Hunt, A.; Easley, S.

2012-05-01

The report evaluates potential energy savings by replacing traditional single-speed pool pumps with variable speed pool pumps, and provide a basic cost comparison between continued uses of traditional pumps verses new pumps. A simple step-by-step process for inspecting the pool area and installing a new pool pump follows.

Quantification of the spatial variability of rainfall based on a dense network of rain gauges

DEFF Research Database (Denmark)

Pedersen, Lisbeth; Jensen, Niels Einar; Christiansen, Lasse Engbo

2010-01-01

The spatial variability of rainfall within a single Local Area Weather Radar (LAWR) pixel of 500 x 500 m is quantified based on data from two locations. The work was motivated by the need to quantify the variability on this scale in order to provide an estimate of the uncertainty of using a single...... from an earlier campaign in 2003. The fact that the 20072008 dataset was almost four times larger than the original dataset from 2003 motivated this extended study. Two methods were used to describe the variability: the coefficient of variation and the spatial correlation structure of the rainfall......% prediction interval for a given rainfall depth is estimated and can be used to address the uncertainty of using a single rain gauge to represent the rainfall within a 500 x 500 m area. (C) 2009 Elsevier B.V. All rights reserved....

Is there much variation in variation? Revisiting statistics of small area variation in health services research

Directory of Open Access Journals (Sweden)

Ibáñez Berta

2009-04-01

Full Text Available Abstract Background The importance of Small Area Variation Analysis for policy-making contrasts with the scarcity of work on the validity of the statistics used in these studies. Our study aims at 1 determining whether variation in utilization rates between health areas is higher than would be expected by chance, 2 estimating the statistical power of the variation statistics; and 3 evaluating the ability of different statistics to compare the variability among different procedures regardless of their rates. Methods Parametric bootstrap techniques were used to derive the empirical distribution for each statistic under the hypothesis of homogeneity across areas. Non-parametric procedures were used to analyze the empirical distribution for the observed statistics and compare the results in six situations (low/medium/high utilization rates and low/high variability. A small scale simulation study was conducted to assess the capacity of each statistic to discriminate between different scenarios with different degrees of variation. Results Bootstrap techniques proved to be good at quantifying the difference between the null hypothesis and the variation observed in each situation, and to construct reliable tests and confidence intervals for each of the variation statistics analyzed. Although the good performance of Systematic Component of Variation (SCV, Empirical Bayes (EB statistic shows better behaviour under the null hypothesis, it is able to detect variability if present, it is not influenced by the procedure rate and it is best able to discriminate between different degrees of heterogeneity. Conclusion The EB statistics seems to be a good alternative to more conventional statistics used in small-area variation analysis in health service research because of its robustness.

Pluck or Luck: Does Trait Variation or Chance Drive Variation in Lifetime Reproductive Success?

Science.gov (United States)

Snyder, Robin E; Ellner, Stephen P

2018-04-01

While there has been extensive interest in how intraspecific trait variation affects ecological processes, outcomes are highly variable even when individuals are identical: some are lucky, while others are not. Trait variation is therefore important only if it adds substantially to the variability produced by luck. We ask when trait variation has a substantial effect on variability in lifetime reproductive success (LRS), using two approaches: (1) we partition the variation in LRS into contributions from luck and trait variation and (2) we ask what can be inferred about an individual's traits and with what certainty, given their observed LRS. In theoretical stage- and size-structured models and two empirical case studies, we find that luck usually dominates the variance of LRS. Even when individuals differ substantially in ways that affect expected LRS, unless the effects of luck are substantially reduced (e.g., low variability in reproductive life span or annual fecundity), most variance in lifetime outcomes is due to luck, implying that departures from "null" models omitting trait variation will be hard to detect. Luck also obscures the relationship between realized LRS and individual traits. While trait variation may influence the fate of populations, luck often governs the lives of individuals.

Natural Language Search Interfaces: Health Data Needs Single-Field Variable Search.

Science.gov (United States)

Jay, Caroline; Harper, Simon; Dunlop, Ian; Smith, Sam; Sufi, Shoaib; Goble, Carole; Buchan, Iain

2016-01-14

Data discovery, particularly the discovery of key variables and their inter-relationships, is key to secondary data analysis, and in-turn, the evolving field of data science. Interface designers have presumed that their users are domain experts, and so they have provided complex interfaces to support these "experts." Such interfaces hark back to a time when searches needed to be accurate first time as there was a high computational cost associated with each search. Our work is part of a governmental research initiative between the medical and social research funding bodies to improve the use of social data in medical research. The cross-disciplinary nature of data science can make no assumptions regarding the domain expertise of a particular scientist, whose interests may intersect multiple domains. Here we consider the common requirement for scientists to seek archived data for secondary analysis. This has more in common with search needs of the "Google generation" than with their single-domain, single-tool forebears. Our study compares a Google-like interface with traditional ways of searching for noncomplex health data in a data archive. Two user interfaces are evaluated for the same set of tasks in extracting data from surveys stored in the UK Data Archive (UKDA). One interface, Web search, is "Google-like," enabling users to browse, search for, and view metadata about study variables, whereas the other, traditional search, has standard multioption user interface. Using a comprehensive set of tasks with 20 volunteers, we found that the Web search interface met data discovery needs and expectations better than the traditional search. A task × interface repeated measures analysis showed a main effect indicating that answers found through the Web search interface were more likely to be correct (F1,19=37.3, Pnatural language search interfaces for variable search supporting in particular: query reformulation; data browsing; faceted search; surrogates; relevance

Measure Guideline. Replacing Single-Speed Pool Pumps with Variable Speed Pumps for Energy Savings

Energy Technology Data Exchange (ETDEWEB)

Hunt, A. [Building Media and the Building America Retrofit Alliance (BARA), Wilmington, DE (United States); Easley, S. [Building Media and the Building America Retrofit Alliance (BARA), Wilmington, DE (United States)

2012-05-01

This measure guideline evaluates potential energy savings by replacing traditional single-speed pool pumps with variable speed pool pumps, and provides a basic cost comparison between continued uses of traditional pumps verses new pumps. A simple step-by-step process for inspecting the pool area and installing a new pool pump follows.

Graphical user interface for input output characterization of single variable and multivariable highly nonlinear systems

Directory of Open Access Journals (Sweden)

Shahrukh Adnan Khan M. D.

2017-01-01

Full Text Available This paper presents a Graphical User Interface (GUI software utility for the input/output characterization of single variable and multivariable nonlinear systems by obtaining the sinusoidal input describing function (SIDF of the plant. The software utility is developed on MATLAB R2011a environment. The developed GUI holds no restriction on the nonlinearity type, arrangement and system order; provided that output(s of the system is obtainable either though simulation or experiments. An insight to the GUI and its features are presented in this paper and example problems from both single variable and multivariable cases are demonstrated. The formulation of input/output behavior of the system is discussed and the nucleus of the MATLAB command underlying the user interface has been outlined. Some of the industries that would benefit from this software utility includes but not limited to aerospace, defense technology, robotics and automotive.

Response Variability in Commercial MOSFET SEE Qualification

International Nuclear Information System (INIS)

George, J. S.; Clymer, D. A.; Turflinger, T. L.; Mason, L. W.; Stone, S.

2016-01-01

Single-event effects (SEE) evaluation of five different part types of next generation, commercial trench MOSFETs indicates large part-to-part variation in determining a safe operating area (SOA) for drain-source voltage (V_D_S) following a test campaign that exposed >50 samples per part type to heavy ions. These results suggest a determination of a SOA using small sample sizes may fail to capture the full extent of the part-to-part variability. An example method is discussed for establishing a Safe Operating Area using a one-sided statistical tolerance limit based on the number of test samples. Finally, burn-in is shown to be a critical factor in reducing part-to-part variation in part response. Implications for radiation qualification requirements are also explored.

Single cell wound generates electric current circuit and cell membrane potential variations that requires calcium influx.

Science.gov (United States)

Luxardi, Guillaume; Reid, Brian; Maillard, Pauline; Zhao, Min

2014-07-24

Breaching of the cell membrane is one of the earliest and most common causes of cell injury, tissue damage, and disease. If the compromise in cell membrane is not repaired quickly, irreversible cell damage, cell death and defective organ functions will result. It is therefore fundamentally important to efficiently repair damage to the cell membrane. While the molecular aspects of single cell wound healing are starting to be deciphered, its bio-physical counterpart has been poorly investigated. Using Xenopus laevis oocytes as a model for single cell wound healing, we describe the temporal and spatial dynamics of the wound electric current circuitry and the temporal dynamics of cell membrane potential variation. In addition, we show the role of calcium influx in controlling electric current circuitry and cell membrane potential variations. (i) Upon wounding a single cell: an inward electric current appears at the wound center while an outward electric current is observed at its sides, illustrating the wound electric current circuitry; the cell membrane is depolarized; calcium flows into the cell. (ii) During cell membrane re-sealing: the wound center current density is maintained for a few minutes before decreasing; the cell membrane gradually re-polarizes; calcium flow into the cell drops. (iii) In conclusion, calcium influx is required for the formation and maintenance of the wound electric current circuitry, for cell membrane re-polarization and for wound healing.

Controlling variation in the comet assay

Directory of Open Access Journals (Sweden)

Andrew Richard Collins

2014-10-01

Full Text Available Variability of the comet assay is a serious issue, whether it occurs from experiment to experiment in the same laboratory, or between different laboratories analysing identical samples. Do we have to live with high variability, just because the comet assay is a biological assay rather than analytical chemistry? Numerous attempts have been made to limit variability by standardising the assay protocol, and the critical steps in the assay have been identified; agarose concentration, duration of alkaline incubation, and electrophoresis conditions (time, temperature and voltage gradient are particularly important. Even when these are controlled, variation seems to be inevitable. It is helpful to include in experiments reference standards, i.e. cells with a known amount of specific damage to the DNA. They can be aliquots frozen from a single large batch of cells, either untreated (negative controls or treated with, for example, H2O2 or X-rays to induce strand breaks (positive control for the basic assay, or photosensitiser plus light to oxidise guanine (positive control for Fpg- or OGG1-sensitive sites. Reference standards are especially valuable when performing a series of experiments over a long period - for example, analysing samples of white blood cells from a large human biomonitoring trial - to check that the assay is performing consistently, and to identify anomalous results necessitating a repeat experiment. The reference values of tail intensity can also be used to iron out small variations occurring from day to day. We present examples of the use of reference standards in human trials, both within one laboratory and between different laboratories, and describe procedures that can be used to control variation.

The Cluster Variation Method: A Primer for Neuroscientists.

Science.gov (United States)

Maren, Alianna J

2016-09-30

Effective Brain-Computer Interfaces (BCIs) require that the time-varying activation patterns of 2-D neural ensembles be modelled. The cluster variation method (CVM) offers a means for the characterization of 2-D local pattern distributions. This paper provides neuroscientists and BCI researchers with a CVM tutorial that will help them to understand how the CVM statistical thermodynamics formulation can model 2-D pattern distributions expressing structural and functional dynamics in the brain. The premise is that local-in-time free energy minimization works alongside neural connectivity adaptation, supporting the development and stabilization of consistent stimulus-specific responsive activation patterns. The equilibrium distribution of local patterns, or configuration variables , is defined in terms of a single interaction enthalpy parameter ( h ) for the case of an equiprobable distribution of bistate (neural/neural ensemble) units. Thus, either one enthalpy parameter (or two, for the case of non-equiprobable distribution) yields equilibrium configuration variable values. Modeling 2-D neural activation distribution patterns with the representational layer of a computational engine, we can thus correlate variational free energy minimization with specific configuration variable distributions. The CVM triplet configuration variables also map well to the notion of a M = 3 functional motif. This paper addresses the special case of an equiprobable unit distribution, for which an analytic solution can be found.

The Cluster Variation Method: A Primer for Neuroscientists

Directory of Open Access Journals (Sweden)

Alianna J. Maren

2016-09-01

Full Text Available Effective Brain–Computer Interfaces (BCIs require that the time-varying activation patterns of 2-D neural ensembles be modelled. The cluster variation method (CVM offers a means for the characterization of 2-D local pattern distributions. This paper provides neuroscientists and BCI researchers with a CVM tutorial that will help them to understand how the CVM statistical thermodynamics formulation can model 2-D pattern distributions expressing structural and functional dynamics in the brain. The premise is that local-in-time free energy minimization works alongside neural connectivity adaptation, supporting the development and stabilization of consistent stimulus-specific responsive activation patterns. The equilibrium distribution of local patterns, or configuration variables, is defined in terms of a single interaction enthalpy parameter (h for the case of an equiprobable distribution of bistate (neural/neural ensemble units. Thus, either one enthalpy parameter (or two, for the case of non-equiprobable distribution yields equilibrium configuration variable values. Modeling 2-D neural activation distribution patterns with the representational layer of a computational engine, we can thus correlate variational free energy minimization with specific configuration variable distributions. The CVM triplet configuration variables also map well to the notion of a M = 3 functional motif. This paper addresses the special case of an equiprobable unit distribution, for which an analytic solution can be found.

Targeting nanodisks via a single chain variable antibody - Apolipoprotein chimera

International Nuclear Information System (INIS)

Iovannisci, David M.; Beckstead, Jennifer A.; Ryan, Robert O.

2009-01-01

Nanodisks (ND) are nanometer scale complexes of phospholipid and apolipoprotein that have been shown to function as drug delivery vehicles. ND harboring significant quantities of the antifungal agent, amphotericin B, or the bioactive isoprenoid, all trans retinoic acid, have been generated and characterized. As currently formulated, ND possess limited targeting capability. In this study, we constructed a single chain variable antibody (scFv).apolipoprotein chimera and assessed the ability of this fusion protein to form ND and recognize the antigen to which the scFv is directed. Data obtained revealed that α-vimentin scFv.apolipoprotein A-I is functional in ND formation and antigen recognition, opening the door to the use of such chimeras in targeting drug-enriched ND to specific tissues.

The forced sound transmission of finite single leaf walls using a variational technique.

Science.gov (United States)

Brunskog, Jonas

2012-09-01

The single wall is the simplest element of concern in building acoustics, but there still remain some open questions regarding the sound insulation of this simple case. The two main reasons for this are the effects on the excitation and sound radiation of the wall when it has a finite size, and the fact that the wave field in the wall is consisting of two types of waves, namely forced waves due to the exciting acoustic field, and free bending waves due to reflections in the boundary. The aim of the present paper is to derive simple analytical formulas for the forced part of the airborne sound insulation of a single homogeneous wall of finite size, using a variational technique based on the integral-differential equation of the fluid loaded wall. The so derived formulas are valid in the entire audible frequency range. The results are compared with full numerical calculations, measurements and alternative theory, with reasonable agreement.

The forced sound transmission of finite single leaf walls using a variational technique

DEFF Research Database (Denmark)

Brunskog, Jonas

2012-01-01

The single wall is the simplest element of concern in building acoustics, but there still remain some open questions regarding the sound insulation of this simple case. The two main reasons for this are the effects on the excitation and sound radiation of the wall when it has a finite size......, and the fact that the wave field in the wall is consisting of two types of waves, namely forced waves due to the exciting acoustic field, and free bending waves due to reflections in the boundary. The aim of the present paper is to derive simple analytical formulas for the forced part of the airborne sound...... insulation of a single homogeneous wall of finite size, using a variational technique based on the integral-differential equation of the fluid loaded wall. The so derived formulas are valid in the entire audible frequency range. The results are compared with full numerical calculations, measurements...

Variational segmentation problems using prior knowledge in imaging and vision

DEFF Research Database (Denmark)

Fundana, Ketut

This dissertation addresses variational formulation of segmentation problems using prior knowledge. Variational models are among the most successful approaches for solving many Computer Vision and Image Processing problems. The models aim at finding the solution to a given energy functional defined......, prior knowledge is needed to obtain the desired solution. The introduction of shape priors in particular, has proven to be an effective way to segment objects of interests. Firstly, we propose a prior-based variational segmentation model to segment objects of interest in image sequences, that can deal....... Many objects have high variability in shape and orientation. This often leads to unsatisfactory results, when using a segmentation model with single shape template. One way to solve this is by using more sophisticated shape models. We propose to incorporate shape priors from a shape sub...

Latitudinal variation in cranial dimorphism in Macaca fascicularis.

Science.gov (United States)

Schillaci, Michael A

2010-02-01

This study examines latitudinal and insular variation in the expression of sexual dimorphism in cranial length in three geographical groupings of Macaca fascicularis. In addition, the relationship between cranial length dimorphism (CLD) and sex-specific size is examined. The results of the study identified a significant relationship between CLD and latitude for only one of the three geographic groupings. Sex-specific relationships between cranial length and CLD were detected. The pattern of these relationships varied by geographic grouping. This study is important because it demonstrates that despite very similar levels of CLD in a single primate species, there exists important geographic variability in the correlates of that dimorphism. I suggest that geographically varying ecological factors may influence sex-specific natural selection and the intensity of CLD in M. fascicularis. Gaining a better understanding of this geographical variability will require that future research examines morphological variation, including CLD, within its corresponding ecological and social contexts. Such research should be comparative, and incorporate multiple geographically separated populations with disparate environmental settings.

Cycle-to-cycle variation analysis of in-cylinder flow in a gasoline engine with variable valve lift

Science.gov (United States)

Liu, Daming; Wang, Tianyou; Jia, Ming; Wang, Gangde

2012-09-01

In spark ignition engines, cycle-to-cycle variation (CCV) limits the expansion of the operating range because it induces the load variations and the occurrence of misfire and/or knock. Variable valve actuation (VVA) or variable valve lift (VVL) has been widely used in SI engines to improve the volumetric efficiency or to reduce the pumping losses. It is necessary to investigate the CCV of in-cylinder gas motion and mixing processes in SI engines with VVA/VVL system. This study is aimed to analyze the CCV of the tumble flow in a gasoline direct injection (GDI) engine when VVL is employed. Cycle-resolved digital particle image velocimetry (CRD-PIV) data were acquired for the in-cylinder flow field of a motored four-stroke multi-valve GDI optical engine. The CCV of in-cylinder gas motion with a series of valve profiles and different maximum valve lift (MVL) was analyzed, including cyclic variation characteristics of bulk flow (tumble centre and tumble ratio), large- and small-scale fluctuation, total kinetic energy, and circulation. The results show that the CCV of the in-cylinder flow is increased with reduced MVL. With lower MVLs, stable tumble flow cannot be formed in the cylinder, and the ensemble-averaged tumble ratio decreases to zero before the end of the compression stroke due to violent variation. In addition, the evolution of the circulation shows larger variation with lower MVLs that indicates the `spin' of the small-scale eddy in the flow field presents violent fluctuation from one cycle to another, especially at the end of the compression stroke. Moreover, the analyze of the kinetic energy indicates the total energy of the flow field with lower MVLs increases significantly comparing with higher MVL conditions due to the intake flow jet at the intake valve seat in the intake stroke. However, the CCV of the in-cylinder flow becomes more violent under lower MVL conditions, especially for the low-frequency fluctuation kinetic energy. Thus, present strong

Does team lifting increase the variability in peak lumbar compression in ironworkers?

Science.gov (United States)

Faber, Gert; Visser, Steven; van der Molen, Henk F; Kuijer, P Paul F M; Hoozemans, Marco J M; Van Dieën, Jaap H; Frings-Dresen, Monique H W

2012-01-01

Ironworkers frequently perform heavy lifting tasks in teams of two or four workers. Team lifting could potentially lead to a higher variation in peak lumbar compression forces than lifts performed by one worker, resulting in higher maximal peak lumbar compression forces. This study compared single-worker lifts (25-kg, iron bar) to two-worker lifts (50-kg, two iron bars) and to four-worker lifts (100-kg, iron lattice). Inverse dynamics was used to calculate peak lumbar compression forces. To assess the variability in peak lumbar loading, all three lifting tasks were performed six times. Results showed that the variability in peak lumbar loading was somewhat higher in the team lifts compared to the single-worker lifts. However, despite this increased variability, team lifts did not result in larger maximum peak lumbar compression forces. Therefore, it was concluded that, from a biomechanical point of view, team lifting does not result in an additional risk for low back complaints in ironworkers.

Phylogeographic variation in recombination rates within a global clone of Methicillin-Resistant Staphylococcus aureus (MRSA)

DEFF Research Database (Denmark)

Castillo-Ramirez, Santiago; Corander, Jukka; Marttinen, Pekka

2012-01-01

by employing a recently developed Bayesian approach, BRATNextGen, for detecting recombination on an expanded NGS dataset of the globally disseminated methicillin-resistant Staphylococcus aureus (MRSA) clone ST239. RESULTS: The data confirm strong geographical clustering at continental, national and city scales...... that the rapid global dissemination of a single pathogenic bacterial clone results in local variation in measured recombination rates. Possible explanatory variables include the size and time since emergence of each defined sub-population (as determined by the sampling frame), variation in transmission dynamics...

HOW NORMAL IS VARIABLE, OR HOW VARIABLE IS NORMAL

NARCIS (Netherlands)

TOUWEN, BCL

Variability is an important property of the central nervous system, and it shows characteristic changes during infancy and childhood. The large amount of variations in the performance of sensomotor functions in infancy is called indiscriminate or primary variability. During toddling age the child

The Parabolic Variational Inequalities for Variably Saturated Water Flow in Heterogeneous Fracture Networks

Directory of Open Access Journals (Sweden)

Zuyang Ye

2018-01-01

Full Text Available Fractures are ubiquitous in geological formations and have a substantial influence on water seepage flow in unsaturated fractured rocks. While the matrix permeability is small enough to be ignored during the partially saturated flow process, water seepage in heterogeneous fracture systems may occur in a non-volume-average manner as distinguished from a macroscale continuum model. This paper presents a systematic numerical method which aims to provide a better understanding of the effect of fracture distribution on the water seepage behavior in such media. Based on the partial differential equation (PDE formulations with a Signorini-type complementary condition on the variably saturated water flow in heterogeneous fracture networks, the equivalent parabolic variational inequality (PVI formulations are proposed and the related numerical algorithm in the context of the finite element scheme is established. With the application to the continuum porous media, the results of the numerical simulation for one-dimensional infiltration fracture are compared to the analytical solutions and good agreements are obtained. From the application to intricate fracture systems, it is found that water seepage flow can move rapidly along preferential pathways in a nonuniform fashion and the variably saturated seepage behavior is intimately related to the geometrical characteristics orientation of fractures.

Accidental cloning of a single-photon qubit in two-channel continuous-variable quantum teleportation

International Nuclear Information System (INIS)

Ide, Toshiki; Hofmann, Holger F.

2007-01-01

The information encoded in the polarization of a single photon can be transferred to a remote location by two-channel continuous-variable quantum teleportation. However, the finite entanglement used in the teleportation causes random changes in photon number. If more than one photon appears in the output, the continuous-variable teleportation accidentally produces clones of the original input photon. In this paper, we derive the polarization statistics of the N-photon output components and show that they can be decomposed into an optimal cloning term and completely unpolarized noise. We find that the accidental cloning of the input photon is nearly optimal at experimentally feasible squeezing levels, indicating that the loss of polarization information is partially compensated by the availability of clones

Single-Cell-Based Platform for Copy Number Variation Profiling through Digital Counting of Amplified Genomic DNA Fragments.

Science.gov (United States)

Li, Chunmei; Yu, Zhilong; Fu, Yusi; Pang, Yuhong; Huang, Yanyi

2017-04-26

We develop a novel single-cell-based platform through digital counting of amplified genomic DNA fragments, named multifraction amplification (mfA), to detect the copy number variations (CNVs) in a single cell. Amplification is required to acquire genomic information from a single cell, while introducing unavoidable bias. Unlike prevalent methods that directly infer CNV profiles from the pattern of sequencing depth, our mfA platform denatures and separates the DNA molecules from a single cell into multiple fractions of a reaction mix before amplification. By examining the sequencing result of each fraction for a specific fragment and applying a segment-merge maximum likelihood algorithm to the calculation of copy number, we digitize the sequencing-depth-based CNV identification and thus provide a method that is less sensitive to the amplification bias. In this paper, we demonstrate a mfA platform through multiple displacement amplification (MDA) chemistry. When performing the mfA platform, the noise of MDA is reduced; therefore, the resolution of single-cell CNV identification can be improved to 100 kb. We can also determine the genomic region free of allelic drop-out with mfA platform, which is impossible for conventional single-cell amplification methods.

An Ensemble Three-Dimensional Constrained Variational Analysis Method to Derive Large-Scale Forcing Data for Single-Column Models

Science.gov (United States)

Tang, Shuaiqi

Atmospheric vertical velocities and advective tendencies are essential as large-scale forcing data to drive single-column models (SCM), cloud-resolving models (CRM) and large-eddy simulations (LES). They cannot be directly measured or easily calculated with great accuracy from field measurements. In the Atmospheric Radiation Measurement (ARM) program, a constrained variational algorithm (1DCVA) has been used to derive large-scale forcing data over a sounding network domain with the aid of flux measurements at the surface and top of the atmosphere (TOA). We extend the 1DCVA algorithm into three dimensions (3DCVA) along with other improvements to calculate gridded large-scale forcing data. We also introduce an ensemble framework using different background data, error covariance matrices and constraint variables to quantify the uncertainties of the large-scale forcing data. The results of sensitivity study show that the derived forcing data and SCM simulated clouds are more sensitive to the background data than to the error covariance matrices and constraint variables, while horizontal moisture advection has relatively large sensitivities to the precipitation, the dominate constraint variable. Using a mid-latitude cyclone case study in March 3rd, 2000 at the ARM Southern Great Plains (SGP) site, we investigate the spatial distribution of diabatic heating sources (Q1) and moisture sinks (Q2), and show that they are consistent with the satellite clouds and intuitive structure of the mid-latitude cyclone. We also evaluate the Q1 and Q2 in analysis/reanalysis, finding that the regional analysis/reanalysis all tend to underestimate the sub-grid scale upward transport of moist static energy in the lower troposphere. With the uncertainties from large-scale forcing data and observation specified, we compare SCM results and observations and find that models have large biases on cloud properties which could not be fully explained by the uncertainty from the large-scale forcing

Maximum generation power evaluation of variable frequency offshore wind farms when connected to a single power converter

Energy Technology Data Exchange (ETDEWEB)

Gomis-Bellmunt, Oriol; Sumper, Andreas [Centre d' Innovacio Tecnologica en Convertidors Estatics i Accionaments (CITCEA-UPC), Universitat Politecnica de Catalunya UPC, Av. Diagonal, 647, Pl. 2, 08028 Barcelona (Spain); IREC Catalonia Institute for Energy Research, Barcelona (Spain); Junyent-Ferre, Adria; Galceran-Arellano, Samuel [Centre d' Innovacio Tecnologica en Convertidors Estatics i Accionaments (CITCEA-UPC), Universitat Politecnica de Catalunya UPC, Av. Diagonal, 647, Pl. 2, 08028 Barcelona (Spain)

2010-10-15

The paper deals with the evaluation of power generated by variable and constant frequency offshore wind farms connected to a single large power converter. A methodology to analyze different wind speed scenarios and system electrical frequencies is presented and applied to a case study, where it is shown that the variable frequency wind farm concept (VF) with a single power converter obtains 92% of the total available power, obtained with individual power converters in each wind turbine (PC). The PC scheme needs multiple power converters implying drawbacks in terms of cost, maintenance and reliability. The VF scheme is also compared to a constant frequency scheme CF, and it is shown that a significant power increase of more than 20% can be obtained with VF. The case study considers a wind farm composed of four wind turbines based on synchronous generators. (author)

THE OPTICAL VARIABILITY OF SDSS QUASARS FROM MULTI-EPOCH SPECTROSCOPY. II. COLOR VARIATION

Energy Technology Data Exchange (ETDEWEB)

Guo, Hengxiao; Gu, Minfeng, E-mail: hxguo@shao.ac.cn, E-mail: gumf@shao.ac.cn [Key Laboratory for Research in Galaxies and Cosmology, Shanghai Astronomical Observatory, Chinese Academy of Sciences, 80 Nandan Road, Shanghai 200030 (China)

2016-05-01

We investigated the optical/ultraviolet (UV) color variations for a sample of 2169 quasars based on multi-epoch spectroscopy in the Sloan Digital Sky Survey data releases seven (DR7) and nine (DR9). To correct the systematic difference between DR7 and DR9 due to the different instrumental setup, we produced a correction spectrum by using a sample of F-stars observed in both DR7 and DR9. The correction spectrum was then applied to quasars when comparing the spectra of DR7 with DR9. In each object, the color variation was explored by comparing the spectral index of the continuum power-law fit on the brightest spectrum with the faintest one, and also by the shape of their difference spectrum. In 1876 quasars with consistent color variations from two methods, we found that most sources (1755, ∼94%) show the bluer-when-brighter (BWB) trend, and the redder-when-brighter (RWB) trend is detected in only 121 objects (∼6%). The common BWB trend is supported by the composite spectrum constructed from bright spectra, which is bluer than that from faint spectra, and also by the blue composite difference spectrum. The correction spectrum is proven to be highly reliable by comparing the composite spectrum from corrected DR9 and original DR7 spectra. Assuming that the optical/UV variability is triggered by fluctuations, the RWB trend can likely be explained if the fluctuations occur first in the outer disk region, and the inner disk region has not yet fully responded when the fluctuations are being propagated inward. In contrast, the common BWB trend implies that the fluctuations likely more often happen first in the inner disk region.

Variations in screening outcome among pairs of screening radiologists at non-blinded double reading of screening mammograms: a population-based study

NARCIS (Netherlands)

Klompenhouwer, E. G.; Duijm, L. E. M.; Voogd, A. C.; den Heeten, G. J.; Nederend, J.; Jansen, F. H.; Broeders, M. J. M.

2014-01-01

Substantial inter-observer variability in screening mammography interpretation has been reported at single reading. However, screening results of pairs of screening radiologists have not yet been published. We determined variations in screening performances among pairs of screening radiologists at

Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics

Directory of Open Access Journals (Sweden)

Ayman Abunimer

2014-03-01

Full Text Available Cardiovascular diseases are a large contributor to causes of early death in developed countries. Some of these conditions, such as sudden cardiac death and atrial fibrillation, stem from arrhythmias—a spectrum of conditions with abnormal electrical activity in the heart. Genome-wide association studies can identify single nucleotide variations (SNVs that may predispose individuals to developing acquired forms of arrhythmias. Through manual curation of published genome-wide association studies, we have collected a comprehensive list of 75 SNVs associated with cardiac arrhythmias. Ten of the SNVs result in amino acid changes and can be used in proteomic-based detection methods. In an effort to identify additional non-synonymous mutations that affect the proteome, we analyzed the post-translational modification S-nitrosylation, which is known to affect cardiac arrhythmias. We identified loss of seven known S-nitrosylation sites due to non-synonymous single nucleotide variations (nsSNVs. For predicted nitrosylation sites we found 1429 proteins where the sites are modified due to nsSNV. Analysis of the predicted S-nitrosylation dataset for over- or under-representation (compared to the complete human proteome of pathways and functional elements shows significant statistical over-representation of the blood coagulation pathway. Gene Ontology (GO analysis displays statistically over-represented terms related to muscle contraction, receptor activity, motor activity, cystoskeleton components, and microtubule activity. Through the genomic and proteomic context of SNVs and S-nitrosylation sites presented in this study, researchers can look for variation that can predispose individuals to cardiac arrhythmias. Such attempts to elucidate mechanisms of arrhythmia thereby add yet another useful parameter in predicting susceptibility for cardiac diseases.

A SEARCH FOR PHOTOMETRIC VARIABILITY IN L- AND T-TYPE BROWN DWARF ATMOSPHERES

International Nuclear Information System (INIS)

Khandrika, Harish; Burgasser, Adam J.; Melis, Carl; Luk, Christopher; Bowsher, Emily; Swift, Brandon

2013-01-01

Using the Gemini infrared camera on the 3 m Shane telescope at Lick Observatory, we have searched for broadband J and K' photometric variability for a sample of 15 L- and T-type brown dwarfs, including 7 suspected spectral binaries. Four of the dwarfs—2MASS J0939–2448, 2MASS J1416+1348A, 2MASS J1711+2232, and 2MASS J2139+0220—exhibit statistically significant variations over timescales ranging from ∼0.5 hr to 6 days. Our detection of variability in 2MASS J2139+0220 confirms that reported by Radigan et al., and periodogram and phase dispersion minimization analysis also confirms a variability period of approximately 7.6 ± 0.2 hr. Remarkably, two of the four variables are known or candidate binary systems, including 2MASS J2139+0220, for which we find only marginal evidence of radial velocity variation over the course of a year. This result suggests that some spectral binary candidates may appear as such due to the blending of cloudy and non-cloudy regions in a single ''patchy'' atmosphere. Our results are consistent with an overall variability fraction of 35% ± 5%, with no clear evidence of greater variability among brown dwarfs at the L dwarf/T dwarf transition.

Cycle-to-cycle variation analysis of in-cylinder flow in a gasoline engine with variable valve lift

Energy Technology Data Exchange (ETDEWEB)

Liu, Daming; Wang, Tianyou; Wang, Gangde [Tianjin University, State Key Laboratory of Engines, Tianjin (China); Jia, Ming [Dalian University of Technology, School of Energy and Power Engineering, Dalian (China)

2012-09-15

In spark ignition engines, cycle-to-cycle variation (CCV) limits the expansion of the operating range because it induces the load variations and the occurrence of misfire and/or knock. Variable valve actuation (VVA) or variable valve lift (VVL) has been widely used in SI engines to improve the volumetric efficiency or to reduce the pumping losses. It is necessary to investigate the CCV of in-cylinder gas motion and mixing processes in SI engines with VVA/VVL system. This study is aimed to analyze the CCV of the tumble flow in a gasoline direct injection (GDI) engine when VVL is employed. Cycle-resolved digital particle image velocimetry (CRD-PIV) data were acquired for the in-cylinder flow field of a motored four-stroke multi-valve GDI optical engine. The CCV of in-cylinder gas motion with a series of valve profiles and different maximum valve lift (MVL) was analyzed, including cyclic variation characteristics of bulk flow (tumble centre and tumble ratio), large- and small-scale fluctuation, total kinetic energy, and circulation. The results show that the CCV of the in-cylinder flow is increased with reduced MVL. With lower MVLs, stable tumble flow cannot be formed in the cylinder, and the ensemble-averaged tumble ratio decreases to zero before the end of the compression stroke due to violent variation. In addition, the evolution of the circulation shows larger variation with lower MVLs that indicates the 'spin' of the small-scale eddy in the flow field presents violent fluctuation from one cycle to another, especially at the end of the compression stroke. Moreover, the analyze of the kinetic energy indicates the total energy of the flow field with lower MVLs increases significantly comparing with higher MVL conditions due to the intake flow jet at the intake valve seat in the intake stroke. However, the CCV of the in-cylinder flow becomes more violent under lower MVL conditions, especially for the low-frequency fluctuation kinetic energy. Thus, present

Natural Language Search Interfaces: Health Data Needs Single-Field Variable Search

Science.gov (United States)

Smith, Sam; Sufi, Shoaib; Goble, Carole; Buchan, Iain

2016-01-01

Background Data discovery, particularly the discovery of key variables and their inter-relationships, is key to secondary data analysis, and in-turn, the evolving field of data science. Interface designers have presumed that their users are domain experts, and so they have provided complex interfaces to support these “experts.” Such interfaces hark back to a time when searches needed to be accurate first time as there was a high computational cost associated with each search. Our work is part of a governmental research initiative between the medical and social research funding bodies to improve the use of social data in medical research. Objective The cross-disciplinary nature of data science can make no assumptions regarding the domain expertise of a particular scientist, whose interests may intersect multiple domains. Here we consider the common requirement for scientists to seek archived data for secondary analysis. This has more in common with search needs of the “Google generation” than with their single-domain, single-tool forebears. Our study compares a Google-like interface with traditional ways of searching for noncomplex health data in a data archive. Methods Two user interfaces are evaluated for the same set of tasks in extracting data from surveys stored in the UK Data Archive (UKDA). One interface, Web search, is “Google-like,” enabling users to browse, search for, and view metadata about study variables, whereas the other, traditional search, has standard multioption user interface. Results Using a comprehensive set of tasks with 20 volunteers, we found that the Web search interface met data discovery needs and expectations better than the traditional search. A task × interface repeated measures analysis showed a main effect indicating that answers found through the Web search interface were more likely to be correct (F 1,19=37.3, Peffect of task (F 3,57=6.3, Pinterface (F 1,19=18.0, Peffect of task (F 2,38=4.1, P=.025, Greenhouse

Seasonal variation in sports participation.

Science.gov (United States)

Schüttoff, Ute; Pawlowski, Tim

2018-02-01

This study explores indicators describing socio-demographics, sports participation characteristics and motives which are associated with variation in sports participation across seasons. Data were drawn from the German Socio-Economic Panel which contains detailed information on the sports behaviour of adults in Germany. Overall, two different measures of seasonal variation are developed and used as dependent variables in our regression models. The first variable measures the coefficient of (seasonal) variation in sport-related energy expenditure per week. The second variable measures whether activity drops below the threshold as defined by the World Health Organization (WHO). Results suggest that the organisational setting, the intensity and number of sports practised, and the motive for participation are strongly correlated with the variation measures used. For example, both, participation in a sports club and a commercial facility, are associated with reduced seasonal variation and a significantly higher probability of participating at a volume above the WHO threshold across all seasons. These findings give some impetus for policymaking and the planning of sports programmes as well as future research directions.

Variations in Carabidae assemblages across the farmland habitats in relation to selected environmental variables including soil properties

Directory of Open Access Journals (Sweden)

Beáta Baranová

2018-03-01

Full Text Available The variations in ground beetles (Coleoptera: Carabidae assemblages across the three types of farmland habitats, arable land, meadows and woody vegetation were studied in relation to vegetation cover structure, intensity of agrotechnical interventions and selected soil properties. Material was pitfall trapped in 2010 and 2011 on twelve sites of the agricultural landscape in the Prešov town and its near vicinity, Eastern Slovakia. A total of 14,763 ground beetle individuals were entrapped. Material collection resulted into 92 Carabidae species, with the following six species dominating: Poecilus cupreus, Pterostichus melanarius, Pseudoophonus rufipes, Brachinus crepitans, Anchomenus dorsalis and Poecilus versicolor. Studied habitats differed significantly in the number of entrapped individuals, activity abundance as well as representation of the carabids according to their habitat preferences and ability to fly. However, no significant distinction was observed in the diversity, evenness neither dominance. The most significant environmental variables affecting Carabidae assemblages species variability were soil moisture and herb layer 0-20 cm. Another best variables selected by the forward selection were intensity of agrotechnical interventions, humus content and shrub vegetation. The other from selected soil properties seem to have just secondary meaning for the adult carabids. Environmental variables have the strongest effect on the habitat specialists, whereas ground beetles without special requirements to the habitat quality seem to be affected by the studied environmental variables just little.

Amplitude variability over trials in hemodynamic responses in adolescents with ADHD

DEFF Research Database (Denmark)

Sørensen, L; Eichele, T; van Wageningen, H

2016-01-01

variable response times. In this study, we asked whether ADHD IIV in reaction time on a commonly-used test of attention might be related to variation in hemodynamic responses (HRs) observed trial-to-trial. Based on previous studies linking IIV to regions within the "default mode" network (DMN), we...... predicted that adolescents with ADHD would have higher HR variability in the DMN compared with controls, and this in turn would be related to behavioral IIV. We also explored the influence of social anxiety on HR variability in ADHD as means to test whether higher arousal associated with high trait anxiety...... would affect the neural abnormalities. We assessed single-trial variability of HRs, estimated from fMRI event-related responses elicited during an auditory oddball paradigm in adolescents with ADHD and healthy controls (11-18 years old; N = 46). Adolescents with ADHD had higher HR variability compared...

Variations of extreme rainfall in space and time

DEFF Research Database (Denmark)

Gregersen, Ida Bülow; Madsen, H.; Rosbjerg, Dan

2012-01-01

variation, whereas annual variations are related to changes in the average Danish summer precipitation, the average Danish summer temperature and the East Atlantic pattern. The spatio-temporal Poisson regression model was found to be a helpful tool when comparing the internal importance of these variables......In the ongoing climate change discussion, methods for identification of variability governed by climate change are important tools. The magnitude of variables that can describe this variability should be compared with magnitudes of variables describing variability in a stationary setting....... This study focuses on variations of extreme rainfall events, observed at 70 different locations in Denmark over a period of 31 years. The aim is to identify and compare variables, both spatially and temporally, which can explain different parts of the variability in this data set. Assuming that the number...

Assessing the Impact of Forest Change and Climate Variability on Dry Season Runoff by an Improved Single Watershed Approach: A Comparative Study in Two Large Watersheds, China

Directory of Open Access Journals (Sweden)

Yiping Hou

2018-01-01

Full Text Available Extensive studies on hydrological responses to forest change have been published for centuries, yet partitioning the hydrological effects of forest change, climate variability and other factors in a large watershed remains a challenge. In this study, we developed a single watershed approach combining the modified double mass curve (MDMC and the time series multivariate autoregressive integrated moving average model (ARIMAX to separate the impact of forest change, climate variability and other factors on dry season runoff variation in two large watersheds in China. The Zagunao watershed was examined for the deforestation effect, while the Meijiang watershed was examined to study the hydrological impact of reforestation. The key findings are: (1 both deforestation and reforestation led to significant reductions in dry season runoff, while climate variability yielded positive effects in the studied watersheds; (2 the hydrological response to forest change varied over time due to changes in soil infiltration and evapotranspiration after vegetation regeneration; (3 changes of subalpine natural forests produced greater impact on dry season runoff than alteration of planted forests. These findings are beneficial to water resource and forest management under climate change and highlight a better planning of forest operations and management incorporated trade-off between carbon and water in different forests.

VCS: Tool for Visualizing Copy Number Variation and Single Nucleotide Polymorphism

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HyoYoung Kim

2014-12-01

Full Text Available Copy number variation (CNV or single nucleotide phlyorphism (SNP is useful genetic resource to aid in understanding complex phenotypes or deseases susceptibility. Although thousands of CNVs and SNPs are currently avaliable in the public databases, they are somewhat difficult to use for analyses without visualization tools. We developed a web-based tool called the VCS (visualization of CNV or SNP to visualize the CNV or SNP detected. The VCS tool can assist to easily interpret a biological meaning from the numerical value of CNV and SNP. The VCS provides six visualization tools: i the enrichment of genome contents in CNV; ii the physical distribution of CNV or SNP on chromosomes; iii the distribution of log2 ratio of CNVs with criteria of interested; iv the number of CNV or SNP per binning unit; v the distribution of homozygosity of SNP genotype; and vi cytomap of genes within CNV or SNP region.

Hardness variability in commercial technologies

International Nuclear Information System (INIS)

Shaneyfelt, M.R.; Winokur, P.S.; Meisenheimer, T.L.; Sexton, F.W.; Roeske, S.B.; Knoll, M.G.

1994-01-01

The radiation hardness of commercial Floating Gate 256K E 2 PROMs from a single diffusion lot was observed to vary between 5 to 25 krad(Si) when irradiated at a low dose rate of 64 mrad(Si)/s. Additional variations in E 2 PROM hardness were found to depend on bias condition and failure mode (i.e., inability to read or write the memory), as well as the foundry at which the part was manufactured. This variability is related to system requirements, and it is shown that hardness level and variability affect the allowable mode of operation for E 2 PROMs in space applications. The radiation hardness of commercial 1-Mbit CMOS SRAMs from Micron, Hitachi, and Sony irradiated at 147 rad(Si)/s was approximately 12, 13, and 19 krad(Si), respectively. These failure levels appear to be related to increases in leakage current during irradiation. Hardness of SRAMs from each manufacturer varied by less than 20%, but differences between manufacturers are significant. The Qualified Manufacturer's List approach to radiation hardness assurance is suggested as a way to reduce variability and to improve the hardness level of commercial technologies

What is significant about a single nursing session? An exploratory study.

Science.gov (United States)

Miller, Elizabeth M

2017-09-10

Researchers and clinicians specializing in breastfeeding often rely on measuring one nursing session to characterize the breastfeeding relationship. However, less is known about the descriptive or statistically predictive characteristics of one nursing session. The purposes of this study are twofold: (1) to explore the relationships between variables in a single nursing session; and (2) to study the association between variables in a single nursing session and infant length-for-age (LAZ) and weight-for-age (WAZ). In 63 nursing mother-infant pairs in the United States, anthropometric measurement and observation of a single nursing session revealed six nursing session variables: fore milk fat percent, hind milk fat percent, infant milk intake, duration of session, time since last session, and time of day of session. A principle factor analysis, undertaken to explore latent variables underlying the six session variables, revealed two factors: (1) loaded highly on fore and hind milk fat percentage, reflecting the overall fat percent in a feed; and (2) loaded highly on milk intake and hind milk fat percentage, indicating the process of breast emptying. In multivariate analyses of all session variables on infant LAZ and WAZ, only hind milk fat percentage was significantly negatively associated with LAZ (β = -0.14, P = .01 (two-tailed), R 2  = 0.070), confirmed by a significant negative association between LAZ and factor one (β = -0.32, P = .05 (two-tailed), R 2  = 0.090). This research describes the dynamics of a single nursing session, and has the potential to help explain variation in infant growth and nutrition. © 2017 Wiley Periodicals, Inc.

Variational study of the stability of the Nagaoka state against single-spin flips in the two-dimensional t-t#prime# Hubbard model

International Nuclear Information System (INIS)

Bajdich, M.; Hlubina, R.

2001-01-01

Making use of variational wave functions of the Basile-Elser type we study the stability of the Nagaoka state against single-spin flips in the two-dimensional t-t#prime# Hubbard model for t#prime#/t∼0.5. In the low-density limit the variational estimate of the stability region of the Nagaoka state is in qualitative agreement with the predictions of the T-matrix approximation

Single-quadrature continuous-variable quantum key distribution

DEFF Research Database (Denmark)

Gehring, Tobias; Jacobsen, Christian Scheffmann; Andersen, Ulrik Lund

2016-01-01

Most continuous-variable quantum key distribution schemes are based on the Gaussian modulation of coherent states followed by continuous quadrature detection using homodyne detectors. In all previous schemes, the Gaussian modulation has been carried out in conjugate quadratures thus requiring two...... commercialization of continuous-variable quantum key distribution, provided that the low noise requirement can be achieved....

Selecting sagebrush seed sources for restoration in a variable climate: ecophysiological variation among genotypes

Science.gov (United States)

Germino, Matthew J.

2012-01-01

Big sagebrush (Artemisia tridentata) communities dominate a large fraction of the United States and provide critical habitat for a number of wildlife species of concern. Loss of big sagebrush due to fire followed by poor restoration success continues to reduce ecological potential of this ecosystem type, particularly in the Great Basin. Choice of appropriate seed sources for restoration efforts is currently unguided due to knowledge gaps on genetic variation and local adaptation as they relate to a changing landscape. We are assessing ecophysiological responses of big sagebrush to climate variation, comparing plants that germinated from ~20 geographically distinct populations of each of the three subspecies of big sagebrush. Seedlings were previously planted into common gardens by US Forest Service collaborators Drs. B. Richardson and N. Shaw, (USFS Rocky Mountain Research Station, Provo, Utah and Boise, Idaho) as part of the Great Basin Native Plant Selection and Increase Project. Seed sources spanned all states in the conterminous Western United States. Germination, establishment, growth and ecophysiological responses are being linked to genomics and foliar palatability. New information is being produced to aid choice of appropriate seed sources by Bureau of Land Management and USFS field offices when they are planning seed acquisitions for emergency post-fire rehabilitation projects while considering climate variability and wildlife needs.

Single-strand conformation polymorphism (SSCP)-based mutation scanning approaches to fingerprint sequence variation in ribosomal DNA of ascaridoid nematodes.

Science.gov (United States)

Zhu, X Q; Gasser, R B

1998-06-01

In this study, we assessed single-strand conformation polymorphism (SSCP)-based approaches for their capacity to fingerprint sequence variation in ribosomal DNA (rDNA) of ascaridoid nematodes of veterinary and/or human health significance. The second internal transcribed spacer region (ITS-2) of rDNA was utilised as the target region because it is known to provide species-specific markers for this group of parasites. ITS-2 was amplified by PCR from genomic DNA derived from individual parasites and subjected to analysis. Direct SSCP analysis of amplicons from seven taxa (Toxocara vitulorum, Toxocara cati, Toxocara canis, Toxascaris leonina, Baylisascaris procyonis, Ascaris suum and Parascaris equorum) showed that the single-strand (ss) ITS-2 patterns produced allowed their unequivocal identification to species. While no variation in SSCP patterns was detected in the ITS-2 within four species for which multiple samples were available, the method allowed the direct display of four distinct sequence types of ITS-2 among individual worms of T. cati. Comparison of SSCP/sequencing with the methods of dideoxy fingerprinting (ddF) and restriction endonuclease fingerprinting (REF) revealed that also ddF allowed the definition of the four sequence types, whereas REF displayed three of four. The findings indicate the usefulness of the SSCP-based approaches for the identification of ascaridoid nematodes to species, the direct display of sequence variation in rDNA and the detection of population variation. The ability to fingerprint microheterogeneity in ITS-2 rDNA using such approaches also has implications for studying fundamental aspects relating to mutational change in rDNA.

Conspicuous plumage colours are highly variable.

Science.gov (United States)

Delhey, Kaspar; Szecsenyi, Beatrice; Nakagawa, Shinichi; Peters, Anne

2017-01-25

Elaborate ornamental traits are often under directional selection for greater elaboration, which in theory should deplete underlying genetic variation. Despite this, many ornamental traits appear to remain highly variable and how this essential variation is maintained is a key question in evolutionary biology. One way to address this question is to compare differences in intraspecific variability across different types of traits to determine whether high levels of variation are associated with specific trait characteristics. Here we assess intraspecific variation in more than 100 plumage colours across 55 bird species to test whether colour variability is linked to their level of elaboration (indicated by degree of sexual dichromatism and conspicuousness) or their condition dependence (indicated by mechanism of colour production). Conspicuous colours had the highest levels of variation and conspicuousness was the strongest predictor of variability, with high explanatory power. After accounting for this, there were no significant effects of sexual dichromatism or mechanisms of colour production. Conspicuous colours may entail higher production costs or may be more sensitive to disruptions during production. Alternatively, high variability could also be related to increased perceptual difficulties inherent to discriminating highly elaborate colours. Such psychophysical effects may constrain the exaggeration of animal colours. © 2017 The Author(s).

Conspicuous plumage colours are highly variable

OpenAIRE

Delhey, Kaspar; Szecsenyi, Beatrice; Nakagawa, Shinichi; Peters, Anne

2017-01-01

Elaborate ornamental traits are often under directional selection for greater elaboration, which in theory should deplete underlying genetic variation. Despite this, many ornamental traits appear to remain highly variable and how this essential variation is maintained is a key question in evolutionary biology. One way to address this question is to compare differences in intraspecific variability across different types of traits to determine whether high levels of variation are associated wit...

Causes and consequences of chromatin variation between inbred mice.

Directory of Open Access Journals (Sweden)

Mona Hosseini

2013-06-01

Full Text Available Variation at regulatory elements, identified through hypersensitivity to digestion by DNase I, is believed to contribute to variation in complex traits, but the extent and consequences of this variation are poorly characterized. Analysis of terminally differentiated erythroblasts in eight inbred strains of mice identified reproducible variation at approximately 6% of DNase I hypersensitive sites (DHS. Only 30% of such variable DHS contain a sequence variant predictive of site variation. Nevertheless, sequence variants within variable DHS are more likely to be associated with complex traits than those in non-variant DHS, and variants associated with complex traits preferentially occur in variable DHS. Changes at a small proportion (less than 10% of variable DHS are associated with changes in nearby transcriptional activity. Our results show that whilst DNA sequence variation is not the major determinant of variation in open chromatin, where such variants exist they are likely to be causal for complex traits.

Variability of X-ray emission from OB stars

International Nuclear Information System (INIS)

Collura, A.; Sciortino, S.; Serio, S.; Vaiana, G. S.; Harnden, F.R. JR.; Osservatorio Astronomico, Palermo, Italy; Harvard-Smithsonian Center for Astrophysics, Cambridge, MA)

1989-01-01

The variability in soft X-ray emission of 12 OB stars is studied. Two different methods of analysis, one more suitable for detecting short-term variations, the other aimed at detecting long time-scale variations, are applied to all stars in the sample. The long-term variability analysis shows that Cyg-OB2 8A Zeta Pup and Delta Ori exhibit significant count rate variations between different data sections. Similar variations are marginally detected in 15 Mon; the count rate variations for the other eight stars are consistent with statistical fluctuations. The light curve of Cyg-OB2 8A suggests the existence of two different emission levels. The short-term variability analysis detects marginal variability in Tau Sco with an effective amplitude of about 30 percent and a time scale of about 50 s. The upper limits to the effective short-term variability amplitude for all other sample stars are in the 10-30 percent range. 30 refs

Genetic variation in variability: phenotypic variability of fledging weight and its evolution in a songbird population

NARCIS (Netherlands)

Mulder, H.A.; Gienapp, P; Visser, ME

2016-01-01

Variation in traits is essential for natural selection to operate and genetic and environmental effects can contribute to this phenotypic variation. From domesticated populations, we know that families can differ in their level of within-family variance, which leads to the intriguing situation that

Research of thermal dynamic characteristics for variable load single screw refrigeration compressor with different capacity control mechanism

International Nuclear Information System (INIS)

Wang, Zengli; Wang, Zhenbo; Wang, Jun; Jiang, Wenchun; Feng, Quanke

2017-01-01

Highlights: • Theoretical models of SSRC under part-load condition have been established. • The experiment of SSRC performance under part-load condition was conducted. • Thermal dynamic characteristic of SSRC under part-load condition was gained. • Economy and reliability of SSRC under part-load condition was analyzed. - Abstract: In the single screw refrigeration compressor (SSRC), the capacity control mechanism is normally employed to meet the actual required cooling capacity under different load conditions. In this paper, theoretical calculation models describing the working process of the SSRC with the single slide valve capacity control mechanism (SVCCM) and SSRC with the frequency conversion regulating mechanism (FCRM) are established to research the thermal dynamic characteristics for variable load SSRC under part-load conditions. Experimental investigation on a SSRC under part-load conditions is also carried out to verify the theoretical calculation models. By using these validated models, the thermodynamic performances and dynamic characteristics of the SSRC with different capacity control mechanism under part-load conditions have been analyzed and compared. Through the comparison, the economical efficiency and reliability of the SSRC with different capacity control mechanism were obtained. All of these works can provide the basis for the later optimization design for the variable load single screw refrigeration compressor.

Self-Calibrating Wave-Encoded Variable-Density Single-Shot Fast Spin Echo Imaging.

Science.gov (United States)

Chen, Feiyu; Taviani, Valentina; Tamir, Jonathan I; Cheng, Joseph Y; Zhang, Tao; Song, Qiong; Hargreaves, Brian A; Pauly, John M; Vasanawala, Shreyas S

2018-04-01

It is highly desirable in clinical abdominal MR scans to accelerate single-shot fast spin echo (SSFSE) imaging and reduce blurring due to T 2 decay and partial-Fourier acquisition. To develop and investigate the clinical feasibility of wave-encoded variable-density SSFSE imaging for improved image quality and scan time reduction. Prospective controlled clinical trial. With Institutional Review Board approval and informed consent, the proposed method was assessed on 20 consecutive adult patients (10 male, 10 female, range, 24-84 years). A wave-encoded variable-density SSFSE sequence was developed for clinical 3.0T abdominal scans to enable high acceleration (3.5×) with full-Fourier acquisitions by: 1) introducing wave encoding with self-refocusing gradient waveforms to improve acquisition efficiency; 2) developing self-calibrated estimation of wave-encoding point-spread function and coil sensitivity to improve motion robustness; and 3) incorporating a parallel imaging and compressed sensing reconstruction to reconstruct highly accelerated datasets. Image quality was compared pairwise with standard Cartesian acquisition independently and blindly by two radiologists on a scale from -2 to 2 for noise, contrast, confidence, sharpness, and artifacts. The average ratio of scan time between these two approaches was also compared. A Wilcoxon signed-rank tests with a P value under 0.05 considered statistically significant. Wave-encoded variable-density SSFSE significantly reduced the perceived noise level and improved the sharpness of the abdominal wall and the kidneys compared with standard acquisition (mean scores 0.8, 1.2, and 0.8, respectively, P variable-density sampling SSFSE achieves improved image quality with clinically relevant echo time and reduced scan time, thus providing a fast and robust approach for clinical SSFSE imaging. 1 Technical Efficacy: Stage 6 J. Magn. Reson. Imaging 2018;47:954-966. © 2017 International Society for Magnetic Resonance in Medicine.

Immunological variation in Taenia solium porcine cysticercosis: measurement on the variation of the antibody immune response of naturally infected pigs against antigens extracted from their own cysticerci and from those of different pigs.

Science.gov (United States)

Ostoa-Saloma, Pedro; Esquivel-Velázquez, Marcela; Larralde, Carlos

2013-10-18

Although it is widely assumed that both antigen and host immunological variability are involved in the variable intensity of natural porcine infections by Taenia solium (T. solium) cysticercis and success of immunodiagnostic tests vaccines, the magnitude of such combined variability has not been studied or measured at all. In this paper we report statistical data on the variability of the antibody response of naturally infected pigs against the antigens extracted from the vesicular fluids of their own infecting cysts (variance within pigs) and against antigen samples extracted from cysts of other cysticercotic pigs (variance among pigs). The variation between pigs was greater than the inter-pigs variations, which suggests that a concomitant immunity process prevents the establishment of cysts coming from a subsequent challenge. In so doing, we found that there is not a single antigenic band that was recognized by all hosts and that antigens varied among the cysts within the same pigs as well as among pigs. Our results may be valuable for the improvement of immunodiagnostic tests and of effective vaccines against naturally acquired porcine T. solium cysticercosis. Copyright © 2013 Elsevier B.V. All rights reserved.

Solar ultraviolet irradiance variations: a review

International Nuclear Information System (INIS)

Lean, J.

1987-01-01

Despite the geophysical importance of solar ultraviolet radiation, specific aspects of its temporal variations have not yet been adequately determined experimentally, nor are the mechanisms for the variability completely understood. Satellite observations have verified the reality of solar ultraviolet irradiance variations over time scales of days and months, and model calculations have confirmed the association of these short-term variations with the evolution and rotation of regions of enhanced magnetic activity on the solar disc. However, neither rocket nor satellite measurements have yet been made with sufficient accuracy and regularity to establish unequivocally the nature of the variability over the longer time of the 11-year solar cycle. The comparative importance for the long-term variations of local regions of enhanced magnetic activity and global scale activity perturbations is still being investigated. Solar ultraviolet irradiance variations over both short and long time scales are reviewed, with emphasis on their connection to solar magnetic activity. Correlations with ground-based measures of solar variability are examined because of the importance of the ground-based observations as historical proxies of ultraviolet irradiance variations. Current problems in understanding solar ultraviolet irradiance variations are discussed, and the measurements planned for solar cycle 22, which may resolve these problems, are briefly described. copyright American Geophysical Union 1987

Time Variations of the Radial Velocity of H2O Masers in the Semi-Regular Variable R Crt

Science.gov (United States)

Sudou, Hiroshi; Shiga, Motoki; Omodaka, Toshihiro; Nakai, Chihiro; Ueda, Kazuki; Takaba, Hiroshi

2017-12-01

H2O maser emission {at 22 GHz} in the circumstellar envelope is one of the good tracers of detailed physics and inematics in the mass loss process of asymptotic giant branch stars. Long-term monitoring of an H2O maser spectrum with high time resolution enables us to clarify acceleration processes of the expanding shell in the stellar atmosphere. We monitored the H2O maser emission of the semi-regular variable R Crt with the Kagoshima 6-m telescope, and obtained a large data set of over 180 maser spectra over a period of 1.3 years with an observational span of a few days. Using an automatic peak detection method based on least-squares fitting, we exhaustively detected peaks as significant velocity components with the radial velocity on a 0.1 km s^{-1} scale. This analysis result shows that the radial velocity of red-shifted and blue-shifted components exhibits a change between acceleration and deceleration on the time scale of a few hundred days. These velocity variations are likely to correlate with intensity variations, in particular during flaring state of H2O masers. It seems reasonable to consider that the velocity variation of the maser source is caused by shock propagation in the envelope due to stellar pulsation.However, it is difficult to explain the relationship between the velocity variation and the intensity variation only from shock propagation effects. We found that a time delay of the integrated maser intensity with respect to the optical light curve is about 150 days.

Bilateral renal artery variation

OpenAIRE

Üçerler, Hülya; Üzüm, Yusuf; İkiz, Z. Aslı Aktan

2014-01-01

Each kidney is supplied by a single renal artery, although renal artery variations are common. Variations of the renal arteryhave become important with the increasing number of renal transplantations. Numerous studies describe variations in renalartery anatomy. Especially the left renal artery is among the most critical arterial variations, because it is the referred side forresecting the donor kidney. During routine dissection in a formalin fixed male cadaver, we have found a bilateral renal...

Sensitivity of the French Alps snow cover to the variation of climatic variables

Directory of Open Access Journals (Sweden)

E. Martin

Full Text Available In order to study the sensitivity of snow cover to changes in meteorological variables at a regional scale, a numerical snow model and an analysis system of the meteorological conditions adapted to relief were used. This approach has been successfully tested by comparing simulated and measured snow depth at 37 sites in the French Alps during a ten year data period. Then, the sensitivity of the snow cover to a variation in climatic conditions was tested by two different methods, which led to very similar results. To assess the impact of a particular "doubled CO₂" scenario, coherent perturbations were introduced in the input data of the snow model. It was found that although the impact would be very pronounced, it would also be extremely differentiated, dependent on the internal state of the snow cover. The most sensitive areas are the elevations below 2400 m, especially in the southern part of the French Alps.

Variation in orgasm occurrence by sexual orientation in a sample of U.S. singles.

Science.gov (United States)

Garcia, Justin R; Lloyd, Elisabeth A; Wallen, Kim; Fisher, Helen E

2014-11-01

Despite recent advances in understanding orgasm variation, little is known about ways in which sexual orientation is associated with men's and women's orgasm occurrence. To assess orgasm occurrence during sexual activity across sexual orientation categories. Data were collected by Internet questionnaire from 6,151 men and women (ages 21-65+ years) as part of a nationally representative sample of single individuals in the United States. Analyses were restricted to a subsample of 2,850 singles (1,497 men, 1,353 women) who had experienced sexual activity in the past 12 months. Participants reported their sex/gender, self-identified sexual orientation (heterosexual, gay/lesbian, bisexual), and what percentage of the time they experience orgasm when having sex with a familiar partner. Mean occurrence rate for experiencing orgasm during sexual activity with a familiar partner was 62.9% among single women and 85.1% among single men, which was significantly different (F1,2848  = 370.6, P sexual orientation: heterosexual men 85.5%, gay men 84.7%, bisexual men 77.6% (F2,1494  = 2.67, P = 0.07, η(2)  = 0.004). For women, however, mean occurrence rate of orgasm varied significantly by sexual orientation: heterosexual women 61.6%, lesbian women 74.7%, bisexual women 58.0% (F2,1350  = 10.95, P sexual orientation, have less predictable, more varied orgasm experiences than do men and that for women, but not men, the likelihood of orgasm varies with sexual orientation. These findings demonstrate the need for further investigations into the comparative sexual experiences and sexual health outcomes of sexual minorities. © 2014 International Society for Sexual Medicine.

Variability in an early hominin percussive tradition: the Acheulean versus cultural variation in modern chimpanzee artefacts.

Science.gov (United States)

Gowlett, J A J

2015-11-19

Percussion makes a vital link between the activities of early human ancestors and other animals in tool-use and tool-making. Far more of the early human actions are preserved as archaeology, since the percussion was largely used for making hard tools of stone, rather than for direct access to food. Both primate tools and early hominin tools, however, offer a means to exploring variability in material culture, a strong focus of interest in recent primate studies. This paper charts such variability in the Acheulean, the longest-lasting tool tradition, extant form about 1.7 to about 0.1 Ma, and well known for its characteristic handaxes. The paper concentrates on the African record, although the Acheulean was also known in Europe and Asia. It uses principal components and discriminant analysis to examine the measurements from 66 assemblages (whole toolkits), and from 18 sets of handaxes. Its review of evidence confirms that there is deep-seated pattern in the variation, with variability within a site complex often matching or exceeding that between sites far distant in space and time. Current techniques of study allow comparisons of handaxes far more easily than for other components, stressing a need to develop common practice in measurement and analysis. The data suggest, however, that a higher proportion of traits recurs widely in Acheulean toolkits than in the chimpanzee record. © 2015 The Author(s).

Single cell adhesion strength assessed with variable-angle total internal reflection fluorescence microscopy

Directory of Open Access Journals (Sweden)

Marcelina Cardoso Dos Santos

2017-06-01

Full Text Available We propose a new strategy to evaluate adhesion strength at the single cell level. This approach involves variable-angle total internal reflection fluorescence microscopy to monitor in real time the topography of cell membranes, i.e. a map of the membrane/substrate separation distance. According to the Boltzmann distribution, both potential energy profile and dissociation energy related to the interactions between the cell membrane and the substrate were determined from the membrane topography. We have highlighted on glass substrates coated with poly-L-lysine and fibronectin, that the dissociation energy is a reliable parameter to quantify the adhesion strength of MDA-MB-231 motile cells.

Step-to-step spatiotemporal variables and ground reaction forces of intra-individual fastest sprinting in a single session.

Science.gov (United States)

Nagahara, Ryu; Mizutani, Mirai; Matsuo, Akifumi; Kanehisa, Hiroaki; Fukunaga, Tetsuo

2018-06-01

We aimed to investigate the step-to-step spatiotemporal variables and ground reaction forces during the acceleration phase for characterising intra-individual fastest sprinting within a single session. Step-to-step spatiotemporal variables and ground reaction forces produced by 15 male athletes were measured over a 50-m distance during repeated (three to five) 60-m sprints using a long force platform system. Differences in measured variables between the fastest and slowest trials were examined at each step until the 22nd step using a magnitude-based inferences approach. There were possibly-most likely higher running speed and step frequency (2nd to 22nd steps) and shorter support time (all steps) in the fastest trial than in the slowest trial. Moreover, for the fastest trial there were likely-very likely greater mean propulsive force during the initial four steps and possibly-very likely larger mean net anterior-posterior force until the 17th step. The current results demonstrate that better sprinting performance within a single session is probably achieved by 1) a high step frequency (except the initial step) with short support time at all steps, 2) exerting a greater mean propulsive force during initial acceleration, and 3) producing a greater mean net anterior-posterior force during initial and middle acceleration.

Cost variation in a laparoscopic cholecystectomy and the association with outcomes across a single health system: implications for standardization and improved resource utilization

Science.gov (United States)

Brauer, David G; Hawkins, William G; Strasberg, Steven M; Brunt, L Michael; Jaques, David P; Mercurio, Nicholas R; Hall, Bruce L; Fields, Ryan C

2015-01-01

Background Payers and regulatory bodies are increasingly placing emphasis on cost containment, quality/outcome measurement and transparent reporting. Significant cost variation occurs in many operative procedures without a clear relationship with outcomes. Clear cost-benefit associations will be necessary to justify expenditures in the era of bundled payment structures. Methods All laparoscopic cholecystectomies (LCCKs) performed within a single health system over a 1-year period were analysed for operating room (OR) supply cost. The cost was correlated with American College of Surgeons National Surgical Quality Improvement Program (ACS NSQIP) outcomes. Results From July 2013 to June 2014, 2178 LCCKs were performed by 55 surgeons at seven hospitals. The median case OR supply cost was $513 ± 156. There was variation in cost between individual surgeons and within an individual surgeon's practice. There was no correlation between cost and ACS NSQIP outcomes. The majority of cost variation was explained by selection of trocar and clip applier constructs. Conclusions Significant case OR cost variation is present in LCCK across a single health system, and there is no clear association between increased cost and NSQIP outcomes. Placed within the larger context of overall cost, the opportunity exists for improved resource utilization with no obvious risk for a reduction in the quality of care. PMID:26345351

The nebular variables

CERN Document Server

Glasby, John S

1974-01-01

The Nebular Variables focuses on the nebular variables and their characteristics. Discussions are organized by type of nebular variable, namely, RW Aurigae stars, T Orionis stars, T Tauri stars, and peculiar nebular objects. Topics range from light variations of the stars to their spectroscopic and physical characteristics, spatial distribution, interaction with nebulosity, and evolutionary features. This volume is divided into four sections and consists of 25 chapters, the first of which provides general information on nebular variables, including their stellar associations and their classifi

Theory of planned behaviour variables and objective walking behaviour do not show seasonal variation in a randomised controlled trial.

Science.gov (United States)

Williams, Stefanie L; French, David P

2014-02-05

Longitudinal studies have shown that objectively measured walking behaviour is subject to seasonal variation, with people walking more in summer compared to winter. Seasonality therefore may have the potential to bias the results of randomised controlled trials if there are not adequate statistical or design controls. Despite this there are no studies that assess the impact of seasonality on walking behaviour in a randomised controlled trial, to quantify the extent of such bias. Further there have been no studies assessing how season impacts on the psychological predictors of walking behaviour to date. The aim of the present study was to assess seasonal differences in a) objective walking behaviour and b) Theory of Planned Behaviour (TPB) variables during a randomised controlled trial of an intervention to promote walking. 315 patients were recruited to a two-arm cluster randomised controlled trial of an intervention to promote walking in primary care. A series of repeated measures ANCOVAs were conducted to examine the effect of season on pedometer measures of walking behaviour and TPB measures, assessed immediately post-intervention and six months later. Hierarchical regression analyses were conducted to assess whether season moderated the prediction of intention and behaviour by TPB measures. There were no significant differences in time spent walking in spring/summer compared to autumn/winter. There was no significant seasonal variation in most TPB variables, although the belief that there will be good weather was significantly higher in spring/summer (F = 19.46, p behaviour, or moderate the effects of TPB variables on intention or behaviour. Seasonality does not influence objectively measured walking behaviour or psychological variables during a randomised controlled trial. Consequently physical activity behaviour outcomes in trials will not be biased by the season in which they are measured. Previous studies may have overestimated the extent of

Bias and Stability of Single Variable Classifiers for Feature Ranking and Selection.

Science.gov (United States)

Fakhraei, Shobeir; Soltanian-Zadeh, Hamid; Fotouhi, Farshad

2014-11-01

Feature rankings are often used for supervised dimension reduction especially when discriminating power of each feature is of interest, dimensionality of dataset is extremely high, or computational power is limited to perform more complicated methods. In practice, it is recommended to start dimension reduction via simple methods such as feature rankings before applying more complex approaches. Single Variable Classifier (SVC) ranking is a feature ranking based on the predictive performance of a classifier built using only a single feature. While benefiting from capabilities of classifiers, this ranking method is not as computationally intensive as wrappers. In this paper, we report the results of an extensive study on the bias and stability of such feature ranking method. We study whether the classifiers influence the SVC rankings or the discriminative power of features themselves has a dominant impact on the final rankings. We show the common intuition of using the same classifier for feature ranking and final classification does not always result in the best prediction performance. We then study if heterogeneous classifiers ensemble approaches provide more unbiased rankings and if they improve final classification performance. Furthermore, we calculate an empirical prediction performance loss for using the same classifier in SVC feature ranking and final classification from the optimal choices.

A Variable Single Photon Plasmonic Beamsplitter

DEFF Research Database (Denmark)

Israelsen, Niels Møller; Kumar, Shailesh; Huck, Alexander

Plasmonic structures can both be exploited for scaling down optical components beyond the diffraction limit and enhancing andcollecting the emission from a single dipole emitter. Here, we experimentally demonstrate adiabatic coupling between two silvernanowires using a nitrogen vacancy center as ...

A variable-temperature scanning tunneling microscope capable of single-molecule vibrational spectroscopy

International Nuclear Information System (INIS)

Stipe, B.C.; Rezaei, M.A.; Ho, W.

1999-01-01

The design and performance of a variable-temperature scanning tunneling microscope (STM) is presented. The microscope operates from 8 to 350 K in ultrahigh vacuum. The thermally compensated STM is suspended by springs from the cold tip of a continuous flow cryostat and is completely surrounded by two radiation shields. The design allows for in situ dosing and irradiation of the sample as well as for the exchange of samples and STM tips. With the STM feedback loop off, the drift of the tip-sample spacing is approximately 0.001 Angstrom/min at 8 K. It is demonstrated that the STM is well-suited for the study of atomic-scale chemistry over a wide temperature range, for atomic-scale manipulation, and for single-molecule inelastic electron tunneling spectroscopy (IETS). copyright 1999 American Institute of Physics

An investigation into the relationship between thickness variations and manufacturing techniques of mouthguards.

Science.gov (United States)

Farrington, Timothy; Coward, Trevor; Onambele-Pearson, Gladys; Taylor, Rebecca L; Earl, Philip; Winwood, Keith

2016-02-01

The aim of this study was to measure the finished thickness of a single identical 4-mm EVA mouthguard model from a large fabricated sample group and to evaluate the degree of material thinning and variations during the fabrication process. Twenty boxes were distributed to dental technician participants, each containing five duplicated dental models (n = 100), alongside 5 × 4 mm mouthguard blanks and a questionnaire. The mouthguards were measured using electronic callipers (resolution: ±0.01 mm) at three specific points. The five thickest and thinnest mouthguards were examined using a CT scanner to describe the surface typography unique to each mouthguard, highlighting dimensional thinning patterns during the fabrication process. Of the three measurement points, the anterior sulcus point of the mouthguard showed a significant degree of variation (up to 34% coefficient of variation), in finished mouthguard thickness between individuals. The mean thickness of the mouthguards in the anterior region was 1.62 ± 0.38 mm with a range of 0.77-2.80 mm. This variation was also evident in the occlusion and posterior lingual regions but to a lesser extent (up to 12.2% and 9.8% variations, respectively). This study highlights variability in the finished thickness of the mouthguards especially in the anterior sulcus region measurement point, both within and between individuals. At the anterior region measurement point of the mouthguard, the mean thickness was 1.62 mm, equating to an overall material thinning of 59.5% when using a single 4-mm EVA blank. This degree of thinning is comparative to previous single operator research studies. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

A novel anti-alpha-fetoprotein single-chain variable fragment displays anti-tumor effects in HepG2 cells as a single agent or in combination with paclitaxel.

Science.gov (United States)

Ji, Xiaonan; Shen, Yanli; Sun, Hao; Gao, Xiangdong

2016-08-01

Human hepatocellular carcinoma (HCC) has a high rate of tumor recurrence and metastasis, resulting in shortened survival time. The function of alpha-fetoprotein (AFP) as a regulatory factor in the growth of HCC cells has been well defined. The aim of this study was to investigate the use of a novel AFP-specific single-chain variable fragment that blocked AFP and inhibited HCC cell growth. The results indicated that the anti-AFP single-chain variable fragment (scFv) induced growth inhibition of AFP-expressing HCC cell lines in vitro through induction of G1 cell cycle arrest and apoptosis. The mechanism of apoptosis probably involved with blocking AFP internalization and regulation of the PTEN/PI3K/Akt signaling network. Moreover, the anti-AFP-scFv also effectively sensitized the HepG2 cells to paclitaxel (PTX) at a lower concentration. The combination effect of PTX and anti-AFP-scFv displayed a synergistic effect on HepG2 cells both in vitro and in vivo. Our results demonstrated that targeting AFP by specific antibodies has potential immunotherapeutic efficacy in human HCC.

Comparison of circadian, weekly, and seasonal variations of electrical storms and single events of ventricular fibrillation in patients with Brugada syndrome

Directory of Open Access Journals (Sweden)

Yoshiyasu Aizawa

2016-06-01

Full Text Available In patients with Brugada syndrome (BS, VF occurred predominantly during the nocturnal period. Some patients also developed ESs. In addition to the circadian rhythm, patients showed weekly and seasonal patterns. The patients with ESs had peak episodes of VF on Saturday and in the winter and spring, while episodes of VF in patients with single VF events occurred most often on Monday with smaller seasonal variation. Except for age, there was no difference in the clinical or ECG characteristics between the patients with ESs and those with single VF episodes.

Multi-level Bayesian analyses for single- and multi-vehicle freeway crashes.

Science.gov (United States)

Yu, Rongjie; Abdel-Aty, Mohamed

2013-09-01

This study presents multi-level analyses for single- and multi-vehicle crashes on a mountainous freeway. Data from a 15-mile mountainous freeway section on I-70 were investigated. Both aggregate and disaggregate models for the two crash conditions were developed. Five years of crash data were used in the aggregate investigation, while the disaggregate models utilized one year of crash data along with real-time traffic and weather data. For the aggregate analyses, safety performance functions were developed for the purpose of revealing the contributing factors for each crash type. Two methodologies, a Bayesian bivariate Poisson-lognormal model and a Bayesian hierarchical Poisson model with correlated random effects, were estimated to simultaneously analyze the two crash conditions with consideration of possible correlations. Except for the factors related to geometric characteristics, two exposure parameters (annual average daily traffic and segment length) were included. Two different sets of significant explanatory and exposure variables were identified for the single-vehicle (SV) and multi-vehicle (MV) crashes. It was found that the Bayesian bivariate Poisson-lognormal model is superior to the Bayesian hierarchical Poisson model, the former with a substantially lower DIC and more significant variables. In addition to the aggregate analyses, microscopic real-time crash risk evaluation models were developed for the two crash conditions. Multi-level Bayesian logistic regression models were estimated with the random parameters accounting for seasonal variations, crash-unit-level diversity and segment-level random effects capturing unobserved heterogeneity caused by the geometric characteristics. The model results indicate that the effects of the selected variables on crash occurrence vary across seasons and crash units; and that geometric characteristic variables contribute to the segment variations: the more unobserved heterogeneity have been accounted, the better

Variable trajectory model for regional assessments of air pollution from sulfur compounds.

Energy Technology Data Exchange (ETDEWEB)

Powell, D.C.; McNaughton, D.J.; Wendell, L.L.; Drake, R.L.

1979-02-01

This report describes a sulfur oxides atmospheric pollution model that calculates trajectories using single-layer historical wind data as well as chemical transformation and deposition following discrete contaminant air masses. Vertical diffusion under constraints is calculated, but all horizontal dispersion is a funcion of trajectory variation. The ground-level air concentrations and deposition are calculated in a rectangular area comprising the northeastern United States and southeastern Canada. Calculations for a 29-day assessment period in April 1974 are presented along with a limited verification. Results for the studies were calculated using a source inventory comprising 61% of the anthropogenic SO/sub 2/ emissions. Using current model parameterization levels, predicted concentration values are most sensitive to variations in dry deposition of SO/sub 2/, wet deposition of sulfate, and transformation of SO/sub 2/ to sulfate. Replacing the variable mixed-layer depth and variable stability features of the model with constant definitions of each results in increased ground-level concentration predicions for SO/sub 2/ and particularly for sulfate.

Fine-scale geographic variations of inflammatory bowel disease in France: correlation with socioeconomic and house equipment variables.

Science.gov (United States)

Nerich, Virginie; Monnet, Elisabeth; Weill, Alain; Vallier, Nathalie; Vanbockstael, Vincent; Auleley, Guy-Robert; Balaire, Corine; Dubost, Patrick; Rican, Stéphane; Allemand, Hubert; Carbonnel, Franck

2010-05-01

In a previous study we found a north-south gradient for Crohn's disease (CD) incidence in France. The aim of the present study was to determine if socioeconomic factors may influence the geographic distribution of CD and ulcerative colitis (UC) in France. Using the national health insurance databases, incidence rates of CD and UC were estimated for each of 341 metropolitan "job areas" in 2000-2002. Relationships between incidence rates and relevant contextual variables from the 1999 French census were tested for significance using a Poisson regression. Mapping of smoothed relative risks (sRR) for CD and UC at the scale of job areas, using a Bayesian approach and adjusting for significant contextual variables, was carried out in order to search for geographic variations. CD incidence rates were negatively related to the percentage of farmers and to the percentage of housing with bathroom and toilets and positively related to the unemployment rate and to the percentage of households below the poverty threshold. Mapping of sRR for CD showed a clear north-south gradient, which was slightly improved after including the percentage of farmers and the percentage of housing with toilets. In UC we found no significant correlation between either incidence and socioeconomic variables or incidence and house equipment variables, and there was no north-south gradient. However, there was a positive and significant correlation between CD and UC incidence. The present study shows that geographic risk factors of CD in France are northern latitude, nonrural areas, and areas with poor sanitary house equipment. Among these factors the most important is northern latitude.

Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method.

Science.gov (United States)

Denwood, M J; Love, S; Innocent, G T; Matthews, L; McKendrick, I J; Hillary, N; Smith, A; Reid, S W J

2012-08-13

The faecal egg count (FEC) is the most widely used means of quantifying the nematode burden of horses, and is frequently used in clinical practice to inform treatment and prevention. The statistical process underlying the FEC is complex, comprising a Poisson counting error process for each sample, compounded with an underlying continuous distribution of means between samples. Being able to quantify the sources of variability contributing to this distribution of means is a necessary step towards providing estimates of statistical power for future FEC and FECRT studies, and may help to improve the usefulness of the FEC technique by identifying and minimising unwanted sources of variability. Obtaining such estimates require a hierarchical statistical model coupled with repeated FEC observations from a single animal over a short period of time. Here, we use this approach to provide the first comparative estimate of multiple sources of within-horse FEC variability. The results demonstrate that a substantial proportion of the observed variation in FEC between horses occurs as a result of variation in FEC within an animal, with the major sources being aggregation of eggs within faeces and variation in egg concentration between faecal piles. The McMaster procedure itself is associated with a comparatively small coefficient of variation, and is therefore highly repeatable when a sufficiently large number of eggs are observed to reduce the error associated with the counting process. We conclude that the variation between samples taken from the same animal is substantial, but can be reduced through the use of larger homogenised faecal samples. Estimates are provided for the coefficient of variation (cv) associated with each within animal source of variability in observed FEC, allowing the usefulness of individual FEC to be quantified, and providing a basis for future FEC and FECRT studies. Copyright © 2012 Elsevier B.V. All rights reserved.

The central star candidate of the planetary nebula Sh2-71: photometric and spectroscopic variability

Science.gov (United States)

Močnik, T.; Lloyd, M.; Pollacco, D.; Street, R. A.

2015-07-01

We present the analysis of several newly obtained and archived photometric and spectroscopic data sets of the intriguing and yet poorly understood 13.5 mag central star candidate of the bipolar planetary nebula Sh2-71. Photometric observations confirmed the previously determined quasi-sinusoidal light curve with a period of 68 d and also indicated periodic sharp brightness dips, possibly eclipses, with a period of 17.2 d. In addition, the comparison between U and V light curves revealed that the 68 d brightness variations are accompanied by a variable reddening effect of ΔE(U - V) = 0.38. Spectroscopic data sets demonstrated pronounced variations in spectral profiles of Balmer, helium and singly ionized metal lines and indicated that these variations occur on a time-scale of a few days. The most accurate verification to date revealed that spectral variability is not correlated with the 68 d brightness variations. The mean radial velocity of the observed star was measured to be ˜26 km s-1 with an amplitude of ±40 km s-1. The spectral type was determined to be B8V through spectral comparison with synthetic and standard spectra. The newly proposed model for the central star candidate is a Be binary with a misaligned precessing disc.

SU-E-T-263: Point Dose Variation Using a Single Ir-192 HDR Brachytherapy Plan for Two Treatments with a Single Tandem-Ovoid Insertion for Cervical Cancer

Energy Technology Data Exchange (ETDEWEB)

Liang, X; Morrill, S; Hardee, M; Han, E; Penagaricano, J; Zhang, X; Vaneerat, R [University of Arkansas Medical Science, Little Rock, AR (United States)

2014-06-01

Purpose: To evaluate the point dose variations between Ir-192 HDR treatments on two consecutive days using a single tandem-ovoid insertion without replanning in cervical cancer patients. Methods: This study includes eleven cervical cancer patients undergoing HDR brachytherapy with a prescribed dose of 28 Gy in 4 fractions. Each patient had two tandemovoid insertions one week apart. Each insertion was treated on consecutive days with rescanning and replanning prior to each treatment. To study the effect of no replanning for day 2 treatments, the day 1 plan dwell position and dwell time with decay were applied to the day 2 CT dataset. The point dose variations on the prescription point H (defined according to American Brachytherapy Society), and normal tissue doses at point B, bladder, rectum and vaginal mucosa (based on ICRU Report 38) were obtained. Results: Without replanning, the mean point H dose variation was 4.6 ± 10.7% on the left; 2.3 ± 2.9% on the right. The mean B point variation was 3.8 ± 4.9% on the left; 3.6 ± 4.7% on the right. The variation in the left vaginal mucosal point was 12.2 ± 10.7%; 9.5 ± 12.5% on the right; the bladder point 5.5 ± 7.4%; and the rectal point 7.9 ± 9.1%. Conclusion: Without replanning, there are variations both in the prescription point and the normal tissue point doses. The latter can vary as much as 10% or more. This is likely due to the steep dose gradient from brachytherapy compounded by shifts in the positions of the applicator in relationship to the patients anatomy. Imaging prior to each treatment and replanning ensure effective and safe brachytherapy are recommended.

Variability of CSF Alzheimer's disease biomarkers: implications for clinical practice.

Directory of Open Access Journals (Sweden)

Stephanie J B Vos

Full Text Available BACKGROUND: Cerebrospinal fluid (CSF biomarkers are increasingly being used for diagnosis of Alzheimer's disease (AD. OBJECTIVE: We investigated the influence of CSF intralaboratory and interlaboratory variability on diagnostic CSF-based AD classification of subjects and identified causes of this variation. METHODS: We measured CSF amyloid-β (Aβ 1-42, total tau (t-tau, and phosphorylated tau (p-tau by INNOTEST enzyme-linked-immunosorbent assays (ELISA in a memory clinic population (n = 126. Samples were measured twice in a single or two laboratories that served as reference labs for CSF analyses in the Netherlands. Predefined cut-offs were used to classify CSF biomarkers as normal or abnormal/AD pattern. RESULTS: CSF intralaboratory variability was higher for Aβ1-42 than for t-tau and p-tau. Reanalysis led to a change in biomarker classification (normal vs. abnormal of 26% of the subjects based on Aβ1-42, 10% based on t-tau, and 29% based on p-tau. The changes in absolute biomarker concentrations were paralleled by a similar change in levels of internal control samples between different assay lots. CSF interlaboratory variability was higher for p-tau than for Aβ1-42 and t-tau, and reanalysis led to a change in biomarker classification of 12% of the subjects based on Aβ1-42, 1% based on t-tau, and 22% based on p-tau. CONCLUSIONS: Intralaboratory and interlaboratory CSF variability frequently led to change in diagnostic CSF-based AD classification for Aβ1-42 and p-tau. Lot-to-lot variation was a major cause of intralaboratory variability. This will have implications for the use of these biomarkers in clinical practice.

The discovery of timescale-dependent color variability of quasars

Energy Technology Data Exchange (ETDEWEB)

Sun, Yu-Han; Wang, Jun-Xian; Chen, Xiao-Yang [CAS Key Laboratory for Research in Galaxies and Cosmology, Department of Astronomy, University of Science and Technology of China, Hefei, Anhui 230026 (China); Zheng, Zhen-Ya, E-mail: sunyh92@mail.ustc.edu.cn, E-mail: jxw@ustc.edu.cn [School of Earth and Space Exploration, Arizona State University, Tempe, AZ 85287 (United States)

2014-09-01

Quasars are variable on timescales from days to years in UV/optical and generally appear bluer while they brighten. The physics behind the variations in fluxes and colors remains unclear. Using Sloan Digital Sky Survey g- and r-band photometric monitoring data for quasars in Stripe 82, we find that although the flux variation amplitude increases with timescale, the color variability exhibits the opposite behavior. The color variability of quasars is prominent at timescales as short as ∼10 days, but gradually reduces toward timescales up to years. In other words, the variable emission at shorter timescales is bluer than that at longer timescales. This timescale dependence is clearly and consistently detected at all redshifts from z = 0 to 3.5; thus, it cannot be due to contamination to broadband photometry from emission lines that do not respond to fast continuum variations. The discovery directly rules out the possibility that simply attributes the color variability to contamination from a non-variable redder component such as the host galaxy. It cannot be interpreted as changes in global accretion rate either. The thermal accretion disk fluctuation model is favored in the sense that fluctuations in the inner, hotter region of the disk are responsible for short-term variations, while longer-term and stronger variations are expected from the larger and cooler disk region. An interesting implication is that one can use quasar variations at different timescales to probe disk emission at different radii.

Effects of Parkinson's Disease on Fundamental Frequency Variability in Running Speech.

Science.gov (United States)

Bowen, Leah K; Hands, Gabrielle L; Pradhan, Sujata; Stepp, Cara E

2013-09-01

In Parkinson's Disease (PD), qualitative speech changes such as decreased variation in pitch and loudness are common, but quantitative vocal changes are not well documented. The variability of fundamental frequency (F0) in 32 individuals (23 male) with PD both ON and OFF levodopa medication was compared with 32 age-matched healthy controls (23 male). Participants read a single paragraph and estimates of fundamental frequency (F0) variability were determined for the entire reading passage as well as for the first and last sentences of the passage separately. F0 variability was significantly increased in controls relative to both PD groups and PD patients showed significantly higher F0 variability while ON medication relative to OFF. No significant effect of group was seen in the change in F0 variability from the beginning to the end of the reading passage. Female speakers were found to have higher F0 variability than males. F0 variability was both significantly reduced in PD relative to controls and significantly increased in patients with PD during use of dopaminergic medications. F0 variability changes over the course of reading a paragraph may not be indicative of PD but rather dependent on non-disease factors such as the linguistic characteristics of the text.

Few single nucleotide variations in exomes of human cord blood induced pluripotent stem cells.

Directory of Open Access Journals (Sweden)

Rui-Jun Su

Full Text Available The effect of the cellular reprogramming process per se on mutation load remains unclear. To address this issue, we performed whole exome sequencing analysis of induced pluripotent stem cells (iPSCs reprogrammed from human cord blood (CB CD34(+ cells. Cells from a single donor and improved lentiviral vectors for high-efficiency (2-14% reprogramming were used to examine the effects of three different combinations of reprogramming factors: OCT4 and SOX2 (OS, OS and ZSCAN4 (OSZ, OS and MYC and KLF4 (OSMK. Five clones from each group were subject to whole exome sequencing analysis. We identified 14, 11, and 9 single nucleotide variations (SNVs, in exomes, including untranslated regions (UTR, in the five clones of OSMK, OS, and OSZ iPSC lines. Only 8, 7, and 4 of these, respectively, were protein-coding mutations. An average of 1.3 coding mutations per CB iPSC line is remarkably lower than previous studies using fibroblasts and low-efficiency reprogramming approaches. These data demonstrate that point nucleotide mutations during cord blood reprogramming are negligible and that the inclusion of genome stabilizers like ZSCAN4 during reprogramming may further decrease reprogramming-associated mutations. Our findings provide evidence that CB is a superior source of cells for iPSC banking.

Integrated single grating compressor for variable pulse front tilt in simultaneously spatially and temporally focused systems.

Science.gov (United States)

Block, Erica; Thomas, Jens; Durfee, Charles; Squier, Jeff

2014-12-15

A Ti:Al(3)O(2) multipass chirped pulse amplification system is outfitted with a single-grating, simultaneous spatial and temporal focusing (SSTF) compressor platform. For the first time, this novel design has the ability to easily vary the beam aspect ratio of an SSTF beam, and thus the degree of pulse-front tilt at focus, while maintaining a net zero-dispersion system. Accessible variation of pulse front tilt gives full spatiotemporal control over the intensity distribution at the focus and could lead to better understanding of effects such as nonreciprocal writing and SSTF-material interactions.

Studies of genetic variability of the glucose transporter 2 promoter in patients with type 2 diabetes mellitus

DEFF Research Database (Denmark)

Møller, A M; Jensen, N M; Pildal, J

2001-01-01

This study was performed to test the hypothesis that genetic variation in the promoter of the glucose transporter 2 (GLUT2) might predispose to prediabetic phenotypes or type 2 diabetes. A total of 1611 bp comprising the minimal promoter region of the GLUT2 gene were examined by combined single-s......-tolerant subjects. In conclusion, we found no evidence supporting the hypothesis that genetic variability in the minimal promoter of the GLUT2 is associated with type 2 diabetes or prediabetic phenotypes in the Danish population.......This study was performed to test the hypothesis that genetic variation in the promoter of the glucose transporter 2 (GLUT2) might predispose to prediabetic phenotypes or type 2 diabetes. A total of 1611 bp comprising the minimal promoter region of the GLUT2 gene were examined by combined single...

Modulating the single-molecule magnet behaviour in phenoxo-O bridged Dy2 systems via subtle structural variations

Science.gov (United States)

Wang, Wen-Min; Zhao, Xiao-Yu; Qiao, Hui; Bai, Li; Han, Hong-Fei; Fang, Ming; Wu, Zhi-Lei; Zou, Ji-Yong

2017-09-01

In search of simple approaches to rationally modulate the single-molecule magnet behaviour in polynuclear lanthanide compound, a new system containing two structurally closely related dinuclear dysprosium complexes, namely [Dy2(hfac)4L2] (1) and [Dy2(hfac)4L‧2] (2) (hfac = hexafluoroacetylacetonate, HL = 2-[4-methylaniline-imino]methyl]-8-hydroxyquinoline and HL' = 2-[(3,4-dimethylaniline)-imino]methyl]-8-hydroxyquinoline), are successfully synthesized and the structure-dependent magnetic properties are investigated. The two Dy2 compounds display only slight variations in the coordination geometries of the center Dy(III) ion but display remarkably different single-molecule magnet behaviors with the anisotropic barriers (ΔE/kB) of 9.91 K for 1 and 20.57 K for 2. The different magnetic relaxation behaviors of the two Dy2 complexes mainly originate from the different chemical environments of the central DyIII ions.

Practice Variation in Single-Ventricle Patients Undergoing Elective Cardiac Catheterization: A Report from the Congenital Cardiac Catheterization Project on Outcomes (C3PO).

Science.gov (United States)

Goldstein, Bryan H; Holzer, Ralf J; Trucco, Sara M; Porras, Diego; Murphy, Joshua; Foerster, Susan R; El-Said, Howaida G; Beekman, Robert H; Bergersen, Lisa

2016-01-01

The objective of this study was to investigate variation in practice surrounding elective cardiac catheterization in patients with single-ventricle (SV) congenital heart disease. Patient and procedural characteristics and outcomes during SV catheterization were collected prospectively from eight centers using a web-based registry (Congenital Cardiac Catheterization Project on Outcomes). We attempted to identify a population of elective procedures by limiting the cohort in case type and timing. Cases were then stratified by stage of SV palliation (pre-bidirectional cavopulmonary anastomosis [pre-BCPA], pre-Fontan and post-Fontan) and limited by age. Subcohort analysis was performed by mode of airway management (assisted vs. spontaneous ventilation). Institutional variation was assessed. Between 2/2007 and 6/2010, 1459 (10.1%) of 14 467 cases in the registry met the inclusion and exclusion criteria, including 326 pre-BCPA, 571 pre-Fontan and 562 post-Fontan procedures. Median patient age was 0.4 (interquartile range 0.3, 0.5), 2.6 (1.0, 3.4) and 9.6 (5.2, 15.4) years and weight was 5.6 (4.8, 6.4), 12.2 (10.5, 14), and 26.3 (16.6, 51.8) kg in the pre-BCPA, pre-Fontan and post-Fontan cohorts, respectively. Cases were more commonly diagnostic in the pre-BCPA cohort (57%) whereas they were more commonly interventional in the pre-Fontan (69%) and post-Fontan (77%) cohorts. At least one adverse event (AE) occurred in 210 cases (14.4%) overall, including 20% of pre-BCPA, 11% of pre-Fontan and 14% of post-Fontan catheterizations. Mode of airway management was associated with statistically significant, but clinically small differences in hemodynamic measures in the pre- and post-Fontan cohorts, but not in the pre-BCPA group. Considerable practice variation exists across centers with variability in airway management, AE rate, case type, interventions performed and fluoroscopy time, in all SV cohorts. Elective catheterization in SV patients, frequently performed with

Intraspecific variability and reaction norms of forest understory plant species traits

Science.gov (United States)

Burton, Julia I.; Perakis, Steven; McKenzie, Sean C.; Lawrence, Caitlin E.; Puettmann, Klaus J.

2017-01-01

Trait-based models of ecological communities typically assume intraspecific variation in functional traits is not important, though such variation can change species trait rankings along gradients in resources and environmental conditions, and thus influence community structure and function.We examined the degree of intraspecific relative to interspecific variation, and reaction norms of 11 functional traits for 57 forest understory plant species, including: intrinsic water-use efficiency (iWUE), Δ15N, 5 leaf traits, 2 stem traits and 2 root traits along gradients in light, nitrogen, moisture and understory cover.Our results indicate that interspecific trait variation exceeded intraspecific variation by at least 50% for most, but not all traits. Intraspecific variation in Δ15N, iWUE, leaf nitrogen content and root traits was high (47-70%) compared with most leaf traits and stem traits (13-38%).Δ15N varied primarily along gradients in abiotic conditions, while light and understory cover were relatively less important. iWUE was related primarily to light transmission, reflecting increases in photosynthesis relative to stomatal conductance. Leaf traits varied mainly as a function of light availability, with some reaction norms depending on understory cover. Plant height increased with understory cover, while stem specific density was related primarily to light. Resources, environmental conditions and understory cover did not contribute strongly to the observed variation in root traits.Gradients in resources, environmental conditions and competition all appear to control intraspecific variability in most traits to some extent. However, our results suggest that species cross-over (i.e., trait rank reversals) along the gradients measured here are generally not a concern.Intraspecific variability in understory plant species traits can be considerable. However, trait data collected under a narrow range of environmental conditions appears sufficient to establish species

Mind the Gap! A Multilevel Analysis of Factors Related to Variation in Published Cost-Effectiveness Estimates within and between Countries.

Science.gov (United States)

Boehler, Christian E H; Lord, Joanne

2016-01-01

Published cost-effectiveness estimates can vary considerably, both within and between countries. Despite extensive discussion, little is known empirically about factors relating to these variations. To use multilevel statistical modeling to integrate cost-effectiveness estimates from published economic evaluations to investigate potential causes of variation. Cost-effectiveness studies of statins for cardiovascular disease prevention were identified by systematic review. Estimates of incremental costs and effects were extracted from reported base case, sensitivity, and subgroup analyses, with estimates grouped in studies and in countries. Three bivariate models were developed: a cross-classified model to accommodate data from multinational studies, a hierarchical model with multinational data allocated to a single category at country level, and a hierarchical model excluding multinational data. Covariates at different levels were drawn from a long list of factors suggested in the literature. We found 67 studies reporting 2094 cost-effectiveness estimates relating to 23 countries (6 studies reporting for more than 1 country). Data and study-level covariates included patient characteristics, intervention and comparator cost, and some study methods (e.g., discount rates and time horizon). After adjusting for these factors, the proportion of variation attributable to countries was negligible in the cross-classified model but moderate in the hierarchical models (14%-19% of total variance). Country-level variables that improved the fit of the hierarchical models included measures of income and health care finance, health care resources, and population risks. Our analysis suggested that variability in published cost-effectiveness estimates is related more to differences in study methods than to differences in national context. Multinational studies were associated with much lower country-level variation than single-country studies. These findings are for a single clinical

Within-Individual Variation in Preferences Equity Effects of Congestion Charges

DEFF Research Database (Denmark)

Borjesson, Maria; Cherchi, Elisabetta; Bierlaire, Michel

2013-01-01

in VTT arising from income differences was found to be substantially smaller than the variation in VTT between trips. Moreover, the variability in VTT averaged over all trips within each individual was considerably smaller than the variability in VTT for all observed trips. Therefore, the assumption...... that variation in VTT between observed trips reflects the variation in the average VTT between individuals, which is usually made in equity analyses, will over-state the between-individual variation. The results suggest that if intraindividual variation in preferences is not taken into account, the negative...

RELIABILITY OF KINEMATICS AND KINETICS ASSOCIATED WITH HORIZONTAL SINGLE LEG DROP JUMP ASSESSMENT. A BRIEF REPORT

Directory of Open Access Journals (Sweden)

Markus Stålbom

2007-06-01

Full Text Available Determining the reliability of a unilateral horizontal drop jump for displacement provided the focus for this research. Eighteen male subjects were required to step off a 20cm box and land on a force plate with one leg and thereafter jump for maximal horizontal displacement on two different days. Dependent variables from the jump assessment included mean and peak vertical (V and horizontal (H ground reaction forces (GRF and impulses, horizontal displacement and contact time. The between-trial variability of all kinematic and kinetic measures was less than 7%. The most consistent measure over both trials was the horizontal displacement jumped (1.2 to 1.4% and the most variable were the contact time the first day (6.5% and peak HGRF the second day (4.3%. In all cases there was less variation associated with the second rather than the first day. In terms of test-retest variability the percent changes in the means and coefficient of variations (CVs were all under 10%. The smallest changes in the mean (0.43 %, least variation (< 2.26 % and second highest intraclass correlation co-efficient (ICC = 0.95 were found for horizontal displacement jumped. The highest ICC (0.96 was found for horizontal impulse. Given the reliability of the single leg drop jump, it may offer better prognostic and diagnostic information than that obtained with bilateral vertical jumps

Direct and indirect effects of climatic variations on the interannual variability in net ecosystem exchange across terrestrial ecosystems

Directory of Open Access Journals (Sweden)

Junjiong Shao

2016-08-01

Full Text Available Climatic variables not only directly affect the interannual variability (IAV in net ecosystem exchange of CO2 (NEE but also indirectly drive it by changing the physiological parameters. Identifying these direct and indirect paths can reveal the underlying mechanisms of carbon (C dynamics. In this study, we applied a path analysis using flux data from 65 sites to quantify the direct and indirect climatic effects on IAV in NEE and to evaluate the potential relationships among the climatic variables and physiological parameters that represent physiology and phenology of ecosystems. We found that the maximum photosynthetic rate was the most important factor for the IAV in gross primary productivity (GPP, which was mainly induced by the variation in vapour pressure deficit. For ecosystem respiration (RE, the most important drivers were GPP and the reference respiratory rate. The biome type regulated the direct and indirect paths, with distinctive differences between forests and non-forests, evergreen needleleaf forests and deciduous broadleaf forests, and between grasslands and croplands. Different paths were also found among wet, moist and dry ecosystems. However, the climatic variables can only partly explain the IAV in physiological parameters, suggesting that the latter may also result from other biotic and disturbance factors. In addition, the climatic variables related to NEE were not necessarily the same as those related to GPP and RE, indicating the emerging difficulty encountered when studying the IAV in NEE. Overall, our results highlight the contribution of certain physiological parameters to the IAV in C fluxes and the importance of biome type and multi-year water conditions, which should receive more attention in future experimental and modelling research.

State Variation in Medicaid Reimbursements for Orthopaedic Surgery.

Science.gov (United States)

Lalezari, Ramin M; Pozen, Alexis; Dy, Christopher J

2018-02-07

Medicaid reimbursements are determined by each state and are subject to variability. We sought to quantify this variation for commonly performed inpatient orthopaedic procedures. The 10 most commonly performed inpatient orthopaedic procedures, as ranked by the Healthcare Cost and Utilization Project (HCUP) National Inpatient Sample, were identified for study. Medicaid reimbursement amounts for those procedures were benchmarked to state Medicare reimbursement amounts in 3 ways: (1) ratio, (2) dollar difference, and (3) dollar difference divided by the relative value unit (RVU) amount. Variability was quantified by determining the range and coefficient of variation for those reimbursement amounts. The range of variability of Medicaid reimbursements among states exceeded $1,500 for all 10 procedures. The coefficients of variation ranged from 0.32 (hip hemiarthroplasty) to 0.57 (posterior or posterolateral lumbar interbody arthrodesis) (a higher coefficient indicates greater variability), compared with 0.07 for Medicare reimbursements for all 10 procedures. Adjusted as a dollar difference between Medicaid and Medicare per RVU, the median values ranged from -$8/RVU (total knee arthroplasty) to -$17/RVU (open reduction and internal fixation of the femur). Variability of Medicaid reimbursement for inpatient orthopaedic procedures among states is substantial. This variation becomes especially remarkable given recent policy shifts toward focusing reimbursements on value.

Vortex variable range hopping in a conventional superconducting film

Science.gov (United States)

Percher, Ilana M.; Volotsenko, Irina; Frydman, Aviad; Shklovskii, Boris I.; Goldman, Allen M.

2017-12-01

The behavior of a disordered amorphous thin film of superconducting indium oxide has been studied as a function of temperature and magnetic field applied perpendicular to its plane. A superconductor-insulator transition has been observed, though the isotherms do not cross at a single point. The curves of resistance versus temperature on the putative superconducting side of this transition, where the resistance decreases with decreasing temperature, obey two-dimensional Mott variable-range hopping of vortices over wide ranges of temperature and resistance. To estimate the parameters of hopping, the film is modeled as a granular system and the hopping of vortices is treated in a manner analogous to hopping of charges. The reason the long-range interaction between vortices over the range of magnetic fields investigated does not lead to a stronger variation of resistance with temperature than that of two-dimensional Mott variable-range hopping remains unresolved.

Influence of Surface Roughness Spatial Variability and Temporal Dynamics on the Retrieval of Soil Moisture from SAR Observations

Directory of Open Access Journals (Sweden)

Jesús Álvarez-Mozos

2009-01-01

Full Text Available Radar-based surface soil moisture retrieval has been subject of intense research during the last decades. However, several difficulties hamper the operational estimation of soil moisture based on currently available spaceborne sensors. The main difficulty experienced so far results from the strong influence of other surface characteristics, mainly roughness, on the backscattering coefficient, which hinders the soil moisture inversion. This is especially true for single configuration observations where the solution to the surface backscattering problem is ill-posed. Over agricultural areas cultivated with winter cereal crops, roughness can be assumed to remain constant along the growing cycle allowing the use of simplified approaches that facilitate the estimation of the moisture content of soils. However, the field scale spatial variability and temporal variations of roughness can introduce errors in the estimation of soil moisture that are difficult to evaluate. The objective of this study is to assess the impact of roughness spatial variability and roughness temporal variations on the retrieval of soil moisture from radar observations. A series of laser profilometer measurements were performed over several fields in an experimental watershed from September 2004 to March 2005. The influence of the observed roughness variability and its temporal variations on the retrieval of soil moisture is studied using simulations performed with the Integral Equation Model, considering different sensor configurations. Results show that both field scale roughness spatial variability and its temporal variations are aspects that need to be taken into account, since they can introduce large errors on the retrieved soil moisture values.

Radial velocity variations of photometrically quiet, chromospherically inactive Kepler stars: A link between RV jitter and photometric flicker

Energy Technology Data Exchange (ETDEWEB)

Bastien, Fabienne A.; Stassun, Keivan G.; Pepper, Joshua [Physics and Astronomy Department, Vanderbilt University, 1807 Station B, Nashville, TN 37235 (United States); Wright, Jason T. [Center for Exoplanets and Habitable Worlds, 525 Davey Laboratory, The Pennsylvania State University, University Park, PA 16803 (United States); Aigrain, Suzanne [Sub-department of Astrophysics, Department of Physics, University of Oxford, Oxford OX1 3RH (United Kingdom); Basri, Gibor [Astronomy Department, University of California, Berkeley, CA 94720 (United States); Johnson, John A. [Department of Astrophysics, California Institute of Technology, MC 249-17, Pasadena, CA 91125 (United States); Howard, Andrew W. [Institute for Astronomy, University of Hawaii, 2680 Woodlawn Drive, Honolulu, HI 96822 (United States); Walkowicz, Lucianne M. [Department of Astrophysical Sciences, Princeton University, 4 Ivy Lane, Princeton, NJ 08544 (United States)

2014-02-01

We compare stellar photometric variability, as measured from Kepler light curves by Basri et al., with measurements of radial velocity (RV) rms variations of all California Planet Search overlap stars. We newly derive rotation periods from the Kepler light curves for all of the stars in our study sample. The RV variations reported herein range from less than 4 to 135 m s{sup –1}, yet the stars all have amplitudes of photometric variability less than 3 mmag, reflecting the preference of the RV program for chromospherically 'quiet' stars. Despite the small size of our sample, we find with high statistical significance that the RV rms manifests strongly in the Fourier power spectrum of the light curve: stars that are noisier in RV have a greater number of frequency components in the light curve. We also find that spot models of the observed light curves systematically underpredict the observed RV variations by factors of ∼2-1000, likely because the low-level photometric variations in our sample are driven by processes not included in simple spot models. The stars best fit by these models tend to have simpler light curves, dominated by a single relatively high-amplitude component of variability. Finally, we demonstrate that the RV rms behavior of our sample can be explained in the context of the photometric variability evolutionary diagram introduced by Bastien et al. We use this diagram to derive the surface gravities of the stars in our sample, revealing many of them to have moved off the main sequence. More generally, we find that the stars with the largest RV rms are those that have evolved onto the 'flicker floor' sequence in that diagram, characterized by relatively low amplitude but highly complex photometric variations which grow as the stars evolve to become subgiants.

Identifying Variations in Hydraulic Conductivity on the East River at Crested Butte, CO

Science.gov (United States)

Ulmer, K. N.; Malenda, H. F.; Singha, K.

2016-12-01

Slug tests are a widely used method to measure saturated hydraulic conductivity, or how easily water flows through an aquifer, by perturbing the piezometric surface and measuring the time the local groundwater table takes to re-equilibrate. Saturated hydraulic conductivity is crucial to calculating the speed and direction of groundwater movement. Therefore, it is important to document data variance from in situ slug tests. This study addresses two potential sources of data variability: different users and different types of slug used. To test for user variability, two individuals slugged the same six wells with water multiple times at a stream meander on the East River near Crested Butte, CO. To test for variations in type of slug test, multiple water and metal slug tests were performed at a single well in the same meander. The distributions of hydraulic conductivities of each test were then tested for variance using both the Kruskal-Wallis test and the Brown-Forsythe test. When comparing the hydraulic conductivity distributions gathered by the two individuals, we found that they were statistically similar. However, we found that the two types of slug tests produced hydraulic conductivity distributions for the same well that are statistically dissimilar. In conclusion, multiple people should be able to conduct slug tests without creating any considerable variations in the resulting hydraulic conductivity values, but only a single type of slug should be used for those tests.

Solar Variability and Planetary Climates

CERN Document Server

Calisesi, Y; Gray, L; Langen, J; Lockwood, M

2007-01-01

Variations in solar activity, as revealed by variations in the number of sunspots, have been observed since ancient times. To what extent changes in the solar output may affect planetary climates, though, remains today more than ever a subject of controversy. In 2000, the SSSI volume on Solar Variability and Climate reviewed the to-date understanding of the physics of solar variability and of the associated climate response. The present volume on Solar Variability and Planetary Climates provides an overview of recent advances in this field, with particular focus at the Earth's middle and lower atmosphere. The book structure mirrors that of the ISSI workshop held in Bern in June 2005, the collection of invited workshop contributions and of complementary introductory papers synthesizing the current understanding in key research areas such as middle atmospheric processes, stratosphere-troposphere dynamical coupling, tropospheric aerosols chemistry, solar storm influences, solar variability physics, and terrestri...

A Set of Plastid Loci for Use in Multiplex Fragment Length Genotyping for Intraspecific Variation in Pinus (Pinaceae

Directory of Open Access Journals (Sweden)

Austin M. Wofford

2014-04-01

Full Text Available Premise of the study: Recently released Pinus plastome sequences support characterization of 15 plastid simple sequence repeat (cpSSR loci originally published for P. contorta and P. thunbergii. This allows selection of loci for single-tube PCR multiplexed genotyping in any subsection of the genus. Methods: Unique placement of primers and primer conservation across the genus were investigated, and a set of six loci were selected for single-tube multiplexing. We compared interspecific variation between cpSSRs and nucleotide sequences ofycf1 and tested intraspecific variation for cpSSRs using 911 samples in the P. ponderosa species complex. Results: The cpSSR loci contain mononucleotide and complex repeats with additional length variation in flanking regions. They are not located in hypervariable regions, and most primers are conserved across the genus. A single PCR per sample multiplexed for six loci yielded 45 alleles in 911 samples. Discussion: The protocol allows efficient genotyping of many samples. The cpSSR loci are too variable for Pinus phylogenies but are useful for the study of genetic structure within and among populations. The multiplex method could easily be extended to other plant groups by choosing primers for cpSSR loci in a plastome alignment for the target group.

A SYSTEMATIC SEARCH FOR COROTATING INTERACTION REGIONS IN APPARENTLY SINGLE GALACTIC WOLF-RAYET STARS. II. A GLOBAL VIEW OF THE WIND VARIABILITY

International Nuclear Information System (INIS)

Chene, A.-N.; St-Louis, N.

2011-01-01

This study is the second part of a survey searching for large-scale spectroscopic variability in apparently single Wolf-Rayet (WR) stars. In a previous paper (Paper I), we described and characterized the spectroscopic variability level of 25 WR stars observable from the northern hemisphere and found 3 new candidates presenting large-scale wind variability, potentially originating from large-scale structures named corotating interaction regions (CIRs). In this second paper, we discuss an additional 39 stars observable from the southern hemisphere. For each star in our sample, we obtained 4-5 high-resolution spectra with a signal-to-noise ratio of ∼100 and determined its variability level using the approach described in Paper I. In total, 10 new stars are found to show large-scale spectral variability of which 7 present CIR-type changes (WR 8, WR 44, WR55, WR 58, WR 61, WR 63, WR 100). Of the remaining stars, 20 were found to show small-amplitude changes and 9 were found to show no spectral variability as far as can be concluded from the data on hand. Also, we discuss the spectroscopic variability level of all single galactic WR stars that are brighter than v ∼ 12.5, and some WR stars with 12.5 < v ≤ 13.5, i.e., all the stars presented in our two papers and four more stars for which spectra have already been published in the literature. We find that 23/68 stars (33.8%) present large-scale variability, but only 12/54 stars (∼22.1%) are potentially of CIR type. Also, we find that 31/68 stars (45.6%) only show small-scale variability, most likely due to clumping in the wind. Finally, no spectral variability is detected based on the data on hand for 14/68 (20.6%) stars. Interestingly, the variability with the highest amplitude also has the widest mean velocity dispersion.

Environmental variation partitioned into separate heritable components

DEFF Research Database (Denmark)

Ørsted, Michael; Rohde, Palle Duun; Hoffmann, Ary A

2018-01-01

Trait variation is normally separated into genetic and environmental components, yet genetic factors also control the expression of environmental variation, encompassing plasticity across environmental gradients and within-environment responses. We defined four components of environmental variation......: plasticity across environments, variability in plasticity, variation within environments, and differences in within-environment variation across environments. We assessed these components for cold tolerance across five rearing temperatures using the Drosophila melanogaster Genetic Reference Panel (DGRP...

Ladder variational autoencoders

DEFF Research Database (Denmark)

Sønderby, Casper Kaae; Raiko, Tapani; Maaløe, Lars

2016-01-01

Variational autoencoders are powerful models for unsupervised learning. However deep models with several layers of dependent stochastic variables are difficult to train which limits the improvements obtained using these highly expressive models. We propose a new inference model, the Ladder...... Variational Autoencoder, that recursively corrects the generative distribution by a data dependent approximate likelihood in a process resembling the recently proposed Ladder Network. We show that this model provides state of the art predictive log-likelihood and tighter log-likelihood lower bound compared...

Ladder Variational Autoencoder

DEFF Research Database (Denmark)

Sønderby, Casper Kaae; Raiko, Tapani; Maaløe, Lars

2016-01-01

Variational autoencoders are powerful models for unsupervised learning. However deep models with several layers of dependent stochastic variables are difficult to train which limits the improvements obtained using these highly expressive models. We propose a new inference model, the Ladder...... Variational Autoencoder, that recursively corrects the generative distribution by a data dependent approximate likelihood in a process resembling the recently proposed Ladder Network. We show that this model provides state of the art predictive log-likelihood and tighter log-likelihood lower bound compared...

Effects of Parkinson’s Disease on Fundamental Frequency Variability in Running Speech

Science.gov (United States)

Bowen, Leah K.; Hands, Gabrielle L.; Pradhan, Sujata; Stepp, Cara E.

2013-01-01

In Parkinson’s Disease (PD), qualitative speech changes such as decreased variation in pitch and loudness are common, but quantitative vocal changes are not well documented. The variability of fundamental frequency (F0) in 32 individuals (23 male) with PD both ON and OFF levodopa medication was compared with 32 age-matched healthy controls (23 male). Participants read a single paragraph and estimates of fundamental frequency (F0) variability were determined for the entire reading passage as well as for the first and last sentences of the passage separately. F0 variability was significantly increased in controls relative to both PD groups and PD patients showed significantly higher F0 variability while ON medication relative to OFF. No significant effect of group was seen in the change in F0 variability from the beginning to the end of the reading passage. Female speakers were found to have higher F0 variability than males. F0 variability was both significantly reduced in PD relative to controls and significantly increased in patients with PD during use of dopaminergic medications. F0 variability changes over the course of reading a paragraph may not be indicative of PD but rather dependent on non-disease factors such as the linguistic characteristics of the text. PMID:25838754

Optical variability of the medium-bright quasar sample

International Nuclear Information System (INIS)

Huang, K.; Mitchell, K.J.; Usher, P.D.

1990-01-01

A variability study of the 32-member Medium-Bright Quasar Sample is reported. It is found that the star US 1953 has undergone a noticeable variation in the course of 26 hr. Apparent variations in the extragalactic object US 3498 may be illusory, owing to its partially resolved appearance. No other evidence for variability was detected. 34 refs

Variable setpoint as a relaxing component in physiological control.

Science.gov (United States)

Risvoll, Geir B; Thorsen, Kristian; Ruoff, Peter; Drengstig, Tormod

2017-09-01

Setpoints in physiology have been a puzzle for decades, and especially the notion of fixed or variable setpoints have received much attention. In this paper, we show how previously presented homeostatic controller motifs, extended with saturable signaling kinetics, can be described as variable setpoint controllers. The benefit of a variable setpoint controller is that an observed change in the concentration of the regulated biochemical species (the controlled variable) is fully characterized, and is not considered a deviation from a fixed setpoint. The variation in this biochemical species originate from variation in the disturbances (the perturbation), and thereby in the biochemical species representing the controller (the manipulated variable). Thus, we define an operational space which is spanned out by the combined high and low levels of the variations in (1) the controlled variable, (2) the manipulated variable, and (3) the perturbation. From this operational space, we investigate whether and how it imposes constraints on the different motif parameters, in order for the motif to represent a mathematical model of the regulatory system. Further analysis of the controller's ability to compensate for disturbances reveals that a variable setpoint represents a relaxing component for the controller, in that the necessary control action is reduced compared to that of a fixed setpoint controller. Such a relaxing component might serve as an important property from an evolutionary point of view. Finally, we illustrate the principles using the renal sodium and aldosterone regulatory system, where we model the variation in plasma sodium as a function of salt intake. We show that the experimentally observed variations in plasma sodium can be interpreted as a variable setpoint regulatory system. © 2017 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of The Physiological Society and the American Physiological Society.

Effects of climate variability and functional changes on the interannual variation of the carbon balance in a temperate deciduous forest

DEFF Research Database (Denmark)

Wu, Jian; van der Linden, Leon; Lasslop, G.

2012-01-01

scale, direct climatic variability and changes in ecosystem functional properties regulated the IAV of the carbon balance at this site. Correlation analysis showed that the sensitivity of carbon fluxes to climatic variability was significantly higher at shorter than at longer time scales and changed...... seasonally. Ecosystem response anomalies implied that changes in the distribution of climate anomalies during the vegetation period will have stronger impacts on future ecosystem carbon balances than changes in average climate. We improved a published modelling approach which distinguishes the direct....... At the annual time scale as much as 80% of the IAV in NEE was attributed to the variation in photosynthesis and respiration related model parameters. Our results suggest that the observed decadal NEE trend at the investigated site was dominated by changes in ecosystem functioning. In general this study showed...

Carpological variability of almond (Prunus dulcis [Mill.] D.A. Webb cv Nonpareil) in a single orchard during seven consecutive harvests

Science.gov (United States)

A multi-year study was conducted in California’s San Joaquin Valley to examine variability of carpological characteristics of the popular ‘Nonpareil’ almond cultivar. Samples of ‘Nonpareil’ almond fruit were collected from a single orchard during seven consecutive harvests and evaluated for 19 spec...

Error variation in OSL palaeodose estimates from single aliquots of quartz: a factorial experiment

International Nuclear Information System (INIS)

Galbraith, R.F.; Roberts, R.G.; Yoshida, H.

2005-01-01

We use a factorial experiment to study systematic and random differences between measured OSL palaeodoses for a variety of quartz samples. These include samples that have absorbed either a large or small natural or laboratory-induced radiation dose, either with or without prior heating or bleaching. The systematic factors studied are the size of the test dose, the preheat temperature and the number of quartz grains in each multi-grain aliquot. Palaeodoses were estimated using a single-aliquot regenerative-dose protocol. The main parameter of interest is the amount of random variation, over and above that due to photon counting statistics, to be expected between estimates from aliquots that have received the same radiation dose. This over-dispersion is generally larger for natural samples than for artificially bleached ones, and it varies from about 1% in the most favourable cases to about 18% for small aliquots of a sample that had received a natural dose of about 46 Gy. The latter is comparable to the over-dispersion reported for single grains of natural quartz that are thought to have been well-bleached at the time of deposition. The factorial experiment also revealed a number of systematic effects. In particular, measured palaeodoses using a preheat temperature of 260 deg. C were systematically lower than those using 180 deg. C, by up to about 5% in some cases

Increased reaction time variability in attention-deficit hyperactivity disorder as a response-related phenomenon: evidence from single-trial event-related potentials.

Science.gov (United States)

Saville, Christopher W N; Feige, Bernd; Kluckert, Christian; Bender, Stephan; Biscaldi, Monica; Berger, Andrea; Fleischhaker, Christian; Henighausen, Klaus; Klein, Christoph

2015-07-01

Increased intra-subject variability (ISV) in reaction times (RTs) is a promising endophenotype for attention-deficit hyperactivity disorder (ADHD) and among the most robust hallmarks of the disorder. ISV has been assumed to represent an attentional deficit, either reflecting lapses in attention or increased neural noise. Here, we use an innovative single-trial event-related potential approach to assess whether the increased ISV associated with ADHD is indeed attributable to attention, or whether it is related to response-related processing. We measured electroencephalographic responses to working memory oddball tasks in patients with ADHD (N = 20, aged 11.3 ± 1.1) and healthy controls (N = 25, aged 11.7 ± 1.1), and analysed these data with a recently developed method of single-trial event-related potential analysis. Estimates of component latency variability were computed for the stimulus-locked and response-locked forms of the P3b and the lateralised readiness potential (LRP). ADHD patients showed significantly increased ISV in behavioural ISV. This increased ISV was paralleled by an increase in variability in response-locked event-related potential latencies, while variability in stimulus-locked latencies was equivalent between groups. This result held across the P3b and LRP. Latency of all components predicted RTs on a single-trial basis, confirming that all were relevant for speed of processing. These data suggest that the increased ISV found in ADHD could be associated with response-end, rather than stimulus-end processes, in contrast to prevailing conceptions about the endophenotype. This mental chronometric approach may also be useful for exploring whether the existing lack of specificity of ISV to particular psychiatric conditions can be improved upon. © 2014 Association for Child and Adolescent Mental Health.

Strongly coupled single-phase flow problems: Effects of density variation, hydrodynamic dispersion, and first order decay

Energy Technology Data Exchange (ETDEWEB)

Oldenburg, C.M.; Pruess, K. [Lawrence Berkeley Laboratory, Berkeley, CA (United States)

1995-03-01

We have developed TOUGH2 modules for strongly coupled flow and transport that include full hydrodynamic dispersion. T2DM models tow-dimensional flow and transport in systems with variable salinity, while T32DMR includes radionuclide transport with first-order decay of a parent-daughter chain of radionuclide components in variable salinity systems. T2DM has been applied to a variety of coupled flow problems including the pure solutal convection problem of Elder and the mixed free and forced convection salt-dome flow problem. In the Elder and salt-dome flow problems, density changes of up to 20% caused by brine concentration variations lead to strong coupling between the velocity and brine concentration fields. T2DM efficiently calculates flow and transport for these problems. We have applied T2DMR to the dispersive transport and decay of radionuclide tracers in flow fields with permeability heterogeneities and recirculating flows. Coupling in these problems occurs by velocity-dependent hydrodynamic dispersion. Our results show that the maximum daughter species concentration may occur fully within a recirculating or low-velocity region. In all of the problems, we observe very efficient handling of the strongly coupled flow and transport processes.

Swelling variability of reference steels in HVEM studies

International Nuclear Information System (INIS)

Garner, F.A.; Mastel, B.

1975-09-01

A series of low-fluence electron irradiation experiments (0-15 dpa) were conducted on 316 stainless steels to explore the effects of the following variables: heat variations, FTR duct vs tubes, fabrication, annealing, Si content. Conclusions: the swelling rate became constant (max 1.3 percent/dpa) in all irradiations after an incubation period, which is variable. There is no difference in the steady-state swelling rate between various FTR heats, for annealing temperature variations, or for variation of Si content from 0.4 to 2 percent

Development and Testing of a Variable Conductance Thermal Acquisition, Transport, and Switching System

Science.gov (United States)

Bugby, David C.; Farmer, Jeffery T.; Stouffer, Charles J.

2013-01-01

This paper describes the development and testing of a scalable thermal management architecture for instruments, subsystems, or systems that must operate in severe space environments with wide variations in sink temperature. The architecture involves a serial linkage of one or more hot-side variable conductance heat pipes (VCHPs) to one or more cold-side loop heat pipes (LHPs). The VCHPs provide wide area heat acquisition, limited distance thermal transport, modest against gravity pumping, concentrated LHP startup heating, and high switching ratio variable conductance operation. The LHPs provide localized heat acquisition, long distance thermal transport, significant against gravity pumping, and high switching ratio variable conductance operation. The single-VCHP, single-LHP system described herein was developed to maintain thermal control of a small robotic lunar lander throughout the lunar day-night thermal cycle. It is also applicable to other variable heat rejection space missions in severe environments. Operationally, despite a 60-70% gas blocked VCHP condenser during ON testing, the system was still able to provide 2-4 W/K ON conductance, 0.01 W/K OFF conductance, and an end-to-end switching ratio of 200-400. The paper provides a detailed analysis of VCHP condenser performance, which quantified the gas blockage situation. Future multi-VCHP/multi-LHP thermal management system concepts that provide power/transport length scalability are also discussed.

Shark Variable New Antigen Receptor (VNAR Single Domain Antibody Fragments: Stability and Diagnostic Applications

Directory of Open Access Journals (Sweden)

Stewart Nuttall

2013-01-01

Full Text Available The single variable new antigen receptor domain antibody fragments (VNARs derived from shark immunoglobulin new antigen receptor antibodies (IgNARs represent some of the smallest known immunoglobulin-based protein scaffolds. As single domains, they demonstrate favorable size and cryptic epitope recognition properties, making them attractive in diagnosis and therapy of numerous disease states. Here, we examine the stability of VNAR domains with a focus on a family of VNARs specific for apical membrane antigen 1 (AMA-1 from Plasmodium falciparum. The VNARs are compared to traditional monoclonal antibodies (mAbs in liquid, lyophilized and immobilized nitrocellulose formats. When maintained in various formats at 45 °C, VNARs have improved stability compared to mAbs for periods of up to four weeks. Using circular dichroism spectroscopy we demonstrate that VNAR domains are able to refold following heating to 80 °C. We also demonstrate that VNAR domains are stable during incubation under potential in vivo conditions such as stomach acid, but not to the protease rich environment of murine stomach scrapings. Taken together, our results demonstrate the suitability of shark VNAR domains for various diagnostic platforms and related applications.

A set of plastid loci for use in multiplex fragment length genotyping for intraspecific variation in Pinus (Pinaceae)1

Science.gov (United States)

Wofford, Austin M.; Finch, Kristen; Bigott, Adam; Willyard, Ann

2014-01-01

• Premise of the study: Recently released Pinus plastome sequences support characterization of 15 plastid simple sequence repeat (cpSSR) loci originally published for P. contorta and P. thunbergii. This allows selection of loci for single-tube PCR multiplexed genotyping in any subsection of the genus. • Methods: Unique placement of primers and primer conservation across the genus were investigated, and a set of six loci were selected for single-tube multiplexing. We compared interspecific variation between cpSSRs and nucleotide sequences of ycf1 and tested intraspecific variation for cpSSRs using 911 samples in the P. ponderosa species complex. • Results: The cpSSR loci contain mononucleotide and complex repeats with additional length variation in flanking regions. They are not located in hypervariable regions, and most primers are conserved across the genus. A single PCR per sample multiplexed for six loci yielded 45 alleles in 911 samples. • Discussion: The protocol allows efficient genotyping of many samples. The cpSSR loci are too variable for Pinus phylogenies but are useful for the study of genetic structure within and among populations. The multiplex method could easily be extended to other plant groups by choosing primers for cpSSR loci in a plastome alignment for the target group. PMID:25202625

Quantifying intrinsic and extrinsic variability in stochastic gene expression models.

Science.gov (United States)

Singh, Abhyudai; Soltani, Mohammad

2013-01-01

Genetically identical cell populations exhibit considerable intercellular variation in the level of a given protein or mRNA. Both intrinsic and extrinsic sources of noise drive this variability in gene expression. More specifically, extrinsic noise is the expression variability that arises from cell-to-cell differences in cell-specific factors such as enzyme levels, cell size and cell cycle stage. In contrast, intrinsic noise is the expression variability that is not accounted for by extrinsic noise, and typically arises from the inherent stochastic nature of biochemical processes. Two-color reporter experiments are employed to decompose expression variability into its intrinsic and extrinsic noise components. Analytical formulas for intrinsic and extrinsic noise are derived for a class of stochastic gene expression models, where variations in cell-specific factors cause fluctuations in model parameters, in particular, transcription and/or translation rate fluctuations. Assuming mRNA production occurs in random bursts, transcription rate is represented by either the burst frequency (how often the bursts occur) or the burst size (number of mRNAs produced in each burst). Our analysis shows that fluctuations in the transcription burst frequency enhance extrinsic noise but do not affect the intrinsic noise. On the contrary, fluctuations in the transcription burst size or mRNA translation rate dramatically increase both intrinsic and extrinsic noise components. Interestingly, simultaneous fluctuations in transcription and translation rates arising from randomness in ATP abundance can decrease intrinsic noise measured in a two-color reporter assay. Finally, we discuss how these formulas can be combined with single-cell gene expression data from two-color reporter experiments for estimating model parameters.

Partitioning sources of variation in vertebrate species richness

Science.gov (United States)

Boone, R.B.; Krohn, W.B.

2000-01-01

Aim: To explore biogeographic patterns of terrestrial vertebrates in Maine, USA using techniques that would describe local and spatial correlations with the environment. Location: Maine, USA. Methods: We delineated the ranges within Maine (86,156 km2) of 275 species using literature and expert review. Ranges were combined into species richness maps, and compared to geomorphology, climate, and woody plant distributions. Methods were adapted that compared richness of all vertebrate classes to each environmental correlate, rather than assessing a single explanatory theory. We partitioned variation in species richness into components using tree and multiple linear regression. Methods were used that allowed for useful comparisons between tree and linear regression results. For both methods we partitioned variation into broad-scale (spatially autocorrelated) and fine-scale (spatially uncorrelated) explained and unexplained components. By partitioning variance, and using both tree and linear regression in analyses, we explored the degree of variation in species richness for each vertebrate group that Could be explained by the relative contribution of each environmental variable. Results: In tree regression, climate variation explained richness better (92% of mean deviance explained for all species) than woody plant variation (87%) and geomorphology (86%). Reptiles were highly correlated with environmental variation (93%), followed by mammals, amphibians, and birds (each with 84-82% deviance explained). In multiple linear regression, climate was most closely associated with total vertebrate richness (78%), followed by woody plants (67%) and geomorphology (56%). Again, reptiles were closely correlated with the environment (95%), followed by mammals (73%), amphibians (63%) and birds (57%). Main conclusions: Comparing variation explained using tree and multiple linear regression quantified the importance of nonlinear relationships and local interactions between species

Living alone: exploring variations in single motherhood and child ...

African Journals Online (AJOL)

Two specifications were fitted to analyze the effect of single mother characteristics on child health using binomial logistic regression. The result of unadjusted and adjusted models indicates that never married, cohabiting, are important correlates of child health. When adjusted for covariates, the effect of single motherhood on ...

Protecting chips against hold time violations due to variability

CERN Document Server

Neuberger, Gustavo; Reis, Ricardo

2013-01-01

With the development of Very-Deep Sub-Micron technologies, process variability is becoming increasingly important and is a very important issue in the design of complex circuits. Process variability is the statistical variation of process parameters, meaning that these parameters do not have always the same value, but become a random variable, with a given mean value and standard deviation. This effect can lead to several issues in digital circuit design.The logical consequence of this parameter variation is that circuit characteristics, as delay and power, also become random variables. Becaus

[Hydrologic variability and sensitivity based on Hurst coefficient and Bartels statistic].

Science.gov (United States)

Lei, Xu; Xie, Ping; Wu, Zi Yi; Sang, Yan Fang; Zhao, Jiang Yan; Li, Bin Bin

2018-04-01

Due to the global climate change and frequent human activities in recent years, the pure stochastic components of hydrological sequence is mixed with one or several of the variation ingredients, including jump, trend, period and dependency. It is urgently needed to clarify which indices should be used to quantify the degree of their variability. In this study, we defined the hydrological variability based on Hurst coefficient and Bartels statistic, and used Monte Carlo statistical tests to test and analyze their sensitivity to different variants. When the hydrological sequence had jump or trend variation, both Hurst coefficient and Bartels statistic could reflect the variation, with the Hurst coefficient being more sensitive to weak jump or trend variation. When the sequence had period, only the Bartels statistic could detect the mutation of the sequence. When the sequence had a dependency, both the Hurst coefficient and the Bartels statistics could reflect the variation, with the latter could detect weaker dependent variations. For the four variations, both the Hurst variability and Bartels variability increased with the increases of variation range. Thus, they could be used to measure the variation intensity of the hydrological sequence. We analyzed the temperature series of different weather stations in the Lancang River basin. Results showed that the temperature of all stations showed the upward trend or jump, indicating that the entire basin had experienced warming in recent years and the temperature variability in the upper and lower reaches was much higher. This case study showed the practicability of the proposed method.

Variational Histogram Equalization for Single Color Image Defogging

Directory of Open Access Journals (Sweden)

Li Zhou

2016-01-01

Full Text Available Foggy images taken in the bad weather inevitably suffer from contrast loss and color distortion. Existing defogging methods merely resort to digging out an accurate scene transmission in ignorance of their unpleasing distortion and high complexity. Different from previous works, we propose a simple but powerful method based on histogram equalization and the physical degradation model. By revising two constraints in a variational histogram equalization framework, the intensity component of a fog-free image can be estimated in HSI color space, since the airlight is inferred through a color attenuation prior in advance. To cut down the time consumption, a general variation filter is proposed to obtain a numerical solution from the revised framework. After getting the estimated intensity component, it is easy to infer the saturation component from the physical degradation model in saturation channel. Accordingly, the fog-free image can be restored with the estimated intensity and saturation components. In the end, the proposed method is tested on several foggy images and assessed by two no-reference indexes. Experimental results reveal that our method is relatively superior to three groups of relevant and state-of-the-art defogging methods.

Biological variation of total prostate-specific antigen

DEFF Research Database (Denmark)

Söletormos, Georg; Semjonow, Axel; Sibley, Paul E C

2005-01-01

BACKGROUND: The objectives of this study were to determine whether a single result for total prostate-specific antigen (tPSA) can be used confidently to guide the need for prostate biopsy and by how much serial tPSA measurements must differ to be significant. tPSA measurements include both...... analytical and biological components of variation. The European Group on Tumor Markers conducted a literature survey to determine both the magnitude and impact of biological variation on single, the mean of replicate, and serial tPSA measurements. METHODS: The survey yielded 27 studies addressing the topic......, and estimates for the biological variation of tPSA could be derived from 12 of these studies. RESULTS: The mean biological variation was 20% in the concentration range 0.1-20 microg/L for men over 50 years. The biological variation means that the one-sided 95% confidence interval (CI) of the dispersion...

Infrared photometry of cataclysmic variables. II - Evidence for ellipsoidal variations in CW MoN, X Leo, IP Peg, and AF CaM

Science.gov (United States)

Szkody, P.; Mateo, M.

1986-08-01

Broadband H or K light curves of the dwarf novae CM Mon, X Leo, IP Peg, and AF Cam reveal variations that can be attributed to ellipsoidal modulation of the secondaries in these systems. The present data imply orbital periods of 4.23 + or - 0.01 hr for CW Mon and 5.0 + or - 0.1 hr for X Leo. The high-amplitude ellipsoidal modulation of the secondary of CW Mon implies a large orbital inclination. The interpretation of the low-amplitude variability seen in X Leo is complicated by details in its light curve and a recent determination of its orbital period by Shafter and Harkness (1986) which differs significantly from the period inferred from the present observations. The light variations of the eclipsing system IP Peg are interpreted as showing a 0.2 mag ellipsoidal variation from the secondary superposed on a deep eclipse of the IR light of the white dwarf and hotspot. AF Cam shows marginal evidence for a low-amplitude variation implying a very short orbital period of 76 min. IR colors of SS Aur, AH Eri, and IR Gem as well as the above four objects are used to place limits on the properties of the secondaries and the distances to these systems.

Variability of rainfall over small areas

Science.gov (United States)

Runnels, R. C.

1983-01-01

A preliminary investigation was made to determine estimates of the number of raingauges needed in order to measure the variability of rainfall in time and space over small areas (approximately 40 sq miles). The literature on rainfall variability was examined and the types of empirical relationships used to relate rainfall variations to meteorological and catchment-area characteristics were considered. Relations between the coefficient of variation and areal-mean rainfall and area have been used by several investigators. These parameters seemed reasonable ones to use in any future study of rainfall variations. From a knowledge of an appropriate coefficient of variation (determined by the above-mentioned relations) the number rain gauges needed for the precise determination of areal-mean rainfall may be calculated by statistical estimation theory. The number gauges needed to measure the coefficient of variation over a 40 sq miles area, with varying degrees of error, was found to range from 264 (10% error, mean precipitation = 0.1 in) to about 2 (100% error, mean precipitation = 0.1 in).

The influence of anthropogenic aerosol on multi-decadal variations of historical global climate

International Nuclear Information System (INIS)

Wilcox, L J; Highwood, E J; Dunstone, N J

2013-01-01

Analysis of single forcing runs from CMIP5 (the fifth Coupled Model Intercomparison Project) simulations shows that the mid-twentieth century temperature hiatus, and the coincident decrease in precipitation, is likely to have been influenced strongly by anthropogenic aerosol forcing. Models that include a representation of the indirect effect of aerosol better reproduce inter-decadal variability in historical global-mean near-surface temperatures, particularly the cooling in the 1950s and 1960s, compared to models with representation of the aerosol direct effect only. Models with the indirect effect also show a more pronounced decrease in precipitation during this period, which is in better agreement with observations, and greater inter-decadal variability in the inter-hemispheric temperature difference. This study demonstrates the importance of representing aerosols, and their indirect effects, in general circulation models, and suggests that inter-model diversity in aerosol burden and representation of aerosol–cloud interaction can produce substantial variation in simulations of climate variability on multi-decadal timescales. (letter)

Resolving meso-scale seabed variability using reflection measurements from an autonomous underwater vehicle.

Science.gov (United States)

Holland, Charles W; Nielsen, Peter L; Dettmer, Jan; Dosso, Stan

2012-02-01

Seabed geoacoustic variability is driven by geological processes that occur over a wide spectrum of space-time scales. While the acoustics community has some understanding of horizontal fine-scale geoacoustic variability, less than O(10(0)) m, and large-scale variability, greater than O(10(3)) m, there is a paucity of data resolving the geoacoustic meso-scale O(10(0)-10(3)) m. Measurements of the meso-scale along an ostensibly "benign" portion of the outer shelf reveal three classes of variability. The first class was expected and is due to horizontal variability of layer thicknesses: this was the only class that could be directly tied to seismic reflection data. The second class is due to rapid changes in layer properties and/or boundaries, occurring over scales of meters to hundreds of meters. The third class was observed as rapid variations of the angle/frequency dependent reflection coefficient within a single observation and is suggestive of variability at scales of meter or less. Though generally assumed to be negligible in acoustic modeling, the second and third classes are indicative of strong horizontal geoacoustic variability within a given layer. The observations give early insight into possible effects of horizontal geoacoustic variability on long-range acoustic propagation and reverberation. © 2012 Acoustical Society of America

Seasonal Variability in European Radon Measurements

Science.gov (United States)

Groves-Kirkby, C. J.; Denman, A. R.; Phillips, P. S.; Crockett, R. G. M.; Sinclair, J. M.

2009-04-01

In temperate climates, domestic radon concentration levels are generally seasonally dependent, the level in the home reflecting the convolution of two time-dependent functions. These are the source soil-gas radon concentration itself, and the principal force driving radon into the building from the soil, namely the pressure-difference between interior and exterior environment. While the meteorological influence can be regarded as relatively uniform on a European scale, its variability being defined largely by the influence of North-Atlantic weather systems, soil-gas radon is generally more variable as it is essentially geologically dependent. Seasonal variability of domestic radon concentration can therefore be expected to exhibit geographical variability, as is indeed the case. To compensate for the variability of domestic radon levels when assessing the long term radon health risks, the results of individual short-term measurements are generally converted to equivalent mean annual levels by application of a Seasonal Correction Factor (SCF). This is a multiplying factor, typically derived from measurements of a large number of homes, applied to the measured short-term radon concentration to provide a meaningful annual mean concentration for dose-estimation purposes. Following concern as to the universal applicability of a single SCF set, detailed studies in both the UK and France have reported location-specific SCF sets for different regions of each country. Further results indicate that SCFs applicable to the UK differ significantly from those applicable elsewhere in Europe and North America in both amplitude and phase, supporting the thesis that seasonal variability in indoor radon concentration cannot realistically be compensated for by a single national or international SCF scheme. Published data characterising the seasonal variability of European national domestic radon concentrations, has been collated and analysed, with the objective of identifying

X-ray spectral variability of Seyfert 2 galaxies

Science.gov (United States)

Hernández-García, L.; Masegosa, J.; González-Martín, O.; Márquez, I.

2015-07-01

Context. Variability across the electromagnetic spectrum is a property of active galactic nuclei (AGN) that can help constrain the physical properties of these galaxies. Nonetheless, the way in which the changes happen and whether they occur in the same way in every AGN are still open questions. Aims: This is the third in a series of papers with the aim of studying the X-ray variability of different families of AGN. The main purpose of this work is to investigate the variability pattern(s) in a sample of optically selected Seyfert 2 galaxies. Methods: We use the 26 Seyfert 2s in the Véron-Cetty and Véron catalog with data available from Chandra and/or XMM-Newton public archives at different epochs, with timescales ranging from a few hours to years. All the spectra of the same source were simultaneously fitted, and we let different parameters vary in the model. Whenever possible, short-term variations from the analysis of the light curves and/or long-term UV flux variations were studied. We divided the sample into Compton-thick and Compton-thin candidates to account for the degree of obscuration. When transitions between Compton-thick and thin were obtained for different observations of the same source, we classified it as a changing-look candidate. Results: Short-term variability at X-rays was studied in ten cases, but variations are not found. From the 25 analyzed sources, 11 show long-term variations. Eight (out of 11) are Compton-thin, one (out of 12) is Compton-thick, and the two changing-look candidates are also variable. The main driver for the X-ray changes is related to the nuclear power (nine cases), while variations at soft energies or related to absorbers at hard X-rays are less common, and in many cases these variations are accompanied by variations in the nuclear continuum. At UV frequencies, only NGC 5194 (out of six sources) is variable, but the changes are not related to the nucleus. We report two changing-look candidates, MARK 273 and NGC 7319

Noninvasive pulse pressure variation and stroke volume variation to predict fluid responsiveness at multiple thresholds : a prospective observational study

NARCIS (Netherlands)

Vos, Jaap Jan; Poterman, Marieke; Papineau Salm, Pieternel; Van Amsterdam, Kai; Struys, Michel M. R. F.; Scheeren, Thomas W. L.; Kalmar, Alain F.

2015-01-01

Pulse pressure variation (PPV) and stroke volume variation (SVV) are dynamic preload variables that can be measured noninvasively to assess fluid responsiveness (FR) in anesthetized patients with mechanical ventilation. Few studies have examined the effectiveness of predicting FR according to the

Rapid variability of extragalactic radio sources

Energy Technology Data Exchange (ETDEWEB)

Quirrenbach, A.; Witzel, A.; Krichbaum, T.; Hummel, C.A.; Alberdi, A.; Schalinski, C.

1989-02-02

Since its discovery more than 20 years ago, variability of extragalactic radio sources on timescales of weeks to years has been the subject of many investigations. We have examined the variability of these sources on timescales of hours at wavelengths of 6 and 11 cm using the 100-m telescope of the Max-Planck-Institut fuer Radioastronomie and report the results for two sources. The quasar QSO0917 + 62 showed variations with amplitudes of up to 23% in /similar to/ 24 hours, which were correlated at the two wavelengths; in the BL Lac object 0716 + 71 we found variations with amplitudes of 7-11%. We discuss intrinsic effects, gravitational lensing and scattering in the interstellar medium as possible explanations for rapid radio variability.

Rapid variability of extragalactic radio sources

International Nuclear Information System (INIS)

Quirrenbach, A.; Witzel, A.; Krichbaum, T.; Hummel, C.A.; Alberdi, A.; Schalinski, C.

1989-01-01

Since its discovery more than 20 years ago, variability of extragalactic radio sources on timescales of weeks to years has been the subject of many investigations. We have examined the variability of these sources on timescales of hours at wavelengths of 6 and 11 cm using the 100-m telescope of the Max-Planck-Institut fuer Radioastronomie and report the results for two sources. The quasar QSO0917 + 62 showed variations with amplitudes of up to 23% in ∼ 24 hours, which were correlated at the two wavelengths; in the BL Lac object 0716 + 71 we found variations with amplitudes of 7-11%. We discuss intrinsic effects, gravitational lensing and scattering in the interstellar medium as possible explanations for rapid radio variability. (author)

Utilisation of symmetrical components in a communication-based protection for loop MV feeders with variable short-circuit power

DEFF Research Database (Denmark)

Ciontea, Catalin-Iosif; Bak, Claus Leth; Blaabjerg, Frede

2018-01-01

-circuit power is presented. It relies on utilisation of symmetrical components of the short-circuit currents and on communication between the protection relays. The proposed method addresses the Single Phase to Ground (SPG) faults occurring in directly grounded distribution networks, with focus on closed......Variability of the available short-circuit power also implies variation of the fault level, which can potentially cause several protection problems in the electric networks. In this paper, a novel protection method that is insensitive to the fault level changes caused by variable short......-loop Medium Voltage (MV) feeders. Case studies are presented, which demonstrate that the proposed protection scheme is capable of effectively detecting the SPG faults in closed-loop feeders with variable short-circuit power....

Genetic variability, correlation and path coefficients of yield and its components analysis in pumpkin (Cucurbita moschata Duch Ex Poir

Directory of Open Access Journals (Sweden)

GM Mohsin

2017-06-01

Full Text Available Genetic variability, correlation and path coefficient were studied for yield and yield component traits in twenty one diverse genotypes of pumpkin. Highest genotypic coefficient of variation was recorded for fruit length (cm, single fruit weight (kg, Brix (% and yield per plant (kg. Heritability estimates in broad sense were higher for almost all the characters. The characters namely, fruit length, single fruit weight, yield per plant and brix% had high genotypic coefficient of variation coupled with heritability gave high genetic advance expressed as percentage of mean ranged from 76.84 to 96.06 which indicated that these characters were less influenced by environment confirming additive gene action, and therefore, selection of these characters would be more effective for yield improvement of pumpkins. Total six traits likely fruit length, fruit diameter, flesh thickness, single fruit weight and number of fruits per plant were positively and significantly associated with yield per plant. Path coefficient analysis also revealed maximum contribution of single fruit weight (0.869 to yield and this was followed by the contribution of number of fruit per plant (0.527 at genotypic level.

Characterization of cyclic deformation behaviour of tempered and quenched 42CrMoS4 at single step and variable amplitude loading

International Nuclear Information System (INIS)

Schelp, M.; Eifler, D.

2000-01-01

Cyclic single steps tests were performed on tempered and quenched specimens of the steel 42CrMoS4. Strain, temperature and electrical resistance measurements yielded an empirical prediction of fatigue life according to Coffin, Manson and Morrow. All measured values are based on physical processes and therefore show a strong interaction. A new testing procedure was developed permitting hysteresis measurements to be used for the characterization and description of fatigue behaviour under variable amplitude loading. The basic idea is to combine fatigue tests with any kind of load spectrum with single step tests. This offers the possibility to apply lifetime prediction methods normally used for single step tests for those with random or service loading. (orig.)

Influences of spatial and temporal variation on fish-habitat relationships defined by regression quantiles

Science.gov (United States)

Dunham, J.B.; Cade, B.S.; Terrell, J.W.

2002-01-01

We used regression quantiles to model potentially limiting relationships between the standing crop of cutthroat trout Oncorhynchus clarki and measures of stream channel morphology. Regression quantile models indicated that variation in fish density was inversely related to the width:depth ratio of streams but not to stream width or depth alone. The spatial and temporal stability of model predictions were examined across years and streams, respectively. Variation in fish density with width:depth ratio (10th-90th regression quantiles) modeled for streams sampled in 1993-1997 predicted the variation observed in 1998-1999, indicating similar habitat relationships across years. Both linear and nonlinear models described the limiting relationships well, the latter performing slightly better. Although estimated relationships were transferable in time, results were strongly dependent on the influence of spatial variation in fish density among streams. Density changes with width:depth ratio in a single stream were responsible for the significant (P 80th). This suggests that stream-scale factors other than width:depth ratio play a more direct role in determining population density. Much of the variation in densities of cutthroat trout among streams was attributed to the occurrence of nonnative brook trout Salvelinus fontinalis (a possible competitor) or connectivity to migratory habitats. Regression quantiles can be useful for estimating the effects of limiting factors when ecological responses are highly variable, but our results indicate that spatiotemporal variability in the data should be explicitly considered. In this study, data from individual streams and stream-specific characteristics (e.g., the occurrence of nonnative species and habitat connectivity) strongly affected our interpretation of the relationship between width:depth ratio and fish density.

Evaluation of a new paleosecular variation activity index as a diagnostic tool for geomagnetic field variations

Science.gov (United States)

Panovska, Sanja; Constable, Catherine

2015-04-01

Geomagnetic indices like Dst, K and A, have been used since the early twentieth century to characterize activity in the external part of the modern geomagnetic field and as a diagnostic for space weather. These indices reflect regional and global activity and serve as a proxy for associated physical processes. However, no such tools are yet available for the internal geomagnetic field driven by the geodynamo in Earth's liquid outer core. To some extent this reflects limited spatial and temporal sampling for longer timescales associated with paleomagnetic secular variation, but recent efforts in both paleomagnetic data gathering and modeling activity suggest that longer term characterization of the internal geomagnetic weather/climate and its variability would be useful. Specifically, we propose an index for activity in paleosecular variation, useful as both a local and global measure of field stability during so-called normal secular variation and as a means of identifying more extreme behavior associated with geomagnetic excursions and reversals. To date, geomagnetic excursions have been identified by virtual geomagnetic poles (VGPs) deviating more than some conventional limit from the geographic pole (often 45 degrees), and/or by periods of significant intensity drops below some critical value, for example 50% of the present-day field. We seek to establish a quantitative definition of excursions in paleomagnetic records by searching for synchronous directional deviations and lows in relative paleointensity. We combine paleointensity variations with deviations from the expected geocentric axial dipole (GAD) inclination in a single parameter, which we call the paleosecular variation (PSV) activity index. This new diagnostic can be used on any geomagnetic time series (individual data records, model predictions, spherical harmonic coefficients, etc.) to characterize the level of paleosecular variation activity, find excursions, or even study incipient reversals

Stochastic process variation in deep-submicron CMOS circuits and algorithms

CERN Document Server

Zjajo, Amir

2014-01-01

One of the most notable features of nanometer scale CMOS technology is the increasing magnitude of variability of the key device parameters affecting performance of integrated circuits. The growth of variability can be attributed to multiple factors, including the difficulty of manufacturing control, the emergence of new systematic variation-generating mechanisms, and most importantly, the increase in atomic-scale randomness, where device operation must be described as a stochastic process. In addition to wide-sense stationary stochastic device variability and temperature variation, existence of non-stationary stochastic electrical noise associated with fundamental processes in integrated-circuit devices represents an elementary limit on the performance of electronic circuits. In an attempt to address these issues, Stochastic Process Variation in Deep-Submicron CMOS: Circuits and Algorithms offers unique combination of mathematical treatment of random process variation, electrical noise and temperature and ne...

Weak solutions for nonlocal evolution variational inequalities involving gradient constraints and variable exponent

Directory of Open Access Journals (Sweden)

Mingqi Xiang

2013-04-01

Full Text Available In this article, we study a class of nonlocal quasilinear parabolic variational inequality involving $p(x$-Laplacian operator and gradient constraint on a bounded domain. Choosing a special penalty functional according to the gradient constraint, we transform the variational inequality to a parabolic equation. By means of Galerkin's approximation method, we obtain the existence of weak solutions for this equation, and then through a priori estimates, we obtain the weak solutions of variational inequality.

First-Passage-Time Distribution for Variable-Diffusion Processes

Science.gov (United States)

Barney, Liberty; Gunaratne, Gemunu H.

2017-05-01

First-passage-time distribution, which presents the likelihood of a stock reaching a pre-specified price at a given time, is useful in establishing the value of financial instruments and in designing trading strategies. First-passage-time distribution for Wiener processes has a single peak, while that for stocks exhibits a notable second peak within a trading day. This feature has only been discussed sporadically—often dismissed as due to insufficient/incorrect data or circumvented by conversion to tick time—and to the best of our knowledge has not been explained in terms of the underlying stochastic process. It was shown previously that intra-day variations in the market can be modeled by a stochastic process containing two variable-diffusion processes (Hua et al. in, Physica A 419:221-233, 2015). We show here that the first-passage-time distribution of this two-stage variable-diffusion model does exhibit a behavior similar to the empirical observation. In addition, we find that an extended model incorporating overnight price fluctuations exhibits intra- and inter-day behavior similar to those of empirical first-passage-time distributions.

MORPHOLOGICAL VARIATION AND TAXONOMY OF LEPIDOCOLAPTES ANGUSTIROSTRIS (VIEILLOT, 1818 (PASSERIFORMES: DENDROCOLAPTIDAE

Directory of Open Access Journals (Sweden)

SERGIO BOLÍVAR-LEGUIZAMÓN

2015-01-01

Full Text Available Lepidocolaptes angustirostris is a South American woodcreeper that inhabits predominantly open lowlands such as the Cerrado, Chaco and Caatinga. Eight subspecies are currently recognized based on plumage patterns and geographical distribution. However, a more detailed morphological analysis and taxonomic revision have not been done in this species. The objective of this study was to conduct a taxonomic revision of L. angustirostris using morphometrical and plumage character, and a Generalized Linear Models analyzes (GLM were elaborated to identify environmental variables that could account for this variation. We found a high level of intergradation among all named populations. The principal component analyzes show certain levels of morphological differentiation among the taxa, with a first component formed by bill characters (bill length, exposed and total culmen, and a second one that includes the bill width and the tarsus-metatarsus length. In the GLM analyzes, two climatic variables explain the geographical variation in the taxon, temperature seasonality and precipitation of warmest quarter. The ecogeographic rules of Bergmann and Gloger can be applied to this variation, and, more narrowly, the Allen's rule. Thus, the populations of the Narrow-billed Woodcreeper tend to be larger to the south of the distribution. We propose here that L. angustirostris is a single species, with no subordinate taxa. Any evidence analyzed here did not support the taxonomic validity of the proposed subspecies in the taxon. Despite colour-polymorphism identified in the plumage patterns, the high level of intergradation and the poor resolution of geographical boundaries did not support the splitting of this species.

Quantum confined Stark effects of single dopant in polarized hemispherical quantum dot: Two-dimensional finite difference approach and Ritz-Hassé variation method

Science.gov (United States)

El Harouny, El Hassan; Nakra Mohajer, Soukaina; Ibral, Asmaa; El Khamkhami, Jamal; Assaid, El Mahdi

2018-05-01

Eigenvalues equation of hydrogen-like off-center single donor impurity confined in polarized homogeneous hemispherical quantum dot deposited on a wetting layer, capped by insulated matrix and submitted to external uniform electric field is solved in the framework of the effective mass approximation. An infinitely deep potential is used to describe effects of quantum confinement due to conduction band offsets at surfaces where quantum dot and surrounding materials meet. Single donor ground state total and binding energies in presence of electric field are determined via two-dimensional finite difference approach and Ritz-Hassé variation principle. For the latter method, attractive coulomb correlation between electron and ionized single donor is taken into account in the expression of trial wave function. It appears that off-center single dopant binding energy, spatial extension and radial probability density are strongly dependent on hemisphere radius and single dopant position inside quantum dot. Influence of a uniform electric field is also investigated. It shows that Stark effect appears even for very small size dots and that single dopant energy shift is more significant when the single donor is near hemispherical surface.

Genetic Variations Associated with Vitamin A Status and Vitamin A Bioavailability

Directory of Open Access Journals (Sweden)

Patrick Borel

2017-03-01

Full Text Available Blood concentration of vitamin A (VA, which is present as different molecules, i.e., mainly retinol and provitamin A carotenoids, plus retinyl esters in the postprandial period after a VA-containing meal, is affected by numerous factors: dietary VA intake, VA absorption efficiency, efficiency of provitamin A carotenoid conversion to VA, VA tissue uptake, etc. Most of these factors are in turn modulated by genetic variations in genes encoding proteins involved in VA metabolism. Genome-wide association studies (GWAS and candidate gene association studies have identified single nucleotide polymorphisms (SNPs associated with blood concentrations of retinol and β-carotene, as well as with β-carotene bioavailability. These genetic variations likely explain, at least in part, interindividual variability in VA status and in VA bioavailability. However, much work remains to be done to identify all of the SNPs involved in VA status and bioavailability and to assess the possible involvement of other kinds of genetic variations, e.g., copy number variants and insertions/deletions, in these phenotypes. Yet, the potential usefulness of this area of research is exciting regarding the proposition of more personalized dietary recommendations in VA, particularly in populations at risk of VA deficiency.

Unit-specific calibration of Actigraph accelerometers in a mechanical setup - is it worth the effort? The effect on random output variation caused by technical inter-instrument variability in the laboratory and in the field

DEFF Research Database (Denmark)

Moeller, Niels C; Korsholm, Lars; Kristensen, Peter L

2008-01-01

BACKGROUND: Potentially, unit-specific in-vitro calibration of accelerometers could increase field data quality and study power. However, reduced inter-unit variability would only be important if random instrument variability contributes considerably to the total variation in field data. Therefor...

Dynamic Variables Fail to Predict Fluid Responsiveness in an Animal Model With Pericardial Effusion.

Science.gov (United States)

Broch, Ole; Renner, Jochen; Meybohm, Patrick; Albrecht, Martin; Höcker, Jan; Haneya, Assad; Steinfath, Markus; Bein, Berthold; Gruenewald, Matthias

2016-10-01

The reliability of dynamic and volumetric variables of fluid responsiveness in the presence of pericardial effusion is still elusive. The aim of the present study was to investigate their predictive power in a porcine model with hemodynamic relevant pericardial effusion. A single-center animal investigation. Twelve German domestic pigs. Pigs were studied before and during pericardial effusion. Instrumentation included a pulmonary artery catheter and a transpulmonary thermodilution catheter in the femoral artery. Hemodynamic variables like cardiac output (COPAC) and stroke volume (SVPAC) derived from pulmonary artery catheter, global end-diastolic volume (GEDV), stroke volume variation (SVV), and pulse-pressure variation (PPV) were obtained. At baseline, SVV, PPV, GEDV, COPAC, and SVPAC reliably predicted fluid responsiveness (area under the curve 0.81 [p = 0.02], 0.82 [p = 0.02], 0.74 [p = 0.07], 0.74 [p = 0.07], 0.82 [p = 0.02]). After establishment of pericardial effusion the predictive power of dynamic variables was impaired and only COPAC and SVPAC and GEDV allowed significant prediction of fluid responsiveness (area under the curve 0.77 [p = 0.04], 0.76 [p = 0.05], 0.83 [p = 0.01]) with clinically relevant changes in threshold values. In this porcine model, hemodynamic relevant pericardial effusion abolished the ability of dynamic variables to predict fluid responsiveness. COPAC, SVPAC, and GEDV enabled prediction, but their threshold values were significantly changed. Copyright © 2016 Elsevier Inc. All rights reserved.

A genome-wide, fine-scale map of natural pigmentation variation in Drosophila melanogaster.

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Héloïse Bastide

2013-06-01

Full Text Available Various approaches can be applied to uncover the genetic basis of natural phenotypic variation, each with their specific strengths and limitations. Here, we use a replicated genome-wide association approach (Pool-GWAS to fine-scale map genomic regions contributing to natural variation in female abdominal pigmentation in Drosophila melanogaster, a trait that is highly variable in natural populations and highly heritable in the laboratory. We examined abdominal pigmentation phenotypes in approximately 8000 female European D. melanogaster, isolating 1000 individuals with extreme phenotypes. We then used whole-genome Illumina sequencing to identify single nucleotide polymorphisms (SNPs segregating in our sample, and tested these for associations with pigmentation by contrasting allele frequencies between replicate pools of light and dark individuals. We identify two small regions near the pigmentation genes tan and bric-à-brac 1, both corresponding to known cis-regulatory regions, which contain SNPs showing significant associations with pigmentation variation. While the Pool-GWAS approach suffers some limitations, its cost advantage facilitates replication and it can be applied to any non-model system with an available reference genome.

A genome-wide, fine-scale map of natural pigmentation variation in Drosophila melanogaster.

Science.gov (United States)

Bastide, Héloïse; Betancourt, Andrea; Nolte, Viola; Tobler, Raymond; Stöbe, Petra; Futschik, Andreas; Schlötterer, Christian

2013-06-01

Various approaches can be applied to uncover the genetic basis of natural phenotypic variation, each with their specific strengths and limitations. Here, we use a replicated genome-wide association approach (Pool-GWAS) to fine-scale map genomic regions contributing to natural variation in female abdominal pigmentation in Drosophila melanogaster, a trait that is highly variable in natural populations and highly heritable in the laboratory. We examined abdominal pigmentation phenotypes in approximately 8000 female European D. melanogaster, isolating 1000 individuals with extreme phenotypes. We then used whole-genome Illumina sequencing to identify single nucleotide polymorphisms (SNPs) segregating in our sample, and tested these for associations with pigmentation by contrasting allele frequencies between replicate pools of light and dark individuals. We identify two small regions near the pigmentation genes tan and bric-à-brac 1, both corresponding to known cis-regulatory regions, which contain SNPs showing significant associations with pigmentation variation. While the Pool-GWAS approach suffers some limitations, its cost advantage facilitates replication and it can be applied to any non-model system with an available reference genome.

Insulin aspart pharmacokinetics: an assessment of its variability and underlying mechanisms.

Science.gov (United States)

Rasmussen, Christian Hove; Røge, Rikke Meldgaard; Ma, Zhulin; Thomsen, Maria; Thorisdottir, Rannveig Linda; Chen, Jian-Wen; Mosekilde, Erik; Colding-Jørgensen, Morten

2014-10-01

Insulin aspart (IAsp) is used by many diabetics as a meal-time insulin to control post-prandial glucose levels. As is the case with many other insulin types, the pharmacokinetics (PK), and consequently the pharmacodynamics (PD), is associated with clinical variability, both between and within individuals. The present article identifies the main physiological mechanisms that govern the PK of IAsp following subcutaneous administration and quantifies them in terms of their contribution to the overall variability. CT scanning data from Thomsen et al. (2012) are used to investigate and quantify the properties of the subcutaneous depot. Data from Brange et al. (1990) are used to determine the effects of insulin chemistry in subcutis on the absorption rate. Intravenous (i.v.) bolus and infusion PK data for human insulin are used to understand and quantify the systemic distribution and elimination (Pørksen et al., 1997; Sjöstrand et al., 2002). PK and PD profiles for type 1 diabetics from Chen et al. (2005) are analyzed to demonstrate the effects of IAsp antibodies in terms of bound and unbound insulin. PK profiles from Thorisdottir et al. (2009) and Ma et al. (2012b) are analyzed in the nonlinear mixed effects software Monolix® to determine the presence and effects of the mechanisms described in this article. The distribution of IAsp in the subcutaneous depot show an initial dilution of approximately a factor of two in a single experiment. Injected insulin hexamers exist in a chemical equilibrium with monomers and dimers, which depends strongly on the degree of dilution in subcutis, the presence of auxiliary substances, and a variety of other factors. Sensitivity to the initial dilution in subcutis can thus be a cause of some of the variability. Temporal variations in the PK are explained by variations in the subcutaneous blood flow. IAsp antibodies are found to be a large contributor to the variability of total insulin PK in a study by Chen et al. (2005), since only

Observed variability of summer precipitation pattern and extreme events in East China associated with variations of the East Asian summer monsoon: VARIABILITY OF SUMMER PRECIPITATION AND EXTREME EVENT IN EAST CHINA

Energy Technology Data Exchange (ETDEWEB)

Wang, Lei [School of Atmospheric Sciences, Nanjing University, China; Pacific Northwest National Laboratory, Richland WA USA; Qian, Yun [Pacific Northwest National Laboratory, Richland WA USA; Zhang, Yaocun [School of Atmospheric Sciences, Nanjing University, China; Zhao, Chun [Pacific Northwest National Laboratory, Richland WA USA; Leung, L. Ruby [Pacific Northwest National Laboratory, Richland WA USA; Huang, Anning [School of Atmospheric Sciences, Nanjing University, China; Xiao, Chuliang [Cooperative Institute for Limnology and Ecosystems Research, School of Natural Resources and Environment, University of Michigan, Ann Arbor MI USA

2015-11-09

This paper presents a comprehensive analysis of interannual and interdecadal variations of summer precipitation and precipitation-related extreme events in China associated with variations of the East Asian summer monsoon (EASM) from 1979-2012. A high-quality daily precipitation dataset covering 2287 weather stations in China is analyzed. Based on the precipitation pattern analysis using empirical orthogonal functions, three sub-periods of 1979-1992 (period I), 1993-1999 (period II) and 2000-2012 (period III) are identified to be representative of the precipitation variability. Similar significant variability of the extreme precipitation indices is found across four sub-regions in eastern China. The spatial patterns of summer mean precipitation, the number of days with daily rainfall exceeding 95th percentile precipitation (R95p) and the maximum number of consecutive wet days (CWD) anomalies are consistent, but opposite to that of maximum consecutive dry days (CDD) anomalies during the three sub-periods. However, the spatial patterns of hydroclimatic intensity (HY-INT) are notably different from that of the other three extreme indices, but highly correlated to the dry events. The changes of precipitation anomaly patterns are accompanied by the change of the EASM regime and the abrupt shift of the position of the west Pacific subtropical high around 1992/1993 and 1999/2000, respectively, which influence the moisture transport that contributes most to the precipitation anomalies. Lastly, the EASM intensity is linked to sea surface temperature anomaly over the tropical Indian and Pacific Ocean that influences deep convection over the oceans.

Work life and mental wellbeing of single and non-single working mothers in Scandinavia.

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Bull, Torill; Mittelmark, Maurice B

2009-08-01

This study examined levels and predictors of mental wellbeing in Scandinavian working single and non-single mothers, with a special focus on financial stress, job characteristics and work-family conflict. The European Social Survey Round 2 (2005) provided questionnaire data from 73 single and 432 non-single working mothers in Denmark, Sweden and Norway. Respondents answered questions about the outcome variables life satisfaction, happiness, and positive affect, and predictor variables financial stress, job characteristics, work-family conflict, and social support. Hierarchical multiple regression was used to assess the relationships between predictor variables and mental wellbeing outcomes. Single working mothers scored significantly lower on life satisfaction and happiness, but not on positive affect, than did non-single mothers. Financial stress was higher in the single mother group. There were no significant differences in levels of enriching or stressful job characteristics, or in levels of social support. While financial stress and work-family conflict were important predictors in both groups, the relationship between financial stress and wellbeing was far stronger in the single mother group. Confidant support was a significant predictor only in the single mother group, and social participation only in the non-single mothers group. This study suggests that the Scandinavian welfare democracies have not yet been successful in relieving the financial pressure experienced by single working mothers. Development of efficient financial support systems should be prioritized. Ways to reduce work-family conflict in both single and non-single mothers in Scandinavia should also be given increased attention.

Along and Across Arc Variation of the Central Andes by Single Crystal Trace Element Analaysis

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Michelfelder, G.; Sundell, T.; Wilder, A.; Salings, E. E.

2017-12-01

Along arc and across arc geochemical variations at continental volcanic arcs are influenced by a number of factors including the composition and thickness of the continental crust, mantle heterogeneity, and fluids from the subducted slab. Whole rock geochemical trends along and across the arc front of the Central Volcanic Zone (CVZ) have been suggested to be primarily influenced by the composition and thickness of the crust. In the CVZ, Pb isotopic domains relate volcanic rock compositions to the crustal basement and systematically varies with crustal age. It has been shown repeatedly that incompatible trace element trends and trace element ratios can be used to infer systematic geochemical changes. However, there is no rule linking magmatic process or chemical heterogeneity/ homogeneity as a result of large crustal magma storage reservoirs such as MASH zones to the observed variation. Here we present a combination of whole rock major- and trace element data, isotopic data and in situ single crystal data from plagioclase, pyroxene and olivine for six stratovolcanoes along the arc front and in the back arc of the CVZ. We compare geochemical trends at the whole and single crystal scale. These volcanoes include lava flows and domes from Cerro Uturuncu in the back-arc, Aucanquilcha, Ollagüe, San Pedro-San Pablo, Lascar, and Lazufre from the arc front. On an arc-wide scale, whole rock samples of silicic lavas from these six composite volcanoes display systematically higher K2O, LILE, REE and HFSE contents and 87Sr/86Sr ratios with increasing distance from the arc-front. In contrast, the lavas have systematically lower Na2O, Sr, and Ba contents; LILE/HFSE ratios; 143Nd/144Nd ratios; and more negative Eu anomalies. Silicic magmas along the arc-front reflecting melting of young, mafic composition source rocks with the continental crust becoming increasingly older and more felsic toward the east. These trends are paralleled in the trace element compositions of plagioclase

Solving Variable Coefficient Fourth-Order Parabolic Equation by ...

African Journals Online (AJOL)

Solving Variable Coefficient Fourth-Order Parabolic Equation by Modified initial guess Variational ... variable coefficient fourth order parabolic partial differential equations. The new method shows rapid convergence to the exact solution.

Spatial variability of the physical and mineralogical properties of the soil from the areas with variation in landscape shapes

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Zigomar Menezes de Souza

2009-04-01

Full Text Available The objective of this work it was to use the geostatistics methods to investigate the spatial relationships between the physical and mineralogical properties of an oxisol planted with the sugarcane in an area of slight variations in the landform. The soil was sampled at 10 m regular intervals in the crossing points of a 100 x 100 m grid. At each point, the soil was collected at 0.0-0.2 m, 0.2-0.4 m and 0.4-0.6 m depths for the analyzes of physical properties and at 0.6-0.8 m for the mineralogical analyses. Both the Kt/Kt+Gb ratio and Kt relative crystallization level were higher in the compartment I than in the compartment II. As a consequence, the soil penetration resistance and bulk density were higher in the compartment I, while the macroporosity and Ksat were lower. Therefore, it was concluded that both the identification and mapping of a landform were efficient for understanding the spatial variability of the soil properties. Moreover, variations in the landscape shape promoted the differentiated variability of the physical and mineralogical soil properties: the more variable the landscape, the more variable was the soil properties.Este trabalho teve como objetivo avaliar a influência das formas do relevo na variabilidade espacial de atributos físicos e suas relações com a mineralogia da argila de um Latossolo Vermelho eutroférrico, utilizando a técnica da geoestatística. Os solos foram amostrados nos pontos de cruzamento de uma malha, com intervalos regulares de 10 m, nas profundidades de 0,0-0,2 m, 0,2-0,4 m e 0,4-0,6 m para os atributos físicos e 0,6-0,8 m para os atributos mineralógicos. Os valores médios para a densidade do solo e resistência do solo à penetração são maiores no compartimento I onde a relação Ct/Ct+Gb é relativamente maior, indicando a presença de maior teor de caulinita. No compartimento II a condutividade hidráulica e a macroporsidade são maiores, influenciados provavelmente pelo predomínio da

Observer variation in skeletal radiology

Energy Technology Data Exchange (ETDEWEB)

Cockshott, W.P.; Park, W.M.

1983-08-01

The factors that affect observer variation in bone radiology are analysed from data in the literature and on the basis of studies carried out at McMaster University on the hands and sacroiliac joints. A plea is made for presenting results in terms of Kappa statistics so that agreement due purely to chance is eliminated. In the conclusions the main variables that affect concordance are listed so that strategies can be developed to reduce observer variation. This is important in serial studies to ensure that the observer variations are smaller than the effect one wishes to measure.

Annotate-it: a Swiss-knife approach to annotation, analysis and interpretation of single nucleotide variation in human disease.

Science.gov (United States)

Sifrim, Alejandro; Van Houdt, Jeroen Kj; Tranchevent, Leon-Charles; Nowakowska, Beata; Sakai, Ryo; Pavlopoulos, Georgios A; Devriendt, Koen; Vermeesch, Joris R; Moreau, Yves; Aerts, Jan

2012-01-01

The increasing size and complexity of exome/genome sequencing data requires new tools for clinical geneticists to discover disease-causing variants. Bottlenecks in identifying the causative variation include poor cross-sample querying, constantly changing functional annotation and not considering existing knowledge concerning the phenotype. We describe a methodology that facilitates exploration of patient sequencing data towards identification of causal variants under different genetic hypotheses. Annotate-it facilitates handling, analysis and interpretation of high-throughput single nucleotide variant data. We demonstrate our strategy using three case studies. Annotate-it is freely available and test data are accessible to all users at http://www.annotate-it.org.

Temporal variations of NDVI and correlations between NDVI and hydro-climatological variables at Lake Baiyangdian, China.

Science.gov (United States)

Wang, Fei; Wang, Xuan; Zhao, Ying; Yang, Zhifeng

2014-09-01

In this paper, correlations between vegetation dynamics (represented by the normalized difference vegetation index (NDVI)) and hydro-climatological factors were systematically studied in Lake Baiyangdian during the period from April 1998 to July 2008. Six hydro-climatological variables including lake volume, water level, air temperature, precipitation, evaporation, and sunshine duration were used, as well as extracted NDVI series data representing vegetation dynamics. Mann-Kendall tests were used to detect trends in NDVI and hydro-climatological variation, and a Bayesian information criterion method was used to detect their abrupt changes. A redundancy analysis (RDA) was used to determine the major hydro-climatological factors contributing to NDVI variation at monthly, seasonal, and yearly scales. The results were as follows: (1) the trend analysis revealed that only sunshine duration significantly increased over the study period, with an inter-annual increase of 3.6 h/year (p NDVI trends were negligible; (2) the abrupt change detection showed that a major hydro-climatological change occurred in 2004, when abrupt changes occurred in lake volume, water level, and sunlight duration; and (3) the RDA showed that evaporation and temperature were highly correlated with monthly changes in NDVI. At larger time scales, however, water level and lake volume gradually became more important than evaporation and precipitation in terms of their influence on NDVI. These results suggest that water availability is the most important factor in vegetation restoration. In this paper, we recommend a practical strategy for lake ecosystem restoration that takes into account changes in NDVI.

Ratio index variables or ANCOVA? Fisher's cats revisited.

Science.gov (United States)

Tu, Yu-Kang; Law, Graham R; Ellison, George T H; Gilthorpe, Mark S

2010-01-01

Over 60 years ago Ronald Fisher demonstrated a number of potential pitfalls with statistical analyses using ratio variables. Nonetheless, these pitfalls are largely overlooked in contemporary clinical and epidemiological research, which routinely uses ratio variables in statistical analyses. This article aims to demonstrate how very different findings can be generated as a result of less than perfect correlations among the data used to generate ratio variables. These imperfect correlations result from measurement error and random biological variation. While the former can often be reduced by improvements in measurement, random biological variation is difficult to estimate and eliminate in observational studies. Moreover, wherever the underlying biological relationships among epidemiological variables are unclear, and hence the choice of statistical model is also unclear, the different findings generated by different analytical strategies can lead to contradictory conclusions. Caution is therefore required when interpreting analyses of ratio variables whenever the underlying biological relationships among the variables involved are unspecified or unclear. (c) 2009 John Wiley & Sons, Ltd.

Multi-Band Intra-Night Optical Variability of BL Lacertae

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Haritma Gaur

2017-12-01

Full Text Available We monitored BL Lacertae frequently during 2014–2016 when it was generally in a high state. We searched for intra-day variability for 43 nights using quasi-simultaneous measurements in the B, V, R, and I bands (totaling 143 light curves; the typical sampling interval was about eight minutes. On hour-like timescales, BL Lac exhibited significant variations during 13 nights in various optical bands. Significant spectral variations are seen during most of these nights such that the optical spectrum becomes bluer when brighter. The amplitude of variability is usually greater for longer observations but is lower when BL Lac is brighter. No evidence for periodicities or characteristic variability time-scales in the light curves was found. The color variations are mildly chromatic on long timescales.

Ecosystem variability in the offshore northeastern Chukchi Sea

Science.gov (United States)

Blanchard, Arny L.; Day, Robert H.; Gall, Adrian E.; Aerts, Lisanne A. M.; Delarue, Julien; Dobbins, Elizabeth L.; Hopcroft, Russell R.; Questel, Jennifer M.; Weingartner, Thomas J.; Wisdom, Sheyna S.

2017-12-01

Understanding influences of cumulative effects from multiple stressors in marine ecosystems requires an understanding of the sources for and scales of variability. A multidisciplinary ecosystem study in the offshore northeastern Chukchi Sea during 2008-2013 investigated the variability of the study area's two adjacent sub-ecosystems: a pelagic system influenced by interannual and/or seasonal temporal variation at large, oceanographic (regional) scales, and a benthic-associated system more influenced by small-scale spatial variations. Variability in zooplankton communities reflected interannual oceanographic differences in waters advected northward from the Bering Sea, whereas variation in benthic communities was associated with seafloor and bottom-water characteristics. Variations in the planktivorous seabird community were correlated with prey distributions, whereas interaction effects in ANOVA for walruses were related to declines of sea-ice. Long-term shifts in seabird distributions were also related to changes in sea-ice distributions that led to more open water. Although characteristics of the lower trophic-level animals within sub-ecosystems result from oceanographic variations and interactions with seafloor topography, distributions of apex predators were related to sea-ice as a feeding platform (walruses) or to its absence (i.e., open water) for feeding (seabirds). The stability of prey resources appears to be a key factor in mediating predator interactions with other ocean characteristics. Seabirds reliant on highly-variable zooplankton prey show long-term changes as open water increases, whereas walruses taking benthic prey in biomass hotspots respond to sea-ice changes in the short-term. A better understanding of how variability scales up from prey to predators and how prey resource stability (including how critical prey respond to environmental changes over space and time) might be altered by climate and anthropogenic stressors is essential to

Application of magnets with azimuthal field variation in charged particle optics

International Nuclear Information System (INIS)

Dojnikov, N.I.; Lamzin, E.A.; Malitskij, N.D.

1989-01-01

Examples of concrete application of magnets with azimuthal field variation are presented. Magnetic mirror and bending-focusing device representing a single magnet with azimuthal field variation, providing achromatic beam bending, are used in the LUEh-40m therapeutic acceleration. A single magnet with azimuthal field variation is also used in magnetic mirror. Achromatic magnet for the Elektronika U-003 10 MeV accelerator is fabricated and examined. 2 refs.; 5 figs

RNA-seq: technical variability and sampling

Science.gov (United States)

2011-01-01

Background RNA-seq is revolutionizing the way we study transcriptomes. mRNA can be surveyed without prior knowledge of gene transcripts. Alternative splicing of transcript isoforms and the identification of previously unknown exons are being reported. Initial reports of differences in exon usage, and splicing between samples as well as quantitative differences among samples are beginning to surface. Biological variation has been reported to be larger than technical variation. In addition, technical variation has been reported to be in line with expectations due to random sampling. However, strategies for dealing with technical variation will differ depending on the magnitude. The size of technical variance, and the role of sampling are examined in this manuscript. Results In this study three independent Solexa/Illumina experiments containing technical replicates are analyzed. When coverage is low, large disagreements between technical replicates are apparent. Exon detection between technical replicates is highly variable when the coverage is less than 5 reads per nucleotide and estimates of gene expression are more likely to disagree when coverage is low. Although large disagreements in the estimates of expression are observed at all levels of coverage. Conclusions Technical variability is too high to ignore. Technical variability results in inconsistent detection of exons at low levels of coverage. Further, the estimate of the relative abundance of a transcript can substantially disagree, even when coverage levels are high. This may be due to the low sampling fraction and if so, it will persist as an issue needing to be addressed in experimental design even as the next wave of technology produces larger numbers of reads. We provide practical recommendations for dealing with the technical variability, without dramatic cost increases. PMID:21645359

Arterial variations of upper limb: a case report

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Vollala V

2005-01-01

Full Text Available Variations of upper limb arteries are common and there are many reports about this subject. We report multiple variations in arterial pattern of upper extremity, which were encountered in a single cadaver.

Thermal barriers constrain microbial elevational range size via climate variability.

Science.gov (United States)

Wang, Jianjun; Soininen, Janne

2017-08-01

Range size is invariably limited and understanding range size variation is an important objective in ecology. However, microbial range size across geographical gradients remains understudied, especially on mountainsides. Here, the patterns of range size of stream microbes (i.e., bacteria and diatoms) and macroorganisms (i.e., macroinvertebrates) along elevational gradients in Asia and Europe were examined. In bacteria, elevational range size showed non-significant phylogenetic signals. In all taxa, there was a positive relationship between niche breadth and species elevational range size, driven by local environmental and climatic variables. No taxa followed the elevational Rapoport's rule. Climate variability explained the most variation in microbial mean elevational range size, whereas local environmental variables were more important for macroinvertebrates. Seasonal and annual climate variation showed negative effects, while daily climate variation had positive effects on community mean elevational range size for all taxa. The negative correlation between range size and species richness suggests that understanding the drivers of range is key for revealing the processes underlying diversity. The results advance the understanding of microbial species thermal barriers by revealing the importance of seasonal and diurnal climate variation, and highlight that aquatic and terrestrial biota may differ in their response to short- and long-term climate variability. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.

Predictor variables for marathon race time in recreational female runners.

Science.gov (United States)

Schmid, Wiebke; Knechtle, Beat; Knechtle, Patrizia; Barandun, Ursula; Rüst, Christoph Alexander; Rosemann, Thomas; Lepers, Romuald

2012-06-01

We intended to determine predictor variables of anthropometry and training for marathon race time in recreational female runners in order to predict marathon race time for future novice female runners. Anthropometric characteristics such as body mass, body height, body mass index, circumferences of limbs, thicknesses of skin-folds and body fat as well as training variables such as volume and speed in running training were related to marathon race time using bi- and multi-variate analysis in 29 female runners. The marathoners completed the marathon distance within 251 (26) min, running at a speed of 10.2 (1.1) km/h. Body mass (r=0.37), body mass index (r=0.46), the circumferences of thigh (r=0.51) and calf (r=0.41), the skin-fold thicknesses of front thigh (r=0.38) and of medial calf (r=0.40), the sum of eight skin-folds (r=0.44) and body fat percentage (r=0.41) were related to marathon race time. For the variables of training, maximal distance ran per week (r=- 0.38), number of running training sessions per week (r=- 0.46) and the speed of the training sessions (r= - 0.60) were related to marathon race time. In the multi-variate analysis, the circumference of calf (P=0.02) and the speed of the training sessions (P=0.0014) were related to marathon race time. Marathon race time might be partially (r(2)=0.50) predicted by the following equation: Race time (min)=184.4 + 5.0 x (circumference calf, cm) -11.9 x (speed in running during training, km/h) for recreational female marathoners. Variables of both anthropometry and training were related to marathon race time in recreational female marathoners and cannot be reduced to one single predictor variable. For practical applications, a low circumference of calf and a high running speed in training are associated with a fast marathon race time in recreational female runners.

Evolution and Outbursts of Cataclysmic Variables

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S.-B. Qian

2015-02-01

Full Text Available Mass transfer and accretion are very important to understand the evolution and observational properties of cataclysmic variables (CVs. Due to the lack of an accretion disk, eclipsing profiles of polars are the best source to study the character of mass transfer in CVs. By analyzing long-term photometric variations in the eclipsing polar HU Aqr, the property of mass transfer and accretion are investigated. The correlation between the brightness state change and the variation of the ingress profile suggests that both the accretion hot spot and the accretion stream are produced instantaneously. The observations clearly show that it is the variation of mass transfer causing the brightness state changes that is a direct evidence of variable mass transfer in a CV. It is shown that it is the local dark-spot activity near the L1 point to cause the change of the mass transfer rather than the activity cycles of the cool secondary star. Our results suggest that the evolution of CVs is more complex than that predicted by the standard model and we should consider the effect of variable mass accretion in nova and dwarf nova outbursts.

Existence of evolutionary variational solutions via the calculus of variations

Science.gov (United States)

Bögelein, Verena; Duzaar, Frank; Marcellini, Paolo

In this paper we introduce a purely variational approach to time dependent problems, yielding the existence of global parabolic minimizers, that is ∫0T ∫Ω [uṡ∂tφ+f(x,Du)] dx dt⩽∫0T ∫Ω f(x,Du+Dφ) dx dt, whenever T>0 and φ∈C0∞(Ω×(0,T),RN). For the integrand f:Ω×R→[0,∞] we merely assume convexity with respect to the gradient variable and coercivity. These evolutionary variational solutions are obtained as limits of maps depending on space and time minimizing certain convex variational functionals. In the simplest situation, with some growth conditions on f, the method provides the existence of global weak solutions to Cauchy-Dirichlet problems of parabolic systems of the type ∂tu-divDξf(x,Du)=0 in Ω×(0,∞).

Variability of ferritin measurements in chronic kidney disease; implications for iron management.

Science.gov (United States)

Ford, Bradley A; Coyne, Daniel W; Eby, Charles S; Scott, Mitchell G

2009-01-01

Serum ferritin levels are a proxy measure of iron stores; and existing guidelines for managing anemia in hemodialysis patients suggest that serum ferritin concentrations should be maintained at >200 ng/ml. The KDOQI recommendations further state there is insufficient evidence advocating routine intravenous iron when ferritin levels exceed 500 ng/ml. Here we determined the interassay differences and short-term intraindividual variability of serum ferritin measurements in patients on chronic hemodialysis to illustrate how these variances may affect treatment decisions. Intermethod variations of up to 150 ng/ml were found comparing six commonly used ferritin assays that evaluated thirteen pools of serum from hemodialysis and nonhemodialysis patients. The intraindividual variability for ferritin in 60 stable hemodialysis patients ranged between 2-62% measured over an initial two-week period and from 3-52% when factored over a six-week period. Our results suggests that single serum ferritin values should not be used to guide clinical decisions regarding treatment of chronic hemodialysis patients with intravenous iron due to significant analytical and intraindividual variability.

Variation Tolerant On-Chip Interconnects

CERN Document Server

Nigussie, Ethiopia Enideg

2012-01-01

This book presents design techniques, analysis and implementation of high performance and power efficient, variation tolerant on-chip interconnects.  Given the design paradigm shift to multi-core, interconnect-centric designs and the increase in sources of variability and their impact in sub-100nm technologies, this book will be an invaluable reference for anyone concerned with the design of next generation, high-performance electronics systems. Provides comprehensive, circuit-level explanation of high-performance, energy-efficient, variation-tolerant on-chip interconnect; Describes design techniques to mitigate problems caused by variation; Includes techniques for design and implementation of self-timed on-chip interconnect, delay variation insensitive communication protocols, high speed signaling techniques and circuits, bit-width independent completion detection and process, voltage and temperature variation tolerance.                          

Pervasive within-Mitochondrion Single-Nucleotide Variant Heteroplasmy as Revealed by Single-Mitochondrion Sequencing

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Jacqueline Morris

2017-12-01

Full Text Available Summary: A number of mitochondrial diseases arise from single-nucleotide variant (SNV accumulation in multiple mitochondria. Here, we present a method for identification of variants present at the single-mitochondrion level in individual mouse and human neuronal cells, allowing for extremely high-resolution study of mitochondrial mutation dynamics. We identified extensive heteroplasmy between individual mitochondrion, along with three high-confidence variants in mouse and one in human that were present in multiple mitochondria across cells. The pattern of variation revealed by single-mitochondrion data shows surprisingly pervasive levels of heteroplasmy in inbred mice. Distribution of SNV loci suggests inheritance of variants across generations, resulting in Poisson jackpot lines with large SNV load. Comparison of human and mouse variants suggests that the two species might employ distinct modes of somatic segregation. Single-mitochondrion resolution revealed mitochondria mutational dynamics that we hypothesize to affect risk probabilities for mutations reaching disease thresholds. : Morris et al. use independent sequencing of multiple individual mitochondria from mouse and human brain cells to show high pervasiveness of mutations. The mutations are heteroplasmic within single mitochondria and within and between cells. These findings suggest mechanisms by which mutations accumulate over time, resulting in mitochondrial dysfunction and disease. Keywords: single mitochondrion, single cell, human neuron, mouse neuron, single-nucleotide variation

Life-threatening infectious diseases of childhood: single-gene inborn errors of immunity?

Science.gov (United States)

Alcaïs, Alexandre; Quintana-Murci, Lluis; Thaler, David S; Schurr, Erwin; Abel, Laurent; Casanova, Jean-Laurent

2010-12-01

The hypothesis that inborn errors of immunity underlie infectious diseases is gaining experimental support. However, the apparent modes of inheritance of predisposition or resistance differ considerably among diseases and among studies. A coherent genetic architecture of infectious diseases is lacking. We suggest here that life-threatening infectious diseases in childhood, occurring in the course of primary infection, result mostly from individually rare but collectively diverse single-gene variations of variable clinical penetrance, whereas the genetic component of predisposition to secondary or reactivation infections in adults is more complex. This model is consistent with (i) the high incidence of most infectious diseases in early childhood, followed by a steady decline; (ii) theoretical modeling of the impact of monogenic or polygenic predisposition on the incidence distribution of infectious diseases before reproductive age; (iii) available molecular evidence from both monogenic and complex genetics of infectious diseases in children and adults; (iv) current knowledge of immunity to primary and secondary or latent infections; (v) the state of the art in the clinical genetics of noninfectious pediatric and adult diseases; and (vi) evolutionary data for the genes underlying single-gene and complex disease risk. With the recent advent of new-generation deep resequencing, this model of single-gene variations underlying severe pediatric infectious diseases is experimentally testable. © 2010 New York Academy of Sciences.

Comparison of seasonal variability in European domestic radon measurements

Science.gov (United States)

Groves-Kirkby, C. J.; Denman, A. R.; Phillips, P. S.; Crockett, R. G. M.; Sinclair, J. M.

2010-03-01

Analysis of published data characterising seasonal variability of domestic radon concentrations in Europe and elsewhere shows significant variability between different countries and between regions where regional data is available. Comparison is facilitated by application of the Gini Coefficient methodology to reported seasonal variation data. Overall, radon-rich sedimentary strata, particularly high-porosity limestones, exhibit high seasonal variation, while radon-rich igneous lithologies demonstrate relatively constant, but somewhat higher, radon concentrations. High-variability regions include the Pennines and South Downs in England, Languedoc and Brittany in France, and especially Switzerland. Low-variability high-radon regions include the granite-rich Cornwall/Devon peninsula in England, and Auvergne and Ardennes in France, all components of the Devonian-Carboniferous Hercynian belt.

De novo Genome Assembly and Single Nucleotide Variations for Soybean Mosaic Virus Using Soybean Seed Transcriptome Data

Directory of Open Access Journals (Sweden)

Yeonhwa Jo

2017-10-01

Full Text Available Soybean is the most important legume crop in the world. Several diseases in soybean lead to serious yield losses in major soybean-producing countries. Moreover, soybean can be infected by diverse viruses. Recently, we carried out a large-scale screening to identify viruses infecting soybean using available soybean transcriptome data. Of the screened transcriptomes, a soybean transcriptome for soybean seed development analysis contains several virus-associated sequences. In this study, we identified five viruses, including soybean mosaic virus (SMV, infecting soybean by de novo transcriptome assembly followed by blast search. We assembled a nearly complete consensus genome sequence of SMV China using transcriptome data. Based on phylogenetic analysis, the consensus genome sequence of SMV China was closely related to SMV isolates from South Korea. We examined single nucleotide variations (SNVs for SMVs in the soybean seed transcriptome revealing 780 SNVs, which were evenly distributed on the SMV genome. Four SNVs, C-U, U-C, A-G, and G-A, were frequently identified. This result demonstrated the quasispecies variation of the SMV genome. Taken together, this study carried out bioinformatics analyses to identify viruses using soybean transcriptome data. In addition, we demonstrated the application of soybean transcriptome data for virus genome assembly and SNV analysis.

Environmental variability uncovers disruptive effects of species' interactions on population dynamics.

Science.gov (United States)

Gudmundson, Sara; Eklöf, Anna; Wennergren, Uno

2015-08-07

How species respond to changes in environmental variability has been shown for single species, but the question remains whether these results are transferable to species when incorporated in ecological communities. Here, we address this issue by analysing the same species exposed to a range of environmental variabilities when (i) isolated or (ii) embedded in a food web. We find that all species in food webs exposed to temporally uncorrelated environments (white noise) show the same type of dynamics as isolated species, whereas species in food webs exposed to positively autocorrelated environments (red noise) can respond completely differently compared with isolated species. This is owing to species following their equilibrium densities in a positively autocorrelated environment that in turn enables species-species interactions to come into play. Our results give new insights into species' response to environmental variation. They especially highlight the importance of considering both species' interactions and environmental autocorrelation when studying population dynamics in a fluctuating environment. © 2015 The Author(s).

Flow variability and hillslope hydrology

Energy Technology Data Exchange (ETDEWEB)

Huff, D D; O' Neill, R V; Emanuel, W R; Elwood, J W; Newbold, J D

1982-01-01

Examination of spatial variability of streamflow in headwater areas can provide important insight about factors that influence hillslope hydrology. Detailed observations of variations in stream channel input, based on a tracer experiment, indicate that topography alone cannot explain flow variability. However, determination of changes in channel input on a small spatial scale can provide valuable clues to factors, such as structural geology that control subsurface flows.

Sources of Variation in Sweat Chloride Measurements in Cystic Fibrosis

Science.gov (United States)

Blackman, Scott M.; Raraigh, Karen S.; Corvol, Harriet; Rommens, Johanna M.; Pace, Rhonda G.; Boelle, Pierre-Yves; McGready, John; Sosnay, Patrick R.; Strug, Lisa J.; Knowles, Michael R.; Cutting, Garry R.

2016-01-01

Rationale: Expanding the use of cystic fibrosis transmembrane conductance regulator (CFTR) potentiators and correctors for the treatment of cystic fibrosis (CF) requires precise and accurate biomarkers. Sweat chloride concentration provides an in vivo assessment of CFTR function, but it is unknown the degree to which CFTR mutations account for sweat chloride variation. Objectives: To estimate potential sources of variation for sweat chloride measurements, including demographic factors, testing variability, recording biases, and CFTR genotype itself. Methods: A total of 2,639 sweat chloride measurements were obtained in 1,761 twins/siblings from the CF Twin-Sibling Study, French CF Modifier Gene Study, and Canadian Consortium for Genetic Studies. Variance component estimation was performed by nested mixed modeling. Measurements and Main Results: Across the tested CF population as a whole, CFTR gene mutations were found to be the primary determinant of sweat chloride variability (56.1% of variation) with contributions from variation over time (e.g., factors related to testing on different days; 13.8%), environmental factors (e.g., climate, family diet; 13.5%), other residual factors (e.g., test variability; 9.9%), and unique individual factors (e.g., modifier genes, unique exposures; 6.8%) (likelihood ratio test, P < 0.001). Twin analysis suggested that modifier genes did not play a significant role because the heritability estimate was negligible (H2 = 0; 95% confidence interval, 0.0–0.35). For an individual with CF, variation in sweat chloride was primarily caused by variation over time (58.1%) with the remainder attributable to residual/random factors (41.9%). Conclusions: Variation in the CFTR gene is the predominant cause of sweat chloride variation; most of the non-CFTR variation is caused by testing variability and unique environmental factors. If test precision and accuracy can be improved, sweat chloride measurement could be a valuable biomarker

Variational description of multifluid hydrodynamics: Uncharged fluids

Science.gov (United States)

Prix, Reinhard

2004-02-01

We present a formalism for Newtonian multifluid hydrodynamics derived from an unconstrained variational principle. This approach provides a natural way of obtaining the general equations of motion for a wide range of hydrodynamic systems containing an arbitrary number of interacting fluids and superfluids. In addition to spatial variations we use “time shifts” in the variational principle, which allows us to describe dissipative processes with entropy creation, such as chemical reactions, friction or the effects of external non-conservative forces. The resulting framework incorporates the generalization of the entrainment effect originally discussed in the case of the mixture of two superfluids by Andreev and Bashkin. In addition to the conservation of energy and momentum, we derive the generalized conservation laws of vorticity and helicity, and the special case of Ertel’s theorem for the single perfect fluid. We explicitly discuss the application of this framework to thermally conducting fluids, superfluids, and superfluid neutron star matter. The equations governing thermally conducting fluids are found to be more general than the standard description, as the effect of entrainment usually seems to be overlooked in this context. In the case of superfluid 4He we recover the Landau-Khalatnikov equations of the two-fluid model via a translation to the “orthodox” framework of superfluidity, which is based on a rather awkward choice of variables. Our two-fluid model for superfluid neutron star matter allows for dissipation via mutual friction and also “transfusion” via β reactions between the neutron fluid and the proton-electron fluid.

Explaining variation in nascent entrepreneurship

NARCIS (Netherlands)

A.J. van Stel (André); A.R.M. Wennekers (Sander); P. Reynolds (Paul); A.R. Thurik (Roy)

2004-01-01

textabstractThis paper aims at explaining cross-country variation in nascent entrepreneurship. Regression analysis is applied using various explanatory variables derived from three different approaches. We make use of the Global Entrepreneurship Monitor database, including nascent entrepreneurship

Consequences for established design practice from geographical variation of historical rainfall data

DEFF Research Database (Denmark)

Mikkelsen, P.S.; Arnbjerg-Nielsen, K.; Harremoës, P.

1997-01-01

variation and variation due to (correlated) sampling errors. Further analyses indicate that the observed variation can be explained only partially by correlation with regional climatological variables and that a significant residual variation remains, especially for large return periods. The new perceptions...

SINGLE CHAIN VARIABLE FRAGMENTS OF ANTIBODIES AGAINST DIPHTHERIA TOXIN B-SUBUNIT ISOLATED FROM PHAGE DISPLAY HUMAN ANTIBODY LIBRARY

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Oliinyk O. S.

2014-02-01

Full Text Available Diphtheria toxin is an exoantigen of Corynebacterium diphtheriae that inhibits protein synthesis and kills sensitive cells. The aim of this study was to obtain human recombinant single-chain variable fragment (scFv antibodies against receptor-binding B subunit of diphtheria toxin. 12 specific clones were selected after three rounds of a phage display naїve (unimmunized human antibody library against recombinant B-subunit. scFv DNA inserts from these 12 clones were digested with MvaI, and 6 unique restriction patterns were found. Single-chain antibodies were expressed in Escherichia coli XL1-blue. The recombinant proteins were characterized by immunoblotting of bacterial extracts and detection with an anti-E-tag antibody. The toxin B-subunit-binding function of the single-chain antibody was shown by ELISA. The affinity constants for different clones were found to be from 106 to 108 М–1. Due to the fact, that these antibody fragments recognized epitopes in the receptor-binding Bsubunit of diphtheria toxin, further studies are interesting to evaluate their toxin neutralization properties and potential for therapeutic applications. Obtained scFv-antibodies can also be used for detection and investigation of biological properties of diphtheria toxin.

Variations in brain DNA

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Jesus eAvila

2014-11-01

Full Text Available It is assumed that DNA sequences are conserved in the diverse cell types present in a multicellular organism like the human being. Thus, in order to compare the sequences in the genome of DNA from different individuals, nucleic acid is commonly isolated from a single tissue. In this regard, blood cells are widely used for this purpose because of their availability. Thus blood DNA has been used to study genetic familiar diseases that affect other tissues and organs, such as the liver, heart, and brain. While this approach is valid for the identification of familial diseases in which mutations are present in parental germinal cells and, therefore, in all the cells of a given organism, it is not suitable to identify sporadic diseases in which mutations might occur in specific somatic cells. This review addresses somatic DNA variations in different tissues or cells (mainly in the brain of single individuals and discusses whether the dogma of DNA invariance between cell types is indeed correct. We will also discuss how single nucleotide somatic variations arise, focusing on the presence of specific DNA mutations in the brain.

Variation in the estimations of ETo and crop water use due to the sensor accuracy of the meteorological variables

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R. Moratiel

2013-06-01

Full Text Available In agricultural ecosystems the use of evapotranspiration (ET to improve irrigation water management is generally widespread. Commonly, the crop ET (ETc is estimated by multiplying the reference crop evapotranspiration (ETo by a crop coefficient (Kc. Accurate estimation of ETo is critical because it is the main factor affecting the calculation of crop water use and water management. The ETo is generally estimated from recorded meteorological variables at reference weather stations. The main objective of this paper was assessing the effect of the uncertainty due to random noise in the sensors used for measurement of meteorological variables on the estimation of ETo, crop ET and net irrigation requirements of grain corn and alfalfa in three irrigation districts of the middle Ebro River basin. Five scenarios were simulated, four of them individually considering each recorded meteorological variable (temperature, relative humidity, solar radiation and wind speed and a fifth scenario combining together the uncertainty of all sensors. The uncertainty in relative humidity for irrigation districts Riegos del Alto Aragón (RAA and Bardenas (BAR, and temperature for irrigation district Canal de Aragón y Cataluña (CAC, were the two most important factors affecting the estimation of ETo, corn ET (ETc_corn, alfalfa ET (ETc_alf, net corn irrigation water requirements (IRncorn and net alfalfa irrigation water requirements (IRnalf. Nevertheless, this effect was never greater than ±0.5% over annual scale time. The wind speed variable (Scenario 3 was the third variable more influential in the fluctuations (± of evapotranspiration, followed by solar radiation. Considering the accuracy for all sensors over annual scale time, the variation was about ±1% of ETo, ETc_corn, ETc_alf, IRncorn, and IRnalf. The fluctuations of evapotranspiration were higher at shorter time scale. ETo daily fluctuation remained lower than 5 % during the growing season of corn and

Single-Level and Multilevel Mediation Analysis

Science.gov (United States)

Tofighi, Davood; Thoemmes, Felix

2014-01-01

Mediation analysis is a statistical approach used to examine how the effect of an independent variable on an outcome is transmitted through an intervening variable (mediator). In this article, we provide a gentle introduction to single-level and multilevel mediation analyses. Using single-level data, we demonstrate an application of structural…

Mastery Learning and the Decreasing Variability Hypothesis.

Science.gov (United States)

Livingston, Jennifer A.; Gentile, J. Ronald

1996-01-01

This report results from studies that tested two variations of Bloom's decreasing variability hypothesis using performance on successive units of achievement in four graduate classrooms that used mastery learning procedures. Data do not support the decreasing variability hypothesis; rather, they show no change over time. (SM)

Heat Transfer Coefficient Variations in Nuclear Fuel Rod Bundles

International Nuclear Information System (INIS)

Conner, Michael E.; Holloway, Mary V.

2007-01-01

The single-phase heat transfer performance of a PWR nuclear fuel rod bundle is enhanced by the use of mixing vanes attached to the downstream edges of the support grid straps. This improved single-phase performance will delay the onset of nucleate boiling, thereby reducing corrosion and delaying crud-related issues. This paper presents the variation in measured single-phase heat transfer coefficients (HTC) for several grid designs. Then, this variation is compared with observations of actual in-core crud patterns. While crud deposition is a function of a number of parameters including rod heat flux, the HTC is assumed to be a primary factor in explaining why crud deposition is a local phenomenon on nuclear fuel rods. The data from this study will be used to examine this assumption by providing a comparison between HTC variations and crud deposition patterns. (authors)

Photospheric Ca and Mg line-strength variations in G29-38

International Nuclear Information System (INIS)

Hippel, Ted von; Thompson, Susan E; Reach, W T; Mullally, F; Kilic, Mukremin; Nitta, Atsuko

2009-01-01

Temporal variations in metal-line strengths in H-atmosphere white dwarfs hold the potential to test the timescales of gravitational settling theory. These short timescales, in turn, require that DAZs are currently accreting. Such temporal variations would also indicate that accretion from a circumstellar dust disk can be episodic. We are compiling increasing evidence for time-variable Ca and Mg line-strength variations in the best studied DAZ, G29-38. Our evidence to date supports the gravitational settling timescales of Koester and Wilken (2006) and episodic accretion from G29-38's debris disk. Furthermore, we have detected evidence for time-variable accretion with a timescale = 24 hours, and typical variability of ∼4% during the 100 days of our autumn 2007 monitoring campaign.

Photospheric Ca and Mg line-strength variations in G29-38

Energy Technology Data Exchange (ETDEWEB)

Hippel, Ted von [Physics Department, Siena College, Loudonville, NY (United States); Thompson, Susan E [Department of Physics and Astronomy, University of Delaware, Newark, DE (United States); Reach, W T [IPAC, California Institute of Technology, Pasadena, CA (United States); Mullally, F [Department of Astronomy, Princeton University, Princeton, NJ (United States); Kilic, Mukremin [Center for Astrophysics, Harvard University, Cambridge, MA (United States); Nitta, Atsuko, E-mail: tvonhippel@siena.ed, E-mail: sthomp@physics.udel.ed, E-mail: reach@ipac.caltech.ed, E-mail: fergal@astro.princeton.ed, E-mail: kilic@astronomy.ohio-state.ed, E-mail: anitta@gemini.ed [Gemini Observatory, Hilo, HI (United States)

2009-06-01

Temporal variations in metal-line strengths in H-atmosphere white dwarfs hold the potential to test the timescales of gravitational settling theory. These short timescales, in turn, require that DAZs are currently accreting. Such temporal variations would also indicate that accretion from a circumstellar dust disk can be episodic. We are compiling increasing evidence for time-variable Ca and Mg line-strength variations in the best studied DAZ, G29-38. Our evidence to date supports the gravitational settling timescales of Koester and Wilken (2006) and episodic accretion from G29-38's debris disk. Furthermore, we have detected evidence for time-variable accretion with a timescale = 24 hours, and typical variability of approx4% during the 100 days of our autumn 2007 monitoring campaign.

Comparison of seasonal variability in European domestic radon measurements

Directory of Open Access Journals (Sweden)

C. J. Groves-Kirkby

2010-03-01

Full Text Available Analysis of published data characterising seasonal variability of domestic radon concentrations in Europe and elsewhere shows significant variability between different countries and between regions where regional data is available. Comparison is facilitated by application of the Gini Coefficient methodology to reported seasonal variation data. Overall, radon-rich sedimentary strata, particularly high-porosity limestones, exhibit high seasonal variation, while radon-rich igneous lithologies demonstrate relatively constant, but somewhat higher, radon concentrations. High-variability regions include the Pennines and South Downs in England, Languedoc and Brittany in France, and especially Switzerland. Low-variability high-radon regions include the granite-rich Cornwall/Devon peninsula in England, and Auvergne and Ardennes in France, all components of the Devonian-Carboniferous Hercynian belt.

Relative effects of precipitation variability and warming on tallgrass prairie ecosystem function

Directory of Open Access Journals (Sweden)

P. A. Fay

2011-10-01

Full Text Available Precipitation and temperature drive many aspects of terrestrial ecosystem function. Climate change scenarios predict increasing precipitation variability and temperature, and long term experiments are required to evaluate the ecosystem consequences of interannual climate variation, increased growing season (intra-annual rainfall variability, and warming. We present results from an experiment applying increased growing season rainfall variability and year round warming in native tallgrass prairie. During ten years of study, total growing season rainfall varied 2-fold, and we found ~50–200% interannual variability in plant growth and aboveground net primary productivity (ANPP, leaf carbon assimilation (A_CO2, and soil CO₂ efflux (J_CO2 despite only ~40% variation in mean volumetric soil water content (0–15 cm, Θ₁₅. Interannual variation in soil moisture was thus amplified in most measures of ecosystem response. Differences between years in Θ₁₅ explained the greatest portion (14–52% of the variation in these processes. Experimentally increased intra-annual season rainfall variability doubled the amplitude of intra-annual soil moisture variation and reduced Θ₁₅ by 15%, causing most ecosystem processes to decrease 8–40% in some or all years with increased rainfall variability compared to ambient rainfall timing, suggesting reduced ecosystem rainfall use efficiency. Warming treatments increased soil temperature at 5 cm depth, particularly during spring, fall, and winter. Warming advanced canopy green up in spring, increased winter J_CO2, and reduced summer J_CO2 and forb ANPP, suggesting that the effects of warming differed in cooler versus warmer parts of the year. We conclude that (1 major ecosystem processes in this grassland may be substantially altered by predicted changes in

Individual diet variation in a marine fish assemblage: Optimal Foraging Theory, Niche Variation Hypothesis and functional identity

Science.gov (United States)

Cachera, M.; Ernande, B.; Villanueva, M. C.; Lefebvre, S.

2017-02-01

Individual diet variation (i.e. diet variation among individuals) impacts intra- and inter-specific interactions. Investigating its sources and relationship with species trophic niche organization is important for understanding community structure and dynamics. Individual diet variation may increase with intra-specific phenotypic (or "individual state") variation and habitat variability, according to Optimal Foraging Theory (OFT), and with species trophic niche width, according to the Niche Variation Hypothesis (NVH). OFT proposes "proximate sources" of individual diet variation such as variations in habitat or size whereas NVH relies on "ultimate sources" related to the competitive balance between intra- and inter-specific competitions. The latter implies as a corollary that species trophic niche overlap, taken as inter-specific competition measure, decreases as species niche width and individual niche variation increase. We tested the complementary predictions of OFT and NVH in a marine fish assemblage using stomach content data and associated trophic niche metrics. The NVH predictions were tested between species of the assemblage and decomposed into a between- and a within-functional group component to assess the potential influence of species' ecological function. For most species, individual diet variation and niche overlap were consistently larger than expected. Individual diet variation increased with intra-specific variability in individual state and habitat, as expected from OFT. It also increased with species niche width but in compliance with the null expectation, thus not supporting the NVH. In contrast, species niche overlap increased significantly less than null expectation with both species niche width and individual diet variation, supporting NVH corollary. The between- and within-functional group components of the NVH relationships were consistent with those between species at the assemblage level. Changing the number of prey categories used to

Explaining the variation in the shear force of lamb meat using sarcomere length, the rate of rigor onset and pH.

Science.gov (United States)

Hopkins, D L; Toohey, E S; Lamb, T A; Kerr, M J; van de Ven, R; Refshauge, G

2011-08-01

The temperature when the pH=6.0 (temp@pH6) impacts on the tenderness and eating quality of sheep meat. Due to the expense, sarcomere length is not routinely measured as a variable to explain variation in shear force, but whether measures such as temp@pH6 are as useful a parameter needs to be established. Measures of rigor onset in 261 carcases, including the temp@pH6, were evaluated in this study for their ability to explain some of the variation in shear force. The results show that for 1 day aged product combinations of the temp@pH6, the pH at 18 °C and the pH at 24 h provided a larger reduction (almost double) in total shear force variation than sarcomere length alone, with pH at 24 h being the single best measure. For 5 day aged product, pH at 18 °C was the single best measure. Inclusion of sarcomere length did represent some improvement, but the marginal increase would not be cost effective. Crown Copyright © 2011. Published by Elsevier Ltd. All rights reserved.

Instrumental variables I: instrumental variables exploit natural variation in nonexperimental data to estimate causal relationships.

Science.gov (United States)

Rassen, Jeremy A; Brookhart, M Alan; Glynn, Robert J; Mittleman, Murray A; Schneeweiss, Sebastian

2009-12-01

The gold standard of study design for treatment evaluation is widely acknowledged to be the randomized controlled trial (RCT). Trials allow for the estimation of causal effect by randomly assigning participants either to an intervention or comparison group; through the assumption of "exchangeability" between groups, comparing the outcomes will yield an estimate of causal effect. In the many cases where RCTs are impractical or unethical, instrumental variable (IV) analysis offers a nonexperimental alternative based on many of the same principles. IV analysis relies on finding a naturally varying phenomenon, related to treatment but not to outcome except through the effect of treatment itself, and then using this phenomenon as a proxy for the confounded treatment variable. This article demonstrates how IV analysis arises from an analogous but potentially impossible RCT design, and outlines the assumptions necessary for valid estimation. It gives examples of instruments used in clinical epidemiology and concludes with an outline on estimation of effects.

Stimulus variability and the phonetic relevance hypothesis: effects of variability in speaking style, fundamental frequency, and speaking rate on spoken word identification.

Science.gov (United States)

Sommers, Mitchell S; Barcroft, Joe

2006-04-01

Three experiments were conducted to examine the effects of trial-to-trial variations in speaking style, fundamental frequency, and speaking rate on identification of spoken words. In addition, the experiments investigated whether any effects of stimulus variability would be modulated by phonetic confusability (i.e., lexical difficulty). In Experiment 1, trial-to-trial variations in speaking style reduced the overall identification performance compared with conditions containing no speaking-style variability. In addition, the effects of variability were greater for phonetically confusable words than for phonetically distinct words. In Experiment 2, variations in fundamental frequency were found to have no significant effects on spoken word identification and did not interact with lexical difficulty. In Experiment 3, two different methods for varying speaking rate were found to have equivalent negative effects on spoken word recognition and similar interactions with lexical difficulty. Overall, the findings are consistent with a phonetic-relevance hypothesis, in which accommodating sources of acoustic-phonetic variability that affect phonetically relevant properties of speech signals can impair spoken word identification. In contrast, variability in parameters of the speech signal that do not affect phonetically relevant properties are not expected to affect overall identification performance. Implications of these findings for the nature and development of lexical representations are discussed.

Development of a temperature-variable magnetic resonance imaging system using a 1.0T yokeless permanent magnet.

Science.gov (United States)

Terada, Y; Tamada, D; Kose, K

2011-10-01

A temperature variable magnetic resonance imaging (MRI) system has been developed using a 1.0 T permanent magnet. A permanent magnet, gradient coils, radiofrequency coil, and shim coil were installed in a temperature variable thermostatic bath. First, the variation in the magnetic field inhomogeneity with temperature was measured. The inhomogeneity has a specific spatial symmetry, which scales linearly with temperature, and a single-channel shim coil was designed to compensate for the inhomogeneity. The inhomogeneity was drastically reduced by shimming over a wide range of temperature from -5°C to 45°C. MR images of an okra pod acquired at different temperatures demonstrated the high potential of the system for visualizing thermally sensitive properties. Copyright © 2011 Elsevier Inc. All rights reserved.

Partitioning inter annual variability in net ecosystem exchange between climatic variability and functional change

International Nuclear Information System (INIS)

Hui, D.; Luo, Y.; Katul, G.

2003-01-01

Inter annual variability in net ecosystem exchange of carbon is investigated using a homogeneity-of-slopes model to identify the function change contributing to inter annual variability, net ecosystem carbon exchange, and night-time ecosystem respiration. Results of employing this statistical approach to a data set collected at the Duke Forest AmeriFlux site from August 1997 to December 2001 are discussed. The results demonstrate that it is feasible to partition the variation in ecosystem carbon fluxes into direct effects of seasonal and inter annual climatic variability and functional change. 51 refs., 4 tabs., 5 figs

Genomic variation landscape of the human gut microbiome

DEFF Research Database (Denmark)

Schloissnig, Siegfried; Arumugam, Manimozhiyan; Sunagawa, Shinichi

2013-01-01

Whereas large-scale efforts have rapidly advanced the understanding and practical impact of human genomic variation, the practical impact of variation is largely unexplored in the human microbiome. We therefore developed a framework for metagenomic variation analysis and applied it to 252 faecal...... polymorphism rates of 0.11 was more variable between gut microbial species than across human hosts. Subjects sampled at varying time intervals exhibited individuality and temporal stability of SNP variation patterns, despite considerable composition changes of their gut microbiota. This indicates...

Estimation of Hedonic Single-Family House Price Function Considering Neighborhood Effect Variables

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Chihiro Shimizu

2014-05-01

Full Text Available In the formulation of hedonic models, in addition to locational factors and building structures which affect the house prices, the generation of the omitted variable bias is thought to occur in cases when local environmental variables and the individual characteristics of house buyers are not taken into consideration. However, since it is difficult to obtain local environmental information in a small neighborhood unit and to observe individual characteristics of house buyers, these variables have not been sufficiently considered in previous studies. We demonstrated that non-negligible levels of omitted variable bias are generated if these variables are not considered.

Development and validation of a single-tube multiple-locus variable number tandem repeat analysis for Klebsiella pneumoniae.

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Antoinette A T P Brink

Full Text Available Genotyping of Klebsiella pneumoniae is indispensable for management of nosocomial infections, monitoring of emerging strains--including extended-spectrum beta-lactamase (ESBL producers-, and general epidemiology. Such objectives require a high-resolution genotyping method with a fixed scheme that allows (1 long-term retrospective and prospective assessment, (2 objective result readout and (3 library storage for database development and exchangeable results. We have developed a multiple-locus variable number tandem repeat analysis (MLVA using a single-tube fluorescently primed multiplex PCR for 8 Variable Number Tandem Repeats (VNTRs and automated fragment size analysis. The type allocation scheme was optimized using 224 K. pneumoniae clinical isolates, which yielded 101 MLVA types. The method was compared to the gold standard multilocus sequence typing (MLST using a subset of these clinical isolates (n = 95 and found to be highly concordant, with at least as high a resolution but with considerably less hands-on time. Our results position this MLVA scheme as an appropriate, high-throughput and relatively low-cost tool for K. pneumoniae epidemiology.

Single Cell Isolation and Analysis

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Ping Hu

2016-10-01

Full Text Available Increasing evidence shows that the heterogeneity of individual cells within a genetically identical population can be critical to their peculiar function and fate. Conventional cell based assays mainly analysis the average responses from a population cells, while the difference within individual cells may often be masked. The cell size, RNA transcripts and protein expression level are quite different within individual cells and these variations are key point to answer the problems in cancer, neurobiology, stem cell biology, immunology and developmental biology. To better understand the cell-to-cell variations, the single cell analysis can provide much more detailed information which may be helpful for therapeutic decisions in an increasingly personalized medicine. In this review, we will focus on the recent development in single cell analysis, including methods used in single cell isolation, analysis and some application examples. The review provides the historical background to single cell analysis, discusses limitations, and current and future possibilities in this exciting field of research.

Simulating sub-Milankovitch climate variations associated with vegetation dynamics

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E. Tuenter

2007-01-01

Full Text Available Climate variability at sub-Milankovitch periods (between 2 and 15 kyr is studied in a set of transient simulations with a coupled atmosphere/ocean/vegetation model of intermediate complexity (CLIMBER-2. Focus is on the region influenced by the African and Asian summer monsoon. Pronounced variations at periods of about 10 kyr (Asia and Africa and about 5 kyr (Asia are found in the monsoonal runoff in response to the precessional forcing. In the model this is due to the following mechanism. For low summer insolation (precession maximum precipitation is low and desert expands at the expense of grass, while for high insolation (precession minimum precipitation is high and the tree fraction increases also reducing the grass fraction. This induces sub-Milankovitch variations in the grass fraction and associated variations in the water holding capacity of the soil. The runoff does not exhibit sub-Milankovitch variability when vegetation is kept fixed. High-latitude vegetation also exhibits sub-Milankovitch variability under both obliquity and precessional forcing. We thus hypothesize that sub-Milankovitch variability can occur due to the dynamic response of the vegetation. However, this mechanism should be further tested with more sophisticated climate/vegetation models.

Crab Nebula Variations in Hard X-rays

Science.gov (United States)

Wilson-Hodge, Colleen A.

2012-01-01

The Crab Nebula was surprisingly variable from 2001-2010, with less variability before 2001 and since mid-2010. We presented evidence for spectral softening from RXTE, Swift/BAT, and Fermi GBM during the mid-2008-2010 flux decline. We see no clear connections between the hard X-ray variations and the GeV flares

Variation of intrinsic magnetic parameters of single domain Co-N interstitial nitrides synthesized via hexa-ammine cobalt nitrate route

Energy Technology Data Exchange (ETDEWEB)

Ningthoujam, R.S. [Department of Chemistry, Indian Institute of Technology, Kanpur 208016 (India); Chemistry Division, Bhabha Atomic Research Centre, Mumbai 400085 (India); Panda, R.N., E-mail: rnp@bits-goa.ac.in [Chemistry Group, Birla Institute of Technology and Science-Pilani, Goa Campus, Zuari Nagar, Goa 403726 (India); Gajbhiye, N.S. [Department of Chemistry, Indian Institute of Technology, Kanpur 208016 (India)

2012-05-15

Highlights: Black-Right-Pointing-Pointer Variation of intrinsic magnetic parameters of Co-N. Black-Right-Pointing-Pointer Synthesis by hexa-ammine cobalt complex route. Black-Right-Pointing-Pointer Tuning of coercivity by variation of size. - Abstract: We report the variation of Curie temperature (T{sub c}) and coercivity (H{sub c}) of the single domain Co-N interstitial materials synthesized via nitridation of the hexa-ammine Cobalt(III) nitrate complex at 673 K. Co-N materials crystallize in the fcc cubic structure with unit cell parameter, a = 3.552 Angstrom-Sign . The X-ray diffraction (XRD) peaks are broader indicating the materials to be nano-structured with crystallite sizes of 5-14 nm. The scanning electron microscopy (SEM) and transmission electron microscopy (TEM) studies confirm the nanocrystalline nature of the materials. TEM images show chain-like clusters indicating dipolar interactions between the particles. Magnetic studies focus on the existence of giant magnetic Co atoms in the Co-N lattice that are not influenced by the thermal relaxation. The values of the H{sub c} could be tuned with the dimension of the particles. The values of T{sub c} of the nitride materials are masked by the onset of the ferromagnetic to superparamagnetic transition at higher temperatures. Thermomagnetic studies show an increasing trend in the Curie temperature, T{sub c}, with decrease in particle dimension. This result has been explained qualitatively on the basis of ferromagnetic to superparamagnetic transition and finite size scaling effects.

Solar UV Variations During the Decline of Cycle 23

Science.gov (United States)

DeLand, Matthew, T.; Cebula, Richard P.

2011-01-01

Characterization of temporal and spectral variations in solar ultraviolet irradiance over a solar cycle is essential for understanding the forcing of Earth's atmosphere and climate. Satellite measurements of solar UV variability for solar cycles 21, 22, and 23 show consistent solar cycle irradiance changes at key wavelengths (e.g. 205 nm, 250 nm) within instrumental uncertainties. All historical data sets also show the same relative spectral dependence for both short-term (rotational) and long-term (solar cycle) variations. Empirical solar irradiance models also produce long-term solar UV variations that agree well with observational data. Recent UV irradiance data from the Solar Radiation and Climate Experiment (SORCE) Spectral Irradiance Monitor (SIM) and Solar Stellar Irradiance Comparison Experiment (SOLSTICE) instruments covering the declining phase of Cycle 23 present a different picture oflong-term solar variations from previous results. Time series of SIM and SOLSTICE spectral irradiance data between 2003 and 2007 show solar variations that greatly exceed both previous measurements and predicted irradiance changes over this period, and the spectral dependence of the SIM and SOLSTICE variations during these years do not show features expected from solar physics theory. The use of SORCE irradiance variations in atmospheric models yields substantially different middle atmosphere ozone responses in both magnitude and vertical structure. However, short-term solar variability derived from SIM and SOLSTICE UV irradiance data is consistent with concurrent solar UV measurements from other instruments, as well as previous results, suggesting no change in solar physics. Our analysis of short-term solar variability is much less sensitive to residual instrument response changes than the observations of long-term variations. The SORCE long-term UV results can be explained by under-correction of instrument response changes during the first few years of measurements

Softening the ultra-stiff: Controlled variation of Young’s modulus in single-crystal diamond by ion implantation

International Nuclear Information System (INIS)

Battiato, A.; Lorusso, M.; Bernardi, E.; Picollo, F.; Bosia, F.; Ugues, D.; Zelferino, A.; Damin, A.; Baima, J.

2016-01-01

A combined experimental and numerical study on the variation of the elastic properties of defective single-crystal diamond is presented for the first time, by comparing nano-indentation measurements on MeV-ion-implanted samples with multi-scale modeling consisting of both ab initio atomistic calculations and meso-scale Finite Element Method (FEM) simulations. It is found that by locally introducing defects in the 2 × 10 18 –5 × 10 21  cm −3 density range, a significant reduction of Young’s modulus, as well as of density, can be induced in the diamond crystal structure without incurring in the graphitization of the material. Ab initio atomistic simulations confirm the experimental findings with a good degree of confidence. FEM simulations are further employed to verify the consistency of measured deformations with a stiffness reduction, and to derive strain and stress levels in the implanted region. Combining these experimental and numerical results, we also provide insight into the mechanism responsible for the depth dependence of the graphitization threshold in diamond. This work prospects the possibility of achieving accurate tunability of the mechanical properties of single-crystal diamond through defect engineering, with significant technological applications, e.g. the fabrication and control of the resonant frequency of diamond-based micromechanical resonators.

Hisonotus acuen, a new and phenotypically variable cascudinho (Siluriformes, Loricariidae, Hypoptopomatinae from the upper rio Xingu basin, Brazil

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Gabriel da Costa e Silva

2014-09-01

Full Text Available A new species of Hisonotus is described from the headwaters of the rio Xingu. The new species is distinguished from its congeners by having a functional V-shaped spinelet, odontodes not forming longitudinal aligned rows on the head and trunk, lower counts of the lateral and median series of abdominal figs, presence of a single rostral fig at the tip of the snout, absence of the unpaired figlets at typical adipose fin position, yellowish-tipped teeth, absence of conspicuous dark saddles and stripe on the body and higher number of teeth on the premaxillary and dentary. The new species, Hisonotus acuen, is restricted to headwaters of the rio Xingu basin, and is the first species of the genus Hisonotus described from the rio Xingu basin. Hisonotus acuen is highly variable in aspects of external body proportions, including body depth, snout length, and abdomen length. This variation is partly distributed within and among populations, and is not strongly correlated with body size. PCA of 83 adult specimens from six allopatric populations indicates the presence of continuous variation. Therefore, the available morphological data suggest that the individuals inhabiting the six localities of rio Xingu represent different populations of a single species. Low intraspecific variation in mitochondrial Cytochrome oxidase subunit I (COI provides corroborative evidence.

An investigation of the photometric variability of confirmed and candidate Galactic Be stars using ASAS-3 data

Science.gov (United States)

Bernhard, Klaus; Otero, Sebastián; Hümmerich, Stefan; Kaltcheva, Nadejda; Paunzen, Ernst; Bohlsen, Terry

2018-05-01

We present an investigation of a large sample of confirmed (N=233) and candidate (N=54) Galactic classical Be stars (mean V magnitude range of 6.4 to 12.6 mag), with the main aim of characterizing their photometric variability. Our sample stars were preselected among early-type variables using light curve morphology criteria. Spectroscopic information was gleaned from the literature, and archival and newly-acquired spectra. Photometric variability was analyzed using archival ASAS-3 time series data. To enable a comparison of results, we have largely adopted the methodology of Labadie-Bartz et al. (2017), who carried out a similar investigation based on KELT data. Complex photometric variations were established in most stars: outbursts on different time-scales (in 73±5 % of stars), long-term variations (36±6 %), periodic variations on intermediate time-scales (1±1 %) and short-term periodic variations (6±3 %). 24±6 % of the outbursting stars exhibit (semi)periodic outbursts. We close the apparent void of rare outbursters reported by Labadie-Bartz et al. (2017), and show that Be stars with infrequent outbursts are not rare. While we do not find a significant difference in the percentage of stars showing outbursts among early-type, mid-type and late-type Be stars, we show that early-type Be stars exhibit much more frequent outbursts. We have measured rising and falling times for well-covered and well-defined outbursts. Nearly all outburst events are characterized by falling times that exceed the rising times. No differences were found between early-, mid- and late-type stars; a single non-linear function adequately describes the ratio of falling time to rising time across all spectral subtypes, with the ratio being larger for short events.

Reliability and short-term intra-individual variability of telomere length measurement using monochrome multiplexing quantitative PCR.

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Sangmi Kim

Full Text Available Studies examining the association between telomere length and cancer risk have often relied on measurement of telomere length from a single blood draw using a real-time PCR technique. We examined the reliability of telomere length measurement using sequential samples collected over a 9-month period.Relative telomere length in peripheral blood was estimated using a single tube monochrome multiplex quantitative PCR assay in blood DNA samples from 27 non-pregnant adult women (aged 35 to 74 years collected in 7 visits over a 9-month period. A linear mixed model was used to estimate the components of variance for telomere length measurements attributed to variation among women and variation between time points within women. Mean telomere length measurement at any single visit was not significantly different from the average of 7 visits. Plates had a significant systematic influence on telomere length measurements, although measurements between different plates were highly correlated. After controlling for plate effects, 64% of the remaining variance was estimated to be accounted for by variance due to subject. Variance explained by time of visit within a subject was minor, contributing 5% of the remaining variance.Our data demonstrate good short-term reliability of telomere length measurement using blood from a single draw. However, the existence of technical variability, particularly plate effects, reinforces the need for technical replicates and balancing of case and control samples across plates.

Threshold voltage variation depending on single grain boundary and stored charges in an adjacent cell for vertical silicon–oxide–nitride–oxide–silicon NAND flash memory

Science.gov (United States)

Oh, Hyeongwan; Kim, Jiwon; Baek, Rock-Hyun; Lee, Jeong-Soo

2018-04-01

The effects of single grain boundary (SGB) position and stored electron charges in an adjacent cell in silicon–oxide–nitride–oxide–silicon (SONOS) structures on the variations of threshold voltage (V th) were investigated using technology computer-aided design (TCAD) simulation. As the bit line voltage increases, the SGB position causing the maximum V th variation was shifted from the center to the source side in the channel, owing to the drain-induced grain barrier lowering effect. When the SGB is located in the spacer region, the potential interaction from both the SGB and the stored electron charges in the adjacent cell becomes significant and thus resulting in larger V th variation. In contrast, when the SGB is located at the center of the channel, the peak position of potential barrier is shifted to the center, so that the influence of the adjacent cell is diminished. As the gate length is scaled down to 20 nm, the influence of stored charges in adjacent cells becomes significant, resulting in larger V th variations.

Introduction to the calculus of variations

CERN Document Server

Sagan, Hans

1992-01-01

Excellent text provides basis for thorough understanding of the problems, methods and techniques of the calculus of variations and prepares readers for the study of modern optimal control theory. Treatment limited to extensive coverage of single integral problems in one and more unknown functions. Carefully chosen variational problems and over 400 exercises. ""Should find wide acceptance as a text and reference.""-American Mathematical Monthly. 1969 edition. Bibliography.

ANTI-CORRELATED OPTICAL FLUX AND POLARIZATION VARIABILITY IN BL LAC

Energy Technology Data Exchange (ETDEWEB)

Gaur, Haritma [Inter-University Centre for Astronomy and Astrophysics (IUCAA), Ganeshkhind, Pune 411 007 (India); Gupta, Alok C. [Aryabhatta Research Institute of Observational Sciences (ARIES), Manora Peak, Nainital 263 129 (India); Wiita, Paul J. [Department of Physics, The College of New Jersey, P.O. Box 7718, Ewing, NJ 08628-0718 (United States); Uemura, Makoto; Itoh, Ryosuke; Sasada, Mahito, E-mail: haritma@iucaa.ernet.in [Hiroshima Astrophysical Science Center, Hiroshima University, Kagamiyama 1-3-1, Higashi-Hiroshima 739-8526 (Japan)

2014-01-20

We present the results of photometric (V band) and polarimetric observations of the blazar BL Lac during 2008-2010 using TRISPEC attached to the KANATA 1.5 m telescope in Japan. The data reveal a great deal of variability ranging from days to months with detection of strong variations in fractional polarization. The V band flux strongly anticorrelates with the degree of polarization during the first of two observing seasons but not during the second. The direction of the electric vector, however, remained roughly constant during all of our observations. These results are consistent with a model with at least two emission regions being present, with the more variable component having a polarization direction nearly perpendicular to that of the relatively quiescent region so that a rising flux can produce a decline in degree of polarization. We also computed models involving helical jet structures and single transverse shocks in jets and show that they might also be able to agree with the anticorrelations between flux and fractional polarization.

Base-Stock Level yang Meminimasi Biaya pada Permasalahan Single Order

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Tanti Octavia

2011-01-01

Full Text Available The purpose of this research is to conduct an analysis on demand characteristic and inventory cost which might potentially influence the determination of base-stock level. Appropriate base-stock level will determine the maximum profit and also reduce the stockout cost for fashion products which has high demand uncertainty and single order problem. Case study is applied on a garment company with eight fashion product types that can be classified into short and long lifetime. The effect of coefficient variation, salvage price and stockout cost is analyzed towards profits and base stock level. It can be concluded that demand variability does not affect base stock level, while stockout cost and salvage price does.

Accommodating variation: dialects, idiolects, and speech processing.

Science.gov (United States)

Kraljic, Tanya; Brennan, Susan E; Samuel, Arthur G

2008-04-01

Listeners are faced with enormous variation in pronunciation, yet they rarely have difficulty understanding speech. Although much research has been devoted to figuring out how listeners deal with variability, virtually none (outside of sociolinguistics) has focused on the source of the variation itself. The current experiments explore whether different kinds of variation lead to different cognitive and behavioral adjustments. Specifically, we compare adjustments to the same acoustic consequence when it is due to context-independent variation (resulting from articulatory properties unique to a speaker) versus context-conditioned variation (resulting from common articulatory properties of speakers who share a dialect). The contrasting results for these two cases show that the source of a particular acoustic-phonetic variation affects how that variation is handled by the perceptual system. We also show that changes in perceptual representations do not necessarily lead to changes in production.

Genetic variation of piperidine alkaloids in Pinus ponderosa: a common garden study.

Science.gov (United States)

Gerson, Elizabeth A; Kelsey, Rick G; St Clair, J Bradley

2009-02-01

Previous measurements of conifer alkaloids have revealed significant variation attributable to many sources, environmental and genetic. The present study takes a complementary and intensive, common garden approach to examine genetic variation in Pinus ponderosa var. ponderosa alkaloid production. Additionally, this study investigates the potential trade-off between seedling growth and alkaloid production, and associations between topographic/climatic variables and alkaloid production. Piperidine alkaloids were quantified in foliage of 501 nursery seedlings grown from seed sources in west-central Washington, Oregon and California, roughly covering the western half of the native range of ponderosa pine. A nested mixed model was used to test differences among broad-scale regions and among families within regions. Alkaloid concentrations were regressed on seedling growth measurements to test metabolite allocation theory. Likewise, climate characteristics at the seed sources were also considered as explanatory variables. Quantitative variation from seedling to seedling was high, and regional variation exceeded variation among families. Regions along the western margin of the species range exhibited the highest alkaloid concentrations, while those further east had relatively low alkaloid levels. Qualitative variation in alkaloid profiles was low. All measures of seedling growth related negatively to alkaloid concentrations on a natural log scale; however, coefficients of determination were low. At best, annual height increment explained 19.4 % of the variation in ln(total alkaloids). Among the climate variables, temperature range showed a negative, linear association that explained 41.8 % of the variation. Given the wide geographic scope of the seed sources and the uniformity of resources in the seedlings' environment, observed differences in alkaloid concentrations are evidence for genetic regulation of alkaloid secondary metabolism in ponderosa pine. The theoretical

Retrofitting of heat exchanger networks involving streams with variable heat capacity: Application of single and multi-objective optimization

International Nuclear Information System (INIS)

Sreepathi, Bhargava Krishna; Rangaiah, G.P.

2015-01-01

Heat exchanger network (HEN) retrofitting improves the energy efficiency of the current process by reducing external utilities. In this work, HEN retrofitting involving streams having variable heat capacity is studied. For this, enthalpy values of a stream are fitted to a continuous cubic polynomial instead of a stepwise approach employed in the previous studies [1,2]. The former methodology is closer to reality as enthalpy or heat capacity changes gradually instead of step changes. Using the polynomial fitting formulation, single objective optimization (SOO) and multi-objective optimization (MOO) of a HEN retrofit problem are investigated. The results obtained show an improvement in the utility savings, and MOO provides many Pareto-optimal solutions to choose from. Also, Pareto-optimal solutions involving area addition in existing heat exchangers only (but no new exchangers and no structural modifications) are found and provided for comparison with those involving new exchangers and structural modifications as well. - Highlights: • HEN retrofitting involving streams with variable heat capacities is studied. • A continuous approach to handle variable heat capacity is proposed and tested. • Better and practical solutions are obtained for HEN retrofitting in process plants. • Pareto-optimal solutions provide many alternate choices for HEN retrofitting

Effect of atrioventricular conduction on heart rate variability

KAUST Repository

Ahmad, Talha Jamal

2011-08-01

This paper discusses the effect of atrioventricular conduction time (AVCT) on the short-term Heart Rate Variability (HRV) by computing HRV parameters using intervals between the onsets of successive P waves (PP time series) for three groups: normal, arrhythmia and sudden cardiac death (SCD) patients. A very precise wavelet transform based ECG delineator was developed to detect PP, PR and RR time series. Mean PR variation in arrhythmia and SCD group was found to be significantly high as compared to the normal group. It was observed that when PR variations in arrhythmia and SCD cases crossed a certain threshold, RR variability no longer provided a very accurate estimate of HRV. In such cases, PP variability was able to provide a better assessment of HRV. © 2011 IEEE.

Rare muscular variations identified in a single cadaveric upper limb: a four-headed biceps brachii and muscular elevator of the latissimus dorsi tendon.

Science.gov (United States)

Moore, Colin W; Rice, Charles L

2018-03-01

Supernumerary or accessory heads of the biceps brachii are persistent muscular structures which can vary in number and location in the arm. Variations in other arm muscles, such as the coracobrachialis, can accompany supernumerary biceps brachii musculature in the upper limb. In this case report, we describe two rare muscular variants in a single adult male: a four-headed biceps brachii and the muscular elevator of the latissimus dorsi tendon. Additionally, accessory muscles of the brachialis and flexor digiti minimi brevis were identified in the upper limb. To our knowledge, the muscular variants identified here are considered rare, and their co-occurrence in a single upper limb has not been described previously. Also, a four-headed biceps brachii consisting of both the infero-medial and infero-lateral humeral heads has not been described previously to our knowledge. We postulate that the simultaneous appearance of several muscular variations may indicate a signaling disruption in embryogenesis during muscle patterning of the ventral limb bud. Knowledge of variant musculature in the arm is important for surgeons and clinicians as these muscles and their aberrant innervation patterns can complicate surgical procedures and may compress arteries and nerves producing upper limb pain and paresthesia. The clinical, functional and embryological implications of the upper limb variants are discussed.

Current trend of annotating single nucleotide variation in humans--A case study on SNVrap.

Science.gov (United States)

Li, Mulin Jun; Wang, Junwen

2015-06-01

As high throughput methods, such as whole genome genotyping arrays, whole exome sequencing (WES) and whole genome sequencing (WGS), have detected huge amounts of genetic variants associated with human diseases, function annotation of these variants is an indispensable step in understanding disease etiology. Large-scale functional genomics projects, such as The ENCODE Project and Roadmap Epigenomics Project, provide genome-wide profiling of functional elements across different human cell types and tissues. With the urgent demands for identification of disease-causal variants, comprehensive and easy-to-use annotation tool is highly in demand. Here we review and discuss current progress and trend of the variant annotation field. Furthermore, we introduce a comprehensive web portal for annotating human genetic variants. We use gene-based features and the latest functional genomics datasets to annotate single nucleotide variation (SNVs) in human, at whole genome scale. We further apply several function prediction algorithms to annotate SNVs that might affect different biological processes, including transcriptional gene regulation, alternative splicing, post-transcriptional regulation, translation and post-translational modifications. The SNVrap web portal is freely available at http://jjwanglab.org/snvrap. Copyright © 2014 Elsevier Inc. All rights reserved.

Sensitivity analysis of recovery efficiency in high-temperature aquifer thermal energy storage with single well

DEFF Research Database (Denmark)

Jeon, Jun-Seo; Lee, Seung-Rae; Pasquinelli, Lisa

2015-01-01

., it is getting more attention as these issues are gradually alleviated. In this study, a sensitivity analysis of recovery efficiency in two cases of HT-ATES system with a single well is conducted to select key parameters. For a fractional factorial design used to choose input parameters with uniformity...... with Smoothly Clopped Absolute Deviation Penalty, is utilized. Finally, the sensitivity analysis is performed based on the variation decomposition. According to the result of sensitivity analysis, the most important input variables are selected and confirmed to consider the interaction effects for each case...

Persistence in the WFC3 IR Detector: Intrinsic Variability

Science.gov (United States)

Long, Knox S.; Baggett, Sylvia M.

2018-03-01

When the WFC3 IR detector is exposed to a bright source or sources, the sources can appear as afterimages in subsequent exposures, a phenomenon known as persistence. This can affect the science obtained with the IR channel. We have been involved in an effort to predict the brightness of the afterimages so that users can (at a minimum) flag the affected pixels and remove them from their analysis or (even better) subtract the afterimages from their science images to salvage the data. The ability of any model to remove afterimages depends on the degree to which persistence is the same for identical sets of exposures. We investigate possible time variability of persistence in the WFC3 detector using sets of (almost) identical visits comprised of single exposures of Omega Cen followed by a series of darks in which persistence is measured. We analyze 8 data sets, each consisting of two or three identical visits, with stimulus exposures between 49 and 1199 s, and find clear evidence of variability in several of the datasets in darks taken within 1000 s of the stimulus exposure. In most of the datasets, the difference in persistence for saturated pixels in the stimulus exposure is a power law decay; the visit with higher persistence has a higher power law amplitude. There was nothing unusual about the observing conditions preceding and during each of these visits that can explain the discrepancy in persistence levels. Variation in persistence implies that: (1) Unless and until the source of the variability is understood, any persistence model for the WFC3 array will be limited in its ability to predict persistence in a single observation, and, (2) as a consequence, users should always carefully inspect the results of any attempt to subtract persistence from WFC3 IR data based on a model prediction.

Eggs and hatchlings variations in desert locusts: phase related characteristics and starvation tolerance

Directory of Open Access Journals (Sweden)

Koutaro Ould Maeno

2013-12-01

Full Text Available Locusts are grasshopper species that express phase polyphenism: modifying their behavior, morphology, coloration, life history and physiology in response to crowding. Desert locusts, Schistocerca gregaria, epigenetically modify progeny quality and quantity in response to crowding. Gregarious (crowded females produce larger but fewer progeny than do solitarious (isolated ones. The variability of progeny quality within single egg pod and the reasons why gregarious progeny have a better survival than solitarious ones remains unclear. This study investigated 1 the effects of rearing density on the variation in egg size within single egg pods 2 the starvation tolerance of hatchlings from mothers with different phases and 3 the physiological differences in hatchling energy reserve. Isolated females produced smaller but more eggs than did crowded ones. The variation in egg size within egg pods was greater in the latter than in the former. A negative relationship between egg size and number of eggs per egg pod was observed for both groups. Under starvation conditions, gregarious hatchlings survived significantly longer than solitarious ones. Among the solitarious hatchlings, the survival time was longer as hatchling body size increased. However, small individuals survived as long as large ones among the gregarious hatchlings. The percentage of water content per fresh body weight was almost equal between the two phases, before and after starvation. In contrast, the percentage of lipid content per dry body weight was significantly higher in gregarious hatchlings than in solitarious ones before starvation, but became almost equal after starvation. These results demonstrated that female locusts not only trade-off to modify their progeny size and number, but also vary progenies’ energy reserves. We hypothesized that gregarious females enhance their fitness by producing progeny differently adapted to high environmental variability and particularly to

The match-to-match variation of match-running in elite female soccer.

Science.gov (United States)

Trewin, Joshua; Meylan, César; Varley, Matthew C; Cronin, John

2018-02-01

The purpose of this study was to examine the match-to-match variation of match-running in elite female soccer players utilising GPS, using full-match and rolling period analyses. Longitudinal study. Elite female soccer players (n=45) from the same national team were observed during 55 international fixtures across 5 years (2012-2016). Data was analysed using a custom built MS Excel spreadsheet as full-matches and using a rolling 5-min analysis period, for all players who played 90-min matches (files=172). Variation was examined using co-efficient of variation and 90% confidence limits, calculated following log transformation. Total distance per minute exhibited the smallest variation when both the full-match and peak 5-min running periods were examined (CV=6.8-7.2%). Sprint-efforts were the most variable during a full-match (CV=53%), whilst high-speed running per minute exhibited the greatest variation in the post-peak 5-min period (CV=143%). Peak running periods were observed as slightly more variable than full-match analyses, with the post-peak period very-highly variable. Variability of accelerations (CV=17%) and Player Load (CV=14%) was lower than that of high-speed actions. Positional differences were also present, with centre backs exhibiting the greatest variation in high-speed movements (CV=41-65%). Practitioners and researchers should account for within player variability when examining match performances. Identification of peak running periods should be used to assist worst case scenarios. Whilst micro-sensor technology should be further examined as to its viable use within match-analyses. Copyright © 2017 Sports Medicine Australia. Published by Elsevier Ltd. All rights reserved.

cgCorrect: a method to correct for confounding cell-cell variation due to cell growth in single-cell transcriptomics

Science.gov (United States)

Blasi, Thomas; Buettner, Florian; Strasser, Michael K.; Marr, Carsten; Theis, Fabian J.

2017-06-01

Accessing gene expression at a single-cell level has unraveled often large heterogeneity among seemingly homogeneous cells, which remains obscured when using traditional population-based approaches. The computational analysis of single-cell transcriptomics data, however, still imposes unresolved challenges with respect to normalization, visualization and modeling the data. One such issue is differences in cell size, which introduce additional variability into the data and for which appropriate normalization techniques are needed. Otherwise, these differences in cell size may obscure genuine heterogeneities among cell populations and lead to overdispersed steady-state distributions of mRNA transcript numbers. We present cgCorrect, a statistical framework to correct for differences in cell size that are due to cell growth in single-cell transcriptomics data. We derive the probability for the cell-growth-corrected mRNA transcript number given the measured, cell size-dependent mRNA transcript number, based on the assumption that the average number of transcripts in a cell increases proportionally to the cell’s volume during the cell cycle. cgCorrect can be used for both data normalization and to analyze the steady-state distributions used to infer the gene expression mechanism. We demonstrate its applicability on both simulated data and single-cell quantitative real-time polymerase chain reaction (PCR) data from mouse blood stem and progenitor cells (and to quantitative single-cell RNA-sequencing data obtained from mouse embryonic stem cells). We show that correcting for differences in cell size affects the interpretation of the data obtained by typically performed computational analysis.

Pitch link loads reduction of variable speed rotors by variable tuning frequency fluidlastic isolators

Directory of Open Access Journals (Sweden)

Han Dong

2015-10-01

Full Text Available To reduce the pitch link loads of variable speed rotors, variable tuning frequency fluidlastic isolators are proposed. This isolator utilizes the variation of centrifugal force due to the change of rotor speed to change the tuning port area ratio, which can change the tuning frequency of the isolator. A rotor model including the model of fluidlastic isolator is coupled with a fuselage model to predict the steady responses of the rotor system in forward flight. The aeroelastic analyses indicate that distinct performance improvement in pitch link load control can be achieved by the utilization of variable frequency isolators compared with the constant tuning frequency isolators. The 4/rev (per revolution pitch link load is observed to be reduced by 87.6% compared with the increase of 56.3% by the constant frequency isolator, when the rotor speed is reduced by 16.7%. The isolation ability at different rotor speeds in different flight states is investigated. To achieve overall load reduction within the whole range of rotor speed, the strategy of the variation of tuning frequency is adjusted. The results indicate that the 4/rev pitch link load within the whole rotor speed range is decreased.

Extensive Variation in Chromatin States Across Humans

KAUST Repository

Kasowski, M.

2013-10-17

The majority of disease-associated variants lie outside protein-coding regions, suggesting a link between variation in regulatory regions and disease predisposition. We studied differences in chromatin states using five histone modifications, cohesin, and CTCF in lymphoblastoid lines from 19 individuals of diverse ancestry. We found extensive signal variation in regulatory regions, which often switch between active and repressed states across individuals. Enhancer activity is particularly diverse among individuals, whereas gene expression remains relatively stable. Chromatin variability shows genetic inheritance in trios, correlates with genetic variation and population divergence, and is associated with disruptions of transcription factor binding motifs. Overall, our results provide insights into chromatin variation among humans.

Extensive Variation in Chromatin States Across Humans

KAUST Repository

Kasowski, M.; Kyriazopoulou-Panagiotopoulou, S.; Grubert, F.; Zaugg, J. B.; Kundaje, A.; Liu, Y.; Boyle, A. P.; Zhang, Q. C.; Zakharia, F.; Spacek, D. V.; Li, J.; Xie, D.; Olarerin-George, A.; Steinmetz, L. M.; Hogenesch, J. B.; Kellis, M.; Batzoglou, S.; Snyder, M.

2013-01-01

The majority of disease-associated variants lie outside protein-coding regions, suggesting a link between variation in regulatory regions and disease predisposition. We studied differences in chromatin states using five histone modifications, cohesin, and CTCF in lymphoblastoid lines from 19 individuals of diverse ancestry. We found extensive signal variation in regulatory regions, which often switch between active and repressed states across individuals. Enhancer activity is particularly diverse among individuals, whereas gene expression remains relatively stable. Chromatin variability shows genetic inheritance in trios, correlates with genetic variation and population divergence, and is associated with disruptions of transcription factor binding motifs. Overall, our results provide insights into chromatin variation among humans.

Factors influencing variation in dentist service rates.

Science.gov (United States)

Grembowski, D; Milgrom, P; Fiset, L

1990-01-01

In the previous article, we calculated dentist service rates for 200 general dentists based on a homogeneous, well-educated, upper-middle-class population of patients. Wide variations in the rates were detected. In this analysis, factors influencing variation in the rates were identified. Variation in rates for categories of dental services was explained by practice characteristics, patient exposure to fluoridated water supplies, and non-price competition in the dental market. Rates were greatest in large, busy practices in markets with high fees. Older practices consistently had lower rates across services. As a whole, these variables explained between 5 and 30 percent of the variation in the rates.

From genomic variation to personalized medicine

DEFF Research Database (Denmark)

Wesolowska, Agata; Schmiegelow, Kjeld

Genomic variation is the basis of interindividual differences in observable traits and disease susceptibility. Genetic studies are the driving force of personalized medicine, as many of the differences in treatment efficacy can be attributed to our genomic background. The rapid development...... a considerable amount of the phenotype variability, hence the major difficulty of interpretation lies in the complexity of molecular interactions. This PhD thesis describes the state-of-art of the functional human variation research (Chapter 1) and introduces childhood acute lymphoblastic leukaemia (ALL...... the thesis and includes some final remarks on the perspectives of genomic variation research and personalized medicine. In summary, this thesis demonstrates the feasibility of integrative analyses of genomic variations and introduces large-scale hypothesis-driven SNP exploration studies as an emerging...

Landscape variation in tree species richness in northern Iran forests.

Science.gov (United States)

Bourque, Charles P-A; Bayat, Mahmoud

2015-01-01

Mapping landscape variation in tree species richness (SR) is essential to the long term management and conservation of forest ecosystems. The current study examines the prospect of mapping field assessments of SR in a high-elevation, deciduous forest in northern Iran as a function of 16 biophysical variables representative of the area's unique physiography, including topography and coastal placement, biophysical environment, and forests. Basic to this study is the development of moderate-resolution biophysical surfaces and associated plot-estimates for 202 permanent sampling plots. The biophysical variables include: (i) three topographic variables generated directly from the area's digital terrain model; (ii) four ecophysiologically-relevant variables derived from process models or from first principles; and (iii) seven variables of Landsat-8-acquired surface reflectance and two, of surface radiance. With symbolic regression, it was shown that only four of the 16 variables were needed to explain 85% of observed plot-level variation in SR (i.e., wind velocity, surface reflectance of blue light, and topographic wetness indices representative of soil water content), yielding mean-absolute and root-mean-squared error of 0.50 and 0.78, respectively. Overall, localised calculations of wind velocity and surface reflectance of blue light explained about 63% of observed variation in SR, with wind velocity accounting for 51% of that variation. The remaining 22% was explained by linear combinations of soil-water-related topographic indices and associated thresholds. In general, SR and diversity tended to be greatest for plots dominated by Carpinus betulus (involving ≥ 33% of all trees in a plot), than by Fagus orientalis (median difference of one species). This study provides a significant step towards describing landscape variation in SR as a function of modelled and satellite-based information and symbolic regression. Methods in this study are sufficiently general to be

Landscape variation in tree species richness in northern Iran forests.

Directory of Open Access Journals (Sweden)

Charles P-A Bourque

Full Text Available Mapping landscape variation in tree species richness (SR is essential to the long term management and conservation of forest ecosystems. The current study examines the prospect of mapping field assessments of SR in a high-elevation, deciduous forest in northern Iran as a function of 16 biophysical variables representative of the area's unique physiography, including topography and coastal placement, biophysical environment, and forests. Basic to this study is the development of moderate-resolution biophysical surfaces and associated plot-estimates for 202 permanent sampling plots. The biophysical variables include: (i three topographic variables generated directly from the area's digital terrain model; (ii four ecophysiologically-relevant variables derived from process models or from first principles; and (iii seven variables of Landsat-8-acquired surface reflectance and two, of surface radiance. With symbolic regression, it was shown that only four of the 16 variables were needed to explain 85% of observed plot-level variation in SR (i.e., wind velocity, surface reflectance of blue light, and topographic wetness indices representative of soil water content, yielding mean-absolute and root-mean-squared error of 0.50 and 0.78, respectively. Overall, localised calculations of wind velocity and surface reflectance of blue light explained about 63% of observed variation in SR, with wind velocity accounting for 51% of that variation. The remaining 22% was explained by linear combinations of soil-water-related topographic indices and associated thresholds. In general, SR and diversity tended to be greatest for plots dominated by Carpinus betulus (involving ≥ 33% of all trees in a plot, than by Fagus orientalis (median difference of one species. This study provides a significant step towards describing landscape variation in SR as a function of modelled and satellite-based information and symbolic regression. Methods in this study are sufficiently

DFIG-based offshore wind power plant connected to a single VSC-HVDC operated at variable frequency: Energy yield assessment

International Nuclear Information System (INIS)

De-Prada-Gil, Mikel; Díaz-González, Francisco; Gomis-Bellmunt, Oriol; Sumper, Andreas

2015-01-01

The existence of HVDC (High Voltage Direct Current) transmission systems for remote offshore wind power plants allows devising novel wind plant concepts, which do not need to be synchronized with the main AC grid. This paper proposes an OWPP (offshore wind power plant) design based on variable speed wind turbines driven by DFIGs (doubly fed induction generators) with reduced power electronic converters connected to a single VSC-HVDC converter which operates at variable frequency and voltage within the collection grid. It is aimed to evaluate the influence of the power converter size and wind speed variability within the WPP on energy yield efficiency, as well as to develop a coordinated control between the VSC-HVDC converter and the individual back-to-back reduced power converters of each DFIG-based wind turbine in order to provide control capability for the wind power plant at a reduced cost. To maximise wind power generation by the OWPP, an optimum electrical frequency search algorithm for the VSC-HVDC converter is proposed. Both central wind power plant control level and local wind turbine control level are presented and the performance of the system is validated by means of simulations using MATLAB/Simulink ® . - Highlights: • Influence of converter size and wind speed variability on energy capture efficiency. • Coordinated control between a VSC-HVDC and DFIG WTs with reduced power converters. • Static and dynamic analysis of the performance of the implemented control scheme. • Optimal variable frequency operation to maximize WPP generation at a reduced cost

Low-Frequency Temporal Variability in Mira and Semiregular Variables

Science.gov (United States)

Templeton, Matthew R.; Karovska, M.; Waagen, E. O.

2012-01-01

We investigate low-frequency variability in a large sample of Mira and semiregular variables with long-term visual light curves from the AAVSO International Database. Our aim is to determine whether we can detect and measure long-timescale variable phenomena in these stars, for example photometric variations that might be associated with supergranular convection. We analyzed the long-term light curves of 522 variable stars of the Mira and SRa, b, c, and d classes. We calculated their low-frequency time-series spectra to characterize rednoise with the power density spectrum index, and then correlate this index with other observable characteristics such as spectral type and primary pulsation period. In our initial analysis of the sample, we see that the semiregular variables have a much broader range of spectral index than the Mira types, with the SRb subtype having the broadest range. Among Mira variables we see that the M- and S-type Miras have similarly wide ranges of index, while the C-types have the narrowest with generally shallower slopes. There is also a trend of steeper slope with larger amplitude, but at a given amplitude, a wide range of slopes are seen. The ultimate goal of the project is to identify stars with strong intrinsic red noise components as possible targets for resolved surface imaging with interferometry.

Variations in pore characteristics in high volatile bituminous coals: Implications for coal bed gas content

Science.gov (United States)

Mastalerz, Maria; Drobniak, A.; Strapoc, D.; Solano-Acosta, W.; Rupp, J.

2008-01-01

The Seelyville Coal Member of the Linton Formation (Pennsylvanian) in Indiana was studied to: 1) understand variations in pore characteristics within a coal seam at a single location and compare these variations with changes occurring between the same coal at different locations, 2) elaborate on the influence of mineral-matter and maceral composition on mesopore and micropore characteristics, and 3) discuss implications of these variations for coal bed gas content. The coal is high volatile bituminous rank with R0 ranging from 0.57% to 0.60%. BET specific surface areas (determined by nitrogen adsorption) of the coals samples studied range from 1.8 to 22.9??m2/g, BJH adsorption mesopore volumes from 0.0041 to 0.0339??cm3/g, and micropore volumes (determined by carbon dioxide adsorption) from 0.0315 to 0.0540??cm3/g. The coals that had the largest specific surface areas and largest mesopore volumes occur at the shallowest depths, whereas the smallest values for these two parameters occur in the deepest coals. Micropore volumes, in contrast, are not depth-dependent. In the coal samples examined for this study, mineral-matter content influenced both specific surface area as well as mesopore and micropore volumes. It is especially clear in the case of micropores, where an increase in mineral-matter content parallels the decrease of micropore volume of the coal. No obvious relationships were observed between the total vitrinite content and pore characteristics but, after splitting vitrinite into individual macerals, we see that collotelinite influences both meso- and micropore volume positively, whereas collodetrinite contributes to the reduction of mesopore and micropore volumes. There are large variations in gas content within a single coal at a single location. Because of this variability, the entire thickness of the coal must be desorbed in order to determine gas content reliably and to accurately calculate the level of gas saturation. ?? 2008 Elsevier B.V. All

Effect of advection on variations in zooplankton at a single location near Cabo Nazca, Peru

Energy Technology Data Exchange (ETDEWEB)

Smith, S L; Brink, K H; Santander, H; Cowles, T J; Huyer, A

1980-04-01

Temporal variations in the biomass and species composition of zooplankton at a single midshelf station in an upwelling area off Peru can be explained to a large extent by onshore-offshore advection in the upper 20 m of the water column. During periods of strong or sustained near-surface onshore flow, peaks in biomass of zooplankton were observed at midshelf and typically oceanic species of copepod were collected. In periods of offshore flow at the surface, a copepod capable of migrating into oxygen-depleted layers deeper than 30 m was collected. A simple translocation model of advection applied to the cross-shelf distribution of Paracalanus parvus suggests that the fluctuations in P. pavus observed in the midshelf time-series were closely related to onshore-offshore flow in the upper 20 m. Fluctuations in abundance of the numerically dominant copepod, Acartia tonsa, were apparently affected by near surface flow also. The population age-structure suggests that A. tonsa was growing at maximal rates, due in part to its positive feeding response to the dinoflagellate/diatom assemblage of phytoplankton.

Extraction Methods, Variability Encountered in

NARCIS (Netherlands)

Bodelier, P.L.E.; Nelson, K.E.

2014-01-01

Synonyms Bias in DNA extractions methods; Variation in DNA extraction methods Definition The variability in extraction methods is defined as differences in quality and quantity of DNA observed using various extraction protocols, leading to differences in outcome of microbial community composition

Barium variation in Acropora palmata and Montastrea annularis

Science.gov (United States)

Pingitore, Nicholas E.; Rangel, Yolanda; Kwarteng, Andrew

1989-06-01

The barium contents of Acropora palmata and Montastrea annularis are distinct both in their averages (6 and 9 ppm, respectively) and, more impressively, in their variability (5 to 7 ppm and 6 to 15 ppm). A. palmata contained about 50% more Ba2+ than M. annularis and exhibited more than three times as much variation, as measured by their respective coefficients of variation. In contrast, the means and coefficients of variation of Sr2+ in these groups differed by only 6% and 15%. No obvious environmental or post-depositional causes for the inter-and intra-specific variation of Ba2+ could be found. Previous experiments indicate that the partitioning of Ba2+ into aragonite depends directly on the rate of precipitation. This suggests that Ba2+ does not substitute for Ca2+ but instead is incorporated by occlusion. Since growth rates in A. palmata often exceed those of M. annularis, this appears to be the mechanism which generates higher and more variable concentrations of Ba2+ in A. palmata.

Controls over spatial and seasonal variations on isotopic composition of the precipitation along the central and eastern portion of Brazil.

Science.gov (United States)

Gastmans, Didier; Santos, Vinícius; Galhardi, Juliana Aparecida; Gromboni, João Felipe; Batista, Ludmila Vianna; Miotlinski, Konrad; Chang, Hung Kiang; Govone, José Silvio

2017-10-01

Based on Global Network Isotopes in Precipitation (GNIP) isotopic data set, a review of the spatial and temporal variability of δ 18 O and δ 2 H in precipitation was conducted throughout central and eastern Brazil, indicating that dynamic interactions between Intertropical and South Atlantic Convergence Zones, Amazon rainforest, and Atlantic Ocean determine the variations on the isotopic composition of precipitation over this area. Despite the seasonality and latitude effects observed, a fair correlation with precipitation amount was found. In addition, Hybrid Single-Particle Lagrangian Integrated Trajectory (HYSPLIT) air mass back trajectories were used to quantify the factors controlling daily variability in stable isotopes in precipitation. Through a linear multiple regression analysis, it was observed that temporal variations were consistent with the meteorological parameters derived from HYSPLIT, particularly precipitation amount along the trajectory and mix depth, but are not dependent on vapour residence time in the atmosphere. These findings also indicate the importance of convective systems to control the isotopic composition of precipitation in tropical and subtropical regions.

Using the Screened Coulomb Potential to Illustrate the Variational Method

Science.gov (United States)

Zuniga, Jose; Bastida, Adolfo; Requena, Alberto

2012-01-01

The screened Coulomb potential, or Yukawa potential, is used to illustrate the application of the single and linear variational methods. The trial variational functions are expressed in terms of Slater-type functions, for which the integrals needed to carry out the variational calculations are easily evaluated in closed form. The variational…

Holocene hydrologic variation at Lake Titicaca, Bolivia/Peru, and its relationship to North Atlantic climate variation

Science.gov (United States)

Baker, P. A.; Fritz, S. C.; Garland, J.; Ekdahl, E.

2005-10-01

A growing number of sites in the Northern Hemisphere show centennial- to millennial-scale climate variation that has been correlated with change in solar variability or with change in North Atlantic circulation. However, it is unclear how (or whether) these oscillations in the climate system are manifest in the Southern Hemisphere because of a lack of sites with suitably high sampling resolution. In this paper, we reconstruct the lake-level history of Lake Titicaca, using the carbon isotopic content of sedimentary organic matter, to evaluate centennial- to millennial-scale precipitation variation and its phasing relative to sites in the Northern Hemisphere. The pattern and timing of lake-level change in Lake Titicaca is similar to the ice-rafted debris record of Holocene Bond events, demonstrating a possible coupling between precipitation variation on the Altiplano and North Atlantic sea-surface temperatures (SSTs). The cold periods of the Holocene Bond events correspond with periods of increased precipitation on the Altiplano. Holocene precipitation variability on the Altiplano is anti-phased with respect to precipitation in the Northern Hemisphere monsoon region. More generally, the tropical Andes underwent large changes in precipitation on centennial-to-millennial timescales during the Holocene.

IG and TR single chain fragment variable (scFv) sequence analysis: a new advanced functionality of IMGT/V-QUEST and IMGT/HighV-QUEST.

Science.gov (United States)

Giudicelli, Véronique; Duroux, Patrice; Kossida, Sofia; Lefranc, Marie-Paule

2017-06-26

IMGT®, the international ImMunoGeneTics information system® ( http://www.imgt.org ), was created in 1989 in Montpellier, France (CNRS and Montpellier University) to manage the huge and complex diversity of the antigen receptors, and is at the origin of immunoinformatics, a science at the interface between immunogenetics and bioinformatics. Immunoglobulins (IG) or antibodies and T cell receptors (TR) are managed and described in the IMGT® databases and tools at the level of receptor, chain and domain. The analysis of the IG and TR variable (V) domain rearranged nucleotide sequences is performed by IMGT/V-QUEST (online since 1997, 50 sequences per batch) and, for next generation sequencing (NGS), by IMGT/HighV-QUEST, the high throughput version of IMGT/V-QUEST (portal begun in 2010, 500,000 sequences per batch). In vitro combinatorial libraries of engineered antibody single chain Fragment variable (scFv) which mimic the in vivo natural diversity of the immune adaptive responses are extensively screened for the discovery of novel antigen binding specificities. However the analysis of NGS full length scFv (~850 bp) represents a challenge as they contain two V domains connected by a linker and there is no tool for the analysis of two V domains in a single chain. The functionality "Analyis of single chain Fragment variable (scFv)" has been implemented in IMGT/V-QUEST and, for NGS, in IMGT/HighV-QUEST for the analysis of the two V domains of IG and TR scFv. It proceeds in five steps: search for a first closest V-REGION, full characterization of the first V-(D)-J-REGION, then search for a second V-REGION and full characterization of the second V-(D)-J-REGION, and finally linker delimitation. For each sequence or NGS read, positions of the 5'V-DOMAIN, linker and 3'V-DOMAIN in the scFv are provided in the 'V-orientated' sense. Each V-DOMAIN is fully characterized (gene identification, sequence description, junction analysis, characterization of mutations and amino

Investigation of variation of additional enthalpy of proteins with respect to pH by statistical mechanical methods

International Nuclear Information System (INIS)

Oylumoglu, G.

2005-01-01

In this study variation of additional enthalpy with respect to pH has been investigated by the statistical mechanical methods.. To bring up the additional effect, the partition function of the proteins are calculated by single protein molecule approximation. From the partition function, free energies of the proteins are obtained and by this way additional free energy has been used in the calculation of the terms in the thermodynamical quantity. Additional enthalpy H D has been obtained by taking effective electric field E and constant dipole moment M as thermodynamical variables and using Maxwell Equations. In the presented semi phenomenological theory, necessary data are taken from the experimental study of P.L. Privalov. The variation in the additional enthalpy H D has been investigated in the pH interval of 1-5 and the results of the calculations are discussed for Lysozyme

Long-Period Variability in o Ceti

Science.gov (United States)

Templeton, Matthew R.; Karovska, Margarita

2009-02-01

We carried out a new and sensitive search for long-period variability in the prototype of the Mira class of long-period pulsating variables, o Ceti (Mira A), the closest and brightest Mira variable. We conducted this search using an unbroken light curve from 1902 to the present, assembled from the visual data archives of five major variable star observing organizations from around the world. We applied several time-series analysis techniques to search for two specific kinds of variability: long secondary periods (LSPs) longer than the dominant pulsation period of ~333 days, and long-term period variation in the dominant pulsation period itself. The data quality is sufficient to detect coherent periodic variations with photometric amplitudes of 0.05 mag or less. We do not find evidence for coherent LSPs in o Ceti to a limit of 0.1 mag, where the amplitude limit is set by intrinsic, stochastic, low-frequency variability of approximately 0.1 mag. We marginally detect a slight modulation of the pulsation period similar in timescale to that observed in the Miras with meandering periods, but with a much lower period amplitude of ±2 days. However, we do find clear evidence of a low-frequency power-law component in the Fourier spectrum of o Ceti's long-term light curve. The amplitude of this stochastic variability is approximately 0.1 mag at a period of 1000 days, and it exhibits a turnover for periods longer than this. This spectrum is similar to the red noise spectra observed in red supergiants.

Crystallization and preliminary crystallographic studies of the single-chain variable fragment of antibody chA21 in complex with an N-terminal fragment of ErbB2

International Nuclear Information System (INIS)

Liu, Yang; Zhou, Huihao; Zhu, Juanjuan; Gao, Yongxiang; Niu, Liwen; Liu, Jing; Teng, Maikun

2009-01-01

An antibody–antigen complex consisting of a single-chain variable fragment of the potential therapeutic antibody chA21 and an N-terminal fragment (residues 1–192) of the human ErbB2 extracellular domain was expressed, purified and crystallized. X-ray diffraction data were collected to 2.45 Å resolution. ErbB2 is a transmembrane tyrosine kinase, the overexpression of which causes abnormality and disorder in cell signalling and leads to cell transformation. Previously, an anti-ErbB2 single-chain chimeric antibody chA21 that specifically inhibits the growth of ErbB2-overexpressing cancer cells in vitro and in vivo was developed. Here, an antibody–antigen complex consisting of the single-chain variable fragment (scFv) of chA21 and an N-terminal fragment (residues 1–192, named EP I) of the ErbB2 extracellular domain was crystallized using the sitting-drop vapour-diffusion method. An X-ray diffraction data set was collected to 2.45 Å resolution from a single flash-cooled crystal; the crystal belonged to space group P2 1 2 1 2 1

Single-rooted maxillary first molar with a single canal: endodontic retreatment.

Science.gov (United States)

de la Torre, Francisco; Cisneros-Cabello, Rafael; Aranguren, José Luis; Estévez, Roberto; Velasco-Ortega, Eugenio; Segura-Egea, Juan José

2008-12-01

This case report presents an unusual root canal system in a maxillary first molar tooth: a single canal in a single root. The endodontic access cavity displayed only 1 canal orifice. This case demonstrated that: 1) clinicians must have adequate knowledge about root canal morphology and its variations; 2) the location and morphology of root canals should be identified radiologically before the root canal treatment; and 3) careful examination of radiographs and the internal anatomy of teeth is essential.

Single walled carbon nanotubes on MHD unsteady flow over a porous wedge with thermal radiation with variable stream conditions

Directory of Open Access Journals (Sweden)

R. Kandasamy

2016-03-01

Full Text Available The objective of the present work was to investigate theoretically the effect of single walled carbon nanotubes (SWCNTs in the presence of water and seawater with variable stream condition due to solar radiation energy. The conclusion is drawn that the flow motion and the temperature field for SWCNTs in the presence of base fluid are significantly influenced by magnetic field, convective radiation and thermal stratification. Thermal boundary layer of SWCNTs-water is compared to that of Cu-water, absorbs the incident solar radiation and transits it to the working fluid by convection.

On the mid-infrared variability of candidate eruptive variables (exors): A comparison between Spitzer and WISE data

Energy Technology Data Exchange (ETDEWEB)

Antoniucci, S.; Giannini, T.; Li Causi, G.; Lorenzetti, D., E-mail: simone.antoniucci@oa-roma.inaf.it, E-mail: teresa.giannini@oa-roma.inaf.it, E-mail: gianluca.licausi@oa-roma.inaf.it, E-mail: dario.lorenzetti@oa-roma.inaf.it [INAF-Osservatorio Astronomico di Roma, via Frascati 33, I-00040 Monte Porzio (Italy)

2014-02-10

Aiming to statistically study the variability in the mid-IR of young stellar objects, we have compared the 3.6, 4.5, and 24 μm Spitzer fluxes of 1478 sources belonging to the C2D (Cores to Disks) legacy program with the WISE fluxes at 3.4, 4.6, and 22 μm. From this comparison, we have selected a robust sample of 34 variable sources. Their variations were classified per spectral Class (according to the widely accepted scheme of Class I/flat/II/III protostars), and per star forming region. On average, the number of variable sources decreases with increasing Class and is definitely higher in Perseus and Ophiuchus than in Chamaeleon and Lupus. According to the paradigm Class ≡ Evolution, the photometric variability can be considered to be a feature more pronounced in less evolved protostars, and, as such, related to accretion processes. Moreover, our statistical findings agree with the current knowledge of star formation activity in different regions. The 34 selected variables were further investigated for similarities with known young eruptive variables, namely the EXors. In particular, we analyzed (1) the shape of the spectral energy distribution, (2) the IR excess over the stellar photosphere, (3) magnitude versus color variations, and (4) output parameters of model fitting. This first systematic search for EXors ends up with 11 bona fide candidates that can be considered as suitable targets for monitoring or future investigations.

Exchange rate variability, market activity and heterogeneity

OpenAIRE

Rime, Dagfinn; Sucarrat, Genaro

2007-01-01

We study the role played by geographic and bank-size heterogeneity in the relation between exchange rate variability and market activity. We find some support for the hypothesis that increases in short-term global interbank market activity, which can be interpreted as due to variation in information arrival, increase variability. However, our results do not suggest that local short-term activity increases variability. With respect to long-term market activity, which can be interpreted as a me...

New Variable Stars Discovered by Data Mining Images Taken during Recent Asteroid Photometric Observations. II. Results from July 2015 through December 2016

Science.gov (United States)

Papini, R.; Marchini, A.; Salvaggio, F.; Agnetti, D.; Bacci, P.; Banfi, M.; Bianciardi, G.; Collina, M.; Franco, L.; Galli, G.; Milani, M. G. A.; Lopresti, C.; Marino, G.; Rizzuti, L.; Ruocco, N.; Quadri, U.

2017-12-01

This paper follows the previous publication of new variables discovered at Astronomical Observatory, DSFTA, University of Siena, while observing asteroids in order to determine their rotational periods. Usually, this task requires time series images acquisition on a single field for as long as possible on a few nights not necessarily consecutive. Checking continually this "goldmine" allowed us to discover 57 variable stars not yet listed in catalogues or databases. While most of the new variables are eclipsing binaries, a few belong to the RR Lyrae or delta Scuti class. Since asteroid work is definitely a time-consuming activity, coordinated campaigns of follow-up with other observatories have been fundamental in order to determine the elements of the ephemeris and sometimes the right subclass of variability. Further observations of these new variables are therefore strongly encouraged in order to better characterize these stars, especially pulsating ones whose data combined with those taken during professional surveys seem to suggest the presence of light curve amplitude and period variations.

Variable uptake feature of focal nodular hyperplasia in Tc-99m phytate hepatic scintigraphy/single-photon emission computed tomography-A parametric analysis.

Science.gov (United States)

Hsu, Yu-Ling; Chen, Yu-Wen; Lin, Chia-Yang; Lai, Yun-Chang; Chen, Shinn-Cherng; Lin, Zu-Yau

2015-12-01

Tc-99m phytate hepatic scintigraphy remains the standard method for evaluating the functional features of Kupffer cells. In this study, we demonstrate the variable uptake feature of focal nodular hyperplasia (FNH) in Tc-99m phytate scintigraphy. We reviewed all patients who underwent Tc-99m phytate hepatic scintigraphy between 2008 and 2012 in Kaohsiung Medical University Hospital, Kaohsiung, Taiwan. Cases with FNH were diagnosed on the basis of pathology or at least one or more prior imaging with a periodic clinical follow-up. All patients received a standard protocol of dynamic flow study and planar and Tc-99m phytate single-photon emission computed tomography (E. CAM; Siemens). The correlation of variable nodular radioactivity with parameters such as tumor size and localization was analyzed. In total, 15 lesions of 14 patients in the clinic were diagnosed as FNH. The tumor size was approximately 2.9-7.4 cm (mean size 4.6 cm). Four lesions were larger than 5 cm. The major anatomic distribution was in the right hepatic lobe (10 lesions), particularly in the superior segments (7 lesions). Tc-99m phytate single-photon emission computed tomography imaging for determining the functional features of Kupffer cells included cool/cold (8 lesions), isoradioactive/warm (6 lesions), and hot (1 lesion) patterns of uptake. We did not observe any statistically significant correlation between variable nodular radioactivity and tumor size (p=0.68) or localization (p=0.04). Herein, we demonstrate the variable uptake feature of FNH in Tc-99m phytate scintigraphy. In small FNH tumors (< 5 cm), increased or equal uptake still provided specificity for the differential diagnosis of hepatic solid tumors. Copyright © 2015. Published by Elsevier Taiwan.

A preliminary characterization of the spatial variability of precipitation at Yucca Mountain, Nevada

International Nuclear Information System (INIS)

Hevesi, J.A.; Flint, A.L.; Ambos, D.S.

1994-01-01

Isohyetal maps of precipitation and numerical models for simulating precipitation are needed to help characterize natural infiltration at Yucca Mountain, Nevada. A geostatistical analysis of measured precipitation accumulated from storm periods. Precipitation was measured during a 3.8 year period from January 1990 to October, 1993 using a network of precipitation gages. A total of 34 winter-type storms and 12 summer-type storm, categorized using synoptic weather records, were analyzed using the 1st and 2nd statistical moments and sample variograms. Average standardized variograms indicated good spatial correlation for both storm types with only slight differences in the general spatial structure. Coefficients of variation and average relative variograms indicated that summer storms are characterized by greater variability as compared to winter storms. Models were fitted to the average summer and winter standarized variograms for each storm using the mean storm depth and the coefficient of variation as scaling parameters. Isohyetal maps of 4 representative storms were created using the standarized models. Results indicate that standarized models can be used to simulate the spatial distribution of precipitation depth, provided that the 1st and 2nd moments are known or can be estimated, and that identifiable deterministic trends can be included in the models. A single, fixed model representing the spatial variability of precipitation at Yucca Mountain is not recommended

Short-Term Intra-Subject Variation in Exhaled Volatile Organic Compounds (VOCs in COPD Patients and Healthy Controls and Its Effect on Disease Classification

Directory of Open Access Journals (Sweden)

Christopher Phillips

2014-05-01

Full Text Available Exhaled volatile organic compounds (VOCs are of interest for their potential to diagnose disease non-invasively. However, most breath VOC studies have analyzed single breath samples from an individual and assumed them to be wholly consistent representative of the person. This provided the motivation for an investigation of the variability of breath profiles when three breath samples are taken over a short time period (two minute intervals between samples for 118 stable patients with Chronic Obstructive Pulmonary Disease (COPD and 63 healthy controls and analyzed by gas chromatography and mass spectroscopy (GC/MS. The extent of the variation in VOC levels differed between COPD and healthy subjects and the patterns of variation differed for isoprene versus the bulk of other VOCs. In addition, machine learning approaches were applied to the breath data to establish whether these samples differed in their ability to discriminate COPD from healthy states and whether aggregation of multiple samples, into single data sets, could offer improved discrimination. The three breath samples gave similar classification accuracy to one another when evaluated separately (66.5% to 68.3% subjects classified correctly depending on the breath repetition used. Combining multiple breath samples into single data sets gave better discrimination (73.4% subjects classified correctly. Although accuracy is not sufficient for COPD diagnosis in a clinical setting, enhanced sampling and analysis may improve accuracy further. Variability in samples, and short-term effects of practice or exertion, need to be considered in any breath testing program to improve reliability and optimize discrimination.

An Attempt To Estimate The Contribution Of Variability Of Wetland Extent On The Variability Of The Atmospheric Methane Growth Rate In The Years 1993-2000.

Science.gov (United States)

Ringeval, B.; de Noblet-Ducoudre, N.; Prigent, C.; Bousquet, P.

2006-12-01

The atmospheric methane growth rate presents lots of seasonal and year-to-year variations. Large uncertainties still exist in the relative part of differents sources and sinks on these variations. We have considered, in this study, the main natural sources of methane and the supposed main variable source, i.e. wetlands, and tried to simulate the variations of their emissions considering the variability of the wetland extent and of the climate. For this study, we use the methane emission model of Walter et al. (2001) and the quantification of the flooded areas for the years 1993-2000 obtained with a suite of satellite observations by Prigent et al. (2001). The data necessary to the Walter's model are obtained with simulation of a dynamic global vegetation model ORCHIDEE (Krinner et al. (2005)) constrained by the NCC climate data (Ngo-Duc et al. (2005)) and after imposing a water-saturated soil to approach productivity of wetlands. We calculate global annual methane emissions from wetlands to be 400 Tg per year, that is higher than previous results obtained with fixed wetland extent. Simulations are realised to estimate the part of variability in the emissions explained by the variability of the wetland extent. It seems that the year-to-year emission variability is mainly explained by the interannual variability of wetland extent. The seasonnal variability is explained for 75% in the tropics and only for 40% in the north of 30°N by variability of wetlands extend. Finally, we compare results with a top-down approach of Bousquet et al.(2006).

Spatial variation of particle number concentration in school microscale environments and its impact on exposure assessment.

Science.gov (United States)

Salimi, Farhad; Mazaheri, Mandana; Clifford, Sam; Crilley, Leigh R; Laiman, Rusdin; Morawska, Lidia

2013-05-21

It has not yet been established whether the spatial variation of particle number concentration (PNC) within a microscale environment can have an effect on exposure estimation results. In general, the degree of spatial variation within microscale environments remains unclear, since previous studies have only focused on spatial variation within macroscale environments. The aims of this study were to determine the spatial variation of PNC within microscale school environments, in order to assess the importance of the number of monitoring sites on exposure estimation. Furthermore, this paper aims to identify which parameters have the largest influence on spatial variation as well as the relationship between those parameters and spatial variation. Air quality measurements were conducted for two consecutive weeks at each of the 25 schools across Brisbane, Australia. PNC was measured at three sites within the grounds of each school, along with the measurement of meteorological and several other air quality parameters. Traffic density was recorded for the busiest road adjacent to the school. Spatial variation at each school was quantified using coefficient of variation (CV). The portion of CV associated with instrument uncertainty was found to be 0.3, and, therefore, CV was corrected so that only noninstrument uncertainty was analyzed in the data. The median corrected CV (CVc) ranged from 0 to 0.35 across the schools, with 12 schools found to exhibit spatial variation. The study determined the number of required monitoring sites at schools with spatial variability and tested the deviation in exposure estimation arising from using only a single site. Nine schools required two measurement sites and three schools required three sites. Overall, the deviation in exposure estimation from using only one monitoring site was as much as 1 order of magnitude. The study also tested the association of spatial variation with wind speed/direction and traffic density, using partial

Single photon sources in 4H-SiC metal-oxide-semiconductor field-effect transistors

Science.gov (United States)

Abe, Y.; Umeda, T.; Okamoto, M.; Kosugi, R.; Harada, S.; Haruyama, M.; Kada, W.; Hanaizumi, O.; Onoda, S.; Ohshima, T.

2018-01-01

We present single photon sources (SPSs) embedded in 4H-SiC metal-oxide-semiconductor field-effect transistors (MOSFETs). They are formed in the SiC/SiO2 interface regions of wet-oxidation C-face 4H-SiC MOSFETs and were not found in other C-face and Si-face MOSFETs. Their bright room-temperature photoluminescence (PL) was observed in the range from 550 to 750 nm and revealed variable multi-peak structures as well as variable peak shifts. We characterized a wide variety of their PL spectra as the inevitable variation of local atomic structures at the interface. Their polarization dependence indicates that they are formed at the SiC side of the interface. We also demonstrate that it is possible to switch on/off the SPSs by a bias voltage of the MOSFET.

Between-game variation of physical soccer performance measures in highly trained youth soccer players.

Science.gov (United States)

Doncaster, Greg; Unnithan, Viswanath

2017-07-12

To assess the between-game variation in measures of physical performance during 11 v 11 soccer match-play, over a short period of time, in highly trained youth soccer players. A single cohort observational study design was employed. Physical match performance data were collected from 17 male, highly trained youth soccer players (age: 13.3 ± 0.4 y) over three, 2 x 20min, 11 v 11 matches. Using 10 Hz GPS, the variables selected for analyses were total distance (TD), high-speed running (HSR), very high-speed running (VHSR), number of high-speed running efforts (HSReff) and number of very high-speed running efforts (VHSReff). Match data was also separated into cumulative 5 min epochs, to identify the peak 5 min epoch and the mean of the cumulative 5 min epochs for each match. Variability was quantified using the coefficient of variation (CV), Standard error of measurement (SEM) and intra-class correlation coefficient (ICC). Between- and within-player smallest worthwhile changes (SWC) were also calculated for each variable to aid in the interpretation of the data. Analysis of the variance between games reported a low CV for TD (3.8%) but larger CVs for HSR (33.3%), HSReff (35.4%) and VHSR and VHSReff (59.6 and 57.4 %, respectively). Analysis of 5 min epochs (peak and average) found an increase in the CVs beyond that of the values reported for the whole match. Between-player SWC in high intensity physical performance data ranged from 24.7 - 42.4 %, whereas within-player SWC ranged from 1.2 - 79.9%. The between-game variability of high and very high intensity activities in youth soccer players, across three soccer matches over a short period of time (2 weeks), is relatively 'large' and specific to the individual, thus highlighting the need for caution when interpreting physical performance data between games and players.

Genetic variability, heritability and genetic advance of quantitative ...

African Journals Online (AJOL)

Genetic variation has led to an increase in the quantitative traits of crops. The variability on genome is induced by mutation, which enhances the productivity. We evaluated variability on quantitative characters such as, plant height, number of branches/plant, number of leaves/plant, number of fruit clusters/plant, number of ...

Tides and Decadal Variability

Science.gov (United States)

Ray, Richard D.

2003-01-01

This paper reviews the mechanisms by which oceanic tides and decadal variability in the oceans are connected. We distinguish between variability caused by tides and variability observed in the tides themselves. Both effects have been detected at some level. The most obvious connection with decadal timescales is through the 18.6-year precession of the moon's orbit plane. This precession gives rise to a small tide of the same period and to 18.6-year modulations in the phase and amplitudes of short-period tides. The 18.6-year "node tide" is very small, no more than 2 cm anywhere, and in sea level data it is dominated by the ocean's natural Variability. Some authors have naively attributed climate variations with periods near 19 years directly to the node tide, but the amplitude of the tide is too small for this mechanism to be operative. The more likely explanation (Loder and Garrett, JGR, 83, 1967-70, 1978) is that the 18.6-y modulations in short-period tides, especially h e principal tide M2, cause variations in ocean mixing, which is then observed in temperature and other climatic indicators. Tidally forced variability has also been proposed by some authors, either in response to occasional (and highly predictable) tidal extremes or as a nonlinear low-frequency oscillation caused by interactions between short-period tides. The former mechanism can produce only short-duration events hardly more significant than normal tidal ranges, but the latter mechanism can in principle induce low-frequency oscillations. The most recent proposal of this type is by Keeling and Whorf, who highlight the 1800-year spectral peak discovered by Bond et al. (1997). But the proposal appears contrived and should be considered, in the words of Munk et al. (2002), "as the most likely among unlikely candidates."

Measuring single-cell density.

Science.gov (United States)

Grover, William H; Bryan, Andrea K; Diez-Silva, Monica; Suresh, Subra; Higgins, John M; Manalis, Scott R

2011-07-05

We have used a microfluidic mass sensor to measure the density of single living cells. By weighing each cell in two fluids of different densities, our technique measures the single-cell mass, volume, and density of approximately 500 cells per hour with a density precision of 0.001 g mL(-1). We observe that the intrinsic cell-to-cell variation in density is nearly 100-fold smaller than the mass or volume variation. As a result, we can measure changes in cell density indicative of cellular processes that would be otherwise undetectable by mass or volume measurements. Here, we demonstrate this with four examples: identifying Plasmodium falciparum malaria-infected erythrocytes in a culture, distinguishing transfused blood cells from a patient's own blood, identifying irreversibly sickled cells in a sickle cell patient, and identifying leukemia cells in the early stages of responding to a drug treatment. These demonstrations suggest that the ability to measure single-cell density will provide valuable insights into cell state for a wide range of biological processes.

Network hubs buffer environmental variation in Saccharomyces cerevisiae.

Directory of Open Access Journals (Sweden)

Sasha F Levy

2008-11-01

Full Text Available Regulatory and developmental systems produce phenotypes that are robust to environmental and genetic variation. A gene product that normally contributes to this robustness is termed a phenotypic capacitor. When a phenotypic capacitor fails, for example when challenged by a harsh environment or mutation, the system becomes less robust and thus produces greater phenotypic variation. A functional phenotypic capacitor provides a mechanism by which hidden polymorphism can accumulate, whereas its failure provides a mechanism by which evolutionary change might be promoted. The primary example to date of a phenotypic capacitor is Hsp90, a molecular chaperone that targets a large set of signal transduction proteins. In both Drosophila and Arabidopsis, compromised Hsp90 function results in pleiotropic phenotypic effects dependent on the underlying genotype. For some traits, Hsp90 also appears to buffer stochastic variation, yet the relationship between environmental and genetic buffering remains an important unresolved question. We previously used simulations of knockout mutations in transcriptional networks to predict that many gene products would act as phenotypic capacitors. To test this prediction, we use high-throughput morphological phenotyping of individual yeast cells from single-gene deletion strains to identify gene products that buffer environmental variation in Saccharomyces cerevisiae. We find more than 300 gene products that, when absent, increase morphological variation. Overrepresented among these capacitors are gene products that control chromosome organization and DNA integrity, RNA elongation, protein modification, cell cycle, and response to stimuli such as stress. Capacitors have a high number of synthetic-lethal interactions but knockouts of these genes do not tend to cause severe decreases in growth rate. Each capacitor can be classified based on whether or not it is encoded by a gene with a paralog in the genome. Capacitors with a

Cigarette price level and variation in five Southeast Asian countries.

Science.gov (United States)

Liber, Alex C; Ross, Hana; Ratanachena, Sophapan; Dorotheo, E Ulysses; Foong, Kin

2015-06-01

To monitor and analyse impacts of the interaction between tobacco excise tax policy and industry price strategy, on the price level and variation of cigarettes sold in five Southeast Asian countries (Indonesia, Cambodia, Lao PDR, the Philippines and Vietnam). Prices of cigarette sold by sticks and packs were collected through an in-person survey of retailers during 2011. Mean cigarette prices and price variation were calculated in each study country for single cigarettes, whole packs and brand groups. Price variation of whole packs was greater in countries with ad-valorem excise tax structures (Cambodia, Lao PDR and Vietnam) than in countries with multitiered specific excise taxes (Indonesia and the Philippines). The price variation for single sticks appeared to be driven by local currency denomination. Cigarettes sold individually cost more per stick than cigarettes sold in whole packs in every brand group except for Indonesia's domestic brands. Tobacco industry strategy and excise tax structure drove the price level and variation of cigarettes sold in packs, while currency denominations influence the selling price of single sticks. To maximise the effectiveness of tobacco tax policies, countries should adopt specific excise tax structures to decrease cigarette price variation, which would minimise opportunities for smokers to 'trade down' to a cheaper brand to avoid a tax-driven price increase. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Variational approach to nuclear fluid dynamics

International Nuclear Information System (INIS)

Da Providencia, J.P.; Holzwarth, G.

1983-01-01

A variational derivation of a fluid-dynamical formalism for finite Fermi systems is presented which is based on a single determinant as variational function and does not exclude the possibility of transverse flow. Therefore the explicit specification of the time-odd part has to go beyond the local chi-approximation, while the time-even part is taken in the generalized scaling form. The necessary boundary conditions are derived from the variation of the lagrangian. The results confirm previous simplified approaches to a remarkable degree for quadrupole modes; for other multipolarities the deviations are much less than might be expected according to a sizeable change in the transverse sound speed. (orig.)

Genetic Variations Involved in Vitamin E Status

Directory of Open Access Journals (Sweden)

Patrick Borel

2016-12-01

Full Text Available Vitamin E (VE is the generic term for four tocopherols and four tocotrienols that exhibit the biological activity of α-tocopherol. VE status, which is usually estimated by measuring fasting blood VE concentration, is affected by numerous factors, such as dietary VE intake, VE absorption efficiency, and VE catabolism. Several of these factors are in turn modulated by genetic variations in genes encoding proteins involved in these factors. To identify these genetic variations, two strategies have been used: genome-wide association studies and candidate gene association studies. Each of these strategies has its advantages and its drawbacks, nevertheless they have allowed us to identify a list of single nucleotide polymorphisms associated with fasting blood VE concentration and α-tocopherol bioavailability. However, much work remains to be done to identify, and to replicate in different populations, all the single nucleotide polymorphisms involved, to assess the possible involvement of other kind of genetic variations, e.g., copy number variants and epigenetic modifications, in order to establish a reliable list of genetic variations that will allow us to predict the VE status of an individual by knowing their genotype in these genetic variations. Yet, the potential usefulness of this area of research is exciting with regard to personalized nutrition and for future clinical trials dedicated to assessing the biological effects of the various isoforms of VE.

Seasonal variation of heavy metals in ambient air and precipitation at a single site in Washington, DC

International Nuclear Information System (INIS)

Melaku, Samuel; Morris, Vernon; Raghavan, Dharmaraj; Hosten, Charles

2008-01-01

Atmospheric samples of precipitation and ambient air were collected at a single site in Washington, DC, for 7 months (for ambient air samples) and 1 year (for wet deposition samples) and analyzed for arsenic, cadmium, chromium and lead. The ranges of heavy metal concentrations for 6-day wet deposition samples collected over the 1-year period were 0.20-1.3 μg/l, 0.060-5.1 μg/l, 0.062-4.6 μg/l and 0.11-3.2 μg/l for arsenic, cadmium, chromium and lead, respectively, with a precision better than 5% for more than 95% of the measurements. The ranges of heavy metal concentrations for the 6-day ambient air samples were 0.800-15.7 ng/m 3 , 1.50-30.0 ng/m 3 , 16.8-112 ng/m 3 , and 2.90-137 ng/m 3 for arsenic, cadmium, chromium and lead, respectively, with a precision better than 10%. The spread in the heavy metal concentration over the observation period suggests a high seasonal variability for heavy metal content in both ambient air and wet deposition samples. - High seasonal variability of heavy metals were observed in both ambient air and wet deposition samples

Spinal Surgeon Variation in Single-Level Cervical Fusion Procedures: A Cost and Hospital Resource Utilization Analysis.

Science.gov (United States)

Hijji, Fady Y; Massel, Dustin H; Mayo, Benjamin C; Narain, Ankur S; Long, William W; Modi, Krishna D; Burke, Rory M; Canar, Jeff; Singh, Kern

2017-07-01

Retrospective analysis. To compare perioperative costs and outcomes of patients undergoing single-level anterior cervical discectomy and fusions (ACDF) at both a service (orthopedic vs. neurosurgical) and individual surgeon level. Hospital systems are experiencing significant pressure to increase value of care by reducing costs while maintaining or improving patient-centered outcomes. Few studies have examined the cost-effectiveness cervical arthrodesis at a service level. A retrospective review of patients who underwent a primary 1-level ACDF by eight surgeons (four orthopedic and four neurosurgical) at a single academic institution between 2013 and 2015 was performed. Patients were identified by Diagnosis-Related Group and procedural codes. Patients with the ninth revision of the International Classification of Diseases coding for degenerative cervical pathology were included. Patients were excluded if they exhibited preoperative diagnoses or postoperative social work issues affecting their length of stay. Comparisons of preoperative demographics were performed using Student t tests and chi-squared analysis. Perioperative outcomes and costs for hospital services were compared using multivariate regression adjusted for preoperative characteristics. A total of 137 patients diagnosed with cervical degeneration underwent single-level ACDF; 44 and 93 were performed by orthopedic surgeons and neurosurgeons, respectively. There was no difference in patient demographics. ACDF procedures performed by orthopedic surgeons demonstrated shorter operative times (89.1 ± 25.5 vs. 96.0 ± 25.5 min; P = 0.002) and higher laboratory costs (Δ+$6.53 ± $5.52 USD; P = 0.041). There were significant differences in operative time (P = 0.014) and labor costs (P = 0.034) between individual surgeons. There was no difference in total costs between specialties or individual surgeons. Surgical subspecialty training does not significantly affect total costs of

Development of anti-bovine IgA single chain variable fragment and its application in diagnosis of foot-and-mouth disease

Science.gov (United States)

Sridevi, N. V.; Shukra, A. M.; Neelakantam, B.; Anilkumar, J.; Madhanmohan, M.; Rajan, S.; Dev Chandran

2014-01-01

Recombinant antibody fragments like single chain variable fragments (scFvs) represent an attractive yet powerful alternative to immunoglobulins and hold great potential in the development of clinical diagnostic/therapeutic reagents. Structurally, scFvs are the smallest antibody fragments capable of retaining the antigen-binding capacity of whole antibodies and are composed of an immunoglobulin (Ig) variable light (VL) and variable heavy (VH) chain joined by a flexible polypeptide linker. In the present study, we constructed a scFv against bovine IgA from a hybridoma cell line IL-A71 that secretes a monoclonal antibody against bovine IgA using recombinant DNA technology. The scFv was expressed in Escherichia coli and purified using immobilized metal affinity chromatography (IMAC). The binding activity and specificity of the scFv was established by its non-reactivity toward other classes of immunoglobulins as determined by enzyme-linked immunosorbent assay (ELISA) and immunoblot analysis. Kinetic measurement of the scFv indicated that the recombinant antibody fragment had an affinity in picomolar range toward purified IgA. Furthermore, the scFv was used to develop a sensitive ELISA for the detection of foot and mouth disease virus (FMDV) carrier animals. PMID:24678404

Variable and subset selection in PLS regression

DEFF Research Database (Denmark)

Høskuldsson, Agnar

2001-01-01

The purpose of this paper is to present some useful methods for introductory analysis of variables and subsets in relation to PLS regression. We present here methods that are efficient in finding the appropriate variables or subset to use in the PLS regression. The general conclusion...... is that variable selection is important for successful analysis of chemometric data. An important aspect of the results presented is that lack of variable selection can spoil the PLS regression, and that cross-validation measures using a test set can show larger variation, when we use different subsets of X, than...

Effects of dual-task conditions on cervical spine movement variability.

Science.gov (United States)

Niederer, Daniel; Vogt, Lutz; Vogel, Johanna; Banzer, Winfried

2017-09-22

The potential to accurately perform cervical movements during more challenging tasks might be of importance to prevent dysfunctional motion characteristics. Although sensorimotor function during dual-task conditions are of increasing interest in biomedical and rehabilitation research, effects of such conditions on movement consistency of the neck have not yet been investigated. In this crossover MiSpEx(Medicine in Spine Exercise)-diagnostic study, we aimed to explore differences between single and dual-task conditions on cervical movement variability. Nineteen healthy participants (9 male; 24.5 ± 3.3 y) performed 10 repetitive maximal cervical movements in (1) flexion/extension and (2) lateral flexion, during one single- and during two dual-task test conditions (cognitive, motor) in a randomised and cross-over sequence. Latter consisted of a working memory n-back task (n= 2) and a repetitive ankle movement task. Range of motion (RoM) was assessed using an external three-dimensional ultrasonic movement analysis system. Coefficient of variation (CV) for repetitive RoM was analysed for differences between conditions and controlled for variances in intra-individual movement characteristics. Friedman and post-hoc Bonferroni-adjusted confidence intervals for differences from single- to dual-task values revealed changes in CV in flexion/extension from single-task to motor dual-task (+0.02 ± 0.02 (97.5%CI: 0.01; 0.03); pdual-task condition (+0.01 ± 0.02 (97.5%CI: 0.003; 0.02)) nor for lateral flexion (p> 0.05). Pearson regression analyses revealed a linear negative (pdual-task (R=2 0.55). Results for lateral flexion are comparable, baseline CV negatively impacts differences to cognitive (R=2 0.2) and motor dual-task performance (R=2 0.76; pdual-task conditions while participants with a higher variability remained almost stable or showed a decrease. The results point toward a complex interrelationship of motion patterns and adaptation processes during challenging tasks

Chemical Variability and Biological Activities of Brassica rapa var. rapifera Parts Essential Oils Depending on Geographic Variation and Extraction Technique.

Science.gov (United States)

Saka, Boualem; Djouahri, Abderrahmane; Djerrad, Zineb; Terfi, Souhila; Aberrane, Sihem; Sabaou, Nasserdine; Baaliouamer, Aoumeur; Boudarene, Lynda

2017-06-01

In the present work, the Brassica rapa var. rapifera parts essential oils and their antioxidant and antimicrobial activities were investigated for the first time depending on geographic origin and extraction technique. Gas-chromatography (GC) and GC/mass spectrometry (MS) analyses showed several constituents, including alcohols, aldehydes, esters, ketones, norisoprenoids, terpenic, nitrogen and sulphur compounds, totalizing 38 and 41 compounds in leaves and root essential oils, respectively. Nitrogen compounds were the main volatiles in leaves essential oils and sulphur compounds were the main volatiles in root essential oils. Qualitative and quantitative differences were found among B. rapa var. rapifera parts essential oils collected from different locations and extracted by hydrodistillation and microwave-assisted hydrodistillation techniques. Furthermore, our findings showed a high variability for both antioxidant and antimicrobial activities. The highlighted variability reflects the high impact of plant part, geographic variation and extraction technique on chemical composition and biological activities, which led to conclude that we should select essential oils to be investigated carefully depending on these factors, in order to isolate the bioactive components or to have the best quality of essential oil in terms of biological activities and preventive effects in food. © 2017 Wiley-VHCA AG, Zurich, Switzerland.

Field calculations. Part I: Choice of variables and methods

International Nuclear Information System (INIS)

Turner, L.R.

1981-01-01

Magnetostatic calculations can involve (in order of increasing complexity) conductors only, material with constant or infinite permeability, or material with variable permeability. We consider here only the most general case, calculations involving ferritic material with variable permeability. Variables suitable for magnetostatic calculations are the magnetic field, the magnetic vector potential, and the magnetic scalar potential. For two-dimensional calculations the potentials, which each have only one component, have advantages over the field, which has two components. Because it is a single-valued variable, the vector potential is perhaps the best variable for two-dimensional calculations. In three dimensions, both the field and the vector potential have three components; the scalar potential, with only one component,provides a much smaller system of equations to be solved. However the scalar potential is not single-valued. To circumvent this problem, a calculation with two scalar potentials can be performed. The scalar potential whose source is the conductors can be calculated directly by the Biot-Savart law, and the scalar potential whose source is the magnetized material is single valued. However in some situations, the fields from the two potentials nearly cancel; and the numerical accuracy is lost. The 3-D magnetostatic program TOSCA employs a single total scalar potential; the program GFUN uses the magnetic field as its variable

Client Perceptions of Helpfulness in Therapy: a Novel Video-Rating Methodology for Examining Process Variables at Brief Intervals During a Single Session.

Science.gov (United States)

Cocklin, Alexandra A; Mansell, Warren; Emsley, Richard; McEvoy, Phil; Preston, Chloe; Comiskey, Jody; Tai, Sara

2017-11-01

The value of clients' reports of their experiences in therapy is widely recognized, yet quantitative methodology has rarely been used to measure clients' self-reported perceptions of what is helpful over a single session. A video-rating method using was developed to gather data at brief intervals using process measures of client perceived experience and standardized measures of working alliance (Session Rating Scale; SRS). Data were collected over the course of a single video-recorded session of cognitive therapy (Method of Levels Therapy; Carey, 2006; Mansell et al., 2012). We examined the acceptability and feasibility of the methodology and tested the concurrent validity of the measure by utilizing theory-led constructs. Eighteen therapy sessions were video-recorded and clients each rated a 20-minute session of therapy at two-minute intervals using repeated measures. A multi-level analysis was used to test for correlations between perceived levels of helpfulness and client process variables. The design proved to be feasible. Concurrent validity was borne out through high correlations between constructs. A multi-level regression examined the independent contributions of client process variables to client perceived helpfulness. Client perceived control (b = 0.39, 95% CI .05 to 0.73), the ability to talk freely (b = 0.30, SE = 0.11, 95% CI .09 to 0.51) and therapist approach (b = 0.31, SE = 0.14, 95% CI .04 to 0.57) predicted client-rated helpfulness. We identify a feasible and acceptable method for studying continuous measures of helpfulness and their psychological correlates during a single therapy session.

Horizontal transfer generates genetic variation in an asexual pathogen

Directory of Open Access Journals (Sweden)

Xiaoqiu Huang

2014-10-01

Full Text Available There are major gaps in the understanding of how genetic variation is generated in the asexual pathogen Verticillium dahliae. On the one hand, V. dahliae is a haploid organism that reproduces clonally. On the other hand, single-nucleotide polymorphisms and chromosomal rearrangements were found between V. dahliae strains. Lineage-specific (LS regions comprising about 5% of the genome are highly variable between V. dahliae strains. Nonetheless, it is unknown whether horizontal gene transfer plays a major role in generating genetic variation in V. dahliae. Here, we analyzed a previously sequenced V. dahliae population of nine strains from various geographical locations and hosts. We found highly homologous elements in LS regions of each strain; LS regions of V. dahliae strain JR2 are much richer in highly homologous elements than the core genome. In addition, we discovered, in LS regions of JR2, several structural forms of nonhomologous recombination, and two or three homologous sequence types of each form, with almost each sequence type present in an LS region of another strain. A large section of one of the forms is known to be horizontally transferred between V. dahliae strains. We unexpectedly found that 350 kilobases of dynamic LS regions were much more conserved than the core genome between V. dahliae and a closely related species (V. albo-atrum, suggesting that these LS regions were horizontally transferred recently. Our results support the view that genetic variation in LS regions is generated by horizontal transfer between strains, and by chromosomal reshuffling reported previously.

Screening for single-chain variable fragment antibodies against multiple Cry1 toxins from an immunized mouse phage display antibody library.

Science.gov (United States)

Dong, Sa; Bo, Zongyi; Zhang, Cunzheng; Feng, Jianguo; Liu, Xianjin

2018-04-01

Single-chain variable fragment (scFv) is a kind of antibody that possess only one chain of the complete antibody while maintaining the antigen-specific binding abilities and can be expressed in prokaryotic system. In this study, scFvs against Cry1 toxins were screened out from an immunized mouse phage displayed antibody library, which was successfully constructed with capacity of 6.25 × 10 7  CFU/mL. Using the mixed and alternative antigen coating strategy and after four rounds of affinity screening, seven positive phage-scFvs against Cry1 toxins were selected and characterized. Among them, clone scFv-3H9 (MG214869) showing relative stable and high binding abilities to six Cry1 toxins was selected for expression and purification. SDS-PAGE indicated that the scFv-3H9 fragments approximately 27 kDa were successfully expressed in Escherichia coli HB2151 strain. The purified scFv-3H9 was used to establish the double antibody sandwich enzyme-linked immunosorbent assay method (DAS-ELISA) for detecting six Cry1 toxins, of which the lowest detectable limits (LOD) and the lowest quantitative limits (LOQ) were 3.14-11.07 and 8.22-39.44 ng mL -1 , respectively, with the correlation coefficient higher than 0.997. The average recoveries of Cry1 toxins from spiked rice leaf samples were ranged from 84 to 95%, with coefficient of variation (CV) less than 8.2%, showing good accuracy for the multi-residue determination of six Cry1 toxins in agricultural samples. This research suggested that the constructed phage display antibody library based on the animal which was immunized with the mixture of several antigens under the same category can be used for the quick and effective screening of generic antibodies.

Variability of macrofauna distribution along a dissipative log-spiral sandy beach in Rio de Janeiro, Southeastern Brazil

Directory of Open Access Journals (Sweden)

Carlos A.M. Barboza

2017-03-01

Full Text Available Log-spiral beaches display defined physical gradients alongshore. However, the majority of studies focus on the variability of a single population of macrofauna species. We aimed to investigate the variation in species distribution and in community structure along ten transects on a log-spiral beach. Principal component analysis indicated a clear physical gradient alongshore. Redundancy analysis showed that the sheltered end was related to smaller particle sizes, higher organic matter content and high densities of polychaetes. The exposed end was characterized by coarser sand, lower organic matter content and a high presence of crustaceans. Model selection indicated that the “best fit” to explain the variability in the number of individuals included grain size and beach slope. Variability of the polychaete Scolelepis squamata was best explained by grain size, slope and sediment sorting. The best model for the cirolanid Excirolana armata only included sediment sorting. The physical gradient in sediment texture and the beach slope explained more than one-third of the variability in community structure. The physical variables were also correlated with the distribution of the individual species. We showed that the physical gradient on log-spiral coasts may be an important driver of macrofauna variability, even at mesoscales and in dissipative conditions.

Environmental effects on the shape variation of male ultraviolet patterns in the Brimstone butterfly ( Gonepteryx rhamni, Pieridae, Lepidoptera)

Science.gov (United States)

Pecháček, Pavel; Stella, David; Keil, Petr; Kleisner, Karel

2014-12-01

The males of the Brimstone butterfly ( Gonepteryx rhamni) have ultraviolet pattern on the dorsal surfaces of their wings. Using geometric morphometrics, we have analysed correlations between environmental variables (climate, productivity) and shape variability of the ultraviolet pattern and the forewing in 110 male specimens of G. rhamni collected in the Palaearctic zone. To start with, we subjected the environmental variables to principal component analysis (PCA). The first PCA axis (precipitation, temperature, latitude) significantly correlated with shape variation of the ultraviolet patterns across the Palaearctic. Additionally, we have performed two-block partial least squares (PLS) analysis to assess co-variation between intraspecific shape variation and the variation of 11 environmental variables. The first PLS axis explained 93 % of variability and represented the effect of precipitation, temperature and latitude. Along this axis, we observed a systematic increase in the relative area of ultraviolet colouration with increasing temperature and precipitation and decreasing latitude. We conclude that the shape variation of ultraviolet patterns on the forewings of male Brimstones is correlated with large-scale environmental factors.

Antigenic variation of TprK facilitates development of secondary syphilis.

Science.gov (United States)

Reid, Tara B; Molini, Barbara J; Fernandez, Mark C; Lukehart, Sheila A

2014-12-01

Although primary syphilis lesions heal spontaneously, the infection is chronic, with subsequent clinical stages. Healing of the primary chancre occurs as antibodies against outer membrane antigens facilitate opsonophagocytosis of the bacteria by activated macrophages. TprK is an outer membrane protein that undergoes antigenic variation at 7 variable regions, and variants are selected by immune pressure. We hypothesized that individual TprK variants escape immune clearance and seed new disseminated lesions to cause secondary syphilis. As in human syphilis, infected rabbits may develop disseminated secondary skin lesions. This study explores the nature of secondary syphilis, specifically, the contribution of antigenic variation to the development of secondary lesions. Our data from the rabbit model show that the odds of secondary lesions containing predominately TprK variant treponemes is 3.3 times higher than the odds of finding TprK variants in disseminated primary lesions (odds ratio [OR] = 3.3 [95% confidence interval {CI}, 0.98 to 11.0]; P = 0.055) and that 96% of TprK variant secondary lesions are likely seeded by single treponemes. Analysis of antibody responses demonstrates significantly higher antibody titers to tprK variable region sequences found in the inoculum compared to reactivity to tprK variant sequences found in newly arising secondary lesions. This suggests that tprK variants escape the initial immune response raised against the V regions expressed in the inoculum. These data further support a role for TprK in immune evasion and suggest that the ability of TprK variants to persist despite a robust immune response is instrumental in the development of later stages of syphilis. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Geomagnetic Core Field Secular Variation Models

DEFF Research Database (Denmark)

Gillet, N.; Lesur, V.; Olsen, Nils

2010-01-01

highlight the difficulty of resolving the time variability of the high degree secular variation coefficients (i.e. the secular acceleration), arising for instance from the challenge to properly separate sources of internal and of external origin. In addition, the regularisation process may also result...

Sequential Total Variation Denoising for the Extraction of Fetal ECG from Single-Channel Maternal Abdominal ECG.

Science.gov (United States)

Lee, Kwang Jin; Lee, Boreom

2016-07-01

Fetal heart rate (FHR) is an important determinant of fetal health. Cardiotocography (CTG) is widely used for measuring the FHR in the clinical field. However, fetal movement and blood flow through the maternal blood vessels can critically influence Doppler ultrasound signals. Moreover, CTG is not suitable for long-term monitoring. Therefore, researchers have been developing algorithms to estimate the FHR using electrocardiograms (ECGs) from the abdomen of pregnant women. However, separating the weak fetal ECG signal from the abdominal ECG signal is a challenging problem. In this paper, we propose a method for estimating the FHR using sequential total variation denoising and compare its performance with that of other single-channel fetal ECG extraction methods via simulation using the Fetal ECG Synthetic Database (FECGSYNDB). Moreover, we used real data from PhysioNet fetal ECG databases for the evaluation of the algorithm performance. The R-peak detection rate is calculated to evaluate the performance of our algorithm. Our approach could not only separate the fetal ECG signals from the abdominal ECG signals but also accurately estimate the FHR.

Determinants of single family residential water use across scales in four western US cities.

Science.gov (United States)

Chang, Heejun; Bonnette, Matthew Ryan; Stoker, Philip; Crow-Miller, Britt; Wentz, Elizabeth

2017-10-15

A growing body of literature examines urban water sustainability with increasing evidence that locally-based physical and social spatial interactions contribute to water use. These studies however are based on single-city analysis and often fail to consider whether these interactions occur more generally. We examine a multi-city comparison using a common set of spatially-explicit water, socioeconomic, and biophysical data. We investigate the relative importance of variables for explaining the variations of single family residential (SFR) water uses at Census Block Group (CBG) and Census Tract (CT) scales in four representative western US cities - Austin, Phoenix, Portland, and Salt Lake City, - which cover a wide range of climate and development density. We used both ordinary least squares regression and spatial error regression models to identify the influence of spatial dependence on water use patterns. Our results show that older downtown areas show lower water use than newer suburban areas in all four cities. Tax assessed value and building age are the main determinants of SFR water use across the four cities regardless of the scale. Impervious surface area becomes an important variable for summer water use in all cities, and it is important in all seasons for arid environments such as Phoenix. CT level analysis shows better model predictability than CBG analysis. In all cities, seasons, and spatial scales, spatial error regression models better explain the variations of SFR water use. Such a spatially-varying relationship of urban water consumption provides additional evidence for the need to integrate urban land use planning and municipal water planning. Copyright © 2017 Elsevier B.V. All rights reserved.

Y-Chromosome variation in hominids: intraspecific variation is limited to the polygamous chimpanzee.

Directory of Open Access Journals (Sweden)

Gabriele Greve

Full Text Available BACKGROUND: We have previously demonstrated that the Y-specific ampliconic fertility genes DAZ (deleted in azoospermia and CDY (chromodomain protein Y varied with respect to copy number and position among chimpanzees (Pan troglodytes. In comparison, seven Y-chromosomal lineages of the bonobo (Pan paniscus, the chimpanzee's closest living relative, showed no variation. We extend our earlier comparative investigation to include an analysis of the intraspecific variation of these genes in gorillas (Gorilla gorilla and orangutans (Pongo pygmaeus, and examine the resulting patterns in the light of the species' markedly different social and mating behaviors. METHODOLOGY/PRINCIPAL FINDINGS: Fluorescence in situ hybridization analysis (FISH of DAZ and CDY in 12 Y-chromosomal lineages of western lowland gorilla (G. gorilla gorilla and a single lineage of the eastern lowland gorilla (G. beringei graueri showed no variation among lineages. Similar findings were noted for the 10 Y-chromosomal lineages examined in the Bornean orangutan (Pongo pygmaeus, and 11 Y-chromosomal lineages of the Sumatran orangutan (P. abelii. We validated the contrasting DAZ and CDY patterns using quantitative real-time polymerase chain reaction (qPCR in chimpanzee and bonobo. CONCLUSION/SIGNIFICANCE: High intraspecific variation in copy number and position of the DAZ and CDY genes is seen only in the chimpanzee. We hypothesize that this is best explained by sperm competition that results in the variant DAZ and CDY haplotypes detected in this species. In contrast, bonobos, gorillas and orangutans-species that are not subject to sperm competition-showed no intraspecific variation in DAZ and CDY suggesting that monoandry in gorillas, and preferential female mate choice in bonobos and orangutans, probably permitted the fixation of a single Y variant in each taxon. These data support the notion that the evolutionary history of a primate Y chromosome is not simply encrypted in its DNA

Predictive modeling and reducing cyclic variability in autoignition engines

Science.gov (United States)

Hellstrom, Erik; Stefanopoulou, Anna; Jiang, Li; Larimore, Jacob

2016-08-30

Methods and systems are provided for controlling a vehicle engine to reduce cycle-to-cycle combustion variation. A predictive model is applied to predict cycle-to-cycle combustion behavior of an engine based on observed engine performance variables. Conditions are identified, based on the predicted cycle-to-cycle combustion behavior, that indicate high cycle-to-cycle combustion variation. Corrective measures are then applied to prevent the predicted high cycle-to-cycle combustion variation.

The WFCAM multiwavelength Variable Star Catalog

Science.gov (United States)

Ferreira Lopes, C. E.; Dékány, I.; Catelan, M.; Cross, N. J. G.; Angeloni, R.; Leão, I. C.; De Medeiros, J. R.

2015-01-01

Context. Stellar variability in the near-infrared (NIR) remains largely unexplored. The exploitation of public science archives with data-mining methods offers a perspective for a time-domain exploration of the NIR sky. Aims: We perform a comprehensive search for stellar variability using the optical-NIR multiband photometric data in the public Calibration Database of the WFCAM Science Archive (WSA), with the aim of contributing to the general census of variable stars and of extending the current scarce inventory of accurate NIR light curves for a number of variable star classes. Methods: Standard data-mining methods were applied to extract and fine-tune time-series data from the WSA. We introduced new variability indices designed for multiband data with correlated sampling, and applied them for preselecting variable star candidates, i.e., light curves that are dominated by correlated variations, from noise-dominated ones. Preselection criteria were established by robust numerical tests for evaluating the response of variability indices to the colored noise characteristic of the data. We performed a period search using the string-length minimization method on an initial catalog of 6551 variable star candidates preselected by variability indices. Further frequency analysis was performed on positive candidates using three additional methods in combination, in order to cope with aliasing. Results: We find 275 periodic variable stars and an additional 44 objects with suspected variability with uncertain periods or apparently aperiodic variation. Only 44 of these objects had been previously known, including 11 RR Lyrae stars on the outskirts of the globular cluster M 3 (NGC 5272). We provide a preliminary classification of the new variable stars that have well-measured light curves, but the variability types of a large number of objects remain ambiguous. We classify most of the new variables as contact binary stars, but we also find several pulsating stars, among which

Análisis de las variables de marketing que afectan al valor del cliente. La permanencia como variable controlable

OpenAIRE

Pedreño Santos, Ana

2015-01-01

To know how marketing variables affect customer value is essential for a company in order to be market and customer oriented, and to improve investment efficiency in both attracting and retaining customers. Thus, the assessment of the influence of marketing variables in customer value is of prime importance. This is recognized in many empirical studies of these variables, which address the impact of a single variable (or sets of a few variables) on customer value. A comprehensive, integrated ...

Vector optimization set-valued and variational analysis

CERN Document Server

Chen, Guang-ya; Yang, Xiaogi

2005-01-01

This book is devoted to vector or multiple criteria approaches in optimization. Topics covered include: vector optimization, vector variational inequalities, vector variational principles, vector minmax inequalities and vector equilibrium problems. In particular, problems with variable ordering relations and set-valued mappings are treated. The nonlinear scalarization method is extensively used throughout the book to deal with various vector-related problems. The results presented are original and should be interesting to researchers and graduates in applied mathematics and operations research

A probabilistic Hu-Washizu variational principle

Science.gov (United States)

Liu, W. K.; Belytschko, T.; Besterfield, G. H.

1987-01-01

A Probabilistic Hu-Washizu Variational Principle (PHWVP) for the Probabilistic Finite Element Method (PFEM) is presented. This formulation is developed for both linear and nonlinear elasticity. The PHWVP allows incorporation of the probabilistic distributions for the constitutive law, compatibility condition, equilibrium, domain and boundary conditions into the PFEM. Thus, a complete probabilistic analysis can be performed where all aspects of the problem are treated as random variables and/or fields. The Hu-Washizu variational formulation is available in many conventional finite element codes thereby enabling the straightforward inclusion of the probabilistic features into present codes.

Natural variability in the surface ocean carbonate ion concentration

Science.gov (United States)

Lovenduski, N. S.; Long, M. C.; Lindsay, K.

2015-11-01

We investigate variability in the surface ocean carbonate ion concentration ([CO32-]) on the basis of a~long control simulation with an Earth System Model. The simulation is run with a prescribed, pre-industrial atmospheric CO2 concentration for 1000 years, permitting investigation of natural [CO32-] variability on interannual to multi-decadal timescales. We find high interannual variability in surface [CO32-] in the tropical Pacific and at the boundaries between the subtropical and subpolar gyres in the Northern Hemisphere, and relatively low interannual variability in the centers of the subtropical gyres and in the Southern Ocean. Statistical analysis of modeled [CO32-] variance and autocorrelation suggests that significant anthropogenic trends in the saturation state of aragonite (Ωaragonite) are already or nearly detectable at the sustained, open-ocean time series sites, whereas several decades of observations are required to detect anthropogenic trends in Ωaragonite in the tropical Pacific, North Pacific, and North Atlantic. The detection timescale for anthropogenic trends in pH is shorter than that for Ωaragonite, due to smaller noise-to-signal ratios and lower autocorrelation in pH. In the tropical Pacific, the leading mode of surface [CO32-] variability is primarily driven by variations in the vertical advection of dissolved inorganic carbon (DIC) in association with El Niño-Southern Oscillation. In the North Pacific, surface [CO32-] variability is caused by circulation-driven variations in surface DIC and strongly correlated with the Pacific Decadal Oscillation, with peak spectral power at 20-30-year periods. North Atlantic [CO32-] variability is also driven by variations in surface DIC, and exhibits weak correlations with both the North Atlantic Oscillation and the Atlantic Multidecadal Oscillation. As the scientific community seeks to detect the anthropogenic influence on ocean carbonate chemistry, these results will aid the interpretation of trends

The influence of climate variables on dengue in Singapore.

Science.gov (United States)

Pinto, Edna; Coelho, Micheline; Oliver, Leuda; Massad, Eduardo

2011-12-01

In this work we correlated dengue cases with climatic variables for the city of Singapore. This was done through a Poisson Regression Model (PRM) that considers dengue cases as the dependent variable and the climatic variables (rainfall, maximum and minimum temperature and relative humidity) as independent variables. We also used Principal Components Analysis (PCA) to choose the variables that influence in the increase of the number of dengue cases in Singapore, where PC₁ (Principal component 1) is represented by temperature and rainfall and PC₂ (Principal component 2) is represented by relative humidity. We calculated the probability of occurrence of new cases of dengue and the relative risk of occurrence of dengue cases influenced by climatic variable. The months from July to September showed the highest probabilities of the occurrence of new cases of the disease throughout the year. This was based on an analysis of time series of maximum and minimum temperature. An interesting result was that for every 2-10°C of variation of the maximum temperature, there was an average increase of 22.2-184.6% in the number of dengue cases. For the minimum temperature, we observed that for the same variation, there was an average increase of 26.1-230.3% in the number of the dengue cases from April to August. The precipitation and the relative humidity, after analysis of correlation, were discarded in the use of Poisson Regression Model because they did not present good correlation with the dengue cases. Additionally, the relative risk of the occurrence of the cases of the disease under the influence of the variation of temperature was from 1.2-2.8 for maximum temperature and increased from 1.3-3.3 for minimum temperature. Therefore, the variable temperature (maximum and minimum) was the best predictor for the increased number of dengue cases in Singapore.

Single-crystal Brillouin spectroscopy with CO{sub 2} laser heating and variable q

Energy Technology Data Exchange (ETDEWEB)

Zhang, Jin S.; Bass, Jay D. [Department of Geology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801 (United States); Zhu, Gaohua [Materials Research Department, Toyota Research Institute of North America, Ann Arbor, Michigan 48105 (United States)

2015-06-15

We describe a Brillouin spectroscopy system integrated with CO{sub 2} laser-heating and Raman spectroscopic capabilities. Temperature is determined by measurements of the grey-body thermal radiation emitted by the hot sample, with the system response calibrated relative to a standard tungsten ribbon lamp. High-pressure laser-heating Brillouin scattering measurements of acoustic velocities on liquid water and ice compressed in a diamond-anvil cell were performed at temperatures up to 2500 ± 150 K at high pressure. Single-crystal laser-heating Brillouin measurements were made on the (111) plane of San Carlos olivine at ∼13 GPa, 1300 ± 200 K. The pressure as measured by ruby fluorescence is shown to be within ±0.5 GPa of the pressure on the olivine sample during laser heating when KCl and KBr are used as pressure-transmitting media. In addition, the system is designed for continuously variable scattering angles from forward scattering (near 0° scattering angle) up to near back scattering (∼141°). This novel setup allows us to probe a wide range of wave vectors q for investigation of phonon dispersion on, for example, crystals with large unit cells (on the scale of hundreds of nm)

Design and Calibration of a Transformer Controlled Variable ...

African Journals Online (AJOL)

A new approach for the design and construction of a variable rainfall simulator using an auto transformer which is aimed at soil erosion research was explored. The method involves using a water pump, a variable voltage regulator and a set of nozzles for the simulation of rainfall. It was found that the variation of rainfall ...

Variability in millimeter wave scattering properties of dendritic ice crystals

International Nuclear Information System (INIS)

Botta, Giovanni; Aydin, Kültegin; Verlinde, Johannes

2013-01-01

A detailed electromagnetic scattering model for ice crystals is necessary for calculating radar reflectivity from cloud resolving model output in any radar simulator. The radar reflectivity depends on the backscattering cross sections and size distributions of particles in the radar resolution volume. The backscattering cross section depends on the size, mass and distribution of mass within the crystal. Most of the available electromagnetic scattering data for ice hydrometeors rely on simple ice crystal types and a single mass–dimensional relationship for a given type. However, a literature survey reveals that the mass–dimensional relationships for dendrites cover a relatively broad region in the mass–dimensional plane. This variability of mass and mass distribution of dendritic ice crystals cause significant variability in their backscattering cross sections, more than 10 dB for all sizes (0.5–5 mm maximum dimension) and exceeding 20 dB for the larger ones at X-, Ka-, and W-band frequencies. Realistic particle size distributions are used to calculate radar reflectivity and ice water content (IWC) for three mass–dimensional relationships. The uncertainty in the IWC for a given reflectivity spans an order of magnitude in value at all three frequencies because of variations in the unknown mass–dimensional relationship and particle size distribution. The sensitivity to the particle size distribution is reduced through the use of dual frequency reflectivity ratios, e.g., Ka- and W-band frequencies, together with the reflectivity at one of the frequencies for estimating IWC. -- Highlights: • Millimeter wave backscattering characteristics of dendritic crystals are modeled. • Natural variability of dendrite shapes leads to large variability in their mass. • Dendrite mass variability causes large backscattering cross section variability. • Reflectivity–ice water content relation is sensitive to mass and size distribution. • Dual frequency

Multi-Frequency Blazar Micro-Variability as a Tool to Investigate Relativistic Jets

Directory of Open Access Journals (Sweden)

James R. Webb

2016-08-01

Full Text Available For the past 12 years we have been studying optical micro-variability of a sample of 15 Blazars. We summarize the results of this study and draw some basic conclusions about the characteristics of micro-variability. The intermittency, the stochastic nature, and the similar profile shapes seen in micro-variations at different times and in different objects have led us to a possible model to explain the observed micro-variations. The model is based on a strong shock propagating down a relativistic jet and encountering turbulence which causes density or magnetic field enhancements. We use the theory of Kirk, Reiger, and Mastichiadis (1998 to describe the pulse of synchrotron emission emanating from individual density enhancements energized by the shock. By fitting these “pulses” to micro-variability observations, we obtain excellent fits to actual micro-variations. The model predicts that the spectral index changes as a function of pulse duration. This effect should be observable in multi-frequency micro-variability data. We present the theoretical model, model fits of our micro-variability light curves, and preliminary multi-frequency micro-variability observations that support this model. A further test that has yet to be carried out involves observing polarization changes in different pulses.

Vascular Variations Associated with Intracranial Aneurysms.

Science.gov (United States)

Orakdogen, Metin; Emon, Selin Tural; Somay, Hakan; Engin, Taner; Is, Merih; Hakan, Tayfun

2017-01-01

To investigate the vascular variations in patients with intracranial aneurysm in circle of Willis. We used the data on 128 consecutive intracranial aneurysm cases. Cerebral angiography images were analyzed retrospectively. Arteries were grouped as anterior cerebral arterial system (ACS), posterior cerebral arterial system (PCS) and middle cerebral arterial system (MCS) for grouping vascular variations. Lateralization, being single/multiple, gender; and also any connection with accompanying aneurysms" number, localization, dimension, whether bleeding/incidental aneurysm has been inspected. Variations were demonstrated in 57.8% of the cases. The most common variation was A1 variation (34.4%). The rate of variations was 36.7%, 24.2% and 10.2% respectively in ACS, PCS and MCS. MCS variations were significantly higher in males. Anterior communicating artery (ACoA) aneurysm observance rates were significantly higher and posterior communicating artery (PCoA) aneurysm and middle cerebral artery (MCA) aneurysm observance rates were significantly lower when compared to "no ACS variation detected" cases. In "PCS variation detected" cases, PCoA aneurysm observance rates and coexistence of multiple variations were significantly higher. The rate of vascular variations in patients with aneurysms was 57.8%. Arterial hypoplasia and aplasia were the most common variations. ACS was the most common region that variations were located in; they were mostly detected on the right side. Coexistence of ACoA aneurysm was higher than PCoA and MCA aneurysms. In the PCS variations group, PCoA aneurysms were the most common aneurysms that accompanying the variation and multiple variations were more common than in the other two groups. The variations in MCS were most common in males.

Why do lifespan variability trends for the young and old diverge? A perturbation analysis

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Michal Engelman

2014-05-01

Full Text Available Background: Variation in lifespan has followed strikingly different trends for the young and old: while overall lifespan variability has decreased as life expectancy at birth has risen, the variability conditional on survival to older ages has increased. These diverging trends reflect changes in the underlying demographic parameters determining age-specific mortality. Objective: We ask why the variation in the adult ages at death has followed a different trend than the variation at younger ages, and aim to explain the diverging patterns in terms of historical changes in the age schedule of mortality. Methods: Using simulations, we show that the empirical trends in lifespan variation are well characterized using the Siler model, which describes the mortality hazard across the full lifespan using functions representing early-life, later-life, and background mortality. We then obtain maximum likelihood estimates of the Siler parameters over time. Finally, we express lifespan variation in terms of a Markov chain model, and apply matrix calculus perturbation analysis to compute the sensitivity of age-specific lifespan variance trends to the changing Siler model parameters. Results: Our analysis produces a detailed quantification of the impact of changing demographic parameters on the pattern of lifespan variability at all ages, highlighting the impact of declining childhood mortality on the reduction of lifespan variability and the impact of improved survival in adulthood on the rising variability of lifespans at older ages. Conclusions: These findings provide insight into the dynamic relationship between the age pattern of survival improvements and time trends in lifespan variability.

Variability in abundance of temperate reef fishes estimated by visual census.

Directory of Open Access Journals (Sweden)

Alejo J Irigoyen

Full Text Available Identifying sources of sampling variation and quantifying their magnitude is critical to the interpretation of ecological field data. Yet, most monitoring programs of reef fish populations based on underwater visual censuses (UVC consider only a few of the factors that may influence fish counts, such as the diver or census methodology. Recent studies, however, have drawn attention to a broader range of processes that introduce variability at different temporal scales. This study analyzes the magnitude of different sources of variation in UVCs of temperate reef fishes off Patagonia (Argentina. The variability associated with time-of-day, tidal state, and time elapsed between censuses (minutes, days, weeks and months was quantified for censuses conducted on the five most conspicuous and common species: Pinguipes brasilianus, Pseudopercis semifasciata, Sebastes oculatus, Acanthistius patachonicus and Nemadactylus bergi. Variance components corresponding to spatial heterogeneity and to the different temporal scales were estimated using nested random models. The levels of variability estimated for the different species were related to their life history attributes and behavior. Neither time-of-day nor tidal state had a significant effect on counts, except for the influence of tide on P. brasilianus. Spatial heterogeneity was the dominant source of variance in all but one species. Among the temporal scales, the intra-annual variation was the highest component for most species due to marked seasonal fluctuations in abundance, followed by the weekly and the instantaneous variation; the daily component was not significant. The variability between censuses conducted at different tidal levels and time-of-day was similar in magnitude to the instantaneous variation, reinforcing the conclusion that stochastic variation at very short time scales is non-negligible and should be taken into account in the design of monitoring programs and experiments. The present

Progressive erosion of genetic and epigenetic variation in callus-derived cocoa (Theobroma cacao) plants.

Science.gov (United States)

Rodríguez López, Carlos M; Wetten, Andrew C; Wilkinson, Michael J

2010-06-01

*Relatively little is known about the timing of genetic and epigenetic forms of somaclonal variation arising from callus growth. We surveyed for both types of change in cocoa (Theobroma cacao) plants regenerated from calli of various ages, and also between tissues from the source trees. *For genetic change, we used 15 single sequence repeat (SSR) markers from four source trees and from 233 regenerated plants. For epigenetic change, we used 386 methylation-sensitive amplified polymorphism (MSAP) markers on leaf and explant (staminode) DNA from two source trees and on leaf DNA from 114 regenerants. *Genetic variation within source trees was limited to one slippage mutation in one leaf. Regenerants were far more variable, with 35% exhibiting at least one mutation. Genetic variation initially accumulated with culture age but subsequently declined. MSAP (epigenetic) profiles diverged between leaf and staminode samples from source trees. Multivariate analysis revealed that leaves from regenerants occupied intermediate eigenspace between leaves and staminodes of source plants but became progressively more similar to source tree leaves with culture age. *Statistical analysis confirmed this rather counterintuitive finding that leaves of 'late regenerants' exhibited significantly less genetic and epigenetic divergence from source leaves than those exposed to short periods of callus growth.

Economic Statistical Design of Variable Sampling Interval X¯$\\overline X $ Control Chart Based on Surrogate Variable Using Genetic Algorithms

Directory of Open Access Journals (Sweden)

Lee Tae-Hoon

2016-12-01

Full Text Available In many cases, a X¯$\\overline X $ control chart based on a performance variable is used in industrial fields. Typically, the control chart monitors the measurements of a performance variable itself. However, if the performance variable is too costly or impossible to measure, and a less expensive surrogate variable is available, the process may be more efficiently controlled using surrogate variables. In this paper, we present a model for the economic statistical design of a VSI (Variable Sampling Interval X¯$\\overline X $ control chart using a surrogate variable that is linearly correlated with the performance variable. We derive the total average profit model from an economic viewpoint and apply the model to a Very High Temperature Reactor (VHTR nuclear fuel measurement system and derive the optimal result using genetic algorithms. Compared with the control chart based on a performance variable, the proposed model gives a larger expected net income per unit of time in the long-run if the correlation between the performance variable and the surrogate variable is relatively high. The proposed model was confined to the sample mean control chart under the assumption that a single assignable cause occurs according to the Poisson process. However, the model may also be extended to other types of control charts using a single or multiple assignable cause assumptions such as VSS (Variable Sample Size X¯$\\overline X $ control chart, EWMA, CUSUM charts and so on.

Risk adjustment models for interhospital comparison of CS rates using Robson's ten group classification system and other socio-demographic and clinical variables.

Science.gov (United States)

Colais, Paola; Fantini, Maria P; Fusco, Danilo; Carretta, Elisa; Stivanello, Elisa; Lenzi, Jacopo; Pieri, Giulia; Perucci, Carlo A

2012-06-21

Caesarean section (CS) rate is a quality of health care indicator frequently used at national and international level. The aim of this study was to assess whether adjustment for Robson's Ten Group Classification System (TGCS), and clinical and socio-demographic variables of the mother and the fetus is necessary for inter-hospital comparisons of CS rates. The study population includes 64,423 deliveries in Emilia-Romagna between January 1, 2003 and December 31, 2004, classified according to theTGCS. Poisson regression was used to estimate crude and adjusted hospital relative risks of CS compared to a reference category. Analyses were carried out in the overall population and separately according to the Robson groups (groups I, II, III, IV and V-X combined). Adjusted relative risks (RR) of CS were estimated using two risk-adjustment models; the first (M1) including the TGCS group as the only adjustment factor; the second (M2) including in addition demographic and clinical confounders identified using a stepwise selection procedure. Percentage variations between crude and adjusted RRs by hospital were calculated to evaluate the confounding effect of covariates. The percentage variations from crude to adjusted RR proved to be similar in M1 and M2 model. However, stratified analyses by Robson's classification groups showed that residual confounding for clinical and demographic variables was present in groups I (nulliparous, single, cephalic, ≥37 weeks, spontaneous labour) and III (multiparous, excluding previous CS, single, cephalic, ≥37 weeks, spontaneous labour) and IV (multiparous, excluding previous CS, single, cephalic, ≥37 weeks, induced or CS before labour) and to a minor extent in groups II (nulliparous, single, cephalic, ≥37 weeks, induced or CS before labour) and IV (multiparous, excluding previous CS, single, cephalic, ≥37 weeks, induced or CS before labour). The TGCS classification is useful for inter-hospital comparison of CS section rates, but

Is WD 1437-008 a cataclysmic variable?

Science.gov (United States)

Shimansky, V. V.; Nurtdinova, D. N.; Borisov, N. V.; Spiridonova, O. I.

2011-10-01

Comprehensive observations of a close binary candidate WD 1437-008 are performed. The shape and amplitude of the observed brightness variations are shown to be inconsistent with the hypothesis of reflection effects, and the photometric period of the system, P phot = 0. d 2775, is found to differ from the period of spectral variations, P sp = 0. d 272060. As a result, WD 1437-008 has been preliminarily classified as a low-inclination cataclysmic variable.

Dentition of moustached tamarins (Saguinus mystax mystax) from Padre Isla, Peru, part 1: quantitative variation.

Science.gov (United States)

Tornow, Matthew A; Ford, Susan M; Garber, Paul A; de Sa Sauerbrunn, Edward

2006-07-01

Analyses of dental variation in geographically restricted, wild populations of primates are extremely rare; however, such data form the best source for models of likely degrees of variation within and between fossil species. Data from dental casts of a geographically restricted population of moustached tamarins (Saguinus mystax mystax) from Padre Isla, Peru, document high levels of dental variability, as measured by coefficients of variation, in a nonsexually dimorphic species, despite its isolation and small population size. Like other primates, moustached tamarins show lower variability in the dimensions of the first molars and increased variability in the dimensions of the final molars in the toothrow. Moustached tamarins from Padre Isla have a distinctive pattern of variability in the remaining teeth, including more stable tooth lengths in the anterior and posterior portions of the toothrow, and more stable tooth widths in the midregion of the toothrow. High variability in incisor width may be due to age effects of a distinctive diet and pattern of dental wear.

Error estimation for variational nodal calculations

International Nuclear Information System (INIS)

Zhang, H.; Lewis, E.E.

1998-01-01

Adaptive grid methods are widely employed in finite element solutions to both solid and fluid mechanics problems. Either the size of the element is reduced (h refinement) or the order of the trial function is increased (p refinement) locally to improve the accuracy of the solution without a commensurate increase in computational effort. Success of these methods requires effective local error estimates to determine those parts of the problem domain where the solution should be refined. Adaptive methods have recently been applied to the spatial variables of the discrete ordinates equations. As a first step in the development of adaptive methods that are compatible with the variational nodal method, the authors examine error estimates for use in conjunction with spatial variables. The variational nodal method lends itself well to p refinement because the space-angle trial functions are hierarchical. Here they examine an error estimator for use with spatial p refinement for the diffusion approximation. Eventually, angular refinement will also be considered using spherical harmonics approximations

Note: Dynamic Conjectural Variations in a Lanchester Oligopoly

OpenAIRE

Gary M. Erickson

1997-01-01

An approach based on dynamic conjectural variations is advanced for developing dynamic advertising strategies in a Lanchester oligopoly differential game. The approach allows competitors to anticipate rival reactions to market-share state variables, and maintains the computational advantage of open-loop Nash equilibrium strategies. In an empirical application to the ready-to-eat cereal industry, it is shown that advertising strategies based on dynamic conjectural variations can better explain...

Econometrics in outcomes research: the use of instrumental variables.

Science.gov (United States)

Newhouse, J P; McClellan, M

1998-01-01

We describe an econometric technique, instrumental variables, that can be useful in estimating the effectiveness of clinical treatments in situations when a controlled trial has not or cannot be done. This technique relies upon the existence of one or more variables that induce substantial variation in the treatment variable but have no direct effect on the outcome variable of interest. We illustrate the use of the technique with an application to aggressive treatment of acute myocardial infarction in the elderly.

THE HUBBLE WIDE FIELD CAMERA 3 TEST OF SURFACES IN THE OUTER SOLAR SYSTEM: SPECTRAL VARIATION ON KUIPER BELT OBJECTS

International Nuclear Information System (INIS)

Fraser, Wesley C.; Brown, Michael E.; Glass, Florian

2015-01-01

Here, we present additional photometry of targets observed as part of the Hubble Wide Field Camera 3 (WFC3) Test of Surfaces in the Outer Solar System. Twelve targets were re-observed with the WFC3 in the optical and NIR wavebands designed to complement those used during the first visit. Additionally, all of the observations originally presented by Fraser and Brown were reanalyzed through the same updated photometry pipeline. A re-analysis of the optical and NIR color distribution reveals a bifurcated optical color distribution and only two identifiable spectral classes, each of which occupies a broad range of colors and has correlated optical and NIR colors, in agreement with our previous findings. We report the detection of significant spectral variations on five targets which cannot be attributed to photometry errors, cosmic rays, point-spread function or sensitivity variations, or other image artifacts capable of explaining the magnitude of the variation. The spectrally variable objects are found to have a broad range of dynamical classes and absolute magnitudes, exhibit a broad range of apparent magnitude variations, and are found in both compositional classes. The spectrally variable objects with sufficiently accurate colors for spectral classification maintain their membership, belonging to the same class at both epochs. 2005 TV189 exhibits a sufficiently broad difference in color at the two epochs that span the full range of colors of the neutral class. This strongly argues that the neutral class is one single class with a broad range of colors, rather than the combination of multiple overlapping classes

The Chandra Source Catalog: Source Variability

Science.gov (United States)

Nowak, Michael; Rots, A. H.; McCollough, M. L.; Primini, F. A.; Glotfelty, K. J.; Bonaventura, N. R.; Chen, J. C.; Davis, J. E.; Doe, S. M.; Evans, J. D.; Evans, I.; Fabbiano, G.; Galle, E. C.; Gibbs, D. G., II; Grier, J. D.; Hain, R.; Hall, D. M.; Harbo, P. N.; He, X.; Houck, J. C.; Karovska, M.; Lauer, J.; McDowell, J. C.; Miller, J. B.; Mitschang, A. W.; Morgan, D. L.; Nichols, J. S.; Plummer, D. A.; Refsdal, B. L.; Siemiginowska, A. L.; Sundheim, B. A.; Tibbetts, M. S.; van Stone, D. W.; Winkelman, S. L.; Zografou, P.

2009-09-01

The Chandra Source Catalog (CSC) contains fields of view that have been studied with individual, uninterrupted observations that span integration times ranging from 1 ksec to 160 ksec, and a large number of which have received (multiple) repeat observations days to years later. The CSC thus offers an unprecedented look at the variability of the X-ray sky over a broad range of time scales, and across a wide diversity of variable X-ray sources: stars in the local galactic neighborhood, galactic and extragalactic X-ray binaries, Active Galactic Nuclei, etc. Here we describe the methods used to identify and quantify source variability within a single observation, and the methods used to assess the variability of a source when detected in multiple, individual observations. Three tests are used to detect source variability within a single observation: the Kolmogorov-Smirnov test and its variant, the Kuiper test, and a Bayesian approach originally suggested by Gregory and Loredo. The latter test not only provides an indicator of variability, but is also used to create a best estimate of the variable lightcurve shape. We assess the performance of these tests via simulation of statistically stationary, variable processes with arbitrary input power spectral densities (here we concentrate on results of red noise simulations) at variety of mean count rates and fractional root mean square variabilities relevant to CSC sources. We also assess the false positive rate via simulations of constant sources whose sole source of fluctuation is Poisson noise. We compare these simulations to an assessment of the variability found in real CSC sources, and estimate the variability sensitivities of the CSC.

Model-based servo hydraulic control of a continuously variable transmission

NARCIS (Netherlands)

Cools, S.J.M.; Veenhuizen, P.A.; Pauwelussen, J.P.

2004-01-01

In order to reduce the power consumption of a transmission, maximum tracking accuracy should be achieved of both ratio and pressures in the variator. A control strategy is proposed to steer a variator, actuated with a newly developed hydraulic system, of a Continuously Variable Transmission (CVT).

Robust Two Degrees-of-freedom Single-current Control Strategy for LCL-type Grid-Connected DG System under Grid-Frequency Fluctuation and Grid-impedance Variation

DEFF Research Database (Denmark)

Zhou, Leming; Chen, Yandong; Luo, An

2016-01-01

-of-freedom single-current control (RTDOF-SCC) strategy is proposed, which mainly includes the synchronous reference frame quasi-proportional-integral (SRFQPI) control and robust grid-current-feedback active damping (RGCFAD) control. The proposed SRFQPI control can compensate the local-loads reactive power......, and regulate the instantaneous grid current without steady-state error regardless of the fundamental frequency fluctuation. Simultaneously, the proposed RGCFAD control effectively damps the LCL-resonance peak regardless of the grid-impedance variation, and further improves both transient and steady...

Broad geographic, taxonomic and ecological patterns of interpopulation variation in the dietary habits of snakes

Directory of Open Access Journals (Sweden)

L. Luiselli

2006-06-01

criterion, there was no single factor that produced a significant effect on the interpopulation diet variation but, with regard to the interaction terms between factors, significant effects were determined by 1 continent × climatic region (with Asian, African and South-American tropical populations having significantly lesser similarity values, 2 continent × hunting strategy (diets being less diverse in ambush predators in Africa, Asia and South America, and 3 climatic region × guild (with arboreal tropical snakes showing less interpopulation similarity. As for the close affinity criterion, there was also no effect of single factors on interpopulation diet variability, but the interaction term hunting strategy × venom was significant, with sit-and-wait venomous species being less variable in their diet composition. Snake family was completely un-influent in determining any effect on snake interpopulation diet variation. The broad reasons that may explain these generalized patterns are discussed.

The effects of solar variability on climate

International Nuclear Information System (INIS)

Hoffert, M.I.

1990-01-01

It has been hypothesized for at least a century that some of the observed variance in global temperature records arises from variations in solar output. Theories of solar-variability effects on climate could not be tested directly prior to satellite measurements because uncertainties in ground-based measurements of solar irradiance were larger than the solar variations themselves. Measurements by the Active Cavity Radiometer (ACRIM) onboard the Solar Max satellite and by the Earth Radiation Budget (ERB) instrument onboard Nimbus 6 are now available which indicate solar-constant variations are positively correlated with solar activity over an 11-yr solar cycle, and are of order ± 1.0 W m -2 relative to a mean solar constant of S 0 = 1,367 W m -2 , ΔS/S 0 ∼ ± 0.07%. For a typical climate sensitivity parameter of β = S 0 ∂T/∂S ∼ 100 C, the corresponding variations in radiative equilibrium temperature at the Earth's surface are ΔT e ∼ ± 0.07 C. The realized temperature variations from solar forcing, ΔT, can be significantly smaller because of thermal damping by the ocean. The author considers effects of solar variability on the observed and projected history of the global temperature record in light of this data using an upwelling-diffusion ocean model to assess the effect of ocean thermal inertia on the thermal response. The response to harmonic variations of the 11-yr sunspot cycle is of order ΔT ∼ ± 0.02 C, though the coupling between response and forcing is stronger for long-term variations in the envelope of the solar cycle which more nearly match the thermal response time of the deep ocean

Contribution of FKBP5 genetic variation to gemcitabine treatment and survival in pancreatic adenocarcinoma.

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Katarzyna A Ellsworth

Full Text Available FKBP51, (FKBP5, is a negative regulator of Akt. Variability in FKBP5 expression level is a major factor contributing to variation in response to chemotherapeutic agents including gemcitabine, a first line treatment for pancreatic cancer. Genetic variation in FKBP5 could influence its function and, ultimately, treatment response of pancreatic cancer.We set out to comprehensively study the role of genetic variation in FKBP5 identified by Next Generation DNA resequencing on response to gemcitabine treatment of pancreatic cancer by utilizing both tumor and germline DNA samples from 43 pancreatic cancer patients, including 19 paired normal-tumor samples. Next, genotype-phenotype association studies were performed with overall survival as well as with FKBP5 gene expression in tumor using the same samples in which resequencing had been performed, followed by functional genomics studies.In-depth resequencing identified 404 FKBP5 single nucleotide polymorphisms (SNPs in normal and tumor DNA. SNPs with the strongest associations with survival or FKBP5 expression were subjected to functional genomic study. Electromobility shift assay showed that the rs73748206 "A(T" SNP altered DNA-protein binding patterns, consistent with significantly increased reporter gene activity, possibly through its increased binding to Glucocorticoid Receptor (GR. The effect of rs73748206 was confirmed on the basis of its association with FKBP5 expression by affecting the binding to GR in lymphoblastoid cell lines derived from the same patients for whom DNA was used for resequencing.This comprehensive FKBP5 resequencing study provides insights into the role of genetic variation in variation of gemcitabine response.

Compact 6 dB Two-Color Continuous Variable Entangled Source Based on a Single Ring Optical Resonator

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Ning Wang

2018-02-01

Full Text Available Continuous-variable entangled optical beams at the degenerate wavelength of 0.8 μm or 1.5 μm have been investigated extensively, but separately. The two-color entangled states of these two useful wavelengths, with sufficiently high degrees of entanglement, still lag behind. In this work, we analyze the various limiting factors that affect the entanglement degree. On the basis of this, we successfully achieve 6 dB of two-color quadrature entangled light beams by improving the escape efficiency of the nondegenerate optical amplifier, the stability of the phase-locking servo system, and the detection efficiency. Our entangled source is constructed only from a single ring optical resonator, and thus is highly compact, which is suitable for applications in long-distance quantum communication networks.

The Variable Crab Nebula: Evidence for a Connection Between GeV Flares and Hard X-ray Variations

Science.gov (United States)

Wilson-Hodge, Colleen A.; Harding, A. K.; Hays, E. A.; Cherry, M. L.; Case, G. L.; Finger, M. H.; Jenke, P.; Zhang, X.

2016-01-01

In 2010, hard X-ray variations (Wilson-Hodge et al. 2011) and GeV flares (Tavani et al 2011, Abdo et al. 2011) from the Crab Nebula were discovered. Connections between these two phenomena were unclear, in part because the timescales were quite different, with yearly variations in hard X-rays and hourly to daily variations in the GeV flares. The hard X-ray flux from the Crab Nebula has again declined since 2014, much like it did in 2008-2010. During both hard X-ray decline periods, the Fermi LAT detected no GeV flares, suggesting that injection of particles from the GeV flares produces the much slower and weaker hard X-ray variations. The timescale for the particles emitting the GeV flares to lose enough energy to emit synchrotron photons in hard X-rays is consistent with the yearly variations observed in hard X-rays and with the expectation that the timescale for variations slowly increases with decreasing energy. This hypothesis also predicts even slower and weaker variations below 10 keV, consistent with the non-detection of counterparts to the GeV flares by Chandra (Weisskopf et al 2013). We will present a comparison of the observed hard X-ray variations and a simple model of the decay of particles from the GeV flares to test our hypothesis.

Objectifying Tactics: Athlete and Race Variability in Elite Short-Track Speed Skating.

Science.gov (United States)

Konings, Marco J; Hettinga, Florentina J

2018-02-01

To objectively capture and understand tactical considerations in a race, the authors explored whether race-to-race variation of an athlete and the variation of competitors within a race could provide insight into how and when athletes modify their pacing decisions in response to other competitors. Lap times of elite 500-, 1000-, and 1500-m short-track speed-skating competitions from 2011 to 2016 (N = 6965 races) were collected. Log-transformed lap and finishing times were analyzed with mixed linear models. To determine within-athlete race-to-race variability, athlete identity (between-athletes differences) and the residual (within-athlete race-to-race variation) were added as random effects. To determine race variability, race identity (between-races differences) and the residual (within-race variation) were added as random effects. Separate analyses were performed for each event. Within-athlete race-to-race variability of the finishing times increased with prolonged distance of the event (500-m, CV = 1.6%; 1000-m, CV = 2.8%; 1500-m, CV = 4.1%), mainly due to higher within-athlete race-to-race variability in the initial phase of 1000-m (3.3-6.9%) and 1500-m competitions (8.7-12.2%). During these early stages, within-race variability is relatively low in 1000-m (1.1-1.4%) and 1500-m (1.3-2.8%) competitions. The present study demonstrated how analyses of athlete and race variability could provide insight into tactical pacing decisions in sports where finishing position is emphasized over finishing time. The high variability of short-track skaters is a result of the decision to alter initial pacing behavior based on the behavior of other competitors in their race, emphasizing the importance of athlete-environment interactions in the context of pacing.

Short-term heat load forecasting for single family houses

DEFF Research Database (Denmark)

Bacher, Peder; Madsen, Henrik; Nielsen, Henrik Aalborg

2013-01-01

This paper presents a method for forecasting the load for space heating in a single-family house. The forecasting model is built using data from sixteen houses located in Sønderborg, Denmark, combined with local climate measurements and weather forecasts. Every hour the hourly heat load for each...... house the following two days is forecasted. The forecast models are adaptive linear time-series models and the climate inputs used are: ambient temperature, global radiation and wind speed. A computationally efficient recursive least squares scheme is used. The models are optimized to fit the individual...... noise and that practically all correlation to the climate variables are removed. Furthermore, the results show that the forecasting errors mainly are related to: unpredictable high frequency variations in the heat load signal (predominant only for some houses), shifts in resident behavior patterns...

Intra-Night Variability of OJ 287 with Long-Term Multiband Optical Monitoring

Directory of Open Access Journals (Sweden)

Wei Zeng

2017-11-01

Full Text Available We present long-term optical multi-band photometric monitoring of the blazar OJ 287 from 6 March 2010 to 3 April 2016, with high temporal resolution in the V R I -bands. The flux variations and colour-magnitude variations on long and short timescales were investigated to understand the emission mechanisms. In our observation, the major outbursts occurred in January 2016, as predicted by the binary pair of black holes model for OJ 287, with F v a r of 1.3∼2.1%, and variability amplitude (Amp of 5.8∼9.0%. The intra-night variability (IDV durations were from 18.5 to 51.3 min, and the minimal variability timescale was about 4.7 min. The colour-magnitude variation showed a weak positive correlation on the long timescale with Pearson’s r = 0 . 450 , while a negative correlation was found on intra-night timescales. We briefly discuss the possible physical mechanisms that are most likely to be responsible for the observed flux and colour-magnitude correlation variability.

Large Interstellar Polarisation Survey. II. UV/optical study of cloud-to-cloud variations of dust in the diffuse ISM

Science.gov (United States)

Siebenmorgen, R.; Voshchinnikov, N. V.; Bagnulo, S.; Cox, N. L. J.; Cami, J.; Peest, C.

2018-03-01

It is well known that the dust properties of the diffuse interstellar medium exhibit variations towards different sight-lines on a large scale. We have investigated the variability of the dust characteristics on a small scale, and from cloud-to-cloud. We use low-resolution spectro-polarimetric data obtained in the context of the Large Interstellar Polarisation Survey (LIPS) towards 59 sight-lines in the Southern Hemisphere, and we fit these data using a dust model composed of silicate and carbon particles with sizes from the molecular to the sub-micrometre domain. Large (≥6 nm) silicates of prolate shape account for the observed polarisation. For 32 sight-lines we complement our data set with UVES archive high-resolution spectra, which enable us to establish the presence of single-cloud or multiple-clouds towards individual sight-lines. We find that the majority of these 35 sight-lines intersect two or more clouds, while eight of them are dominated by a single absorbing cloud. We confirm several correlations between extinction and parameters of the Serkowski law with dust parameters, but we also find previously undetected correlations between these parameters that are valid only in single-cloud sight-lines. We find that interstellar polarisation from multiple-clouds is smaller than from single-cloud sight-lines, showing that the presence of a second or more clouds depolarises the incoming radiation. We find large variations of the dust characteristics from cloud-to-cloud. However, when we average a sufficiently large number of clouds in single-cloud or multiple-cloud sight-lines, we always retrieve similar mean dust parameters. The typical dust abundances of the single-cloud cases are [C]/[H] = 92 ppm and [Si]/[H] = 20 ppm.

SPECTROSCOPIC VARIABILITY OF IRAS 22272+5435

International Nuclear Information System (INIS)

Začs, Laimons; Grankina, Aija; Musaev, Faig; Kaminsky, Bogdan; Pavlenko, Yakiv; Sperauskas, Julius; Hrivnak, Bruce J.

2016-01-01

A time series of high-resolution spectra was observed in the optical wavelength region for the bright proto-planetary nebula IRAS 22272+5435 (HD 235858), along with a simultaneous monitoring of its radial velocity and BV R C magnitudes. The object is known to vary in light, color, and velocity owing to pulsation with a period of 132 days. The light and color variations are accompanied by significant changes in spectral features, most of which are identified as lines of carbon-bearing molecules. According to the observations, the C 2 Swan system and CN Red system lines are stronger near the light minimum. A photospheric spectrum of the central star was calculated using new self-consistent atmospheric models. The observed intensity variations in the C 2 Swan system and CN Red system lines were found to be much larger than expected if due solely to the temperature variation in the atmosphere of the pulsating star. In addition, the molecular lines are blueshifted relative to the photospheric velocity. The site of formation of the strong molecular features appears to be a cool outflow triggered by the pulsation. The variability in atomic lines seems to be mostly due variations of the effective temperature during the pulsation cycle. The profiles of strong atomic lines are split, and some of them are variable in a timescale of a week or so, probably because of shock waves in the outer atmosphere

Selectivity of N170 for visual words in the right hemisphere: Evidence from single-trial analysis.

Science.gov (United States)

Yang, Hang; Zhao, Jing; Gaspar, Carl M; Chen, Wei; Tan, Yufei; Weng, Xuchu

2017-08-01

Neuroimaging and neuropsychological studies have identified the involvement of the right posterior region in the processing of visual words. Interestingly, in contrast, ERP studies of the N170 typically demonstrate selectivity for words more strikingly over the left hemisphere. Why is right hemisphere selectivity for words during the N170 epoch typically not observed, despite the clear involvement of this region in word processing? One possibility is that amplitude differences measured on averaged ERPs in previous studies may have been obscured by variation in peak latency across trials. This study examined this possibility by using single-trial analysis. Results show that words evoked greater single-trial N170s than control stimuli in the right hemisphere. Additionally, we observed larger trial-to-trial variability on N170 peak latency for words as compared to control stimuli over the right hemisphere. Results demonstrate that, in contrast to much of the prior literature, the N170 can be selective to words over the right hemisphere. This discrepancy is explained in terms of variability in trial-to-trial peak latency for responses to words over the right hemisphere. © 2017 Society for Psychophysiological Research.

A novel variable antibody fragment dimerized by leucine zippers with enhanced neutralizing potency against rabies virus G protein compared to its corresponding single-chain variable antibody fragment.

Science.gov (United States)

Li, Zhuang; Cheng, Yue; Xi, Hualong; Gu, Tiejun; Yuan, Ruosen; Chen, Xiaoxu; Jiang, Chunlai; Kong, Wei; Wu, Yongge

2015-12-01

Fatal rabies can be prevented effectively by post-exposure prophylactic (PEP) with rabies immunoglobulin (RIG). Single-chain variable fragments (scFv), which are composed of a variable heavy chain (VH) and a variable light chain (VL) connected by a peptide linker, can potentially be used to replace RIG. However, in our previous study, a scFv (scFV57S) specific for the rabies virus (RV) G protein showed a lower neutralizing potency than that of its parent IgG due to lower stability and altered peptide assembly pattern. In monoclonal antibodies, the VH and VL interact non-covalently, while in scFvs the VH is connected covalently with the VL by the artificial linker. In this study, we constructed and expressed two peptides 57VL-JUN-HIS and 57VH-FOS-HA in Escherichia coli. The well-known Fos and Jun leucine zippers were utilized to dimerize VH and VL similarly to the IgG counterpart. The two peptides assembled to form zipFv57S in vitro. Due to the greater similarity in structure with IgG, the zipFv57S protein showed a higher binding ability and affinity resulting in notable improvement of in vitro neutralizing activity over its corresponding scFv. The zipFv57S protein was also found to be more stable and showed similar protective rate as RIG in mice challenged with a lethal dose of RV. Our results not only indicated zipFv57S as an ideal alternative for RIG in PEP but also offered a novel and efficient hetero-dimerization pattern of VH and VL leading to enhanced neutralizing potency. Copyright © 2015. Published by Elsevier Ltd.

Association of FLG single nucleotide variations with clinical phenotypes of atopic dermatitis.

Directory of Open Access Journals (Sweden)

Myungshin Kim

Full Text Available FLG encodes a large protein called profilaggrin, which plays a key role in maintaining an effective skin barrier against the environment. In this study, we identified FLG single nucleotide variations (FLG-SNVs and evaluated the association of FLG-SNVs with clinical phenotypes including atopic dermatitis (AD-associated minor clinical features, presence of specific allergic sensitization, and serum parameters.Eighty-one Korean patients with AD were enrolled. AD-associated minor clinical features as well as allergic rhinitis and asthma were diagnosed by specialists. FLG-SNVs were identified by Sanger sequencing of entire exons through long-range PCR. Allergic sensitization to a specific allergen was evaluated by multiple allergen simultaneous test. Serologic parameters such as serum eosinophil cationic protein (ECP and eosinophil derived neurotoxin (EDN were measured.A total of seventy-three SNVs and 4 LOF mutations were successfully genotyped. rs71626704 and rs76413899 were significantly associated with a history of asthma and cheilitis (P = 0.002 and P = 0.033, respectively, however, the associations were not found statistically significant after adjustment by multiple comparisons. In addition, we detected haplotype blocks which were correlated with non-specific hand or foot dermatitis and scalp scale. We identified FLG-SNVs which were associated with sensitization to environmental allergens; rs62623409 and rs71625199 (P = 0.038 and P = 0.008, respectively. Patients with FLG P478S TT and history of allergic rhinitis showed a higher EDN level, and among those patients, the ones with asthma showed a higher ECP level.This study revealed the association of FLG-SNVs with AD-associated minor clinical features. We firstly identified rs71625199 which was associated with higher environmental allergic sensitization. We also suggest that FLG P478S is a kind of disease modifier which affects serologic parameters such as EDN and ECP.

The problem of diagnostic variability in general practice.

Science.gov (United States)

Crombie, D L; Cross, K W; Fleming, D M

1992-08-01

The aim was to examine the scale, source, and relevance of variation between general practices in respect of the rates with which patients consulted with illnesses falling in each of several diagnostic groups. This study involved a general practice morbidity survey conducted over two years, 1970-72. All patients who consulted their general practitioners were identified and the number of these who consulted with diagnoses attributable to each of the 18 main chapters of the International classification of diseases were counted. Patients who consulted for more than one diagnosis within a chapter were counted once only; those who consulted for one or more diagnoses in each of several chapters were counted once for each chapter. This was a national survey involving general practitioners in England and Wales. The study involved 214,524 patients from 53 selected general practices (115 doctors) who were registered with their general practitioners for the whole of the year 1970-71 and for whom their morbidity data had been linked with their social data from the 1971 census. Using the numbers of patients on the practice lists as denominators, practice patient consulting rates (PPCR) were calculated for each practice and for each ICD chapter. Variability in chapter PPCR was examined by calculating coefficients of variation and, after allowance for random variation, coefficients of residual variation. There were large interpractice (doctor) variations in all chapter rates. These variations were only marginally attributable to: chance; different age, sex and social class mixes of practice populations; geographical locations; and practice organisation. The rates were, however, consistent from one year to the next for any one practice. Approximately half of the interpractice (doctor) diagnostic variability was associated with overall patient consulting behaviour. When the effects of this behaviour were discounted, any major residual diagnostic variability was confined largely to

Geographical and temporal variation of regional development and innovation in Finland

DEFF Research Database (Denmark)

Makkonen, Teemu; Inkinen, Tommi

2015-01-01

Variations in regional development are basically carried forward by technological development together with spatial concentrations of production and finance. The main argument behind this paper is that innovation and regional development variables have temporal variations in a spatial context....... Analysis was conducted using principal component indices from the years 1995–2007 to provide a temporal trend perspective of the most successful locations in innovation activity and regional development. Availability of an extensive workforce, income and higher education have steadily been the most...... “distinct” variables corresponding to regional development in Finland, whereas innovation occupies a stable middling position among explanative variables. Regional development and innovation activity is still concentrated in the core urban regions, but this tendency has lost at least some of its importance....

Computational Analysis of Single Nucleotide Polymorphisms Associated with Altered Drug Responsiveness in Type 2 Diabetes

Directory of Open Access Journals (Sweden)

Valerio Costa

2016-06-01

Full Text Available Type 2 diabetes (T2D is one of the most frequent mortality causes in western countries, with rapidly increasing prevalence. Anti-diabetic drugs are the first therapeutic approach, although many patients develop drug resistance. Most drug responsiveness variability can be explained by genetic causes. Inter-individual variability is principally due to single nucleotide polymorphisms, and differential drug responsiveness has been correlated to alteration in genes involved in drug metabolism (CYP2C9 or insulin signaling (IRS1, ABCC8, KCNJ11 and PPARG. However, most genome-wide association studies did not provide clues about the contribution of DNA variations to impaired drug responsiveness. Thus, characterizing T2D drug responsiveness variants is needed to guide clinicians toward tailored therapeutic approaches. Here, we extensively investigated polymorphisms associated with altered drug response in T2D, predicting their effects in silico. Combining different computational approaches, we focused on the expression pattern of genes correlated to drug resistance and inferred evolutionary conservation of polymorphic residues, computationally predicting the biochemical properties of polymorphic proteins. Using RNA-Sequencing followed by targeted validation, we identified and experimentally confirmed that two nucleotide variations in the CAPN10 gene—currently annotated as intronic—fall within two new transcripts in this locus. Additionally, we found that a Single Nucleotide Polymorphism (SNP, currently reported as intergenic, maps to the intron of a new transcript, harboring CAPN10 and GPR35 genes, which undergoes non-sense mediated decay. Finally, we analyzed variants that fall into non-coding regulatory regions of yet underestimated functional significance, predicting that some of them can potentially affect gene expression and/or post-transcriptional regulation of mRNAs affecting the splicing.

Perbandingan Passive LC Filter Dan Passve Single Tuned Filter Untuk Mereduksi Harmonisa Variable Speed Drive Dengan Beban Motor Induksi Tiga Fasa

OpenAIRE

Mustamam

2016-01-01

Most of the tools that used as speed control of three phase induction motors rotation is 1 phase Variable Speed Drive (VSD), where VSD is a harmonic generator. Therefore the harmonics that arise in the VSD can be reduced by using passive LC filters fasif namely passive single tuned filter that meet the standards IEC61000-3-2 Class A.The results obtained through passive LC filter could reduce the total distortion of harmonic current (THDi) from 102.9% to 23.78% while passive sin...

Variationally Optimized Free-Energy Flooding for Rate Calculation

Science.gov (United States)

McCarty, James; Valsson, Omar; Tiwary, Pratyush; Parrinello, Michele

2015-08-01

We propose a new method to obtain kinetic properties of infrequent events from molecular dynamics simulation. The procedure employs a recently introduced variational approach [Valsson and Parrinello, Phys. Rev. Lett. 113, 090601 (2014)] to construct a bias potential as a function of several collective variables that is designed to flood the associated free energy surface up to a predefined level. The resulting bias potential effectively accelerates transitions between metastable free energy minima while ensuring bias-free transition states, thus allowing accurate kinetic rates to be obtained. We test the method on a few illustrative systems for which we obtain an order of magnitude improvement in efficiency relative to previous approaches and several orders of magnitude relative to unbiased molecular dynamics. We expect an even larger improvement in more complex systems. This and the ability of the variational approach to deal efficiently with a large number of collective variables will greatly enhance the scope of these calculations. This work is a vindication of the potential that the variational principle has if applied in innovative ways.

Genetic variations in multiple myeloma II

DEFF Research Database (Denmark)

Vangsted, A.; Klausen, T.W.; Vogel, U.

2012-01-01

Association studies on genetic variation to treatment effect may serve as a predictive marker for effect of treatment and can also uncover biological pathways behind drug effect. Single-nucleotide polymorphisms (SNPs) have been studied in relation to high-dose treatment (HDT), thalidomide- and bo...

Development of an Indirect Competitive Enzyme-Linked Immunosorbent Assay for Glycocholic Acid Based on Chicken Single-Chain Variable Fragment Antibodies.

Science.gov (United States)

Cui, Xiping; Vasylieva, Natalia; Wu, Panpan; Barnych, Bogdan; Yang, Jun; Shen, Ding; He, Qiyi; Gee, Shirley J; Zhao, Suqing; Hammock, Bruce D

2017-10-17

Glycocholic acid (GCA) is an important metabolite of bile acids, whose urine levels are expected to be a specific diagnostic biomarker for hepatocellular carcinoma (HCC). A high-throughput immunoassay for determination of GCA would be of significant advantage and useful for primary diagnosis, surveillance, and early detection of HCC. Single-chain variable fragment (scFv) antibodies have several desirable characteristics and are an attractive alternative to traditional antibodies for the immunoassay. Because chicken antibodies possess single heavy and light variable functional domains, they are an ideal framework for simplified generation of recombinant antibodies for GCA detection. However, chicken scFvs have rarely been used to detect GCA. In this study, a scFv library was generated from chickens immunized with a GCA hapten coupled to bovine serum albumin (BSA), and anti-GCA scFvs were isolated by a phage-displayed method. Compared to the homologous coating antigen, use of a heterologous coating antigen resulted in about an 85-fold improvement in sensitivity of the immunoassay. This assay, under optimized conditions, had a linear range of 0.02-0.18 μg/mL, with an IC 50 of 0.06 μg/mL. The assay showed negligible cross-reactivity with various related bile acids, except for taurocholic acid. The detection of GCA from spiked human urine samples ranged from 86.7% to 123.3%. These results, combined with the advantages of scFv antibodies, indicated that a chicken scFv-based enzyme-linked immunosorbent assay is a suitable method for high-throughput screening of GCA in human urine.

The POINT-AGAPE Survey I: The Variable Stars in M31

CERN Document Server

An Jun Hong; Hewett, P C; Baillon, Paul; Calchi-Novati, S; Carr, B J; Creze, M; Giraud-Héraud, Yannick; Gould, A; Jetzer, P; Kaplan, J; Kerins, E; Paulin-Henriksson, S; Smartt, S J; Stalin, C S; Tsapras, Y; An, Jin H.; Jetzer, Ph.

2004-01-01

The POINT-AGAPE collaboration has been monitoring M31 for three seasons with the Wide Field Camera on the Isaac Newton Telescope. In each season, data are taken for one hour per night for roughly sixty nights during the six months that M31 is visible. The two fields of view straddle the central bulge, northwards and southwards. We have calculated the locations, periods and amplitudes of 35414 variable stars in M31 as a by-product of our microlensing search. The variables are classified according to their period and amplitude of variation. They are classified into population I and II Cepheids, Miras and semi-regular long-period variables. The population I Cepheids are associated with the spiral arms, while the central concentration of the Miras and long-period variables varies noticeably, the stars with brighter (and shorter) variations being much more centrally concentrated. A crucial role in the microlensing experiment is played by the asymmetry signal. It was initially assumed that the variable stars would ...

Finite element approximation of a new variational principle for compressible and incompressible linear isotropic elasticity

International Nuclear Information System (INIS)

Franca, L.P.; Stenberg, R.

1989-06-01

Stability conditions are described to analyze a variational formulation emanating from a variational principle for linear isotropic elasticity. The variational principle is based on four dependent variables (namely, the strain tensor, augmented stress, pressure and displacement) and is shown to be valid for any compressibility including the incompressible limit. An improved convergence error analysis is established for a Galerkin-least-squares method based upon these four variables. The analysis presented establishes convergence for a wide choice of combinations of finite element interpolations. (author) [pt

Regional variation in electroconvulsive therapy use.

LENUS (Irish Health Repository)

Dunne, R

2011-03-01

Although electroconvulsive therapy (ECT) is the most powerful treatment for depression, substantial variability in use has been described in Ireland. The Mental Health Commission collects usage data from approved centres but does not include home addresses or independent sector patients. Therefore, estimates of regional variation cannot be accurate, e.g. 145 (35% of total) independent sector patients were omitted from their 2008 analysis. When public and independent sector patients are combined inter-regional variation for 2008 is more than halved (chi-squared decreased from 83 to 30), with Western region contributing most to variation (chi-squared = 43). Ratio of ECT programmes to depressed admissions correlated negatively with rate for depressed admissions (r = -0.53, p = 0.01), while depressed admission numbers correlated with acute beds per area (r = 0.68, p = 0.001). Regional variation in ECT is less than previously reported; service factors probably account for much of this with smaller centres admitting severely ill patients more likely to require ECT.

High spatial variation in population size and symbiotic performance of Rhizobium leguminosarum bv. trifolii with white clover in New Zealand pasture soils

Science.gov (United States)

Tillard, Guyléne; van Ham, Robert; Ballard, Ross; Farquharson, Elizabeth; Gerard, Emily; Geurts, Rene; Brown, Matthew; Ridgway, Hayley; O’Callaghan, Maureen

2018-01-01

Biological nitrogen fixation through the legume-rhizobia symbiosis is important for sustainable pastoral production. In New Zealand, the most widespread and valuable symbiosis occurs between white clover (Trifolium repens L.) and Rhizobium leguminosarum bv. trifolii (Rlt). As variation in the population size (determined by most probable number assays; MPN) and effectiveness of N-fixation (symbiotic potential; SP) of Rlt in soils may affect white clover performance, the extent in variation in these properties was examined at three different spatial scales: (1) From 26 sites across New Zealand, (2) at farm-wide scale, and (3) within single fields. Overall, Rlt populations ranged from 95 to >1 x 108 per g soil, with variation similar at the three spatial scales assessed. For almost all samples, there was no relationship between rhizobia population size and ability of the population to fix N during legume symbiosis (SP). When compared with the commercial inoculant strain, the SP of soils ranged between 14 to 143% efficacy. The N-fixing ability of rhizobia populations varied more between samples collected from within a single hill country field (0.8 ha) than between 26 samples collected from diverse locations across New Zealand. Correlations between SP and calcium and aluminium content were found in all sites, except within a dairy farm field. Given the general lack of association between SP and MPN, and high spatial variability of SP at single field scale, provision of advice for treating legume seed with rhizobia based on field-average MPN counts needs to be carefully considered. PMID:29489845

Statistical validity of using ratio variables in human kinetics research.

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Liu, Yuanlong; Schutz, Robert W

2003-09-01

The purposes of this study were to investigate the validity of the simple ratio and three alternative deflation models and examine how the variation of the numerator and denominator variables affects the reliability of a ratio variable. A simple ratio and three alternative deflation models were fitted to four empirical data sets, and common criteria were applied to determine the best model for deflation. Intraclass correlation was used to examine the component effect on the reliability of a ratio variable. The results indicate that the validity, of a deflation model depends on the statistical characteristics of the particular component variables used, and an optimal deflation model for all ratio variables may not exist. Therefore, it is recommended that different models be fitted to each empirical data set to determine the best deflation model. It was found that the reliability of a simple ratio is affected by the coefficients of variation and the within- and between-trial correlations between the numerator and denominator variables. It was recommended that researchers should compute the reliability of the derived ratio scores and not assume that strong reliabilities in the numerator and denominator measures automatically lead to high reliability in the ratio measures.

Longitudinal Variation of the Lunar Tide in the Equatorial Electrojet

Science.gov (United States)

Yamazaki, Yosuke; Stolle, Claudia; Matzka, Jürgen; Siddiqui, Tarique A.; Lühr, Hermann; Alken, Patrick

2017-12-01

The atmospheric lunar tide is one known source of ionospheric variability. The subject received renewed attention as recent studies found a link between stratospheric sudden warmings and amplified lunar tidal perturbations in the equatorial ionosphere. There is increasing evidence from ground observations that the lunar tidal influence on the ionosphere depends on longitude. We use magnetic field measurements from the CHAMP satellite during July 2000 to September 2010 and from the two Swarm satellites during November 2013 to February 2017 to determine, for the first time, the complete seasonal-longitudinal climatology of the semidiurnal lunar tidal variation in the equatorial electrojet intensity. Significant longitudinal variability is found in the amplitude of the lunar tidal variation, while the longitudinal variability in the phase is small. The amplitude peaks in the Peruvian sector (˜285°E) during the Northern Hemisphere winter and equinoxes, and in the Brazilian sector (˜325°E) during the Northern Hemisphere summer. There are also local amplitude maxima at ˜55°E and ˜120°E. The longitudinal variation is partly due to the modulation of ionospheric conductivities by the inhomogeneous geomagnetic field. Another possible cause of the longitudinal variability is neutral wind forcing by nonmigrating lunar tides. A tidal spectrum analysis of the semidiurnal lunar tidal variation in the equatorial electrojet reveals the dominance of the westward propagating mode with zonal wave number 2 (SW2), with secondary contributions by westward propagating modes with zonal wave numbers 3 (SW3) and 4 (SW4). Eastward propagating waves are largely absent from the tidal spectrum. Further study will be required for the relative importance of ionospheric conductivities and nonmigrating lunar tides.

The non-planar single-frequency ring laser with variable output coupling

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Wu, Ke-ying; Yang, Su-hui; Wei, Guang-hui

2002-03-01

We put forward a novel non-planar single-frequency ring laser, which consists of a corner cube prism and a specially cut Porro prism made by Nd:YAG crystal. The relative angle between the corner cube and the Porro prism could be adjusted to control the output coupling of the laser resonator and the polarization-state of the output laser. A 1.06 μm single-frequency laser with 1 W output has been obtained.

Comprehensive Modeling and Analysis of Rotorcraft Variable Speed Propulsion System With Coupled Engine/Transmission/Rotor Dynamics

Science.gov (United States)

DeSmidt, Hans A.; Smith, Edward C.; Bill, Robert C.; Wang, Kon-Well

2013-01-01

This project develops comprehensive modeling and simulation tools for analysis of variable rotor speed helicopter propulsion system dynamics. The Comprehensive Variable-Speed Rotorcraft Propulsion Modeling (CVSRPM) tool developed in this research is used to investigate coupled rotor/engine/fuel control/gearbox/shaft/clutch/flight control system dynamic interactions for several variable rotor speed mission scenarios. In this investigation, a prototypical two-speed Dual-Clutch Transmission (DCT) is proposed and designed to achieve 50 percent rotor speed variation. The comprehensive modeling tool developed in this study is utilized to analyze the two-speed shift response of both a conventional single rotor helicopter and a tiltrotor drive system. In the tiltrotor system, both a Parallel Shift Control (PSC) strategy and a Sequential Shift Control (SSC) strategy for constant and variable forward speed mission profiles are analyzed. Under the PSC strategy, selecting clutch shift-rate results in a design tradeoff between transient engine surge margins and clutch frictional power dissipation. In the case of SSC, clutch power dissipation is drastically reduced in exchange for the necessity to disengage one engine at a time which requires a multi-DCT drive system topology. In addition to comprehensive simulations, several sections are dedicated to detailed analysis of driveline subsystem components under variable speed operation. In particular an aeroelastic simulation of a stiff in-plane rotor using nonlinear quasi-steady blade element theory was conducted to investigate variable speed rotor dynamics. It was found that 2/rev and 4/rev flap and lag vibrations were significant during resonance crossings with 4/rev lagwise loads being directly transferred into drive-system torque disturbances. To capture the clutch engagement dynamics, a nonlinear stick-slip clutch torque model is developed. Also, a transient gas-turbine engine model based on first principles mean

The influence of solar system oscillation on the variability of the total solar irradiance

Science.gov (United States)

Yndestad, Harald; Solheim, Jan-Erik

2017-02-01

Total solar irradiance (TSI) is the primary quantity of energy that is provided to the Earth. The properties of the TSI variability are critical for understanding the cause of the irradiation variability and its expected influence on climate variations. A deterministic property of TSI variability can provide information about future irradiation variability and expected long-term climate variation, whereas a non-deterministic variability can only explain the past. This study of solar variability is based on an analysis of two TSI data series, one since 1700 A.D. and one since 1000 A.D.; a sunspot data series since 1610 A.D.; and a solar orbit data series from 1000 A.D. The study is based on a wavelet spectrum analysis. First, the TSI data series are transformed into a wavelet spectrum. Then, the wavelet spectrum is transformed into an autocorrelation spectrum to identify stationary, subharmonic and coincidence periods in the TSI variability. The results indicate that the TSI and sunspot data series have periodic cycles that are correlated with the oscillations of the solar position relative to the barycenter of the solar system, which is controlled by gravity force variations from the large planets Jupiter, Saturn, Uranus and Neptune. A possible explanation for solar activity variations is forced oscillations between the large planets and the solar dynamo. We find that a stationary component of the solar variability is controlled by the 12-year Jupiter period and the 84-year Uranus period with subharmonics. For TSI and sunspot variations, we find stationary periods related to the 84-year Uranus period. Deterministic models based on the stationary periods confirm the results through a close relation to known long solar minima since 1000 A.D. and suggest a modern maximum period from 1940 to 2015. The model computes a new Dalton-type sunspot minimum from approximately 2025 to 2050 and a new Dalton-type period TSI minimum from approximately 2040 to 2065.

Clinical variables in radiotracer biodistributions

International Nuclear Information System (INIS)

Lentle, B.C.; Scott, J.R.; Schmidt, R.P.; Noujaim, A.A.

1981-01-01

Radionuclide dosimetry must, by its nature, define tissue irradiation in terms of mean exposure in a population of a statistically acceptable size. In the daily practice of clinical nuclear medicine there are, however, quite large variations in the biodistribution of tracers and thus in resulting radiation doses. Age is a variable, particularly in respect of bone-seeking tracers. Sex imposes variations in radiation dose on account of the differing anatomical configurations of the gonads. Breast uptake and excretion of certain tracers in women are additional variables. Activity and occupation are occasional variables. Numerous iatrogenic causes of altered radiotracer biodistributions have been described. Cancer chemotherapy is a particularly potent cause of changed biodistributions while even a trivial matter such as preparing the skin with an iodine containing antiseptic may cause displacement of technetium from its compounds. In the blocking of thyroid uptake of radioiodines, there is good precedent for the manipulation of regional tissue dosimetry. It is possible to go beyond the mere cataloguing of these effects to look creatively at the subject of comparative tissue biodistributions and hence comparative dosimetry. Effects such as the clinical observation of the interference by cis-platinum with the usual biodistribution of radio-gallium suggest that such compounds can be used as probes each to lead to a better understanding of the mechanism of action of the other

Genetic variability of environmental sensitivity revealed by phenotypic variation in body weight and (its correlations to physiological and behavioral traits.

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Delphine Lallias

Full Text Available Adaptive phenotypic plasticity is a key component of the ability of organisms to cope with changing environmental conditions. Fish have been shown to exhibit a substantial level of phenotypic plasticity in response to abiotic and biotic factors. In the present study, we investigate the link between environmental sensitivity assessed globally (revealed by phenotypic variation in body weight and more targeted physiological and behavioral indicators that are generally used to assess the sensitivity of a fish to environmental stressors. We took advantage of original biological material, the rainbow trout isogenic lines, which allowed the disentangling of the genetic and environmental parts of the phenotypic variance. Ten lines were characterized for the changes of body weight variability (weight measurements taken every month during 18 months, the plasma cortisol response to confinement stress (3 challenges and a set of selected behavioral indicators. This study unambiguously demonstrated the existence of genetic determinism of environmental sensitivity, with some lines being particularly sensitive to environmental fluctuations and others rather insensitive. Correlations between coefficient of variation (CV for body weight and behavioral and physiological traits were observed. This confirmed that CV for body weight could be used as an indicator of environmental sensitivity. As the relationship between indicators (CV weight, risk-taking, exploration and cortisol was shown to be likely depending on the nature and intensity of the stressor, the joint use of several indicators should help to investigate the biological complexity of environmental sensitivity.

Causes and significance of variation in mammalian basal metabolism.

Science.gov (United States)

Raichlen, David A; Gordon, Adam D; Muchlinski, Magdalena N; Snodgrass, J Josh

2010-02-01

Mammalian basal metabolic rates (BMR) increase with body mass, whichs explains approximately 95% of the variation in BMR. However, at a given mass, there remains a large amount of variation in BMR. While many researchers suggest that the overall scaling of BMR with body mass is due to physiological constraints, variation at a given body mass may provide clues as to how selection acts on BMR. Here, we examine this variation in BMR in a broad sample of mammals and we test the hypothesis that, across mammals, body composition explains differences in BMR at a given body mass. Variation in BMR is strongly correlated with variation in muscle mass, and both of these variables are correlated with latitude and ambient temperature. These results suggest that selection alters BMR in response to thermoregulatory pressures, and that selection uses muscle mass as a means to generate this variation.

An optimum condition for attainment of a single currency project in West Africa

Directory of Open Access Journals (Sweden)

Moses Abanyam Chiawa

2014-01-01

Full Text Available The paper examines the primary and secondary convergence conditions for a monetary union in the second monetary zone for West Africa. The focus of the paper is on the primary conditions as they provide the basis for the secondary conditions. The annual panel data used for the research are obtained from the West African Monetary Agency website: www.wami.imao.org. The panel variables are first tested for unit root and stationarity. The panel unit root test results show that all the variables are integrated of order one. The stationarity test confirms the result, as the variables are non-stationarity in level but stationarity after first difference. The Long-run co integration equation is obtained using the pooled group mean estimator. Linear programming is then applied on the result of the long-run equationto obtain the optimal conditions for attainment of single currency project for West Africa. The result shows that the objective value of 0.0462 is obtained with inflation contributing more to the variation in the government external reserves. The Central Banks in West Africa should be cautious in implementing inflation targeting as a way of tackling their economic problem.

Somaclonal variation in rice

International Nuclear Information System (INIS)

Kucherenko, L.

1990-01-01

Full text: 32 varieties of Oryza sativa L. ssp. japonica were used as donors for callus induction from somatic tissues. In some cases, the callus was treated before regeneration with the chemical mutagen MNU. Some of the regenerated plants demonstrated heritable alterations, among them chlorophyll deficiencies, variation in plant height, awness, glume colouring and fertility. Along with these, a number of lines with agronomically valuable alterations concerning maturity time, panicle structure, plant productivity and grain quality were found. The spectrum of variability was very wide. Vivipary was noticed. Superdwarfs with plant height of about 15 cm were found. Plants with no visible distinctions could be variants too, for example, with increased protein content or disease resistance. The rate and the spectrum of the somaclonal variation were not influenced by the culture media but depended on the donor's genotype. On the basis of somaclonal variation a variety 'Bioryza' was developed. It is an early maturing (about 95-100 days), long grain variety, with grain yield up to 8 t/ha. (author)

Mid-infrared Variability of Changing-look AGNs

International Nuclear Information System (INIS)

Sheng, Zhenfeng; Wang, Tinggui; Jiang, Ning; Yang, Chenwei; Peng, Bo; Yan, Lin; Dou, Liming

2017-01-01

It is known that some active galactic nuclei (AGNs) transit from Type 1 to Type 2 or vice versa. There are two explanations for the so-called changing-look AGNs: one is the dramatic change of the obscuration along the line of sight, and the other is the variation of accretion rate. In this Letter, we report the detection of large amplitude variations in the mid-infrared luminosity during the transitions in 10 changing-look AGNs using the Wide-field Infrared Survey Explorer ( WISE ) and newly released Near-Earth Object WISE Reactivation data. The mid-infrared light curves of 10 objects echo the variability in the optical band with a time lag expected for dust reprocessing. The large variability amplitude is inconsistent with the scenario of varying obscuration, rather it supports the scheme of dramatic change in the accretion rate.

Mid-infrared Variability of Changing-look AGNs

Energy Technology Data Exchange (ETDEWEB)

Sheng, Zhenfeng; Wang, Tinggui; Jiang, Ning; Yang, Chenwei; Peng, Bo [CAS Key Laboratory for Researches in Galaxies and Cosmology, University of Sciences and Technology of China, Hefei, Anhui 230026 (China); Yan, Lin [Caltech Optical Observatories, Cahill Center for Astronomy and Astrophysics, California Institute of Technology, Pasadena, CA 91125 (United States); Dou, Liming, E-mail: shengzf@mail.ustc.edu.cn, E-mail: twang@ustc.edu.cn [Center for Astrophysics, Guangzhou University, Guangzhou 510006 (China)

2017-09-01

It is known that some active galactic nuclei (AGNs) transit from Type 1 to Type 2 or vice versa. There are two explanations for the so-called changing-look AGNs: one is the dramatic change of the obscuration along the line of sight, and the other is the variation of accretion rate. In this Letter, we report the detection of large amplitude variations in the mid-infrared luminosity during the transitions in 10 changing-look AGNs using the Wide-field Infrared Survey Explorer ( WISE ) and newly released Near-Earth Object WISE Reactivation data. The mid-infrared light curves of 10 objects echo the variability in the optical band with a time lag expected for dust reprocessing. The large variability amplitude is inconsistent with the scenario of varying obscuration, rather it supports the scheme of dramatic change in the accretion rate.

A suite of global, cross-scale topographic variables for environmental and biodiversity modeling

Science.gov (United States)

Amatulli, Giuseppe; Domisch, Sami; Tuanmu, Mao-Ning; Parmentier, Benoit; Ranipeta, Ajay; Malczyk, Jeremy; Jetz, Walter

2018-03-01

Topographic variation underpins a myriad of patterns and processes in hydrology, climatology, geography and ecology and is key to understanding the variation of life on the planet. A fully standardized and global multivariate product of different terrain features has the potential to support many large-scale research applications, however to date, such datasets are unavailable. Here we used the digital elevation model products of global 250 m GMTED2010 and near-global 90 m SRTM4.1dev to derive a suite of topographic variables: elevation, slope, aspect, eastness, northness, roughness, terrain roughness index, topographic position index, vector ruggedness measure, profile/tangential curvature, first/second order partial derivative, and 10 geomorphological landform classes. We aggregated each variable to 1, 5, 10, 50 and 100 km spatial grains using several aggregation approaches. While a cross-correlation underlines the high similarity of many variables, a more detailed view in four mountain regions reveals local differences, as well as scale variations in the aggregated variables at different spatial grains. All newly-developed variables are available for download at Data Citation 1 and for download and visualization at http://www.earthenv.org/topography.

Heart rate variability in healthy population

International Nuclear Information System (INIS)

Alamgir, M.; Hussain, M.M.

2010-01-01

Background: Heart rate variability has been considered as an indicator of autonomic status. Little work has been done on heart rate variability in normal healthy volunteers. We aimed at evolving the reference values of heart rate variability in our healthy population. Methods: Twenty-four hour holter monitoring of 37 healthy individuals was done using Holter ECG recorder 'Life card CF' from 'Reynolds Medical'. Heart rate variability in both time and frequency domains was analysed with 'Reynolds Medical Pathfinder Digital/700'. Results: The heart rate variability in normal healthy volunteers of our population was found in time domain using standard deviation of R-R intervals (SDNN), standard deviation of average NN intervals (SDANN), and Square root of the mean squared differences of successive NN intervals (RMSSD). Variation in heart rate variability indices was observed between local and foreign volunteers and RMSSD was found significantly increased (p<0.05) in local population. Conclusions: The values of heart rate variability (RMSSD) in healthy Pakistani volunteers were found increased compared to the foreign data reflecting parasympathetic dominance in our population. (author)

The temporal variability of species densities

International Nuclear Information System (INIS)

Redfearn, A.; Pimm, S.L.

1993-01-01

Ecologists use the term 'stability' to mean to number of different things (Pimm 1984a). One use is to equate stability with low variability in population density over time (henceforth, temporal variability). Temporal variability varies greatly from species to species, so what effects it? There are at least three sets of factors: the variability of extrinsic abiotic factors, food web structure, and the intrinsic features of the species themselves. We can measure temporal variability using at least three statistics: the coefficient of variation of density (CV); the standard deviation of the logarithms of density (SDL); and the variance in the differences between logarithms of density for pairs of consecutive years (called annual variability, hence AV, b y Wolda 1978). There are advantages and disadvantages to each measure (Williamson 1984), though in our experience, the measures are strongly correlated across sets of taxonomically related species. The increasing availability of long-term data sets allows one to calculate these statistics for many species and so to begin to understand the various causes of species differences in temporal variability

Perspectives for short timescale variability studies with Gaia

Science.gov (United States)

Roelens, M.; Eyer, L.; Mowlavi, N.; Lecoeur-Taïbi, I.; Rimoldini, L.; Blanco-Cuaresma, S.; Palaversa, L.; Süveges, M.; Charnas, J.; Wevers, T.

2017-12-01

We assess the potential of Gaia for detecting and characterizing short timescale variables, i.e. at timescale from a few seconds to a dozen hours, through extensive light-curve simulations for various short timescale variable types, including both periodic and non-periodic variability. We evidence that the variogram analysis applied to Gaia photometry should enable to detect such fast variability phenomena, down to amplitudes of a few millimagnitudes, with limited contamination from longer timescale variables or constant sources. This approach also gives valuable information on the typical timescale(s) of the considered variation, which could complement results of classical period search methods, and help prepare ground-based follow-up of the Gaia short timescale candidates.

Short-term variability of Cyg X-1

International Nuclear Information System (INIS)

Oda, M.; Doi, K.; Ogawara, Y.

1976-01-01

The short-term X-ray variability distinguishes Cyg X-1, which is the most likely candidate for a black hole, from other X-ray sources. The present status of our knowledge on this short-term variation, mainly from the UHURU, the MIT and the GSFC observations, is reviewed. The nature of impulsive variations which compose the time variation exceeding the statistical fluctuation is discussed. There are indications that the energy spectrum of large pulses is harder than the average spectrum, or that the large pulses are the characteristics of the hard component of the spectrum if it is composed of two, soft and hard, components. Features of the variations may be partly simulated by the superposition of random shot-noise pulses with a fraction of a second duration. However, the autocorrelation analysis and the dynamic spectrum analysis indicate that the correlation lasts for several seconds and in the variation are buried some regularities which exhibit power concentrations in several frequency bands; 0.2-0.3, 0.4-0.5, 0.8, 1.2-1.5 Hz. There are several possible interpretations of these results in terms of; e.g. (a) a mixture of shot-noise pulses with two or more constant durations, (b) the shape of the basic shot-noise pulse, (c) bunching of the pulses, (d) superposition of wave-packets or temporal oscillations. But we have not yet reached any definite understandings in the nature of the variabilities. The substructure of the fluctuations on a time scale of milliseconds suggested by two investigations is also discussed. (Auth.)