Predicting plankton net community production in the Atlantic Ocean

Science.gov (United States)

Serret, Pablo; Robinson, Carol; Fernández, Emilio; Teira, Eva; Tilstone, Gavin; Pérez, Valesca

2009-07-01

We present, test and implement two contrasting models to predict euphotic zone net community production (NCP), which are based on 14C primary production (PO 14CP) to NCP relationships over two latitudinal (ca. 30°S-45°N) transects traversing highly productive and oligotrophic provinces of the Atlantic Ocean (NADR, CNRY, BENG, NAST-E, ETRA and SATL, Longhurst et al., 1995 [An estimation of global primary production in the ocean from satellite radiometer data. Journal of Plankton Research 17, 1245-1271]). The two models include similar ranges of PO 14CP and community structure, but differ in the relative influence of allochthonous organic matter in the oligotrophic provinces. Both models were used to predict NCP from PO 14CP measurements obtained during 11 local and three seasonal studies in the Atlantic, Pacific and Indian Oceans, and from satellite-derived estimates of PO 14CP. Comparison of these NCP predictions with concurrent in situ measurements and geochemical estimates of NCP showed that geographic and annual patterns of NCP can only be predicted when the relative trophic importance of local vs. distant processes is similar in both modeled and predicted ecosystems. The system-dependent ability of our models to predict NCP seasonality suggests that trophic-level dynamics are stronger than differences in hydrodynamic regime, taxonomic composition and phytoplankton growth. The regional differences in the predictive power of both models confirm the existence of biogeographic differences in the scale of trophic dynamics, which impede the use of a single generalized equation to estimate global marine plankton NCP. This paper shows the potential of a systematic empirical approach to predict plankton NCP from local and satellite-derived P estimates.

Comprehensive model of annual plankton succession based on the whole-plankton time series approach.

Directory of Open Access Journals (Sweden)

Jean-Baptiste Romagnan

Full Text Available Ecological succession provides a widely accepted description of seasonal changes in phytoplankton and mesozooplankton assemblages in the natural environment, but concurrent changes in smaller (i.e. microbes and larger (i.e. macroplankton organisms are not included in the model because plankton ranging from bacteria to jellies are seldom sampled and analyzed simultaneously. Here we studied, for the first time in the aquatic literature, the succession of marine plankton in the whole-plankton assemblage that spanned 5 orders of magnitude in size from microbes to macroplankton predators (not including fish or fish larvae, for which no consistent data were available. Samples were collected in the northwestern Mediterranean Sea (Bay of Villefranche weekly during 10 months. Simultaneously collected samples were analyzed by flow cytometry, inverse microscopy, FlowCam, and ZooScan. The whole-plankton assemblage underwent sharp reorganizations that corresponded to bottom-up events of vertical mixing in the water-column, and its development was top-down controlled by large gelatinous filter feeders and predators. Based on the results provided by our novel whole-plankton assemblage approach, we propose a new comprehensive conceptual model of the annual plankton succession (i.e. whole plankton model characterized by both stepwise stacking of four broad trophic communities from early spring through summer, which is a new concept, and progressive replacement of ecological plankton categories within the different trophic communities, as recognised traditionally.

Increasing Water Temperature Triggers Dominance of Small Freshwater Plankton.

Science.gov (United States)

Rasconi, Serena; Gall, Andrea; Winter, Katharina; Kainz, Martin J

2015-01-01

Climate change scenarios predict that lake water temperatures will increase up to 4°C and rainfall events will become more intense and frequent by the end of this century. Concurrently, supply of humic substances from terrestrial runoff is expected to increase, resulting in darker watercolor ("brownification") of aquatic ecosystems. Using a multi-seasonal, low trophic state mesocosm experiment, we investigated how higher water temperature and brownification affect plankton community composition, phenology, and functioning. We tested the hypothesis that higher water temperature (+3°C) and brownification will, a) cause plankton community composition to shift toward small sized phytoplankton and cyanobacteria, and, b) extend the length of the growing season entailing higher phytoplankton production later in the season. We demonstrate that the 3°C increase of water temperature favored the growth of heterotrophic bacteria and small sized autotrophic picophytoplankton cells with significantly higher primary production during warmer fall periods. However, 3X darker water (effect of brownification) caused no significant changes in the plankton community composition or functioning relative to control conditions. Our findings reveal that increased temperature change plankton community structure by favoring smaller sized species proliferation (autotrophic phytoplankton and small size cladocerans), and increase primary productivity and community turnover. Finally, results of this multi-seasonal experiment suggest that warming by 3°C in aquatic ecosystems of low trophic state may cause planktonic food web functioning to become more dominated by fast growing, r-trait species (i.e., small sizes and rapid development).

DINAMIKA KOMUNITAS PLANKTON DI PERAIRAN EKOSISTEM HUTAN BAKAU SEGARA ANAKAN YANG SEDANG BERUBAH (Plankton Dynamic in the Changing Mangrove Ecosystem of Segara Anakan Central Java

Directory of Open Access Journals (Sweden)

Tjut Sugandawaty Djohan

2010-11-01

Full Text Available ABSTRAK Perairan hutan bakau Segara Anakan merupakan ekosistem yang sedang berubah karena sedimentasi yang tinggi sejak tahun 1980, dan telah mengakibatkan pendangkalan perainan dan mengganggu proses pasang surut. Perubahan ekosistem ini direspon oleh komunitas plankton. pada musim hujan tabun 2002 salinitas perairannya adalah 0 0/00' dan musim kemarau 20 – 32%. Perubahan komunitas plankton tersebut dicirikan hadimya komunitas baik phyto maupun zooplankton dominan sungai pada musim hujan, dan sebaliknya komunitas laut pada musim kemarau. Pada tahun 2004, karena pendangkalan di perairan Bondan, mudflat dan perairannya dikeruk. Penelitian ini bertujuan untuk mempelajari respon komunitas phyto dan zooplankton terhadap pernbanan ekosistem pada musim kemarau Agustus 2005 di daerah tangkapan ikan nelayan perairan Segara Anakan. Hasil menunjukkan bahwa ada peledakan kemelimpahan phytoplankton yang didommasi olehl populasi Chaetoceros di perairan Bondan dan Klaces sebanyak 206890 dan 397273 individu per 100 liter, dan populasi  Asterione/lajaponica meningkat sebanyak 69778 per 100 liter di perairan Cigatal. Peledakan kedua genus tersebut adalah merupakan respon phytoplankton terhadap meningkatnya kandungan PO4 di perairan oleh pengerukan sedimen di perairan Bondan. Kenaikan P04 di perairan berturut-berturut dari Bondan ke Cigatal sebesar 4,95 ppm, 5,88 ppm, dan 4,62 ppm. Pada musim kemarau, perairan Segara Anakan juga dicirikan dengan hadimya komunitas plankton sungai yaitu sebanyak 19 species phytoplankton, dan 9 spesies zooplankton. Peledakan populasi Chaetoceros tidak direspon oleh peledakan populasi zooplankton. Keadaan ini mencerminkan bahwa kualitas perairan Segara Anakan telah menurun.   ABSTRACT The mangrove ecosystem of Segara Anakan is in the process of changing to the freshwater-wetland due to the heavy sedimentation. This change was responded by the plankton communities. In the 2002 during the rainy season, the salinity

Increasing Water Temperature Triggers Dominance of Small Freshwater Plankton.

Directory of Open Access Journals (Sweden)

Serena Rasconi

Full Text Available Climate change scenarios predict that lake water temperatures will increase up to 4°C and rainfall events will become more intense and frequent by the end of this century. Concurrently, supply of humic substances from terrestrial runoff is expected to increase, resulting in darker watercolor ("brownification" of aquatic ecosystems. Using a multi-seasonal, low trophic state mesocosm experiment, we investigated how higher water temperature and brownification affect plankton community composition, phenology, and functioning. We tested the hypothesis that higher water temperature (+3°C and brownification will, a cause plankton community composition to shift toward small sized phytoplankton and cyanobacteria, and, b extend the length of the growing season entailing higher phytoplankton production later in the season. We demonstrate that the 3°C increase of water temperature favored the growth of heterotrophic bacteria and small sized autotrophic picophytoplankton cells with significantly higher primary production during warmer fall periods. However, 3X darker water (effect of brownification caused no significant changes in the plankton community composition or functioning relative to control conditions. Our findings reveal that increased temperature change plankton community structure by favoring smaller sized species proliferation (autotrophic phytoplankton and small size cladocerans, and increase primary productivity and community turnover. Finally, results of this multi-seasonal experiment suggest that warming by 3°C in aquatic ecosystems of low trophic state may cause planktonic food web functioning to become more dominated by fast growing, r-trait species (i.e., small sizes and rapid development.

Essential versus potentially toxic dietary substances: A seasonal comparison of essential fatty acids and methyl mercury concentrations in the planktonic food web

Energy Technology Data Exchange (ETDEWEB)

Kainz, Martin [Aquatic Ecosystem Management Research Division, National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 505, Burlington, ON L7R 4A6 (Canada)], E-mail: martin.kainz@donau-uni.ac.at; Arts, Michael T. [Water and Aquatic Sciences Research Program, University of Victoria, Department of Biology, P.O. Box 3020, Stn. CSC, Victoria, BC V8W 3N5 (Canada); Mazumder, Asit [Aquatic Ecosystem Management Research Division, National Water Research Institute, Environment Canada, 867 Lakeshore Road, P.O. Box 505, Burlington, ON L7R 4A6 (Canada)

2008-09-15

We investigated seasonal variability of essential fatty acids (EFA) and methyl mercury (MeHg) concentrations in four size categories of planktonic organisms in two coastal lakes. MeHg concentrations increased significantly with increasing plankton size and were independent of plankton taxonomy. However, total EFA increased from seston to mesozooplankton, but decreased in the cladoceran-dominated macrozooplankton size-class. Analysis of EFA patterns revealed that linoleic, alpha-linolenic, arachidonic, and eicosapentaenoic acids increased with increasing zooplankton size, but docosahexaenoic acid (DHA) in the cladoceran-dominated macrozooplankton was generally lower than in seston. This consistent pattern demonstrates that cladocerans, although bioaccumulating MeHg, convey less DHA than similar-sized copepods to their consumers. It is thus evident that fish consuming cladocerans have restricted access to DHA, yet unrestricted dietary access to MeHg. Thus, the structure of planktonic food webs clearly affects the composition of EFA and regulates dietary supply of these essential nutrients, while MeHg bioaccumulates with increasing zooplankton size. - The structure of planktonic food webs largely regulates the composition and dietary supply of essential fatty acids, while MeHg bioaccumulates with zooplankton size.

Essential versus potentially toxic dietary substances: A seasonal comparison of essential fatty acids and methyl mercury concentrations in the planktonic food web

International Nuclear Information System (INIS)

Kainz, Martin; Arts, Michael T.; Mazumder, Asit

2008-01-01

We investigated seasonal variability of essential fatty acids (EFA) and methyl mercury (MeHg) concentrations in four size categories of planktonic organisms in two coastal lakes. MeHg concentrations increased significantly with increasing plankton size and were independent of plankton taxonomy. However, total EFA increased from seston to mesozooplankton, but decreased in the cladoceran-dominated macrozooplankton size-class. Analysis of EFA patterns revealed that linoleic, alpha-linolenic, arachidonic, and eicosapentaenoic acids increased with increasing zooplankton size, but docosahexaenoic acid (DHA) in the cladoceran-dominated macrozooplankton was generally lower than in seston. This consistent pattern demonstrates that cladocerans, although bioaccumulating MeHg, convey less DHA than similar-sized copepods to their consumers. It is thus evident that fish consuming cladocerans have restricted access to DHA, yet unrestricted dietary access to MeHg. Thus, the structure of planktonic food webs clearly affects the composition of EFA and regulates dietary supply of these essential nutrients, while MeHg bioaccumulates with increasing zooplankton size. - The structure of planktonic food webs largely regulates the composition and dietary supply of essential fatty acids, while MeHg bioaccumulates with zooplankton size

Ecological Stoichiometry of Ocean Plankton

Science.gov (United States)

Moreno, Allison R.; Martiny, Adam C.

2018-01-01

Marine plankton elemental stoichiometric ratios can deviate from the Redfield ratio (106C:16N:1P); here, we examine physiological and biogeochemical mechanisms that lead to the observed variation across lineages, regions, and seasons. Many models of ecological stoichiometry blend together acclimative and adaptive responses to environmental conditions. These two pathways can have unique molecular mechanisms and stoichiometric outcomes, and we attempt to disentangle the two processes. We find that interactions between environmental conditions and cellular growth are key to understanding stoichiometric regulation, but the growth rates of most marine plankton populations are poorly constrained. We propose that specific physiological mechanisms have a strong impact on plankton and community stoichiometry in nutrient-rich environments, whereas biogeochemical interactions are important for the stoichiometry of the oligotrophic gyres. Finally, we outline key areas with missing information that is needed to advance understanding of the present and future ecological stoichiometry of ocean plankton.

Spatio-temporal pattern formation, fractals, and chaos in conceptual ecological models as applied to coupled plankton-fish dynamics

International Nuclear Information System (INIS)

Medvinskii, Aleksandr B; Tikhonova, Irina A; Tikhonov, D A; Ivanitskii, Genrikh R; Petrovskii, Sergei V; Li, B.-L.; Venturino, E; Malchow, H

2002-01-01

The current turn-of-the-century period witnesses the intensive use of the bioproducts of the World Ocean while at the same time calling for precautions to preserve its ecological stability. This requires that biophysical processes in aquatic systems be comprehensively explored and new methods for monitoring their dynamics be developed. While aquatic and terrestrial ecosystems have much in common in terms of their mathematical description, there are essential differences between them. For example, the mobility of oceanic plankton is mainly controlled by diffusion processes, whereas terrestrial organisms naturally enough obey totally different laws. This paper is focused on the processes underlying the dynamics of spatially inhomogeneous plankton communities. We demonstrate that conceptual reaction-diffusion mathematical models are an appropriate tool for investigating both complex spatio-temporal plankton dynamics and the fractal properties of planktivorous fish school walks. (reviews of topical problems)

Seasonal dynamics of plankton communities coupled with ...

African Journals Online (AJOL)

In this study, we studied the influence of the physical-chemical and biological factors (bacterioplankton and phytoplankton abundances) for zooplankton dynamics in a Sidi Saâd reservoir in Centre of Tunisia. The samplings were carried out in spring, summer, autumn and winter (2005 to 2006) in the deepest station (surface ...

Structure, seasonal dynamics and distribution of zooplankton in lake Drukshiai in 1994

International Nuclear Information System (INIS)

Mazheikaite, S.; Pashkauskas, R.

1995-01-01

Investigations on the zooplankton of Lake Drukshiai were carried out in 1994. There were registered 62 taxons of protozoa and 50 taxons of metazoa, and compared with the data of 1979 - 1986 the diversity of species composition decreased 2.1 times. Eurytermic and stenothermic thermophylic species prevailed in the plankton biocenosis. In protozooplankton dominated ciliates of subclasses teolotricha and spirotricha, in metazooplankton -planctonic crustacea (Copopeda and Cladocera). Rotifers (Rotaria) were abundant only in the shallow and heated water outlet area. Seasonal dynamics of protozooplankton indicated one maximum in spring and metazooplankton - in summer. High diferentiation in quantity and biomass of zooplankton in the lake revealed different level of eutrophication of some areas. (author). 7 refs., 5 figs

A Model of the Dynamics of Plankton Patchiness

Directory of Open Access Journals (Sweden)

Wolfgang Ebenhöh

1980-04-01

Full Text Available A mathematical model of the dynamics of plankton patchiness in the intermediate scale (1 km-10 km was developed. Mechanisms that may be important in the creation and destruction of patches were selected and modelled. Such mechanisms are: horizontal turbulent diffusion, noise in the vertical turbulence, vertical migration of the zooplankton combined with a velocity profile and consumption of zooplankton by fish in schools. Patchiness is described by thc usc of the moments of density distributions, coherence lengths and correlations of phytoplankton and zooplankton. These parameters are investigated as functions of time and, also, for their dependence on the parameters of the patch creation mechanisms.

[Interdependence of plankton spatial distribution and plancton biomass temporal oscillations: mathematical simulation].

Science.gov (United States)

Medvedinskiĭ, A B; Tikhonova, I A; Li, B L; Malchow, H

2003-01-01

The dynamics of aquatic biological communities in a patchy environment is of great interest in respect to interrelations between phenomena at various spatial and time scales. To study the complex plankton dynamics in relation to variations of such a biologically essential parameter as the fish predation rate, we use a simple reaction-diffusion model of trophic interactions between phytoplankton, zooplankton, and fish. We suggest that plankton is distributed between two habitats one of which is fish-free due to hydrological inhomogeneity, while the other is fish-populated. We show that temporal variations in the fish predation rate do not violate the strong correspondence between the character of spatial distribution of plankton and changes of plankton biomass in time: regular temporal oscillations of plankton biomass correspond to large-scale plankton patches, while chaotic oscillations correspond to small-scale plankton patterns. As in the case of the constant fish predation rate, the chaotic plankton dynamics is characterized by coexistence of the chaotic attractor and limit cycle.

Seasonal dynamics in colored dissolved organic matter in the Mediterranean Sea: Patterns and drivers

Science.gov (United States)

Xing, Xiaogang; Claustre, Hervé; Wang, Haili; Poteau, Antoine; D`Ortenzio, Fabrizio

2014-01-01

Two autonomous profiling “Bio-Argo” floats were deployed in the northwestern and eastern sub-basins of the Mediterranean Sea in 2008. They recorded at high vertical (1 m) and temporal (5 day) resolution, the vertical distribution and seasonal variation of colored dissolved organic matter (CDOM), as well as of chlorophyll-a concentration and hydrological variables. The CDOM standing stock presented a clear seasonal dynamics with the progressive summer formation and winter destruction of subsurface CDOM maxima (YSM, for Yellow Substance Maximum). It was argued that subsurface CDOM is a by-product of phytoplankton, based on two main characteristics, (1) the YSM was located at the same depth than the deep chlorophyll maximum (DCM) and (2) the CDOM increased in summer parallels the decline in chlorophyll-a. These observations suggested an indirect but tight coupling between subsurface CDOM and phytoplankton via microbial activity or planktonic foodweb interactions. Moreover, the surface CDOM variations observed both by floats and MODIS displayed different seasonal dynamics from what recorded at subsurface one. This implies that CDOM standing stock can be hardly detected by satellite. It is worthnoting that surface CDOM was found to be more related to the sea surface temperature (SST) than chlorophyll-a concentration, suggesting its physical origin, in contrast to the biological origin of YSM and subsurface standing stocks.

Common species link global ecosystems to climate change: dynamical evidence in the planktonic fossil record.

Science.gov (United States)

Hannisdal, Bjarte; Haaga, Kristian Agasøster; Reitan, Trond; Diego, David; Liow, Lee Hsiang

2017-07-12

Common species shape the world around us, and changes in their commonness signify large-scale shifts in ecosystem structure and function. However, our understanding of long-term ecosystem response to environmental forcing in the deep past is centred on species richness, neglecting the disproportional impact of common species. Here, we use common and widespread species of planktonic foraminifera in deep-sea sediments to track changes in observed global occupancy (proportion of sampled sites at which a species is present and observed) through the turbulent climatic history of the last 65 Myr. Our approach is sensitive to relative changes in global abundance of the species set and robust to factors that bias richness estimators. Using three independent methods for detecting causality, we show that the observed global occupancy of planktonic foraminifera has been dynamically coupled to past oceanographic changes captured in deep-ocean temperature reconstructions. The causal inference does not imply a direct mechanism, but is consistent with an indirect, time-delayed causal linkage. Given the strong quantitative evidence that a dynamical coupling exists, we hypothesize that mixotrophy (symbiont hosting) may be an ecological factor linking the global abundance of planktonic foraminifera to long-term climate changes via the relative extent of oligotrophic oceans. © 2017 The Authors.

How well does the Continuous Plankton Recorder (CPR) sample zooplankton? A comparison with the Longhurst Hardy Plankton Recorder (LHPR) in the northeast Atlantic

Science.gov (United States)

Richardson, Anthony J.; John, Eurgain H.; Irigoien, Xabier; Harris, Roger P.; Hays, Graeme C.

2004-09-01

The Continuous Plankton Recorder (CPR) survey has collected data on basin-scale zooplankton abundance in the North Atlantic since the 1930s. These data have been used in many studies to elucidate seasonal patterns and long-term change in plankton populations, as well as more recently to validate ecosystem models. There has, however, been relatively little comparison of the data from the CPR with that from other samplers. In this study we compare zooplankton abundance estimated from the CPR in the northeast Atlantic with near-surface samples collected by a Longhurst-Hardy Plankton Recorder (LHPR) at Ocean Weather Station India (59°N, 19°W) between 1971 and 1975. Comparisons were made for six common copepods in the region: Acartia clausi, Calanus finmarchicus, Euchaeta norvegica, Metridia lucens, Oithona sp., and Pleuromamma robusta. Seasonal cycles based on CPR data were similar to those recorded by the LHPR. Differences in absolute abundances were apparent, however, with the CPR underestimating abundances by a factor of between 5 and 40, with the exception of A. clausi. Active avoidance by zooplankton is thought to be responsible. This avoidance is species specific, so that care must be taken describing communities, as the CPR emphasises those species that are preferentially caught, a problem common to many plankton samplers.

Constraining Seasonal and Vertical Distributions of Planktonic Foraminifera for Paleoclimate Reconstruction Since MIS3 at the Axial Seamount, Juan de Fuca Ridge

Science.gov (United States)

Chen, S. L.; Ravelo, A. C.; Clague, D. A.

2015-12-01

The California Current is an upwelling region with dynamic interactions between circulation, biological productivity and ecology. A 77 cm piston push core was taken from the Juan de Fuca Ridge Axial Seamount using a Remotely Operated Vehicle (ROV) (2213m, 45.55º N, 130.08º W), an active submarine volcano ~480 km off Oregon's coast. Five radiocarbon dates indicate that the sediment ranges from 42.6 ka at 77 cm to 17.6 ka at 15 cm, with an average sediment accumulation rate of 2.47 cm/ka from 77-15 cm, and an average rate of 0.85 cm/ka during the postglacial period (the core representing subtropical, subartic, and arctic fauna have been used to constrain changes in vertical and seasonal temperature since Marine Isotope Stage 3 (MIS3). Measurements of δ18O of the upwelling species Globigerina bulloides, the thermocline dwelling species Neogloboquadrina dutertrei, and the warm mixed-layer species Orbulina universa are offset from each other, reflecting vertical and seasonal variation among the planktonic foraminifera. Of the three species, G. bulloides shows the least variation in δ18O, possibly indicating that marked changes in temperature are masking changes in the δ18O of seawater due to global ice volume changes. G. bulloides and O. universa δ18O values are similar in MIS 3 and diverge with time, indicating the development of strong seasonal succession of species, since the last glacial maximum. Bulk nitrogen isotopes and nitrogen flux provide additional constraints on upwelling strength and insight into local biological productivity and nutrient dynamics. Obtaining Mg/Ca data will clarify the δ 18O interpretation except deep in the core where metal-bearing authigenic precipitates affect Mg concentrations. These climatic proxies together provide insight into how global climate change and local seamount volcanism impacts regional productivity in the California Current.

Temporal changes in plankton of the North Sea: community shfits and environmental drivers

NARCIS (Netherlands)

Alvarez-Fernandez, S.; Lindeboom, H.J.; Meesters, H.W.G.

2012-01-01

This paper analyses long-term and seasonal changes in the North Sea plankton community during the period 1970 to 2008. Based on Continuous Plankton Recorder (CPR) data covering 38 yr, major changes in both phytoplankton and zooplankton abundance and community structure were identified. Regime

Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities.

Science.gov (United States)

Ray, Jessica L; Althammer, Julia; Skaar, Katrine S; Simonelli, Paolo; Larsen, Aud; Stoecker, Diane; Sazhin, Andrey; Ijaz, Umer Z; Quince, Christopher; Nejstgaard, Jens C; Frischer, Marc; Pohnert, Georg; Troedsson, Christofer

2016-11-01

In order to characterize copepod feeding in relation to microbial plankton community dynamics, we combined metabarcoding and metabolome analyses during a 22-day seawater mesocosm experiment. Nutrient amendment of mesocosms promoted the development of haptophyte (Phaeocystis pouchetii)- and diatom (Skeletonema marinoi)-dominated plankton communities in mesocosms, in which Calanus sp. copepods were incubated for 24 h in flow-through chambers to allow access to prey particles (<500 μm). Copepods and mesocosm water sampled six times spanning the experiment were analysed using metabarcoding, while intracellular metabolite profiles of mesocosm plankton communities were generated for all experimental days. Taxon-specific metabarcoding ratios (ratio of consumed prey to available prey in the surrounding seawater) revealed diverse and dynamic copepod feeding selection, with positive selection on large diatoms, heterotrophic nanoflagellates and fungi, while smaller phytoplankton, including P. pouchetii, were passively consumed or even negatively selected according to our indicator. Our analysis of the relationship between Calanus grazing ratios and intracellular metabolite profiles indicates the importance of carbohydrates and lipids in plankton succession and copepod-prey interactions. This molecular characterization of Calanus sp. grazing therefore provides new evidence for selective feeding in mixed plankton assemblages and corroborates previous findings that copepod grazing may be coupled to the developmental and metabolic stage of the entire prey community rather than to individual prey abundances. © 2016 John Wiley & Sons Ltd.

Foraging strategy switch of a top marine predator according to seasonal resource differences

Directory of Open Access Journals (Sweden)

Malcolm Daniel O'Toole

2015-04-01

Full Text Available The spatio-temporal variability in marine resources influences the foraging behaviour and success of top marine predators. However, little is known about the links between these animals and ocean productivity, specifically, how plankton density influences their foraging behaviour. Southern elephant seals (Mirounga leonina have two annual at-sea foraging trips: a two month post-breeding foraging trip (Nov – Jan that coincides with elevated summer productivity; and an eight month post-moulting foraging trip (Feb – Oct over winter, when productivity is low. Physical parameters are often used to describe seal habitat, whereas information about important biological parameters is lacking. We used electronic tags deployed on elephant seals during both trips to determine their movement and foraging behaviour. The tags also recorded light, which measured the bio-optical properties of the water column, the bulk of which is presumably influenced by phytoplankton. We investigated the relationship between plankton density and seal foraging behaviour; comparing trends between summer and winter trips. We found a positive relationship between plankton density and foraging behaviour, which did not vary seasonally. We propose that profitable concentrations of seal prey are more likely to coincide with planktonic aggregations, but we also acknowledge that trophic dynamics may shift in response to seasonal trends in productivity. Seal prey (mid-trophic level and plankton (lower-trophic level are expected to overlap in space and time during summer trips when peak phytoplankton blooms occur. In contrast, aggregated patches of lower trophic levels are likely to be more dispersed during winter trips when plankton density is considerably lower and heterogeneous. These results show that southern elephant seals are able to exploit prey resources in different ways throughout the year as demonstrated by the variation observed between seal foraging behaviour and trophic

Seasonality in ocean microbial communities.

Science.gov (United States)

Giovannoni, Stephen J; Vergin, Kevin L

2012-02-10

Ocean warming occurs every year in seasonal cycles that can help us to understand long-term responses of plankton to climate change. Rhythmic seasonal patterns of microbial community turnover are revealed when high-resolution measurements of microbial plankton diversity are applied to samples collected in lengthy time series. Seasonal cycles in microbial plankton are complex, but the expansion of fixed ocean stations monitoring long-term change and the development of automated instrumentation are providing the time-series data needed to understand how these cycles vary across broad geographical scales. By accumulating data and using predictive modeling, we gain insights into changes that will occur as the ocean surface continues to warm and as the extent and duration of ocean stratification increase. These developments will enable marine scientists to predict changes in geochemical cycles mediated by microbial communities and to gauge their broader impacts.

Plankton of Southern Chilean fjords: trends and linkages

Directory of Open Access Journals (Sweden)

Tarcisio Antezana

1999-12-01

Full Text Available The present paper compiles and reviews past and recent results from Magellan and Fuegian fjords for an overview of the planktonic assemblage there. It first examines linkages to local, adjacent and remote environments. The plankton assemblage presents deviations from the biota of the Magellan biogeographic Province, where the occasional presence of Antarctic species is related to oceanographic phenomena at the Polar Front. Complex bathymetric and hydrographic features within the fjords suggest that the plankton is rather isolated. Adaptations and constraints for population survival, and the role of diel migrators and gregarious zooplankters with regard to bentho-pelagic coupling are discussed. Results on seasonal differences in the plankton of the largest and most isolated basin of the Strait of Magellan are compiled. In spring the plankton was dominated by large diatoms suggesting a short food chain where most of the phytoplankton bloom goes to the bottom, to the meroplankton and to a few dominant holoplankters. In summer, the phytoplankton was dominated by pico- and nanophytoplankton suggesting a more complex food web mediated by a bacterial loop. High abundance of holo- and meroplanktonic larvae coincided with spring blooming conditions.

Quantifying the effect of seasonal and vertical habitat tracking on planktonic foraminifera proxies

Directory of Open Access Journals (Sweden)

L. Jonkers

2017-06-01

Full Text Available The composition of planktonic foraminiferal (PF calcite is routinely used to reconstruct climate variability. However, PF ecology leaves a large imprint on the proxy signal: seasonal and vertical habitats of PF species vary spatially, causing variable offsets from annual mean surface conditions recorded by sedimentary assemblages. PF seasonality changes with temperature in a way that minimises the environmental change that individual species experience and it is not unlikely that changes in depth habitat also result from such habitat tracking. While this behaviour could lead to an underestimation of spatial or temporal trends as well as of variability in proxy records, most palaeoceanographic studies are (implicitly based on the assumption of a constant habitat. Up to now, the effect of habitat tracking on foraminifera proxy records has not yet been formally quantified on a global scale. Here we attempt to characterise this effect on the amplitude of environmental change recorded in sedimentary PF using core top δ18O data from six species. We find that the offset from mean annual near-surface δ18O values varies with temperature, with PF δ18O indicating warmer than mean conditions in colder waters (on average by −0.1 ‰ (equivalent to 0.4 °C per °C, thus providing a first-order quantification of the degree of underestimation due to habitat tracking. We use an empirical model to estimate the contribution of seasonality to the observed difference between PF and annual mean δ18O and use the residual Δδ18O to assess trends in calcification depth. Our analysis indicates that given an observation-based model parametrisation calcification depth increases with temperature in all species and sensitivity analysis suggests that a temperature-related seasonal habitat adjustment is essential to explain the observed isotope signal. Habitat tracking can thus lead to a significant reduction in the amplitude of recorded environmental change

Plankton bloom controlled by horizontal stirring

Science.gov (United States)

McKiver, W.; Neufeld, Z.; Scheuring, I.

2009-10-01

Here we show a simple mechanism in which changes in the rate of horizontal stirring by mesoscale ocean eddies can trigger or suppress plankton blooms and can lead to an abrupt change in the average plankton density. We consider a single species phytoplankton model with logistic growth, grazing and a spatially non-uniform carrying capacity. The local dynamics have multiple steady states for some values of the carrying capacity that can lead to localized blooms as fluid moves across the regions with different properties. We show that for this model even small changes in the ratio of biological timescales relative to the flow timescales can greatly enhance or reduce the global plankton productivity. Thus, this may be a possible mechanism in which changes in horizontal mixing can trigger plankton blooms or cause regime shifts in some oceanic regions. Comparison between the spatially distributed model and Lagrangian simulations considering temporal fluctuations along fluid trajectories, demonstrates that small scale transport processes also play an important role in the development of plankton blooms with a significant influence on global biomass.

Influence of plankton mercury dynamics and trophic pathways on mercury concentrations of top predator fish of a mining-impacted reservoir

International Nuclear Information System (INIS)

Stewart, A.R.; Kuwabara, J.S.; Marvin-DiPasquale, M.; Saiki, M.K.; Alpers, C.N.; Krabbenhoft, D.P.

2008-01-01

A study was conducted to document the water quality in the Camp Far West Reservoir (CFWR) located at 300 feet above sea level in the foothills of the Sierra Nevada in northern California. The CFWR is characterized by drawdown in the late summer and fall. It receives acidic, metal-rich drainage seasonally from an inactive gold mine. Water-quality constituents vary considerably by season. Water-quality data for CFWR were used together with data from studies of sediment and biota to develop a conceptual model for mercury methylation and bioaccumulation in the reservoir and the lower Bear River watershed. The study examined the physical and biogeochemical characteristics of the aquatic environment that affect growth dynamics of phytoplankton and the zooplankton communities that depend on them. The uptake affect of methylmercury (MeHg) into the pelagic food web was also investigated by assessing the changes in the quality and quantity of suspended particulate material, zooplankton taxonomy, and MeHg concentrations with seasonal changes. MeHg concentrations in bulk zooplankton increased at high water and were positively correlated with cladoceran biomass and negatively correlated with rotifer biomass. According to stable isotope analysis, MeHg concentrations in the pelagic-based food web were generally higher than in the benthic-based food web. The difference in MeHg bioaccumulation among trophic pathways appears to be set at the base of the food webs. It was concluded that plankton dynamics plays a key role in driving the MeHg content of zooplankton and MeHg bioaccumulation in top predators in pelagic-based food webs. 58 refs., 1 tab., 8 figs

Influence of plankton mercury dynamics and trophic pathways on mercury concentrations of top predator fish of a mining-impacted reservoir

Energy Technology Data Exchange (ETDEWEB)

Stewart, A.R.; Kuwabara, J.S.; Marvin-DiPasquale, M. [United States Geological Survey, Menlo Park, CA (United States); Saiki, M.K. [United States Geological Survey, Western Fisheries Research Center, Dixon, CA (United States); Alpers, C.N. [United States Geological Survey, California Water Science Center, Sacramento, CA (United States); Krabbenhoft, D.P. [United States Geological Survey, Middleton, WI (United States)

2008-11-15

A study was conducted to document the water quality in the Camp Far West Reservoir (CFWR) located at 300 feet above sea level in the foothills of the Sierra Nevada in northern California. The CFWR is characterized by drawdown in the late summer and fall. It receives acidic, metal-rich drainage seasonally from an inactive gold mine. Water-quality constituents vary considerably by season. Water-quality data for CFWR were used together with data from studies of sediment and biota to develop a conceptual model for mercury methylation and bioaccumulation in the reservoir and the lower Bear River watershed. The study examined the physical and biogeochemical characteristics of the aquatic environment that affect growth dynamics of phytoplankton and the zooplankton communities that depend on them. The uptake affect of methylmercury (MeHg) into the pelagic food web was also investigated by assessing the changes in the quality and quantity of suspended particulate material, zooplankton taxonomy, and MeHg concentrations with seasonal changes. MeHg concentrations in bulk zooplankton increased at high water and were positively correlated with cladoceran biomass and negatively correlated with rotifer biomass. According to stable isotope analysis, MeHg concentrations in the pelagic-based food web were generally higher than in the benthic-based food web. The difference in MeHg bioaccumulation among trophic pathways appears to be set at the base of the food webs. It was concluded that plankton dynamics plays a key role in driving the MeHg content of zooplankton and MeHg bioaccumulation in top predators in pelagic-based food webs. 58 refs., 1 tab., 8 figs.

Seasonal Variations in the Composition and Distribution of ...

African Journals Online (AJOL)

The composition and distribution of planktonic fauna (adult form of zooplankton and planktonic juvenile forms of higher animals) within the eastern part of the Lagos Lagoon were investigated in July, 2008 and March, 2009 representing rainy and dry season respectively. Samples of water and planktonic fauna were ...

Mixotrophy in the marine plankton

DEFF Research Database (Denmark)

Stoecker, Diane K.; Hansen, Per Juel; Caron, David

2017-01-01

Mixotrophs are important components of the bacterioplankton, phytoplankton, microzooplankton, and (sometimes) zooplankton in coastal and oceanic waters. Bacterivory among the phytoplankton may be important for alleviating inorganic nutrient stress and may increase primary production in oligotrophic...... waters. Mixotrophic phytoflagellates and dinoflagellates are often dominant components of the plankton during seasonal stratification. Many of the microzooplankton grazers, including ciliates and Rhizaria, are mixotrophic owing to their retention of functional algal organelles or maintenance of algal...

Planktonic food web structure at a coastal time-series site: I. Partitioning of microbial abundances and carbon biomass

Science.gov (United States)

Caron, David A.; Connell, Paige E.; Schaffner, Rebecca A.; Schnetzer, Astrid; Fuhrman, Jed A.; Countway, Peter D.; Kim, Diane Y.

2017-03-01

Biogeochemistry in marine plankton communities is strongly influenced by the activities of microbial species. Understanding the composition and dynamics of these assemblages is essential for modeling emergent community-level processes, yet few studies have examined all of the biological assemblages present in the plankton, and benchmark data of this sort from time-series studies are rare. Abundance and biomass of the entire microbial assemblage and mesozooplankton (>200 μm) were determined vertically, monthly and seasonally over a 3-year period at a coastal time-series station in the San Pedro Basin off the southwestern coast of the USA. All compartments of the planktonic community were enumerated (viruses in the femtoplankton size range [0.02-0.2 μm], bacteria + archaea and cyanobacteria in the picoplankton size range [0.2-2.0 μm], phototrophic and heterotrophic protists in the nanoplanktonic [2-20 μm] and microplanktonic [20-200 μm] size ranges, and mesozooplankton [>200 μm]. Carbon biomass of each category was estimated using standard conversion factors. Plankton abundances varied over seven orders of magnitude across all categories, and total carbon biomass averaged approximately 60 μg C l-1 in surface waters of the 890 m water column over the study period. Bacteria + archaea comprised the single largest component of biomass (>1/3 of the total), with the sum of phototrophic protistan biomass making up a similar proportion. Temporal variability at this subtropical station was not dramatic. Monthly depth-specific and depth-integrated biomass varied 2-fold at the station, while seasonal variances were generally web structure and function at this coastal observatory.

Regime shifts and ecological catastrophes in a model of plankton-oxygen dynamics under the climate change.

Science.gov (United States)

Petrovskii, Sergei; Sekerci, Yadigar; Venturino, Ezio

2017-07-07

It is estimated that more than a half of the total atmospheric oxygen is produced in the oceans due to the photosynthetic activity of phytoplankton. Any significant decrease in the net oxygen production by phytoplankton is therefore likely to result in the depletion of atmospheric oxygen and in a global mass mortality of animals and humans. In its turn, the rate of oxygen production is known to depend on water temperature and hence can be affected by the global warming. We address this problem theoretically by considering a model of a coupled plankton-oxygen dynamics where the rate of oxygen production slowly changes with time to account for the ocean warming. We show that, when the temperature rises sufficiently high, a regime shift happens: the sustainable oxygen production becomes impossible and the system's dynamics leads to fast oxygen depletion and plankton extinction. We also consider a scenario when, after a certain period of increase, the temperature is set on a new higher yet apparently safe value, i.e. before the oxygen depletion disaster happens. We show that in this case the system dynamics may exhibit a long-term quasi-sustainable dynamics that can still result in an ecological disaster (oxygen depletion and mass extinctions) but only after a considerable period of time. Finally, we discuss the early warning signals of the approaching regime shift resulting in the disaster. Copyright © 2017 Elsevier Ltd. All rights reserved.

Covariance among North Sea nutrient and climate drivers: consequences for plankton dynamics.

NARCIS (Netherlands)

McQuatters-Gollop, A.; Vermaat, J.E.

2011-01-01

Regime shift and principal component analysis of a spatially disaggregated database capturing time-series of climatic, nutrient and plankton variables in the North Sea revealed considerable covariance between groups of ecosystem indicators. Plankton and climate time-series span the period 1958-2003,

Precipitation and temperature drive seasonal variation in bioaccumulation of polycyclic aromatic hydrocarbons in the planktonic food webs of a subtropical shallow eutrophic lake in China.

Science.gov (United States)

Tao, Yuqiang; Yu, Jing; Xue, Bin; Yao, Shuchun; Wang, Sumin

2017-04-01

Hydrophobic organic contaminants (HOCs) are toxic and ubiquitous in aquatic environments and pose great risks to aquatic organisms. Bioaccumulation by plankton is the first step for HOCs to enter aquatic food webs. Trophic status is considered to dominate variations in bioaccumulation of HOCs in plankton in temperate and frigid deep oligotrophic waters. However, long-term driving factors for bioaccumulation of HOCs in planktonic food webs of subtropical shallow eutrophic waters have not been well investigated. China has the largest subtropical lake density in the Northern Hemisphere. Due to limited field data, long-term variations in the bioaccumulation of HOCs in these lakes are almost unknown. Here we take Lake Xuanwu as an example to investigate long-term variations in the bioaccumulation, and biomagnification of polycyclic aromatic hydrocarbon (PAHs) in planktonic food webs of subtropical shallow eutrophic lakes in China, and elucidate the driving factors. Our results indicate that temperature rather than nutrients dominates long-term dynamics of planktonic biomass in this lake. Precipitation significantly enhances the concentrations of the PAHs, and total suspended particles, and consequently affects the distribution of the PAHs in the water column. Biomass dilution induced by temperature dominates bioaccumulation of the PAHs by both phytoplankton and zooplankton (copepods and cladocerans). Biomagnification of the PAHs from phytoplankton to zooplankton is positively correlated with temperature. Our study suggests that temperature and precipitation drive long-term variations in the bioaccumulation of the PAHs in the planktonic food webs of this subtropical shallow eutrophic lake. Lake Xuanwu has a similar mean annual temperature, annual precipitation, sunshine duration, and nutrient levels as other subtropical shallow eutrophic lakes in China. This study may also help to understand the bioaccumulation of HOCs in planktonic food webs of other subtropical shallow

Seasonal Trophic Shift of Littoral Consumers in Eutrophic Lake Taihu (China Revealed by a Two-Source Mixing Model

Directory of Open Access Journals (Sweden)

Qiong Zhou

2011-01-01

Full Text Available We evaluated the seasonal variation in the contributions of planktonic and benthic resources to 11 littoral predators in eutrophic Lake Taihu (China from 2004 to 2005. Seasonal fluctuations in consumer σ13C and σ15N were attributed to the combined impacts of temporal variation in isotopic signatures of basal resources and the diet shift of fishes. Based on a two-end-member mixing model, all target consumers relied on energy sources from coupled benthic and planktonic pathways, but the predominant energy source for most species was highly variable across seasons, showing seasonal trophic shift of littoral consumers. Seasonality in energy mobilization of consumers focused on two aspects: (1 the species number of consumers that relied mainly on planktonic carbon showed the lowest values in the fall and the highest during spring/summer, and (2 most consumer species showed seasonal variation in the percentages of planktonic reliance. We concluded that seasonal trophic shifts of fishes and invertebrates were driven by phytoplankton production, but benthic resources were also important seasonally in supporting littoral consumers in Meiliang Bay. Energy mobilization of carnivorous fishes was more subject to the impact of resource availability than omnivorous species.

Planktonic Foraminifera Proxies Calibration Off the NW Iberian Margin: Nutrients Approach

Science.gov (United States)

Salgueiro, E.; Castro, C. G.; Zuniga, D.; Martin, P. A.; Groeneveld, J.; de la Granda, F.; Villaceiros-Robineau, N.; Alonso-Perez, F.; Alberto, A.; Rodrigues, T.; Rufino, M. M.; Abrantes, F. F. G.; Voelker, A. H. L.

2014-12-01

Planktonic foraminifera (PF) shells preserved in marine sediments are a useful tool to reconstruct productivity conditions at different geological timescales. However, the accuracy of these paleoreconstructions depends on the data set and calibration quality. Several calibration works have been defining and improving the use of proxies for productivity and nutrient cycling parameters. Our contribution is centred on a multi-proxy calibration at a regional coastal upwelling system. To minimize the existing uncertainties affecting the use of trace elements and C stable isotopes as productivity proxy in the high productivity upwelling areas, we investigate the content and distribution of Ba/Ca and δ13C in the water column, its transference into the planktonic foraminifera shells, and, how the living planktonic foraminifera Ba/Ca and δ13C signal is related to the same planktonic foraminiferal species preserved in the sediment record. This study is based on a large data set from two stations (RAIA - 75m water depth, and CALIBERIA - 350m water depth) located off the NW Iberian margin (41.5-42.5ºN; 9-10ºW), and includes: i) two year monthly water column data (temperature, salinity, nutrients, chlorophyll a, Ba/Ca, and δ13C-DIC); ii) seasonal Ba/Ca, δ13C in several living PF species at both stations; and iii) Ba/Ca and δ13C in several PF species from a large set of core-top sediment samples in the study region. Additionally, total organic carbon and total alkenones were also measured in the sediment. Our results showed the link between productivity proxies in the surface sediment foraminifera assemblage and the processes regulating the actual phytoplankton dynamics in an upwelling area. The understanding of this relationship has special relevance since it gives fundamental information related to the past oceanic biogeochemistry and/or climate and improves the prevision of future changes against possible climate variability due to anthropogenic forcing.

Size distribution of planktonic autotrophy and microheterotrophy in DeGray Reservoir, Arkansas

International Nuclear Information System (INIS)

Kimmel, B.L.; Groeger, A.W.

1983-01-01

Naturally occurring assemblages of phytoplankton and bacterioplankton were radiolabelled with sodium 14 C-bicarbonate and sodium 3 H-acetate and size fractionated to determine the size structure of planktonic autotrophy and microheterotrophy in DeGray Reservoir, an oligotrophic impoundment of the Caddo River in south-central Arkansas. Size distributions of autotrophy and microheterotrophy were remarkably uniform seasonally, vertically within the water column, and along the longitudinal axis of the reservoir despite significant changes in environmental conditions. Planktonic autotrophy was dominated by small algal cells with usually >50% of the photosynthetic carbon uptake accounted for by organisms 75% of the planktonic microheterotrophy. Longitudinal patterns in autotrophic and microheterotrophic activities associated with >3-μm and >1-μm size fractions, respectively, suggest an uplake to downlake shift from riverine to lacustrine environmental influences within the reservoir. 83 references, 7 figures

GLOBEC NEP Vertical Plankton Tow (VPT) Data, 1997-2001

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — GLOBEC (GLOBal Ocean ECosystems Dynamics) NEP (Northeast Pacific) California Current Program Vertical Plankton Tow (VPT) Data For more information, see...

The trophic role and impact of plankton ciliates in the microbial web structure of a tropical polymictic lake dominated by filamentous cyanobacteria

Directory of Open Access Journals (Sweden)

Alfonso Esquivel

2016-03-01

Full Text Available The recent interest in the plankton structures and dynamics in tropical and subtropical lakes has revealed important trends that set these lakes apart from temperate lakes, and one of the main differences is the enhanced importance of the microbial food web with respect to net plankton. Ciliates are a key component of subtropical and tropical microbial webs because of their role as dominant picoplankton grazers and their ability to channel picoplankton production to the uppermost trophic levels. Plankton ciliates have been found to play a crucial role in the survival of fish larvae in lakes that share several features with Lake Catemaco, a eutrophic tropical Mexican lake. Therefore, the plankton ciliate composition, abundance, and biomass of Lake Catemaco were studied to assess their role in the microbial food web. The data were obtained from surface and bottom water samples collected at eleven points during three surveys in 2011 and an additional survey in 2013, with the surveys covering the local climatic seasons. The most abundant components of the plankton ciliate assemblages were small prostomatids (Urotricha spp., choreotrichs (Rimostrombidium spp., cyclotrichs (Mesodinium and Askenasia, and scuticociliates (Cyclidium, Cinetochilum, Pleuronema, and Uronema. Other important ciliates in terms of abundance and/or biomass were haptorids (Actinobolina, Belonophrya, Monodinium, Paradileptus, and Laginophrya, Halteria, oligotrichs (Limnostrombidium and Pelagostrombidium, Linostomella, Bursaridium, Cyrtolophosis, and Litonotus. The ciliate abundance averaged 57 cells mL-1 and ranged from 14 to 113 cells mL-1. The mean ciliate biomass was 71 µg C L-1 and ranged from 10 to 202 µg C L-1. Differences were not detected in ciliate abundance or biomass between the sampling points or sampling depths (surface to bottom; however, significant differences were observed between seasons for both variables. Nano-sized filamentous cyanobacteria were the most

GLOBEC NEP MOCNESS Plankton (MOC1) Data, 2000-2002

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — GLOBEC (GLOBal Ocean ECosystems Dynamics) NEP (Northeast Pacific) California Current Program MOCNESS Plankton (MOC1) Data The MOCNESS is based on the Tucker Trawl...

Seasonal quantitative dynamics and ecology of pelagic rotifers in an acidified boreal lake

Directory of Open Access Journals (Sweden)

Svein Birger Wærvågen

2017-12-01

Full Text Available Lake Gjerstadvann is a dimictic, oligotrophic, slightly acidified boreal lake in southern Norway (northwest Europe. The planktonic rotifer community of this lake was studied quantitatively during one year in order to investigate the impacts of the local environment and biotic interactions on seasonal succession and habitat selection. Pure suspension feeders (mainly Keratella spp., Conochilus spp., and Kellicottia longispina together with raptorial graspers or specialised feeders (mainly Polyarthra spp. and Collotheca spp. dominated the rotifer community over prolonged periods, whereas carnivorous/omnivorous species (mainly Asplanchna priodonta were extremely uncommon. Low bicarbonate buffering capacity resulted in a distinctive seasonal oscillating pH between 5.0 and 5.6, defining a special acid-transition lake category. The pH values were highest in the productive period during summer, and lowest during ice break-up coinciding with the peak reactive aluminium concentrations of 250-300 mg L-1. As in typical Norwegian boreal perch lakes, the most abundant cladoceran was Bosmina longispina due to perch predation on the genus Daphnia. Rotifer community structure was significantly related to temperature and oxygen (P=0.001 and P=0.022, illustrating the important effects of the seasonal cycle and vertical density stratification. The most significant competition indicator species were B. longispina and Eudiaptomus gracilis (both with P=0.001. A variance partitioning indicated that 14% of the total community composition variance could only be explained by biotic interactions, while 19% of the variance could be attributed to environmental gradients. Of the variance, 23% could not be resolved between biotic interactions and environmental gradients, while a residual of 44% was not explainable by any of the variables. Acid conditions alone cannot account for all the observed changes in the rotifer community of this lake with low humic content, since

Nonbreeding-Season Drivers of Population Dynamics in Seasonal Migrants: Conservation Parallels Across Taxa

Directory of Open Access Journals (Sweden)

Anna M. Calvert

2009-12-01

Full Text Available For seasonal migrants, logistical constraints have often limited conservation efforts to improving survival and reproduction during the breeding season only. Yet, mounting empirical evidence suggests that events occurring throughout the migratory life cycle can critically alter the demography of many migrant species. Herein, we build upon recent syntheses of avian migration research to review the role of non-breeding seasons in determining the population dynamics and fitness of diverse migratory taxa, including salmonid fishes, marine mammals, ungulates, sea turtles, butterflies, and numerous bird groups. We discuss several similarities across these varied migrants: (i non-breeding survivorship tends to be a strong driver of population growth; (ii non-breeding events can affect fitness in subsequent seasons through seasonal interactions at individual- and population-levels; (iii broad-scale climatic influences often alter non-breeding resources and migration timing, and may amplify population impacts through covariation among seasonal vital rates; and (iv changes to both stationary and migratory non-breeding habitats can have important consequences for abundance and population trends. Finally, we draw on these patterns to recommend that future conservation research for seasonal migrants will benefit from: (1 more explicit recognition of the important parallels among taxonomically diverse migratory animals; (2 an expanded research perspective focused on quantification of all seasonal vital rates and their interactions; and (3 the development of detailed population projection models that account for complexity and uncertainty in migrant population dynamics.

Planktonic Subsidies to Surf-Zone and Intertidal Communities

Science.gov (United States)

Morgan, Steven G.; Shanks, Alan L.; MacMahan, Jamie H.; Reniers, Ad J. H. M.; Feddersen, Falk

2018-01-01

Plankton are transported onshore, providing subsidies of food and new recruits to surf-zone and intertidal communities. The transport of plankton to the surf zone is influenced by wind, wave, and tidal forcing, and whether they enter the surf zone depends on alongshore variation in surf-zone hydrodynamics caused by the interaction of breaking waves with coastal morphology. Areas with gently sloping shores and wide surf zones typically have orders-of-magnitude-higher concentrations of plankton in the surf zone and dense larval settlement in intertidal communities because of the presence of bathymetric rip currents, which are absent in areas with steep shores and narrow surf zones. These striking differences in subsidies have profound consequences; areas with greater subsidies support more productive surf-zone communities and possibly more productive rocky intertidal communities. Recognition of the importance of spatial subsidies for rocky community dynamics has recently advanced ecological theory, and incorporating surf-zone hydrodynamics would be an especially fruitful line of investigation.

Seasonal patterns in plankton communities in a pluriannual time series at a coastal Mediterranean site (Gulf of Naples: an attempt to discern recurrences and trends

Directory of Open Access Journals (Sweden)

M. Ribera d'Alcalà

2004-04-01

Full Text Available The annual cycle of plankton was studied over 14 years from 1984 to 2000 at a coastal station in the Gulf of Naples, with the aim of assessing seasonal patterns and interannual trends. Phytoplankton biomass started increasing over the water column in February-early March, and generally achieved peak values in the upper layers in late spring. Another peak was often recorded in autumn. Diatoms and phytoflagellates dominated for the largest part of the year. Ciliates showed their main peaks in phase with phytoplankton and were mainly represented by small (< 30 mm naked choreotrichs. Mesozooplankton increased in March-April, reaching maximum concentrations in summer. Copepods were always the most abundant group, followed by cladocerans in summer. At the interannual scale, a high variability and a decreasing trend were recorded over the sampling period for autotrophic biomass. Mesozooplankton biomass showed a less marked interannual variability. From 1995 onwards, phytoplankton populations increased in cell number but decreased in cell size, with intense blooms of small diatoms and undetermined coccoid species frequently observed in recent years. In spite of those interannual variations, the different phases of the annual cycle and the occurrence of several plankton species were remarkably regular.

Seasonal dynamics of autotrophic and heterotrophic plankton metabolism and P_CO2 in a subarctic Greenland fjord

DEFF Research Database (Denmark)

Sejr, Mikael K.; Krause-Jensen, Dorte; Dalsgaard, Tage

2014-01-01

of POC. The planktonic community was net heterotrophic in the photic zone in September (NCP = −21 ± 45 mmol O2 m−2 d−1) and February (NCP = −17 mmol O2 m−2 d−1) but net autotrophic during a developing spring bloom in May (NCP = 129 ± 102 mmol O2 m−2 d−1). In September, higher temperatures, shorter day......) and in the range of open ocean values, indicating that allochtonous carbon did not stimulate CR. The in the surface water was below atmospheric levels (September average 25.0 ± 0.71 Pa, February 35.4 ± 0.40 Pa, and May 19.8 ± 1.21 Pa), rendering the ecosystem a sink of atmospheric CO2. NCP was identified...

Ecology of planktonic foraminifera and their symbiotic algae

International Nuclear Information System (INIS)

Gastrich, M.D.

1986-01-01

Two types of symbiotic algae occurred abundantly and persistently in the cytoplasm of several species of planktonic Foraminifera over a ten year period in different tropical and subtropical areas of the North Atlantic Ocean. These planktonic Foraminifera host species consistently harbored either dinoflagellates or a newly described minute coccoid algal type. There appeared to be a specific host-symbiont relationship in these species regardless of year, season or geographic locality. The larger ovoid dinoflagellates (Pyrrhophycophyta) occur in the spinose species Globigerinoides ruber, Globigerinoides sacculifer, G. conglobatus and Orbulina universa. The smaller alga, from 1.5 to 3.5 um in diameter, occurs in one spinose species Globigerinella aequilateralis and also in the non-spinose species Globigerinita glutinata, Globoquadrina dutertrei, Globorotalia menardii, Globorotalia cristata, Globorotalia inflata, Candeina nitida, in various juvenile specimens and at all seasons except the winter months in Pulleniatina obliquiloculata and Globorotalial hirsuta. Controlled laboratory studies indicated a significant C incorporation into the host cytoplasm and inorganic calcium carbonate test of Globigerinoides ruber. During incubation for up to two hours, the 14 C uptake into the cytoplasm and test in the light was significantly greater than uptake in the dark by living specimens or by dead foraminifers. There appears to be light-enhanced uptake of 14 C into the test with dinoflagellate photosynthesis contributing to host calcification. In culture, symbiotic algae were observed to survive for the duration of the lifespan of their hosts

Seasonal dynamics and life histories of pelagic cladocerans (Crustacea; Cladocera in an acid boreal lake

Directory of Open Access Journals (Sweden)

Jens Petter NILSSEN

2011-02-01

Full Text Available In the surveyed anthropogenic acidified Lake Gjerstadvann with pH ≈ 5.2 situated in southern Norway, spatial and temporal distribution of three characteristic planktonic cladocerans inhabiting acidified boreal biotopes, Bosmina longispina, Holopedium gibberum, and Diaphanosoma brachyurum, were studied over a period of one year. The major pelagic predator was Eurasian perch, Perca fluviatilis. The local perch probably balanced the cladoceran community and facilitated co-existence of all three species of cladocerans by removing significant portions of B. longispina, which could also be the case in similar types of boreal lakes. Invertebrate predators such as the dipteran larvae Chaoborus flavicans and carnivorous copepods did not seem to influence the cladoceran community. B. longispina was perennial, whereas both H. gibberum and D. brachyurum were recorded only during the ice-free period. The life cycle of these free-living pelagic species ranged from 2-3 in D. brachyurum, 3 in H. gibberum to approximately 6 annual generations in B. longispina. Wintering took place as resting eggs in D. brachyurum and H. gibberum, while B. longispina produced resting eggs in addition to an active planktonic stay. The warm water tolerant D. brachyurum was mainly distributed above the thermocline, whereas H. gibberum also inhabited deeper strata, and B. longispina most vertical strata of the lake. Maximum seasonal clutch volume of B. longispina coincided in time with peak in food abundance and may be a useful parameter to identify planktonic food availability in such lakes. Knowledge of the autecology and life history of species is fundamental for understanding ecosystem stress, such as anthropogenic acidification and recovery through liming or by natural causes. Seasonal depth isoplots combined with life history studies of commonly co-occurring cladoceran species from natural acid and anthropogenic acidified lakes on the Northern Hemisphere seem to be uncommon

Bioprospecting Marine Plankton

Directory of Open Access Journals (Sweden)

Chris Bowler

2013-11-01

Full Text Available The ocean dominates the surface of our planet and plays a major role in regulating the biosphere. For example, the microscopic photosynthetic organisms living within provide 50% of the oxygen we breathe, and much of our food and mineral resources are extracted from the ocean. In a time of ecological crisis and major changes in our society, it is essential to turn our attention towards the sea to find additional solutions for a sustainable future. Remarkably, while we are overexploiting many marine resources, particularly the fisheries, the planktonic compartment composed of zooplankton, phytoplankton, bacteria and viruses, represents 95% of marine biomass and yet the extent of its diversity remains largely unknown and underexploited. Consequently, the potential of plankton as a bioresource for humanity is largely untapped. Due to their diverse evolutionary backgrounds, planktonic organisms offer immense opportunities: new resources for medicine, cosmetics and food, renewable energy, and long-term solutions to mitigate climate change. Research programs aiming to exploit culture collections of marine micro-organisms as well as to prospect the huge resources of marine planktonic biodiversity in the oceans are now underway, and several bioactive extracts and purified compounds have already been identified. This review will survey and assess the current state-of-the-art and will propose methodologies to better exploit the potential of marine plankton for drug discovery and for dermocosmetics.

Progress Towards a Global Understanding of Plankton Dynamics: The Global Alliance of CPR Surveys (GACS)

Science.gov (United States)

Batten, S.; Richardson, A.; Melrose, C.; Muxagata, E.; Hosie, G.; Verheye, H.; Hall, J.; Edwards, M.; Koubbi, P.; Abu-Alhaija, R.; Chiba, S.; Wilson, W.; Nagappa, R.; Takahashi, K.

2016-02-01

The Continuous Plankton Recorder (CPR) was first used in 1931 to routinely sample plankton and its continued deployment now sustains the longest-running, and spatially most extensive marine biological sampling programme in the world. Towed behind, for the most part commercial, ships it collects plankton samples from the surface waters that are subsequently analysed to provide taxonomically-resolved abundance data on a broad range of planktonic organisms from the size of coccolithophores to euphausiids. Plankton appear to integrate changes in the physical environment and by underpinning most marine food-webs, pass on this variability to higher trophic levels which have societal value. CPRs are deployed increasingly around the globe in discrete regional surveys that until recently interacted in an informal way. In 2011 the Global Alliance of CPR Surveys (GACS) was launched to bring these surveys together to collaborate more productively and address issues such as: methodological standardization, data integration, capacity building, and data analysis. Early products include a combined global database and regularly-released global marine ecological status reports. There are, of course, limitations to the exploitation of CPR data as well as the current geographic coverage. A current focus of GACS is integration of the data with models to meaningfully extrapolate across time and space. In this way the output could be used to provide more robust synoptic representations of key plankton variables. Recent years have also seen the CPR used as a platform in itself with the inclusion of additional sensors and water samplers that can sample the microplankton. The archive of samples has already been used for some molecular investigations and curation of samples is maintained for future studies. Thus the CPR is a key element of any regional to global ocean observing system of biodiversity.

Population and evolutionary dynamics in spatially structured seasonally varying environments.

Science.gov (United States)

Reid, Jane M; Travis, Justin M J; Daunt, Francis; Burthe, Sarah J; Wanless, Sarah; Dytham, Calvin

2018-03-25

Increasingly imperative objectives in ecology are to understand and forecast population dynamic and evolutionary responses to seasonal environmental variation and change. Such population and evolutionary dynamics result from immediate and lagged responses of all key life-history traits, and resulting demographic rates that affect population growth rate, to seasonal environmental conditions and population density. However, existing population dynamic and eco-evolutionary theory and models have not yet fully encompassed within-individual and among-individual variation, covariation, structure and heterogeneity, and ongoing evolution, in a critical life-history trait that allows individuals to respond to seasonal environmental conditions: seasonal migration. Meanwhile, empirical studies aided by new animal-tracking technologies are increasingly demonstrating substantial within-population variation in the occurrence and form of migration versus year-round residence, generating diverse forms of 'partial migration' spanning diverse species, habitats and spatial scales. Such partially migratory systems form a continuum between the extreme scenarios of full migration and full year-round residence, and are commonplace in nature. Here, we first review basic scenarios of partial migration and associated models designed to identify conditions that facilitate the maintenance of migratory polymorphism. We highlight that such models have been fundamental to the development of partial migration theory, but are spatially and demographically simplistic compared to the rich bodies of population dynamic theory and models that consider spatially structured populations with dispersal but no migration, or consider populations experiencing strong seasonality and full obligate migration. Second, to provide an overarching conceptual framework for spatio-temporal population dynamics, we define a 'partially migratory meta-population' system as a spatially structured set of locations that can

Influence of plankton metabolism and mixing depth on CO2 dynamics in an Amazon floodplain lake.

Science.gov (United States)

Amaral, João Henrique F; Borges, Alberto V; Melack, John M; Sarmento, Hugo; Barbosa, Pedro M; Kasper, Daniele; de Melo, Michaela L; De Fex-Wolf, Daniela; da Silva, Jonismar S; Forsberg, Bruce R

2018-07-15

We investigated plankton metabolism and its influence on carbon dioxide (CO 2 ) dynamics in a central Amazon floodplain lake (Janauacá, 3°23' S, 60°18' W) from September 2015 to May 2016, including a period with exceptional drought. We made diel measurements of CO 2 emissions to the atmosphere with floating chambers and depth profiles of temperature and CO 2 partial pressure (pCO 2 ) at two sites with differing wind exposure and proximity to vegetated habitats. Dissolved oxygen (DO) concentrations were monitored continuously during day and night in clear and dark chambers with autonomous optical sensors to evaluate plankton metabolism. Overnight community respiration (CR), and gross primary production (GPP) rates were higher in clear chambers and positively correlated with chlorophyll-a (Chl-a). CO 2 air-water fluxes varied over 24-h periods with changes in thermal structure and metabolism. Most net daily CO 2 fluxes during low water and mid-rising water at the wind exposed site were into the lake as a result of high rates of photosynthesis. All other measurements indicated net daily release to the atmosphere. Average GPP rates (6.8gCm -2 d -1 ) were high compared with other studies in Amazon floodplain lakes. The growth of herbaceous plants on exposed sediment during an exceptional drought led to large carbon inputs when these areas were flooded, enhancing CR, pCO 2 , and CO 2 fluxes. During the period when the submerged herbaceous vegetation decayed phytoplankton abundance increased and photosynthetic uptake of CO 2 occurred. While planktonic metabolism was often autotrophic (GPP:CR>1), CO 2 out-gassing occurred during most periods investigated indicating other inputs of carbon such as sediments or soils and wetland plants. Copyright © 2018 Elsevier B.V. All rights reserved.

Landscape seasons and air mass dynamics in Latvia

International Nuclear Information System (INIS)

Krauklis, A.; Draveniece, A.

2004-01-01

Latvia is located in the middle of an area where the boreal and nemoral zones and the regions of oceanic and continental climate meet, and it was studied as a model territory of the most typical variation of boreo-nemoral ecotone. The subject of this study was seasonal dynamics of the state of landscapes and diachronous links between seasons. It was found that landscapes undergo 12 seasonal states or seasons during the annual cycle of insulation and air mass occurrence. Each season may be distinguished by a definite amount of solar radiation, distinctive state of heat and water balance, phenological state of vegetation, and a distinctive occurrence of different air mass types and their particular 'association'. During each season these variables show a particular combination of numerical values and a distinctive landscape pattern

San Francisco Bay nutrients and plankton dynamics as simulated by a coupled hydrodynamic-ecosystem model

Science.gov (United States)

Liu, Qianqian; Chai, Fei; Dugdale, Richard; Chao, Yi; Xue, Huijie; Rao, Shivanesh; Wilkerson, Frances; Farrara, John; Zhang, Hongchun; Wang, Zhengui; Zhang, Yinglong

2018-06-01

An open source coupled physical-biogeochemical model is developed for San Francisco Bay (SFB) to study nutrient cycling and plankton dynamics as well as to assist ecosystem based management and risk assessment. The biogeochemical model in this study is based on the Carbon, Silicate and Nitrogen Ecosystem (CoSiNE) model, and coupled to the unstructured grid, Semi-Implicit Cross-scale Hydroscience Integrated System Model (SCHISM). The SCHISM-CoSiNE model reproduces the spatial and temporal variability in nutrients and plankton biomass, and its physical and biogeochemical performance is successfully tested using comparisons with shipboard and fixed station observations. The biogeochemical characteristics of the SFB during wet and dry years are investigated by changing the input of the major rivers. River discharges from the Sacramento and San Joaquin Rivers affect the phytoplankton biomass in North SFB through both advection and dilution of nutrient (including ammonium, NH4) concentrations in the river. The reduction in residence time caused by increased inflows can result in decreased biomass accumulation, while the corresponding reduction in NH4 concentration favors the growth of biomass. In addition, the model is used to make a series of sensitivity experiments to examine the response of SFB to changes in 1) nutrient loading from rivers and wastewater treatment plants (WWTPs), 2) a parameter (ψ) defining NH4 inhibition of nitrate (NO3) uptake by phytoplankton, 3) bottom grazing and 4) suspended sediment concentration. The model results show that changes in NH4 input from rivers or WWTPs affect the likelihood of phytoplankton blooms via NH4 inhibition and that the choice of ψ is critical. Bottom grazing simulated here as increased plankton mortality demonstrates the potential for bivalve reduction of chlorophyll biomass and the need to include bivalve grazing in future models. Furthermore, the model demonstrates the need to include sediments and their contribution

Plankton community structure and connectivity in the Kimberley-Browse region of NW Australia

Science.gov (United States)

McKinnon, A. D.; Duggan, S.; Holliday, D.; Brinkman, R.

2015-02-01

We describe the zooplankton and ichthyoplankton communities of coastal waters of the Kimberley coast (North West Australia), sampled in macrotidal Camden Sound during both the wet and dry seasons of 2011, and compare these to six other Kimberley embayments during the wet season of 2013. Zooplankton abundance in Camden Sound was 7038 ± 3913 SD ind. m-3 in the wet season and 1892 ± 708 SD ind. m-3 in the dry season, with copepods accounting for 85% by number. In all, 78 species of copepods were recorded, with the families Paracalanidae and Oithonidae dominant. In Camden Sound, 48 families of larval fish occurred, with ichthyoplankton more abundant in the wet season than the dry season (1.16 ± 0.2 ind. m-3 cf 0.76 ± 0.2 ind. m-3). Larval gobiids (Subfamily Gobiinae) were most abundant, with other common families associated with either pelagic or soft-bottom habitats as adults. Multivariate analyses of both copepod and ichthyoplankton communities demonstrated strong seasonal contrasts, although an along-shelf gradient in copepod community composition was apparent along the embayments sampled in 2013. There was little spatial variation in plankton communities within Camden Sound as a result of the large tidal range (up to 11.7 m, with 2.5 m-1 velocities), although gradients in abundance and composition on cross-shelf transects occurred in the more northern embayments that had a lower tidal range, such as Napier Broome Bay. Copepod communities of the Kimberley-Browse region were placed in regional perspective by multivariate analyses of similar data collected in the eastern Indian Ocean at Scott Reef, in the Arafura Sea and on the southern North West (NW) shelf. The plankton communities of the NW shelf form a series of along-shore metacommunities linked by advection, with weaker cross-shelf connectivity. The presence of the larvae of mesopelagic fishes of the family Myctophidae in coastal waters confirms seasonal cross-shelf connectivity.

Seasonality in cholera dynamics : a rainfall-driven model explains the wide range of patterns of an infectious disease in endemic areas

Science.gov (United States)

Baracchini, Theo; Pascual, Mercedes; King, Aaron A.; Bouma, Menno J.; Bertuzzo, Enrico; Rinaldo, Andrea

2015-04-01

An explanation for the spatial variability of seasonal cholera patterns has remained an unresolved problem in tropical medicine te{pascual_2002}. Previous studies addressing the role of climate drivers in disease dynamics have focused on interannual variability and modelled seasonality as given te{king_nature}. Explanations for seasonality have relied on complex environmental interactions that vary with spatial location (involving regional hydrological models te{bertuzzo_2012}, river discharge, sea surface temperature, and plankton blooms). Thus, no simple and unified theory based on local climate variables has been formulated te{emch_2008}, leaving our understanding of seasonal variations of cholera outbreaks in different regions of the world incomplete. Through the analysis of a unique historical dataset containing 50 years of monthly meteorological, demographic and epidemiological records, we propose a mechanistic, SIR-based stochastic model for the population dynamics of cholera driven by local rainfall and temperature that is able to capture the full range of seasonal patterns in this large estuarine region, which encompasses the variety of patterns worldwide. Parameter inference was implemented via new statistical methods that allow the computation of maximum-likelihood estimates for partially observed Markov processes through sequential Monte-Carlo te{ionides_2011}. Such a model may provide a unprecedented opportunity to gain insights on the conditions and factors responsible for endemicity around the globe, and therefore, to also revise our understanding of the ecology of Vibrio cholerae. Results indicate that the hydrological regime is a decisive driver determining the seasonal dynamics of cholera. It was found that rainfall and longer water residence times tend to buffer the propagation of the disease in wet regions due to a dilution effect, while also enhancing cholera incidence in dry regions. This indicates that overall water levels matter and appear

Origin of marine planktonic cyanobacteria.

Science.gov (United States)

Sánchez-Baracaldo, Patricia

2015-12-01

Marine planktonic cyanobacteria contributed to the widespread oxygenation of the oceans towards the end of the Pre-Cambrian and their evolutionary origin represents a key transition in the geochemical evolution of the Earth surface. Little is known, however, about the evolutionary events that led to the appearance of marine planktonic cyanobacteria. I present here phylogenomic (135 proteins and two ribosomal RNAs), Bayesian relaxed molecular clock (18 proteins, SSU and LSU) and Bayesian stochastic character mapping analyses from 131 cyanobacteria genomes with the aim to unravel key evolutionary steps involved in the origin of marine planktonic cyanobacteria. While filamentous cell types evolved early on at around 2,600-2,300 Mya and likely dominated microbial mats in benthic environments for most of the Proterozoic (2,500-542 Mya), marine planktonic cyanobacteria evolved towards the end of the Proterozoic and early Phanerozoic. Crown groups of modern terrestrial and/or benthic coastal cyanobacteria appeared during the late Paleoproterozoic to early Mesoproterozoic. Decrease in cell diameter and loss of filamentous forms contributed to the evolution of unicellular planktonic lineages during the middle of the Mesoproterozoic (1,600-1,000 Mya) in freshwater environments. This study shows that marine planktonic cyanobacteria evolved from benthic marine and some diverged from freshwater ancestors during the Neoproterozoic (1,000-542 Mya).

Iron fertilization and the structure of planktonic communities in high nutrient regions of the Southern Ocean

Science.gov (United States)

Quéguiner, Bernard

2013-06-01

In this review article, plankton community structure observations are analyzed both for artificial iron fertilization experiments and also for experiments dedicated to the study of naturally iron-fertilized systems in the Atlantic, Indian and Pacific sectors of the Southern Ocean in the POOZ (Permanently Open Ocean Zone) and the PFZ (Polar Frontal Zone). Observations made in natural systems are combined with those from artificially perturbed systems, in order to evaluate the seasonal evolution of pelagic communities, taking into account controlling factors related to the life cycles and the ecophysiology of dominant organisms. The analysis considers several types of planktonic communities, including both autotrophs and heterotrophs. These communities are spatially segregated owing to different life strategies. A conceptual general scheme is proposed to account for these observations and their variability, regardless of experiment type. Diatoms can be separated into 2 groups: Group 1 has slightly silicified fast growing cells that are homogeneously distributed in the surface mixed layer, and Group 2 has strongly silicified slowly growing cells within discrete layers. During the growth season, Group 1 diatoms show a typical seasonal succession of dominant species, within time windows of development that are conditioned by physical factors (light and temperature) as well as endogenous specific rhythms (internal clock), and biomass accumulation is controlled by the availability of nutrients. Group 1 diatoms are not directly grazed by mesozooplankton which is fed by protozooplankton, linking the microbial food web to higher trophic levels. Instead, successive dominant species of Group 1 are degraded via bacterial activity at the end of their growth season. Organic detritus fragments feed protozooplankton and mesozooplankton. The effective silicon pump leads to the progressive disappearance of silicic acid in surface waters. In contrast, Group 2 is resistant to grazing

Dynamical characteristics of the seasonal circulations over the Korea peninsula

International Nuclear Information System (INIS)

1989-10-01

This paper reports dynamical characteristics of the seasonal circulations over the Korean peninsula. It consists of summary, research method, result, consideration and conclusion. It introduces the method of research ; characteristics of circulation over seasonal wind in Asia, characteristic of upper jet stream related cold wave and monsoon in East Asia and dynamics of pulsation and maintain of high atmospheric pressure in siberia in winter. It was reported by Korea science foundation in 1989.

Shifts between gelatinous and crustacean plankton in a coastal upwelling region

OpenAIRE

Bode, Antonio; Álvarez-Ossorio, Maria Teresa; Miranda, Ana; Ruiz-Villarreal, Manuel

2013-01-01

proyectos RADIALES (IEO) y EURO-BASIN (Ref. 264933, 7FP) Variability in the dominance of copepods vs. gelatinous plankton was analysed using monthly time-series covering the last 55 years and related to changes in climatic, oceanographic, and fishery conditions in the upwelling region of Galicia (NW Spain). Seasonality was generally the main component of variability in all groups, both along the coast and in the nearby ocean, but no common long-term trend was found. Coastal copepo...

Reservoir stratification affects methylmercury levels in river water, plankton, and fish downstream from Balbina hydroelectric dam, Amazonas, Brazil.

Science.gov (United States)

Kasper, Daniele; Forsberg, Bruce R; Amaral, João H F; Leitão, Rafael P; Py-Daniel, Sarah S; Bastos, Wanderley R; Malm, Olaf

2014-01-21

The river downstream from a dam can be more contaminated by mercury than the reservoir itself. However, it is not clear how far the contamination occurs downstream. We investigated the seasonal variation of methylmercury levels in the Balbina reservoir and how they correlated with the levels encountered downstream from the dam. Water, plankton, and fishes were collected upstream and at sites between 0.5 and 250 km downstream from the dam during four expeditions in 2011 and 2012. Variations in thermal stratification of the reservoir influenced the methylmercury levels in the reservoir and in the river downstream. Uniform depth distributions of methylmercury and oxygen encountered in the poorly stratified reservoir during the rainy season collections coincided with uniformly low methylmercury levels along the river downstream from the dam. During dry season collections, the reservoir was strongly stratified, and anoxic hypolimnion water with high methylmercury levels was exported downstream. Methylmercury levels declined gradually to 200 km downstream. In general, the methylmercury levels in plankton and fishes downstream from the dam were higher than those upstream. Higher methylmercury levels observed 200-250 km downstream from the dam during flooding season campaigns may reflect the greater inflow from tributaries and flooding of natural wetlands that occurred at this time.

Control of plankton seasonal succession by adaptive grazing

DEFF Research Database (Denmark)

Mariani, Patrizio; Andersen, Ken Haste; Visser, Andre

2013-01-01

The ecological succession of phytoplankton communities in temperate seas is characterized by the dominance of nonmotile diatoms during spring and motile flagellates during summer, a pattern often linked to the seasonal variation in the physical environment and nutrient availability. We focus...

A Theoretical Approach to Understanding Population Dynamics with Seasonal Developmental Durations

Science.gov (United States)

Lou, Yijun; Zhao, Xiao-Qiang

2017-04-01

There is a growing body of biological investigations to understand impacts of seasonally changing environmental conditions on population dynamics in various research fields such as single population growth and disease transmission. On the other side, understanding the population dynamics subject to seasonally changing weather conditions plays a fundamental role in predicting the trends of population patterns and disease transmission risks under the scenarios of climate change. With the host-macroparasite interaction as a motivating example, we propose a synthesized approach for investigating the population dynamics subject to seasonal environmental variations from theoretical point of view, where the model development, basic reproduction ratio formulation and computation, and rigorous mathematical analysis are involved. The resultant model with periodic delay presents a novel term related to the rate of change of the developmental duration, bringing new challenges to dynamics analysis. By investigating a periodic semiflow on a suitably chosen phase space, the global dynamics of a threshold type is established: all solutions either go to zero when basic reproduction ratio is less than one, or stabilize at a positive periodic state when the reproduction ratio is greater than one. The synthesized approach developed here is applicable to broader contexts of investigating biological systems with seasonal developmental durations.

Can nearby eutrophic reservoirs sustain a differentiated biodiversity of planktonic microcrustaceans in a tropical semiarid basin?

Science.gov (United States)

Diniz, Leidiane P; Melo-Júnior, Mauro DE

2017-01-01

This paper aims to compare alpha and beta diversities of planktonic microcrustaceans from three reservoirs located nearby in a tropical semiarid basin. Our hypothesis was that alpha and beta diversities of the community are different, although the ecosystems are located close to each other. We carried out two sampling campaigns: dry and rainy seasons. The sampling of microcrustaceans and environmental variables (dissolved oxygen, chlorophyll a and nutrient) was performed at twelve stations and were distributed throughout the three zones (river, transition, and lacustrine), using a plankton net (45 µm). The reservoirs showed different uses and types of nitrogen predominance: Cachoeira (supply/nitrate), Borborema (sewage/ammonia) and Saco (aquaculture/ammonia). Seventeen species were recorded whose richness was assessed as particularly specific to each one of the studied reservoirs. Seasonally, both reservoirs with high anthropogenic alteration showed greater richness in the dry season. The three reservoirs located in a same basin showed different richness and composition, but the diversity did not differ between the zones of the reservoirs. Although communities are close to each other, their composition and richness were found to be distinct for each reservoir. This may be in response to the peculiar particularities, such as nitrogen sources and the different uses.

Can nearby eutrophic reservoirs sustain a differentiated biodiversity of planktonic microcrustaceans in a tropical semiarid basin?

Directory of Open Access Journals (Sweden)

LEIDIANE P. DINIZ

Full Text Available ABSTRACT This paper aims to compare alpha and beta diversities of planktonic microcrustaceans from three reservoirs located nearby in a tropical semiarid basin. Our hypothesis was that alpha and beta diversities of the community are different, although the ecosystems are located close to each other. We carried out two sampling campaigns: dry and rainy seasons. The sampling of microcrustaceans and environmental variables (dissolved oxygen, chlorophyll a and nutrient was performed at twelve stations and were distributed throughout the three zones (river, transition, and lacustrine, using a plankton net (45 µm. The reservoirs showed different uses and types of nitrogen predominance: Cachoeira (supply/nitrate, Borborema (sewage/ammonia and Saco (aquaculture/ammonia. Seventeen species were recorded whose richness was assessed as particularly specific to each one of the studied reservoirs. Seasonally, both reservoirs with high anthropogenic alteration showed greater richness in the dry season. The three reservoirs located in a same basin showed different richness and composition, but the diversity did not differ between the zones of the reservoirs. Although communities are close to each other, their composition and richness were found to be distinct for each reservoir. This may be in response to the peculiar particularities, such as nitrogen sources and the different uses.

Toxicity of waters from the Rochester Embayment Area of Concern to the plankton species Pseudokirchneriella subcapitata and Ceriodaphnia dubia

Science.gov (United States)

Baldigo, Barry P.; Duffy, Brian T.; Smith, Alexander J.; George, Scott D.

2016-01-01

The lower Genesee River and Rochester Embayment of Lake Ontario are a designated Area of Concern (AOC) under the binational Great Lakes Water Quality Agreement. The “degradation of phytoplankton and zooplankton populations” or plankton Beneficial Use Impairment (BUI) was classified as unknown and in need of further assessment in this AOC because water quality data suggested plankton communities could be effected and community data were either unavailable or indicated impacts. The plankton BUI may now be obsolete because local contaminant sources have been largely eliminated. The present study was conducted between July 2013 and August 2014 to assess the BUI-removal criteria: “AOC plankton bioassays confirm that toxicity in ambient waters (i.e., no growth inhibition) is not significantly higher than comparable non-AOC controls”. Acute and chronic toxicity of waters from 13 sites were quantified seasonally using standardized bioassays with the green alga Pseudokirchneriella subcapitata and water flea Ceriodaphnia dubia to test the hypothesis that toxicity of waters from AOC sites was not higher than that of waters from comparable non-AOC reference sites. Survival and reproduction of C. dubia did not differ significantly between site types, systems, or months. The growth of P. subcapitata did not differ between site types, but differed among systems and months. All results indicate that waters from AOC sites were no more toxic to both plankton species than waters from reference sites. Assuming test species represent natural plankton assemblages, water quality should not negatively affect survival and growth of resident plankton populations in the Rochester Embayment AOC.

Seasonal dynamics of water use efficiency of typical forest and grassland ecosystems in China

CERN Document Server

Zhu, Xianjin; Wang, Qiufeng; Hu, Zhongmin; Han, Shijie; Yan, Junhua; Wang, Yanfen; Zhao, Liang

2014-01-01

We selected four sites of ChinaFLUX representing four major ecosystem types in China-Changbaishan temperate broad-leaved Korean pine mixed forest (CBS), Dinghushan subtropical evergreen broadleaved forest (DHS), Inner Mongolia temperate steppe (NM), and Haibei alpine shrub-meadow (HBGC)-to study the seasonal dynamics of ecosystem water use efficiency (WUE = GPP/ET, where GPP is gross primary productivity and ET is evapotranspiration) and factors affecting it. Our seasonal dynamics results indicated single-peak variation of WUE in CBS, NM, and HBGC, which were affected by air temperature (Ta) and leaf area index (LAI), through their effects on the partitioning of evapotranspiration (ET) into transpiration (T) (i.e., T/ET). In DHS, WUE was higher at the beginning and the end of the year, and minimum in summer. Ta and soil water content affected the seasonal dynamics of WUE through their effects on GPP/T. Our results indicate that seasonal dynamics of WUE were different because factors affecting the seasonal dyn...

A resource-based game theoretical approach for the paradox of the plankton

Directory of Open Access Journals (Sweden)

Weini Huang

2016-08-01

Full Text Available The maintenance of species diversity is a central focus in ecology. It is not rare to observe more species than the number of limiting resources, especially in plankton communities. However, such high species diversity is hard to achieve in theory under the competitive exclusion principles, known as the plankton paradox. Previous studies often focus on the coexistence of predefined species and ignore the fact that species can evolve. We model multi-resource competitions using evolutionary games, where the number of species fluctuates under extinction and the appearance of new species. The interspecific and intraspecific competitions are captured by a dynamical payoff matrix, which has a size of the number of species. The competition strength (payoff entries is obtained from comparing the capability of species in consuming resources, which can change over time. This allows for the robust coexistence of a large number of species, providing a possible solution to the plankton paradox.

A resource-based game theoretical approach for the paradox of the plankton.

Science.gov (United States)

Huang, Weini; de Araujo Campos, Paulo Roberto; Moraes de Oliveira, Viviane; Fagundes Ferrreira, Fernando

2016-01-01

The maintenance of species diversity is a central focus in ecology. It is not rare to observe more species than the number of limiting resources, especially in plankton communities. However, such high species diversity is hard to achieve in theory under the competitive exclusion principles, known as the plankton paradox. Previous studies often focus on the coexistence of predefined species and ignore the fact that species can evolve. We model multi-resource competitions using evolutionary games, where the number of species fluctuates under extinction and the appearance of new species. The interspecific and intraspecific competitions are captured by a dynamical payoff matrix, which has a size of the number of species. The competition strength (payoff entries) is obtained from comparing the capability of species in consuming resources, which can change over time. This allows for the robust coexistence of a large number of species, providing a possible solution to the plankton paradox.

Dynamic complexities in a seasonal prevention epidemic model with birth pulses

International Nuclear Information System (INIS)

Gao Shujing; Chen Lansun; Sun Lihua

2005-01-01

In most of population dynamics, increases in population due to birth are assumed to be time-dependent, but many species reproduce only during a single period of the year. In this paper, we propose an epidemic model with density-dependent birth pulses and seasonal prevention. Using the discrete dynamical system determined by stroboscopic map, we obtain the local or global stability, numerical simulation shows there is a characteristic sequence of bifurcations, leading to chaotic dynamics, which implies that the dynamical behaviors of the epidemic model with birth pulses and seasonal prevention are very complex, including small amplitude oscillations, large-amplitude multi-annual cycles and chaos. This suggests that birth pulse, in effect, provides a natural period or cyclicity that may lead a period-doubling route to chaos

Wet Season Spatial Occurrence Of Phytoplankton and Zooplankton

African Journals Online (AJOL)

Administrator

were due to high freshwater inflow from adjoining waterways and reduced tidal incursion from the sea. ... Information dealing with the plankton species of the Lagos lagoon and its environs is ... short season of dry, dusty North-East Trade winds are experienced sometimes between ...... In: Freshwater. Algae of North America.

Effects of climate change on bioaccumulation and biomagnification of polycyclic aromatic hydrocarbons in the planktonic food web of a subtropical shallow eutrophic lake in China.

Science.gov (United States)

Tao, Yuqiang; Xue, Bin; Lei, Guoliang; Liu, Fei; Wang, Zhen

2017-04-01

To date effects of climate change on bioaccumulation and biomagnification of chemical pollutants in planktonic food webs have rarely been studied. Recruitments of plankton have shifted earlier due to global warming. Global warming and precipitation patterns are projected to shift seasonally. Whether and how the shifts in plankton phenology induced by climate change will impact bioaccumulation and biomagnification of chemical pollutants, and how they will respond to climate change are largely unknown. Here, we combine data analysis of the past seven decades, high temporal resolution monitoring and model development to test this hypothesis with nine polycyclic aromatic hydrocarbons (PAHs) in the planktonic food web of a subtropical shallow eutrophic lake in China. We find biphasic correlations between both bioconcentration factors and bioaccumulation factors of the PAHs and the mean temperature, which depend on the recruitment temperatures of cyanobacteria, and copepods and cladocerans. The positive correlations between bioconcentration factors, bioaccumulation factors and the mean temperature will be observed less than approximately 13-18 days by 2050-2060 due to the shifts in plankton phenology. The PAHs and their bioaccumulation and biomagnification will respond seasonally and differently to climate change. Bioaccumulation of most of the PAHs will decrease with global warming, with higher decreasing rates appearing in winter and spring. Biomagnification of most of the PAHs from phytoplankton to zooplankton will increase with global warming, with higher increasing rates appearing in winter and spring. Our study provides novel insights into bioaccumulation and biomagnification of chemical pollutants in eutrophic waters under climate change scenarios. Copyright © 2017 Elsevier Ltd. All rights reserved.

Planktonic interactions and chaotic advection in Langmuir circulation

DEFF Research Database (Denmark)

Bees, Martin Alan; Mezic, I.; McGlade, J.

1998-01-01

The role of unsteady laminar flows for planktonic communities is investigated. Langmuir circulation is used, as a typical medium-scale structure, to illustrate mechanisms for the generation of plankton patches. Two behaviours are evident: chaotic regions that help to spread plankton and locally...

Composition and seasonal variation of phytoplankton community in Lake Hlan, Republic of Bénin

Directory of Open Access Journals (Sweden)

Arsène Mathieu Houssou

2016-12-01

Full Text Available Knowledge of biodiversity of aquatic ecosystems is nowadays a challenge for global research. Phytoplankton being very important in the sustainability of ecosystems, its mastery allows the development of early monitoring and evaluation tools of the health status of aquatic environments. The study aims to make an initial inventory of phytoplankton of the lake Hlan and to evaluate the influence of hydrologic season on its dynamics. Plankton samples were collected monthly between May and December 2012 using plankton net of 30 µm size. They were then treated and species identified using light microscopy. 39 species in 7 classes (Bacillariophyceae, 18 species in 10 genera, (Cyanophyceae, 5 species in 5 genera, (Chlorophyceae, 5 species in 3 genera, (Zygnematophyceae, 3 species in 2 genera, (Trebouxiophyceae, 2 species in 2 genera (Euglenophyceae, 4 species in 3 genera and (Dinophyceae, 2 species in 2 genera have been identified. The Shannon index varied between 4.8 and 5.1 bit cell-1. This shows that the ecosystem is balanced. Nevertheless, the presence of potentially toxic species requires a monitoring program for Lake Hlan.

Temporal variability and phylogenetic characterization of planktonic anammox bacteria in the coastal upwelling ecosystem off central Chile

Science.gov (United States)

Galán, Alexander; Molina, Verónica; Belmar, Lucy; Ulloa, Osvaldo

2012-01-01

The phylogenetic affiliation and temporal variability in the abundance of planktonic anammox bacteria were studied at a time-series station above the continental shelf off central Chile (∼36°S; bottom depth 93 m), a wind-driven, seasonal upwelling area, between August 2006 and April 2008. The study was carried out by cloning and sequencing the 16S rRNA gene and by using catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). Our results showed the presence of a single anammox bacteria-like ribotype during both upwelling and non-upwelling seasons, which was phylogenetically associated with a recently described oxygen-minimum-zone subcluster within the Candidatus Scalindua clade. Moreover, clear differences were observed in the temporal and vertical distribution of anammox cells. During the upwelling season (austral spring-summer), relatively high abundances (∼5500 cells mL -1) and large cells (0.8 μm 3-75.7 fg C cell -1) were found below 20 m depth. In contrast, during the non-upwelling season (austral fall-winter), lower abundances (∼600 cells mL -1) and smaller cells (0.1 μm 3-22.8 fg C cell -1) were found, predominantly associated with the bottom layer. Overall, our results indicate that the abundance and vertical distribution of anammox planktonic assemblages are related to the occurrence of seasonal, wind-driven, coastal upwelling, which in turn appears to offer favorable conditions for the development of these microorganisms. The dominance of a unique anammox bacteria-like ribotype could be related to the high environmental variability observed in the system, which prevents the establishment of other anammox lineages.

Composition of planktonic organisms and its associated physico ...

African Journals Online (AJOL)

Composition of plankton communities in two ponds at African Regional Agriculture Centre (ARAC) Aluu, Port Harcourt was undertaken between May and June 2004, to assess the composition, relative abundance and distribution of plankton. The diversity of plankton was poor. Twenty-eight taxa representing four (4) families ...

Wave of chaos in a diffusive system: Generating realistic patterns of patchiness in plankton-fish dynamics

International Nuclear Information System (INIS)

Upadhyay, Ranjit Kumar; Kumari, Nitu; Rai, Vikas

2009-01-01

We show that wave of chaos (WOC) can generate two-dimensional time-independent spatial patterns which can be a potential candidate for understanding planktonic patchiness observed in marine environments. These spatio-temporal patterns were obtained in computer simulations of a minimal model of phytoplankton-zooplankton dynamics driven by forces of diffusion. We also attempt to figure out the average lifetimes of these non-linear non-equilibrium patterns. These spatial patterns serve as a realistic model for patchiness found in aquatic systems (e.g., marine and oceanic). Additionally, spatio-temporal chaos produced by bi-directional WOCs is robust to changes in key parameters of the system; e.g., intra-specific competition among individuals of phytoplankton and the rate of fish predation. The ideas contained in the present paper may find applications in diverse fields of human endeavor.

Seasonal succession in zooplankton feeding traits reveals trophic trait coupling

DEFF Research Database (Denmark)

Kenitz, Kasia; Visser, Andre; Mariani, Patrizio

2017-01-01

non-motile cells flourishing in spring and motile community dominating during summer. The zooplankton community is dominated by active feeding-current feeders with peak biomass in the late spring declining during summer. The model reveals how zooplankton grazing reinforces protist plankton seasonal...

Seasonal dynamic thinning at Helheim Glacier

DEFF Research Database (Denmark)

Bevan, Suzanne L.; Luckman, Adrian; Khan, Shfaqat Abbas

2015-01-01

of 671±70kgm-3 and calculate that total water equivalent volume loss from the active part of the glacier (surface flow speeds >1 m day-1) ranges from 0.5 km3 in 2011 to 1.6 km3 in 2013. A rough ice-flux divergence analysis shows that at lower elevations (... the time series, that melt-induced acceleration is most likely the main driver of the seasonal dynamic thinning, as opposed to changes triggered by retreat....

Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems

Science.gov (United States)

Messié, Monique; Chavez, Francisco P.

2017-09-01

A simple combination of wind-driven nutrient upwelling, surface currents, and plankton growth/grazing equations generates zooplankton patchiness and hotspots in coastal upwelling regions. Starting with an initial input of nitrate from coastal upwelling, growth and grazing equations evolve phytoplankton and zooplankton over time and space following surface currents. The model simulates the transition from coastal (large phytoplankton, e.g., diatoms) to offshore (picophytoplankton and microzooplankton) communities, and in between generates a large zooplankton maximum. The method was applied to four major upwelling systems (California, Peru, Northwest Africa, and Benguela) using latitudinal estimates of wind-driven nitrate supply and satellite-based surface currents. The resulting zooplankton simulations are patchy in nature; areas of high concentrations coincide with previously documented copepod and krill hotspots. The exercise highlights the importance of the upwelling process and surface currents in shaping plankton communities.

Plankton food-webs: to what extent can they be simplified?

Directory of Open Access Journals (Sweden)

Domenico D'Alelio

2016-05-01

Full Text Available Plankton is a hugely diverse community including both unicellular and multicellular organisms, whose individual dimensions span over seven orders of magnitude. Plankton is a fundamental part of biogeochemical cycles and food-webs in aquatic systems. While knowledge has progressively accumulated at the level of single species and single trophic processes, the overwhelming biological diversity of plankton interactions is insufficiently known and a coherent and unifying trophic framework is virtually lacking. We performed an extensive review of the plankton literature to provide a compilation of data suitable for implementing food-web models including plankton trophic processes at high taxonomic resolution. We identified the components of the plankton community at the Long Term Ecological Research Station MareChiara in the Gulf of Naples. These components represented the sixty-three nodes of a plankton food-web. To each node we attributed biomass and vital rates, i.e. production, consumption, assimilation rates and ratio between autotrophy and heterotrophy in mixotrophic protists. Biomasses and rates values were defined for two opposite system’s conditions; relatively eutrophic and oligotrophic states. We finally identified 817 possible trophic links within the web and provided each of them with a relative weight, in order to define a diet-matrix, valid for both trophic states, which included all consumers, fromn anoflagellates to carnivorous plankton. Vital rates for plankton resulted, as expected, very wide; this strongly contrasts with the narrow ranges considered in plankton system models implemented so far. Moreover, the amount and variety of trophic links highlighted by our review is largely excluded by state-of-the-art biogeochemical and food-web models for aquatic systems. Plankton models could potentially benefit from the integration of the trophic diversity outlined in this paper: first, by using more realistic rates; second, by better

De scheiding van slib en plankton

NARCIS (Netherlands)

Budding, M.C.

1974-01-01

It is possible to separate non-living suspended matter and living plankton with the help of a common laboratory centrifuge and a commercial silica-gel called LUDOX. With this method it becomes possible to determine particle size of suspended matter and plankton separately with e.g. a Coulter

Cultivation of seaweed Gracilaria lemaneiformis enhanced biodiversity in a eukaryotic plankton community as revealed via metagenomic analyses.

Science.gov (United States)

Chai, Zhao Yang; He, Zhi Li; Deng, Yun Yan; Yang, Yu Feng; Tang, Ying Zhong

2018-02-01

Plankton diversity reflects the quality and health of waters and should be monitored as a critical feature of marine ecosystems. This study applied a pair of 28S rRNA gene-specific primers and pyrosequencing to assess the effects of large-scale cultivation of the seaweed Gracilaria lemaneiformis on the biodiversity of eukaryotic plankton community in the coastal water of Guangdong, China. With 1 million sequences (2,221 operational taxonomic units [OTUs]) obtained from 51 samples, we found that the biodiversity of eukaryotic plankton community was significantly higher in the seaweed cultivation area than that in the nearby control area as reflected in OTU richness, evenness (Shannon-Wiener index) and dominance (Simpson index) for total plankton community and its four subcategories when Gracilaria biomass reached the maximum, while no such a significant difference was observed before seaweed inoculation. Our laboratory experiment using an artificial phytoplankton community of nine species observed the same effects of Gracilaria exposure. Principal component analysis and principal coordinates analysis showed the plankton community structure in cultivation area markedly differed from the control area when Gracilaria biomass reached its maximum. Redundancy analysis showed that G. lemaneiformis was the critical factor in controlling the dynamics of eukaryotic plankton communities in the studied coastal ecosystem. Our results explicitly demonstrated G. lemaneiformis cultivation could enhance biodiversity of plankton community via allelopathy, which prevents one or several plankton species from blooming and consequently maintains a relatively higher biodiversity. Our study provided further support for using large-scale G. lemaneiformis cultivation as an effective approach for improving costal ecosystem health. © 2018 John Wiley & Sons Ltd.

Long-Term Patterns in the Population Dynamics of Daphnia longispina, Leptodora kindtii and Cyanobacteria in a Shallow Reservoir: A Self-Organising Map (SOM) Approach.

Science.gov (United States)

Wojtal-Frankiewicz, Adrianna; Kruk, Andrzej; Frankiewicz, Piotr; Oleksińska, Zuzanna; Izydorczyk, Katarzyna

2015-01-01

The recognition of long-term patterns in the seasonal dynamics of Daphnia longispina, Leptodora kindtii and cyanobacteria is dependent upon their interactions, the water temperature and the hydrological conditions, which were all investigated between 1999 and 2008 in the lowland Sulejow Reservoir. The biomass of cyanobacteria, densities of D. longispina and L. kindtii, concentration of chlorophyll a and water temperature were assessed weekly from April to October at three sampling stations along the longitudinal reservoir axis. The retention time was calculated using data on the actual water inflow and reservoir volume. A self-organising map (SOM) was used due to high interannual variability in the studied parameters and their often non-linear relationships. Classification of the SOM output neurons into three clusters that grouped the sampling terms with similar biotic states allowed identification of the crucial abiotic factors responsible for the seasonal sequence of events: cluster CL-ExSp (extreme/spring) corresponded to hydrologically unstable cold periods (mostly spring) with extreme values and highly variable abiotic factors, which made abiotic control of the biota dominant; cluster CL-StSm (stable/summer) was associated with ordinary late spring and summer and was characterised by stable non-extreme abiotic conditions, which made biotic interactions more important; and the cluster CL-ExSm (extreme/summer), was associated with late spring/summer and characterised by thermal or hydrological extremes, which weakened the role of biotic factors. The significance of the differences between the SOM sub-clusters was verified by Kruskal-Wallis and post-hoc Dunn tests. The importance of the temperature and hydrological regimes as the key plankton-regulating factors in the dam reservoir, as shown by the SOM, was confirmed by the results of canonical correlation analyses (CCA) of each cluster. The demonstrated significance of hydrology in seasonal plankton dynamics

A long-term study on crustacean plankton of a shallow tropical lake: the role of invertebrate predation

Directory of Open Access Journals (Sweden)

Marlene S. Arcifa

2015-06-01

Full Text Available The primary factor that governs the size and species composition of zooplankton is still a controversial issue and temperature is considered the main factor responsible for latitudinal differences. In waters with a narrow temperature range, such as in the tropics, predation may be a more important factor. Nearly three decades of intermittent studies of the crustacean plankton in a shallow tropical lake revealed that the main event that led to their restructuring was the appearance of a second predator, the water mite Krendowskia sp. The new predator and larvae of the dipteran Chaoborus brasiliensis Theobald exerted a combined, although asymmetrical effect on microcrustaceans. The period when the mite was detected was followed by the restructuring of the crustacean plankton community. Predation by these two invertebrates emerged as the factor responsible for community changes, involving an increased contribution of copepods and decreases in the relative abundance of smaller cladoceran species. In the short term, the mite caused a decrease in species richness and the annual mean instantaneous composition of cladocerans, a predominance of large-sized species (Daphnia ambigua Scourfield and Daphnia gessneri Herbst and the virtual disappearance of small species (e.g., Bosmina tubicen Brehm. The long-term impact resulted in increased species richness and the dominance of large and medium-sized cladocerans, such as D. gessneri and Ceriodaphnia richardi Sars. The larger body size of three cladocerans, the two Daphnia species and B. tubicen, in the long term, may be a response to the dominant predator, Chaoborus. The seasonal variation in the predator abundance, mainly Chaoborus larvae, allowed the prey to recover during the cool season. The copepods Tropocyclops prasinus meridionalis (Fischer and Thermocyclops decipiens Kiefer were less affected by predation than the cladocerans; their contribution to the crustacean plankton increased 12-28% after the

Drivers of Plankton Patch Formation, Persistence and Decline in East Sound, Orcas Island, Washington

Science.gov (United States)

2012-09-30

Population dynamics of the marine planktonic ciliate Strombidinopsis multiauris: its potential to control phytoplankton blooms . Aquat. Microb. Ecol., 20...radii with patch exploitation in the coastal ocean. 5th International Zooplankton Production Symposium. Pucón, Chile Menden-Deuer S & Harvey* EL

Seasonal dynamics and diversity of bacteria in retail oyster tissues.

Science.gov (United States)

Wang, Dapeng; Zhang, Qian; Cui, Yan; Shi, Xianming

2014-03-03

Oysters are one of the important vehicles for the transfer of foodborne pathogens. It was reported that bacteria could be bio-accumulated mainly in the gills and digestive glands. In artificially treated oysters, bacterial communities have been investigated by culture-independent methods after harvest. However, little information is available on the seasonal dynamics of bacterial accumulation in retail oyster tissues. In this study, retail oysters were collected from local market in different seasons. The seasonal dynamics and diversity of bacteria in oyster tissues, including the gills, digestive glands and residual tissues, were analyzed by denaturing gradient gel electrophoresis (DGGE). It was interesting that the highest bacterial diversity appeared in the Fall season, not in summer. Our results indicated that Proteobacteria was the predominant member (23/46) in oyster tissues. Our results also suggested that bacterial diversity in gills was higher than that in digestive glands and other tissues. In addition, not all the bacteria collected from surrounding water by gills were transferred to digestive glands. On the other hand, few bacteria were found in oyster tissues except in the gills. Therefore, the gills could be the best candidate target tissue for monitoring of pathogenic bacteria either to human or to oyster. Copyright © 2013 Elsevier B.V. All rights reserved.

ASSESSING THE STATE OF THE PELAGIC HABITAT: A CASE STUDY OF PLANKTON AND ITS ENVIRONMENT IN THE WESTERN IRISH SEA

Directory of Open Access Journals (Sweden)

Cordula Scherer

2016-11-01

Full Text Available Much work had been undertaken on tracking change in the condition of marine pelagic ecosystems and on identifying regime shifts. However, it is also necessary to relate change to states of good ecosystem health or what the European Marine Strategy Framework Directive (MSFD calls 'Good Environmental Status' (GES. Drawing on existing scientific and legislative principles, including those of OSPAR's 'Strategy to Combat Eutrophication', we propose a framework for assessing the status of what the MSFD calls the 'pelagic habitat' in temperate coastal seas. The framework uses knowledge of local ecohydrodynamic conditions, especially those relating to the stratification and optical environment, to guide expectations of what would be recognised as healthy in terms of ecosystem 'organisation' and 'vigour'. We apply this framework to the seasonally stratified regime of the Western Irish Sea, drawing on published and new work on stratification, nutrient and phytoplankton seasonal cycles, zooplankton, and the implications of plankton community structure and production for higher trophic levels. We conclude that, despite human pressures including nutrient enrichment, and the food-web effects of fisheries, the pelagic ecosystem here is in GES, and hence may be used as a reference for the 'Plankton Index' method of tracking change in state space in seasonally stratified waters.

Role of Delay on Planktonic Ecosystem in the Presence of a Toxic Producing Phytoplankton

Directory of Open Access Journals (Sweden)

Swati Khare

2011-01-01

Full Text Available A mathematical model is proposed to study the role of distributed delay on plankton ecosystem in the presence of a toxic producing phytoplankton. The model includes three state variables, namely, nutrient concentration, phytoplankton biomass, and zooplankton biomass. The release of toxic substance by phytoplankton species reduces the growth of zooplankton and this plays an important role in plankton dynamics. In this paper, we introduce a delay (time-lag in the digestion of nutrient by phytoplankton. The stability analysis of all the feasible equilibria are studied and the existence of Hopf-bifurcation for the interior equilibrium of the system is explored. From the above analysis, we observe that the supply rate of nutrient and delay parameter play important role in changing the dynamical behaviour of the underlying system. Further, we have derived the explicit algorithm which determines the direction and the stability of Hopf-bifurcation solution. Finally, numerical simulation is carried out to support the theoretical result.

Population dynamic of the swallowtail butterfly, Papilio polytes (Lepidoptera: Papilionidae in dry and wet seasons

Directory of Open Access Journals (Sweden)

SUWARNO

2010-01-01

Full Text Available Suwarno (2010 Population dynamic of the swallowtail butterfly, Papilio polytes (Lepidoptera: Papilionidae in dry and wet seasons. Biodiversitas 11: 19-23. The population dynamic of Papilio polytes L. (Lepidoptera: Papilionidae in dry and wet seasons was investigated in the citrus orchard in Tasek Gelugor, Pulau Pinang, Malaysia. Population of immature stages of P. polytes was observed alternate day from January to March 2006 (dry season, DS, from April to July 2006 (secondary wet season, SWS, and from October to December 2006 (primary wet season, PWS. The population dynamics of the immature stages of P. polytes varied between seasons. The immature stages of P. polytes are more abundance and significantly different in the PWS than those of the DS and the SWS. The larval densities in all seasons decreased with progressive development of the instar stages. Predators and parasitoids are the main factor in regulating the population abundance of immature stages of P. polytes. There were positive correlations between the abundance of immature stages of P. polytes and their natural enemies abundance in each season. Ooencyrtus papilioni Ashmead (Hymenoptera: Encyrtidae is the most egg parasitoid. Oxyopes quadrifasciatus L. Koch. and O. elegans L. Koch. (Araneae: Oxyopidae are the main predators in the young larvae, meanwhile Sycanus dichotomus Stal. (Heteroptera: Reduviidae, Calotes versicolor Fitzinger (Squamata: Agamidae, birds and praying mantis attacked the older larvae.

Seasonal development of planktonic rotifers in Slapy Reservoir (Czech Republic)

Czech Academy of Sciences Publication Activity Database

Devetter, Miloslav

2011-01-01

Roč. 66, č. 4 (2011), s. 662-668 ISSN 0006-3088 Institutional research plan: CEZ:AV0Z60660521 Keywords : rotifer community * seasonal development * downstream reservoir Subject RIV: EH - Ecology, Behaviour Impact factor: 0.557, year: 2011

Seasonal dynamics of snail populations in coastal Kenya: Model calibration and snail control

Science.gov (United States)

Gurarie, D.; King, C. H.; Yoon, N.; Wang, X.; Alsallaq, R.

2017-10-01

A proper snail population model is important for accurately predicting Schistosoma transmission. Field data shows that the overall snail population and that of shedding snails have a strong pattern of seasonal variation. Because human hosts are infected by the cercariae released from shedding snails, the abundance of the snail population sets ultimate limits on human infection. For developing a predictive dynamic model of schistosome infection and control strategies we need realistic snail population dynamics. Here we propose two such models based on underlying environmental factors and snail population biology. The models consist of two-stage (young-adult) populations with resource-dependent reproduction, survival, maturation. The key input in the system is seasonal rainfall which creates snail habitats and resources (small vegetation). The models were tested, calibrated and validated using dataset collected in Msambweni (coastal Kenya). Seasonal rainfall in Msambweni is highly variable with intermittent wet - dry seasons. Typical snail patterns follow precipitation peaks with 2-4-month time-lag. Our models are able to reproduce such seasonal variability over extended period of time (3-year study). We applied them to explore the optimal seasonal timing for implementing snail control.

Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology

Directory of Open Access Journals (Sweden)

R. Morard

2017-06-01

Full Text Available Deep-sea sediments constitute a unique archive of ocean change, fueled by a permanent rain of mineral and organic remains from the surface ocean. Until now, paleo-ecological analyses of this archive have been mostly based on information from taxa leaving fossils. In theory, environmental DNA (eDNA in the sediment has the potential to provide information on non-fossilized taxa, allowing more comprehensive interpretations of the fossil record. Yet, the process controlling the transport and deposition of eDNA onto the sediment and the extent to which it preserves the features of past oceanic biota remains unknown. Planktonic foraminifera are the ideal taxa to allow an assessment of the eDNA signal modification during deposition because their fossils are well preserved in the sediment and their morphological taxonomy is documented by DNA barcodes. Specifically, we re-analyze foraminiferal-specific metabarcodes from 31 deep-sea sediment samples, which were shown to contain a small fraction of sequences from planktonic foraminifera. We confirm that the largest portion of the metabarcode originates from benthic bottom-dwelling foraminifera, representing the in situ community, but a small portion (< 10 % of the metabarcodes can be unambiguously assigned to planktonic taxa. These organisms live exclusively in the surface ocean and the recovered barcodes thus represent an allochthonous component deposited with the rain of organic remains from the surface ocean. We take advantage of the planktonic foraminifera portion of the metabarcodes to establish to what extent the structure of the surface ocean biota is preserved in sedimentary eDNA. We show that planktonic foraminifera DNA is preserved in a range of marine sediment types, the composition of the recovered eDNA metabarcode is replicable and that both the similarity structure and the diversity pattern are preserved. Our results suggest that sedimentary eDNA could preserve the ecological structure of

seasonal population dynamics of rodents of mount chilalo, arsi ...

African Journals Online (AJOL)

Preferred Customer

ABSTRACT: A study on seasonal population dynamics of rodents was carried out on Mount. Chilalo from .... vegetation growth, availability of food and water, and ... vegetation (3,300–4,200 masl) (Alemayehu. Mengistu, 1975; APEDO and ABRDP, 2004). The mountain is one of the Afrotropical biodiversity hotspots areas.

Long-term and seasonal dynamics of dengue in Iquitos, Peru.

Directory of Open Access Journals (Sweden)

Steven T Stoddard

2014-07-01

Full Text Available Long-term disease surveillance data provide a basis for studying drivers of pathogen transmission dynamics. Dengue is a mosquito-borne disease caused by four distinct, but related, viruses (DENV-1-4 that potentially affect over half the world's population. Dengue incidence varies seasonally and on longer time scales, presumably driven by the interaction of climate and host susceptibility. Precise understanding of dengue dynamics is constrained, however, by the relative paucity of laboratory-confirmed longitudinal data.We studied 10 years (2000-2010 of laboratory-confirmed, clinic-based surveillance data collected in Iquitos, Peru. We characterized inter and intra-annual patterns of dengue dynamics on a weekly time scale using wavelet analysis. We explored the relationships of case counts to climatic variables with cross-correlation maps on annual and trimester bases.Transmission was dominated by single serotypes, first DENV-3 (2001-2007 then DENV-4 (2008-2010. After 2003, incidence fluctuated inter-annually with outbreaks usually occurring between October and April. We detected a strong positive autocorrelation in case counts at a lag of ∼ 70 weeks, indicating a shift in the timing of peak incidence year-to-year. All climatic variables showed modest seasonality and correlated weakly with the number of reported dengue cases across a range of time lags. Cases were reduced after citywide insecticide fumigation if conducted early in the transmission season.Dengue case counts peaked seasonally despite limited intra-annual variation in climate conditions. Contrary to expectations for this mosquito-borne disease, no climatic variable considered exhibited a strong relationship with transmission. Vector control operations did, however, appear to have a significant impact on transmission some years. Our results indicate that a complicated interplay of factors underlie DENV transmission in contexts such as Iquitos.

Estimating planktonic diversity through spatial dominance patterns in a model ocean.

Science.gov (United States)

Soccodato, Alice; d'Ovidio, Francesco; Lévy, Marina; Jahn, Oliver; Follows, Michael J; De Monte, Silvia

2016-10-01

In the open ocean, the observation and quantification of biodiversity patterns is challenging. Marine ecosystems are indeed largely composed by microbial planktonic communities whose niches are affected by highly dynamical physico-chemical conditions, and whose observation requires advanced methods for morphological and molecular classification. Optical remote sensing offers an appealing complement to these in-situ techniques. Global-scale coverage at high spatiotemporal resolution is however achieved at the cost of restrained information on the local assemblage. Here, we use a coupled physical and ecological model ocean simulation to explore one possible metrics for comparing measures performed on such different scales. We show that a large part of the local diversity of the virtual plankton ecosystem - corresponding to what accessible by genomic methods - can be inferred from crude, but spatially extended, information - as conveyed by remote sensing. Shannon diversity of the local community is indeed highly correlated to a 'seascape' index, which quantifies the surrounding spatial heterogeneity of the most abundant functional group. The error implied in drastically reducing the resolution of the plankton community is shown to be smaller in frontal regions as well as in regions of intermediate turbulent energy. On the spatial scale of hundreds of kms, patterns of virtual plankton diversity are thus largely sustained by mixing communities that occupy adjacent niches. We provide a proof of principle that in the open ocean information on spatial variability of communities can compensate for limited local knowledge, suggesting the possibility of integrating in-situ and satellite observations to monitor biodiversity distribution at the global scale. Copyright © 2016 Elsevier B.V. All rights reserved.

Impact of Seasonal Variability in Water, Plant and Soil Nutrient Dynamics in Agroecosystems

Science.gov (United States)

Pelak, N. F., III; Revelli, R.; Porporato, A. M.

2017-12-01

Agroecosystems cover a significant fraction of the Earth's surface, making their water and nutrient cycles a major component of global cycles across spatial and temporal scales. Most agroecosystems experience seasonality via variations in precipitation, temperature, and radiation, in addition to human activities which also occur seasonally, such as fertilization, irrigation, and harvesting. These seasonal drivers interact with the system in complex ways which are often poorly characterized. Crop models, which are widely used for research, decision support, and prediction of crop yields, are among the best tools available to analyze these systems. Though normally constructed as a set of dynamical equations forced by hydroclimatic variability, they are not often analyzed using dynamical systems theory and methods from stochastic ecohydrology. With the goal of developing this viewpoint and thus elucidating the roles of key feedbacks and forcings on system stability and on optimal fertilization and irrigation strategies, we develop a minimal dynamical system which contains the key components of a crop model, coupled to a carbon and nitrogen cycling model, driven by seasonal fluctuations in water and nutrient availability, temperature, and radiation. External drivers include seasonally varying climatic conditions and random rainfall forcing, irrigation and fertilization as well as harvesting. The model is used to analyze the magnitudes and interactions of the effects of seasonality on carbon and nutrient cycles, crop productivity, nutrient export of agroecosystems, and optimal management strategies with reference to productivity, sustainability and profitability. The impact of likely future climate scenarios on these systems is also discussed.

Development of a real-time PCR assay for detection of planktonic red king crab (Paralithodes camtschaticus (Tilesius 1815)) larvae

Science.gov (United States)

Jensen, Pamela C.; Purcell, Maureen K.; Morado, J. Frank; Eckert, Ginny L.

2012-01-01

The Alaskan red king crab (Paralithodes camtschaticus) fishery was once one of the most economically important single-species fisheries in the world, but is currently depressed. This fishery would benefit from improved stock assessment capabilities. Larval crab distribution is patchy temporally and spatially, requiring extensive sampling efforts to locate and track larval dispersal. Large-scale plankton surveys are generally cost prohibitive because of the effort required for collection and the time and taxonomic expertise required to sort samples to identify plankton individually via light microscopy. Here, we report the development of primers and a dual-labeled probe for use in a DNA-based real-time polymerase chain reaction assay targeting the red king crab, mitochondrial gene cytochrome oxidase I for the detection of red king crab larvae DNA in plankton samples. The assay allows identification of plankton samples containing crab larvae DNA and provides an estimate of DNA copy number present in a sample without sorting the plankton sample visually. The assay was tested on DNA extracted from whole red king crab larvae and plankton samples seeded with whole larvae, and it detected DNA copies equivalent to 1/10,000th of a larva and 1 crab larva/5mL sieved plankton, respectively. The real-time polymerase chain reaction assay can be used to screen plankton samples for larvae in a fraction of the time required for traditional microscopial methods, which offers advantages for stock assessment methodologies for red king crab as well as a rapid and reliable method to assess abundance of red king crab larvae as needed to improve the understanding of life history and population processes, including larval population dynamics.

Seasonal variation of the protozooplanktonic community in a tropical oligotrophic environment (Ilha Solteira reservoir, Brazil).

Science.gov (United States)

Mansano, A S; Hisatugo, K F; Leite, M A; Luzia, A P; Regali-Seleghim, M H

2013-05-01

The seasonal variation of the protozooplanktonic community (ciliates and testate amoebae) was studied in a tropical oligotrophic reservoir in Brazil, which was under the influence of two contrasting climatic seasons (rainy/warm and dry/cold). The aim of this study was to evaluate the effect of these climatic changes on physical, chemical and biological variables in the dynamic of this community. The highest mean density of total protozoans occurred in the rainy/warm season (5683.2 ind L-1), while the lowest was in the dry/cold (2016.0 ind L-1). Considering the seasonal variations, the protozoan groups that are truly planktonic, such as the oligotrichs (Spirotrichea), predominated in the dry season, whereas during the rainy season, due to the material input and resuspension of sediment, sessile protozoans of the Peritrichia group were the most important ones. The dominant protozoans were Urotricha globosa, Cothurnia annulata, Pseudodifflugia sp. and Halteria grandinella. The highest densities of H. grandinella were associated with more oxygenated and transparent water conditions, while the highest densities of C. annulata occurred in sites with high turbidity, pH and trophic state index (TSI). The study demonstrated that density and composition of protozooplanktonic species and groups of the reservoir suffered seasonal variation due to the environmental variables (mainly temperature, turbidity, water transparency, dissolved oxygen and TSI) and the biological variables (e.g. morphological characteristics, eating habits and escape strategies from predation of the species).

Large Plankton Enhance Heterotrophy Under Experimental Warming in a Temperate Coastal Ecosystem

KAUST Repository

Huete-Stauffer, Tamara Megan

2017-12-15

Microbes are key players in oceanic carbon fluxes. Temperate ecosystems are seasonally variable and thus suitable for testing the effect of warming on microbial carbon fluxes at contrasting oceanographic conditions. In four experiments conducted in February, April, August and October 2013 in coastal NE Atlantic waters, we monitored microbial plankton stocks and daily rates of primary production, bacterial heterotrophic production and respiration at in situ temperature and at 2 and 4°C over ambient values during 4-day incubations. Ambient total primary production (TPP) exceeded total community respiration (< 200 µm, TR) in winter and fall but not in spring and summer. The bacterial contribution to ecosystem carbon fluxes was low, with bacterial production representing on average 6.9 ± 3.2% of TPP and bacterial respiration (between 0.8 and 0.2 µm) contributing on average 35 ± 7% to TR. Warming did not result in a uniform increase in the variables considered, and most significant effects were found only for the 4°C increase. In the summer and fall experiments, under warm and nutrient-deficient conditions, the net TPP/TR ratio decreased by 39 and 34% in the 4°C treatment, mainly due to the increase in respiration of large organisms rather than bacteria. Our results indicate that the interaction of temperature and substrate availability in determining microbial carbon fluxes has a strong seasonal component in temperate planktonic ecosystems, with temperature having a more pronounced effect and generating a shift toward net heterotrophy under more oligotrophic conditions as found in summer and early fall.

Seasonal variability of planktonic copepods (Copepoda: Crustacea in a tropical estuarine region in Brazil

Directory of Open Access Journals (Sweden)

Cristina de Oliveira Dias

2009-12-01

Full Text Available The Caravelas River estuary and adjacent coastal region were studied during the rainy and dry seasons of 2003-2004 to assess the copepod community structure. Abiotic and biotic parameters were measured, and the total density, frequency and percentage of copepod taxa were determined for each sampling period. Copepod densities showed significant differences between sampling periods, with higher densities in the rainy seasons (Mean: 90,941.80 ind.m-3; S.D.: 26,364.79. The sampling stations located to the north and south, in the coastal region adjacent to the Caravelas River estuary presented the lowest copepod density values. The copepod assemblage was composed mainly of estuarine and estuarine/coastal copepods. The seasonal variations in temperature and salinity influenced the abundance of species during the rainy and dry seasons, with the following dominant species alternating: Paracalanus quasimodo Bowman, 1971 in the rainy season of 2003, Parvocalanus crassirostris Dahl, 1894 in the dry season of 2003 and Acartia lilljeborgii Giesbrecht, 1892 in the rainy and dry seasons of 2004. Non-parametric multidimensional scaling indicated differences in copepod assemblages between sampling periods, but not between sampling stations.

Planktonic Crustacean Culture - Live Planktonic Crustaceans as Live Feed for Finfish and Shrimps in Aquaculture

DEFF Research Database (Denmark)

Jepsen, Per Meyer; Syberg, Kristian; Drillet, Guillaume

2018-01-01

The cultivation of planktonic crustaceans as live feed is of paramount importance for the aquaculture and aquarium industries. The use of live cladocerans as feed for freshwater fish is limited to the aquarium industry, whereas Artemia and copepods are used to feed edible marine fish larvae...... assessments for hazardous chemicals. Cladocerans are widely used for ecotoxicology testing but Artemia and copepods are emerging new model species. In the present chapter, we review the culturing procedures of these important planktonic crustaceans: Artemia, cladocerans and copepods and discuss their use...

Seasonal distribution and interactions between plankton and microplastics in a tropical estuary

Science.gov (United States)

Lima, A. R. A.; Barletta, M.; Costa, M. F.

2015-11-01

The seasonal migration of a salt wedge and rainfall were the major factors influencing the spatiotemporal distribution of ichthyoplankton and microplastics along the main channel of the Goiana Estuary, NE Brazil. The most abundant taxa were the clupeids Rhinosardinia bahiensis and Harengula clupeola, followed by the achirid Trinectes maculatus (78.7% of the catch). Estuarine and mangrove larvae (e.g. Anchovia clupeoides, Gobionellus oceanicus), as well as microplastics were ubiquitous. During drier months, the salt wedge reaches the upper estuary and marine larvae (e.g. Cynoscion acoupa) migrated upstream until the zones of coastal waters influence. However, the meeting of waterfronts in the middle estuary forms a barrier that retains the microplastics in the upper and lower estuary most part of the year. During the late dry season, a bloom of zooplankton was followed by a bloom of fish larvae (12.74 ind. 100 m-3) and fish eggs (14.65 ind. 100 m-3) at the lower estuary. During the late rainy season, the high freshwater inflow flushed microplastics, together with the biota, seaward. During this season, a microplastic maximum (14 items 100 m-3) was observed, followed by fish larvae maximum (14.23 ind. 100 m-3) in the lower estuary. In contrast to fish larvae, microplastics presented positive correlation with high rainfall rates, being more strictly associated to flushing out/into the estuary than to seasonal variation in environmental variables. Microplastics represented half of fish larvae density. Comparable densities in the water column increase the chances of interaction between microplastics and fish larvae, including the ingestion of smaller fragments, whose shape and colour are similar to zooplankton prey.

Seasonal dynamics of Co60 accumulation by Elodea canadensis Rich

International Nuclear Information System (INIS)

Bochenin, V.F.; Chebotina, M.Ya.

1975-01-01

The seasonal dynamics of Co 60 accumulation by one of the most widely distributed fresh-water plants, elodea (Elodea canadensis Rich), were studied. Accumulation was shown to vary with the season. A very low coefficient of accumulation (500-700 units) was typical for the summer period (June to August). It increased in the fall, reached its highest values (3500-4000) in mid-winter (January), and dropped sharply in the spring. Radioisotope concentrations in the plant varied similarly. The cumulative capacity of plants for Co 60 may vary by a factor of 6 to 7 during the year. It is suggested that the seasonal changes in Co 60 accumulation may be caused by both differences in the physiological state of the plants at different times of the year, and by seasonal variations in the hydrochemical regime of the water reservoir. Experiments were done to clarify which of these mechanisms is the determining factor. (V.A.P.)

Seasonality and comparative dynamics of six childhood infections in pre-vaccination Copenhagen

DEFF Research Database (Denmark)

Metcalf, C. Jessica E.; Bjørnstad, Ottar N.; Grenfell, Bryan T.

2009-01-01

Seasonal variation in infection transmission is a key determinant of epidemic dynamics of acute infections. For measles, the best-understood strongly immunizing directly transmitted childhood infection, the perception is that term-time forcing is the main driver of seasonality in developed...... of seasonality and basic reproductive rate of infections that should result from term-time forcing are also not upheld. We conclude that where yearly trajectories of susceptible numbers are perturbed, e.g. via waning of immunity, seasonality is unlikely to be entirely driven by term-time forcing. For the three...... bacterial infections, pertussis, scarlet fever and diphtheria, there is additionally a strong increase in transmission during the late summer before the end of school vacations....

Seasonal dynamics of fish assemblage in a pond canal

Czech Academy of Sciences Publication Activity Database

Musil, J.; Adámek, Zdeněk; Baranyi, Ch.

2007-01-01

Roč. 15, č. 3-4 (2007), s. 217-226 ISSN 0967-6120. [New Challenges in Pond Aquaculture. České Budějovice, 26.04.2005-28.04.2005] Institutional research plan: CEZ:AV0Z60930519 Keywords : fish assemblage * pond canal * species richness * seasonal dynamics * alien species Subject RIV: GL - Fishing Impact factor: 0.828, year: 2007

Meteorological factors and pollen season dynamics of selected herbaceous plants in Szczecin, 2004-2008

Directory of Open Access Journals (Sweden)

Małgorzata Puc

2012-12-01

Full Text Available The pollen of mugwort, plantain, sorrel, nettle and pigweed is an important airborne allergen source worldwide. The occurrence of pollen grains in the air is a seasonal phenomenon and estimation of seasonal variability in the pollen count permits evaluation of the threat posed by allergens over a given area. The aim of the study was to analyse the dynamics of Artemisia, Plantago, Rumex, Urticaceae and Chenopodiaceae pollen season in Szczecin (western Poland in 2004-2008 and to establish a relationship between the meteorological parameters versus the pollen count of the taxa studied. Measurements were performed by the Hirst volumetric trap (model Lanzoni VPPS 2000. Consecutive phases during the pollen season were defined for each taxon (1, 5, 25, 50, 75, 95, 99% of annual total and duration of the season was determined using the 98% method. On the basis of this analysis, temporary differences in the dynamics of the seasons were most evident for Artemisia. Correlation analysis with weather parameters demonstrated that the maximum wind speed, mean and maximum air temperature, relative humidity and dew point are the main factors influencing the average daily pollen concentrations in the atmosphere.

Quasi-planktonic behavior of foraging top marine predators

Science.gov (United States)

Della Penna, Alice; de Monte, Silvia; Kestenare, Elodie; Guinet, Christophe; D'Ovidio, Francesco

2015-12-01

Monitoring marine top predators is fundamental for assessing the health and functioning of open ocean ecosystems. Although recently tracking observations have substantially increased, factors determining the horizontal exploration of the ocean by marine predators are still largely unknown, especially at the scale of behavioral switches (1-100 km, days-weeks). It is commonly assumed that the influence of water movement can be neglected for animals capable of swimming faster than the current. Here, we challenge this assumption by combining the use of biologging (GPS and accelerometry), satellite altimetry and in-situ oceanographic data (ADCP and drifting buoys) to investigate the effect of the mesoscale ocean dynamics on a marine predator, the southern elephant seal. A Lagrangian approach reveals that trajectories of elephant seals are characterized by quasi-planktonic bouts where the animals are horizontally drifting. These bouts correspond to periods of increased foraging effort, indicating that in the quasi-planktonic conditions energy is allocated to diving and chasing, rather than in horizontal search of favourable grounds. These results suggest that mesoscale features like eddies and fronts may act as a focal points for trophic interactions not only by bottom-up modulation of nutrient injection, but also by directly entraining horizontal displacements of the upper trophic levels.

Planktonic benthonic foraminiferal ratios: Modern patterns and Tertiary applicability

Science.gov (United States)

Gibson, T.G.

1989-01-01

The abundance of planktonic specimens in foraminiferal assemblages was determined in numerous bottom samples from inner neritic to deep oceanic depths along the Atlantic margin of the northeastern United States. The results augment previous studies in other areas that have shown a general increase in percentage of planktonic specimens in total foraminiferal bottom assemblages as water depth increases. The patterns found in this area of complex shelf bathymetry and hydrography illustrate the influence on the planktonic-benthonic percentages of water depth, distance from shore, different water mass properties and downslope movement of tests in high energy areas. The patterns found in the 661 samples from the Atlantic margin were compared with results from 795 stations in the Gulf of Mexico, Pacific Ocean and Red Sea. The relative abundance of planktonic specimens and water depth correlates positively in all open oceanic areas even though taxonomic composition and diversity of the faunas from different areas is variable. The variation of planktonic percentages in bottom samples within most depth intervals is large so that a precise depth determination cannot be made for any given value. However, an approximate upper depth limit for given percentages can be estimated for open ocean environments. A decrease in planktonic percentages is seen in the lower salinity and higher turbidity coastal waters of the Gulf of Maine. Planktonic percentages intermediate between the lower values in the less saline coastal waters and the higher values in the normal open oceanic conditions occur in the transitional area between the Gulf of Maine and the open marine Atlantic Ocean to the east. Similarly lowered values in another area of restricted oceanic circulation occur in the high salinity, clear, but nutrient-poor waters of the Gulf of Aqaba off the Red Sea. A comparison of the similarity of modern planktonic percentage values to those found in earlier Tertiary assemblages was made to

Radionuclides in plankton from the South Pacific Basin

International Nuclear Information System (INIS)

Marsh, K.V.; Buddemeier, R.W.

1984-01-01

An investigation has been initiated of the utility of marine plankton as bioconcentrating samplers of low-level marine radioactivity in the southern hemisphere. A literature review has shown that both freshwater and marine plankton have trace element and radionuclide concentration factors (relative to water) of up to 10 4 . In 1956 and 1958 considerable work was done on the accumulation and distribution of a variety of fission and activation products produced by nuclear tests in the Marshall Islands. Since then, studies, have largely been confined to a few radionuclides, and most of the work in the last twenty years has been done in the northern hemisphere. The authors participated in Operations Deepfreeze 1981 and 1982, collecting a total of 48 plankton samples from the USCGC Glacier on its Antarctic cruises. Battelle Pacific Northwest Laboratories sampled air, water, rain, and fallout. The authors were able to measure concentrations in plankton of the naturally-occurring radionuclides 7 Be, 40 K, and the U and Th series, and they believe that they have detected low levels of 144 Ce and 95 Nb in seven samples ranging as far south as 68 0 . Biological identification of the plankton suggests a possible correlation between radionuclide concentration and the protozoa content of the samples. 7 references, 5 figures, 1 table

Large-scale ocean connectivity and planktonic body size

KAUST Repository

Villarino, Ernesto; Watson, James R.; Jö nsson, Bror; Gasol, Josep M.; Salazar, Guillem; Acinas, Silvia G.; Estrada, Marta; Massana, Ramó n; Logares, Ramiro; Giner, Caterina R.; Pernice, Massimo C.; Olivar, M. Pilar; Citores, Leire; Corell, Jon; Rodrí guez-Ezpeleta, Naiara; Acuñ a, José Luis; Molina-Ramí rez, Axayacatl; Gonzá lez-Gordillo, J. Ignacio; Có zar, André s; Martí , Elisa; Cuesta, José A.; Agusti, Susana; Fraile-Nuez, Eugenio; Duarte, Carlos M.; Irigoien, Xabier; Chust, Guillem

2018-01-01

Global patterns of planktonic diversity are mainly determined by the dispersal of propagules with ocean currents. However, the role that abundance and body size play in determining spatial patterns of diversity remains unclear. Here we analyse spatial community structure - β-diversity - for several planktonic and nektonic organisms from prokaryotes to small mesopelagic fishes collected during the Malaspina 2010 Expedition. β-diversity was compared to surface ocean transit times derived from a global circulation model, revealing a significant negative relationship that is stronger than environmental differences. Estimated dispersal scales for different groups show a negative correlation with body size, where less abundant large-bodied communities have significantly shorter dispersal scales and larger species spatial turnover rates than more abundant small-bodied plankton. Our results confirm that the dispersal scale of planktonic and micro-nektonic organisms is determined by local abundance, which scales with body size, ultimately setting global spatial patterns of diversity.

Large-scale ocean connectivity and planktonic body size

KAUST Repository

Villarino, Ernesto

2018-01-04

Global patterns of planktonic diversity are mainly determined by the dispersal of propagules with ocean currents. However, the role that abundance and body size play in determining spatial patterns of diversity remains unclear. Here we analyse spatial community structure - β-diversity - for several planktonic and nektonic organisms from prokaryotes to small mesopelagic fishes collected during the Malaspina 2010 Expedition. β-diversity was compared to surface ocean transit times derived from a global circulation model, revealing a significant negative relationship that is stronger than environmental differences. Estimated dispersal scales for different groups show a negative correlation with body size, where less abundant large-bodied communities have significantly shorter dispersal scales and larger species spatial turnover rates than more abundant small-bodied plankton. Our results confirm that the dispersal scale of planktonic and micro-nektonic organisms is determined by local abundance, which scales with body size, ultimately setting global spatial patterns of diversity.

SEAMAP 2015 Fall Plankton Survey (PC1504, EK60)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — During the 2015 Fall Plankton Survey, plankton samples were collected from a systematic grid of stations to assess distribution, occurrence and abundance of the...

SEAMAP 2013 Fall Plankton Survey (PC1305, ME70)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — During the 2013 Fall Plankton Survey, plankton samples were collected from a systematic grid of stations to assess distribution, occurrence and abundance of the...

SEAMAP 2013 Fall Plankton Survey (PC1305, EK60)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — During the 2013 Fall Plankton Survey, plankton samples were collected from a systematic grid of stations to assess distribution, occurrence and abundance of the...

SEAMAP Spring 2015 Plankton Survey (GU1501, EK60)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — During the 2015 Spring Plankton Survey, plankton samples were collected from a systematic grid of stations to assess distribution, occurrence and abundance of the...

SEAMAP Spring 2016 Plankton Survey (R21601, EK60)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — During the 2016 Spring Plankton Survey, plankton samples were collected from a systematic grid of stations to assess distribution, occurrence and abundance of the...

SEAMAP Fall 2014 Plankton Survey (GU1405, EK60)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — During the 2014 Fall Plankton Survey, plankton samples were collected from a systematic grid of stations to assess distribution, occurrence and abundance of the...

Modulation of frontogenetic plankton production along a meandering jet by zonal wind forcing: An application to the Alboran Sea

Science.gov (United States)

Oguz, Temel; Mourre, Baptiste; Tintoré, Joaquin

2017-08-01

We present a coupled physical-biological modeling study to elucidate the changes in ageostrophic frontal dynamics and the frontogenetic plankton production characteristics of a meandering jet under the impacts of successive westerly/easterly wind events combined with seasonal variations in the upstream transport and buoyancy flux characteristics of the jet, using a case study for the Alboran Sea (Western Mediterranean). Their nonlinear coupling is shown to result in different forms of physical and biological characteristics of the background jet structure that follows a meandering path around two anticyclonic gyres in the western and eastern basins and a cyclonic eddy in between. The westerly, downfront wind events broaden the jet, and result in stronger cross-frontal density contrast and intensify ageostrophic cross-frontal secondary circulation. Thus, they improve the frontogenetic plankton production with respect to the no-wind case. They also support higher production along the northern coast in response to wind-induced coastal upwelling and spreading of resulting nutrient-rich, productive water by mesoscale stirring. These features weaken gradually as the jet transport reduces. In contrast, stronger and longer-lasting easterlies during the reduced jet transport phase weaken the currents and frontal density structure, change the circular Western Alboran Gyre to an elongated form, and shift the main axis of the jet towards the southern basin. Then, frontogenesis fails to contribute to phytoplankton production that becomes limited to the eddy pumping within cyclones. Apart from the frontogenetic production, eddy pumping, mesoscale stirring, and diapycnal mixing of nutrients support intermittent and localized phytoplankton patches over the basin.

The trophic role and impact of plankton ciliates in the microbial web structure of a tropical polymictic lake dominated by filamentous cyanobacteria

OpenAIRE

Alfonso Esquivel; Aude Barani; Miroslav Macek; Ruth Ruth Soto-Castor; Celia Bulit

2016-01-01

The recent interest in the plankton structures and dynamics in tropical and subtropical lakes has revealed important trends that set these lakes apart from temperate lakes, and one of the main differences is the enhanced importance of the microbial food web with respect to net plankton. Ciliates are a key component of subtropical and tropical microbial webs because of their role as dominant picoplankton grazers and their ability to channel picoplankton production to the uppermost trophic leve...

Community barcoding reveals little effect of ocean acidification on the composition of coastal plankton communities: Evidence from a long-term mesocosm study in the Gullmar Fjord, Skagerrak.

Directory of Open Access Journals (Sweden)

Julia A F Langer

Full Text Available The acidification of the oceans could potentially alter marine plankton communities with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidification on communities using traditional methods, few have used genetic analyses. Here, we use community barcoding to assess the impact of ocean acidification on the composition of a coastal plankton community in a large scale, in situ, long-term mesocosm experiment. High-throughput sequencing resulted in the identification of a wide range of planktonic taxa (Alveolata, Cryptophyta, Haptophyceae, Fungi, Metazoa, Hydrozoa, Rhizaria, Straminipila, Chlorophyta. Analyses based on predicted operational taxonomical units as well as taxonomical compositions revealed no differences between communities in high CO2 mesocosms (~ 760 μatm and those exposed to present-day CO2 conditions. Observed shifts in the planktonic community composition were mainly related to seasonal changes in temperature and nutrients. Furthermore, based on our investigations, the elevated CO2 did not affect the intraspecific diversity of the most common mesozooplankter, the calanoid copepod Pseudocalanus acuspes. Nevertheless, accompanying studies found temporary effects attributed to a raise in CO2. Differences in taxa composition between the CO2 treatments could, however, only be observed in a specific period of the experiment. Based on our genetic investigations, no compositional long-term shifts of the plankton communities exposed to elevated CO2 conditions were observed. Thus, we conclude that the compositions of planktonic communities, especially those in coastal areas, remain rather unaffected by increased CO2.

Community barcoding reveals little effect of ocean acidification on the composition of coastal plankton communities: Evidence from a long-term mesocosm study in the Gullmar Fjord, Skagerrak.

Science.gov (United States)

Langer, Julia A F; Sharma, Rahul; Schmidt, Susanne I; Bahrdt, Sebastian; Horn, Henriette G; Algueró-Muñiz, María; Nam, Bora; Achterberg, Eric P; Riebesell, Ulf; Boersma, Maarten; Thines, Marco; Schwenk, Klaus

2017-01-01

The acidification of the oceans could potentially alter marine plankton communities with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidification on communities using traditional methods, few have used genetic analyses. Here, we use community barcoding to assess the impact of ocean acidification on the composition of a coastal plankton community in a large scale, in situ, long-term mesocosm experiment. High-throughput sequencing resulted in the identification of a wide range of planktonic taxa (Alveolata, Cryptophyta, Haptophyceae, Fungi, Metazoa, Hydrozoa, Rhizaria, Straminipila, Chlorophyta). Analyses based on predicted operational taxonomical units as well as taxonomical compositions revealed no differences between communities in high CO2 mesocosms (~ 760 μatm) and those exposed to present-day CO2 conditions. Observed shifts in the planktonic community composition were mainly related to seasonal changes in temperature and nutrients. Furthermore, based on our investigations, the elevated CO2 did not affect the intraspecific diversity of the most common mesozooplankter, the calanoid copepod Pseudocalanus acuspes. Nevertheless, accompanying studies found temporary effects attributed to a raise in CO2. Differences in taxa composition between the CO2 treatments could, however, only be observed in a specific period of the experiment. Based on our genetic investigations, no compositional long-term shifts of the plankton communities exposed to elevated CO2 conditions were observed. Thus, we conclude that the compositions of planktonic communities, especially those in coastal areas, remain rather unaffected by increased CO2.

The biomass of the deep-sea benthopelagic plankton

Science.gov (United States)

Wishner, K. F.

1980-04-01

Deep-sea benthopelagic plankton samples were collected with a specially designed opening-closing net system 10 to 100 m above the bottom in five different oceanic regions at depths from 1000 to 4700 m. Benthopelagic plankton biomasses decrease exponentially with depth. At 1000 m the biomass is about 1% that of the surface zooplankton, at 5000 m about 0.1%. Effects of differences in surface primary productivity on deep-sea plankton biomass are much less than the effect of depth and are detectable only in a few comparisons of extreme oceanic regions. The biomass at 10 m above the bottom is greater than that at 100 m above the bottom (in a three-sample comparison), which could be a consequence of an enriched near-bottom environment. The deep-sea plankton biomass in the Red Sea is anomalously low. This may be due to increased decomposition rates in the warm (22°C) deep Red Sea water, which prevent much detritus from reaching the deep sea. A model of organic carbon utilization in the benthic boundary layer (bottom 100 m), incorporating results from deep-sea sediment trap and respiration studies, indicates that the benthopelagic plankton use only a small amount of the organic carbon flux. A large fraction of the flux is unaccounted for by present estimates of benthic and benthopelagic respiration.

Consequences of Stinging Plankton Blooms on Finfish Mariculture in the Mediterranean Sea

Directory of Open Access Journals (Sweden)

Mar Bosch-Belmar

2017-08-01

Full Text Available In recent years, caged finfish mariculture across European seas suffered production losses by severe fish mortality, following episodic outbreaks of invertebrate cnidarian stingers. Due to their stinging cells and injectable venoms, medusozoan jellyfish, or drifting propagules of polyp colonies at high density may impair caged fish health through toxic effects on vulnerable tissues of gills and skin, and related secondary bacterial infections. Gill disorders in European sea bass (Dicentrarchus labrax fish farms along the Spanish Mediterranean coast are commonly reported, but regular monitoring of the frequency of cnidarian outbreaks and their potential impacts on caged fish is still poorly enforced. In this study, two sea bass mariculture farms in Southern Spain (Málaga; Almería were monitored biweekly for zooplankton, phytoplankton and fish gills condition, over 13 or 30 months for the Málaga and Almería facilities, respectively, within the period 2012–2014. Significant, direct correlations were found among low water temperature, recorded fish mortalities, and high abundances of planktonic cnidarians, particularly of the hydrozoan siphonophores Muggiaea atlantica and M. kochii, and the larval stage of Ectopleura larynx, a common member of cage biofouling communities. A significant relationship between cnidarian densities and the quantitative scoring of gill pathology was also observed. In addition, high densities of long-bristled planktonic diatoms (Chaetoceros spp. coincided with a major fish mortality event (April 2012, Almería farm. Standardised monitoring of plankton dynamics and composition may help in promoting response capacities of Mediterranean mariculture managers to fish health challenges (such as stinging plankton blooms by (a improving diagnostic tools and preventative countermeasures and (b supporting the development of science-based spatial planning and sustainable growth of coastal mariculture.

Comparative dynamics, seasonality in transmission, and predictability of childhood infections in Mexico

Science.gov (United States)

Mahmud, A. S.; Metcalf, C. J. E.; Grenfell, B. T.

2018-01-01

The seasonality and periodicity of infections, and the mechanisms underlying observed dynamics, can have implications for control efforts. This is particularly true for acute childhood infections. Among these, the dynamics of measles is the best understood and has been extensively studied, most notably in the UK prior to the start of vaccination. Less is known about the dynamics of other childhood diseases, particularly outside Europe and the US. In this paper, we leverage a unique dataset to examine the epidemiology of six childhood infections - measles, mumps, rubella, varicella, scarlet fever and pertussis - across 32 states in Mexico from 1985 to 2007. This dataset provides us with a spatiotemporal probe into the dynamics of six common childhood infections, and allows us to compare them in the same setting over the same time period. We examine three key epidemiological characteristics of these infections – the age profile of infections, spatiotemporal dynamics, and seasonality in transmission - and compare with predictions from existing theory and past findings. Our analysis reveals interesting epidemiological differences between the six pathogens, and variations across space. We find signatures of term time forcing (reduced transmission during the summer) for measles, mumps, rubella, varicella, and scarlet fever; for pertussis, a lack of term time forcing could not be rejected. PMID:27873563

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

Science.gov (United States)

Morard, Raphaël; Darling, Kate F; Mahé, Frédéric; Audic, Stéphane; Ujiié, Yurika; Weiner, Agnes K M; André, Aurore; Seears, Heidi A; Wade, Christopher M; Quillévéré, Frédéric; Douady, Christophe J; Escarguel, Gilles; de Garidel-Thoron, Thibault; Siccha, Michael; Kucera, Michal; de Vargas, Colomban

2015-11-01

Planktonic foraminifera (Rhizaria) are ubiquitous marine pelagic protists producing calcareous shells with conspicuous morphology. They play an important role in the marine carbon cycle, and their exceptional fossil record serves as the basis for biochronostratigraphy and past climate reconstructions. A major worldwide sampling effort over the last two decades has resulted in the establishment of multiple large collections of cryopreserved individual planktonic foraminifera samples. Thousands of 18S rDNA partial sequences have been generated, representing all major known morphological taxa across their worldwide oceanic range. This comprehensive data coverage provides an opportunity to assess patterns of molecular ecology and evolution in a holistic way for an entire group of planktonic protists. We combined all available published and unpublished genetic data to build PFR(2), the Planktonic foraminifera Ribosomal Reference database. The first version of the database includes 3322 reference 18S rDNA sequences belonging to 32 of the 47 known morphospecies of extant planktonic foraminifera, collected from 460 oceanic stations. All sequences have been rigorously taxonomically curated using a six-rank annotation system fully resolved to the morphological species level and linked to a series of metadata. The PFR(2) website, available at http://pfr2.sb-roscoff.fr, allows downloading the entire database or specific sections, as well as the identification of new planktonic foraminiferal sequences. Its novel, fully documented curation process integrates advances in morphological and molecular taxonomy. It allows for an increase in its taxonomic resolution and assures that integrity is maintained by including a complete contingency tracking of annotations and assuring that the annotations remain internally consistent. © 2015 John Wiley & Sons Ltd.

Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing

Science.gov (United States)

Egge, Elianne Sirnæs; Johannessen, Torill Vik; Andersen, Tom; Eikrem, Wenche; Bittner, Lucie; Larsen, Aud; Sandaa, Ruth-Anne; Edvardsen, Bente

2015-01-01

Microalgae in the division Haptophyta play key roles in the marine ecosystem and in global biogeochemical processes. Despite their ecological importance, knowledge on seasonal dynamics, community composition and abundance at the species level is limited due to their small cell size and few morphological features visible under the light microscope. Here, we present unique data on haptophyte seasonal diversity and dynamics from two annual cycles, with the taxonomic resolution and sampling depth obtained with high-throughput sequencing. From outer Oslofjorden, S Norway, nano- and picoplanktonic samples were collected monthly for 2 years, and the haptophytes targeted by amplification of RNA/cDNA with Haptophyta-specific 18S rDNA V4 primers. We obtained 156 operational taxonomic units (OTUs), from c. 400.000 454 pyrosequencing reads, after rigorous bioinformatic filtering and clustering at 99.5%. Most OTUs represented uncultured and/or not yet 18S rDNA-sequenced species. Haptophyte OTU richness and community composition exhibited high temporal variation and significant yearly periodicity. Richness was highest in September–October (autumn) and lowest in April–May (spring). Some taxa were detected all year, such as Chrysochromulina simplex, Emiliania huxleyi and Phaeocystis cordata, whereas most calcifying coccolithophores only appeared from summer to early winter. We also revealed the seasonal dynamics of OTUs representing putative novel classes (clades HAP-3–5) or orders (clades D, E, F). Season, light and temperature accounted for 29% of the variation in OTU composition. Residual variation may be related to biotic factors, such as competition and viral infection. This study provides new, in-depth knowledge on seasonal diversity and dynamics of haptophytes in North Atlantic coastal waters. PMID:25893259

Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities

Directory of Open Access Journals (Sweden)

Josep M. Gasol

2000-06-01

Full Text Available Flow cytometry is rapidly becoming a routine methodology in aquatic microbial ecology. The combination of simple to use bench-top flow cytometers and highly fluorescent nucleic acid stains allows fast and easy determination of microbe abundance in the plankton of lakes and oceans. The different dyes and protocols used to stain and count planktonic bacteria as well as the equipment in use are reviewed, with special attention to some of the problems encountered in daily routine practice such as fixation, staining and absolute counting. One of the main advantages of flow cytometry over epifluorescence microscopy is the ability to obtain cell-specific measurements in large numbers of cells with limited effort. We discuss how this characteristic has been used for differentiating photosynthetic from non-photosynthetic prokaryotes, for measuring bacterial cell size and nucleic acid content, and for estimating the relative activity and physiological state of each cell. We also describe how some of the flow cytometrically obtained data can be used to characterize the role of microbes on carbon cycling in the aquatic environment and we prospect the likely avenues of progress in the study of planktonic prokaryotes through the use of flow cytometry.

Effect of climate and environmental changes on plankton biodiversity and bigeochemical cycles of the Dongsha (Pratas) Atoll, South China Sea

Science.gov (United States)

Lo, Wen-tseng; Hsu, Pei-Kai; Hunag, Jia-Jang; Wang, Yu-Huai

2013-04-01

Dongsha (Pratas) Atoll, the so called "Pearl Crown of South China Sea", is a well-developed atoll with a total area of 80000 hectares. It possesses various ecosystems and has very high biodiversity, but it is very sensitive to climate change and physical processes. According to our investigation within the shallow semi-enclosed atoll in April, July, and October, 2011 (i.e., spring, summer, and autumn, respectively), we found that plankton assemblages and hydrographical conditions exhibited clear seasonal and spatial variations. Colder and higher salinity water was observed in April, while warmer water in July and lower salinity water in October, respectively. Nutrient concentration within the atoll was similar to that of the oligotrophic South China Sea waters and seemed to be in nitrogen-limit situation, while the distribution pattern of DOC and POC was mainly attributed to Chla and imported detritus matters. Carbon deposition flux also showed significant seasonal changes, but POC/PN value was near Redfield ratio, implying mostly due to biogenic factors; however it could still be classified as a typical coral ecosystem, since CaCO3 sinking flux generally was 30 times higher than that of organic matter. Plankton biodiversity was quite high in the atoll, and preformed apparent seasonal succession; in total, 82 phytoplankton species and 67 copepod species were recorded; furthermore, crab zoea (17.3% of the total zooplankton by number), fish eggs (12.5%), and shrimp larvae (4.2%), were relatively abundant in zooplankton community, revealed that atoll might be a good hatching ground. We deduced that the seasonal patterns of chemical and biological variables were mainly influenced by monsoons and precipitation, while small scales of temporal and spatial variations could be ascribed to internal wave and tide in this study area.

Larval and Juvenile Ascothoracida (Crustacea) from the Plankton

OpenAIRE

Grygier, Mark J.

1988-01-01

Two kinds of previously recorded ascothoracid larvae from plankton over coral reefs in Hawaii and the Virgin Islands are redescribed as possible representatives of the Lauridae and Petrarcidae, respectively. A bathyal, tropical Atlantic ascothoracid larva from an epibenthic sled sample cannot confidently be identified to family. A planktonic, juvenile ascothoracidan from the eastern Indian Ocean belongs to the genus Synagoga.

Intraseasonal patterns in coastal plankton biomass off central Chile derived from satellite observations and a biochemical model

Science.gov (United States)

Gomez, Fabian A.; Spitz, Yvette H.; Batchelder, Harold P.; Correa-Ramirez, Marco A.

2017-10-01

Subseasonal (5-130 days) environmental variability can strongly affect plankton dynamics, but is often overlooked in marine ecology studies. We documented the main subseasonal patterns of plankton biomass in the coastal upwelling system off central Chile, the southern part of the Humboldt System. Subseasonal variability was extracted from temporal patterns in satellite data of wind stress, sea surface temperature, and chlorophyll from the period 2003-2011, and from a realistically forced eddy-resolving physical-biochemical model from 2003 to 2008. Although most of the wind variability occurs at submonthly frequencies (< 30 days), we found that the dominant subseasonal pattern of phytoplankton biomass is within the intraseasonal band (30-90 days). The strongest intraseasonal coupling between wind and plankton is in spring-summer, when increased solar radiation enhances the phytoplankton response to upwelling. Biochemical model outputs show intraseasonal shifts in plankton community structure, mainly associated with the large fluctuations in diatom biomass. Diatom biomass peaks near surface during strong upwelling, whereas small phytoplankton biomass peaks at subsurface depths during relaxation or downwelling periods. Strong intraseasonally forced changes in biomass and species composition could strongly impact trophodynamics connections in the ecosystem, including the recruitment of commercially important fish species such as common sardine and anchovy. The wind-driven variability of chlorophyll concentration was connected to mid- and high-latitude atmospheric anomalies, which resemble disturbances with frequencies similar to the tropical Madden-Julian Oscillation.

Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon

Science.gov (United States)

Carpenter, Kurt D.; Rounds, Stewart A.

2013-01-01

and water-quality sample data from 2006 to 2008 were combined with parts of a larger discrete-sample and continuous water-quality monitoring dataset and examined to identify patterns in water-quality and algal conditions since 1991, with a particular emphasis on 2003–08. Longitudinal plankton surveys were conducted in 2006–08 at six sites between river miles (RM) 24.5 and 3.4 at 2- to 3-week intervals, or 5–6 per season, and in-situ bioassay experiments were conducted in 2008 to examine the potential effects of wastewater treatment facility (WWTF) effluent and phosphorus additions on phytoplankton biomass and algal photosynthesis. Phytoplankton and zooplankton community composition, streamflow, and water-quality data were analyzed using multivariate statistical techniques to gain insights into plankton dynamics to determine what factors might be most tied to the abundance and characteristics of the phytoplankton assemblages, and identify possible causes of their declines. The connection between low-DO events and algal declines was clearly evident, as bloom crashes were nearly always followed by periods of low DO. Algal blooms occurred each year during 2006–08, producing maximum chlorophyll-a (Chl-a) values in June or July generally in the range of 50–80 micrograms per liter (µg/L). Bloom crashes and absence of sufficient algal photosynthesis in mid- to late-summer contributed to minimum DO concentrations that were less than the State standard of 6.5 milligrams per liter (mg/L) based on the 30-day mean daily concentration, for 62–74 days each year. At times, the absolute minimum State standard (4 mg/L DO) also was not met. To learn more about why low-DO events occurred, specific algal declines during 2003–08 were scrutinized to determine their likely causal factors. From this information, a series of hypotheses were formulated and evaluated in terms of their ability to explain recent declines in algal populations in the river in late summer

Seasonal dynamics and vertical distribution of plant-feeding nematode communities in grasslands

NARCIS (Netherlands)

Verschoor, B.C.; Goede, de R.G.M.; Hoop, de J.W.; Vries, de F.W.

2001-01-01

The vertical distribution and seasonal dynamics of plant- and fungal-feeding nematode taxa in permanent grasslands were investigated. Dolichodoridae, Paratylenchus, Pratylenchus, Tylenchidae and Aphelenchoides dominated the upper 10 cm soil and their numbers strongly decreased with depth. The

Sheldon spectrum and the plankton paradox: two sides of the same coin-a trait-based plankton size-spectrum model.

Science.gov (United States)

Cuesta, José A; Delius, Gustav W; Law, Richard

2018-01-01

The Sheldon spectrum describes a remarkable regularity in aquatic ecosystems: the biomass density as a function of logarithmic body mass is approximately constant over many orders of magnitude. While size-spectrum models have explained this phenomenon for assemblages of multicellular organisms, this paper introduces a species-resolved size-spectrum model to explain the phenomenon in unicellular plankton. A Sheldon spectrum spanning the cell-size range of unicellular plankton necessarily consists of a large number of coexisting species covering a wide range of characteristic sizes. The coexistence of many phytoplankton species feeding on a small number of resources is known as the Paradox of the Plankton. Our model resolves the paradox by showing that coexistence is facilitated by the allometric scaling of four physiological rates. Two of the allometries have empirical support, the remaining two emerge from predator-prey interactions exactly when the abundances follow a Sheldon spectrum. Our plankton model is a scale-invariant trait-based size-spectrum model: it describes the abundance of phyto- and zooplankton cells as a function of both size and species trait (the maximal size before cell division). It incorporates growth due to resource consumption and predation on smaller cells, death due to predation, and a flexible cell division process. We give analytic solutions at steady state for both the within-species size distributions and the relative abundances across species.

Individual and collective stock dynamics: intra-day seasonalities

International Nuclear Information System (INIS)

Allez, Romain; Bouchaud, Jean-Philippe

2011-01-01

We establish several new stylized facts concerning the intra-day seasonalities of stock dynamics. Beyond the well-known U-shaped pattern of the volatility, we find that the average correlation between stocks increases throughout the day, leading to a smaller relative dispersion between stocks. Somewhat paradoxically, the kurtosis (a measure of volatility surprises) reaches a minimum at the open of the market, when the volatility is at its peak. We confirm that the dispersion kurtosis is a markedly decreasing function of the index return. This means that during large market swings, the idiosyncratic component of the stock dynamics becomes sub-dominant. In a nutshell, the early hours of trading are dominated by idiosyncratic or sector-specific effects with little surprises, whereas the influence of the market factor increases throughout the day, and surprises become more frequent.

Seasonal migrations, body temperature fluctuations, and infection dynamics in adult amphibians

Directory of Open Access Journals (Sweden)

David R. Daversa

2018-05-01

Full Text Available Risks of parasitism vary over time, with infection prevalence often fluctuating with seasonal changes in the annual cycle. Identifying the biological mechanisms underlying seasonality in infection can enable better prediction and prevention of future infection peaks. Obtaining longitudinal data on individual infections and traits across seasons throughout the annual cycle is perhaps the most effective means of achieving this aim, yet few studies have obtained such information for wildlife. Here, we tracked spiny common toads (Bufo spinosus within and across annual cycles to assess seasonal variation in movement, body temperatures and infection from the fungal parasite, Batrachochytrium dendrobatidis (Bd. Across annual cycles, toads did not consistently sustain infections but instead gained and lost infections from year to year. Radio-tracking showed that infected toads lose infections during post-breeding migrations, and no toads contracted infection following migration, which may be one explanation for the inter-annual variability in Bd infections. We also found pronounced seasonal variation in toad body temperatures. Body temperatures approached 0 °C during winter hibernation but remained largely within the thermal tolerance range of Bd. These findings provide direct documentation of migratory recovery (i.e., loss of infection during migration and escape in a wild population. The body temperature reductions that we observed during hibernation warrant further consideration into the role that this period plays in seasonal Bd dynamics.

Seasonal prediction of the Leeuwin Current using the POAMA dynamical seasonal forecast model

Energy Technology Data Exchange (ETDEWEB)

Hendon, Harry H.; Wang, Guomin [Centre for Australian Weather and Climate Research, Bureau of Meteorology, PO Box 1289, Melbourne (Australia)

2010-06-15

The potential for predicting interannual variations of the Leeuwin Current along the west coast of Australia is addressed. The Leeuwin Current flows poleward against the prevailing winds and transports warm-fresh tropical water southward along the coast, which has a great impact on local climate and ecosystems. Variations of the current are tightly tied to El Nino/La Nina (weak during El Nino and strong during La Nina). Skilful seasonal prediction of the Leeuwin Current to 9-month lead time is achieved by empirical downscaling of dynamical coupled model forecasts of El Nino and the associated upper ocean heat content anomalies off the north west coast of Australia from the Australian Bureau of Meteorology Predictive Ocean Atmosphere Model for Australia (POAMA) seasonal forecast system. Prediction of the Leeuwin Current is possible because the heat content fluctuations off the north west coast are the primary driver of interannual annual variations of the current and these heat content variations are tightly tied to the occurrence of El Nino/La Nina. POAMA can skilfully predict both the occurrence of El Nino/La Nina and the subsequent transmission of the heat content anomalies from the Pacific onto the north west coast. (orig.)

Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing.

Science.gov (United States)

Egge, Elianne Sirnaes; Johannessen, Torill Vik; Andersen, Tom; Eikrem, Wenche; Bittner, Lucie; Larsen, Aud; Sandaa, Ruth-Anne; Edvardsen, Bente

2015-06-01

Microalgae in the division Haptophyta play key roles in the marine ecosystem and in global biogeochemical processes. Despite their ecological importance, knowledge on seasonal dynamics, community composition and abundance at the species level is limited due to their small cell size and few morphological features visible under the light microscope. Here, we present unique data on haptophyte seasonal diversity and dynamics from two annual cycles, with the taxonomic resolution and sampling depth obtained with high-throughput sequencing. From outer Oslofjorden, S Norway, nano- and picoplanktonic samples were collected monthly for 2 years, and the haptophytes targeted by amplification of RNA/cDNA with Haptophyta-specific 18S rDNA V4 primers. We obtained 156 operational taxonomic units (OTUs), from c. 400.000 454 pyrosequencing reads, after rigorous bioinformatic filtering and clustering at 99.5%. Most OTUs represented uncultured and/or not yet 18S rDNA-sequenced species. Haptophyte OTU richness and community composition exhibited high temporal variation and significant yearly periodicity. Richness was highest in September-October (autumn) and lowest in April-May (spring). Some taxa were detected all year, such as Chrysochromulina simplex, Emiliania huxleyi and Phaeocystis cordata, whereas most calcifying coccolithophores only appeared from summer to early winter. We also revealed the seasonal dynamics of OTUs representing putative novel classes (clades HAP-3-5) or orders (clades D, E, F). Season, light and temperature accounted for 29% of the variation in OTU composition. Residual variation may be related to biotic factors, such as competition and viral infection. This study provides new, in-depth knowledge on seasonal diversity and dynamics of haptophytes in North Atlantic coastal waters. © 2015 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

Plant nitrogen dynamics and nitrogen-use strategies under altered nitrogen seasonality and competition.

Science.gov (United States)

Yuan, Zhiyou; Liu, Weixing; Niu, Shuli; Wan, Shiqiang

2007-10-01

Numerous studies have examined the effects of climatic factors on the distribution of C(3) and C(4) grasses in various regions throughout the world, but the role of seasonal fluctuations in temperature, precipitation and soil N availability in regulating growth and competition of these two functional types is still not well understood. This report is about the effects of seasonality of soil N availability and competition on plant N dynamics and N-use strategies of one C(3) (Leymus chinensis) and one C(4) (Chloris virgata) grass species. Leymus chinensis and C. virgata, two grass species native to the temperate steppe in northern China, were planted in a monoculture and a mixture under three different N seasonal availabilities: an average model (AM) with N evenly distributed over the growing season; a one-peak model (OM) with more N in summer than in spring and autumn; and a two-peak model (TM) with more N in spring and autumn than in summer. The results showed that the altered N seasonality changed plant N concentration, with the highest value of L. chinensis under the OM treatment and C. virgata under the TM treatment, respectively. N seasonality also affected plant N content, N productivity and N-resorption efficiency and proficiency in both the C(3) and C(4) species. Interspecific competition influenced N-use and resorption efficiency in both the C(3) and C(4) species, with higher N-use and resorption efficiency in the mixture than in monoculture. The C(4) grass had higher N-use efficiency than the C(3) grass due to its higher N productivity, irrespective of the N treatment or competition. The observations suggest that N-use strategies in the C(3) and C(4) species used in the study were closely related to seasonal dynamics of N supply and competition. N seasonality might be involved in the growth and temporal niche separation between C(3) and C(4) species observed in the natural ecosystems.

UV sensitivity of planktonic net community production in ocean surface waters

Science.gov (United States)

Regaudie-de-Gioux, Aurore; Agustí, Susana; Duarte, Carlos M.

2014-05-01

The net plankton community metabolism of oceanic surface waters is particularly important as it more directly affects the partial pressure of CO2 in surface waters and thus the air-sea fluxes of CO2. Plankton communities in surface waters are exposed to high irradiance that includes significant ultraviolet blue (UVB, 280-315 nm) radiation. UVB radiation affects both photosynthetic and respiration rates, increase plankton mortality rates, and other metabolic and chemical processes. Here we test the sensitivity of net community production (NCP) to UVB of planktonic communities in surface waters across contrasting regions of the ocean. We observed here that UVB radiation affects net plankton community production at the ocean surface, imposing a shift in NCP by, on average, 50% relative to the values measured when excluding partly UVB. Our results show that under full solar radiation, the metabolic balance shows the prevalence of net heterotrophic community production. The demonstration of an important effect of UVB radiation on NCP in surface waters presented here is of particular relevance in relation to the increased UVB radiation derived from the erosion of the stratospheric ozone layer. Our results encourage design future research to further our understanding of UVB effects on the metabolic balance of plankton communities.

The identification of plankton tropical status in the Wonokromo, Dadapan and Juanda extreme water estuary

Science.gov (United States)

Sari, L. A.; Satyantini, W. H.; Manan, A.; Pursetyo, K. T.; Dewi, N. N.

2018-04-01

Wonokromo, Dadapan and Juanda estuaries are extreme waters located around Surabaya environment. This is because of a lot of organic material intake, which provided nutrients for plankton growth. In addition, the waters is also dynamic in reason of physico-chemical, geological and biological processes controlled by the tides and freshwater run-off from the river that empties into it. The objective of this study was to identify the presentation of plankton in extreme waters based on brightness and ammonia level. The study was conducted in January 2017. Three sampling locations were Wonokromo, Dadapan and Juanda estuaries. Each station consists of three points based on distances, which were 400, 700, and 1000 meters from the coastline. The brightness in Wonokromo, Dadapan, and Juanda environment was 60, 40, and 100 cm, respectively. The result of ammonia in Wonokromo, Dadapan, and Juanda estuary was 0.837, 0.626, and 0.396 mg/L, correspondingly. Nine classes of phytoplankton’s were found in three locations (bacillariophyceae, dynophyceae, chlorophyceae, cyanophyceae, crysophyceae, euglenoidea, trebouxlophyceae, mediophyceae, and nitachiaceae) and five classes of zooplanktons (maxillopoda, hexanuplia, copepoda, malacostraca, and oligotrichea). The density of plankton in Wonokromo, Dadapan and Juanda environments, was 37.64, 63.80, and 352.85 cells/L, respectively.

Epithelial cell detachment by Porphyromonas gingivalis biofilm and planktonic cultures

NARCIS (Netherlands)

Huang, L.; van Loveren, C.; Ling, J.; Wei, X.; Crielaard, W.; Deng, D.M.

2016-01-01

Porphyromonas gingivalis is present as a biofilm at the sites of periodontal infections. The detachment of gingival epithelial cells induced by P. gingivalis biofilms was examined using planktonic cultures as a comparison. Exponentially grown planktonic cultures or 40-h biofilms were co-incubated

Seasonal methane dynamics in three temperate grasslands on peat

DEFF Research Database (Denmark)

Schäfer, Carolyn; Elsgaard, Lars; Hoffmann, Carl Christian

2012-01-01

Background and Aims Drained peatlands are considered to be insignificant CH4 sources, but the effect of drainage on CH4 dynamics has not been extensively studied. We investigated seasonal dynamics of CH4 in two fen peat soils and one bog peat soil under permanent grassland in Denmark. Methods Soil......, even though soil CH4 concentrations of up to 155 and 1000 μmol CH4 dm−3 were measured in one of the fen peats and in the bog peat, respectively. Significant CH4 concentrations were observed above the water table. Methane production assays confirmed the presence of viable methanogens in the upper parts...... of the bog peat soil. The aerenchymous plant Juncus effusus L. liberated CH4 from the peat at rates of up to 3.3 mg CH4 m−2 h−1. No CH4 dynamics were observed in the second fen peat which, in contrast to the other two sites, had high sulfate concentrations. Conclusions Peat type and the distribution...

Seasonality in cholera dynamics: A rainfall-driven model explains the wide range of patterns in endemic areas

Science.gov (United States)

Baracchini, Theo; King, Aaron A.; Bouma, Menno J.; Rodó, Xavier; Bertuzzo, Enrico; Pascual, Mercedes

2017-10-01

Seasonal patterns in cholera dynamics exhibit pronounced variability across geographical regions, showing single or multiple peaks at different times of the year. Although multiple hypotheses related to local climate variables have been proposed, an understanding of this seasonal variation remains incomplete. The historical Bengal region, which encompasses the full range of cholera's seasonality observed worldwide, provides a unique opportunity to gain insights on underlying environmental drivers. Here, we propose a mechanistic, rainfall-temperature driven, stochastic epidemiological model which explicitly accounts for the fluctuations of the aquatic reservoir, and analyze with this model the historical dataset of cholera mortality in the Bengal region. Parameters are inferred with a recently developed sequential Monte Carlo method for likelihood maximization in partially observed Markov processes. Results indicate that the hydrological regime is a major driver of the seasonal dynamics of cholera. Rainfall tends to buffer the propagation of the disease in wet regions due to the longer residence times of water in the environment and an associated dilution effect, whereas it enhances cholera resurgence in dry regions. Moreover, the dynamics of the environmental water reservoir determine whether the seasonality is unimodal or bimodal, as well as its phase relative to the monsoon. Thus, the full range of seasonal patterns can be explained based solely on the local variation of rainfall and temperature. Given the close connection between cholera seasonality and environmental conditions, a deeper understanding of the underlying mechanisms would allow the better management and planning of public health policies with respect to climate variability and climate change.

UV sensitivity of planktonic net community production in ocean surface waters

OpenAIRE

Regaudie de Gioux, Aurore; Agustí, Susana; Duarte, Carlos M.

2014-01-01

The net plankton community metabolism of oceanic surface waters is particularly important as it more directly affects the partial pressure of CO2 in surface waters and thus the air-sea fluxes of CO2. Plankton communities in surface waters are exposed to high irradiance that includes significant ultraviolet blue (UVB, 280-315 nm) radiation. UVB radiation affects both photosynthetic and respiration rates, increase plankton mortality rates, and other metabolic and chemical processes. Here we tes...

Peripartal rumination dynamics and health status in cows calving in hot and cool seasons.

Science.gov (United States)

Paudyal, S; Maunsell, F; Richeson, J; Risco, C; Donovan, A; Pinedo, P

2016-11-01

Our objective was to evaluate the effect of season of calving, associated with variable levels of heat stress, on the dynamics of rumination during the prepartum period and early lactation of cows that were healthy or affected by peripartal health disorders. Three weeks before the estimated due date, 210 multiparous Holstein cows at the University of Florida Dairy Unit were affixed with a neck collar containing rumination loggers, providing rumination time (RT) in 2-h periods. One blood sample was collected in a subpopulation of cows (n=76) at 12 to 48h postcalving to assess metabolic status by determining serum calcium, nonesterified fatty acid, and β-hydroxybutyrate concentrations. The occurrence of peripartal health disorders (dystocia, clinical ketosis, clinical hypocalcemia, metritis, and mastitis) was assessed by University of Florida veterinarians and trained farm personnel. We analyzed the dynamics of daily RT over ± 14d relative to parturition in cows that were healthy or affected by specific health disorders by season of calving [hot season, June to September (n=77); cool season, November to April (n=118)] using repeated measures analysis and comparison of least squares means at different time points relative to calving. Rumination was consistently reduced on the day of calving in both healthy and sick cows in both the hot and cool seasons. Only hot-season calvings had shorter average daily RT prepartum and postpartum in cows affected by severe negative energy balance and subclinical ketosis. Dystocia during the hot season was associated with shorter daily RT prepartum; for cool-season calvings, cows with dystocia had reduced RT postpartum. We also observed reduced RT in cows with ketosis prepartum and postpartum in both the hot and cool seasons. Daily RT was reduced postpartum in cows with hypocalcemia and mastitis that calved during the cool season, and it was shorter in cows with metritis in both the hot and cool seasons. Our results indicated that

Automatic plankton image classification combining multiple view features via multiple kernel learning.

Science.gov (United States)

Zheng, Haiyong; Wang, Ruchen; Yu, Zhibin; Wang, Nan; Gu, Zhaorui; Zheng, Bing

2017-12-28

Plankton, including phytoplankton and zooplankton, are the main source of food for organisms in the ocean and form the base of marine food chain. As the fundamental components of marine ecosystems, plankton is very sensitive to environment changes, and the study of plankton abundance and distribution is crucial, in order to understand environment changes and protect marine ecosystems. This study was carried out to develop an extensive applicable plankton classification system with high accuracy for the increasing number of various imaging devices. Literature shows that most plankton image classification systems were limited to only one specific imaging device and a relatively narrow taxonomic scope. The real practical system for automatic plankton classification is even non-existent and this study is partly to fill this gap. Inspired by the analysis of literature and development of technology, we focused on the requirements of practical application and proposed an automatic system for plankton image classification combining multiple view features via multiple kernel learning (MKL). For one thing, in order to describe the biomorphic characteristics of plankton more completely and comprehensively, we combined general features with robust features, especially by adding features like Inner-Distance Shape Context for morphological representation. For another, we divided all the features into different types from multiple views and feed them to multiple classifiers instead of only one by combining different kernel matrices computed from different types of features optimally via multiple kernel learning. Moreover, we also applied feature selection method to choose the optimal feature subsets from redundant features for satisfying different datasets from different imaging devices. We implemented our proposed classification system on three different datasets across more than 20 categories from phytoplankton to zooplankton. The experimental results validated that our system

Trophic strategies of unicellular plankton

DEFF Research Database (Denmark)

Chakraborty, Subhendu; Nielsen, Lasse Tor; Andersen, Ken Haste

2017-01-01

. To this end, we develop and calibrate a trait-based model for unicellular planktonic organisms characterized by four traits: cell size and investments in phototrophy, nutrient uptake, and phagotrophy. We use the model to predict how optimal trophic strategies depend on cell size under various environmental...... unicellulars are colimited by organic carbon and nutrients, and only large photoautotrophs and smaller mixotrophs are nutrient limited; (2) trophic strategy is bottom-up selected by the environment, while optimal size is top-down selected by predation. The focus on cell size and trophic strategies facilitates......Unicellular plankton employ trophic strategies ranging from pure photoautotrophs over mixotrophy to obligate heterotrophs (phagotrophs), with cell sizes from 10-8 to 1 μg C. A full understanding of how trophic strategy and cell size depend on resource environment and predation is lacking...

Sensitivity of planktonic and biofilm-associated Aeromonas spp. to ionizing radiation

International Nuclear Information System (INIS)

Nagar, Vandan; Bandekar, J.R.

2015-01-01

Genus Aeromonas has emerged as an important human pathogen because it causes a variety of diseases including gastroenteritis and extra-intestinal infections. Aeromonas have the ability to adhere and form biofilms on food surfaces and food contact surfaces. Biofilm formation on foods and food contact surfaces is the major reason for contamination, cross contamination and post-processing contamination of the final food product leading to food spoilage, product rejection, economic losses and food-borne diseases. Biofilms have shown high resistance to heat, desiccation, acidic condition, high salt concentration, antibiotics and other food preservatives. Earlier studies in our laboratory have shown that ionizing radiation effectively inactivates Aeromonas in different food products. However, the relative efficacy of this process against biofilm associated cells versus free-living planktonic cells of Aeromonas is not well documented. Therefore, the dose of gamma radiation required to reduce the population by 90% (D10) was calculated for planktonic and biofilm-associated A. salmonicida Y567 and A. hydrophila A331 cells. Both A. hydrophila A331 and A. salmonicida Y567 expressed significant ability to attach and grow on glass surface following incubation at 30℃ in TSB. Ionizing radiation effectively reduced the populations of both planktonic and biofilm-associated cells for both the strains. Mean cell counts of survivors and surviving fraction of planktonic and biofilm-associated cells decreased with increased irradiation doses. The D10 values of planktonic cells and biofilm cells for A. salmonicida (Y567) were 232.65 Gy and 248.41 Gy, respectively; whereas, the D10 values of planktonic cells and biofilm cells for A. hydrophila (A331) were 249.2 Gy and 240.2 Gy respectively. No significant difference in the D10 values of planktonic and biofilm associated Aeromonas was observed. The influence of the cultured state of the organism, i.e., planktonic versus biofilm associated

Developmental Stages of some Tropical and Subtropical Planktonic Marine Copepods

NARCIS (Netherlands)

Björnberg, Tagea K.S.

1972-01-01

Most planktonic marine copepods have nauplii which differ greatly from the copepodids so that it is difficult to relate them to the adult form. Rearing experiments are usually unsuccessful; only 8% of ca. 800 species of planktonic marine copepods have identified nauplii (see below cited list). To

Diversity and Seasonal Dynamics of Actinobacteria Populations in Four Lakes in Northeastern Germany

Science.gov (United States)

Allgaier, Martin; Grossart, Hans-Peter

2006-01-01

The phylogenetic diversity and seasonal dynamics of freshwater Actinobacteria populations in four limnologically different lakes of the Mecklenburg-Brandenburg Lake District (northeastern Germany) were investigated. Fluorescence in situ hybridization was used to determine the seasonal abundances and dynamics of total Actinobacteria (probe HGC69a) and the three actinobacterial subclusters acI, acI-A, and acI-B (probes AcI-852, AcI-840-1, and AcI-840-2). Seasonal means of total Actinobacteria abundances in the epilimnia of the lakes varied from 13 to 36%, with maximum values of 30 to 58%, of all DAPI (4′,6′-diamidino-2-phenylindole)-stained cells. Around 80% of total Actinobacteria belonged to the acI cluster. The two subclusters acI-A and acI-B accounted for 60 to 91% of the acI cluster and showed seasonal means of 49% (acI-B) and 23% (acI-A) in relation to the acI cluster. Total Actinobacteria and members of the clusters acI and acI-B showed distinct seasonal changes in their absolute abundances, with maxima in late spring and fall/winter. In eight clone libraries constructed from the lakes, a total of 76 actinobacterial 16S rRNA gene sequences were identified from a total of 177 clones. The majority of the Actinobacteria sequences belonged to the acI and acIV cluster. Several new clusters and subclusters were found (acSTL, scB1-4, and acIVA-D). The majority of all obtained 16S rRNA gene sequences are distinct from those of already-cultured freshwater Actinobacteria. PMID:16672495

Standing out from the crowd: Spotting your targets in a mixed plankton sample.

Science.gov (United States)

Harada, Alice E; Burton, Ronald S

2017-11-01

The diversity of marine organisms is staggering, and this fact is readily appreciated by microscopic examination of the contents of a plankton net after a short tow across the ocean surface. Although this diversity is beautiful, it can present a significant problem for those seeking to extract information about a single species of interest. Enumeration of the eggs and larvae of a specific target species can provide a quantitative window into reproductive dynamics that are of great use for fisheries stock assessment and management. But how do you efficiently sort through the mass of plankton and identify target species' eggs and larvae that may be morphologically indistinguishable from those of a number of other local species? In this issue of Molecular Ecology Resources, Oxley et al. () describe an innovative in situ hybridization (ISH) approach that successfully solves this important problem and opens an exciting new avenue to ichthyoplankton analysis that may be widely adopted by both fish ecologists and fisheries managers. © 2017 John Wiley & Sons Ltd.

[Research advances in ecological stoichiometry of marine plankton].

Science.gov (United States)

Chen, Lei; Li, Chao-Lun

2014-10-01

Ecological stoichiometry can be simply defined as: The biology of elements from molecules to the biosphere, which spans all levels of the environment and of the life. It's a new idea to build a unified theory and becomes an inevitable trend to develop the ecological science. Marine ecosystems, which contribute to 50% of the biosphere biomass, are the important component of the global biogeochemical cycles. Marine zooplankton plays an important role in the material circulation and energy flow of marine ecosystems and serves as a connecting link between the preceding and the following in a more precise understanding of the key elemental cycles. However, research on ecological stoichiometry of marine plankton is fragmentary and rare. This article summarized the ecological phenomena and mechanisms of limiting elements affecting marine plankton, the response of biochemical substances to nutrition limitation, and the food chain transmission and feedback of nutrition limitation. Meanwhile, we also put forward some perspectives for future research of ecological stoichiometry of plankton in China' s seas.

Periodic matrix models for seasonal dynamics of structured populations with application to a seabird population.

Science.gov (United States)

Cushing, J M; Henson, Shandelle M

2018-02-03

For structured populations with an annual breeding season, life-stage interactions and behavioral tactics may occur on a faster time scale than that of population dynamics. Motivated by recent field studies of the effect of rising sea surface temperature (SST) on within-breeding-season behaviors in colonial seabirds, we formulate and analyze a general class of discrete-time matrix models designed to account for changes in behavioral tactics within the breeding season and their dynamic consequences at the population level across breeding seasons. As a specific example, we focus on egg cannibalism and the daily reproductive synchrony observed in seabirds. Using the model, we investigate circumstances under which these life history tactics can be beneficial or non-beneficial at the population level in light of the expected continued rise in SST. Using bifurcation theoretic techniques, we study the nature of non-extinction, seasonal cycles as a function of environmental resource availability as they are created upon destabilization of the extinction state. Of particular interest are backward bifurcations in that they typically create strong Allee effects in population models which, in turn, lead to the benefit of possible (initial condition dependent) survival in adverse environments. We find that positive density effects (component Allee effects) due to increased adult survival from cannibalism and the propensity of females to synchronize daily egg laying can produce a strong Allee effect due to a backward bifurcation.

Ecological partitioning and diversity in tropical planktonic foraminifera

Directory of Open Access Journals (Sweden)

Seears Heidi A

2012-04-01

Full Text Available Abstract Background Ecological processes are increasingly being viewed as an important mode of diversification in the marine environment, where the high dispersal potential of pelagic organisms, and a lack of absolute barriers to gene flow may limit the occurrence of allopatric speciation through vicariance. Here we focus on the potential role of ecological partitioning in the diversification of a widely distributed group of marine protists, the planktonic foraminifera. Sampling was conducted in the tropical Arabian Sea, during the southwest (summer monsoon, when pronounced environmental conditions result in a strong disparity in temperature, salinity and productivity between distinct northern and southern water masses. Results We uncovered extensive genetic diversity within the Arabian Sea planktonic foraminifera, identifying 13 morphospecies, represented by 20 distinct SSU rRNA genetic types. Several morphospecies/genetic types displayed non-random biogeographical distributions, partitioning between the northern and southern water masses, giving a strong indication of independent ecological adaptations. Conclusions We propose sea-surface primary productivity as the main factor driving the geographical segregation of Arabian Sea planktonic foraminifera, during the SW monsoon, with variations in symbiotic associations possibly playing a role in the specific ecological adaptations observed. Our findings suggest that ecological partitioning could be contributing to the high levels of 'cryptic' genetic diversity observed within the planktonic foraminifera, and support the view that ecological processes may play a key role in the diversification of marine pelagic organisms.

The structure and evolution of plankton communities

Science.gov (United States)

Longhurst, Alan R.

New understanding of the circulation of ancient oceans is not yet matched by progress in our understanding of their pelagic ecology, though it was the planktonic ecosystems that generated our offshore oil and gas reserves. Can we assume that present-day models of ecosystem function are also valid for ancient seas? This question is addressed by a study of over 4000 plankton samples to derive a comprehensive, global description of zooplankton community structure in modern oceans: this shows that copepods form only 50% of the biomass of all plankton, ranging from 70% in polar to 35% in tropical seas. Comparable figures are derived from 14 other taxonomic categories of zooplankton. For trophic groupings, the data indicate globally: geletinous predators - 14%; gelatinous herbivores - 4%; raptorial predators - 33%; macrofiltering herbivores - 20%; macrofiltering omnivores - 25%; and detritivores - 3%. A simple, idealized model for the modern pelagic ecosystem is derived from these percentages which indicates that metazooplankton are not the most important consumers of pico- and nano-plankton production which itself probably constitutes 90% of primary production in warm oceans. This model is then compared with candidate life-forms available in Palaeozoic and Mesozoic oceans to determine to what extent it is also valid for ancient ecosystems: it is concluded that it is probably unnecessary to postulate models fundamentally differing from it in order to accommodate the life-forms, both protozoic and metazoic, known to have populated ancient seas. Remarkably few life-forms have existed which cannot be paralleled in the modern ocean, which contains remarkably few life-forms which cannot be paralleled in the Palaeozoic ocean. As a first assumption, then, it is reasonable to assume that energy pathways were similar in ancient oceans to those we study today.

Seasonal module dynamics of Turbinaria triquetra (Fucales, Phaeophyceae) in the southern Red Sea

NARCIS (Netherlands)

Ateweberhan, Mebrahtu; Bruggemann, J. Henrich; Breeman, Anneke M.

2006-01-01

Module dynamics in the fucoid alga Turbinaria triquetra (J. Agardh) Kutzing were studied on a shallow reef flat in the southern Red Sea. Seasonal patterns in thallus density and size were determined, and the initiation, growth, reproduction, and shedding of modules were studied using a tagging

Progressive changes in the Western English Channel foster a reorganization in the plankton food web

DEFF Research Database (Denmark)

Reygondeau, Gabriel; Molinero, J.C.; Coombs, S.

2015-01-01

. (2013) drive a profound restructuration of the plankton community modifying the phenology and the dominance of key planktonic groups including fish larvae. Consequently, the slow but deep modifications detected in the plankton community highlight a climate driven ecosystem shift in the Western English...

Ecological-network models link diversity, structure and function in the plankton food-web

Science.gov (United States)

D'Alelio, Domenico; Libralato, Simone; Wyatt, Timothy; Ribera D'Alcalà, Maurizio

2016-02-01

A planktonic food-web model including sixty-three functional nodes (representing auto- mixo- and heterotrophs) was developed to integrate most trophic diversity present in the plankton. The model was implemented in two variants - which we named ‘green’ and ‘blue’ - characterized by opposite amounts of phytoplankton biomass and representing, respectively, bloom and non-bloom states of the system. Taxonomically disaggregated food-webs described herein allowed to shed light on how components of the plankton community changed their trophic behavior in the two different conditions, and modified the overall functioning of the plankton food web. The green and blue food-webs showed distinct organizations in terms of trophic roles of the nodes and carbon fluxes between them. Such re-organization stemmed from switches in selective grazing by both metazoan and protozoan consumers. Switches in food-web structure resulted in relatively small differences in the efficiency of material transfer towards higher trophic levels. For instance, from green to blue states, a seven-fold decrease in phytoplankton biomass translated into only a two-fold decrease in potential planktivorous fish biomass. By linking diversity, structure and function in the plankton food-web, we discuss the role of internal mechanisms, relying on species-specific functionalities, in driving the ‘adaptive’ responses of plankton communities to perturbations.

[Effect of Pseudomonas aeruginosa exometabolites on planktonic and biofilm cultures of Escherichia coli].

Science.gov (United States)

Kuznetsova, M V; Karpunina, T I; Maslennikova, I L; Nesterova, L Iu; Demakov, V A

2012-01-01

Study the effect of P. aeruginosa exometabolites on planktonic and biofilm cultures of bioluminescent E. coli strain. E. coli K12 TG1 (pF1 lux+ Ap(r)) recombinant bioluminescent strain, P. aeruginosa ATCC 27853 reference strain and 2 nosocomial isolates were used. Pyocyanin and pyoverdin content in supernatant of P. aeruginosa over-night cultures was evaluated according to E. Deziel et al. (2001). Planktonic and biofilm cultures of E. coli were obtained in 96-well plates (LB, statically, 37 degrees C), optical density of plankton, film biomass (OD600, OD580) and bioluminescence in plankton and biofilm were evaluated in microplate reader Infiniti M200 (Tecan, Austria). P. aeruginosa exometabolites increased the duration of lag-phase in E. coli, and short term exposition inhibited luminescence of planktonic cells. These effects are determined by bactericidal action ofpyocyanin and pyoverdin. Supernatants ofover-night cultures of P. aeruginosa inhibit formation of biofilm and disrupt the formed biofilm of E. coli. Effect of pyocyanin and pyoverdin on these processes is not established, other factors may have higher significance. Bioluminescence of E. coli K12 TGI that reflects the energetic status of the cell allows to evaluate and prognose the character of coexistence of P. aeruginosa in combined with E. coli planktonic and biofilm culture.

Volume 90, Issue1 (February 2005)Articles in the Current Issue:Original PaperSeasonal Dynamics of Benthic and Planktonic Algae in a Nutrient-Rich Lowland River (Spree, Germany)

Science.gov (United States)

Werner, Petra; Köhler, Jan

2005-02-01

We studied chlorophyll a (chl. a), biovolume and species composition of benthic algae and phytoplankton in the eutrophic lower River Spree in 1996. The chl. a concentration was estimated as 3.5 (2.7-4.5) μg/cm2 for epipsammon, 9.4 (7.4-11.9) μg/cm2 for epipelon and 6.7 (5.7-7.8) μg/cm2 for the epilithon (median and 95% C. L.). The mean total biomass of benthic algae was significantly higher (6.0 μg chl. a/cm2) than the areal chl. a content of the pelagic zone (1.6 μg chl. a/cm2). Although certain phytoplankton taxa were abundant in the periphyton, benthic taxa generally dominated the assemblages. Seasonal dynamics of benthic algae were probably controlled by light and nitrate supply (sand), discharge fluctuations (sand, mud) and invertebrate grazing (stones). This paper shows the importance of benthic algae even in phytoplankton-rich lowland rivers with sandy or muddy sediments.

Seasonal timing of first rain storms affects rare plant population dynamics

Science.gov (United States)

Levine, J.M.; McEachern, A.K.; Cowan, C.

2011-01-01

A major challenge in forecasting the ecological consequences of climate change is understanding the relative importance of changes to mean conditions vs. changes to discrete climatic events, such as storms, frosts, or droughts. Here we show that the first major storm of the growing season strongly influences the population dynamics of three rare and endangered annual plant species in a coastal California (USA) ecosystem. In a field experiment we used moisture barriers and water addition to manipulate the timing and temperature associated with first major rains of the season. The three focal species showed two- to fivefold variation in per capita population growth rates between the different storm treatments, comparable to variation found in a prior experiment imposing eightfold differences in season-long precipitation. Variation in germination was a major demographic driver of how two of three species responded to the first rains. For one of these species, the timing of the storm was the most critical determinant of its germination, while the other showed enhanced germination with colder storm temperatures. The role of temperature was further supported by laboratory trials showing enhanced germination in cooler treatments. Our work suggests that, because of species-specific cues for demographic transitions such as germination, changes to discrete climate events may be as, if not more, important than changes to season-long variables.

LC-MS-MS aboard ship: tandem mass spectrometry in the search for phycotoxins and novel toxigenic plankton from the North Sea.

Science.gov (United States)

Krock, Bernd; Tillmann, Urban; John, Uwe; Cembella, Allan

2008-11-01

Phycotoxins produced by various species of toxigenic microalgae occurring in the plankton are a global threat to the security of seafood resources and the health of humans and coastal marine ecosystems. This has necessitated the development and application of advanced methods in liquid chromatography coupled to mass spectrometry (LC-MS) for monitoring of these compounds, particularly in plankton and shellfish. Most such chemical analyses are conducted in land-based laboratories on stored samples, and thus much information on the near real-time biogeographical distribution and dynamics of phycotoxins in the plankton is unavailable. To resolve this problem, we conducted ship-board analysis of a broad spectrum of phycotoxins collected directly from the water column on an oceanographic cruise along the North Sea coast of Scotland, Norway, and Denmark. We equipped the ship with a triple-quadrupole linear ion-trap hybrid LC-MS-MS system for detection and quantitative analysis of toxins, such as domoic acid, gymnodimine, spirolides, dinophysistoxins, okadaic acid, pectenotoxins, yessotoxins, and azaspiracids (AZAs). We focused particular attention on the detection of AZAs, a group of potent nitrogenous polyether toxins, because the culprit species associated with the occurrence of these toxins in shellfish has been controversial. Marine toxins were analyzed directly from size-fractionated plankton net tows (20 microm mesh size) and Niskin bottle samples from discrete depths, after rapid methanolic extraction but without any further clean-up. Almost all expected phycotoxins were detected in North Sea plankton samples, with domoic acid and 20-methylspirolide G being most abundant. Although AZA was the least abundant of these toxins, the high sensitivity of the LC-MS-MS enabled detailed quantification, indicating that the highest amounts of AZA-1 were present in the southern Skagerrak in the 3-20 microm size-fraction. The direct on-board toxin measurements enabled isolation

Community structure and seasonal dynamics of diatom biofilms and associated grazers in intertidal mudflats

NARCIS (Netherlands)

Sahan, E.; Sabbe, K.; Creach, V.; Hernandez-Raquet, G.; Vyverman, W.; Stal, L.J.; Muyzer, G.

2007-01-01

The composition and seasonal dynamics of biofilm-associated eukaryotic communities were analysed at the metre and kilometre scale along a salinity gradient in the Westerschelde estuary (The Netherlands), using microscopy and a genetic fingerprinting technique (PCR-DGGE). Microphytobenthic biomass,

Reconstruction of trophic pathways between plankton and the North Iberian sardine (Sardina pilchardus using stable isotopes

Directory of Open Access Journals (Sweden)

Antonio Bode

2004-03-01

Full Text Available Feeding on phyto- and zooplankton by juvenile (< 1 year old and adult sardines (Sardina pilchardus was inferred from analyses of natural abundance of stable carbon and nitrogen isotopes in samples from the northwestern Iberian Peninsula (Spain collected at the beginning of the upwelling season and peak spawning period of sardine. Plankton samples were fractionated through nets of 20, 200, 500, 1000 and 2000 ?m mesh-size and the muscle protein of individual sardines was isolated before isotopic determinations. Up to six planktonic components and two sardine feeding types were identified from the modes in the frequency distributions of isotope abundance values. Also, the most probable pathways for carbon and nitrogen flows between compartments were analysed. The resulting food web revealed a relatively large degree of omnivory, both in plankton and sardine components, which confirms that complex trophic interactions could also occur in pelagic upwelling ecosystems. Young sardines had isotope abundance values clustered around a single mode in the frequency distribution, while adult sardines displayed two main modes. These modes are interpreted as representative of two extreme feeding types: one related to the individual capture of zooplankton prey and the other to unselective filter-feeding. Although both types of feeding could include micro- (20-200 ?m and mesozooplankton (200-2000 ?m prey, phytoplankton appears to be ingested mainly by filter-feeding. However, even adult sardines must be mainly zoophagous to achieve the observed isotopic abundance values, taking into account current assumptions on stable isotope enrichment through trophic levels. From the differences in the resulting pathways using either carbon or nitrogen isotopes, we interpreted that sardines acquire most of the protein nitrogen from zooplankton while a substantial fraction of their carbon would derive from phytoplankton. These interpretations agree with the information

Effects of energy related activities on the plankton of the Chesapeake Bay. Section 1. Progress report, 1 August 1976--30 September 1977

International Nuclear Information System (INIS)

Taft, J.L.

1977-01-01

Progress is reported on a comprehensive study of the ecology of the Chesapeake Bay estuary system. Emphasis is placed on seasonal variations of initial energy fixation by phytoplankton primary producers and subsequent energy transfer to herbivours and becterial heterotrophs. The impact of chemical and radioactive effluents from electric power plants on the ecology of Chesapeake Bay will be assessed. Data are included on the role of plankton metabolism in regenerating nutrients, nutrient exchange with sediments, and the role of micro-zooplankton in nutrient cycling

Dosimetry of natural and man-made alpha emitters in plankton

International Nuclear Information System (INIS)

Paschoa, A.S.; Baptista, G.B.; Wrenn, M.E.; Eisenbrid, M.

1980-11-01

Comparison between the natural and man-made alpha radiation dose rates to plankton can be important for predicting the potential long-term effects on aquatic biota resulting from the routine or accidental radioactive releases from the nuclear fuel cycle. A contribution is made here towards the goal of comparing natural with man-made alpha radiation dose rates to plankton using the same method of calculation in both cases. (Author) [pt

Daytime pelagic schooling behaviour and relationships with plankton patch distribution in the Sicily Strait (Mediterranean Sea

Directory of Open Access Journals (Sweden)

B. Patti

2011-06-01

Full Text Available In this study, hydroacoustic data collected with a scientific echosounder working at two frequencies (38 and 120 kHz over the continental shelf off the southern Sicilian coast were used in order to investigate the relationship between fish schools and plankton patches. Specifically, image analysis algorithms were applied to raw echograms in order to detect and characterise pelagic fish schools and plankton aggregations, considered as a proxy of food availability. The relationship was first investigated using estimated total plankton biomass over the whole water column and, second, by dividing the study area into three sub-regions and further distinguishing plankton patches between the surface and the bottom. In the relatively lower plankton abundance areas of Zone 1 (northern sector of the study area, results showed an inverse relationship between the biomass (and density of fish schools and the biomass of co-occurring plankton patches located close to the bottom. Instead, over the Sicilian-Maltese shelf (Zone 3, characterised by higher plankton abundances, a direct relationship was found when using plankton data from the whole water column. The observed difference between Zones 1 and 3 is probably due to diverse dominant fish species in the two sub-regions.

Modelling emergent trophic strategies in plankton

DEFF Research Database (Denmark)

Andersen, Ken Haste; Aksnes, Dag L.; Berge, Terje

2015-01-01

Plankton are typically divided into phytoplankton and zooplankton in marine ecosystem models. Yet, most protists in the photic zone engage in some degree of phagotrophy, and it has been suggested that trophic strategy is really a continuum between pure phototrophs (phytoplankton) and pure...

Dynamics in Microbial Composition and Functionality over a Season in Two Contrasting Estuarine Systems

DEFF Research Database (Denmark)

Traving, Sachia; Bentzon-Tilia, Mikkel; Mantikci, Mustafa

2015-01-01

In aquatic microbial ecology it remains unclear how bacterial community composition and dynamics are coupled to functionality, and whether this putative coupling varies over the season. In this study we address the questions if bacterial community composition can be linked to community function, ...

TOF-SIMS characterization of planktonic foraminifera

International Nuclear Information System (INIS)

Vering, G.; Crone, C.; Bijma, J.; Arlinghaus, H.F.

2003-01-01

Oceanic sediment properties that are closely related to former environmental (e.g. climatic) parameters are called 'proxies'. Planktonic foraminifera are small protists which make up part of the plankton. Certain element concentrations, element ratios and isotopic ratios of their calcite shell found in the sediment can be used as proxies reflecting the state of the ocean during the life of the animal; they supply useful information for the reconstruction of environmental parameters. Time-of-flight secondary ion mass spectrometry (TOF-SIMS) was used to examine the inner and outer part of foraminiferal shells, as well as foraminiferal shells dissolved in HCl. High resolution elemental images and mass spectra were obtained from the foraminifera. The data show that TOF-SIMS is a useful technique for determining the elemental distribution and for measuring isotope ratios such as δ 11 B with high precision in a single foraminiferal shell

TOF-SIMS characterization of planktonic foraminifera

Energy Technology Data Exchange (ETDEWEB)

Vering, G.; Crone, C.; Bijma, J.; Arlinghaus, H.F

2003-01-15

Oceanic sediment properties that are closely related to former environmental (e.g. climatic) parameters are called 'proxies'. Planktonic foraminifera are small protists which make up part of the plankton. Certain element concentrations, element ratios and isotopic ratios of their calcite shell found in the sediment can be used as proxies reflecting the state of the ocean during the life of the animal; they supply useful information for the reconstruction of environmental parameters. Time-of-flight secondary ion mass spectrometry (TOF-SIMS) was used to examine the inner and outer part of foraminiferal shells, as well as foraminiferal shells dissolved in HCl. High resolution elemental images and mass spectra were obtained from the foraminifera. The data show that TOF-SIMS is a useful technique for determining the elemental distribution and for measuring isotope ratios such as {delta}{sup 11}B with high precision in a single foraminiferal shell.

Zooplankton motile behavior: traits and trade-offs in planktonic copepods

DEFF Research Database (Denmark)

van Someren Gréve, Hans

Research on planktonic copepod ecology is vital to understand the factors controlling marine food web dynamics since copepods are the major components of zooplankton communities and the main link between trophic levels in marine environments. Despite their taxonomic diversity, copepods share...... certain phenotypic characteristics, or ´traits´, that are essential in determining trophic interactions and fitness. One important characteristic that decisively influences organism interactions is behavior. Copepods display two distinct behavioral strategies in terms of motility: ´active´ (feeding...... differences between genders in feeding efficiency and predation risk. Finally, we also found that foraging activity decreased with increasing food availability, especially in active feeding strategies, resulting in a decrease in predation risk. Therefore, changes in behavior depending on food availability...

Simulated Sampling of Estuary Plankton

Science.gov (United States)

Fortner, Rosanne W.; Jenkins, Deborah Bainer

2009-01-01

To find out about the microscopic life in the valuable estuary environment, it is usually necessary to be near the water. This dry lab offers an alternative, using authentic data and a simulation of plankton sampling. From the types of organisms found in the sample, middle school students can infer relationships in the biological and physical…

Spatial and Temporal Water Quality Dynamics in the Lake Maumelle Reservoir (Arkansas): Geochemical and Planktonic Variance in a Drinking Water Source

Science.gov (United States)

Carey, M. D.; Ruhl, L. S.

2017-12-01

The Lake Maumelle reservoir is Central Arkansas's main water supply. Maintaining a high standard of water quality is important to the over 400,000 residents of this area whom rely on this mesotrophic waterbody for drinking water. Lake Maumelle is also a scenic attraction for recreational boating and fishing. Past research has focused primarily on watershed management with land use/land cover modeling and quarterly water sampling of the 13.91mi2 reservoir. The surrounding land within the watershed is predominately densely forested, with timber farms and the Ouachita National Forest. This project identifies water quality changes spatially and temporally, which have not been as frequently observed, over a 6-month timespan. Water samples were collected vertically throughout the water column and horizontally throughout the lake following reservoir zonation. Parameters collected vertically for water quality profiles are temperature, dissolved oxygen, electrical conductivity, salinity, and pH. Soft sediment samples were collected and pore water was extracted by centrifuge. Cation and anion concentrations in the water samples were determined using ion chromatography, and trace element concentrations were determined using ICPMS. Planktonic abundances were determined using an inverted microscope and a 5ml counting chamber. Trace element, cation, and anion concentrations have been compared with planktonic abundance and location to determine microorganismal response to geochemical variance. During June 2017 sampling, parameters varied throughout the water column (temperature decreased 4 degrees Celsius and dissolved oxygen decreased from 98% to 30% from surface to bottom depths), revealing that the reservoir was becoming stratified. Collected plankton samples revealed the presence of copepod, daphnia, and dinoflagellate algae. Utricularia gibba was present in the littoral zone. Low electrical conductivity readings and high water clarity are consistent with the lake

Seasonal dynamics of structure and functional activity of ectomycorrhizal roots of the Siberian fir

Directory of Open Access Journals (Sweden)

T. A. Sizonenko

2017-12-01

Full Text Available The aim of our work was to study seasonal dynamics of the Siberian fir Abies sibirica Ledeb. ectomycorrhizal morpho-anatomical structure, respiration rate and fluorescence. The study was carried out in the bilberry-sphagnum spruce forest in the middle taiga of the Komi Republic, Russia. The morpho-anatomical structure and fluorescence parameters were studied by light and luminescence microscopy. Thin root respiration was studied in intact fine roots in the field using an infrared gas analyzer. 12 subtypes of fungal mantels were revealed in ectomycorrhizal fir roots; their amount and composition demonstrated seasonal dynamic changes. At the beginning vegetation stage, the diversity and proportion of pseudoparenchymatous and double covers were maximal. Plant component of ectomycorrhizae that includes cortical parenchyma and stele had high activity of fluorescence during the entire vegetation period. The dynamics of staining of fungal component (fungal mantel and Hartig net was more contrasting. The highest fluorescence intensity of cortical parenchyma was found in ectomycorrhizae with maximal fungal mantel thickness. High proportion of tannin cells in cortical parenchyma was related with low intensity of fungal mantel and Hartig net fluorescence. During vegetation season, maximal amount of intensively strained ectomycorrhizal elements occurred in July and unstrained – in June and August. Relation between fine roots respiration and an increase of brightly strained ectomycorrhizal structural elements in fir roots was not statistically significant. Root CO2-emission was lower in May and September in comparison with summer months. For respiration rate of fir fine roots we found its strong positive correlation with the litter temperature.

Identification of major planktonic sulfur oxidizers in stratified freshwater lake.

Directory of Open Access Journals (Sweden)

Hisaya Kojima

Full Text Available Planktonic sulfur oxidizers are important constituents of ecosystems in stratified water bodies, and contribute to sulfide detoxification. In contrast to marine environments, taxonomic identities of major planktonic sulfur oxidizers in freshwater lakes still remain largely unknown. Bacterioplankton community structure was analyzed in a stratified freshwater lake, Lake Mizugaki in Japan. In the clone libraries of 16S rRNA gene, clones very closely related to a sulfur oxidizer isolated from this lake, Sulfuritalea hydrogenivorans, were detected in deep anoxic water, and occupied up to 12.5% in each library of different water depth. Assemblages of planktonic sulfur oxidizers were specifically analyzed by constructing clone libraries of genes involved in sulfur oxidation, aprA, dsrA, soxB and sqr. In the libraries, clones related to betaproteobacteria were detected with high frequencies, including the close relatives of Sulfuritalea hydrogenivorans.

The taxonomy and seasonal population dynamics of some Magela Creek flood plain microcrustaceans (Cladocera and copedoda)

International Nuclear Information System (INIS)

Julli, M.E.

1986-01-01

Six Magela Creek floodplain billabongs were sampled between September 1981 and January 1983 to determine the seasonal population dynamics of littoral and limnetic microcrustaceans. Thirty-seven cladoceran and four copepod species were identified amongst littoral weedbeds and several unidentified harpacticoid copepods and ostracods were also found. By comparison only 6 cladoceran and 4 copepod species were found in limnetic areas. Littoral species generally attained their highest densities during the mid-Wet to Early-dry seasons. The number of open water species present in samples generally increased with the progression of the Dry season. Towards the end of the Dry season, a simplification of the limnetic species assemblage occurred in some billabongs, perhaps in response to adverse changes in water quality

Activities of Fluconazole, Caspofungin, Anidulafungin, and Amphotericin B on Planktonic and Biofilm Candida Species Determined by Microcalorimetry

Science.gov (United States)

Maiolo, Elena Maryka; Furustrand Tafin, Ulrika; Borens, Olivier

2014-01-01

We investigated the activities of fluconazole, caspofungin, anidulafungin, and amphotericin B against Candida species in planktonic form and biofilms using a highly sensitive assay measuring growth-related heat production (microcalorimetry). C. albicans, C. glabrata, C. krusei, and C. parapsilosis were tested, and MICs were determined by the broth microdilution method. The antifungal activities were determined by isothermal microcalorimetry at 37°C in RPMI 1640. For planktonic Candida, heat flow was measured in the presence of antifungal dilutions for 24 h. Candida biofilm was formed on porous glass beads for 24 h and exposed to serial dilutions of antifungals for 24 h, and heat flow was measured for 48 h. The minimum heat inhibitory concentration (MHIC) was defined as the lowest antifungal concentration reducing the heat flow peak by ≥50% (≥90% for amphotericin B) at 24 h for planktonic Candida and at 48 h for Candida biofilms (measured also at 24 h). Fluconazole (planktonic MHICs, 0.25 to >512 μg/ml) and amphotericin B (planktonic MHICs, 0.25 to 1 μg/ml) showed higher MHICs than anidulafungin (planktonic MHICs, 0.015 to 0.5 μg/ml) and caspofungin (planktonic MHICs, 0.125 to 0.5 μg/ml). Against Candida species in biofilms, fluconazole's activity was reduced by >1,000-fold compared to its activity against the planktonic counterparts, whereas echinocandins and amphotericin B mainly preserved their activities. Fluconazole induced growth of planktonic C. krusei at sub-MICs. At high concentrations of caspofungin (>4 μg/ml), paradoxical growth of planktonic C. albicans and C. glabrata was observed. Microcalorimetry enabled real-time evaluation of antifungal activities against planktonic and biofilm Candida organisms. It can be used in the future to evaluate new antifungals and antifungal combinations and to study resistant strains. PMID:24566186

Ecology and distribution of recent planktonic foraminifera in eastern part of Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Jayalakshmy, K.V.; Kutty, M.K.

Thirty species of living planktonic foraminifera have been studied from 97 plankton tows collected from the eastern Arabian Sea with an accent on their ecological and distributional aspects. Species density is higher with less dominance in the deep...

Seasonal sediment dynamics shape temperate bedrock reef communities

Science.gov (United States)

Figurski, Jared D.; Freiwald, Jan; Lonhart, Steve I.; Storlazzi, Curt

2016-01-01

Mobilized seafloor sediment can impact benthic reef communities through burial, scour, and turbidity. These processes are ubiquitous in coastal oceans and, through their influence on the survival, fitness, and interactions of species, can alter the structure and function of benthic communities. In northern Monterey Bay, California, USA, as much as 30% of the seafloor is buried or exposed seasonally, making this an ideal location to test how subtidal temperate rocky reef communities vary in the presence and absence of chronic sediment-based disturbances. Designated dynamic plots were naturally inundated by sediment in summer (50 to 100% cover) and swept clean in winter, whereas designated stable plots remained free of sediment during our study. Multivariate analyses indicated significant differences in the structure of sessile and mobile communities between dynamic and stable reef habitats. For sessile species, community structure in disturbed plots was less variable in space and time than in stable plots due to the maintenance of an early successional state. In contrast, community structure of mobile species varied more in disturbed plots than in stable plots, reflecting how mobile species distribute in response to sediment dynamics. Some species were found only in these disturbed areas, suggesting that the spatial mosaic of disturbance could increase regional diversity. We discuss how the relative ability of species to tolerate disturbance at different life history stages and their ability to colonize habitat translate into community-level differences among habitats, and how this response varies between mobile and sessile communities.

Plankton as an indicator of the temporal variation of the Chernobyl fallout

International Nuclear Information System (INIS)

Ravera, O.; Giannoni, L.

1995-01-01

Here we describe the pattern of radionuclide activities (iodine-131; cesium-134; cesium-137; ruthenium-106) in net-plankton and water samples collected from two lakes in Northern Italy (Lake Monate and Lake Comabbio) during and after the presence in the area of the radioactive cloud from the Chernobyl accident: from 30 April to 3 September 1986. The results show that, because of its short lifespan, plankton is a good indicator of daily variations of environmental contamination. The contamination level of plankton depends on various factors, such as the speciation and biological role of the radionuclide, the community structure and chemical characteristics of the water

Life spans of planktonic foraminifers: New sight through sediment traps

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.; Saraswat, R.; Mazumder, A.

), indicated by black arrows are remarkably present for all three trap locations. (Modified after Curry et l.t 1992). 2002; Eguchi, Ujiie, Kawahata and Taira 2003), (ii) all the traps can not stop functioning simultaneously and that for the same time... estimates of the life spans of planktonic foraminifera based on extrapolation of lab culture observations. According to Be et al (1981), an inverse relationship exists between feeding frequency and survival time, and that planktonic foraminifers under...

Effects of the global changes on the aquatic ecosystems in West Europe - role of the plankton communities

International Nuclear Information System (INIS)

Souissi, S.

2007-01-01

Examination of long-term records of aquatic ecosystems has provided useful information to find out their major driving forces. Understanding the impact of climate change on these ecosystems, the management of their resources and the extrapolation between sites are the main scopes of actual and emerging studies. Such goals can be achieved by inter-site and inter-ecosystem comparisons. This approach was undertaken during our project which has the originality to tackle with marine and freshwater ecosystems. It allowed us to compile and validate several multi-decadal time series of planktonic and other physical driving forces at local and regional scales. Then, the same methodology based on the analysis of the variability of climate indices and biological data across several spatial scales was used. The different ecosystems analyzed here showed clear response to the North Atlantic climate variability. Although the local differences abrupt changes in community composition occurred in all ecosystems in the middle of the years 80. During this period there was also a major shift in climatic conditions during winter and early spring, suggesting an impact of climatic factors. Phenological changes were also observed in plankton communities in all sites. The consequences of the modifications of plankton dynamics on higher trophic levels were also showed. Fluctuations in plankton have resulted in long-term changes in cod recruitment in the North Sea (bottom-up control). On the other hand, both climate change and the improvement of trophic status in Geneva Lake favored the outbreak of whitefish during the years 90. Lower larval mortality and better recruitment are supposed to be linked to faster growth associated with warmer temperatures and better food conditions induced by better temporal overlap between larvae hatching and zooplankton development. (author)

Seasonal and annual variation in planktonic foraminiferal fluxes including warm period related El Niño in the northwestern North Pacific

Science.gov (United States)

Kuroyanagi, A.; Kawahata, H.; Nishi, H.; Honda, M. C.

2007-12-01

Planktonic foraminifera provide a record of the upper ocean environment through their species assemblage and individual tests. To investigate the relationship between foraminifera and oceanographic conditions and the impact of El Niño on foraminifera, we analyzed foraminiferal fluxes and relative abundances by using sediment trap samples collected biweekly at three sites in the northwestern North Pacific: Site 40N (39 °60'N, 165 °00'E), Site KNOT (43 °58'N, 155 °03'E), and Site 50N (50 °01'N, 165 °02'E) from 1998- 2001, a period that included an El Niño effect. Based on foraminiferal production and assemblage composition, we divided the sampling duration into several periods during which certain characteristic oceanographic properties were observed. These sampling periods were classified into five types (I-V) based upon four factors: 1) the predominant foraminiferal group, 2) total foraminiferal fluxes (TFFs), 3) organic matter (OM) fluxes, and 4) hydrographic conditions, which included sea surface temperature (SST) and thermal structure. Our results suggest that seasonal changes in foraminifera were closely related to water mass properties in addition to SST. If species compositions were the same, then water mass properties were the most important factors affecting the seasonal variation of foraminiferal abundance in the northwestern North Pacific. Although one of the major controlling factors for foraminiferal fluxes is food availability, the controlling factors for each type (types I-V) are different because of specific oceanographic situations, such as phytoplankton blooms, which result in an excess food supply for foraminifera. At Site KNOT in 1998, SST was remarkably high because of El Niño, and high surface temperatures and weak winds would have lowered nutrient supply and intensified water column stratification, resulting in the relatively low fluxes of total foraminifera, N. pachyderma, and G. bulloides, and the high fluxes of N. dutertrei that

Living planktonic foraminifera during the late summer monsoon period in the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Guptha, M.V.S.; Mohan, R.; Muralinath, A.S.

with deepening of the mixed layer, since this species preferentially dwells in nutrient-rich upwelling waters. The population density of planktonic foraminifera ranges between 31 and 185 specimens per 10@u-3@@m@u3@@. The low absolute numbers of planktonic...

Timing and severity of immunizing diseases in rabbits is controlled by seasonal matching of host and pathogen dynamics.

Science.gov (United States)

Wells, Konstans; Brook, Barry W; Lacy, Robert C; Mutze, Greg J; Peacock, David E; Sinclair, Ron G; Schwensow, Nina; Cassey, Phillip; O'Hara, Robert B; Fordham, Damien A

2015-02-06

Infectious diseases can exert a strong influence on the dynamics of host populations, but it remains unclear why such disease-mediated control only occurs under particular environmental conditions. We used 16 years of detailed field data on invasive European rabbits (Oryctolagus cuniculus) in Australia, linked to individual-based stochastic models and Bayesian approximations, to test whether (i) mortality associated with rabbit haemorrhagic disease (RHD) is driven primarily by seasonal matches/mismatches between demographic rates and epidemiological dynamics and (ii) delayed infection (arising from insusceptibility and maternal antibodies in juveniles) are important factors in determining disease severity and local population persistence of rabbits. We found that both the timing of reproduction and exposure to viruses drove recurrent seasonal epidemics of RHD. Protection conferred by insusceptibility and maternal antibodies controlled seasonal disease outbreaks by delaying infection; this could have also allowed escape from disease. The persistence of local populations was a stochastic outcome of recovery rates from both RHD and myxomatosis. If susceptibility to RHD is delayed, myxomatosis will have a pronounced effect on population extirpation when the two viruses coexist. This has important implications for wildlife management, because it is likely that such seasonal interplay and disease dynamics has a strong effect on long-term population viability for many species. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera

Directory of Open Access Journals (Sweden)

Shivshankar Pooja

2011-11-01

Full Text Available Abstract Background Streptococcus pneumoniae (the pneumococcus is the leading cause of otitis media, community-acquired pneumonia (CAP, sepsis, and meningitis. It is now evident that S. pneumoniae forms biofilms during nasopharyngeal colonization; the former which facilitates persistence, the latter, a prerequisite for subsequent development of invasive disease. Proteomic evaluation of S. pneumoniae suggests the antigen profile available for host-recognition is altered as a consequence of biofilm growth. This has potentially meaningful implications in regards to adaptive immunity and protection from disseminated disease. We therefore examined the antigen profile of biofilm and planktonic pneumococcal cell lysates, tested their reactivity with human convalescent sera and that generated against biofilm pneumococci, and examined whether immunization with biofilm pneumococci protected mice against infectious challenge. Results Biofilm pneumococci have dramatically altered protein profiles versus their planktonic counterparts. During invasive disease the humoral immune response is skewed towards the planktonic protein profile. Immunization with biofilm bacteria does not elicit a strong-cross-reactive humoral response against planktonic bacteria nor confer resistance against challenge with a virulent isolate from another serotype. We identified numerous proteins, including Pneumococcal serine-rich repeat protein (PsrP, which may serve as a protective antigens against both colonization and invasive disease. Conclusion Differential protein production by planktonic and biofilm pneumococci provides a potential explanation for why individuals remain susceptible to invasive disease despite previous colonization events. These findings also strongly suggest that differential protein production during colonization and disease be considered during the selection of antigens for any future protein vaccine.

Xylella fastidiosa differentially accumulates mineral elements in biofilm and planktonic cells.

Science.gov (United States)

Cobine, Paul A; Cruz, Luisa F; Navarrete, Fernando; Duncan, Daniel; Tygart, Melissa; De La Fuente, Leonardo

2013-01-01

Xylella fastidiosa is a bacterial plant pathogen that infects numerous plant hosts. Disease develops when the bacterium colonizes the xylem vessels and forms a biofilm. Inductively coupled plasma optical emission spectroscopy was used to examine the mineral element content of this pathogen in biofilm and planktonic states. Significant accumulations of copper (30-fold), manganese (6-fold), zinc (5-fold), calcium (2-fold) and potassium (2-fold) in the biofilm compared to planktonic cells were observed. Other mineral elements such as sodium, magnesium and iron did not significantly differ between biofilm and planktonic cells. The distribution of mineral elements in the planktonic cells loosely mirrors the media composition; however the unique mineral element distribution in biofilm suggests specific mechanisms of accumulation from the media. A cell-to-surface attachment assay shows that addition of 50 to 100 µM Cu to standard X. fastidiosa media increases biofilm, while higher concentrations (>200 µM) slow cell growth and prevent biofilm formation. Moreover cell-to-surface attachment was blocked by specific chelation of copper. Growth of X. fastidiosa in microfluidic chambers under flow conditions showed that addition of 50 µM Cu to the media accelerated attachment and aggregation, while 400 µM prevented this process. Supplementation of standard media with Mn showed increased biofilm formation and cell-to-cell attachment. In contrast, while the biofilm accumulated Zn, supplementation to the media with this element caused inhibited growth of planktonic cells and impaired biofilm formation. Collectively these data suggest roles for these minerals in attachment and biofilm formation and therefore the virulence of this pathogen.

Seasonal Dynamics of River Corridor Exchange Across the Continental United States

Science.gov (United States)

Gomez-Velez, J. D.; Harvey, J. W.; Scott, D.; Boyer, E. W.; Schmadel, N. M.

2017-12-01

River corridors store and convey mass and energy from landscapes to the ocean, altering water quality and ecosystem functioning at the local, reach, and watershed scales. As water moves through river corridors from headwaters streams to coastal estuaries, dynamic exchange between the river channel and its adjacent riparian, floodplain, and hyporheic zones, combined with ponded waters such as lakes and reservoirs, results in the emergence of hot spots and moments for biogeochemical transformations. In this work, we used the model Networks with EXchange and Subsurface Storage (NEXSS) to estimate seasonal variations in river corridor exchange fluxes and residence times along the continental United States. Using a simple routing scheme, we translate these estimates into a cumulative measure of river corridor connectivity at the watershed scale, differentiating the contributions of hyporheic zones, floodplains, and ponded waters. We find that the relative role of these exchange subsystems changes seasonally, driven by the intra-seasonal variability of discharge. In addition, we find that seasonal variations in discharge and the biogeochemical potential of hyporheic zones are out of phase. This behavior results in a significant reduction in hyporheic water quality functions during high flows and emphasizes the potential importance of reconnecting floodplains for managing water quality during seasonal high flows. Physical parameterizations of river corridor processes are critical to model and predict water quality and to sustainably manage water resources under present and future socio-economic and climatic conditions. Parsimonious models like NEXSS can play a key role in the design, implementation, and evaluation of sustainable management practices that target both water quantity and quality at the scale of the nation. This research is a product of the John Wesley Powell Center River Corridor Working Group.

The role of fire-return interval and season of burn in snag dynamics in a south Florida slash pine forest

Science.gov (United States)

Lloyd, John D.; Slater, Gary L.; Snyder, James R.

2012-01-01

Standing dead trees, or snags, are an important habitat element for many animal species. In many ecosystems, fire is a primary driver of snag population dynamics because it can both create and consume snags. The objective of this study was to examine how variation in two key components of the fire regime—fire-return interval and season of burn—affected population dynamics of snags. Using a factorial design, we exposed 1 ha plots, located within larger burn units in a south Florida slash pine (Pinus elliottii var. densa Little and Dorman) forest, to prescribed fire applied at two intervals (approximately 3-year intervals vs. approximately 6-year intervals) and during two seasons (wet season vs. dry season) over a 12- to 13-year period. We found no consistent effect of fire season or frequency on the density of lightly to moderately decayed or heavily decayed snags, suggesting that variation in these elements of the fire regime at the scale we considered is relatively unimportant in the dynamics of snag populations. However, our confidence in these findings is limited by small sample sizes, potentially confounding effects of unmeasured variation in fire behavior and effects (e.g., intensity, severity, synergy with drought cycles) and wide variation in responses within a treatment level. The generalizing of our findings is also limited by the narrow range of treatment levels considered. Future experiments incorporating a wider range of fire regimes and directly quantifying fire intensity would prove useful in identifying more clearly the role of fire in shaping the dynamics of snag populations.

Particulate matter and plankton dynamics in the Ross Sea Polynya of Terra Nova Bay during the Austral Summer 1997/98

Science.gov (United States)

Fonda Umani, S.; Accornero, A.; Budillon, G.; Capello, M.; Tucci, S.; Cabrini, M.; Del Negro, P.; Monti, M.; De Vittor, C.

2002-07-01

The structure and variability of the plankton community and the distribution and composition of suspended particulate matter, were investigated in the polynya of Terra Nova Bay (western Ross Sea) during the austral summer 1997/1998, with the ultimate objective of understanding the trophic control of carbon export from the upper water column. Sampling was conducted along a transect parallel to the shore, near the retreating ice edge at the beginning of December, closer to the coast at the beginning of February, and more offshore in late February. Hydrological casts and water sampling were performed at several depths to measure total particulate matter (TPM), particulate organic carbon (POC), biogenic silica (BSi), chlorophyll a (Chl a) and phaeopigment (Phaeo) concentrations. Subsamples were taken for counting autotrophic and heterotrophic pico- and nanoplankton and to assess the abundance and composition of microphyto- and microzooplankton. Statistical analysis identified two major groups of samples: the first included the most coastal surface samples of early December, characterized by the prevalence of autotrophic nanoplankton biomass; the second included all the remaining samples and was dominated by microphytoplankton. With regard to the relation of the plankton community composition to the biogenic suspended and sinking material, we identified the succession of three distinct periods. In early December Phaeocystis dominated the plankton assemblage in the well-mixed water column, while at the retreating ice-edge a bloom of small diatoms (ND) was developing in the lens of superficial diluted water. Concentrations of biogenic particulates were generally low and confined to the uppermost layer. The very low downward fluxes, the near absence of faecal pellets and the high Chl a/Phaeo ratios suggested that the herbivorous food web was not established yet or, at least, was not working efficiently. In early February the superficial pycnocline and the increased water

Seasonal Prediction of Regional Surface Air Temperature and First-flowering Date in South Korea using Dynamical Downscaling

Science.gov (United States)

Ahn, J. B.; Hur, J.

2015-12-01

The seasonal prediction of both the surface air temperature and the first-flowering date (FFD) over South Korea are produced using dynamical downscaling (Hur and Ahn, 2015). Dynamical downscaling is performed using Weather Research and Forecast (WRF) v3.0 with the lateral forcing from hourly outputs of Pusan National University (PNU) coupled general circulation model (CGCM) v1.1. Gridded surface air temperature data with high spatial (3km) and temporal (daily) resolution are obtained using the physically-based dynamical models. To reduce systematic bias, simple statistical correction method is then applied to the model output. The FFDs of cherry, peach and pear in South Korea are predicted for the decade of 1999-2008 by applying the corrected daily temperature predictions to the phenological thermal-time model. The WRF v3.0 results reflect the detailed topographical effect, despite having cold and warm biases for warm and cold seasons, respectively. After applying the correction, the mean temperature for early spring (February to April) well represents the general pattern of observation, while preserving the advantages of dynamical downscaling. The FFD predictabilities for the three species of trees are evaluated in terms of qualitative, quantitative and categorical estimations. Although FFDs derived from the corrected WRF results well predict the spatial distribution and the variation of observation, the prediction performance has no statistical significance or appropriate predictability. The approach used in the study may be helpful in obtaining detailed and useful information about FFD and regional temperature by accounting for physically-based atmospheric dynamics, although the seasonal predictability of flowering phenology is not high enough. Acknowledgements This work was carried out with the support of the Rural Development Administration Cooperative Research Program for Agriculture Science and Technology Development under Grant Project No. PJ009953 and

Influence of Seasonal Food Availability on the Dynamics of Seabird Feeding Flocks at a Coastal Upwelling Area.

Science.gov (United States)

Anguita, Cristóbal; Simeone, Alejandro

2015-01-01

The formation of multi-species feeding flocks (MSFFs) through visual recruitment is considered an important strategy for obtaining food in seabirds and its functionality has been ascribed to enhanced foraging efficiency. Its use has been demonstrated in much of the world's oceans and includes numerous species. However, there is scant information on the temporal stability of the composition and abundance of MSFFs as well as the effect of seasonal food availability on their dynamics. Between July 2006 and September 2014, we conducted monthly at-sea seabird counts at Valparaiso Bay (32°56' to 33°01'S, 71°36' to 71°46'W) within the area of influence of the Humboldt Current in central Chile. This area is characterized by a marked seasonality in primary and secondary production associated with upwelling, mainly during austral spring-summer. Based on studies that provide evidence that flocking is most frequent when food is both scarce and patchy, we hypothesized that seabird MSFF attributes (i.e. frequency of occurrence, abundance and composition) will be modified according to the seasonal availability of food. Using generalized linear models (GLMs), our results show that the contrasting seasonality in food availability of the study area (using chlorophyll-a concentration as a proxy) had no significant influence on MSFF attributes, sparsely explaining their variations (P>0.05). Rather than seasonal food availability, the observed pattern for MSFF attributes at Valparaiso Bay suggests a substantial influence of reproductive and migratory (boreal and austral migrants) habits of birds that modulates MSFF dynamics consistently throughout the whole year in this highly variable and patchy environment. We highlight the importance of visual recruitment as a mechanism by which migratory and resident birds interact. This would allow them to reduce resource unpredictability, which in turn has a major impact on structuring seabird's MSFF dynamics.

Influence of Seasonal Food Availability on the Dynamics of Seabird Feeding Flocks at a Coastal Upwelling Area.

Directory of Open Access Journals (Sweden)

Cristóbal Anguita

Full Text Available The formation of multi-species feeding flocks (MSFFs through visual recruitment is considered an important strategy for obtaining food in seabirds and its functionality has been ascribed to enhanced foraging efficiency. Its use has been demonstrated in much of the world's oceans and includes numerous species. However, there is scant information on the temporal stability of the composition and abundance of MSFFs as well as the effect of seasonal food availability on their dynamics. Between July 2006 and September 2014, we conducted monthly at-sea seabird counts at Valparaiso Bay (32°56' to 33°01'S, 71°36' to 71°46'W within the area of influence of the Humboldt Current in central Chile. This area is characterized by a marked seasonality in primary and secondary production associated with upwelling, mainly during austral spring-summer. Based on studies that provide evidence that flocking is most frequent when food is both scarce and patchy, we hypothesized that seabird MSFF attributes (i.e. frequency of occurrence, abundance and composition will be modified according to the seasonal availability of food. Using generalized linear models (GLMs, our results show that the contrasting seasonality in food availability of the study area (using chlorophyll-a concentration as a proxy had no significant influence on MSFF attributes, sparsely explaining their variations (P>0.05. Rather than seasonal food availability, the observed pattern for MSFF attributes at Valparaiso Bay suggests a substantial influence of reproductive and migratory (boreal and austral migrants habits of birds that modulates MSFF dynamics consistently throughout the whole year in this highly variable and patchy environment. We highlight the importance of visual recruitment as a mechanism by which migratory and resident birds interact. This would allow them to reduce resource unpredictability, which in turn has a major impact on structuring seabird's MSFF dynamics.

Seasonal PCB bioaccumulation in an arctic marine ecosystem: a model analysis incorporating lipid dynamics, food-web productivity and migration.

Science.gov (United States)

Laender, Frederik De; Oevelen, Dick Van; Frantzen, Sylvia; Middelburg, Jack J; Soetaert, Karline

2010-01-01

Primary production and species' lipid contents in Arctic ecosystems are notoriously seasonal. Additionally, seasonal migration patterns of fish may alter prey availability and thus diet. Taking the southern Barents Sea as a study region and PCBs as model contaminants, we examined to what extent each of these factors cause bioaccumulation in fish to change throughout the year. Data on physiology and standing stocks of multiple trophic levels were used to estimated season-specific carbon budgets and by inference also corresponding values for food ingestion and production of cod, capelin, and herring. When combining these values with Arctic lipid dynamics for bioaccumulation model parameter setting, we predicted bioaccumulation factors (BAFs) that were in good agreement with BAFs for cod and capelin observed between 1998 and 2008. BAFs in all fish were 10 times lower in summer than in spring and fall/winter and were mainly driven by lipid dynamics. Trophic magnification factors (TMFs: increase in BAF per unit increase in trophic level as derived from our carbon budgets) were highest for PCB 153 during spring (2.3-2.4) and lowest for PCB 52 in summer and fall/winter (1.5-1.6) and were driven by seasonal shifts in trophic level and lipid dynamics.

Added value of dynamical downscaling of winter seasonal forecasts over North America

Science.gov (United States)

Tefera Diro, Gulilat; Sushama, Laxmi

2017-04-01

Skillful seasonal forecasts have enormous potential benefits for socio-economic sectors that are sensitive to weather and climate conditions, as the early warning routines could reduce the vulnerability of such sectors. In this study, individual ensemble members of the ECMWF global ensemble seasonal forecasts are dynamically downscaled to produce ensemble of regional seasonal forecasts over North America using the fifth generation Canadian Regional Climate Model (CRCM5). CRCM5 forecasts are initialized on November 1st of each year and are integrated for four months for the 1991-2001 period at 0.22 degree resolution to produce a one-month lead-time forecast. The initial conditions for atmospheric variables are obtained from ERA-Interim reanalysis, whereas the initial conditions for land surface are obtained from a separate ERA-interim driven CRCM5 simulation with spectral nudging applied to the interior domain. The global and regional ensemble forecasts were then verified to investigate the skill and economic benefits of dynamical downscaling. Results indicate that both the global and regional climate models produce skillful precipitation forecast over the southern Great Plains and eastern coasts of the U.S and skillful temperature forecasts over the northern U.S. and most of Canada. In comparison to ECMWF forecasts, CRCM5 forecasts improved the temperature forecast skill over most part of the domain, but the improvements for precipitation is limited to regions with complex topography, where it improves the frequency of intense daily precipitation. CRCM5 forecast also yields a better economic value compared to ECMWF precipitation forecasts, for users whose cost to loss ratio is smaller than 0.5.

Seasonal dynamics of ant community structure in the Moroccan Argan Forest.

Science.gov (United States)

El Keroumi, Abderrahim; Naamani, Khalid; Soummane, Hassna; Dahbi, Abdallah

2012-01-01

In this study we describe the structure and composition of ant communities in the endemic Moroccan Argan forest, using pitfall traps sampling technique throughout the four seasons between May 2006 and February 2007. The study focused on two distinct climatic habitats within the Essaouira Argan forest, a semi-continental site at Lahssinate, and a coastal site at Boutazarte. Thirteen different ant species were identified, belonging to seven genera. Monomorium subopacum Smith and Tapinoma simrothi Krausse-Heldrungen (Hymenoptera: Formicidae) were the most abundant and behaviorally dominant ant species in the arganeraie. In addition, more specimens were captured in the semi-continental site than in the coastal area. However, no significant difference was observed in species richness, evenness, or diversity between both sites. Composition and community structure showed clear seasonal dynamics. The number of species, their abundance, their diversity, and their evenness per Argan tree were significantly dissimilar among seasons. The richness (except between summer and autumn), and the abundance and the evenness of ant species among communities, showed a significant difference between the dry period (summer and spring) and the rainy period (winter and autumn). Higher abundance and richness values occurred in the dry period of the year. Ant species dominance and seasonal climatic variations in the arganeraie might be among the main factors affecting the composition, structure, and foraging activity of ant communities. This study, together with recent findings on ant predation behavior below Argan trees, highlights the promising use of dominant ant species as potential agents of Mediterranean fruit fly bio-control in the Argan forest and surrounding ecosystems.

Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 14579

NARCIS (Netherlands)

Wijman, Janneke; Mols, M.; Tempelaars, Marcel; Abee, Tjakko

2015-01-01

Planktonic and biofilm cells of Bacillus cereus ATCC 14579 and ATCC 10987 were studied using microscopy and transcriptome analysis. By microscopy, clear differences could be observed between biofilm and planktonic cells as well as between the two strains. By using hierarchical clustering of the

Comparative transcriptome analysis of biofilm and planktonic cells of Bacillus cereus ATCC 10987

NARCIS (Netherlands)

Wijman, Janneke; Mols, M.; Tempelaars, Marcel; Abee, Tjakko

2015-01-01

Planktonic and biofilm cells of Bacillus cereus ATCC 14579 and ATCC 10987 were studied using microscopy and transcriptome analysis. By microscopy, clear differences could be observed between biofilm and planktonic cells as well as between the two strains. By using hierarchical clustering of the

Effect of Prophylactic Ankle-Brace Use During a High School Competitive Basketball Season on Dynamic Postural Control.

Science.gov (United States)

Crockett, Nathan J; Sandrey, Michelle A

2015-08-01

Few studies have evaluated the long-term effects of prophylactic ankle-brace use during a sport season. To determine the effects of prophylactic ankle-brace use during a high school basketball season on dynamic postural control and functional tests. Prospective repeated-measures design. High school athletic facility. 21 healthy high school basketball athletes (13 girls, 8 boys). The order of testing was randomized using the Star Excursion Balance Test (SEBT) for posteromedial (PM), medial (M), and anteromedial (AM) directions and 3 functional tests (FT) consisting of the single-leg crossover hop, single-leg vertical jump, and the single-leg 6-m hop for time at pre-, mid-, and postseason. After pretesting, the ankle brace was worn on both limbs during the entire 16-wk competitive basketball season. SEBT for PM, M, and AM and 3 single-leg FTs. Dynamic postural control using the SEBT and the 3 FTs improved over time, notably from pretest to posttest. The left limb was different from the right limb during the single-leg vertical jump. Effect sizes were large for pretest to posttest for the 3 SEBT directions and 2 of the 3 FTs. The 16-wk basketball prophylactic ankle-brace intervention significantly improved dynamic postural control and single-limb FTs over time.

Spatiotemporal Dynamics of Surface Water Extent from Three Decades of Seasonally Continuous Landsat Time Series at Subcontinental Scale

Science.gov (United States)

Tulbure, M. G.; Broich, M.; Stehman, Stephen V.

2016-06-01

Surface water is a critical resource in semi-arid areas. The Murray-Darling Basin (MDB) of Australia, one of the largest semi-arid basins in the world is aiming to set a worldwide example of how to balance multiple interests (i.e. environment, agriculture and urban use), but has suffered significant water shrinkages during the Millennium Drought (1999-2009), followed by extensive flooding. Baseline information and systematic quantification of surface water (SW) extent and flooding dynamics in space and time are needed for managing SW resources across the basin but are currently lacking. To synoptically quantify changes in SW extent and flooding dynamics over MDB, we used seasonally continuous Landsat TM and ETM+ data (1986 - 2011) and generic machine learning algorithms. We further mapped flooded forest at a riparian forest site that experienced severe tree dieback due to changes in flooding regime. We used a stratified sampling design to assess the accuracy of the SW product across time. Accuracy assessment yielded an overall classification accuracy of 99.94%, with producer's and user's accuracy of SW of 85.4% and 97.3%, respectively. Overall accuracy was the same for Landsat 5 and 7 data but user's and producer's accuracy of water were higher for Landsat 7 than 5 data and stable over time. Our validated results document a rapid loss in SW bodies. The number, size, and total area of SW showed high seasonal variability with highest numbers in winter and lowest numbers in summer. SW extent per season per year showed high interannual and seasonal variability, with low seasonal variability during the Millennium Drought. Examples of current uses of the new dataset will be presented and include (1) assessing ecosystem response to flooding with implications for environmental water releases, one of the largest investment in environment in Australia; (2) quantifying drivers of SW dynamics (e.g. climate, human activity); (3) quantifying changes in SW dynamics and

Biodiversity effects on resource use efficiency and community turnover of plankton in Lake Nansihu, China.

Science.gov (United States)

Tian, Wang; Zhang, Huayong; Zhang, Jian; Zhao, Lei; Miao, Mingsheng; Huang, Hai

2017-04-01

The relationship between biodiversity and ecosystem functioning is a central issue in ecology, especially in aquatic ecosystems due to the ecophysiological characteristics of plankton. Recently, ecologists have obtained conflicting conclusions while analyzing the influence of species diversity on plankton resource use efficiency (RUE) and community turnover. In this study, both phytoplankton and zooplankton communities were investigated seasonally from 2011 to 2013 in Lake Nansihu, a meso-eutrophic and recovering lake in China. The effects of phytoplankton diversity on RUE of phytoplankton (RUE PP ), zooplankton (RUE ZP ), and community turnover were analyzed. Results showed that both phytoplankton species richness and evenness were positively correlated with RUE PP . RUE ZP had a negative relationship with phytoplankton species richness, but a weak unimodal relationship with phytoplankton evenness. Cyanobacteria community had the opposite influence on RUE PP and RUE ZP . Thus, cyanobacteria dominance will benefit RUE PP in eutrophic lakes, but the growth and reproduction of zooplankton are greatly limited. The strong negative relationship between total phosphorus and RUE ZP confirmed these results. Phytoplankton community turnover tended to decrease with increasing phytoplankton evenness, which was consistent with most previous studies. The correlation coefficient between phytoplankton species richness and community turnover was negative, but not significant (p > 0.05). Therefore, phytoplankton community turnover was more sensitive to the variation of evenness than species richness. These results will be helpful in understanding the effects of species diversity on ecosystem functioning in aquatic ecosystems.

Assessment of Nuclear Power Plant Impact to the Environment: Effect of Sea Water Temperature Increase on Plankton Population

International Nuclear Information System (INIS)

Tjahaja, I P; Pujadi; Supriharyono; Aviati, N; Ruswahyun; Busono, H

1996-01-01

Research to study the effect of sea water temperature increase on plankton population had been carried out to predict nuclear power plant impact to the environment. Plankton collected from Jepara waters, Muria Peninsula, was grown on growth medium i.e. sea water enriched with silicate fertilizer. Plankton growth was maintained at temperature varied from 34oC to 46oC and the amount of plankton individu was counted twice a day until it was reduced about 95%. The results showed that the reduction of amount of plankton individu occurred on the medium with temperature above the ambient temperature (34oC). The rate of reduction is linear to the temperature increase. There is no plankton survived at temperature above 40oC for more than 24 hours

Xylella fastidiosa differentially accumulates mineral elements in biofilm and planktonic cells.

Directory of Open Access Journals (Sweden)

Paul A Cobine

Full Text Available Xylella fastidiosa is a bacterial plant pathogen that infects numerous plant hosts. Disease develops when the bacterium colonizes the xylem vessels and forms a biofilm. Inductively coupled plasma optical emission spectroscopy was used to examine the mineral element content of this pathogen in biofilm and planktonic states. Significant accumulations of copper (30-fold, manganese (6-fold, zinc (5-fold, calcium (2-fold and potassium (2-fold in the biofilm compared to planktonic cells were observed. Other mineral elements such as sodium, magnesium and iron did not significantly differ between biofilm and planktonic cells. The distribution of mineral elements in the planktonic cells loosely mirrors the media composition; however the unique mineral element distribution in biofilm suggests specific mechanisms of accumulation from the media. A cell-to-surface attachment assay shows that addition of 50 to 100 µM Cu to standard X. fastidiosa media increases biofilm, while higher concentrations (>200 µM slow cell growth and prevent biofilm formation. Moreover cell-to-surface attachment was blocked by specific chelation of copper. Growth of X. fastidiosa in microfluidic chambers under flow conditions showed that addition of 50 µM Cu to the media accelerated attachment and aggregation, while 400 µM prevented this process. Supplementation of standard media with Mn showed increased biofilm formation and cell-to-cell attachment. In contrast, while the biofilm accumulated Zn, supplementation to the media with this element caused inhibited growth of planktonic cells and impaired biofilm formation. Collectively these data suggest roles for these minerals in attachment and biofilm formation and therefore the virulence of this pathogen.

Examining secular trend  and seasonality in count data using dynamic generalized linear modelling

DEFF Research Database (Denmark)

Lundbye-Christensen, Søren; Dethlefsen, Claus; Gorst-Rasmussen, Anders

series regression model for Poisson counts. It differs in allowing the regression coefficients to vary gradually over time in a random fashion. Data  In the period January 1980 to 1999, 17,989 incidents of acute myocardial infarction were recorded in the county of Northern Jutland, Denmark. Records were......Aims  Time series of incidence counts often show secular trends and seasonal patterns. We present a model for incidence counts capable of handling a possible gradual change in growth rates and seasonal patterns, serial correlation and overdispersion. Methods  The model resembles an ordinary time...... updated daily. Results  The model with a seasonal pattern and an approximately linear trend was fitted to the data, and diagnostic plots indicate a good model fit. The analysis with the dynamic model revealed peaks coinciding with influenza epidemics. On average the peak-to-trough ratio is estimated...

Abundance of plankton population densities in relation to bottom soil textural types in aquaculture ponds

Directory of Open Access Journals (Sweden)

F. Siddika

2012-06-01

Full Text Available Plankton is an important food item of fishes and indicator for the productivity of a water body. The present study was conducted to evaluate the effects of bottom soil textural conditions on abundance of plankton in aquaculture pond. The experiment was carried out using three treatments, i.e., ponds bottom with sandy loam (T1, with loam (T2 and with clay loam (T3. The ranges of water quality parameters analyzed were suitable for the growth of plankton during the experimental period. Similarly, chemical properties of soil were also within suitable ranges and every parameter showed higher ranges in T2. A total 20 genera of phytoplankton were recorded belonged to Chlorophyceae (7, Cyanophyceae (5, Bacillariophyceae (5, Euglenophyceae (2 and Dinophyceae (1. On the other hand, total 13 genera of zooplankton were recorded belonged to Crustacea (7 and Rotifera (6. The highest ranges of phytoplankton and zooplankton densities were found in T2 where low to medium-type bloom was observed during the study period. Consequently, the mean abundance of plankton (phytoplankton and zooplankton density was significantly highest in T2. The highest abundance of plankton in the T2 indicated that pond bottom with loamy soil is suitable for the growth and production of plankton in aquaculture ponds.

The onset of the 'Ordovician Plankton Revolution' in the late Cambrian

DEFF Research Database (Denmark)

Servais, Thomas; Perrier, Vincent; Danelian, Taniel

2016-01-01

Positive Carbon Isotope Excursion δ13Ccarb (SPICE) event in the late Cambrian (Paibian Stage, Furongian Series) has been related to a major increase in atmospheric O2 (from 10-18% to some 20 - 29%) and to increased oceanic nutrient availability. Here we analyze the diversification of the planktonic groups...... during the late Cambrian and Early Ordovician, in particular in relation to the SPICE event. Our analyses include the changing diversities of the phytoplankton (acritarchs), diverse groups of zooplankton (e.g., radiolarians, graptolites, chitinozoans) and the switch to a planktonic mode of life of fossil...... of the different planktonic organisms can be related directly to the SPICE event. However, a long term (10-20millionyears) oxygenation pulse related to the SPICE event might have fuelled the explosion of phytoplankton diversity observed in the latest Cambrian-Early Ordovician that led to completely modified...

The continuous plankton recorder survey: A long-term, basin-scale oceanic time series

Science.gov (United States)

Gamble, John C.; Hunt, Harold G.

1992-01-01

In the 1920s, before the advent of echo sounders, fishery biologists were greatly concerned with assisting the fisherman to locate schools of pelagic fish. One of the approaches they developed was to relate the distribution of the planktonic food organisms to the presence of the schools of predators such as herring (Clupea harengus). The British planktologist, Alister Hardy, who had already carried out extensive studies on the feeding preferences of herring (Hardy, 1926a), initiated a program to examine the fishermen's contention that herring schools avoided 'green', i.e., phytoplankton-rich, water but could be correlated with high concentrations of zooplankton. This practical program was centered on the use of a specially developed instrument, the 'Plankton Indicator', designed to be used by the fisherman to assist in the search for suitable waters. It had limited success in its main aim but, as a collecting device, it embodied several profoundly important features. It was a simple instrument which was robust enough to be deployed and recovered by the crew of commercial vessels (in this case fishing vessels) while they were underway. The Indicator however, was no more than a high speed net which integrated the plankton over the area of sampling, but Hardy had also become interested in describing the patchiness of planktonic populations. He thus developed the Continuous Plankton Recorder (CPR) where he substituted the fixed filter screen of the Indicator by a continually moving length of silk mesh. The screen traversed at constant speed across the path of the incoming water and the trapped organisms were retained in place by sandwiching beneath an additional second mesh screen. Thus, knowing the speed of the towing vessel and the shooting and hauling positions, the spatial patterns of the plankton could be determined. Hardy took the first CPR to the Antarctic where he used it in the Southern Atlantic (Hardy, 1926b) and later deployed it in the North Sea to make

Factors Affecting Catalase Expression in Pseudomonas aeruginosa Biofilms and Planktonic Cells

OpenAIRE

Frederick, Jesse R.; Elkins, James G.; Bollinger, Nikki; Hassett, Daniel J.; McDermott, Timothy R.

2001-01-01

Previous work with Pseudomonas aeruginosa showed that catalase activity in biofilms was significantly reduced relative to that in planktonic cells. To better understand biofilm physiology, we examined possible explanations for the differential expression of catalase in cells cultured in these two different conditions. For maximal catalase activity, biofilm cells required significantly more iron (25 μM as FeCl3) in the medium, whereas planktonic cultures required no addition of iron. However, ...

Bacteriophage-antibiotic synergism to control planktonic and biofilm ...

African Journals Online (AJOL)

Bacteriophage-antibiotic synergism to control planktonic and biofilm producing clinical isolates of Pseudomonas aeruginosa. Amina Amal Mahmoud Nouraldin, Manal Mohammad Baddour, Reem Abdel Hameed Harfoush, Sara AbdelAziz Mohamed Essa ...

Microbial plankton communities in the coastal southeastern Black Sea: biomass, composition and trophic interactions

Directory of Open Access Journals (Sweden)

Ulgen Aytan

2018-04-01

Full Text Available Summary: We investigated biomass and composition of the pico-, nano- and microplankton communities in a coastal station of the southeastern Black Sea during 2011. We also examined trophic interactions within these communities from size-fractionated dilution experiments in February, June and December. Autotrophic and heterotrophic biomasses showed similar seasonal trends, with a peak in June, but heterotrophs dominated throughout the year. Autotrophic biomass was mainly comprised by nanoflagellates and diatoms in the first half of the year, and by dinoflagellates and Synechococcus spp. in the second half. Heterotrophic biomass was mostly dominated by heterotrophic bacteria, followed by nanoflagellates and microzooplankton. Dilution experiments suggest that nano- and microzooplankton were significant consumers of autotrophs and heterotrophic bacteria. More than 100% of bacterial production was consumed by grazers in all experiments, while 46%, 21% and 30% of daily primary production were consumed in February, June and December, respectively. In February, autotrophs were the main carbon source, but in December, it was heterotrophic bacteria. An intermediate situation was observed in June, with similar carbon flows from autotrophs and heterotrophic bacteria. Size-fraction dilution experiments suggested that heterotrophic nanoflagellates are an important link between the high heterotrophic bacterial biomass and microzooplankton. In summary, these results indicate that nano- and microzooplankton were responsible for comprising a significant fraction of total microbial plankton biomass, standing stocks, growth and grazing processes. This suggests that in 2011, the microbial food web was an important compartment of the planktonic food web in the coastal southeastern Black Sea. Keywords: Phytoplankton, Microzooplankton, Carbon biomass, Microbial food web, Grazing, Black Sea

Seasonal differences in extinction and colonization drive occupancy dynamics of an imperilled amphibian.

Directory of Open Access Journals (Sweden)

Lea A Randall

Full Text Available A detailed understanding of the population dynamics of many amphibian species is lacking despite concerns about declining amphibian biodiversity and abundance. This paper explores temporal patterns of occupancy and underlying extinction and colonization dynamics in a regionally imperiled amphibian species, the Northern leopard frog (Lithobates pipiens in Alberta. Our study contributes to elucidating regional occupancy dynamics at northern latitudes, where climate extremes likely have a profound effect on seasonal occupancy. The primary advantage of our study is its wide geographic scale (60,000 km2 and the use of repeat visual surveys each spring and summer from 2009-2013. We find that occupancy varied more dramatically between seasons than years, with low spring and higher summer occupancy. Between spring and summer, colonization was high and extinction low; inversely, colonization was low and extinction high over the winter. The dynamics of extinction and colonization are complex, making conservation management challenging. Our results reveal that Northern leopard frog occupancy was constant over the last five years and thus there is no evidence of decline or recovery within our study area. Changes to equilibrium occupancy are most sensitive to increasing colonization in the spring or declining extinction in the summer. Therefore, conservation and management efforts should target actions that are likely to increase spring colonization; this could be achieved through translocations or improving the quality or access to breeding habitat. Because summer occupancy is already high, it may be difficult to improve further. Nevertheless, summer extinction could be reduced by predator control, increasing water quality or hydroperiod of wetlands, or increasing the quality or quantity of summer habitat.

Seasonal differences in extinction and colonization drive occupancy dynamics of an imperilled amphibian.

Science.gov (United States)

Randall, Lea A; Smith, Des H V; Jones, Breana L; Prescott, David R C; Moehrenschlager, Axel

2015-01-01

A detailed understanding of the population dynamics of many amphibian species is lacking despite concerns about declining amphibian biodiversity and abundance. This paper explores temporal patterns of occupancy and underlying extinction and colonization dynamics in a regionally imperiled amphibian species, the Northern leopard frog (Lithobates pipiens) in Alberta. Our study contributes to elucidating regional occupancy dynamics at northern latitudes, where climate extremes likely have a profound effect on seasonal occupancy. The primary advantage of our study is its wide geographic scale (60,000 km2) and the use of repeat visual surveys each spring and summer from 2009-2013. We find that occupancy varied more dramatically between seasons than years, with low spring and higher summer occupancy. Between spring and summer, colonization was high and extinction low; inversely, colonization was low and extinction high over the winter. The dynamics of extinction and colonization are complex, making conservation management challenging. Our results reveal that Northern leopard frog occupancy was constant over the last five years and thus there is no evidence of decline or recovery within our study area. Changes to equilibrium occupancy are most sensitive to increasing colonization in the spring or declining extinction in the summer. Therefore, conservation and management efforts should target actions that are likely to increase spring colonization; this could be achieved through translocations or improving the quality or access to breeding habitat. Because summer occupancy is already high, it may be difficult to improve further. Nevertheless, summer extinction could be reduced by predator control, increasing water quality or hydroperiod of wetlands, or increasing the quality or quantity of summer habitat.

Research highlights: impacts of microplastics on plankton.

Science.gov (United States)

Lin, Vivian S

2016-02-01

Each year, millions of metric tons of the plastic produced for food packaging, personal care products, fishing gear, and other human activities end up in lakes, rivers, and the ocean. The breakdown of these primary plastics in the environment results in microplastics, small fragments of plastic typically less than 1-5 mm in size. These synthetic particles have been detected in all of the world's oceans and also in many freshwater systems, accumulating in sediment, on shorelines, suspended in surface waters, and being ingested by plankton, fish, birds, and marine mammals. While the occurrence of plastics in surface waters has been surveyed in a number of studies, the impacts of microplastics on marine organisms are still being elucidated. This highlight features three recent publications that explore the interactions of microplastics with planktonic organisms to clarify the effects of these pollutants on some of the ocean's smallest and most important inhabitants.

Seasonal dynamics of ectomycorrhizal fungus assemblages on oak seedlings in the southeastern Appalachian Mountains

Science.gov (United States)

John F. Walker; Orson K. Jr. Miller; Jonathan L. Horton

2008-01-01

The potential for seasonal dynamics in ectomycorrhizal (EM) fungal assemblages has important implications for the ecology of both the host trees and the fungal associates. We compared EM fungus distributions on root systems of out-planted oak seedlings at two sites in mixed southeastern Appalachian Mountain forests at the Coweeta Hydrologic Laboratory in North Carolina...

Demand for seasonal gas storage in northwest Europe until 2030. Simulation results with a dynamic model

International Nuclear Information System (INIS)

De Joode, J.; Oezdemir, Oe.

2010-01-01

The fact that depletion of indigenous gas production increases gas import dependency is widely known and accepted. However, there is considerable less attention for the implications of indigenous resource depletion for the provision of seasonal flexibility. The traditionally largest source of seasonal flexibility in Europe is indigenous gas production, mainly based in the Netherlands and the United Kingdom. With the depletion of indigenous sources the market increasingly needs to rely on other sources for seasonal flexibility, such as gas storage facilities. We investigate the future need for gas storage as a source for seasonal flexibility provision using a dynamic gas market model (GASTALE) in which different potential sources for seasonal flexibility - gas production, imports via pipeline, LNG imports and storage facilities - compete with each other in a market-based environment. The inclusion of seasonal flexibility properties in a gas market model allows a more complex analysis of seasonal flexibility issues than previously documented in literature. This is demonstrated in an analysis of the future demand for gas storage in northwestern Europe until 2030. Our results indicate that there is substantial need for additional gas storage facilities and thus supports current project proposals for new investment in gas storage facilities. (author)

The Role of Stream Water Carbon Dynamics and Export in the Carbon Balance of a Tropical Seasonal Rainforest, Southwest China

Science.gov (United States)

Zhou, Wen-Jun; Zhang, Yi-Ping; Schaefer, Douglas A.; Sha, Li-Qing; Deng, Yun; Deng, Xiao-Bao; Dai, Kai-Jie

2013-01-01

A two-year study (2009 ∼ 2010) was carried out to investigate the dynamics of different carbon (C) forms, and the role of stream export in the C balance of a 23.4-ha headwater catchment in a tropical seasonal rainforest at Xishuangbanna (XSBN), southwest China. The seasonal volumetric weighted mean (VWM) concentrations of total inorganic C (TIC) and dissolved inorganic C (DIC) were higher, and particulate inorganic C (PIC) and organic C (POC) were lower, in the dry season than the rainy season, while the VWM concentrations of total organic C (TOC) and dissolved organic C (DOC) were similar between seasons. With increased monthly stream discharge and stream water temperature (SWT), only TIC and DIC concentrations decreased significantly. The most important C form in stream export was DIC, accounting for 51.8% of the total C (TC) export; DOC, POC, and PIC accounted for 21.8%, 14.9%, and 11.5% of the TC export, respectively. Dynamics of C flux were closely related to stream discharge, with the greatest export during the rainy season. C export in the headwater stream was 47.1 kg C ha−1 yr−1, about 2.85% of the annual net ecosystem exchange. This finding indicates that stream export represented a minor contribution to the C balance in this tropical seasonal rainforest. PMID:23437195

The role of stream water carbon dynamics and export in the carbon balance of a tropical seasonal rainforest, southwest China.

Directory of Open Access Journals (Sweden)

Wen-Jun Zhou

Full Text Available A two-year study (2009 ~ 2010 was carried out to investigate the dynamics of different carbon (C forms, and the role of stream export in the C balance of a 23.4-ha headwater catchment in a tropical seasonal rainforest at Xishuangbanna (XSBN, southwest China. The seasonal volumetric weighted mean (VWM concentrations of total inorganic C (TIC and dissolved inorganic C (DIC were higher, and particulate inorganic C (PIC and organic C (POC were lower, in the dry season than the rainy season, while the VWM concentrations of total organic C (TOC and dissolved organic C (DOC were similar between seasons. With increased monthly stream discharge and stream water temperature (SWT, only TIC and DIC concentrations decreased significantly. The most important C form in stream export was DIC, accounting for 51.8% of the total C (TC export; DOC, POC, and PIC accounted for 21.8%, 14.9%, and 11.5% of the TC export, respectively. Dynamics of C flux were closely related to stream discharge, with the greatest export during the rainy season. C export in the headwater stream was 47.1 kg C ha(-1 yr(-1, about 2.85% of the annual net ecosystem exchange. This finding indicates that stream export represented a minor contribution to the C balance in this tropical seasonal rainforest.

Seasonal and interannual dynamics of soil microbial biomass and available nitrogen in an alpine meadow in the eastern part of Qinghai-Tibet Plateau, China

Science.gov (United States)

Xu, Bo; Wang, Jinniu; Wu, Ning; Wu, Yan; Shi, Fusun

2018-01-01

Soil microbial activity varies seasonally in frozen alpine soils during cold seasons and plays a crucial role in available N pool accumulation in soil. The intra- and interannual patterns of microbial and nutrient dynamics reflect the influences of changing weather factors, and thus provide important insights into the biogeochemical cycles and ecological functions of ecosystems. We documented the seasonal and interannual dynamics of soil microbial and available N in an alpine meadow in the eastern part of Qinghai-Tibet Plateau, China, between April 2011 and October 2013. Soil was collected in the middle of each month and analyzed for water content, microbial biomass C (MBC) and N (MBN), dissolved organic C and N, and inorganic N. Soil microbial community composition was measured by the dilution-plate method. Fungi and actinomycetes dominated the microbial community during the nongrowing seasons, and the proportion of bacteria increased considerably during the early growing seasons. Trends of consistently increasing MBC and available N pools were observed during the nongrowing seasons. MBC sharply declined during soil thaw and was accompanied by a peak in available N pool. Induced by changes in soil temperatures, significant shifts in the structures and functions of microbial communities were observed during the winter-spring transition and largely contributed to microbial reduction. The divergent seasonal dynamics of different N forms showed a complementary nutrient supply pattern during the growing season. Similarities between the interannual dynamics of microbial biomass and available N pools were observed, and soil temperature and water conditions were the primary environmental factors driving interannual fluctuations. Owing to the changes in climate, seasonal soil microbial activities and nutrient supply patterns are expected to change further, and these changes may have crucial implications for the productivity and biodiversity of alpine ecosystems.

Modeling the distribution of colonial species to improve estimation of plankton concentration in ballast water

Science.gov (United States)

Rajakaruna, Harshana; VandenByllaardt, Julie; Kydd, Jocelyn; Bailey, Sarah

2018-03-01

The International Maritime Organization (IMO) has set limits on allowable plankton concentrations in ballast water discharge to minimize aquatic invasions globally. Previous guidance on ballast water sampling and compliance decision thresholds was based on the assumption that probability distributions of plankton are Poisson when spatially homogenous, or negative binomial when heterogeneous. We propose a hierarchical probability model, which incorporates distributions at the level of particles (i.e., discrete individuals plus colonies per unit volume) and also within particles (i.e., individuals per particle) to estimate the average plankton concentration in ballast water. We examined the performance of the models using data for plankton in the size class ≥ 10 μm and test ballast water compliance using the above models.

Norwegian deep-water coral reefs: cultivation and molecular analysis of planktonic microbial communities.

Science.gov (United States)

Jensen, Sigmund; Lynch, Michael D J; Ray, Jessica L; Neufeld, Josh D; Hovland, Martin

2015-10-01

Deep-sea coral reefs do not receive sunlight and depend on plankton. Little is known about the plankton composition at such reefs, even though they constitute habitats for many invertebrates and fish. We investigated plankton communities from three reefs at 260-350 m depth at hydrocarbon fields off the mid-Norwegian coast using a combination of cultivation and small subunit (SSU) rRNA gene and transcript sequencing. Eight months incubations of a reef water sample with minimal medium, supplemented with carbon dioxide and gaseous alkanes at in situ-like conditions, enabled isolation of mostly Alphaproteobacteria (Sulfitobacter, Loktanella), Gammaproteobacteria (Colwellia) and Flavobacteria (Polaribacter). The relative abundance of isolates in the original sample ranged from ∼ 0.01% to 0.80%. Comparisons of bacterial SSU sequences from filtered plankton of reef and non-reef control samples indicated high abundance and metabolic activity of primarily Alphaproteobacteria (SAR11 Ia), Gammaproteobacteria (ARCTIC96BD-19), but also of Deltaproteobacteria (Nitrospina, SAR324). Eukaryote SSU sequences indicated metabolically active microalgae and animals, including codfish, at the reef sites. The plankton community composition varied between reefs and differed between DNA and RNA assessments. Over 5000 operational taxonomic units were detected, some indicators of reef sites (e.g. Flavobacteria, Cercozoa, Demospongiae) and some more active at reef sites (e.g. Gammaproteobacteria, Ciliophora, Copepoda). © 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

Planktonic foraminifera in the Arctic: potentials and issues regarding modern and quaternary populations

International Nuclear Information System (INIS)

Eynaud, Frederique

2011-01-01

Calcareous microfossils are widely used by paleoceanographers to investigate past sea-surface hydrology. Among these microfossils, planktonic foraminifera are probably the most extensively used tool (e.g. [1] for a review), as they are easy to extract from the sediment and can also be used for coupled geochemical (e.g; δ 18 O, δ 13 C, Mg/Ca) and paleo-ecological investigations. Planktonic foraminifera are marine protists, which build a calcareous shell made of several chambers which reflect in their chemistry the properties of the ambient water-masses. Planktonic foraminifera are known to thrive in various habitats, distributed not only along a latitudinal gradient, but also along different water-depth intervals within surface waters (0-1000 m). Regarding their biogeographical distribution, planktonic foraminifera assemblages therefore mirror different water-masses properties, such as temperature, salinity and nutrient content of the surface water in which they live. The investigation of the specific composition of a fossil assemblage (relative abundances) is therefore a way to empirically obtain (paleo)information on past variations of sea-surface hydrological parameters. This paper focuses on the planktonic foraminifera record from the Arctic domain. This polar region records peculiar sea-surface conditions, with the influence of nearly perennial sea-ice cover development. This has strong impact on living foraminifera populations and on the preservation of their shells in the underlying sediments.

Planktonic foraminifera in the Arctic: potentials and issues regarding modern and quaternary populations

Energy Technology Data Exchange (ETDEWEB)

Eynaud, Frederique, E-mail: f.eynaud@epoc.u-bordeaux1.fr [Universite Bordeaux I, Laboratoire EPOC (Environnements et Paleoenvironnements OCeaniques), UMR CNRS 5805, Avenue des facultes, 33405 Talence cedex - France (France)

2011-05-15

Calcareous microfossils are widely used by paleoceanographers to investigate past sea-surface hydrology. Among these microfossils, planktonic foraminifera are probably the most extensively used tool (e.g. [1] for a review), as they are easy to extract from the sediment and can also be used for coupled geochemical (e.g; {delta}{sup 18}O, {delta}{sup 13}C, Mg/Ca) and paleo-ecological investigations. Planktonic foraminifera are marine protists, which build a calcareous shell made of several chambers which reflect in their chemistry the properties of the ambient water-masses. Planktonic foraminifera are known to thrive in various habitats, distributed not only along a latitudinal gradient, but also along different water-depth intervals within surface waters (0-1000 m). Regarding their biogeographical distribution, planktonic foraminifera assemblages therefore mirror different water-masses properties, such as temperature, salinity and nutrient content of the surface water in which they live. The investigation of the specific composition of a fossil assemblage (relative abundances) is therefore a way to empirically obtain (paleo)information on past variations of sea-surface hydrological parameters. This paper focuses on the planktonic foraminifera record from the Arctic domain. This polar region records peculiar sea-surface conditions, with the influence of nearly perennial sea-ice cover development. This has strong impact on living foraminifera populations and on the preservation of their shells in the underlying sediments.

Habitat suitability and ecological niches of different plankton functional types in the global ocean

Science.gov (United States)

Vogt, Meike; Brun, Philipp; Payne, Mark R.; O'Brien, Colleen J.; Bednaršek, Nina; Buitenhuis, Erik T.; Doney, Scott C.; Leblanc, Karine; Le Quéré, Corinne; Luo, Yawei; Moriarty, Róisín; O'Brien, Todd D.; Schiebel, Ralf; Swan, Chantal

2013-04-01

Marine plankton play a central role in the biogeochemical cycling of important elements such as carbon, nitrogen, and sulphur. While our knowledge about marine ecosystem structure and functioning is still scarce and episodic, several recent observational studies confirm that marine ecosystems have been changing due to recent climate change, overfishing, and coastal eutrophication. In order to better understand marine ecosystem dynamics, the MAREDAT initiative has recently collected abundance and biomass data for 5 autotrophic (diatoms, Phaeocystis, coccolithophores, nitrogen fixers, picophytoplankton), and 6 heterotrophic plankton functional types (PFTs; bacteria, micro-, meso- and macrozooplankton, foraminifera and pteropods). Species distribution models (SDMs) are statistical tools that can be used to derive information about species habitats in space and time. They have been used extensively for a wide range of ecological applications in terrestrial ecosystems, but here we present the first global application in the marine realm, which was made possible by the MAREDAT data synthesis effort. We use a maximum entropy SDM to simulate global habitat suitability, habitat extent and ecological niches for different PFTs in the modern ocean. Present habitat suitability is derived from presence-only MAREDAT data and the observed annual and monthly mean levels of physiologically relevant variables such as SST, nutrient concentration or photosynthetic active radiation received in the mixed layer. This information can then be used to derive ecological niches for different species or taxa within each PFT, and to compare the ecological niches of different PFTs. While these results still need verification because data was not available for all ocean regions for all PFTs, they can give a first indication what present and future plankton habitats may look like, and what consequences we may have to expect for future marine ecosystem functioning and service provision in a warmer

KOEFISIEN SAPROBIK PLANKTON DI PERAIRAN EMBUNG UNIVERSITAS NEGERI SEMARANG

Directory of Open Access Journals (Sweden)

AS Awaludin

2016-04-01

Full Text Available Embung Universitas Negeri Semarang dibangun dengan tujuan sebagai tempat penampungan air hujan dan penyerapan air di Universitas Negeri Semarang dan mempunyai kapasitas penampungan air 5.000 m3. Keberadaan embung tersebut menciptakan suatu ekosistem baru yaitu tempat hidup ikan-ikan di dalamnya. Saprobitas perairan digunakan untuk mengetahui keadaan kualitas air yang diakibatkan adanya penambahan bahan organik dalam suatu  perairan yang biasanya indikatornya adalah jumlah dan susunan spesies dari organisme di dalam perairan tersebut. Plankton dapat digunakan sebagai bioindikator perairan karena memiliki tingkat kepekaan tinggi terhadap adanya pencemaran. Penelitian ini menggunakan rancangan eksplorasi dengan metode survai, dimana penetapan stasiun pengambilan sampel dengan purposive sampling. Penempatan stasiun didasarkan atas perkiraan beban pencemar dan aktivitas yang terdapat di sepanjang aliran dari (stasiun satu sampai sembilan, pengambilan sampel dilakukan sebanyak 3 kali dengan selang waktu 2 minggu. Data dalam penelitian ini adalah data kuantitatif berupa jumlah jenis spesies plankton yang ditemukan pada penelitian ini kemudian diinterpretasikan pada tabel hubungan antara koefisien saprobitas perairan dengan tingkat pencemaran perairan. Berdasarkan perhitungan dan analisis nilai koefisien saprobik dari stasiun satu sampai sampai sembilan didapatkan nilai koefisien saprobik plankton berkisar antara -0,4 s/d 0,9. Berdasarkan kriteria tingkat pencemaran menunjukkan bahwa Embung Universitas Negeri Semarang berada dalam kondisi tercemar ringan sampai dengan sedang.Universitas Negeri Semarang Reservoir was constructed for the purpose as rain water reservoirs and water absorption in Universitas Negeri Semarang and has a water storage capacity of 5,000 cubic meters. The existence of such ponds are creating a new ecosystem where fish live in it. Saprobic waters are used to determine the state of water quality resulting from the addition of

Density and Seasonal Dynamics of Bemisia tabaci (Gennadius) Mediterranean on Common Crops and Weeds around Cotton Fields in Northern China

DEFF Research Database (Denmark)

Zhang, Xiao-ming; Yang, Nian-wan; Wan, Fang-hao

2014-01-01

theophrasti Medicus), sunflower (Helianthus annuus L.), sweet potato (Ipomoea batatas L.), soybean (Glycine max L.), and maize (Zea mays L.). The whitefly species identity was repeatedly tested and confirmed; seasonal dynamics on the various host plants was standardized by the quartile method. B. tabaci MED......The density seasonal dynamics of Bemisia tabaci MED were evaluated over two-years in a cotton-growing area in Langfang, Hebei Province, northern China on cotton (Gossypium hirsutum L.) and six other, co-occurring common plants: common ragweed (Ambrosia artemisiifolia L.), piemarker (Abutilon...

Antimicrobial activity of vanadium chloroperoxidase on planktonic Streptococcus mutans cells and Streptococcus mutans biofilms

NARCIS (Netherlands)

Hoogenkamp, M.A.; Crielaard, W.; ten Cate, J.M.; Wever, R.; Hartog, A.F.; Renirie, R.

2009-01-01

The aim of this study was to investigate the antimicrobial activity of vanadium chloroperoxidase (VCPO) reaction products on planktonic and biofilm cellsof Streptococcus mutans C180-2. Planktonic and biofilm cells were incubated in a buffered reaction mixture containing VCPO, halide (either chloride

High motility reduces grazing mortality of planktonic bacteria

DEFF Research Database (Denmark)

Matz, Carsten; Jurgens, K.

2005-01-01

We tested the impact of bacterial swimming speed on the survival of planktonic bacteria in the presence of protozoan grazers. Grazing experiments with three common bacterivorous nanoflagellates revealed low clearance rates for highly motile bacteria. High-resolution video microscopy demonstrated...... size revealed highest grazing losses for moderately motile bacteria with a cell size between 0.2 and 0.4 mum(3). Grazing mortality was lowest for cells of >0.5 mum(3) and small, highly motile bacteria. Survival efficiencies of >95% for the ultramicrobacterial isolate CP-1 (less than or equal to0.1 mum......(3), >50 mum s(-1)) illustrated the combined protective action of small cell size and high motility. Our findings suggest that motility has an important adaptive function in the survival of planktonic bacteria during protozoan grazing....

Modeling of the impact of Rhone River nutrient inputs on the dynamics of planktonic diversity

Science.gov (United States)

Alekseenko, Elena; Baklouti, Melika; Garreau, Pierre; Guyennon, Arnaud; Carlotti, François

2014-05-01

conditions (for which the sea surface layer is well mixed). As a first step, these scenarios will allow to investigate the impact of changes in the N:P ratios of the Rhone River on the structure of the planktonic community at short time scale (two years). Acknowledgements The present research is a contribution to the Labex OT-Med (n° ANR-11-LABX-0061) funded by the French Government «Investissements d'Avenir» program of the French National Research Agency (ANR) through the A*MIDEX project (n° ANR-11-IDEX-0001-02). We thank our collegue P. Raimbault for the access to the MOOSE project dataset about the nutrient composition of the Rhone River . References Alekseenko E., Raybaud V., Espinasse B., Carlotti F., Queguiner B., Thouvenin B., Garreau P., Baklouti M. (2014) Seasonal dynamics and stoichiometry of the planktonic community in the NW Mediterranean Sea: a 3D modeling approach. Ocean Dynamics IN PRESS. http://dx.doi.org/10.1007/s10236-013-0669-2 Baklouti M, Diaz F, Pinazo C, Faure V, Quequiner B (2006a) Investigation of mechanistic formulations depicting phytoplankton dynamics for models of marine pelagic ecosystems and description of a new model. Prog Oceanogr 71:1-33 Baklouti M, Faure V, Pawlowski L, Sciandra A (2006b) Investigation and sensitivity analysis of a mechanistic phytoplankton model implemented in a new modular tool (Eco3M) dedicated to biogeochemical modelling. Prog Oceanogr 71:34-58 Lazure P, Dumas F (2008) An external-internal mode coupling for a 3D hydrodynamical model for applications at regional scale (MARS). Adv Water Resour 31(2):233-250 Ludwig, W., Dumont, E., Meybeck, M., Heussner, S. (2009). River discharges of water and nutrients to the Mediterranean and Black Sea: Major drivers for ecosystem changes during past and future decades? Progress in Oceanography 80, pp. 199-217 Malanotte-Rizoli, P. and Pan-Med Group. (2012) Physical forcing and physical/biochemical variability of the Mediterranean Sea : A review of unresolved issues and directions of

Short-term community dynamics in seasonal and hyperseasonal cerrados

Directory of Open Access Journals (Sweden)

MV. Cianciaruso

Full Text Available In South America, the largest seasonal savanna region is the Brazilian cerrado. Our aim was to study temporal changes in some community descriptors, such as floristic composition, richness, species density, plant density, and cylindrical volume, in a seasonal cerrado, comparing it to a nearby hyperseasonal cerrado. In four different seasons, we placed randomly ten 1 m² quadrats in each vegetation form and sampled all the vascular plants. Seasonal changes in floristic composition, species density, and plant density were less pronounced in the seasonal than in the hyperseasonal cerrado. Floristic similarity between the vegetation forms was lower when the hyperseasonal cerrado was waterlogged. Richness and species density were higher in the seasonal cerrado, which reached its biomass peak at mid rainy season. The hyperseasonal cerrado, in turn, reached its biomass peak at early rainy season and, despite the waterlogging, maintained it until late rainy season. In the hyperseasonal cerrado, waterlogging acts as an environmental filter restricting the number of cerrado species able to withstand it. The seasonal cerrado community was more stable than the hyperseasonal one. Our results corroborated the idea that changes in the environmental filters will affect floristic composition and community structure in savannas.

Mesh size effects on assessments of planktonic hydrozoan abundance and assemblage structure

Science.gov (United States)

Nogueira Júnior, Miodeli; Pukanski, Luis Eduardo de M.; Souza-Conceição, José M.

2015-04-01

The choice of appropriate mesh-size is paramount to accurately quantify planktonic assemblages, however there is no such information available for hydrozoans. Here planktonic hydrozoan abundance and assemblage structure were compared using 200 and 500 μm meshes at Babitonga estuary (S Brazil), throughout a year cycle. Species richness and Shannon-Wiener diversity were higher in the 200 μm mesh, while evenness was typically higher in the 500 μm. Assemblage structure was significantly different between meshes (PERMANOVA, P 8 mm in October. These results suggest that both meshes have their drawbacks and the best choice would depend on the objectives of each study. Nevertheless species richness, total abundances and most taxa were better represented by the 200 μm mesh, suggesting that it is more appropriate to quantitatively sample planktonic hydrozoan assemblages.

Disruptive selection and bet-hedging in planktonic Foraminifera: Shell morphology as predictor of extinctions

Directory of Open Access Journals (Sweden)

Manuel F. G. Weinkauf

2014-10-01

Full Text Available Extinction is a remarkably difficult phenomenon to study under natural conditions. This is because the outcome of stress exposure and associated fitness reduction is not known until the extinction occurs and it remains unclear whether there is any phenotypic reaction of the exposed population that can be used to predict its fate. Here we take advantage of the fossil record, where the ecological outcome of stress exposure is known. Specifically, we analyze shell morphology of planktonic Foraminifera in sediment samples from the Mediterranean, during an interval preceding local extinctions. In two species representing different plankton habitats, we observe shifts in trait state and decrease in variance in association with non-terminal stress, indicating stabilizing selection. At terminal stress levels, immediately before extinction, we observe increased growth asymmetry and trait variance, indicating disruptive selection and bet-hedging. The pre-extinction populations of both species show a combination of trait states and trait variance distinct from all populations exposed to non-terminal levels of stress. This finding indicates that the phenotypic history of a population may allow the detection of threshold levels of stress, likely to lead to extinction. It is thus an alternative to population dynamics in studying and monitoring natural population ecology.

The effects of the Sea Empress oil spill on the plankton of the southern Irish Sea

International Nuclear Information System (INIS)

Batten, S.; Allen, R.; Wotton, C.

1997-07-01

This report describes the methodology used to determine any effects of the Sea Empress oil spill on the plankton communities of the southern Irish Sea. The Continuous Plankton Recorder (CPR) survey has monitored the plankton in this area since 1970 so there is a long time series of data collected before the spill, almost 2000 samples, with which to compare the post-spill data. The analytical procedures applied and results obtained are presented and reveal that in the majority of cases no significant effects were evident. Some exceptions are also described. The results suggest that no further analysis of the plankton communities is necessary, unless other studies reveal that other marine habitats which may have an influence on the plankton of this area are continuing to display effects of the spill. There is scope for further investigation of the trends and events described in this report but this is outside the remit of the project. (author)

Planktonic algae and cyanoprokaryotes as indicators of ecosystem ...

African Journals Online (AJOL)

Planktonic algae and cyanoprokaryotes as indicators of ecosystem quality in the Mooi River system in the North-West Province, South Africa. ... is important for maintaining the quality of potable water of Potchefstroom and surrounding areas.

Hydro-plankton characteristics and their relationship with sardine and anchovy distributions on the French shelf of the Bay of Biscay

Directory of Open Access Journals (Sweden)

Pierre Petitgas

2006-06-01

Full Text Available The spatial pattern in hydro-plankton and fish distributions and their relationship were analysed based on the spring 2000 fisheries acoustic survey. The importance of this survey was that it was a multi-disciplinary platform which collected an extensive set of parameters in the hydro-plankton leading to a potentially finer description of hydro-plankton conditions and fish habitats. More than 50 variables were measured on a grid of stations, in four compartments of the ecosystem: hydrology, nutrients, primary producers and meso-zooplankton. First, a joint analysis of all hydro-plankton compartments was performed using multiple factor analysis (MFA. The method was used to estimate a compromise factorial space common to all compartments in which the stations were grouped by hierarchical clustering. The groups were represented spatially and a strong spatial pattern was evidenced. The fish and their spawned eggs were sampled along transect lines using acoustics and CUFES (continuous underway fish egg samplers. The distribution of the fish and their eggs was analysed in relation to the hydro-plankton groups of stations and difference in fish density across hydro-plankton conditions was tested by a pair-wise multiple comparison procedure. Anchovy was associated with a lesser number of hydro-plankton conditions than sardine. Eggs of both species were also associated with a lesser number of conditions than the fish. Finally, the gain provided by using the extensive set of hydro-plankton parameters for mapping large-scale hydro-plankton conditions was analysed in comparison with the situation in which a small set of parameters was available. The extensive set of parameters allowed more hydro-plankton conditions to be identified but only in the coastal area and not on the shelf. Size fractionated chlorophyll was determinant for tracking river plume hydro-plankton condition. However, the fish did not respond to the variety of the coastal hydro-plankton

COPEPOD: The Coastal & Oceanic Plankton Ecology, Production, & Observation Database

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Coastal & Oceanic Plankton Ecology, Production, & Observation Database (COPEPOD) provides NMFS scientists with quality-controlled, globally distributed...

Seasonal Snowpack Dynamics and Runoff in a Maritime Forested Basin, Niigata, Japan

Science.gov (United States)

Whitaker, A. C.; Sugiyama, H.

2005-12-01

Seasonal snowpack dynamics are described through field measurements under contrasting canopy conditions for a mountainous catchment in the Japan Sea region. Microclimatic data, snow accumulation, albedo and lysimeter runoff is given through three complete winter seasons 2002-05 in: (1) mature cedar stand, (2) larch stand, and (3) regenerating cedar stand or opening. The accumulation and melt of seasonal snowpack strongly influences streamflow runoff during December to May, including winter base-flow, mid-winter melt, rain-on-snow, and diurnal peaks driven by radiation melt in spring. Lysimeter runoff at all sites is characterised by constant ground melt of 0.8-1.0 mm/day. Rapid response to mid-winter melt or rainfall shows that the snowpack remains in a ripe or near-ripe condition throughout the snowcover season. Hourly and daily lysimeter discharge was greatest during rain-on-snow with the majority of runoff due to rainfall passing through the snowpack as opposed to snowmelt. For both rain-on-snow and radiation melt events lysimeter discharge was generally greatest at the open site, although there were exceptions such as during interception melt events. During radiation melt instantaneous discharge was up to 4.0 times greater in the opening compared to the mature cedar, and 48-hour discharge was up to 2.5 times greater. Perhaps characteristic of maritime climates, forest interception melt is shown to be important in addition to sublimation in reducing snow accumulation beneath dense canopies. While sublimation represents a loss from the catchment water balance, interception melt percolates through the snowpack and contributes to soil moisture during the winter season. Strong differences in microclimate and snowpack albedo persisted between cedar, larch and open sites, and it is suggested further work is needed to account for this in hydrological simulation models.

Dynamic changes in left ventricular mass and in fat-free mass in top-level athletes during the competitive season.

Science.gov (United States)

D'Ascenzi, Flavio; Pelliccia, Antonio; Cameli, Matteo; Lisi, Matteo; Natali, Benedetta Maria; Focardi, Marta; Giorgi, Andrea; D'Urbano, Giorgio; Causarano, Andrea; Bonifazi, Marco; Mondillo, Sergio

2015-01-01

Previous cross-sectional studies have demonstrated that fat-free mass (FFM) is an important determinant of left ventricular mass (LVM) in athletes. However, cross-sectional investigations have not the ability to detect the dynamic adaptation occurring with training. We hypothesized that LVM adapts concurrently with the increase of FFM induced by exercise conditioning. We sought to study the relationship between the variations of LVM and of FFM occurring in top-level soccer players during the season. Twenty-three male top-level athletes were recruited. LVM was assessed by echocardiography and FFM by dual-energy X-ray absorptiometry. Serial measurements were performed pre-season, after 1 month, at mid- and end-season, and after 2 months of detraining. LVM significantly increased at mid-season versus pre-season values, reaching the highest value at the end of the season (p FFM significantly increased (p FFM (R = 0.36, p = 0.005; R = 0.35, p = 0.005, respectively). When ΔLVM index was set as dependent variable, the only independent predictor was ΔFFM (R = 0.87, p = 0.002). Changes in LVM occur in close association with changes in FFM, suggesting that the left ventricle adapts concurrently with the increase of the metabolically active tissue induced by training, i.e. the FFM. Therefore, the dynamic changes in FFM and LVM may reflect a physiological adaptation induced by intensive training. © The European Society of Cardiology 2013 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

Continuous daylight in the high-Arctic summer supports high plankton respiration rates compared to those supported in the dark

KAUST Repository

Mesa, Elena; Delgado-Huertas, Antonio; Carrillo-de-Albornoz, Paloma; Garcí a-Corral, Lara S.; Sanz-Martí n, Marina; Wassmann, Paul; Reigstad, Marit; Sejr, Mikael; Dalsgaard, Tage; Duarte, Carlos M.

2017-01-01

Plankton respiration rate is a major component of global CO2 production and is forecasted to increase rapidly in the Arctic with warming. Yet, existing assessments in the Arctic evaluated plankton respiration in the dark. Evidence that plankton

Host and pathogen ecology drive the seasonal dynamics of a fungal disease, white-nose syndrome.

Science.gov (United States)

Langwig, Kate E; Frick, Winifred F; Reynolds, Rick; Parise, Katy L; Drees, Kevin P; Hoyt, Joseph R; Cheng, Tina L; Kunz, Thomas H; Foster, Jeffrey T; Kilpatrick, A Marm

2015-01-22

Seasonal patterns in pathogen transmission can influence the impact of disease on populations and the speed of spatial spread. Increases in host contact rates or births drive seasonal epidemics in some systems, but other factors may occasionally override these influences. White-nose syndrome, caused by the emerging fungal pathogen Pseudogymnoascus destructans, is spreading across North America and threatens several bat species with extinction. We examined patterns and drivers of seasonal transmission of P. destructans by measuring infection prevalence and pathogen loads in six bat species at 30 sites across the eastern United States. Bats became transiently infected in autumn, and transmission spiked in early winter when bats began hibernating. Nearly all bats in six species became infected by late winter when infection intensity peaked. In summer, despite high contact rates and a birth pulse, most bats cleared infections and prevalence dropped to zero. These data suggest the dominant driver of seasonal transmission dynamics was a change in host physiology, specifically hibernation. Our study is the first, to the best of our knowledge, to describe the seasonality of transmission in this emerging wildlife disease. The timing of infection and fungal growth resulted in maximal population impacts, but only moderate rates of spatial spread. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Detecting signals of seasonal influenza severity through age dynamics

DEFF Research Database (Denmark)

Lee, Elizabeth C.; Viboud, Cécile; Simonsen, Lone

2015-01-01

stages of an outbreak. To address the limitations of traditional indicators, we propose a novel severity index based on influenza age dynamics estimated from routine physician diagnosis data that can be used retrospectively and for early warning. METHODS: We developed a quantitative 'ground truth......' severity benchmark that synthesizes multiple traditional severity indicators from publicly available influenza surveillance data in the United States. Observing that the age distribution of cases may signal severity early in an epidemic, we constructed novel retrospective and early warning severity indexes....... The retrospective index was well correlated with the severity benchmark and correctly identified the two most severe seasons. The early warning index performance varied, but it projected 2007-08 as relatively severe 10 weeks prior to the epidemic peak. Influenza severity varied significantly among states within...

Nutrient Dynamics of Estuarine Invertebrates Are Shaped by Feeding Guild Rather than Seasonal River Flow.

Directory of Open Access Journals (Sweden)

Kelly Ortega-Cisneros

Full Text Available This study aimed to determine the variability of carbon and nitrogen elemental content, stoichiometry and diet proportions of invertebrates in two sub-tropical estuaries in South Africa experiencing seasonal changes in rainfall and river inflow. The elemental ratios and stable isotopes of abiotic sources, zooplankton and macrozoobenthos taxa were analyzed over a dry/wet seasonal cycle. Nutrient content (C, N and stoichiometry of suspended particulate matter exhibited significant spatio-temporal variations in both estuaries, which were explained by the variability in river inflow. Sediment particulate matter (%C, %N and C:N was also influenced by the variability in river flow but to a lesser extent. The nutrient content and ratios of the analyzed invertebrates did not significantly vary among seasons with the exception of the copepod Pseudodiaptomus spp. (C:N and the tanaid Apseudes digitalis (%N, C:N. These changes did not track the seasonal variations of the suspended or sediment particulate matter. Our results suggest that invertebrates managed to maintain their stoichiometry independent of the seasonality in river flow. A significant variability in nitrogen content among estuarine invertebrates was recorded, with highest % N recorded from predators and lowest %N from detritivores. Due to the otherwise general lack of seasonal differences in elemental content and stoichiometry, feeding guild was a major factor shaping the nutrient dynamics of the estuarine invertebrates. The nutrient richer suspended particulate matter was the preferred food source over sediment particulate matter for most invertebrate consumers in many, but not all seasons. The most distinct preference for suspended POM as a food source was apparent from the temporarily open/closed system after the estuary had breached, highlighting the importance of river flow as a driver of invertebrate nutrient dynamics under extreme events conditions. Moreover, our data showed that

Nutrient Dynamics of Estuarine Invertebrates Are Shaped by Feeding Guild Rather than Seasonal River Flow.

Science.gov (United States)

Ortega-Cisneros, Kelly; Scharler, Ursula M

2015-01-01

This study aimed to determine the variability of carbon and nitrogen elemental content, stoichiometry and diet proportions of invertebrates in two sub-tropical estuaries in South Africa experiencing seasonal changes in rainfall and river inflow. The elemental ratios and stable isotopes of abiotic sources, zooplankton and macrozoobenthos taxa were analyzed over a dry/wet seasonal cycle. Nutrient content (C, N) and stoichiometry of suspended particulate matter exhibited significant spatio-temporal variations in both estuaries, which were explained by the variability in river inflow. Sediment particulate matter (%C, %N and C:N) was also influenced by the variability in river flow but to a lesser extent. The nutrient content and ratios of the analyzed invertebrates did not significantly vary among seasons with the exception of the copepod Pseudodiaptomus spp. (C:N) and the tanaid Apseudes digitalis (%N, C:N). These changes did not track the seasonal variations of the suspended or sediment particulate matter. Our results suggest that invertebrates managed to maintain their stoichiometry independent of the seasonality in river flow. A significant variability in nitrogen content among estuarine invertebrates was recorded, with highest % N recorded from predators and lowest %N from detritivores. Due to the otherwise general lack of seasonal differences in elemental content and stoichiometry, feeding guild was a major factor shaping the nutrient dynamics of the estuarine invertebrates. The nutrient richer suspended particulate matter was the preferred food source over sediment particulate matter for most invertebrate consumers in many, but not all seasons. The most distinct preference for suspended POM as a food source was apparent from the temporarily open/closed system after the estuary had breached, highlighting the importance of river flow as a driver of invertebrate nutrient dynamics under extreme events conditions. Moreover, our data showed that estuarine

Plankton biodiversity of Dharamtar creek adjoining Mumbai harbour

Digital Repository Service at National Institute of Oceanography (India)

Tiwari, L.R.; Nair, V.R.

rich plankton community. However, recent industrial development along the banks of creek may pose the problem due to waste disposal into this creek system. Losses of marine life diversity are largely the results of conflicting uses, in particular...

A 13C labelling study on carbon fluxes in Arctic plankton communities under elevated CO2 levels

Directory of Open Access Journals (Sweden)

A. de Kluijver

2013-03-01

Full Text Available The effect of CO2 on carbon fluxes (production, consumption, and export in Arctic plankton communities was investigated during the 2010 EPOCA (European project on Ocean Acidification mesocosm study off Ny Ålesund, Svalbard. 13C labelled bicarbonate was added to nine mesocosms with a range in pCO2 (185 to 1420 μatm to follow the transfer of carbon from dissolved inorganic carbon (DIC into phytoplankton, bacterial and zooplankton consumers, and export. A nutrient–phytoplankton–zooplankton–detritus model amended with 13C dynamics was constructed and fitted to the data to quantify uptake rates and carbon fluxes in the plankton community. The plankton community structure was characteristic for a post-bloom situation and retention food web and showed high bacterial production (∼31% of primary production, high abundance of mixotrophic phytoplankton, low mesozooplankton grazing (∼6% of primary production and low export (∼7% of primary production. Zooplankton grazing and export of detritus were sensitive to CO2: grazing decreased and export increased with increasing pCO2. Nutrient addition halfway through the experiment increased the export, but not the production rates. Although mixotrophs showed initially higher production rates with increasing CO2, the overall production of POC (particulate organic carbon after nutrient addition decreased with increasing CO2. Interestingly, and contrary to the low nutrient situation, much more material settled down in the sediment traps at low CO2. The observed CO2 related effects potentially alter future organic carbon flows and export, with possible consequences for the efficiency of the biological pump.

Inorganic mercury (Hg2+ uptake by different plankton fractions of Andean Patagonian lakes (Argentina

Directory of Open Access Journals (Sweden)

Diéguez M.C.

2014-07-01

Full Text Available The species composition and the size structure of natural planktonic food webs may provide essential information to understand the fate of mercury and, in particular, the bioaccumulation pattern of Hg2+ in the water column of lake ecosystems. Heterotrophic and autotrophic picoplankton and phytoplankton are the most important entry points for Hg in aquatic ecosystems since they concentrate Hg2+ and MeHg from ambient water, making them available to planktonic consumers at higher trophic levels of lake food webs. In this investigation we studied the uptake of 197Hg2+ in natural plankton assemblages from four Andean lakes (Nahuel Huapi National Park, Patagonia, Argentina, comprised in the size fractions 0.2-2.7 μm (picoplankton, 0.2-20 μm (pico and nanoplankton and 20-50 μm (microplankton through experiments using Hg2+ labeled with 197Hg2+. The experimental results showed that the uptake of Hg2+ was highest in the smallest plankton fractions (0.2-2.7 μm and 0.2-20 μm compared to the larger fraction comprising microplankton (20-50 um. This pattern was consistent in all lakes, reinforcing the idea that among pelagic organisms, heterotrophic and autotrophic bacteria with the contribution of nanoflagellates and dinoflagellates constitute the main entry point of Hg2+ to the pelagic food web. Moreover, a significant direct relationship was found between the Hg2+ uptake and surface index of the planktonic fractions (SIf. Thus, the smaller planktonic fractions which bore the higher SI were the major contributors to the Hg2+ passing from the abiotic to the biotic pelagic compartments of these Andean lakes.

Hydrology, plankton, and corals of the Maracajaú reefs (Northeastern Brazil: an ecosystem under severe thermal stress

Directory of Open Access Journals (Sweden)

Elga Miranda Mayal

2009-06-01

Full Text Available This study provides baseline information on the hydrological conditions and on the coral and plankton communities at the Maracajaú reef ecosystem (Northeastern Brazil. Studies were performed from February to June 2000, covering the transition from dry to rainy season. In this area, there is an offshore coral reef formation, where corals were observed in loco; the water samples were collected to obtain the hydrological and plankton data. Six scleractinian species were identified. Stable isotope analysis on the carbonate fraction of Favia gravida fragments showed that these corals were under severe thermal stress. Chlorophyll-a varied from 1.1 to 9.3 mg m-3, with higher values during the rainy season. Average zooplankton wet weight biomass were 117.0 (microzooplankton and 15.7 mg m -3(mesozooplankton. A total of 136 Phytoplankton and 61 zooplankton taxa were identified. Seasonal forcing determined the phyto-micro-and mesozooplankton community structure, rather than the coastal-offshore gradient.Esta pesquisa apresenta informações básicas sobre as condições hidrológicas e sobre as comunidades de corais e do plâncton no ecossistema recifal de Maracajaú (Nordeste do Brasil. Estudos foram realizados de fevereiro a junho de 2000, cobrindo o período de transição das estações seca a chuvosa. Nesta area existe uma formação de recife de coral afastada da costa, onde os corais foram observados in loco e amostras de água foram coletadas para a obtenção de dados hidrológicos e planctônicos. Foram identificadas seis espécies de escleractíneos. Análises com isótopos estáveis em fragmentos de carbonato de Favia gravida mostraram que este coral está sob estresse termal severo. As concentrações de clorofila-a variaram de 1,1 mg m-3 a 9,3 mg m-3, com maiores valores durante o período chuvoso. A biomassa média em peso úmido do zooplâncton foi de 117,0 mg m-3 para o microzooplâncton e de 15,7 mg m-3 para o mesozooplâncton. Foram

The predictive skill of species distribution models for plankton in a changing climate

DEFF Research Database (Denmark)

Brun, Philipp Georg; Kiørboe, Thomas; Licandro, Priscilla

2016-01-01

Statistical species distribution models (SDMs) are increasingly used to project spatial relocations of marine taxa under future climate change scenarios. However, tests of their predictive skill in the real-world are rare. Here, we use data from the Continuous Plankton Recorder program, one...... null models, is essential to assess the robustness of projections of marine planktonic species under climate change...

Factors affecting egg ratios in planktonic rotifers

NARCIS (Netherlands)

Sarma, S.S.S.; Gulati, R.D.; Nandini, S.

2005-01-01

Edmondson’s egg ratio (number of amictic eggs per female) is an important life history variable, which has been in wide use to understand and predict patterns of population growth in planktonic rotifers under field conditions. It is also useful as an indicator of the health of rotifers under culture

Sources of mycosporine-like amino acids in planktonic Chlorella-bearing ciliates (Ciliophora)

Science.gov (United States)

SONNTAG, BETTINA; SUMMERER, MONIKA; SOMMARUGA, RUBEN

2007-01-01

Mycosporine-like amino acids (MAAs) are a family of secondary metabolites known to protect organisms exposed to solar UV radiation. We tested their distribution among several planktonic ciliates bearing Chlorella isolated from an oligo-mesotrophic lake in Tyrol, Austria. In order to test the origin of these compounds, the MAAs were assessed by high performance liquid chromatography in both the ciliates and their symbiotic algae. Considering all Chlorella-bearing ciliates, we found: (i) seven different MAAs (mycosporine-glycine, palythine, asterina-330, shinorine, porphyra-334, usujirene, palythene); (ii) one to several MAAs per species and (iii) qualitative and quantitative seasonal changes in the MAAs (e.g. in Pelagodileptus trachelioides). In all species tested, concentrations of MAAs were always <1% of ciliate dry weight. Several MAAs were also identified in the Chlorella isolated from the ciliates, thus providing initial evidence for their symbiotic origin. In Uroleptus sp., however, we found evidence for a dietary source of MAAs. Our results suggest that accumulation of MAAs in Chlorella-bearing ciliates represents an additional benefit of this symbiosis and an adaptation for survival in sunlit, UV-exposed waters.

Colonial vs planktonic type of growth: mathematical modeling of microbial dynamics on surfaces and in liquid, semi-liquid and solid foods

Directory of Open Access Journals (Sweden)

Panagiotis N. Skandamis

2015-10-01

Full Text Available Predictive models are mathematical expressions that describe the growth, survival, inactivation or biochemical processes of foodborne bacteria. During processing of contaminated raw materials and food preparation, bacteria are entrapped into the food residues, potentially transferred to the equipment surfaces (abiotic or inert surfaces or cross-contaminate other foods (biotic surfaces. Growth of bacterial cells can either occur planktonically in liquid or immobilized as colonies. Colonies are on the surface or confined in the interior (submerged colonies of structured foods. For low initial levels of bacterial population leading to large colonies, the immobilized growth differs from planktonic growth due to physical constrains and to diffusion limitations within the structured foods. Indeed, cells in colonies experience substrate starvation and/or stresses from the accumulation of toxic metabolites such as lactic acid. Furthermore, the micro-architecture of foods also influences the rate and extent of growth. The micro-architecture is determined by (i the non-aqueous phase with the distribution and size of oil particles and the pore size of the network when proteins or gelling agent are solidified, and by (ii the available aqueous phase within which bacteria may swarm or swim. As a consequence, the micro-environment of bacterial cells when they grow in colonies might greatly differs from that when they grow planktonically. The broth-based data used for modeling (lag time and generation time, the growth rate and population level are poorly transferable to solid foods. It may lead to an over-estimation or under-estimation of the predicted population compared to the observed population in food. If the growth prediction concerns pathogen bacteria, it is a major importance for the safety of foods to improve the knowledge on immobilized growth. In this review, the different types of models are presented taking into account the stochastic behavior of

Seasonal and inter-annual dynamics of growth, non-structural carbohydrates and C stable isotopes in a Mediterranean beech forest.

Science.gov (United States)

Scartazza, Andrea; Moscatello, Stefano; Matteucci, Giorgio; Battistelli, Alberto; Brugnoli, Enrico

2013-07-01

Seasonal and inter-annual dynamics of growth, non-structural carbohydrates (NSC) and carbon isotope composition (δ(13)C) of NSC were studied in a beech forest of Central Italy over a 2-year period characterized by different environmental conditions. The net C assimilated by forest trees was mainly used to sustain growth early in the season and to accumulate storage carbohydrates in trunk and root wood in the later part of the season, before leaf shedding. Growth and NSC concentration dynamics were only slightly affected by the reduced soil water content (SWC) during the drier year. Conversely, the carbon isotope analysis on NSC revealed seasonal and inter-annual variations of photosynthetic and post-carboxylation fractionation processes, with a significant increase in δ(13)C of wood and leaf soluble sugars in the drier summer year than in the wetter one. The highly significant correlation between δ(13)C of leaf soluble sugars and SWC suggests a decrease of the canopy C isotope discrimination and, hence, an increased water-use efficiency with decreasing soil water availability. This may be a relevant trait for maintaining an acceptable plant water status and a relatively high C sink capacity during dry seasonal periods. Our results suggest a short- to medium-term homeostatic response of the Collelongo beech stand to variations in water availability and solar radiation, indicating that this Mediterranean forest was able to adjust carbon-water balance in order to prevent C depletion and to sustain plant growth and reserve accumulation during relatively dry seasons.

A Lotka-Volterra competition model with seasonal succession.

Science.gov (United States)

Hsu, Sze-Bi; Zhao, Xiao-Qiang

2012-01-01

A complete classification for the global dynamics of a Lotka-Volterra two species competition model with seasonal succession is obtained via the stability analysis of equilibria and the theory of monotone dynamical systems. The effects of two death rates in the bad season and the proportion of the good season on the competition outcomes are also discussed. © Springer-Verlag 2011

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages.

Science.gov (United States)

Morard, Raphaël; Garet-Delmas, Marie-José; Mahé, Frédéric; Romac, Sarah; Poulain, Julie; Kucera, Michal; de Vargas, Colomban

2018-02-07

Since the advent of DNA metabarcoding surveys, the planktonic realm is considered a treasure trove of diversity, inhabited by a small number of abundant taxa, and a hugely diverse and taxonomically uncharacterized consortium of rare species. Here we assess if the apparent underestimation of plankton diversity applies universally. We target planktonic foraminifera, a group of protists whose known morphological diversity is limited, taxonomically resolved and linked to ribosomal DNA barcodes. We generated a pyrosequencing dataset of ~100,000 partial 18S rRNA foraminiferal sequences from 32 size fractioned photic-zone plankton samples collected at 8 stations in the Indian and Atlantic Oceans during the Tara Oceans expedition (2009-2012). We identified 69 genetic types belonging to 41 morphotaxa in our metabarcoding dataset. The diversity saturated at local and regional scale as well as in the three size fractions and the two depths sampled indicating that the diversity of foraminifera is modest and finite. The large majority of the newly discovered lineages occur in the small size fraction, neglected by classical taxonomy. These unknown lineages dominate the bulk [>0.8 µm] size fraction, implying that a considerable part of the planktonic foraminifera community biomass has its origin in unknown lineages.

Public aquaria as long-term enrichments for investigating planktonic Archaea

Science.gov (United States)

Goldenstein, Nadine I.; Warren, Courtney E.; Lipp, Julius S.; Pagani, Mark; Hinrichs, Kai-Uwe

2016-04-01

The most abundant group of planktonic Archaea , the so-called Thaumarchaeota, represents 20% of all marine planktonic microorganisms (Karner et al., 2001) and their energy efficient performance of nitrification makes them key players in the global nitrogen- and carbon-cycle (Könneke et al., 2014). Furthermore, planktonic Archaea are considered to be the major producers of specific microbial membrane lipids that are extensively used as paleoproxies in marine climate research (Schouten et al., 2002). Therefore, assessing the parameters controlling the distribution of Archaea in the marine water column is crucial for studies of modern and past marine environments. Although diverse studies utilizing DNA- and biomarker-based approaches have constrained the turnover and distribution of marine Archaea, the environmental factors affecting their abundance and activity (e.g., Wuchter et al., 2006; Bale et al., 2013) are still poorly understood. Further, previous surveys, using enrichment cultivation and pure culture experiments, provided valuable information on adaptation of planktonic Archaea to changes of parameters affecting growth conditions, such as temperature, salinity and growth stage (Elling et al., 2014, 2015). Hence, we know that planktonic Archaea directly adapt their membranes to changing growth conditions, but also that environmental selection for individual phylogenetic groups of these organisms is also reflected in the membrane lipid pool. Extending these studies, this project further aims at constraining the environmental parameters controlling archaeal abundance in the marine environment. Public aquaria, which are comparable to perfectly monitored long-term enrichment cultures, are optimal sampling sites for this task. A comprehensive set of 120 water and substrate samples from fresh, marine and brackish systems exhibiting diverse conditions was selected from 15 public aquaria at the east and west coast of the USA. These samples were examined for their

Pemanfaatan Plankton sebagai Sumber Makanan Ikan Bandeng di Waduk Ir. H. Juanda, Jawa Barat

Directory of Open Access Journals (Sweden)

Deden Ibnu Aqil

2016-03-01

Full Text Available Introducing of Milkfish (Chanos chanos was aimed to utilize natural food from plankton that were abundant in Ir. H. Juanda Reservoir, West Java. This research aimed to know plankton utilization by Milkfish in Ir. H. Juanda Reservoir, West Java. The research was conducted from February to July 2010 at 4 stations of sampling which representing the reservoir condition. The fishes collected based on the catch of fishermen. The sample was analyzed in physiology laboratory of Center Research for Limnology. The result of this research showed that the main food were plankton 43%, detritus 46%, and complement food were vegetation 11%. The domination food from the phytoplankton were Bacillariophyceae and zooplankton were Copepoda.

Planktonic growth and biofilm formation profiles in Candida haemulonii species complex.

Science.gov (United States)

Ramos, Lívia S; Oliveira, Simone S C; Souto, Xênia M; Branquinha, Marta H; Santos, André L S

2017-10-01

Candida haemulonii species complex have emerged as multidrug-resistant yeasts able to cause fungemia worldwide. However, very little is known regarding their physiology and virulence factors. In this context, planktonic growth and biofilm formation of Brazilian clinical isolates of Candida haemulonii (n = 5), Candida duobushaemulonii (n = 4), and Candida haemulonii var. vulnera (n = 3) were reported. Overall, the fungal planktonic growth curves in Sabouraud dextrose broth reached the exponential phase in 48 h at 37°C. All the clinical isolates formed biofilm on polystyrene in a time-dependent event, as judged by the parameters evaluated: biomass (crystal violet staining), metabolic activity (XTT reduction), and extracellular matrix (safranin incorporation). No statistically significant differences were observed when the average measurements among the three Candida species were compared regarding both planktonic and biofilm lifestyles; however, typical isolate-specific differences were clearly noticed in fungal growth kinetics. © The Author 2017. Published by Oxford University Press on behalf of The International Society for Human and Animal Mycology. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

The value of model averaging and dynamical climate model predictions for improving statistical seasonal streamflow forecasts over Australia

Science.gov (United States)

Pokhrel, Prafulla; Wang, Q. J.; Robertson, David E.

2013-10-01

Seasonal streamflow forecasts are valuable for planning and allocation of water resources. In Australia, the Bureau of Meteorology employs a statistical method to forecast seasonal streamflows. The method uses predictors that are related to catchment wetness at the start of a forecast period and to climate during the forecast period. For the latter, a predictor is selected among a number of lagged climate indices as candidates to give the "best" model in terms of model performance in cross validation. This study investigates two strategies for further improvement in seasonal streamflow forecasts. The first is to combine, through Bayesian model averaging, multiple candidate models with different lagged climate indices as predictors, to take advantage of different predictive strengths of the multiple models. The second strategy is to introduce additional candidate models, using rainfall and sea surface temperature predictions from a global climate model as predictors. This is to take advantage of the direct simulations of various dynamic processes. The results show that combining forecasts from multiple statistical models generally yields more skillful forecasts than using only the best model and appears to moderate the worst forecast errors. The use of rainfall predictions from the dynamical climate model marginally improves the streamflow forecasts when viewed over all the study catchments and seasons, but the use of sea surface temperature predictions provide little additional benefit.

Seasonal differences in organochlorine pesticide concentrations of zooplankton and fish in the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Shailaja, M.S.; Nair, M.

.44 *6.9l) < 0.4r(* c: 0.4x* Aidrin < 0.02* 4.53 (0.03) 2.81 (2.01) s 0.35 i/ (0.7) 2 0.09 (0.01) < 0.02* g % 0.16 s (0.05) q’ < 0.02* 0.52 * I .02 (0.46 i 0.73) 0.56 (0.06) 0.25 (0.62) Seasonal diferences in organochlorine... Demersal “Lipid-notmalised values in parentheses Fish: Plankton rufio” r-DDT Aldrin 0.05. 1.6 0.09. 2.7 (0.03--5.7) (0.04-l 2.9) 0.02-0.5 O-o.5 (0.20.~ 2.9) (W.0) 0.5 -4.1 Cl.6 (0.74.2) (63.9) 0.4-I .O O&l.2 (I .o -9.5) (O-35. I) Seasonal dif...

Sediment dynamics in a large shallow lake characterized by seasonal flood pulse in Southeast Asia.

Science.gov (United States)

Siev, Sokly; Yang, Heejun; Sok, Ty; Uk, Sovannara; Song, Layheang; Kodikara, Dilini; Oeurng, Chantha; Hul, Seingheng; Yoshimura, Chihiro

2018-08-01

Most of studies on sediment dynamics in stable shallow lakes focused on the resuspension process as it is the dominant process. However, understanding of sediment dynamics in a shallow lake influenced by flood pulse is unclear. We tested a hypothesis that floodplain vegetation plays as a significant role in lessening the intensity of resuspension process in a shallow lake characterized by the flood pulse system. Therefore, this study aimed to investigate sediment dynamics in this type of shallow lake. The target was Tonle Sap Lake (TSL), which is a large shallow lake influenced by a flood pulse system of Mekong River located in Southeast Asia. An extensive and seasonal sampling survey was conducted to measure total suspended solid (TSS) concentrations, sedimentation and resuspension rates in TSL and its 4 floodplain areas. The study revealed that sedimentation process was dominant (TSS ranged: 3-126mgL -1 ) in the high water period (September-December) while resuspension process was dominant (TSS ranged: 4-652mgL -1 ) only in the low water period (March-June). In addition, floodplain vegetation reduced the resuspension of sediment (up to 26.3%) in water. The implication of the study showed that resuspension is a seasonally dominant process in shallow lake influenced by the flood pulse system at least for the case of TSL. Copyright © 2018 Elsevier B.V. All rights reserved.

Sulfur and Iron Cycling in a Coastal Sediment - Radiotracer Studies and Seasonal Dynamics

DEFF Research Database (Denmark)

MOESLUND, L.; THAMDRUP, B.; JØRGENSEN, BB

1994-01-01

The seasonal variation in sulfate reduction and the dynamics of sulfur and iron geochemistry were studied throughout a year in sediment of Aarhus Bay, Denmark. A radiotracer method for measuring sulfate reduction rates was applied with incubation times down to 15 min and a depth resolution down...... to 2 mm in the oxidized surface layer of the sediment. The radiotracer data were analyzed by a mathematical model which showed that, due to partial, rapid reoxidation of radioactive sulfide during incubation, the actual reduction rates in this layer were probably underestimated 5-fold. In the deeper......, sulfidic zone, measured rates appeared to be correct. Sulfate reduction followed the seasonal variation in temperature with maximum activity at 1-2 cm depth in late summer. In spite of its rapid production, free H2S was detectable in the porewater only below the depth of free Fe2+ at 6-7 cm throughout...

Effect of rainfall cessation on the plankton abundance and diversity ...

African Journals Online (AJOL)

The physico-chemical characteristics of the creek were influenced by the seasonal change in water chemistry. Surface water was characterized by high total ... study were Nitzschia, Ulnaria, Oscillatoriaand Pinnularia. Keywords: Organic pollution, physico-chemical characteristics, tidal dynamics, phytoplankton, zooplankton ...

Linking the planktonic and benthic habitat: genetic structure of the marine diatom Skeletonema marinoi.

Science.gov (United States)

Godhe, Anna; Härnström, Karolina

2010-10-01

Dormant life stages are important strategies for many aquatic organisms. The formation of resting stages will provide a refuge from unfavourable conditions in the water column, and their successive accumulation in the benthos will constitute a genetic reservoir for future planktonic populations. We have determined the genetic structure of a common bloom-forming diatom, Skeletonema marinoi, in the sediment and the plankton during spring, summer and autumn two subsequent years (2007-2009) in Gullmar Fjord on the Swedish west coast. Eight polymorphic microsatellite loci were used to assess the level of genetic differentiation and the respective gene diversity of the two different habitats. We also determined the degree of genetic differentiation between the seed banks inside the fjord and the open sea. The results indicate that Gullmar Fjord has one dominant endogenous population of S. marinoi, which is genetically differentiated from the open sea population. The fjord population is encountered in the plankton and in the sediment. Shifts from the dominant population can happen, and in our study, two genetically differentiated plankton populations, displaying reduced genetic diversity, occurred in September 2007 and 2008. Based on our results, we suggest that sill fjords maintain local long-lived and well-adapted protist populations, which continuously shift between the planktonic and benthic habitats. Intermittently, short-lived and mainly asexually reproducing populations can replace the dominant population in the water column, without influencing the genetic structure of the benthic seed bank. © 2010 Blackwell Publishing Ltd.

Marine plankton as an indicator of low-level radionuclide contamination in the Southern Ocean

International Nuclear Information System (INIS)

Marsh, K.V.; Buddemeier, R.W.

1984-07-01

We have initiated an investigation of the utility of marine plankton as bioconcentrating samplers of low-level marine radioactivity in the southern hemisphere. A literature review shows that both freshwater and marine plankton have trace element and radionuclide concentration factors (relative to water) of up to 10 4 . In the years 1956-1958, considerable work was done on the accumulation and distribution of a variety of fission and activation products produced by the nuclear tests in the Marshall Islands. Since then, studies have largely been confined to a few selected radionuclides, and by far most of this work has been done in the northern hemisphere. We participated in Operation Deepfreeze 1981, collecting 32 plankton samples from the U.S. Coast Guard Cutter Glacier on its Antarctic cruise, while Battelle Pacific Northwest Laboratories concurrently sampled air, water, rain and fallout. We were able to measure concentrations of the naturally occurring radionuclides 7 Be, 40 K and the U and th series, and we believe that we have detected low levels of 144 Ce and 95 Nb in seven samples ranging as far south as 68 0 . There is a definite association between the radionuclide content of plankton and air filters, suggesting that aerosol resuspension of marine radioactivity may be occurring. Biological identification of the plankton suggests a possible correlation between radionuclide concentration and foraminifera content of the samples. 38 references, 7 figures, 3 tables

Seasonal dynamics of phytoplankton in two tropical rivers of varying size and human impact in Southeast Nigeria

Directory of Open Access Journals (Sweden)

Okechukwu Idumah Okogwu

2013-12-01

Full Text Available Phytoplankton occurrence and dynamics in rivers are mainly shaped by hydrophysical conditions and nutrient availability. Phytoplankton main structuring factors have been poorly studied in West African rivers, and this study was undertaken to identify these conditions in two tropical rivers that vary in size and human impact. For this, environmental variables and phytoplankton monthly samples were collected from the middle reaches of Asu and Cross rivers during an 18 months survey from March 2005-July 2006. Phytoplankton biomass (F=11.87, p=0.003, Shannon-Weiner diversity and species richness (F=5.93, p=0.003 showed significant seasonality in Asu but not in Cross River. Data was analyzed with Canonical correspondence analysis (CCA and showed environmental differences between the two rivers, nitrate in Asu River (5.1-15.5mg/L was significantly higher than Cross River (0.03-1.7mg/L, while PO4 (0.2-0.9mg/L was significantly lower in Asu River compared to Cross River (0.03-2.6mg/L (p<0.05. Eutrophic factors (NO3 determined primarily phytoplankton dynamics in Asu River, especially during the dry season, whereas hydrophysical factors (depth, transparency and temperature shaped phytoplankton in Cross River. Taxa indicative of an eutrophic condition, such as Euglena, Chlorella, Chlorococcus, Ceratium, Peridinium, Anabaena, Aphanizomenon, Closterium, Scenedesmus and Pediastrum spp., were frequently encountered in the shallow impounded Asu River, while riverine species, such as Frustulia rhomboids, Gyrosigma sp., Opephora martyr and Surirella splendida dominated Cross River. A succession pattern was observed in the functional groups identified: Na/MP→TB→P (rainy→dry season was observed in Asu River, whereas MP/D predominated in Cross River for both seasons. We concluded that, if nutrients predominate hydrophysical factors in shaping phytoplankton during dry season (half of the year then, they are as important as hydrophysical factors structuring

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean.

Science.gov (United States)

Lincoln, Sara A; Wai, Brenner; Eppley, John M; Church, Matthew J; Summons, Roger E; DeLong, Edward F

2014-07-08

Archaea are ubiquitous in marine plankton, and fossil forms of archaeal tetraether membrane lipids in sedimentary rocks document their participation in marine biogeochemical cycles for >100 million years. Ribosomal RNA surveys have identified four major clades of planktonic archaea but, to date, tetraether lipids have been characterized in only one, the Marine Group I Thaumarchaeota. The membrane lipid composition of the other planktonic archaeal groups--all uncultured Euryarchaeota--is currently unknown. Using integrated nucleic acid and lipid analyses, we found that Marine Group II Euryarchaeota (MG-II) contributed significantly to the tetraether lipid pool in the North Pacific Subtropical Gyre at shallow to intermediate depths. Our data strongly suggested that MG-II also synthesize crenarchaeol, a tetraether lipid previously considered to be a unique biomarker for Thaumarchaeota. Metagenomic datasets spanning 5 y indicated that depth stratification of planktonic archaeal groups was a stable feature in the North Pacific Subtropical Gyre. The consistent prevalence of MG-II at depths where the bulk of exported organic matter originates, together with their ubiquitous distribution over diverse oceanic provinces, suggests that this clade is a significant source of tetraether lipids to marine sediments. Our results are relevant to archaeal lipid biomarker applications in the modern oceans and the interpretation of these compounds in the geologic record.

Evolution of a Planktonic Foraminifer during Environmental Changes in the Tropical Oceans.

Science.gov (United States)

Ujiié, Yurika; Ishitani, Yoshiyuki

2016-01-01

Ecological adaptation to environmental changes is a strong driver of evolution, enabling speciation of pelagic plankton in the open ocean without the presence of effective physical barriers to gene flow. The tropical ocean environment, which plays an important role in shaping marine biodiversity, has drastically and frequently changed since the Pliocene. Nevertheless, the evolutionary history of tropical pelagic plankton has been poorly understood, as phylogeographic investigations are still in the developing state and paleontological approaches are insufficient to obtain a sequential record from the deep-sea sediments. The planktonic foraminifer Pulleniatina obliquiloculata is widely distributed in the tropical area throughout the world's oceans, and its phylogeography is well established. It is thus one of the best candidates to examine how past environmental changes may have shifted the spatial distribution and affected the diversification of tropical pelagic plankton. Such an examination requires the divergence history of the planktonic foraminifers, yet the gene marker (partial small subunit (SSU) rDNA) previously used for phylogeographic studies was not powerful enough to achieve a high accuracy in estimating the divergence times. The present study focuses on improving the precision of divergence time estimates for the splits between sibling species (genetic types) of planktonic foraminifers by increasing the number of genes as well as the number of nucleotide bases used for molecular clock estimates. We have amplified the entire coding regions of two ribosomal RNA genes (SSU rDNA and large subunit (LSU) rDNA) of three genetic types of P. obliquiloculata and two closely related species for the first time and applied them to the Bayesian relaxed clock method. The comparison of the credible intervals of the four datasets consisting either of sequences of the partial SSU rDNA, the complete SSU rDNA, LSU rDNA, or a combination of both genes (SSU+LSU) clearly

Effects of Bt-transgenic rice cultivation on planktonic communities in paddy fields and adjacent ditches

Energy Technology Data Exchange (ETDEWEB)

Liu, Yongbo, E-mail: liuyb@craes.org.cn [State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012 (China); Liu, Fang [State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012 (China); Wang, Chao [Pearl River Fisheries Research Institute, Chinese Academy of Fishery Science, Guangzhou 510380 (China); Quan, Zhanjun [State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012 (China); Li, Junsheng, E-mail: lijsh@creas.org.cn [State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012 (China)

2016-09-15

The non-target effects of transgenic plants are issues of concern; however, their impacts in cultivated agricultural fields and adjacent natural aquatic ecosystems are poorly understood. We conducted field experiments during two growing seasons to determine the effects of cultivating Bacillus thuringiensis (Bt)-transgenic rice on the phytoplankton and zooplankton communities in a paddy field and an adjacent ditch. Bt toxin was detected in soil but not in water. Water quality was not significantly different between non-Bt and Bt rice fields, but varied among up-, mid- and downstream locations in the ditch. Cultivation of Bt-transgenic rice had no effects on zooplankton communities. Phytoplankton abundance and biodiversity were not significantly different between transgenic and non-transgenic rice fields in 2013; however, phytoplankton were more abundant in the transgenic rice field than in the non-transgenic rice field in 2014. Water quality and rice type explained 65.9% and 12.8% of this difference in 2014, respectively. Phytoplankton and zooplankton were more abundant in mid- and downstream, than upstream, locations in the ditch, an effect that we attribute to water quality differences. Thus, the release of Bt toxins into field water during the cultivation of transgenic crops had no direct negative effects on plankton community composition, but indirect effects that alter environmental conditions should be taken into account during the processes of management planning and policymaking. - Highlights: • We detect fusion Cry1Ab/1Ac proteins from Bt rice entering into aquatic ecosystems. • Bt-transgenic rice cultivation have no significant effect on zooplankton community. • Bt-transgenic rice cultivation have indirect effect on phytoplankton community. • Water quality explains the difference of plankton communities in adjacent ditches.

Effects of Bt-transgenic rice cultivation on planktonic communities in paddy fields and adjacent ditches

International Nuclear Information System (INIS)

Liu, Yongbo; Liu, Fang; Wang, Chao; Quan, Zhanjun; Li, Junsheng

2016-01-01

The non-target effects of transgenic plants are issues of concern; however, their impacts in cultivated agricultural fields and adjacent natural aquatic ecosystems are poorly understood. We conducted field experiments during two growing seasons to determine the effects of cultivating Bacillus thuringiensis (Bt)-transgenic rice on the phytoplankton and zooplankton communities in a paddy field and an adjacent ditch. Bt toxin was detected in soil but not in water. Water quality was not significantly different between non-Bt and Bt rice fields, but varied among up-, mid- and downstream locations in the ditch. Cultivation of Bt-transgenic rice had no effects on zooplankton communities. Phytoplankton abundance and biodiversity were not significantly different between transgenic and non-transgenic rice fields in 2013; however, phytoplankton were more abundant in the transgenic rice field than in the non-transgenic rice field in 2014. Water quality and rice type explained 65.9% and 12.8% of this difference in 2014, respectively. Phytoplankton and zooplankton were more abundant in mid- and downstream, than upstream, locations in the ditch, an effect that we attribute to water quality differences. Thus, the release of Bt toxins into field water during the cultivation of transgenic crops had no direct negative effects on plankton community composition, but indirect effects that alter environmental conditions should be taken into account during the processes of management planning and policymaking. - Highlights: • We detect fusion Cry1Ab/1Ac proteins from Bt rice entering into aquatic ecosystems. • Bt-transgenic rice cultivation have no significant effect on zooplankton community. • Bt-transgenic rice cultivation have indirect effect on phytoplankton community. • Water quality explains the difference of plankton communities in adjacent ditches.

Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments.

Science.gov (United States)

Jumpponen, A; Jones, K L

2010-04-01

*The fungal richness, diversity and community composition in the Quercus macrocarpa phyllosphere were compared across a growing season in trees located in six stands within and outside a small urban center using 454-sequencing and DNA tagging. The approaches did not differentiate between endophytic and epiphytic fungal communities. *Fungi accumulated in the phyllosphere rapidly and communities were temporally dynamic, with more than a third of the analyzed operational taxonomic units (OTUs) and half of the BLAST-inferred genera showing distinct seasonal patterns. The seasonal patterns could be explained by fungal life cycles or environmental tolerances. *The communities were hyperdiverse and differed between the urban and nonurban stands, albeit not consistently across the growing season. Foliar macronutrients (nitrogen (N), potassium (K) and sulfur (S)), micronutrients (boron (B), manganese (Mn) and selenium (Se)) and trace elements (cadmium (Cd), lead (Pb) and zinc (Zn)) were enriched in the urban trees, probably as a result of anthropogenic activities. Because of correlations with the experimental layout, these chemical elements should not be considered as community drivers without further empirical studies. *We suggest that a combination of mechanisms leads to differences between urban and nonurban communities. Among those are stand isolation and size, nutrient and pollutant accumulation plus stand management, including fertilization and litter removal.

Massive consumption of gelatinous plankton by Mediterranean apex predators.

Directory of Open Access Journals (Sweden)

Luis Cardona

Full Text Available Stable isotopes of carbon and nitrogen were used to test the hypothesis that stomach content analysis has systematically overlooked the consumption of gelatinous zooplankton by pelagic mesopredators and apex predators. The results strongly supported a major role of gelatinous plankton in the diet of bluefin tuna (Thunnus thynnus, little tunny (Euthynnus alletteratus, spearfish (Tetrapturus belone and swordfish (Xiphias gladius. Loggerhead sea turtles (Caretta caretta in the oceanic stage and ocean sunfish (Mola mola also primarily relied on gelatinous zooplankton. In contrast, stable isotope ratios ruled out any relevant consumption of gelatinous plankton by bluefish (Pomatomus saltatrix, blue shark (Prionace glauca, leerfish (Lichia amia, bonito (Sarda sarda, striped dolphin (Stenella caerueloalba and loggerhead sea turtles (Caretta caretta in the neritic stage, all of which primarily relied on fish and squid. Fin whales (Balaenoptera physalus were confirmed as crustacean consumers. The ratios of stable isotopes in albacore (Thunnus alalunga, amberjack (Seriola dumerili, blue butterfish (Stromaeus fiatola, bullet tuna (Auxis rochei, dolphinfish (Coryphaena hyppurus, horse mackerel (Trachurus trachurus, mackerel (Scomber scombrus and pompano (Trachinotus ovatus were consistent with mixed diets revealed by stomach content analysis, including nekton and crustaceans, but the consumption of gelatinous plankton could not be ruled out completely. In conclusion, the jellyvorous guild in the Mediterranean integrates two specialists (ocean sunfish and loggerhead sea turtles in the oceanic stage and several opportunists (bluefin tuna, little tunny, spearfish, swordfish and, perhaps, blue butterfish, most of them with shrinking populations due to overfishing.

Seasonal Dynamics of Haptophytes and dsDNA Algal Viruses Suggest Complex Virus-Host Relationship.

Science.gov (United States)

Johannessen, Torill Vik; Larsen, Aud; Bratbak, Gunnar; Pagarete, António; Edvardsen, Bente; Egge, Elianne D; Sandaa, Ruth-Anne

2017-04-20

Viruses influence the ecology and diversity of phytoplankton in the ocean. Most studies of phytoplankton host-virus interactions have focused on bloom-forming species like Emiliania huxleyi or Phaeocystis spp. The role of viruses infecting phytoplankton that do not form conspicuous blooms have received less attention. Here we explore the dynamics of phytoplankton and algal viruses over several sequential seasons, with a focus on the ubiquitous and diverse phytoplankton division Haptophyta, and their double-stranded DNA viruses, potentially with the capacity to infect the haptophytes. Viral and phytoplankton abundance and diversity showed recurrent seasonal changes, mainly explained by hydrographic conditions. By 454 tag-sequencing we revealed 93 unique haptophyte operational taxonomic units (OTUs), with seasonal changes in abundance. Sixty-one unique viral OTUs, representing Megaviridae and Phycodnaviridae , showed only distant relationship with currently isolated algal viruses. Haptophyte and virus community composition and diversity varied substantially throughout the year, but in an uncoordinated manner. A minority of the viral OTUs were highly abundant at specific time-points, indicating a boom-bust relationship with their host. Most of the viral OTUs were very persistent, which may represent viruses that coexist with their hosts, or able to exploit several host species.

Lunar periodicity in the shell flux of planktonic foraminifera in the Gulf of Mexico

Science.gov (United States)

Jonkers, Lukas; Reynolds, Caitlin E.; Richey, Julie N.; Hall, Ian R.

2015-01-01

Synchronised reproduction offers clear benefits to planktonic foraminifera – an important group of marine calcifiers – as it increases the chances of successful gamete fusion. Such synchrony requires tuning to an internal or external clock. Evidence exists for lunar reproductive cycles in some species, but its recognition in shell flux time series has proven difficult, raising questions about reproductive strategies. Using spectral analysis of a 4-year time series (mostly at weekly resolution) from the northern Gulf of Mexico, we show that the shell flux ofGloborotalia menardii, Globigerinella siphonifera, Orbulina universa, Globigerinoides sacculifer, Globigerinoides ruber (both pink and white varieties), Pulleniatina obliquiloculata, Neogloboquadrina dutertrei, Globigerinella calida and Globigerinita glutinata is characterised by lunar periodicity. However, the lunar rhythm is not present in all size fractions of each species and tends to be more dominant in the flux of larger shells, consistent with reproduction being more prevalent in larger specimens. Lunar periodicity is superimposed on longer term/seasonal changes in the shell fluxes, but accounts for a significant part of the variance in the fluxes. The amplitude of the lunar cycle increases roughly proportional with the magnitude of the flux, demonstrating that most of the population is indeed affected by lunar-phased synchronisation. In most species peak fluxes occur predominantly around, or just after, full moon. Only G. siphonifera and G. calida show a contrasting pattern with peaks concentrated around new moon. Although the exact cause of the synchronisation remains elusive, our data considerably increase the number of species for which lunar synchronised reproduction is reported and suggest that such reproductive behaviour is common in many species of planktonic foraminifera.

Sedimentary oxygen dynamics in a seasonally hypoxic basin

NARCIS (Netherlands)

Seitaj, D.; Sulu-Gambari, F; Burdorf, L.D.W.; Romero-Ramirez, A.; Maire, O.; Malkin, S.Y.; Slomp, C. P.; Meysman, F.J.R.

2017-01-01

Seasonal hypoxia refers to the oxygen depletion that occurs in summer in the bottom water of stratified systems, and is increasingly observed in coastal areas worldwide. The process induces a seasonal cycle on the biogeochemistry of the underlying sediments, which remains poorly quantified. Here, we

Sedimentary oxygen dynamics in a seasonally hypoxic basin

NARCIS (Netherlands)

Seitaj, Dorina; Sulu-Gambari, Fatimah; Burdorf, Laurine D. W.; Romero-Ramirez, Alicia; Maire, Olivier; Malkin, Sairah Y.; Slomp, Caroline P.; Meysman, Filip J.R.

Seasonal hypoxia refers to the oxygen depletion that occurs in summer in the bottom water of stratified systems, and is increasingly observed in coastal areas worldwide. The process induces a seasonal cycle on the biogeochemistry of the underlying sediments, which remains poorly quantified. Here, we

Specific structure, sexual parity and seasonal dynamics of separate kinds of ground-beetles of Tljaratinskiy area of Daghestan

Directory of Open Access Journals (Sweden)

M. H. Imanmirzaev

2008-01-01

Full Text Available As a result of carried out research in fauna of ground-beetles of Tljaratinskiy area it is revealed 87 kinds concerning 24 sorts. The sexual parity is established and seasonal dynamics of prepotent kinds is certain.

Antimicrobial activity of synthetic cationic peptides and lipopeptides derived from human lactoferricin against Pseudomonas aeruginosa planktonic cultures and biofilms.

Science.gov (United States)

Sánchez-Gómez, Susana; Ferrer-Espada, Raquel; Stewart, Philip S; Pitts, Betsey; Lohner, Karl; Martínez de Tejada, Guillermo

2015-07-07

Infections by Pseudomonas aeruginosa constitute a serious health threat because this pathogen -particularly when it forms biofilms - can acquire resistance to the majority of conventional antibiotics. This study evaluated the antimicrobial activity of synthetic peptides based on LF11, an 11-mer peptide derived from human lactoferricin against P. aeruginosa planktonic and biofilm-forming cells. We included in this analysis selected N-acylated derivatives of the peptides to analyze the effect of acylation in antimicrobial activity. To assess the efficacy of compounds against planktonic bacteria, microdilution assays to determine the minimal inhibitory concentration (MIC), minimum bactericidal concentration (MBC) and time-kill studies were conducted. The anti-biofilm activity of the agents was assessed on biofilms grown under static (on microplates) and dynamic (in a CDC-reactor) flow regimes. The antimicrobial activity of lipopeptides differed from that of non-acylated peptides in their killing mechanisms on planktonic and biofilm-forming cells. Thus, acylation enhanced the bactericidal activity of the parental peptides and resulted in lipopeptides that were uniformly bactericidal at their MIC. In contrast, acylation of the most potent anti-biofilm peptides resulted in compounds with lower anti-biofilm activity. Both peptides and lipopeptides displayed very rapid killing kinetics and all of them required less than 21 min to reduce 1,000 times the viability of planktonic cells when tested at 2 times their MBC. The peptides, LF11-215 (FWRIRIRR) and LF11-227 (FWRRFWRR), displayed the most potent anti-biofilm activity causing a 10,000 fold reduction in cell viability after 1 h of treatment at 10 times their MIC. At that concentration, these two compounds exhibited low citotoxicity on human cells. In addition to its bactericidal activity, LF11-227 removed more that 50 % of the biofilm mass in independent assays. Peptide LF11-215 and two of the shortest and least

A model of seasonal foliage dynamics of the subtropical mangrove species Rhizophora stylosa Griff. growing at the northern limit of its distribution

Directory of Open Access Journals (Sweden)

Sahadev Sharma

2014-08-01

Full Text Available Background Progress of forest production in response to the environment requires a quantitative understanding of leaf area development. Therefore, it is necessary to investigate the dynamics of seasonal crown foliage in order to understand the productivity of mangroves, which play an important role in the subtropical and tropical coastlines of the world. Method Crown foliage dynamics of the mangrove Rhizophora stylosa were studies to reveal patterns of leaf recruitment, survival and seasonal leaf area growth. Results Flushing of leaves occurred throughout the year, but both flushing and leaf area growth pattern of leaves varied with season. Maximum flushing occurred in summer, but leaf areas did not differ significantly with season. The half-expansion period is longer, and the intrinsic rate of increase was lower in winter. Summer flushed leaves grew faster at their initial stage and reached their maximum area over a shorter period of time. The difference in temperature and air vapor pressure deficit (VPD between summer and winter contributed to the present dynamics of foliage patterns. The mean leaf longevity was estimated to be 13.1 month. The crown foliage area was almost stable throughout the year. Conclusions Homeostatic control of the crown foliage area may be accompanied by the existence of ecophysiological mechanisms in R. stylosa. Integrating crown foliage dynamics into forest models represents an important step towards incorporating physiological mechanisms into the models for predicting growth responses to environmental changes and for understanding the complex responses of tree growth and litter production.

SEASONAL MARKETING: STRATEGIES USING THE CALENDAR

OpenAIRE

Dr Anil Sardana; Dr PoojaTalwar; Shruti Gulati

2018-01-01

In this ever-dynamic world, the only thing that is constant is change. Change when happens, applies to all; then why should marketing remain the same? Each year is a witness to various seasons, and each season requires separate marketing efforts to be carried out differently. Seasonal marketing thus helps to capitalise on the varied demand through varied marketing. Every season requires special efforts and hence leads to different sales.

Computer vision for continuous plankton monitoring

OpenAIRE

Damian Janusz Matuszewski

2014-01-01

Plankton microorganisms constitute the base of the marine food web and play a great role in global atmospheric carbon dioxide drawdown. Moreover, being very sensitive to any environmental changes they allow noticing (and potentially counteracting) them faster than with any other means. As such they not only influence the fishery industry but are also frequently used to analyze changes in exploited coastal areas and the influence of these interferences on local environment and climate. As a co...

Which Environmental Factors Predict Seasonal Variation in the Coral Health of Acropora digitifera and Acropora spicifera at Ningaloo Reef?

Science.gov (United States)

Hinrichs, Saskia; Patten, Nicole L.; Feng, Ming; Strickland, Daniel; Waite, Anya M.

2013-01-01

The impact of physico-chemical factors on percent coral cover and coral health was examined on a spatial basis for two dominant Acropora species, A. digitifera and A. spicifera, at Ningaloo Reef (north-western Australia) in the southeast Indian Ocean. Coral health was investigated by measuring metabolic indices (RNA/DNA ratio and protein concentration), energy levels (lipid ratio) and autotrophic indices (chlorophyll a (chl a) and zooxanthellae density) at six stations during typical seasons (austral autumn 2010 (March and April), austral winter 2010 (August)) and during an extreme La Niña event in summer 2011 (February). These indices were correlated with 15 physico-chemical factors (measured immediately following coral sampling) to identify predictors for health indices. Variations in metabolic indices (protein concentration and RNA/DNA ratio) for A. spicifera were mainly explained by nitrogen, temperature and zooplankton concentrations under typical conditions, while for A. digitifera, light as well as phytoplankton, in particular picoeukaryotes, were important, possibly due to higher energy requirement for lipid synthesis and storage in A. digitifera. Optimum metabolic values occurred for both Acropora species at 26–28°C when autotrophic indices (chl a and zooxanthellae density) were lowest. The extreme temperature during the La Niña event resulted in a shift of feeding modes, with an increased importance of water column plankton concentrations for metabolic rates of A. digitifera and light and plankton for A. spicifera. Our results suggest that impacts of high sea surface temperatures during extreme events such as La Niña may be mitigated via reduction on metabolic rates in coral host. The high water column plankton concentrations and associated low light levels resulted in a shift towards high symbiont densities, with lower metabolic rates and energy levels than the seasonal norm for the coral host. PMID:23637770

Which environmental factors predict seasonal variation in the coral health of Acropora digitifera and Acropora spicifera at Ningaloo Reef?

Directory of Open Access Journals (Sweden)

Saskia Hinrichs

Full Text Available The impact of physico-chemical factors on percent coral cover and coral health was examined on a spatial basis for two dominant Acropora species, A. digitifera and A. spicifera, at Ningaloo Reef (north-western Australia in the southeast Indian Ocean. Coral health was investigated by measuring metabolic indices (RNA/DNA ratio and protein concentration, energy levels (lipid ratio and autotrophic indices (chlorophyll a (chl a and zooxanthellae density at six stations during typical seasons (austral autumn 2010 (March and April, austral winter 2010 (August and during an extreme La Niña event in summer 2011 (February. These indices were correlated with 15 physico-chemical factors (measured immediately following coral sampling to identify predictors for health indices. Variations in metabolic indices (protein concentration and RNA/DNA ratio for A. spicifera were mainly explained by nitrogen, temperature and zooplankton concentrations under typical conditions, while for A. digitifera, light as well as phytoplankton, in particular picoeukaryotes, were important, possibly due to higher energy requirement for lipid synthesis and storage in A. digitifera. Optimum metabolic values occurred for both Acropora species at 26-28°C when autotrophic indices (chl a and zooxanthellae density were lowest. The extreme temperature during the La Niña event resulted in a shift of feeding modes, with an increased importance of water column plankton concentrations for metabolic rates of A. digitifera and light and plankton for A. spicifera. Our results suggest that impacts of high sea surface temperatures during extreme events such as La Niña may be mitigated via reduction on metabolic rates in coral host. The high water column plankton concentrations and associated low light levels resulted in a shift towards high symbiont densities, with lower metabolic rates and energy levels than the seasonal norm for the coral host.

Study on kinetics of glucose uptake by some species of plankton

Science.gov (United States)

Li, Wenquan; Wang, Xian; Zhang, Yaohua

1993-03-01

The rates of glucose uptake by some species of plankton were determined by3H-glucose tracer method. Experimental results indicated that the observed glucose uptake at natural seawater concentrations by Platymonas subcordiformis and Brachionus plicatilis was principally a metabolic process fitted with the Michaelis-Menten equation in the range of adaptive temperatures. Heterotrophic uptake by Platymonas subcordiformis was mainly dependent on diffusion at high glucose levels. The uptake by Brachionus plicatilis showed active transport even at high glucose levels, indicating its high heterotrophic activity. The uptake rate by Artemia salina was lower, and its V m/K ratio was lower than those of the other two species of plankton.

Examining secular trends and seasonality in count data using dynamic generalized linear modelling: a new methodological approach illustrated with hospital discharge data on myocardial infarction.

Science.gov (United States)

Lundbye-Christensen, S; Dethlefsen, C; Gorst-Rasmussen, A; Fischer, T; Schønheyder, H C; Rothman, K J; Sørensen, H T

2009-01-01

Time series of incidence counts often show secular trends and seasonal patterns. We present a model for incidence counts capable of handling a possible gradual change in growth rates and seasonal patterns, serial correlation, and overdispersion. The model resembles an ordinary time series regression model for Poisson counts. It differs in allowing the regression coefficients to vary gradually over time in a random fashion. During the 1983-1999 period, 17,989 incidents of acute myocardial infarction were recorded in the Hospital Discharge Registry for the county of North Jutland, Denmark. Records were updated daily. A dynamic model with a seasonal pattern and an approximately linear trend was fitted to the data, and diagnostic plots indicated a good model fit. The analysis conducted with the dynamic model revealed peaks coinciding with above-average influenza A activity. On average the dynamic model estimated a higher peak-to-trough ratio than traditional models, and showed gradual changes in seasonal patterns. Analyses conducted with this model provide insights not available from more traditional approaches.

Colonial vs. planktonic type of growth: mathematical modeling of microbial dynamics on surfaces and in liquid, semi-liquid and solid foods.

Science.gov (United States)

Skandamis, Panagiotis N; Jeanson, Sophie

2015-01-01

Predictive models are mathematical expressions that describe the growth, survival, inactivation, or biochemical processes of foodborne bacteria. During processing of contaminated raw materials and food preparation, bacteria are entrapped into the food residues, potentially transferred to the equipment surfaces (abiotic or inert surfaces) or cross-contaminate other foods (biotic surfaces). Growth of bacterial cells can either occur planktonically in liquid or immobilized as colonies. Colonies are on the surface or confined in the interior (submerged colonies) of structured foods. For low initial levels of bacterial population leading to large colonies, the immobilized growth differs from planktonic growth due to physical constrains and to diffusion limitations within the structured foods. Indeed, cells in colonies experience substrate starvation and/or stresses from the accumulation of toxic metabolites such as lactic acid. Furthermore, the micro-architecture of foods also influences the rate and extent of growth. The micro-architecture is determined by (i) the non-aqueous phase with the distribution and size of oil particles and the pore size of the network when proteins or gelling agent are solidified, and by (ii) the available aqueous phase within which bacteria may swarm or swim. As a consequence, the micro-environment of bacterial cells when they grow in colonies might greatly differs from that when they grow planktonically. The broth-based data used for modeling (lag time and generation time, the growth rate, and population level) are poorly transferable to solid foods. It may lead to an over-estimation or under-estimation of the predicted population compared to the observed population in food. If the growth prediction concerns pathogen bacteria, it is a major importance for the safety of foods to improve the knowledge on immobilized growth. In this review, the different types of models are presented taking into account the stochastic behavior of single cells

Quantifying the influence of CO2 seasonality on future ocean acidification

Science.gov (United States)

Sasse, T. P.; McNeil, B. I.; Matear, R. J.; Lenton, A.

2015-04-01

Ocean acidification is a predictable consequence of rising atmospheric carbon dioxide (CO2), and is highly likely to impact the entire marine ecosystem - from plankton at the base to fish at the top. Factors which are expected to be impacted include reproductive health, organism growth and species composition and distribution. Predicting when critical threshold values will be reached is crucial for projecting the future health of marine ecosystems and for marine resources planning and management. The impacts of ocean acidification will be first felt at the seasonal scale, however our understanding how seasonal variability will influence rates of future ocean acidification remains poorly constrained due to current model and data limitations. To address this issue, we first quantified the seasonal cycle of aragonite saturation state utilizing new data-based estimates of global ocean surface dissolved inorganic carbon and alkalinity. This seasonality was then combined with earth system model projections under different emissions scenarios (RCPs 2.6, 4.5 and 8.5) to provide new insights into future aragonite under-saturation onset. Under a high emissions scenario (RCP 8.5), our results suggest accounting for seasonality will bring forward the initial onset of month-long under-saturation by 17 years compared to annual-mean estimates, with differences extending up to 35 ± 17 years in the North Pacific due to strong regional seasonality. Our results also show large-scale under-saturation once atmospheric CO2 reaches 486 ppm in the North Pacific and 511 ppm in the Southern Ocean independent of emission scenario. Our results suggest that accounting for seasonality is critical to projecting the future impacts of ocean acidification on the marine environment.

Antimicrobial Resistance Profile of Planktonic and Biofilm Cells of Staphylococcus aureus and Coagulase-Negative Staphylococci

Directory of Open Access Journals (Sweden)

Adilson de Oliveira

2016-09-01

Full Text Available The objective of the present study was to determine the antimicrobial resistance profile of planktonic and biofilm cells of Staphylococcus aureus and coagulase-negative staphylococci (CoNS. Two hundred Staphylococcus spp. strains were studied, including 50 S. aureus and 150 CoNS strains (50 S. epidermidis, 20 S. haemolyticus, 20 S. warneri, 20 S. hominis, 20 S. lugdunensis, and 20 S. saprophyticus. Biofilm formation was investigated by adherence to polystyrene plates. Positive strains were submitted to the broth microdilution method to determine the minimum inhibitory concentration (MIC for planktonic and biofilm cells and the minimal bactericidal concentration for biofilm cells (MBCB. Forty-nine Staphylococcus spp. strains (14 S. aureus, 13 S. epidermidis, 13 S. saprophyticus, 3 S. haemolyticus, 1 S. hominis, 3 S. warneri, and 2 S. lugdunensis were biofilm producers. These isolates were evaluated regarding their resistance profile. Determination of planktonic cell MIC identified three (21.4% S. aureus strains that were resistant to oxacillin and six (42.8% that were resistant to erythromycin. Among the CoNS, 31 (88.6% strains were resistant to oxacillin, 14 (40% to erythromycin, 18 (51.4% to gentamicin, and 8 (22.8% to sulfamethoxazole/trimethoprim. None of the planktonic isolates were resistant to vancomycin or linezolid. MICs were 2-, 4-, 8-, and up to 16-fold higher for biofilm cells than for planktonic cells. This observation was more common for vancomycin and erythromycin. The MBCB ranged from 8 to >256 µg/mL for oxacillin, 128 to >128 µg/mL for vancomycin, 256 to >256 µg/mL for erythromycin and gentamicin, >64 µg/mL for linezolid, and 32/608 to >32/608 µg/mL for sulfamethoxazole/trimethoprim. The results showed considerably higher MICs for S. aureus and CoNS biofilm cells compared to planktonic cells. Analysis of MBCM confirmed that even high concentrations of vancomycin were unable to eliminate the biofilms of S. aureus and Co

Distribution of planktonic foraminifera in waters of the submarine coral banks in southeast Arabian Sea during winter

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Jayalakshmy, K.V.; Balasubramanian, T.

Twentyfive species of planktonic foraminifera are recorded from 36 plankton tows collected from waters of the submerged coral banks- Bassas de Pedro, Sesostris and Cora Divh-located at northern end of the Laccadive group of islands in southeastern...

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

DEFF Research Database (Denmark)

Carlson, Craig A; Morris, Robert; Parsons, Rachel

2009-01-01

, resolving their temporal dynamics can provide important insights to the cycling of organic and inorganic nutrients. This quantitative time-series data revealed distinct annual distribution patterns of SAR11 abundance in the euphotic (0-120) and upper mesopelagic (160-300 m) zones that were reproducibly...... correlated with seasonal mixing and stratification of the water column. Terminal restriction fragment length polymorphism (T-RFLP) data generated from a decade of samples collected at BATS were combined with the FISH data to model the annual dynamics of SAR11 subclade populations. 16S rRNA gene clone...... the Sargasso Sea surface layer, and revealed new details of their population dynamics....

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition.

Science.gov (United States)

Alberti, Adriana; Poulain, Julie; Engelen, Stefan; Labadie, Karine; Romac, Sarah; Ferrera, Isabel; Albini, Guillaume; Aury, Jean-Marc; Belser, Caroline; Bertrand, Alexis; Cruaud, Corinne; Da Silva, Corinne; Dossat, Carole; Gavory, Frédérick; Gas, Shahinaz; Guy, Julie; Haquelle, Maud; Jacoby, E'krame; Jaillon, Olivier; Lemainque, Arnaud; Pelletier, Eric; Samson, Gaëlle; Wessner, Mark; Acinas, Silvia G; Royo-Llonch, Marta; Cornejo-Castillo, Francisco M; Logares, Ramiro; Fernández-Gómez, Beatriz; Bowler, Chris; Cochrane, Guy; Amid, Clara; Hoopen, Petra Ten; De Vargas, Colomban; Grimsley, Nigel; Desgranges, Elodie; Kandels-Lewis, Stefanie; Ogata, Hiroyuki; Poulton, Nicole; Sieracki, Michael E; Stepanauskas, Ramunas; Sullivan, Matthew B; Brum, Jennifer R; Duhaime, Melissa B; Poulos, Bonnie T; Hurwitz, Bonnie L; Pesant, Stéphane; Karsenti, Eric; Wincker, Patrick

2017-08-01

A unique collection of oceanic samples was gathered by the Tara Oceans expeditions (2009-2013), targeting plankton organisms ranging from viruses to metazoans, and providing rich environmental context measurements. Thanks to recent advances in the field of genomics, extensive sequencing has been performed for a deep genomic analysis of this huge collection of samples. A strategy based on different approaches, such as metabarcoding, metagenomics, single-cell genomics and metatranscriptomics, has been chosen for analysis of size-fractionated plankton communities. Here, we provide detailed procedures applied for genomic data generation, from nucleic acids extraction to sequence production, and we describe registries of genomics datasets available at the European Nucleotide Archive (ENA, www.ebi.ac.uk/ena). The association of these metadata to the experimental procedures applied for their generation will help the scientific community to access these data and facilitate their analysis. This paper complements other efforts to provide a full description of experiments and open science resources generated from the Tara Oceans project, further extending their value for the study of the world's planktonic ecosystems.

Addressing the impact of environmental uncertainty in plankton model calibration with a dedicated software system: the Marine Model Optimization Testbed (MarMOT 1.1 alpha)

Science.gov (United States)

Hemmings, J. C. P.; Challenor, P. G.

2012-04-01

A wide variety of different plankton system models have been coupled with ocean circulation models, with the aim of understanding and predicting aspects of environmental change. However, an ability to make reliable inferences about real-world processes from the model behaviour demands a quantitative understanding of model error that remains elusive. Assessment of coupled model output is inhibited by relatively limited observing system coverage of biogeochemical components. Any direct assessment of the plankton model is further inhibited by uncertainty in the physical state. Furthermore, comparative evaluation of plankton models on the basis of their design is inhibited by the sensitivity of their dynamics to many adjustable parameters. Parameter uncertainty has been widely addressed by calibrating models at data-rich ocean sites. However, relatively little attention has been given to quantifying uncertainty in the physical fields required by the plankton models at these sites, and tendencies in the biogeochemical properties due to the effects of horizontal processes are often neglected. Here we use model twin experiments, in which synthetic data are assimilated to estimate a system's known "true" parameters, to investigate the impact of error in a plankton model's environmental input data. The experiments are supported by a new software tool, the Marine Model Optimization Testbed, designed for rigorous analysis of plankton models in a multi-site 1-D framework. Simulated errors are derived from statistical characterizations of the mixed layer depth, the horizontal flux divergence tendencies of the biogeochemical tracers and the initial state. Plausible patterns of uncertainty in these data are shown to produce strong temporal and spatial variability in the expected simulation error variance over an annual cycle, indicating variation in the significance attributable to individual model-data differences. An inverse scheme using ensemble-based estimates of the

Long-Term Effects of Season of Prescribed Burn on the Fine-Root Growth, Root Carbohydrates, and Foliar Dynamics of Mature Longleaf Pine

Science.gov (United States)

Eric A. Kuehler; Mary Anne Sword Sayer; James D. Haywood; C. Dan Andries

2004-01-01

Depending on the season and intensity of fire, as well as the phenology of foliage and new root growth, fire may damage foliage, and subsequently decrease whole-crown carbon fixation and allocation to the root system. In central Louisiana the authors investigated how season of prescribed burning affects fine-root dynamics, root carbohydrate relations, and leaf area...

Hydromechanical signals in the plankton

DEFF Research Database (Denmark)

Visser, Andre

2001-01-01

The distance at which plankters can detect and thus interact with each other depends on their sensitivity, size, and motion, as well as the hydrodynamic characteristics of their behaviour. Through a simple consideration of the distribution of forces exerted on the ambient fluid by different...... proportional to a(3)Ur(-3). Within this context, observed planktonic interactions, particularly for copepods, were analysed and showed reasonably good support for the theory. The remote detection of inert particles by feeding-current-generating and free-swimming copepods was found to be feasible for known...... swimming ciliates under turbulent conditions showed good agreement with previously reported observations....

Seasonal dynamics of the tick Haemaphysalis tibetensis in the Tibetan Plateau, China.

Science.gov (United States)

Liu, M; Li, T; Yu, Z J; Qiu, Z X; Yan, P; Li, Y; Liu, J

2017-12-01

The tick Haemaphysalis tibetensis (Acari: Ixodidae) Hoogstraal is an important arthropod vector widespread in the Qinghai-Tibet Plateau, and knowledge of its seasonal dynamics is still poor. The current study investigated the seasonal dynamics of the parasitic and non-parasitic H. tibetensis over a 2-year period from March 2014 to February 2016 in the Tibetan Plateau, China. During this timeframe, non-parasitic ticks were collected weekly by flag-dragging in grassland and shrubland areas, and parasitic ticks were removed weekly from selected sheep. Plateau pikas were captured using traps and examined for immature ticks between May to September 2014. Results suggest that non-parasitic H. tibetensis were mainly distributed in the grassland, and the parasitic adults and nymphs were found mostly on sheep. Larvae were usually found on Plateau pikas and the prevalence of infestation and mean parasitic intensity were 72.1 and 1.81%, respectively. Adults were observed from March to July with the major peak occurring in mid-April. Nymphs were found from March to August and reached a peak in late June. Larvae were collected from April to September, and their numbers peaked in late May. In the parasitic and non-parasitic period, the overall sex ratio of males to females was 1.62 and 1.30, respectively. Results show that H. tibetensis can complete one generation per year, with a population overlap between stages over the spring-summer months. These findings provide additional information on the biology and ecology of H. tibetensis as well as insights on its control in the environment and on sheep. © 2017 The Royal Entomological Society.

Seasonally-Dynamic Presence-Only Species Distribution Models for a Cryptic Migratory Bat Impacted by Wind Energy Development.

Directory of Open Access Journals (Sweden)

Mark A Hayes

Full Text Available Understanding seasonal distribution and movement patterns of animals that migrate long distances is an essential part of monitoring and conserving their populations. Compared to migratory birds and other more conspicuous migrants, we know very little about the movement patterns of many migratory bats. Hoary bats (Lasiurus cinereus, a cryptic, wide-ranging, long-distance migrant, comprise a substantial proportion of the tens to hundreds of thousands of bat fatalities estimated to occur each year at wind turbines in North America. We created seasonally-dynamic species distribution models (SDMs from 2,753 museum occurrence records collected over five decades in North America to better understand the seasonal geographic distributions of hoary bats. We used 5 SDM approaches: logistic regression, multivariate adaptive regression splines, boosted regression trees, random forest, and maximum entropy and consolidated outputs to generate ensemble maps. These maps represent the first formal hypotheses for sex- and season-specific hoary bat distributions. Our results suggest that North American hoary bats winter in regions with relatively long growing seasons where temperatures are moderated by proximity to oceans, and then move to the continental interior for the summer. SDMs suggested that hoary bats are most broadly distributed in autumn-the season when they are most susceptible to mortality from wind turbines; this season contains the greatest overlap between potentially suitable habitat and wind energy facilities. Comparing wind-turbine fatality data to model outputs could test many predictions, such as 'risk from turbines is highest in habitats between hoary bat summering and wintering grounds'. Although future field studies are needed to validate the SDMs, this study generated well-justified and testable hypotheses of hoary bat migration patterns and seasonal distribution.

Seasonally-Dynamic Presence-Only Species Distribution Models for a Cryptic Migratory Bat Impacted by Wind Energy Development.

Science.gov (United States)

Hayes, Mark A; Cryan, Paul M; Wunder, Michael B

2015-01-01

Understanding seasonal distribution and movement patterns of animals that migrate long distances is an essential part of monitoring and conserving their populations. Compared to migratory birds and other more conspicuous migrants, we know very little about the movement patterns of many migratory bats. Hoary bats (Lasiurus cinereus), a cryptic, wide-ranging, long-distance migrant, comprise a substantial proportion of the tens to hundreds of thousands of bat fatalities estimated to occur each year at wind turbines in North America. We created seasonally-dynamic species distribution models (SDMs) from 2,753 museum occurrence records collected over five decades in North America to better understand the seasonal geographic distributions of hoary bats. We used 5 SDM approaches: logistic regression, multivariate adaptive regression splines, boosted regression trees, random forest, and maximum entropy and consolidated outputs to generate ensemble maps. These maps represent the first formal hypotheses for sex- and season-specific hoary bat distributions. Our results suggest that North American hoary bats winter in regions with relatively long growing seasons where temperatures are moderated by proximity to oceans, and then move to the continental interior for the summer. SDMs suggested that hoary bats are most broadly distributed in autumn-the season when they are most susceptible to mortality from wind turbines; this season contains the greatest overlap between potentially suitable habitat and wind energy facilities. Comparing wind-turbine fatality data to model outputs could test many predictions, such as 'risk from turbines is highest in habitats between hoary bat summering and wintering grounds'. Although future field studies are needed to validate the SDMs, this study generated well-justified and testable hypotheses of hoary bat migration patterns and seasonal distribution.

Seasonally-dynamic presence-only species distribution models for a cryptic migratory bat impacted by wind energy development

Science.gov (United States)

Hayes, Mark A.; Cryan, Paul M.; Wunder, Michael B.

2015-01-01

Understanding seasonal distribution and movement patterns of animals that migrate long distances is an essential part of monitoring and conserving their populations. Compared to migratory birds and other more conspicuous migrants, we know very little about the movement patterns of many migratory bats. Hoary bats (Lasiurus cinereus), a cryptic, wide-ranging, long-distance migrant, comprise a substantial proportion of the tens to hundreds of thousands of bat fatalities estimated to occur each year at wind turbines in North America. We created seasonally-dynamic species distribution models (SDMs) from 2,753 museum occurrence records collected over five decades in North America to better understand the seasonal geographic distributions of hoary bats. We used 5 SDM approaches: logistic regression, multivariate adaptive regression splines, boosted regression trees, random forest, and maximum entropy and consolidated outputs to generate ensemble maps. These maps represent the first formal hypotheses for sex- and season-specific hoary bat distributions. Our results suggest that North American hoary bats winter in regions with relatively long growing seasons where temperatures are moderated by proximity to oceans, and then move to the continental interior for the summer. SDMs suggested that hoary bats are most broadly distributed in autumn—the season when they are most susceptible to mortality from wind turbines; this season contains the greatest overlap between potentially suitable habitat and wind energy facilities. Comparing wind-turbine fatality data to model outputs could test many predictions, such as ‘risk from turbines is highest in habitats between hoary bat summering and wintering grounds’. Although future field studies are needed to validate the SDMs, this study generated well-justified and testable hypotheses of hoary bat migration patterns and seasonal distribution.

ABUNDANCE AND ISOTOPIC COMPOSITION OF PLANKTONIC MICROCRUSTACEANS IN A CENTRAL AMAZON FLOODPLAIN LAKE: IMPLICATIONS FOR THE TROPHIC DYNAMICS OF THE PLANKTON COMMUNITY

Directory of Open Access Journals (Sweden)

Pedro Caraballo

2016-01-01

Full Text Available During the hydrological year from December 2007 to November 2008, monthly samplings in the pelagic, littoral and macrophytes zones were conducted in the Lago Catalão, a floodplain lake receiving a mixture of water from Negro and Solimões Rivers, in front of Manaus city. Taxonomic composition and their relative abundance of the planktonic microcrustaceans community was studied. Natural abundances of carbon (C and nitrogen (N stable isotopes were measured to indicate energy sources. Cladocerans were the most abundant, with a relative abundance of 60%, followed by the calanoid and cyclopoid copepods with relative abundances of 29% and 11%, respectively. Diaphanosoma spp. was the dominant cladoceran group during all the sampling periods. Cladocerans were also represented by Moina spp., Ceriodaphnia spp. and Daphnia gessneri. Three genera of calanoid copepods were found: Notodiaptomus spp, Rhacodiaptomus spp., and Argyrodiaptomus spp. The genus Mesocyclops spp. was identified among the cyclopoid copepods. Zooplankton δ13C values indicated that the aquatic macrophyte zone was distinct, with a mean of -27.31‰, which was more enriched than zooplankton in the pelagic and littoral zones, where they had mean δ13C values of -33.11 and -34.66‰, respectively. Overall, analysis of stable isotopes showed that regardless of the pathways, the initial source of carbon for the zooplankton was phytoplankton, with a minimal participation of heterotrophic bacteria.

Planktonic Biodiversity of Bhoj Wetland, Bhopal, India | Neelam ...

African Journals Online (AJOL)

Biodiversity found on Earth today consists of many millions of distinct biological species, which is the product of nearly 3.5 billion years of evolution. This article deals with planktonic distribution of Bhoj Wetland, Bhopal, India . Bhoj Wetland comprises of two lakes i.e. Upper and Lower lakes of Bhopal. The Upper lake is ...

Changes in Microbial Plankton Assemblages Induced by Mesoscale Oceanographic Features in the Northern Gulf of Mexico.

Directory of Open Access Journals (Sweden)

Alicia K Williams

Full Text Available Mesoscale circulation generated by the Loop Current in the Northern Gulf of Mexico (NGOM delivers growth-limiting nutrients to the microbial plankton of the euphotic zone. Consequences of physicochemically driven community shifts on higher order consumers and subsequent impacts on the biological carbon pump remain poorly understood. This study evaluates microbial plankton <10 μm abundance and community structure across both cyclonic and anti-cyclonic circulation features in the NGOM using flow cytometry (SYBR Green I and autofluorescence parameters. Non-parametric multivariate hierarchical cluster analyses indicated that significant spatial variability in community structure exists such that stations that clustered together were defined as having a specific 'microbial signature' (i.e. statistically homogeneous community structure profiles based on relative abundance of microbial groups. Salinity and a combination of sea surface height anomaly and sea surface temperature were determined by distance based linear modeling to be abiotic predictor variables significantly correlated to changes in microbial signatures. Correlations between increased microbial abundance and availability of nitrogen suggest nitrogen-limitation of microbial plankton in this open ocean area. Regions of combined coastal water entrainment and mesoscale convergence corresponded to increased heterotrophic prokaryote abundance relative to autotrophic plankton. The results provide an initial assessment of how mesoscale circulation potentially influences microbial plankton abundance and community structure in the NGOM.

Limits to gene flow in a cosmopolitan marine planktonic diatom.

Science.gov (United States)

Casteleyn, Griet; Leliaert, Frederik; Backeljau, Thierry; Debeer, Ann-Eline; Kotaki, Yuichi; Rhodes, Lesley; Lundholm, Nina; Sabbe, Koen; Vyverman, Wim

2010-07-20

The role of geographic isolation in marine microbial speciation is hotly debated because of the high dispersal potential and large population sizes of planktonic microorganisms and the apparent lack of strong dispersal barriers in the open sea. Here, we show that gene flow between distant populations of the globally distributed, bloom-forming diatom species Pseudo-nitzschia pungens (clade I) is limited and follows a strong isolation by distance pattern. Furthermore, phylogenetic analysis implies that under appropriate geographic and environmental circumstances, like the pronounced climatic changes in the Pleistocene, population structuring may lead to speciation and hence may play an important role in diversification of marine planktonic microorganisms. A better understanding of the factors that control population structuring is thus essential to reveal the role of allopatric speciation in marine microorganisms.

Diversity in plant hydraulic traits explains seasonal and inter-annual variations of vegetation dynamics in seasonally dry tropical forests.

Science.gov (United States)

Xu, Xiangtao; Medvigy, David; Powers, Jennifer S; Becknell, Justin M; Guan, Kaiyu

2016-10-01

We assessed whether diversity in plant hydraulic traits can explain the observed diversity in plant responses to water stress in seasonally dry tropical forests (SDTFs). The Ecosystem Demography model 2 (ED2) was updated with a trait-driven mechanistic plant hydraulic module, as well as novel drought-phenology and plant water stress schemes. Four plant functional types were parameterized on the basis of meta-analysis of plant hydraulic traits. Simulations from both the original and the updated ED2 were evaluated against 5 yr of field data from a Costa Rican SDTF site and remote-sensing data over Central America. The updated model generated realistic plant hydraulic dynamics, such as leaf water potential and stem sap flow. Compared with the original ED2, predictions from our novel trait-driven model matched better with observed growth, phenology and their variations among functional groups. Most notably, the original ED2 produced unrealistically small leaf area index (LAI) and underestimated cumulative leaf litter. Both of these biases were corrected by the updated model. The updated model was also better able to simulate spatial patterns of LAI dynamics in Central America. Plant hydraulic traits are intercorrelated in SDTFs. Mechanistic incorporation of plant hydraulic traits is necessary for the simulation of spatiotemporal patterns of vegetation dynamics in SDTFs in vegetation models. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Dynamic ankle stability and ankle sprain occurrence in elite ball team athletes : a one season prospective study

NARCIS (Netherlands)

Chris Visscher; Anne Benjaminse; Koen A.P.M. Lemmink; Msc Henrike van der Does; Michel Brink; Joan Dallinga

2013-01-01

To compare the dynamic stability index (DSI) measured at baseline between elite ball team athletes with and without an ankle sprain during the season. Methods Forty-four elite male (age:22.5±3.6yr,height:193.7±8.0cm,mass:87.1±10.9kg) and eighteen female

Seasonal dynamics of microbiological indices of water in the Ingulets and Berezovka rivers under different antropogenic burden

OpenAIRE

N. B. Esipova; V. А. Zhezherya

2007-01-01

The seasonal dynamics of microbiological indices of sanitary situation in Ingulets and Berezovka Rivers was analysed at spring-autumn period. The sanitary mapping of the rivers was done for the Alexandria area. In most cases maximal level of the rivers contamination by the lactose-positive E. coli index was found in August.

Global marine plankton functional type biomass distributions : Phaeocystis spp

NARCIS (Netherlands)

Vogt, M.; O'Brien, C.; Peloquin, J.; Schoemann, V.; Breton, E.; Estrada, M.; Gibson, J.; Karentz, D.; van Leeuwe, M. A.; Stefels, J.; Widdicombe, C.; Peperzak, L.

2012-01-01

The planktonic haptophyte Phaeocystis has been suggested to play a fundamental role in the global biogeochemical cycling of carbon and sulphur, but little is known about its global biomass distribution. We have collected global microscopy data of the genus Phaeocystis and converted abundance data to

Competition between autotrophic and heterotrophic microbial plankton for inorganic nutrients induced by variability in estuarine biophysicochemical conditions

Science.gov (United States)

Williams, A.; Quigg, A.

2016-02-01

Competition for inorganic nutrients between autotrophic and heterotrophic fractions of microbial plankton (0.2-20μm) was investigated at two stations in a sub-tropical estuary, Galveston Bay, Texas. Competition potential between these groups is enhanced because individuals are similar in size, reducing variability among their nutrient uptake efficiencies. Further, in estuaries, allochthonous supplements to autochthonous carbon may satisfy heterotrophic requirements, allowing alternative factors to limit abundance. The relative abundance of autotrophs and heterotrophs stained with SYBR Green I and enumerated on a Beckman Coulter Gallios flow cytometer were evaluated monthly during a year-long study. Shifts in the relative in situ abundance were significantly related to temperature, dissolved inorganic nitrogen (DIN), phosphorous (Pi), and total organic carbon (TOC) concentrations revealing opposing gradients of limitation by different abiotic factors. In corresponding in vitro nutrient enrichment bioassays the relative contribution of autotrophic or heterotrophic microbial plankton to significant enrichment responses varied. Only during macro- (>20μm) phytoplankton blooms do autotrophic microbial plankton respond to nutrient enrichment. Contrastingly, the heterotrophic microbial plankton responded to nutrient enrichment primarily when temperature limitation was alleviated. Therefore, the potential for autotrophic and heterotrophic microbial plankton competition for limiting nutrients is highest when autotrophic microbial plankton are also competing with larger phytoplankton during bloom events. Based on this evidence, we hypothesize that the autotrophic microbial fraction has a competitive advantage over the heterotrophs for inorganic nutrients in Galveston Bay. The observed microbial competition during estuarine phytoplankton blooms may have important consequences on biogeochemical processes including carbon and nutrient cycling.

Recent planktonic foraminifera from the sediment off Karwar and Mangalore

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.; Guptha, M.V.S.

Eleven samples collected from the shelf-slope regions off Karwar and mangalore transects of the Arabian Sea, yielded fifteen planktonic foraminiferal species, which are identified and described. There is a progressive increase in the percentage...

Seasonal and spatial trends in production and stable isotope signatures of primary producers in Alberta oil sands reclamation wetlands

International Nuclear Information System (INIS)

Boutsivongsakd, M; Chen, H.; Legg, A.; Farwell, A.; Dixon, G.

2010-01-01

Oil sands processing produces large amounts of waste water that contains polycyclic aromatic hydrocarbons (PAHs) and naphthenic acids (NAs). This study investigated the effects of exposure to PAHs and NA in aquatic organisms. The carbon and nitrogen dynamics in primary producers using stable isotopes in process-affected and reference wetlands were studied. Plankton and periphytic samples from artificial wetland substrates were collected and analyzed. Periphyton was collected in 14 to 20 day intervals for 5 different time periods in 2007 and 2008 in order to analyze seasonal trends in isotopic composition. Results of the study showed d15N enriched values for some consolidated tailings (CT) at sites in 2008. Other sites with mature fine tailings (MFT) as well as non-MFT sites did not have enriched d15N values. The study suggested that there are variations in ammonia levels in the CTs of different oil sands operators. Differences in the quality of the CT resulted in differences in d15N values of the periphyton-dominated by algae as well as in the periphyton dominated by microbes.

Spatial and temporal variability of planktonic archaeal abundance in the Humboldt Current System off Chile

Science.gov (United States)

Quiñones, Renato A.; Levipan, Héctor A.; Urrutia, Homero

2009-07-01

The latest advances in the field of microbial ecology have shown that planktonic Archaea are one of the most abundant unicellular microorganisms of the oceans. However, no information is available on the contribution this group makes to the prokaryote assemblages that inhabit the eastern South Pacific Ocean. Here, we describe the relative abundance and vertical distribution of planktonic Archaea off northern and central-southern Chile. Data come from several cruises and a 45-month time series at a station located on the shelf off central-southern Chile. Both the taxonomic composition of the prokaryote community and its relative abundance were determined using quantitative dot blot 16S-rRNA hybridizations. Total Archaea in central-southern Chile made up 6-87% of the prokaryote rRNA in the water column and did not present evidence of any seasonal pattern. Crenarchaea were the most abundant archaeal group at this site and were significantly associated with the ammonium concentration ( r2=0.16, p=0.0003, n=80). Archaeal abundance in the time series was usually greater in the deeper layer (>50 m), with contributions reaching up to ˜90% of the prokaryote rRNA on certain occasions, and decreasing towards the surface. Important increments in the relative abundance of total Archaea were observed on given dates at the surface of the time-series station off central-southern Chile. Off northern Chile, total Archaea normally contributed from ˜10% to 50% of the prokaryote rRNA found between 10 and 1000 m, and were generally important in the mesopelagic realm. Our results indicate that Archaea constitute an important fraction of the prokaryote assemblage in the water column of the Humboldt Current System, especially in the oxygen minimum zone.

Persistent organic pollutants in Mediterranean seawater and processes affecting their accumulation in plankton.

Science.gov (United States)

Berrojalbiz, Naiara; Dachs, Jordi; Del Vento, Sabino; Ojeda, María José; Valle, María Carmen; Castro-Jiménez, Javier; Mariani, Giulio; Wollgast, Jan; Hanke, Georg

2011-05-15

The Mediterranean and Black Seas are unique marine environments subject to important anthropogenic pressures due to riverine and atmospheric inputs of organic pollutants. Here, we report the results obtained during two east-west sampling cruises in June 2006 and May 2007 from Barcelona to Istanbul and Alexandria, respectively, where water and plankton samples were collected simultaneously. Both matrixes were analyzed for hexaclorochyclohexanes (HCHs), hexachlorobenzene (HCB), and 41 polychlorinated biphenyl (PCB) congeners. The comparison of the measured HCB and HCHs concentrations with previously reported dissolved phase concentrations suggests a temporal decline in their concentrations since the 1990s. On the contrary, PCB seawater concentrations did not exhibit such a decline, but show a significant spatial variability in dissolved concentrations with lower levels in the open Western and South Eastern Mediterranean, and higher concentrations in the Black, Marmara, and Aegean Seas and Sicilian Strait. PCB and OCPs (organochlorine pesticides) concentrations in plankton were higher at lower plankton biomass, but the intensity of this trend depended on the compound hydrophobicity (K(OW)). For the more persistent PCBs and HCB, the observed dependence of POP concentrations in plankton versus biomass can be explained by interactions between air-water exchange, particle settling, and/or bioaccumulation processes, whereas degradation processes occurring in the photic zone drive the trends shown by the more labile HCHs. The results presented here provide clear evidence of the important physical and biogeochemical controls on POP occurrence in the marine environment.

Plankton motility patterns and encounter rates

DEFF Research Database (Denmark)

Visser, Andre; Kiørboe, Thomas

2006-01-01

measure of run length to reaction distance determines whether the underlying encounter is ballistic or diffusive. Since ballistic interactions are intrinsically more efficient than diffusive, we predict that organisms will display motility with long correlation run lengths compared to their reaction...... distances to their prey, but short compared to the reaction distances of their predators. We show motility data for planktonic organisms ranging from bacteria to copepods that support this prediction. We also present simple ballistic and diffusive motility models for estimating encounter rates, which lead...

Mercury methylation rates of biofilm and plankton microorganisms from a hydroelectric reservoir in French Guiana.

Science.gov (United States)

Huguet, L; Castelle, S; Schäfer, J; Blanc, G; Maury-Brachet, R; Reynouard, C; Jorand, F

2010-02-15

The Petit-Saut ecosystem is a hydroelectric reservoir covering 365km(2) of flooded tropical forest. This reservoir and the Sinnamary Estuary downstream of the dam are subject to significant mercury methylation. The mercury methylation potential of plankton and biofilm microorganisms/components from different depths in the anoxic reservoir water column and from two different sites along the estuary was assessed. For this, reservoir water and samples of epiphytic biofilms from the trunk of a submerged tree in the anoxic water column and from submerged branches in the estuary were batch-incubated from 1h to 3 months with a nominal 1000ng/L spike of Hg(II) chloride enriched in (199)Hg. Methylation rates were determined for different reservoir and estuarine communities under natural nutrient (reservoir water, estuary freshwater) and artificial nutrient (culture medium) conditions. Methylation rates in reservoir water incubations were the highest with plankton microorganisms sampled at -9.5m depth (0.5%/d) without addition of biofilm components. Mercury methylation rates of incubated biofilm components were strongly enhanced by nutrient addition. The results suggested that plankton microorganisms strongly contribute to the total Hg methylation in the Petit-Saut reservoir and in the Sinnamary Estuary. Moreover, specific methylation efficiencies (%Me(199)Hg(net)/cell) suggested that plankton microorganisms could be more efficient methylating actors than biofilm consortia and that their methylation efficiency may be reduced in the presence of biofilm components. Extrapolation to the reservoir scale of the experimentally determined preliminary methylation efficiencies suggested that plankton microorganisms in the anoxic water column could produce up to 27mol MeHg/year. Taking into account that (i) demethylation probably occurs in the reservoir and (ii) that the presence of biofilm components may limit the methylation efficiency of plankton microorganisms, this result is

Plankton networks driving carbon export in the oligotrophic ocean

Science.gov (United States)

Larhlimi, Abdelhalim; Roux, Simon; Darzi, Youssef; Audic, Stephane; Berline, Léo; Brum, Jennifer; Coelho, Luis Pedro; Espinoza, Julio Cesar Ignacio; Malviya, Shruti; Sunagawa, Shinichi; Dimier, Céline; Kandels-Lewis, Stefanie; Picheral, Marc; Poulain, Julie; Searson, Sarah; Stemmann, Lars; Not, Fabrice; Hingamp, Pascal; Speich, Sabrina; Follows, Mick; Karp-Boss, Lee; Boss, Emmanuel; Ogata, Hiroyuki; Pesant, Stephane; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia G.; Bork, Peer; de Vargas, Colomban; Iudicone, Daniele; Sullivan, Matthew B.; Raes, Jeroen; Karsenti, Eric; Bowler, Chris; Gorsky, Gabriel

2015-01-01

The biological carbon pump is the process by which CO2 is transformed to organic carbon via photosynthesis, exported through sinking particles, and finally sequestered in the deep ocean. While the intensity of the pump correlates with plankton community composition, the underlying ecosystem structure driving the process remains largely uncharacterised. Here we use environmental and metagenomic data gathered during the Tara Oceans expedition to improve our understanding of carbon export in the oligotrophic ocean. We show that specific plankton communities, from the surface and deep chlorophyll maximum, correlate with carbon export at 150 m and highlight unexpected taxa such as Radiolaria, alveolate parasites, as well as Synechococcus and their phages, as lineages most strongly associated with carbon export in the subtropical, nutrient-depleted, oligotrophic ocean. Additionally, we show that the relative abundance of just a few bacterial and viral genes can predict most of the variability in carbon export in these regions. PMID:26863193

Plankton networks driving carbon export in the oligotrophic ocean

Science.gov (United States)

2016-04-01

The biological carbon pump is the process by which CO2 is transformed to organic carbon via photosynthesis, exported through sinking particles, and finally sequestered in the deep ocean. While the intensity of the pump correlates with plankton community composition, the underlying ecosystem structure driving the process remains largely uncharacterized. Here we use environmental and metagenomic data gathered during the Tara Oceans expedition to improve our understanding of carbon export in the oligotrophic ocean. We show that specific plankton communities, from the surface and deep chlorophyll maximum, correlate with carbon export at 150 m and highlight unexpected taxa such as Radiolaria and alveolate parasites, as well as Synechococcus and their phages, as lineages most strongly associated with carbon export in the subtropical, nutrient-depleted, oligotrophic ocean. Additionally, we show that the relative abundance of a few bacterial and viral genes can predict a significant fraction of the variability in carbon export in these regions.

Living planktonic foraminifera of the Wadge bank, Northern Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Rao, K.K.; Jayalakshmy, K.V.; Panikkar, B.M.; Kutty, M.K.

Twenty three species of living planktonic Foraminifera belonging to 11 genera have been studied from the Wadge Bank area off southern tip of the Indian peninsula. The fauna is characterized by species such as Globigerinoides conglobatus, G...

Planktonic food webs revisited: Reanalysis of results from the linear inverse approach

Science.gov (United States)

Hlaili, Asma Sakka; Niquil, Nathalie; Legendre, Louis

2014-01-01

Identification of the trophic pathway that dominates a given planktonic assemblage is generally based on the distribution of biomasses among food-web compartments, or better, the flows of materials or energy among compartments. These flows are obtained by field observations and a posteriori analyses, including the linear inverse approach. In the present study, we re-analysed carbon flows obtained by inverse analysis at 32 stations in the global ocean and one large lake. Our results do not support two "classical" views of plankton ecology, i.e. that the herbivorous food web is dominated by mesozooplankton grazing on large phytoplankton, and the microbial food web is based on microzooplankton significantly consuming bacteria; our results suggest instead that phytoplankton are generally grazed by microzooplankton, of which they are the main food source. Furthermore, we identified the "phyto-microbial food web", where microzooplankton largely feed on phytoplankton, in addition to the already known "poly-microbial food web", where microzooplankton consume more or less equally various types of food. These unexpected results led to a (re)definition of the conceptual models corresponding to the four trophic pathways we found to exist in plankton, i.e. the herbivorous, multivorous, and two types of microbial food web. We illustrated the conceptual trophic pathways using carbon flows that were actually observed at representative stations. The latter can be calibrated to correspond to any field situation. Our study also provides researchers and managers with operational criteria for identifying the dominant trophic pathway in a planktonic assemblage, these criteria being based on the values of two carbon ratios that could be calculated from flow values that are relatively easy to estimate in the field.

Comparison of benthos and plankton for selected areas of concern and non-areas of concern in western Lake Michigan Rivers and Harbors in 2012

Science.gov (United States)

Eikenberry, Barbara C. Scudder; Bell, Amanda H.; Olds, Hayley T.; Burns, Daniel J.

2016-07-25

Recent data are lacking to assess whether impairments still exist at four of Wisconsin’s largest Lake Michigan harbors that were designated as Areas of Concern (AOCs) in the late 1980s due to sediment contamination and multiple Beneficial Use Impairments (BUIs), such as those affecting benthos (macroinvertebrates) and plankton (zooplankton and phytoplankton) communities. During three seasonal sampling events (“seasons”) in May through August 2012, the U.S. Geological Survey collected sediment benthos and water plankton at the four AOCs as well as six less-degraded non-AOCs along the western Lake Michigan shoreline to assess whether AOC communities were degraded in comparison to non-AOC communities. The four AOCs are the Lower Menominee River, the Lower Green Bay and Fox River, the Sheboygan River, and the Milwaukee Estuary. Due to their size and complexity, multiple locations or “subsites” were sampled within the Lower Green Bay and Fox River AOC (Lower Green Bay, the Fox River near Allouez, and the Fox River near De Pere) and within the Milwaukee Estuary AOC (the Milwaukee River, the Menomonee River, and the Milwaukee Harbor) and single locations were sampled at the other AOCs and non-AOCs. The six non-AOCs are the Escanaba River in Michigan, and the Oconto River, Ahnapee River, Kewaunee River, Manitowoc River, and Root River in Wisconsin. Benthos samples were collected by using Hester-Dendy artificial substrates deployed for 30 days and by using a dredge sampler; zooplankton were collected by net and phytoplankton by whole-water sampler. Except for the Lower Green Bay and Milwaukee Harbor locations, communities at each AOC were compared to all non-AOCs as a group and to paired non-AOCs using taxa relative abundances and metrics, including richness, diversity, and an Index of Biotic Integrity (IBI, for Hester-Dendy samples only). Benthos samples collected during one or more seasons were rated as degraded for at least one metric at all AOCs. In the

Post-1980 shifts in the sensitivity of boreal tree growth to North Atlantic Ocean dynamics and seasonal climate. Tree growth responses to North Atlantic Ocean dynamics

Science.gov (United States)

Ols, Clémentine; Trouet, Valerie; Girardin, Martin P.; Hofgaard, Annika; Bergeron, Yves; Drobyshev, Igor

2018-06-01

The mid-20th century changes in North Atlantic Ocean dynamics, e.g. slow-down of the Atlantic meridional overturning thermohaline circulation (AMOC), have been considered as early signs of tipping points in the Earth climate system. We hypothesized that these changes have significantly altered boreal forest growth dynamics in northeastern North America (NA) and northern Europe (NE), two areas geographically adjacent to the North Atlantic Ocean. To test our hypothesis, we investigated tree growth responses to seasonal large-scale oceanic and atmospheric indices (the AMOC, North Atlantic Oscillation (NAO), and Arctic Oscillation (AO)) and climate (temperature and precipitation) from 1950 onwards, both at the regional and local levels. We developed a network of 6876 black spruce (NA) and 14437 Norway spruce (NE) tree-ring width series, extracted from forest inventory databases. Analyses revealed post-1980 shifts from insignificant to significant tree growth responses to summer oceanic and atmospheric dynamics both in NA (negative responses to NAO and AO indices) and NE (positive response to NAO and AMOC indices). The strength and sign of these responses varied, however, through space with stronger responses in western and central boreal Quebec and in central and northern boreal Sweden, and across scales with stronger responses at the regional level than at the local level. Emerging post-1980 associations with North Atlantic Ocean dynamics synchronized with stronger tree growth responses to local seasonal climate, particularly to winter temperatures. Our results suggest that ongoing and future anomalies in oceanic and atmospheric dynamics may impact forest growth and carbon sequestration to a greater extent than previously thought. Cross-scale differences in responses to North Atlantic Ocean dynamics highlight complex interplays in the effects of local climate and ocean-atmosphere dynamics on tree growth processes and advocate for the use of different spatial scales in

Seasonal distribution and uptake of gamma emitting radionuclides at the test reactor area leaching ponds

International Nuclear Information System (INIS)

Millard, J.B.

1986-01-01

Radioactive leaching ponds adjacent to the Test Reactor Area (TRA) located on the Idaho National Engineering Laboratory (INEL) site were investigated to determine the seasonal distribution and ecological behavior of gamma emitting radionuclides in various pond compartments. The physical, chemical and biological properties of the TRA ponds were documented including basic morphometry, water chemistry and species identification. Penetrating radiation exposure rates at the ponds ranged from 35 to 65 mR/d at the water surface and up to 3400 mR/d one meter above bottom sediments. Seasonal concentrations and concentration ratios were determined for 16 principle radionuclides in filtered water, sediment, seston, zooplankton, net plankton, nannoplankton, periphyton, macrophytes, thistle, speedwell and willow. Seston and nannoplankton had the highest concentration ratios with substantial decreases observed for higher trophic level compartments. Significant (P < 0.01 to P < 0.001) seasonal effects wee found for concentration ratios. Radionuclides without nutrient analogs had the highest ratios in spring for periphyton, macrophytes and littoral plants. Concentration ratios were highest in summer, fall or winter for radionuclides with nutrient analogs

Seasonal dynamics of mosquito occurrence in the Lower Dyje River Basin at the Czech-Slovak-Austrian border

Czech Academy of Sciences Publication Activity Database

Šebesta, Oldřich; Gelbič, Ivan; Peško, Juraj

2013-01-01

Roč. 80, č. 1 (2013), s. 125-138 ISSN 1125-0003 R&D Projects: GA MŠk 2B08003 Institutional research plan: CEZ:AV0Z50070508 Institutional support: RVO:68081766 ; RVO:60077344 Keywords : Czech Republic * South Moravia * Aedes vexans * Culex modestus * seasonal dynamics Subject RIV: EG - Zoology Impact factor: 0.865, year: 2013

Spatial Distribution of Viruses Associated with Planktonic and Attached Microbial Communities in Hydrothermal Environments

Science.gov (United States)

Nunoura, Takuro; Kazama, Hiromi; Noguchi, Takuroh; Inoue, Kazuhiro; Akashi, Hironori; Yamanaka, Toshiro; Toki, Tomohiro; Yamamoto, Masahiro; Furushima, Yasuo; Ueno, Yuichiro; Yamamoto, Hiroyuki; Takai, Ken

2012-01-01

Viruses play important roles in marine surface ecosystems, but little is known about viral ecology and virus-mediated processes in deep-sea hydrothermal microbial communities. In this study, we examined virus-like particle (VLP) abundances in planktonic and attached microbial communities, which occur in physical and chemical gradients in both deep and shallow submarine hydrothermal environments (mixing waters between hydrothermal fluids and ambient seawater and dense microbial communities attached to chimney surface areas or macrofaunal bodies and colonies). We found that viruses were widely distributed in a variety of hydrothermal microbial habitats, with the exception of the interior parts of hydrothermal chimney structures. The VLP abundance and VLP-to-prokaryote ratio (VPR) in the planktonic habitats increased as the ratio of hydrothermal fluid to mixing water increased. On the other hand, the VLP abundance in attached microbial communities was significantly and positively correlated with the whole prokaryotic abundance; however, the VPRs were always much lower than those for the surrounding hydrothermal waters. This is the first report to show VLP abundance in the attached microbial communities of submarine hydrothermal environments, which presented VPR values significantly lower than those in planktonic microbial communities reported before. These results suggested that viral lifestyles (e.g., lysogenic prevalence) and virus interactions with prokaryotes are significantly different among the planktonic and attached microbial communities that are developing in the submarine hydrothermal environments. PMID:22210205

Synchrony, compensatory dynamics, and the functional trait basis of phenological diversity in a tropical dry forest tree community: effects of rainfall seasonality

Science.gov (United States)

Lasky, Jesse R.; Uriarte, María; Muscarella, Robert

2016-11-01

Interspecific variation in phenology is a key axis of functional diversity, potentially mediating how communities respond to climate change. The diverse drivers of phenology act across multiple temporal scales. For example, abiotic constraints favor synchronous reproduction (positive covariance among species), while biotic interactions can favor synchrony or compensatory dynamics (negative covariance). We used wavelet analyses to examine phenology of community flower and seed production for 45 tree species across multiple temporal scales in a tropical dry forest in Puerto Rico with marked rainfall seasonality. We asked three questions: (1) do species exhibit synchronous or compensatory temporal dynamics in reproduction, (2) do interspecific differences in phenology reflect variable responses to rainfall, and (3) is interspecific variation in phenology and response to a major drought associated with functional traits that mediate responses to moisture? Community-level flowering was synchronized at seasonal scales (˜5-6 mo) and at short scales (˜1 mo, following rainfall). However, seed rain exhibited significant compensatory dynamics at intraseasonal scales (˜3 mo), suggesting interspecific variation in temporal niches. Species with large leaves (associated with sensitivity to water deficit) peaked in reproduction synchronously with the peak of seasonal rainfall (˜5 mo scale). By contrast, species with high wood specific gravity (associated with drought resistance) tended to flower in drier periods. Flowering of tall species and those with large leaves was most tightly linked to intraseasonal (˜2 mo scale) rainfall fluctuations. Although the 2015 drought dramatically reduced community-wide reproduction, functional traits were not associated with the magnitude of species-specific declines. Our results suggest opposing drivers of synchronous versus compensatory dynamics at different temporal scales. Phenology associations with functional traits indicated that

Phytoplankton biomass and microbial abundances during the spring upwelling season in the coastal area off Concepción, central-southern Chile: Variability around a time series station

Science.gov (United States)

Morales, Carmen E.; Anabalón, Valeria

2012-01-01

In the coastal system off Concepción, time series observations at a fixed station (St. 18) have shown strong seasonal changes in the oceanographic environment of the upper layer (blooms, dominated by microplanktonic diatoms, have usually overshadowed the relevance of the smaller microbial components during upwelling. This study focuses on the variability of oceanographic conditions and their association with the structure of the planktonic community (size fractionated chlorophyll-a and microbial abundances) in the upper layer during the upwelling season, examining the extent to which St. 18 is representative of the coastal system off Concepción during springtime. For this purpose, data from three consecutive springs (2004, 2005, 2006) were compared, which included cruises for all years (8 stations around St. 18) as well as monthly sampling at St. 18. Most of the spatial (submesoscale) variability in chlorophyll-a and the microbial components was not significant, but data dispersion around mean values was high. Water column structure (temperature and salinity) in the upper layer explained a significant fraction (25-65%) of the spatial variability in most of the planktonic components; their responses to oceanographic variability were linear in some cases and non-linear in others. For the most part, St. 18 appears to adequately represent mean oceanographic conditions and the structure of planktonic communities in the coastal waters off Concepción during springtime, however spatial variability needs to be taken into account in the interpretations of temporal changes at this fixed station as well as in assessments of carbon flow within, and exportation processes from, this upwelling system.

Effects of season on ecological processes in extensive earthen tilapia ponds in Southeastern Brazil.

Science.gov (United States)

Favaro, E G P; Sipaúba-Tavares, L H; Milstein, A

2015-11-01

In Southeastern Brazil tilapia culture is conducted in extensive and semi-intensive flow-through earthen ponds, being water availability and flow management different in the rainy and dry seasons. In this region lettuce wastes are a potential cheap input for tilapia culture. This study examined the ecological processes developing during the rainy and dry seasons in three extensive flow-through earthen tilapia ponds fertilized with lettuce wastes. Water quality, plankton and sediment parameters were sampled monthly during a year. Factor analysis was used to identify the ecological processes occurring within the ponds and to construct a conceptual graphic model of the pond ecosystem functioning during the rainy and dry seasons. Processes related to nitrogen cycling presented differences between both seasons while processes related to phosphorus cycling did not. Ecological differences among ponds were due to effects of wind protection by surrounding vegetation, organic loading entering, tilapia density and its grazing pressure on zooplankton. Differences in tilapia growth among ponds were related to stocking density and ecological process affecting tilapia food availability and intraspecific competition. Lettuce wastes addition into the ponds did not produce negative effects, thus this practice may be considered a disposal option and a low-cost input source for tilapia, at least at the amounts applied in this study.

Unraveling the intricate dynamics of planktonic Arctic marine food webs. A sensitivity analysis of a well-documented food web model

Science.gov (United States)

Saint-Béat, Blanche; Maps, Frédéric; Babin, Marcel

2018-01-01

The extreme and variable environment shapes the functioning of Arctic ecosystems and the life cycles of its species. This delicate balance is now threatened by the unprecedented pace and magnitude of global climate change and anthropogenic pressure. Understanding the long-term consequences of these changes remains an elusive, yet pressing, goal. Our work was specifically aimed at identifying which biological processes impact Arctic planktonic ecosystem functioning, and how. Ecological Network Analysis (ENA) indices reveal emergent ecosystem properties that are not accessible through simple in situ observation. These indices are based on the architecture of carbon flows within food webs. But, despite the recent increase in in situ measurements from Arctic seas, many flow values remain unknown. Linear inverse modeling (LIM) allows missing flow values to be estimated from existing flow observations and, subsequent reconstruction of ecosystem food webs. Through a sensitivity analysis on a LIM model of the Amundsen Gulf in the Canadian Arctic, we were able to determine which processes affected the emergent properties of the planktonic ecosystem. The analysis highlighted the importance of an accurate knowledge of the various processes controlling bacterial production (e.g. bacterial growth efficiency and viral lysis). More importantly, a change in the fate of the microzooplankton within the food web can be monitored through the trophic level of mesozooplankton. It can be used as a "canary in the coal mine" signal, a forewarner of larger ecosystem change.

The effects of the Sea Empress oil spill on the plankton of the Southern Irish Sea

International Nuclear Information System (INIS)

Batten, S.D.; Allen, R.J.S.; Wotton, C.O.M.

1998-01-01

This study investigates the effects of the Sea Empress oil spill on the local plankton communities which are an important component of the marine ecosystem. The Continuous Plankton Recorder survey has monitored the plankton in this area since 1970 giving an extensive time series for comparison with post-spill samples. The analytical procedures applied and results obtained are presented and reveal that, with some exceptions, no significant effects were evident. Barnacle larvae were not recorded post-spill and the spring zooplankton community was somewhat different to the previous year. A long-term trend is apparent in the community but the most common taxa showed no significant changes, suggesting a minor shift in species composition rather than a dramatic change. (author)

Progress in Late Cretaceous planktonic foraminiferal stable isotope paleoecology and implications for paleoceanographic reconstructions

Science.gov (United States)

Petrizzo, Maria Rose; Falzoni, Francesca; Huber, Brian T.; MacLeod, Kenneth G.

2015-04-01

Paleoecological preferences proposed for Cretaceous planktonic foraminiferal taxa have traditionally been based on morphological analogies with depth-stratified modern species, on biofacies comparison in continental margin and deepwater settings, and limited oxygen and carbon stable isotope data. These studies concluded that large-sized, keeled and heavily calcified planktonic foraminifera generally lived at deeper levels in the surface waters than small-sized, thinner-walled non-keeled species. Stable isotope data have been used to infer information on paleotemperature, paleoceanography and paleoproductivity of ancient oceans and constrain biological paleo-activities (i.e. photosymbiosis and respiration) of fossil species. These studies have suggested that the depth-distribution model based on analogy with modern taxa might not be fully applicable for Cretaceous species, and found particularly 13C-enriched values in some Maastrichtian multiserial taxa that have been related to the activity of photosymbionts. We have collected about 1500 δ18O and δ13C species-specific analyses on glassy preserved planktonic foraminifera from Tanzania (Tanzania Drilling Project TDP sites 23, 28 and 32) and well-preserved planktonic foraminifera from other mid-low latitude localities (Shatsky Rise, northwestern Pacific Ocean, ODP Leg 198 Hole 1210B; Exmouth Plateau, eastern Indian Ocean, ODP Leg 122, Hole 762C; Eratosthenes Seamount, eastern Mediterranean, ODP Leg 160, Hole 967E; Blake Nose, central Atlantic Ocean, ODP Leg 171B, holes 1050C and 1052E) to investigate Late Cretaceous species paleoecological preferences, life strategies and depth distribution in the surface water column. Our results indicates that several large-sized (> 500 μm) double-keeled species belonging to the genera Dicarinella, Marginotruncana and Contusotruncana, generally interpreted as deep to thermocline dwellers, instead occupied shallow/warm layers of the water column, whilst not all biserial species

Biological soil crusts exhibit a dynamic response to seasonal rain and release from grazing with implications for soil stability

Science.gov (United States)

Jimenez, Aguilar A.; Huber-Sannwald, E.; Belnap, J.; Smart, D.R.; Arredondo, Moreno J.T.

2009-01-01

In Northern Mexico, long-term grazing has substantially degraded semiarid landscapes. In semiarid systems, ecological and hydrological processes are strongly coupled by patchy plant distribution and biological soil crust (BSC) cover in plant-free interspaces. In this study, we asked: 1) how responsive are BSC cover/composition to a drying/wetting cycle and two-year grazing removal, and 2) what are the implications for soil erosion? We characterized BSC morphotypes and their influence on soil stability under grazed/non-grazed conditions during a dry and wet season. Light- and dark-colored cyanobacteria were dominant at the plant tussock and community level. Cover changes in these two groups differed after a rainy season and in response to grazing removal. Lichens with continuous thalli were more vulnerable to grazing than those with semi-continuous/discontinuous thalli after the dry season. Microsites around tussocks facilitated BSC colonization compared to interspaces. Lichen and cyanobacteria morphotypes differentially enhanced resistance to soil erosion; consequently, surface soil stability depends on the spatial distribution of BSC morphotypes, suggesting soil stability may be as dynamic as changes in the type of BSC cover. Longer-term spatially detailed studies are necessary to elicit spatiotemporal dynamics of BSC communities and their functional role in biotically and abiotically variable environments. ?? 2009 Elsevier Ltd.

Impact of seasonal forcing on reactive ecological systems.

Science.gov (United States)

Vesipa, Riccardo; Ridolfi, Luca

2017-04-21

Our focus is on the short-term dynamics of reactive ecological systems which are stable in the long term. In these systems, perturbations can exhibit significant transient amplifications before asymptotically decaying. This peculiar behavior has attracted increasing attention. However, reactive systems have so far been investigated assuming that external environmental characteristics remain constant, although environmental conditions (e.g., temperature, moisture, water availability, etc.) can undergo substantial changes due to seasonal cycles. In order to fill this gap, we propose applying the adjoint non-modal analysis to study the impact of seasonal variations of environmental conditions on reactive systems. This tool allows the transient dynamics of a perturbation affecting non-autonomous ecological systems to be described. To show the potential of this approach, a seasonally forced prey-predator model with a Holling II type functional response is studied as an exemplifying case. We demonstrate that seasonalities can greatly affect the transient dynamics of the system. Copyright © 2017 Elsevier Ltd. All rights reserved.

Mercury speciation in plankton from the Cabo Frio Bay, SE--Brazil.

Science.gov (United States)

Silva-Filho, Emmanoel V; Kütter, Vinicius T; Figueiredo, Thiago S; Tessier, Emmanuel; Rezende, Carlos E; Teixeira, Daniel C; Silva, Carlos A; Donard, Olivier F X

2014-12-01

Mercury (Hg) is considered a global pollutant, and the scientific community has shown great concern about its toxicity as it may affect the biota of entire systems, through bioaccumulation and bioamplification processes of its organic form, methylmercury (MeHg), along food web. However, few research studies deal with bioaccumulation of Hg from marine primary producers and the first-order consumers. So, this study aims to determine Hg distribution and concentration levels in phytoplankton and zooplankton in the Cabo Frio Bay, Brazil, a site influenced by coastal upwelling. The results from Hg speciation analyses show that inorganic mercury Hg(II) was the predominant specie in plankton from this bay. The annual Hg species distribution in plankton shown mean concentration of 2.00 ± 1.28 ng Hg(II) g(-1) and 0.15 ± 0.08 ng MeHg g(-1) wet weight (phytoplankton) and 2.5 ± 2.03 ng Hg(II) g(-1) and 0.25 ± 0.09 ng MeHg g(-1) wet weight (zooplankton). Therefore, upwelling zones should be considered in the Hg biogeochemical cycle models as a process that enhances Hg(II) bioaccumulation in plankton, raising its bioavailability and shelf deposition.

Seasonal variations in suspended-sediment dynamics in the tidal reach of an estuarine tributary

Science.gov (United States)

Downing-Kunz, Maureen A.; Schoellhamer, David H.

2013-01-01

Quantifying sediment supply from estuarine tributaries is an important component of developing a sediment budget, and common techniques for estimating supply are based on gages located above tidal influence. However, tidal interactions near tributary mouths can affect the magnitude and direction of sediment supply to the open waters of the estuary. We investigated suspended-sediment dynamics in the tidal reach of Corte Madera Creek, an estuarine tributary of San Francisco Bay, using moored acoustic and optical instruments. Flux of both water and suspended-sediment were calculated from observed water velocity and turbidity for two periods in each of wet and dry seasons during 2010. During wet periods, net suspended-sediment flux was seaward; tidally filtered flux was dominated by the advective component. In contrast, during dry periods, net flux was landward; tidally filtered flux was dominated by the dispersive component. The mechanisms generating this landward flux varied; during summer we attributed wind–wave resuspension in the estuary and subsequent transport on flood tides, whereas during autumn we attributed increased spring tide flood velocity magnitude leading to local resuspension. A quadrant analysis similar to that employed in turbulence studies was developed to summarize flux time series by quantifying the relative importance of sediment transport events. These events are categorized by the direction of velocity (flood vs. ebb) and the magnitude of concentration relative to tidally averaged conditions (relatively turbid vs. relatively clear). During wet periods, suspended-sediment flux was greatest in magnitude during relatively turbid ebbs, whereas during dry periods it was greatest in magnitude during relatively turbid floods. A conceptual model was developed to generalize seasonal differences in suspended-sediment dynamics; model application to this study demonstrated the importance of few, relatively large events on net suspended-sediment flux

Global sampling of the seasonal changes in vegetation biophysical properties and associated carbon flux dynamics: using the synergy of information captured by spectral time series

Science.gov (United States)

Campbell, P. K. E.; Huemmrich, K. F.; Middleton, E.; Voorhis, S.; Landis, D.

2016-12-01

Spatial heterogeneity and seasonal dynamics in vegetation function contribute significantly to the uncertainties in regional and global CO2 budgets. High spectral resolution imaging spectroscopy ( 10 nm, 400-2500 nm) provides an efficient tool for synoptic evaluation of the factors significantly affecting the ability of the vegetation to sequester carbon and to reflect radiation, due to changes in vegetation chemical and structural composition. EO-1 Hyperion has collected more than 15 years of repeated observations for vegetation studies, and currently Hyperion time series are available for study of vegetation carbon dynamics at a number of FLUX sites. This study presents results from the analysis of EO-1 Hyperion and FLUX seasonal composites for a range of ecosystems across the globe. Spectral differences and seasonal trends were evaluated for each vegetation type and specific phenology. Evaluating the relationships between CO2 flux parameters (e.g., Net ecosystem production - NEP; Gross Ecosystem Exchange - GEE, CO2 flux, μmol m-2 s-1) and spectral parameters for these very different ecosystems, high correlations were established to parameters associated with canopy water and chlorophyll content for deciduous, and photosynthetic function for conifers. Imaging spectrometry provided high spatial resolution maps of CO2 fluxes absorbed by vegetation, and was efficient in tracing seasonal flux dynamics. This study will present examples for key ecosystem tipes to demonstrate the ability of imaging spectrometry and EO-1 Hyperion to map and compare CO2 flux dynamics across the globe.

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea.

Science.gov (United States)

Parsons, Rachel J; Breitbart, Mya; Lomas, Michael W; Carlson, Craig A

2012-02-01

There are an estimated 10(30) virioplankton in the world oceans, the majority of which are phages (viruses that infect bacteria). Marine phages encompass enormous genetic diversity, affect biogeochemical cycling of elements, and partially control aspects of prokaryotic production and diversity. Despite their importance, there is a paucity of data describing virioplankton distributions over time and depth in oceanic systems. A decade of high-resolution time-series data collected from the upper 300 m in the northwestern Sargasso Sea revealed recurring temporal and vertical patterns of virioplankton abundance in unprecedented detail. An annual virioplankton maximum developed between 60 and 100 m during periods of summer stratification and eroded during winter convective mixing. The timing and vertical positioning of this seasonal pattern was related to variability in water column stability and the dynamics of specific picophytoplankton and heterotrophic bacterioplankton lineages. Between 60 and 100 m, virioplankton abundance was negatively correlated to the dominant heterotrophic bacterioplankton lineage SAR11, as well as the less abundant picophytoplankton, Synechococcus. In contrast, virioplankton abundance was positively correlated to the dominant picophytoplankton lineage Prochlorococcus, and the less abundant alpha-proteobacteria, Rhodobacteraceae. Seasonally, virioplankton abundances were highly synchronous with Prochlorococcus distributions and the virioplankton to Prochlorococcus ratio remained remarkably constant during periods of water column stratification. The data suggest that a significant fraction of viruses in the mid-euphotic zone of the subtropical gyres may be cyanophages and patterns in their abundance are largely determined by Prochlorococcus dynamics in response to water column stability. This high-resolution, decadal survey of virioplankton abundance provides insight into the possible controls of virioplankton dynamics in the open ocean.

Seasonal Synchronization of a Simple Stochastic Dynamical Model Capturing El Niño Diversity

Science.gov (United States)

Thual, S.; Majda, A.; Chen, N.

2017-12-01

The El Niño-Southern Oscillation (ENSO) has significant impact on global climate and seasonal prediction. Recently, a simple ENSO model was developed that automatically captures the ENSO diversity and intermittency in nature, where state-dependent stochastic wind bursts and nonlinear advection of sea surface temperature (SST) are coupled to simple ocean-atmosphere processes that are otherwise deterministic, linear and stable. In the present article, it is further shown that the model can reproduce qualitatively the ENSO synchronization (or phase-locking) to the seasonal cycle in nature. This goal is achieved by incorporating a cloud radiative feedback that is derived naturally from the model's atmosphere dynamics with no ad-hoc assumptions and accounts in simple fashion for the marked seasonal variations of convective activity and cloud cover in the eastern Pacific. In particular, the weak convective response to SSTs in boreal fall favors the eastern Pacific warming that triggers El Niño events while the increased convective activity and cloud cover during the following spring contributes to the shutdown of those events by blocking incoming shortwave solar radiations. In addition to simulating the ENSO diversity with realistic non-Gaussian statistics in different Niño regions, both the eastern Pacific moderate and super El Niño, the central Pacific El Niño as well as La Niña show a realistic chronology with a tendency to peak in boreal winter as well as decreased predictability in spring consistent with the persistence barrier in nature. The incorporation of other possible seasonal feedbacks in the model is also documented for completeness.

Pre-monsoon living planktonic foraminifera from the Southeastern Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Guptha, M.V.S.; Naidu, P.D.; Muralinath, A.S.

LOGICAL SoCIETY OF INDIA Vol. 36, Dec. 1990, pp. 654 to 660 Pre-Monsoon Living Planktonic Foraminifera from the Southeastern Arabian Sea M. V. S. GUPTHA.. P. DIVAKAR NAlDU AND A. S. MURALINATH Nalional Institute of Oceanography, Dona Paula, Goa 403004...

Ether lipids of planktonic archae in the marine water column

NARCIS (Netherlands)

Sinninghe Damsté, J.S.; Hoefs, M.J.L.; Schouten, S.; King, L.L.; Wakeham, S.G.; Leeuw, J.W. de

1997-01-01

Acyclic and cyclic biphytanes derived from the membrane ether lipids of archaea were found in water column particulate and sedimentary organic matter from several oxic and anoxic marine environments. Compound-specific isotope analyses of the carbon skeletons suggest that planktonic archaea utilize

Holocene planktonic foraminifera from the shelf sediments off Kerala Coast

Digital Repository Service at National Institute of Oceanography (India)

Setty, M.G.A.P.

Twenty-two planktonic foraminifers were identified from a few samples collected aboard INS KISTNA at 9~'N and 76~'E, at 89 metres depth from the bottom sediment-water interface. A few of the more characteristic features of each are described. Some...

The Continuous Plankton Imaging and Classification Sensor (CPICS): A Sensor for Quantifying Mesoplankton Biodiversity and Community Structure

Science.gov (United States)

Gallager, S. M.

2016-02-01

Marine ecosystems are changing at a variety of time scales as a function of a diverse suite of forcing functions both natural and anthropogenic. Establishing a continuous plankton time series consisting of scales from rapid (seconds) to long-term (decades), provides a sentinel for ecosystem change. The key is to measure plankton biodiversity at sufficiently fast time scales that allow disentanglement of physical (transport) and biological (growth) properties of an ecosystem. CPICS is a plankton and particle imaging microscope system that is designed to produce crisp darkfield images of light scattering material in aquatic environments. The open flow design is non-invasive and non-restrictive providing images of very fragile plankton in their natural orientation. Several magnifications are possible from 0.5 to 5x forming a field of view of 10cm to 1mm, respectively. CPICS has been installed on several cabled observing systems called OceanCubes off the coast of Okinawa and Tokyo, Japan providing a continuous stream of plankton images to a machine vision image classifier located at WHOI. Image features include custom algorithms for texture, color pattern, morphology and shape, which are extracted from in-focus target. The features are then used to train a classifier (e.g., Random Forest) resulting in classifications that are tested using cross-validation, confusion matrices and ROC curves. High (>90%) classification accuracies are possible depending on the number of training categories and target complexity. A web-based utility allows access to raw images, training sets, classifiers and classification results. Combined with chemical and physical data from the observatories, an ecologically meaningful plankton index of biodiversity and its variance is developed using a combination of species and taxon groups, which provides an approach for understanding ecosystem change without the need to identify all targets to species. http://oceancubes.whoi.edu/instruments/CPICS

A 60-year ocean colour data set from the continuous plankton recorder

KAUST Repository

Raitsos, Dionysios E.

2012-11-20

The phytoplankton colour index (PCI) of the Continuous Plankton Recorder (CPR) survey is an in situ measure of ocean colour, which is considered a proxy of the phytoplankton biomass. PCI has been extensively used to describe the major spatiotemporal patterns of phytoplankton in the North Atlantic Ocean and North Sea since 1931. Regardless of its wide application, the lack of an adequate evaluation to test the PCI\\'s quantitative nature is an important limitation. To address this concern, a field trial over the main production season has been undertaken to assess the numerical values assigned by previous investigations for each category of the greenness of the PCI. CPRs were towed across the English Channel from Roscoff to Plymouth consecutively for each of 8 months producing 76 standard CPR samples, each representing 10 nautical miles of tow. The results of this experiment test and update the PCI methodology, and confirm the validity of this long-term in situ ocean colour data set. In addition, using a 60-year time series of the PCI of the western English Channel, a comparison is made between the previous and the current revised experimental calculations of PCI. © 2012 The Author 2012. Published by Oxford University Press. All rights reserved.

A 60-year ocean colour data set from the continuous plankton recorder

KAUST Repository

Raitsos, Dionysios E.; Walne, Anthony W.; Lavender, Sam; Licandro, Priscilla; Reid, Philip Chris; Edwards, Martin

2012-01-01

The phytoplankton colour index (PCI) of the Continuous Plankton Recorder (CPR) survey is an in situ measure of ocean colour, which is considered a proxy of the phytoplankton biomass. PCI has been extensively used to describe the major spatiotemporal patterns of phytoplankton in the North Atlantic Ocean and North Sea since 1931. Regardless of its wide application, the lack of an adequate evaluation to test the PCI's quantitative nature is an important limitation. To address this concern, a field trial over the main production season has been undertaken to assess the numerical values assigned by previous investigations for each category of the greenness of the PCI. CPRs were towed across the English Channel from Roscoff to Plymouth consecutively for each of 8 months producing 76 standard CPR samples, each representing 10 nautical miles of tow. The results of this experiment test and update the PCI methodology, and confirm the validity of this long-term in situ ocean colour data set. In addition, using a 60-year time series of the PCI of the western English Channel, a comparison is made between the previous and the current revised experimental calculations of PCI. © 2012 The Author 2012. Published by Oxford University Press. All rights reserved.

Seasonal variations in larval biomass and biochemical composition of brown shrimp, Crangon crangon (Decapoda, Caridea), at hatching

Science.gov (United States)

Urzúa, Ángel; Anger, Klaus

2013-06-01

The "brown shrimp", Crangon crangon (Linnaeus 1758), is a benthic key species in the North Sea ecosystem, supporting an intense commercial fishery. Its reproductive pattern is characterized by a continuous spawning season from mid-winter to early autumn. During this extended period, C. crangon shows significant seasonal variations in egg size and embryonic biomass, which may influence larval quality at hatching. In the present study, we quantified seasonal changes in dry weight (W) and chemical composition (CHN, protein and lipid) of newly hatched larvae of C. crangon. Our data revealed significant variations, with maximum biomass values at the beginning of the hatching season (February-March), a decrease throughout spring (April-May) and a minimum in summer (June-September). While all absolute values of biomass and biochemical constituents per larva showed highly significant differences between months ( P larvae" hatching from larger "winter eggs" showed higher initial values of biomass compared to "summer larvae" originating from smaller "summer eggs". This indicates carry-over effects persisting from the embryonic to the larval phase. Since "winter larvae" are more likely exposed to poor nutritional conditions, intraspecific variability in larval biomass at hatching is interpreted as part of an adaptive reproductive strategy compensating for strong seasonality in plankton production and transitory periods of larval food limitation.

Quantifying the influence of CO2 seasonality on future aragonite undersaturation onset

Science.gov (United States)

Sasse, T. P.; McNeil, B. I.; Matear, R. J.; Lenton, A.

2015-10-01

Ocean acidification is a predictable consequence of rising atmospheric carbon dioxide (CO2), and is highly likely to impact the entire marine ecosystem - from plankton at the base of the food chain to fish at the top. Factors which are expected to be impacted include reproductive health, organism growth and species composition and distribution. Predicting when critical threshold values will be reached is crucial for projecting the future health of marine ecosystems and for marine resources planning and management. The impacts of ocean acidification will be first felt at the seasonal scale, however our understanding how seasonal variability will influence rates of future ocean acidification remains poorly constrained due to current model and data limitations. To address this issue, we first quantified the seasonal cycle of aragonite saturation state utilizing new data-based estimates of global ocean-surface dissolved inorganic carbon and alkalinity. This seasonality was then combined with earth system model projections under different emissions scenarios (representative concentration pathways; RCPs 2.6, 4.5 and 8.5) to provide new insights into future aragonite undersaturation onset. Under a high emissions scenario (RCP 8.5), our results suggest accounting for seasonality will bring forward the initial onset of month-long undersaturation by 17 ± 10 years compared to annual-mean estimates, with differences extending up to 35 ± 16 years in the North Pacific due to strong regional seasonality. This earlier onset will result in large-scale undersaturation once atmospheric CO2 reaches 496 ppm in the North Pacific and 511 ppm in the Southern Ocean, independent of emission scenario. This work suggests accounting for seasonality is critical to projecting the future impacts of ocean acidification on the marine environment.

Evaluation of surface water dynamics for water-food security in seasonal wetlands, north-central Namibia

Directory of Open Access Journals (Sweden)

T. Hiyama

2014-09-01

Full Text Available Agricultural use of wetlands is important for food security in various regions. However, land-use changes in wetland areas could alter the water cycle and the ecosystem. To conserve the water environments of wetlands, care is needed when introducing new cropping systems. This study is the first attempt to evaluate the water dynamics in the case of the introduction of rice-millet mixed-cropping systems to the Cuvelai system seasonal wetlands (CSSWs in north-central Namibia. We first investigated seasonal changes in surface water coverage by using satellite remote sensing data. We also assessed the effect of the introduction of rice-millet mixed-cropping systems on evapotranspiration in the CSSWs region. For the former investigation, we used MODIS and AMSR-E satellite remote sensing data. These data showed that at the beginning of the wet season, surface water appears from the southern (lower part and then expands to the northern (higher part of the CSSWs. For the latter investigation, we used data obtained by the classical Bowen ratio-energy balance (BREB method at an experimental field site established in September 2012 on the Ogongo campus, University of Namibia. This analysis showed the importance of water and vegetation conditions when introducing mixed-cropping to the region.

Calibration and combination of dynamical seasonal forecasts to enhance the value of predicted probabilities for managing risk

Science.gov (United States)

Dutton, John A.; James, Richard P.; Ross, Jeremy D.

2013-06-01

Seasonal probability forecasts produced with numerical dynamics on supercomputers offer great potential value in managing risk and opportunity created by seasonal variability. The skill and reliability of contemporary forecast systems can be increased by calibration methods that use the historical performance of the forecast system to improve the ongoing real-time forecasts. Two calibration methods are applied to seasonal surface temperature forecasts of the US National Weather Service, the European Centre for Medium Range Weather Forecasts, and to a World Climate Service multi-model ensemble created by combining those two forecasts with Bayesian methods. As expected, the multi-model is somewhat more skillful and more reliable than the original models taken alone. The potential value of the multimodel in decision making is illustrated with the profits achieved in simulated trading of a weather derivative. In addition to examining the seasonal models, the article demonstrates that calibrated probability forecasts of weekly average temperatures for leads of 2-4 weeks are also skillful and reliable. The conversion of ensemble forecasts into probability distributions of impact variables is illustrated with degree days derived from the temperature forecasts. Some issues related to loss of stationarity owing to long-term warming are considered. The main conclusion of the article is that properly calibrated probabilistic forecasts possess sufficient skill and reliability to contribute to effective decisions in government and business activities that are sensitive to intraseasonal and seasonal climate variability.

Comparative study of potential transfer of natural and anthropogenic cadmium to plankton communities in the North-West African upwelling

Energy Technology Data Exchange (ETDEWEB)

Auger, P.A., E-mail: pierreamael.auger@gmail.com [Laboratoire de Physique des Océans (LPO), UMR-CNRS 6523/IFREMER/IRD/UBO, BP70, 29280 Plouzané (France); Machu, E.; Gorgues, T.; Grima, N. [Laboratoire de Physique des Océans (LPO), UMR-CNRS 6523/IFREMER/IRD/UBO, BP70, 29280 Plouzané (France); Waeles, M. [Université de Bretagne Occidentale (UBO), Laboratoire de l' Environnement Marin (LEMAR), UMR-CNRS 6539/IRD/UBO, place N. Copernic, 29280 Plouzané (France)

2015-02-01

A Lagrangian approach based on a physical–biogeochemical modeling was used to compare the potential transfer of cadmium (Cd) from natural and anthropogenic sources to plankton communities (Cd-uptake) in the North-West African upwelling. In this region, coastal upwelling was estimated to be the main natural source of Cd while the most significant anthropogenic source for marine ecosystem is provided by phosphate industry. In our model experiment, Cd-uptake (natural or anthropogenic) in the North-West African upwelling is the result of an interplay between the Cd dispersion (by advection processes) and the simulated biological productivity. In the Moroccan waters, advection processes limit the residence time of water masses resulting in a low natural Cd-uptake by plankton communities while anthropogenic Cd-uptake is high. As expected, the situation is reversed in the Senegalo-Mauritanian upwelling where natural Cd-uptake is higher than anthropogenic Cd-uptake. Based upon an estimate of Cd sources, our modeling study shows, unexpectedly, that the anthropogenic signal of potential Cd-bioaccumulation in the Moroccan upwelling is of the same order of magnitude as the natural signal mainly present in the Senegalo-Mauritanian upwelling region. A comparison with observed Cd levels in mollusk and fishes, which shows overall agreement with our simulations, is confirming our estimates. - Highlights: • We model the physical–biogeochemical dynamics in the North-West African upwelling. • We model the transport of cadmium from natural and anthropogenic sources. • We derive proxies of potential cadmium absorption and bioaccumulation in the plankton food chain. • The anthropogenic signal off Morocco at least equals the natural upwelling signal off Mauritania. • We compare our results with observed cadmium levels in mollusks and fishes.

Comparative study of potential transfer of natural and anthropogenic cadmium to plankton communities in the North-West African upwelling

International Nuclear Information System (INIS)

Auger, P.A.; Machu, E.; Gorgues, T.; Grima, N.; Waeles, M.

2015-01-01

A Lagrangian approach based on a physical–biogeochemical modeling was used to compare the potential transfer of cadmium (Cd) from natural and anthropogenic sources to plankton communities (Cd-uptake) in the North-West African upwelling. In this region, coastal upwelling was estimated to be the main natural source of Cd while the most significant anthropogenic source for marine ecosystem is provided by phosphate industry. In our model experiment, Cd-uptake (natural or anthropogenic) in the North-West African upwelling is the result of an interplay between the Cd dispersion (by advection processes) and the simulated biological productivity. In the Moroccan waters, advection processes limit the residence time of water masses resulting in a low natural Cd-uptake by plankton communities while anthropogenic Cd-uptake is high. As expected, the situation is reversed in the Senegalo-Mauritanian upwelling where natural Cd-uptake is higher than anthropogenic Cd-uptake. Based upon an estimate of Cd sources, our modeling study shows, unexpectedly, that the anthropogenic signal of potential Cd-bioaccumulation in the Moroccan upwelling is of the same order of magnitude as the natural signal mainly present in the Senegalo-Mauritanian upwelling region. A comparison with observed Cd levels in mollusk and fishes, which shows overall agreement with our simulations, is confirming our estimates. - Highlights: • We model the physical–biogeochemical dynamics in the North-West African upwelling. • We model the transport of cadmium from natural and anthropogenic sources. • We derive proxies of potential cadmium absorption and bioaccumulation in the plankton food chain. • The anthropogenic signal off Morocco at least equals the natural upwelling signal off Mauritania. • We compare our results with observed cadmium levels in mollusks and fishes

Dynamics of size-fractionated phytoplankton biomass in a monsoonal estuary: Patterns and drivers for seasonal and spatial variability

Science.gov (United States)

Rajaneesh, K. M.; Mitbavkar, Smita; Anil, Arga Chandrashekar

2018-07-01

Phytoplankton size-fractionated biomass is an important determinant of the type of food web functioning in aquatic ecosystems. Knowledge about the effect of seasonal salinity gradient on the size-fractionated biomass dynamics is still lacking, especially in tropical estuaries experiencing monsoon. The phytoplankton size-fractionated chlorophyll a biomass (>3 μm and 3 μm size-fraction was the major contributor to the total phytoplankton chlorophyll a biomass with the ephemeral dominance of biomass concentration of both size-fractions showed signs of recovery with increasing salinity downstream towards the end of the monsoon season. In contrast, the chlorophyll a biomass response was size-dependent during the non-monsoon seasons with the sporadic dominance (>50%) of biomass during high water temperature episodes from downstream to middle estuary during pre-monsoon and at low salinity and high nutrient conditions upstream during post-monsoon. These conditions also influenced the picophytoplankton community structure with picoeukaryotes dominating during the pre-monsoon, phycoerythrin containing Synechococcus during the monsoon and phycocyanin containing Synechococcus during the post-monsoon. This study highlights switching over of dominance in size-fractionated phytoplankton chlorophyll a biomass at intra, inter-seasonal and spatial scales which will likely govern the estuarine trophodynamics.

Seasonal dynamics of Proteocephalus sagittus in the stone loach Barbatula barbatula from the Haná River, Czech Republic

Czech Academy of Sciences Publication Activity Database

Jarkovský, J.; Koubková, B.; Scholz, Tomáš; Prokeš, Miroslav; Baruš, Vlastimil

2004-01-01

Roč. 78, č. 3 (2004), s. 225-229 ISSN 0022-149X R&D Projects: GA ČR GA524/01/1314; GA AV ČR IAA6093104 Institutional research plan: CEZ:AV0Z6022909; CEZ:AV0Z6093917 Keywords : Cestoda * Proteocephalus sagittus * seasonal dynamics Subject RIV: EH - Ecology, Behaviour Impact factor: 0.676, year: 2004

An Experimental-Numerical Study of Small Scale Flow Interaction with Bioluminescent Plankton

National Research Council Canada - National Science Library

Latz, Michael

1998-01-01

Numerical and experimental approaches were used to investigate the effects of quantified flow stimuli on bioluminescence sUmulatidn at the small length and time scales appropriate for individual plankton...

Psd1 Effects on Candida albicans Planktonic Cells and Biofilms

Directory of Open Access Journals (Sweden)

Sónia Gonçalves

2017-06-01

Full Text Available Candida albicans is an important human pathogen, causing opportunistic infections. The adhesion of planktonic cells to a substrate is the first step for biofilm development. The antimicrobial peptide (AMP Psd1 is a defensin isolated from Pisum sativum seeds. We tested the effects of this AMP on C. albicans biofilms and planktonic cells, comparing its activity with amphotericin B and fluconazole. Three C. albicans variants were studied, one of them a mutant deficient in glucosylceramide synthase, conferring resistance to Psd1 antifungal action. Atomic force microscopy (AFM was used to assess morphological and biomechanical changes on fungal cells. Surface alterations, with membrane disruption and leakage of cellular contents, were observed. Cytometry assays and confocal microscopy imaging showed that Psd1 causes cell death, in a time and concentration-dependent manner. These results demonstrate Psd1 pleiotropic action against a relevant fungal human pathogen, suggesting its use as natural antimycotic agent.

Seasonal climate manipulations have only minor effects on litter decomposition rates and N dynamics but strong effects on litter P dynamics of sub-arctic bog species.

Science.gov (United States)

Aerts, R; Callaghan, T V; Dorrepaal, E; van Logtestijn, R S P; Cornelissen, J H C

2012-11-01

Litter decomposition and nutrient mineralization in high-latitude peatlands are constrained by low temperatures. So far, little is known about the effects of seasonal components of climate change (higher spring and summer temperatures, more snow which leads to higher winter soil temperatures) on these processes. In a 4-year field experiment, we manipulated these seasonal components in a sub-arctic bog and studied the effects on the decomposition and N and P dynamics of leaf litter of Calamagrostis lapponica, Betula nana, and Rubus chamaemorus, incubated both in a common ambient environment and in the treatment plots. Mass loss in the controls increased in the order Calamagrostis Litter chemistry showed within each incubation environment only a few and species-specific responses. Compared to the interspecific differences, they resulted in only moderate climate treatment effects on mass loss and these differed among seasons and species. Neither N nor P mineralization in the litter were affected by the incubation environment. Remarkably, for all species, no net N mineralization had occurred in any of the treatments during 4 years. Species differed in P-release patterns, and summer warming strongly stimulated P release for all species. Thus, moderate changes in summer temperatures and/or winter snow addition have limited effects on litter decomposition rates and N dynamics, but summer warming does stimulate litter P release. As a result, N-limitation of plant growth in this sub-arctic bog may be sustained or even further promoted.

Seasonal growth dynamics of the seagrass Zostera caulescens on the eastern coast of Korea

Science.gov (United States)

Kim, Jong-Hyeob; Park, Sang Hoon; Kim, Young Kyun; Kim, Seung Hyeon; Park, Jung-Im; Lee, Kun-Seop

2014-12-01

Zostera caulescens is an endemic seagrass species in Northeastern Asia. Estimated distributional area of this species is approximately 1-5 km2 on the coasts of Korea. Because Z. caulescens has a very limited distribution, the growth dynamics of Z. caulescens is little known in the coastal waters of Korea. In the present study, we investigated the growth dynamics of Z. caulescens in relation to coincident measurements of environmental factors, such as underwater irradiance, water temperature, and nutrient availability. The study was conducted on a monotypic meadow of Z. caulescens in Uljin on the eastern coast of Korea from September 2011 to September 2012. Shoot density and biomass of Z. caulescens showed distinct seasonal variations, and exhibited strong correlations with water temperature suggesting that the seasonal growth of this species was regulated by water temperature. Shoot density and biomass rapidly decreased during the high water temperature period in summer, and thus Z. caulescens is considered a cold water adapted species like other temperate seagrass species on coasts of Korea. Biomass of photosynthetic leaf tissues on reproductive shoots was approximately 4 times higher than that on vegetative shoots. The height of reproductive shoots ranged from 1.2 m in February 2012 to 3.2 m in August 2012, whereas the height of vegetative shoots was usually less than 1.0 m. Leaf tissues on reproductive shoots probably received much more light for photosynthesis than those on vegetative shoots. Thus, reproductive shoots may play an important role in total production of Z. caulescens.

Design and calibration of a new optical plankton counter capable of sizing small zooplankton

Science.gov (United States)

Herman, Alex W.

1992-04-01

A new design of optical plankton counter (OPC) capable of sizing zooplankton in the size range of 256μ to 2 cm is presented. The detection sensitivity is the result of new optical design of the previous system ( HERMAN, 1988, Continental Shelf Research, 8, 205-221) that originally had a lower detection limit of 550 μm. Both theoretical and experimental calibrations for the OPC are derived and compared. Preserved copepods and eggs introduced in a flow tank demonstrate the response of the OPC and its capability for detecting plankton to a limit of 250 μm. Copepod profiles measured by the OPC mounted on plankton net samplers provided intercomparisons that showed good agreement in identifying copepod layers and identifying some species, for example, copepods as small as Calanus finmarchicus II and up to the adult stages. Profiles containing marine snow and Ceratium illustrate some of the limitations of the OPC in directly measuring and identifying copepods. An additional modification to the OPC may result in a potential lower limit detection of 120 μm, and the practicality of such applications are discussed.

Quantification and localization of trace metals in natural plankton using a synchrotron x-ray fluorescence microprobe

International Nuclear Information System (INIS)

Twining, B. S.; Baines, S. B.; Fisher, N. S.; Jacobsen, C.; Maser, J.; State Univ. of New York at Stony Brook

2003-01-01

The accumulation of trace metals by planktonic protists influences the growth of primary producers, metal biogeochemical cycling, and metal bioaccumulation in aquatic food chains. Despite their importance, unequivocal measurements of trace element concentrations in individual plankton cells have not been possible to date. We have used the 2-ID-E side-branch hard x-ray microprobe at the Advanced Photon Source to measure trace elements in individual marine plankton cells. This microprobe employs zoneplate optics to produce the sub-micron spatial resolution and low background fluorescence required to produce trace element maps of planktonic protist cells ranging in size from 3 to >50 (micro)m. We have developed preservation, rinsing, and mounting protocols that remove most of the salt from our marine samples, thus simplifying the identification of unknown cells and reducing high Cl-related background fluorescence. We have also developed spectral modeling techniques that account for the frequent overlap of adjacent fluorescence peaks and non-uniform detector response. Finally, we have used parallel soft x-ray transmission and epifluorescence microscopy images to estimate C normalized trace element concentrations, identify functional cell types (e.g., photosynthetic vs. non-photosynthetic), and correlate cell structures with spatial patterns in trace element fluorescence

Effects of thermal vapor diffusion on seasonal dynamics of water in the unsaturated zone

Science.gov (United States)

Milly, Paul C.D.

1996-01-01

The response of water in the unsaturated zone to seasonal changes of temperature (T) is determined analytically using the theory of nonisothermal water transport in porous media, and the solutions are tested against field observations of moisture potential and bomb fallout isotopic (36Cl and 3H) concentrations. Seasonally varying land surface temperatures and the resulting subsurface temperature gradients induce thermal vapor diffusion. The annual mean vertical temperature gradient is close to zero; however, the annual mean thermal vapor flux is downward, because the temperature‐dependent vapor diffusion coefficient is larger, on average, during downward diffusion (occurring at high T) than during upward diffusion (low T). The annual mean thermal vapor flux is shown to decay exponentially with depth; the depth (about 1 m) at which it decays to e−1of its surface value is one half of the corresponding decay depth for the amplitude of seasonal temperature changes. This depth‐dependent annual mean flux is effectively a source of water, which must be balanced by a flux divergence associated with other transport processes. In a relatively humid environment the liquid fluxes greatly exceed the thermal vapor fluxes, so such a balance is readily achieved without measurable effect on the dynamics of water in the unsaturated zone. However, if the mean vertical water flux through the unsaturated zone is very small (theoretical prediction is supported by long‐term field measurements in the Chihuahuan Desert. The analysis also makes predictions, confirmed by the field observations, regarding the seasonal variations of matric potential at a given depth. The conceptual model of unsaturated zone water transport developed here implies the possibility of near‐surface trapping of any aqueous constituent introduced at the surface.

Continuous daylight in the high-Arctic summer supports high plankton respiration rates compared to those supported in the dark

KAUST Repository

Mesa, Elena

2017-04-21

Plankton respiration rate is a major component of global CO2 production and is forecasted to increase rapidly in the Arctic with warming. Yet, existing assessments in the Arctic evaluated plankton respiration in the dark. Evidence that plankton respiration may be stimulated in the light is particularly relevant for the high Arctic where plankton communities experience continuous daylight in spring and summer. Here we demonstrate that plankton community respiration evaluated under the continuous daylight conditions present in situ, tends to be higher than that evaluated in the dark. The ratio between community respiration measured in the light (Rlight) and in the dark (Rdark) increased as the 2/3 power of Rlight so that the Rlight:Rdark ratio increased from an average value of 1.37 at the median Rlight measured here (3.62 µmol O2 L-1 d-1) to an average value of 17.56 at the highest Rlight measured here (15.8 µmol O2 L-1 d-1). The role of respiratory processes as a source of CO2 in the Arctic has, therefore, been underestimated and is far more important than previously believed, particularly in the late spring, with 24 h photoperiods, when community respiration rates are highest.

Forward Modeling of Carbonate Proxy Data from Planktonic Foraminifera using Oxygen Isotope Tracers in a Global Ocean Model

Science.gov (United States)

Schmidt, Gavin A.

1999-01-01

The distribution and variation of oxygen isotopes in seawater are calculated using the Goddard Institute for Space Studies global ocean model. Simple ecological models are used to estimate the planktonic foraminiferal abundance as a function of depth, column temperature, season, light intensity, and density stratification. These models are combined to forward model isotopic signals recorded in calcareous ocean sediment. The sensitivity of the results to the changes in foraminiferal ecology, secondary calcification, and dissolution are also examined. Simulated present-day isotopic values for ecology relevant for multiple species compare well with core-top data. Hindcasts of sea surface temperature and salinity are made from time series of the modeled carbonate isotope values as the model climate changes. Paleoclimatic inferences from these carbonate isotope records are strongly affected by erroneous assumptions concerning the covariations of temperature, salinity, and delta (sup 18)O(sub w). Habitat-imposed biases are less important, although errors due to temperature-dependent abundances can be significant.

Agricultural crops and soil treatment impacts on the daily and seasonal dynamics of CO2 fluxes in the field agroecosystems at the Central region of Russia

Science.gov (United States)

Mazirov, Ilya; Vasenev, Ivan; Meshalkina, Joulia; Yaroslavtsev, Alexis; Berezovskiy, Egor; Djancharov, Turmusbek

2015-04-01

The problem of greenhouse gases' concentrations increasing becomes more and more important due to global changes issues. The main component of greenhouse gases is carbon dioxide. The researches focused on its fluxes in natural and anthropogenic modified landscapes can help in this problem solution. Our research has been done with support of the RF Government grants # 11.G34.31.0079 and # 14.120.14.4266 and of FP7 Grant # 603542 LUC4C in the representative for Central Region of Russia field agroecosystems at the Precision Farming Experimental Field of Russian Timiryazev State Agrarian University with cultivated sod podzoluvisols, barley and oats - vetch grass mix (Moscow station of the RusFluxNet). The daily and seasonal dynamics of the carbon dioxide have been studied at the ecosystem level by the Eddy covariance method (2 stations) and at the soil level by the exposition chamber method (40 chambers) with mobile infra red gas analyzer (Li-Cor 820). The primary Eddy covariance monitoring data on CO2 fluxes and water vapor have been processed by EddyPro software developed by LI-COR Biosciences. According to the two-year monitoring data the daily CO2 sink during the vegetation season is usually approximately two times higher than its emission at night. Seasonal CO2 fluxes comparative stabilization has been fixed in case the plants height around 10-12 cm and it usually persist until the wax ripeness phase. There is strong dependence between the soil CO2 emission and the air temperature with the correlation coefficient 0.86 in average (due to strong input of the soil thin top functional subhorizon), but it drops essentially at the end of the season - till 0.38. The soil moisture impact on CO2 fluxes dynamics was less, with negative correlation at the end of the season. High daily dynamics of CO2 fluxes determines the protocol requirements for seasonal soil monitoring investigation with less limitation at the end of the season. The accumulated monitoring data will be

Temperature, salinity, transmissivity, pressure, plankton, oxygen, nutrients, chlorophyll, and primary productivity data collected using CTD, bottle, and plankton net from the R/V Italica in the Ross Sea and Magellan Strait during 10th Italian Antarctic Expedition from 1994-11-13 to 1995-04-02 (NCEI Accession 0068289)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature, salinity, transmissivity, pressure, plankton, oxygen, nutrients, chlorophyll, and primary productivity data collected using CTD, bottle, and plankton...

Een methode ter bepaling van de respiratieaktiviteit in marien plankton

NARCIS (Netherlands)

Lambeck, R.H.D.

1973-01-01

The usefulness of a method, described by T.T. Packard (1971), for the determination of the potential respiratory rate in marine plankton, based on the use of tetrazolium dye, was tested. Especially the influence of a few aspects of the homogenisation procedure on the final results was investigated.

Response of planktonic bacteria of New Calabar River to zinc stress ...

African Journals Online (AJOL)

Response of planktonic bacteria of New Calabar River to zinc stress. ... The result of the in vitro study indicated that the bacterial strains are sensitive to Zn2+ stress. Therefore, Zn2+ contamination would ... Featuring journals from 32 Countries:.

Lack of congruence in species diversity indices and community structures of planktonic groups based on local environmental factors.

Science.gov (United States)

Doi, Hideyuki; Chang, Kwang-Hyeon; Nishibe, Yuichiro; Imai, Hiroyuki; Nakano, Shin-ichi

2013-01-01

The importance of analyzing the determinants of biodiversity and community composition by using multiple trophic levels is well recognized; however, relevant data are lacking. In the present study, we investigated variations in species diversity indices and community structures of the plankton taxonomic groups-zooplankton, rotifers, ciliates, and phytoplankton-under a range of local environmental factors in pond ecosystems. For each planktonic group, we estimated the species diversity index by using linear models and analyzed the community structure by using canonical correspondence analysis. We showed that the species diversity indices and community structures varied among the planktonic groups and according to local environmental factors. The observed lack of congruence among the planktonic groups may have been caused by niche competition between groups with similar trophic guilds or by weak trophic interactions. Our findings highlight the difficulty of predicting total biodiversity within a system, based upon a single taxonomic group. Thus, to conserve the biodiversity of an ecosystem, it is crucial to consider variations in species diversity indices and community structures of different taxonomic groups, under a range of local conditions.

Long-Term Trends and Temporal Synchrony in Plankton Richness, Diversity and Biomass Driven by Re-Oligotrophication and Climate across 17 Danish Lakes

Directory of Open Access Journals (Sweden)

Korhan Özkan

2016-09-01

Full Text Available A two-decade (1989–2008 time series of lake phyto- and zooplankton, water characteristics and climate in 17 Danish lakes was analysed to examine the long term changes and the effects of lake restoration efforts. The analyses of the pair-wise correlations across time series revealed a strong synchrony in climatic variables among the lakes. A significant, but weak increase in air temperature was observed and resulted in a corresponding increase in surface water temperature only in summer. Lake physico-chemical variables had weaker synchrony than climatic variables. Synchrony in water temperature and stratification was stronger than lake chemistry as the former is mostly affected by atmospheric energy flux. Synchrony in the taxonomic richness of the plankton groups and phytoplankton biomass was apparent, to a similar degree as observed for lake chemistry. The synchrony and the temporal trends in lake chemistry and plankton were more pronounced for the lakes with strong re-oligotrophication. Phytoplankton biomass decreased and plankton richness increased in these lakes, with a shift from Chlorophyta dominance towards more heterogeneous phytoplankton communities. Notably, a widespread significant positive trend in plankton richness was observed not only in lakes with strong re-oligotrophication but across all lakes. The widespread increase in plankton richness coincided with widespread decrease in phosphate and total nitrogen concentrations, as well as with the trends in climate indicating a likely joint effect of nutrient reduction and climate in driving lake plankton. However, temporal changes and synchrony as well as the recovery of richness and composition of lake plankton more coherently corresponded with the nutrient loading reduction across the Danish landscape, while the role of climate control of the lake plankton was less pronounced.

Seasonal dynamics and effects of nitrogen supply rate on nitrogen and carbohydrate reserves in cutting-derived Salix viminalis plants

Science.gov (United States)

Lars Bollmark; Lisa Sennerby-Forsse; Tom Ericsson

1999-01-01

Nurient storage is an important aspect of resprouting potential and production of Salix viminalis L., a pioneer species used for biomas production in weden. Seasonal dynamics of nitrogen (N), protien, soluble arbohydrates, starches, and lipids were studied in roots, cutting, stems, and leaves during a full growth cycle induced by varying photoperiod...

Reduced calcification of marine plankton in response to increased atmospheric CO2.

Science.gov (United States)

Riebesell, U; Zondervan, I; Rost, B; Tortell, P D; Zeebe, R E; Morel, F M

2000-09-21

The formation of calcareous skeletons by marine planktonic organisms and their subsequent sinking to depth generates a continuous rain of calcium carbonate to the deep ocean and underlying sediments. This is important in regulating marine carbon cycling and ocean-atmosphere CO2 exchange. The present rise in atmospheric CO2 levels causes significant changes in surface ocean pH and carbonate chemistry. Such changes have been shown to slow down calcification in corals and coralline macroalgae, but the majority of marine calcification occurs in planktonic organisms. Here we report reduced calcite production at increased CO2 concentrations in monospecific cultures of two dominant marine calcifying phytoplankton species, the coccolithophorids Emiliania huxleyi and Gephyrocapsa oceanica. This was accompanied by an increased proportion of malformed coccoliths and incomplete coccospheres. Diminished calcification led to a reduction in the ratio of calcite precipitation to organic matter production. Similar results were obtained in incubations of natural plankton assemblages from the north Pacific ocean when exposed to experimentally elevated CO2 levels. We suggest that the progressive increase in atmospheric CO2 concentrations may therefore slow down the production of calcium carbonate in the surface ocean. As the process of calcification releases CO2 to the atmosphere, the response observed here could potentially act as a negative feedback on atmospheric CO2 levels.

Influence of ocean acidification and deep water upwelling on oligotrophic plankton communities in the subtropical North Atlantic

DEFF Research Database (Denmark)

Taucher, Jan; Bach, Lennart T.; Boxhammer, Tim

2017-01-01

Oceanic uptake of anthropogenic carbon dioxide (CO2) causes pronounced shifts in marine carbonate chemistry and a decrease in seawater pH. Increasing evidence indicates that these changes-summarized by the term ocean acidification (OA)-can significantly affect marine food webs and biogeochemical...... cycles. However, current scientific knowledge is largely based on laboratory experiments with single species and artificial boundary conditions, whereas studies of natural plankton communities are still relatively rare. Moreover, the few existing community-level studies were mostly conducted in rather...... and successfully simulated a deep water upwelling event that induced a pronounced plankton bloom. Our study revealed significant effects of OA on the entire food web, leading to a restructuring of plankton communities that emerged during the oligotrophic phase, and was further amplified during the bloom...

Hexabromocyclododecane affects benthic-pelagic coupling in an experimental ecosystem

International Nuclear Information System (INIS)

Bradshaw, Clare; Näslund, Johan; Hansen, Joakim; Kozlowsky-Suzuki, Betina; Sundström, Bo; Gustafsson, Kerstin

2015-01-01

Hexabromocyclododecane (HBCDD) is an additive brominated flame retardant and a recognized PBT chemical. However, little is known about its effects on coastal species, and even less on ecosystem effects. We investigated the dose–response effects of HBCDD over 8 months in 1000 L experimental mesocosms assembled from coastal Baltic Sea ecosystem components. HBCDD was added via spiked plankton material and a range of structural and functional endpoints were measured during the experiment. Increasing HBCDD concentration decreased the biomass of large Macoma balthica, resulting in a decreased recirculation of nutrients to the water. Changes in plankton communities were also observed, either due to direct toxic HBCDD effects or indirect via changes in benthic-pelagic coupling of nutrients. Such complex ecosystem responses can only be quantified and understood by using realistic experimental set-ups, and including knowledge of system-specific ecological interactions. This is the first study of HBCDD effects on ecosystem level. - Graphical abstract: HBCDD caused direct effects on the population structure of sediment-dwelling Macoma balthica and on the plankton community. Indirect HBCDD effects via reduced nutrient remineralization by M. balthica affected nutrient levels in the water, likely leading to additional changes in plankton community structure. Seasonal effects were large and affected the whole system including nutrient dynamics as well as plankton community structure. Display Omitted - Highlights: • HBCDD caused effects on benthic population structure and ecosystem function. • Large seasonal effects highlight the importance of using relevant experimental conditions. • A realistic exposure pathway was applied by using HBCDD enriched plankton material. • This is the first study of HBCDD effects on ecosystem level, coupling benthic and pelagic communities. - HBCDD has a dose-dependent effect on benthic-pelagic coupling.

Co-existence of Anaerobic Ammonium Oxidation Bacteria and Denitrifying Anaerobic Methane Oxidation Bacteria in Sewage Sludge: Community Diversity and Seasonal Dynamics

DEFF Research Database (Denmark)

Xu, Sai; Lu, Wenjing; Mustafa, Muhammad Farooq

2017-01-01

Anaerobic ammonium oxidation (ANAMMOX) and denitrifying anaerobic methane oxidation (DAMO) have been recently discovered as relevant processes in the carbon and nitrogen cycles of wastewater treatment plants. In this study, the seasonal dynamics of ANAMMOX and DAMO bacterial community structures......, and an unknown cluster was primarily detected in autumn and winter. Similar patterns of seasonal variation in the community structure of DAMO bacteria were also observed. Group B was the dominant in spring and summer, whereas in autumn and winter, group A and group B presented almost the same proportion...

Dynamics of the Water Circulations in the Southern South China Sea and Its Seasonal Transports.

Science.gov (United States)

Daryabor, Farshid; Ooi, See Hai; Samah, Azizan Abu; Akbari, Abolghasem

2016-01-01

A three-dimensional Regional Ocean Modeling System is used to study the seasonal water circulations and transports of the Southern South China Sea. The simulated seasonal water circulations and estimated transports show consistency with observations, e.g., satellite altimeter data set and re-analysis data of the Simple Ocean Data Assimilation. It is found that the seasonal water circulations are mainly driven by the monsoonal wind stress and influenced by the water outflow/inflow and associated currents of the entire South China Sea. The intrusion of the strong current along the East Coast of Peninsular Malaysia and the eddies at different depths in all seasons are due to the conservation of the potential vorticity as the depth increases. Results show that the water circulation patterns in the northern part of the East Coast of Peninsular Malaysia are generally dominated by the geostrophic currents while those in the southern areas are due solely to the wind stress because of negligible Coriolis force there. This study clearly shows that individual surface freshwater flux (evaporation minus precipitation) controls the sea salinity balance in the Southern South China Sea thermohaline circulations. Analysis of climatological data from a high resolution Regional Ocean Modeling System reveals that the complex bathymetry is important not only for water exchange through the Southern South China Sea but also in regulating various transports across the main passages in the Southern South China Sea, namely the Sunda Shelf and the Strait of Malacca. Apart from the above, in comparision with the dynamics of the Sunda Shelf, the Strait of Malacca reflects an equally significant role in the annual transports into the Andaman Sea.

Comparative proteomic analysis of Listeria monocytogenes exposed to enterocin AS-48 in planktonic and sessile states.

Science.gov (United States)

Caballero Gómez, Natacha; Abriouel, Hikmate; Ennahar, Said; Gálvez, Antonio

2013-10-15

Enterocin AS-48 is a cyclic peptide of great interest for application in food preservation and sanitation. In the present study, the proteome response of Listeria monocytogenes to purified enterocin AS-48 was studied under two different conditions: planktonic cells and sessile cells grown on polystyrene plates. Ten different proteins were differentially expressed in planktonic L. monocytogenes cells treated with 0.1 μg/ml enterocin AS-48 compared to the untreated controls. Overexpressed proteins were related to stress response (DnaK) or carbohydrate transport and metabolism, while underexpressed and unexpressed proteins were related to metabolism (such as glyceraldehyde-3-phosphate dehydrogenase, pyruvate oxidase, glutamate dehydrogenase or glutamate decarboxylase) or stress (GroEL). In the sessile state, L. monocytogenes cells tolerated up to 10 μg/ml bacteriocin, and the treated biofilm cells overexpressed a set of 11 proteins, some of which could be related to stress response (DnaK, GroEL), protein synthesis and carbohydrate metabolism, while glyceraldehyde-3-phosphate dehydrogenase was the only unexpressed protein. Some of the overexpressed proteins (such as elongation factor Tu and GroEL) could also be implicated in cell adhesion. These results suggest different cell responses of L. monocytogenes to enterocin AS-48 in the planktonic and in the sessile state, including stress response and cell metabolism proteins. While in the planktonic state the bacterium may tend to compensate for the cytoplasmic cell permeability changes induced by AS-48 by reinforcing carbohydrate transport and metabolism, sessile cells seem to respond by shifting carbohydrate metabolism and reinforcing protein synthesis. Stress response proteins also seem to be important in the response to AS-48, but the stress response seems to be different in planktonic and in sessile cells. © 2013.

Effects of drought season length on live moisture content dynamic in Mediterranean shrubs: 8 years of data

Science.gov (United States)

Pellizzaro, Grazia; Ventura, Andrea; Bortolu, Sara; Duce, Pierpaolo

2017-04-01

Mediterranean shrubs are an important component of Mediterranean vegetation communities. In this kind of vegetation, live fuel is a relevant component of the available fuel which catches fire and, consequently, its water content plays an important role in determining fire occurrence and spread. In live plant, water content patterns are related to both environmental conditions (e.g. meteorological variables, soil water availability) and ecophysiological characteristics of the plant species. According to projections on future climate, an increase in risk of summer droughts is likely to take place in Southern Europe. More prolonged drought seasons induced by climatic changes are likely to influence general flammability characteristics of fuel. In addition, variations in precipitation and mean temperature could directly affect fuel water status and length of critical periods of high ignition danger for Mediterranean ecosystems. The aims of this work were to analyse the influence of both weather seasonality and inter-annual weather variability on live fuel moisture content within and among some common Mediterranean species, and to investigate the effects of prolonged drought season on live moisture content dynamic. The study was carried out in North Sardinia (Italy). Measurements of LFMC seasonal pattern of two really common and flammable Mediterranean shrub species (Cistus monspeliensis and Rosmarinus officinalis) were performed periodically for 8 years. Meteorological variables were also recorded. Relationships between live fuel moisture content and environmental conditions (i.e. rainfall, air temperature and soil moisture) were investigated and effects of different lengths of drought season on LFMC pattern were analysed. Results showed that distribution and amount of rainfall affected seasonal variation of live fuel moisture content. In particular more prolonged drought seasons caused a longer period in which LFMC was below 95 -100% that is commonly considered as

Density and climate influence seasonal population dynamics in an Arctic ungulate

DEFF Research Database (Denmark)

Mortensen, Lars O.; Moshøj, Charlotte; Forchhammer, Mads C.

2016-01-01

The locally migratory behavior of the high arctic muskox (Ovibos muschatus) is a central component of the breeding and winter survival strategies applied to cope with the highly seasonal arctic climate. However, altered climate regimes affecting plant growth are likely to affect local migration...... cover), forage availability (length of growth season), and the number of adult females available per male (operational sex ratio) influence changes in the seasonal density dependence, abundance, and immigration rate of muskoxen into the valley. The results suggested summer temperature as the major...... controlling factor in the seasonal, local-scale migration of muskoxen at Zackenberg. Specifically, higher summer temperatures, defined as the cumulative average daily positive degrees in June, July, and August, resulted in decreased density dependence and, consequently, increase in the seasonal abundance...

The Effect of Seasonal Weather Variation on the Dynamics of the Plague Disease

Directory of Open Access Journals (Sweden)

Rigobert C. Ngeleja

2017-01-01

Full Text Available Plague is a historic disease which is also known to be the most devastating disease that ever occurred in human history, caused by gram-negative bacteria known as Yersinia pestis. The disease is mostly affected by variations of weather conditions as it disturbs the normal behavior of main plague disease transmission agents, namely, human beings, rodents, fleas, and pathogens, in the environment. This in turn changes the way they interact with each other and ultimately leads to a periodic transmission of plague disease. In this paper, we formulate a periodic epidemic model system by incorporating seasonal transmission rate in order to study the effect of seasonal weather variation on the dynamics of plague disease. We compute the basic reproduction number of a proposed model. We then use numerical simulation to illustrate the effect of different weather dependent parameters on the basic reproduction number. We are able to deduce that infection rate, progression rates from primary forms of plague disease to more severe forms of plague disease, and the infectious flea abundance affect, to a large extent, the number of bubonic, septicemic, and pneumonic plague infective agents. We recommend that it is more reasonable to consider these factors that have been shown to have a significant effect on RT for effective control strategies.

Ecological dispersal barrier across the equatorial Atlantic in a migratory planktonic copepod

Science.gov (United States)

Goetze, Erica; Hüdepohl, Patricia T.; Chang, Chantel; Van Woudenberg, Lauren; Iacchei, Matthew; Peijnenburg, Katja T. C. A.

2017-11-01

Resolving the large-scale genetic structure of plankton populations is important to understanding their responses to climate change. However, few studies have reported on the presence and geographic extent of genetically distinct populations of marine zooplankton at ocean-basin scales. Using mitochondrial sequence data (mtCOI, 718 animals) from 18 sites across a basin-scale Atlantic transect (39°N-40°S), we show that populations of the dominant migratory copepod, Pleuromamma xiphias, are genetically subdivided across subtropical and tropical waters (global FST = 0.15, global ΦST = 0.21, both P marine plankton, and we suggest that this may be a dominant mechanism driving the large-scale genetic structure of zooplankton species. Our results also demonstrate the potential importance of the Atlantic equatorial province as a region of evolutionary novelty for the holoplankton.

Seasonal dynamics of light absorption by chromophoric dissolved organic matter (CDOM) in the NW Mediterranean Sea (BOUSSOLE site)

Science.gov (United States)

Organelli, Emanuele; Bricaud, Annick; Antoine, David; Matsuoka, Atsushi

2014-09-01

We analyze a two-year time-series of chromophoric dissolved organic matter (CDOM) light absorption measurements in the upper 400 m of the water column at the BOUSSOLE site in the NW Mediterranean Sea. The seasonal dynamics of the CDOM light absorption coefficients at 440 nm (acdom(440)) is essentially characterized by (i) subsurface maxima forming in spring and progressively reinforcing throughout summer, (ii) impoverishment in the surface layer throughout summer and (iii) vertical homogeneity in winter. Seasonal variations of the spectral dependence of CDOM absorption, as described by the exponential slope value (Scdom), are characterized by highest values in summer and autumn at the surface and low values at the depths of acdom(440) subsurface maxima or just below them. Variations of acdom(440) are likely controlled by microbial digestion of phytoplankton cells, which leads to CDOM production, and by photochemical destruction (photobleaching), which leads to CDOM degradation. Photobleaching is also the main driver of Scdom variations. Consistently with previous observations, acdom(440) for a given chlorophyll a concentration is higher than expected from Case I waters bio-optical models. The total non-water light absorption budget shows that surface waters at the BOUSSOLE site are largely dominated by CDOM during all seasons but the algal bloom in March and April. These results improve the knowledge of CDOM absorption dynamics in the Mediterranean Sea, which is scarcely documented. In addition, they open the way to improved algorithms for the retrieval of CDOM absorption from field or satellite radiometric measurements.

Effects of Forest Gaps on Litter Lignin and Cellulose Dynamics Vary Seasonally in an Alpine Forest

Directory of Open Access Journals (Sweden)

Han Li

2016-01-01

Full Text Available To understand how forest gaps and the associated canopy control litter lignin and cellulose dynamics by redistributing the winter snow coverage and hydrothermal conditions in the growing season, a field litterbag trial was conducted in the alpine Minjiang fir (Abies faxoniana Rehder and E.H. Wilson forest in a transitional area located in the upper reaches of the Yangtze River and the eastern Tibetan Plateau. Over the first year of litter decomposition, the litter exhibited absolute cellulose loss and absolute lignin accumulation except for the red birch litter. The changes in litter cellulose and lignin were significantly affected by the interactions among gap position, period and species. Litter cellulose exhibited a greater loss in the winter with the highest daily loss rate observed during the snow cover period. Both cellulose and lignin exhibited greater changes under the deep snow cover at the gap center in the winter, but the opposite pattern occurred under the closed canopy in the growing season. The results suggest that decreased snowpack seasonality due to winter warming may limit litter cellulose and lignin degradation in alpine forest ecosystems, which could further inhibit litter decomposition. As a result, the ongoing winter warming and gap vanishing would slow soil carbon sequestration from foliar litter in cold biomes.

Seasonality as a Parrondian game

Energy Technology Data Exchange (ETDEWEB)

Peacock-Lopez, Enrique, E-mail: epeacock@williams.edu [Department of Chemistry, University of Cape Town, Rondebosch, 7701 Cape Town (South Africa)

2011-08-15

Switching strategies can be related to the so-called Parrondian games, where the alternation of two losing games yields a winning game. We consider two dynamics that by themselves yield undesirable behaviors, but when alternated, yield a desirable oscillatory behavior. In the analysis of the alternate-logistic map, we prove that alternating parameter values yielding extinction with parameter values associated with chaotic dynamics results in periodic trajectories. Ultimately, we consider a four season logistic model with either migration or immigration. -- Highlights: → We consider the logistic map as a population model and include parameter switching. → From bifurcation diagrams, we find parameters that follow the Parrondian Paradox. → We study a four-season Parrondian model that includes migration or immigration.

Seasonality as a Parrondian game

International Nuclear Information System (INIS)

Peacock-Lopez, Enrique

2011-01-01

Switching strategies can be related to the so-called Parrondian games, where the alternation of two losing games yields a winning game. We consider two dynamics that by themselves yield undesirable behaviors, but when alternated, yield a desirable oscillatory behavior. In the analysis of the alternate-logistic map, we prove that alternating parameter values yielding extinction with parameter values associated with chaotic dynamics results in periodic trajectories. Ultimately, we consider a four season logistic model with either migration or immigration. -- Highlights: → We consider the logistic map as a population model and include parameter switching. → From bifurcation diagrams, we find parameters that follow the Parrondian Paradox. → We study a four-season Parrondian model that includes migration or immigration.

Examining Dynamical Processes of Tropical Mountain Hydroclimate, Particularly During the Wet Season, Through Integration of Autonomous Sensor Observations and Climate Modeling

Science.gov (United States)

Hellstrom, R. A.; Fernandez, A.; Mark, B. G.; Covert, J. M.

2016-12-01

Peru is facing imminent water resource issues as glaciers retreat and demand increases, yet limited observations and model resolution hamper understanding of hydrometerological processes on local to regional scales. Much of current global and regional climate studies neglect the meteorological forcing of lapse rates (LRs) and valley and slope wind dynamics on critical components of the Peruvian Andes' water-cycle, and herein we emphasize the wet season. In 2004 and 2005 we installed an autonomous sensor network (ASN) within the glacierized Llanganuco Valley, Cordillera Blanca (9°S), consisting of discrete, cost-effective, automatic temperature loggers located along the valley axis and anchored by two automatic weather stations. Comparisons of these embedded hydrometeorological measurements from the ASN and climate modeling by dynamical downscaling using the Weather Research and Forecasting model (WRF) elucidate distinct diurnal and seasonal characteristics of the mountain wind regime and LRs. Wind, temperature, humidity, and cloud simulations suggest that thermally driven up-valley and slope winds converging with easterly flow aloft enhance late afternoon and evening cloud development which helps explain nocturnal wet season precipitation maxima measured by the ASN. Furthermore, the extreme diurnal variability of along-valley-axis LR, and valley wind detected from ground observations and confirmed by dynamical downscaling demonstrate the importance of realistic scale parameterizations of the atmospheric boundary layer to improve regional climate model projections in mountainous regions. We are currently considering to use intermediate climate models such as ICAR to reduce computing cost and we continue to maintain the ASN in the Cordillera Blanca.

Plankton community composition and vertical migration during polar night in Kongsfjorden

DEFF Research Database (Denmark)

Grenvald, Julie Cornelius; Callesen, Trine Abraham; Daase, Malin

2016-01-01

characterize the plankton community composition during the polar night using water samplers and zooplankton net samples (50, 64, 200, 1500 lm), supplemented by acoustics (ADCPs, 300 kHz), to address a previously unresolved question–which species of zooplankton perform diel vertical migration during the polar...

The ecology of plankton in biological oceanography: a tribute to Marta Estrada’s task

Directory of Open Access Journals (Sweden)

Jordi Solé

2016-09-01

Full Text Available Plankton ecology has been the object of intense research and progress in the last few decades. This has been partly due to technological advances that have facilitated the multidisciplinary and high-resolution sampling of ecosystems and improved experimentation and analytical methodologies, and to sophisticated modelling. In addition, exceptional researchers have had the vision to integrate all these innovative tools to form a solid theoretical background in ecology. Here we provide an overview of the outstanding research work conducted by Professor Marta Estrada and her pioneering contribution to different areas of research in the last four decades. Her research in biological oceanography has mainly focussed on phytoplankton ecology, taxonomy and physiology, the functional structure of plankton communities, and physical and biological interactions in marine ecosystems. She has combined a variety of field and laboratory approaches and methodologies, from microscopy to satellite observations, including in-depth statistical data analysis and modelling. She has been a reference for scientists all over the world. Here, her contributions to plankton ecology are summarized by some of her students and closest collaborators, who had the privilege to share their science and everyday experiences with her.

Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaea.

Science.gov (United States)

Zhu, Chun; Wakeham, Stuart G; Elling, Felix J; Basse, Andreas; Mollenhauer, Gesine; Versteegh, Gerard J M; Könneke, Martin; Hinrichs, Kai-Uwe

2016-12-01

Membrane lipids of marine planktonic archaea have provided unique insights into archaeal ecology and paleoceanography. However, past studies of archaeal lipids in suspended particulate matter (SPM) and sediments mainly focused on a small class of fully saturated glycerol dibiphytanyl glycerol tetraether (GDGT) homologues identified decades ago. The apparent low structural diversity of GDGTs is in strong contrast to the high diversity of metabolism and taxonomy among planktonic archaea. Furthermore, adaptation of archaeal lipids in the deep ocean remains poorly constrained. We report the archaeal lipidome in SPM from diverse oceanic regimes. We extend the known inventory of planktonic archaeal lipids to include numerous unsaturated archaeal ether lipids (uns-AELs). We further reveal (i) different thermal regulations and polar headgroup compositions of membrane lipids between the epipelagic (≤ 100 m) and deep (>100 m) populations of archaea, (ii) stratification of unsaturated GDGTs with varying redox conditions, and (iii) enrichment of tetra-unsaturated archaeol and fully saturated GDGTs in epipelagic and deep oxygenated waters, respectively. Such stratified lipid patterns are consistent with the typical distribution of archaeal phylotypes in marine environments. We, thus, provide an ecological context for GDGT-based paleoclimatology and bring about the potential use of uns-AELs as biomarkers for planktonic Euryarchaeota. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Chemical Control for Host-Parasitoid Model within the Parasitism Season and Its Complex Dynamics

Directory of Open Access Journals (Sweden)

Tao Wang

2016-01-01

Full Text Available In the present paper, we develop a host-parasitoid model with Holling type II functional response function and chemical control, which can be applied at any time of each parasitism season or pest generation, and focus on addressing the importance of the timing of application pesticide during the parasitism season or pest generation in successful pest control. Firstly, the existence and stability of both the host and parasitoid populations extinction equilibrium and parasitoid-free equilibrium have been investigated. Secondly, the effects of key parameters on the threshold conditions have been discussed in more detail, which shows the importance of pesticide application times on the pest control. Thirdly, the complex dynamics including multiple attractors coexistence, chaotic behavior, and initial sensitivity have been studied by using numerical bifurcation analyses. Finally, the uncertainty and sensitivity of all the parameters on the solutions of both the host and parasitoid populations are investigated, which can help us to determine the key parameters in designing the pest control strategy. The present research can help us to further understand the importance of timings of pesticide application in the pest control and to improve the classical chemical control and to make management decisions.

Comparison of the cytotoxic effect of polystyrene latex nanoparticles on planktonic cells and bacterial biofilms

International Nuclear Information System (INIS)

Nomura, Toshiyuki; Fujisawa, Eri; Itoh, Shikibu; Konishi, Yasuhiro

2016-01-01

The cytotoxic effect of positively charged polystyrene latex nanoparticles (PSL NPs) was compared between planktonic bacterial cells and bacterial biofilms using confocal laser scanning microscopy, atomic force microscopy, and a colony counting method. Pseudomonas fluorescens, which is commonly used in biofilm studies, was employed as the model bacteria. We found that the negatively charged bacterial surface of the planktonic cells was almost completely covered with positively charged PSL NPs, leading to cell death, as indicated by the NP concentration being greater than that required to achieve single layer coverage. In addition, the relationship between surface coverage and cell viability of P. fluorescens cells correlated well with the findings in other bacterial cells (Escherichia coli and Lactococcuslactis). However, most of the bacterial cells that formed the biofilm were viable despite the positively charged PSL NPs being highly toxic to planktonic bacterial cells. This indicated that bacterial cells embedded in the biofilm were protected by self-produced extracellular polymeric substances (EPS) that provide resistance to antibacterial agents. In conclusion, mature biofilms covered with EPS exhibit resistance to NP toxicity as well as antibacterial agents.

Comparison of the cytotoxic effect of polystyrene latex nanoparticles on planktonic cells and bacterial biofilms

Energy Technology Data Exchange (ETDEWEB)

Nomura, Toshiyuki, E-mail: nomura@chemeng.osakafu-u.ac.jp; Fujisawa, Eri; Itoh, Shikibu; Konishi, Yasuhiro [Osaka Prefecture University, Department of Chemical Engineering (Japan)

2016-06-15

The cytotoxic effect of positively charged polystyrene latex nanoparticles (PSL NPs) was compared between planktonic bacterial cells and bacterial biofilms using confocal laser scanning microscopy, atomic force microscopy, and a colony counting method. Pseudomonas fluorescens, which is commonly used in biofilm studies, was employed as the model bacteria. We found that the negatively charged bacterial surface of the planktonic cells was almost completely covered with positively charged PSL NPs, leading to cell death, as indicated by the NP concentration being greater than that required to achieve single layer coverage. In addition, the relationship between surface coverage and cell viability of P. fluorescens cells correlated well with the findings in other bacterial cells (Escherichia coli and Lactococcuslactis). However, most of the bacterial cells that formed the biofilm were viable despite the positively charged PSL NPs being highly toxic to planktonic bacterial cells. This indicated that bacterial cells embedded in the biofilm were protected by self-produced extracellular polymeric substances (EPS) that provide resistance to antibacterial agents. In conclusion, mature biofilms covered with EPS exhibit resistance to NP toxicity as well as antibacterial agents.

Comparison of the cytotoxic effect of polystyrene latex nanoparticles on planktonic cells and bacterial biofilms

Science.gov (United States)

Nomura, Toshiyuki; Fujisawa, Eri; Itoh, Shikibu; Konishi, Yasuhiro

2016-06-01

The cytotoxic effect of positively charged polystyrene latex nanoparticles (PSL NPs) was compared between planktonic bacterial cells and bacterial biofilms using confocal laser scanning microscopy, atomic force microscopy, and a colony counting method. Pseudomonas fluorescens, which is commonly used in biofilm studies, was employed as the model bacteria. We found that the negatively charged bacterial surface of the planktonic cells was almost completely covered with positively charged PSL NPs, leading to cell death, as indicated by the NP concentration being greater than that required to achieve single layer coverage. In addition, the relationship between surface coverage and cell viability of P. fluorescens cells correlated well with the findings in other bacterial cells ( Escherichia coli and Lactococcus lactis). However, most of the bacterial cells that formed the biofilm were viable despite the positively charged PSL NPs being highly toxic to planktonic bacterial cells. This indicated that bacterial cells embedded in the biofilm were protected by self-produced extracellular polymeric substances (EPS) that provide resistance to antibacterial agents. In conclusion, mature biofilms covered with EPS exhibit resistance to NP toxicity as well as antibacterial agents.

Seasonal Dynamics of Phlebotomine Sand Fly Species Proven Vectors of Mediterranean Leishmaniasis Caused by Leishmania infantum.

Directory of Open Access Journals (Sweden)

Bulent Alten

2016-02-01

Full Text Available The recent geographical expansion of phlebotomine vectors of Leishmania infantum in the Mediterranean subregion has been attributed to ongoing climate changes. At these latitudes, the activity of sand flies is typically seasonal; because seasonal phenomena are also sensitive to general variations in climate, current phenological data sets can provide a baseline for continuing investigations on sand fly population dynamics that may impact on future scenarios of leishmaniasis transmission. With this aim, in 2011-2013 a consortium of partners from eight Mediterranean countries carried out entomological investigations in sites where L. infantum transmission was recently reported.A common protocol for sand fly collection included monthly captures by CDC light traps, complemented by sticky traps in most of the sites. Collections were replicated for more than one season in order to reduce the effects of local weather events. In each site, the trapping effort was left unchanged throughout the survey to legitimate inter-seasonal comparisons. Data from 99,000 collected specimens were analyzed, resulting in the description of seasonal dynamics of 56,000 sand flies belonging to L. infantum vector species throughout a wide geographical area, namely P. perniciosus (Portugal, Spain and Italy, P. ariasi (France, P. neglectus (Greece, P. tobbi (Cyprus and Turkey, P. balcanicus and P. kandelakii (Georgia. Time of sand fly appearance/disappearance in collections differed between sites, and seasonal densities showed variations in each site. Significant correlations were found between latitude/mean annual temperature of sites and i the first month of sand fly appearance, that ranged from early April to the first half of June; ii the type of density trend, varying from a single peak in July/August to multiple peaks increasing in magnitude from May through September. A 3-modal trend, recorded for P. tobbi in Cyprus, represents a novel finding for a L. infantum vector

Seasonal Dynamics of Phlebotomine Sand Fly Species Proven Vectors of Mediterranean Leishmaniasis Caused by Leishmania infantum.

Science.gov (United States)

Alten, Bulent; Maia, Carla; Afonso, Maria Odete; Campino, Lenea; Jiménez, Maribel; González, Estela; Molina, Ricardo; Bañuls, Anne Laure; Prudhomme, Jorian; Vergnes, Baptiste; Toty, Celine; Cassan, Cécile; Rahola, Nil; Thierry, Magali; Sereno, Denis; Bongiorno, Gioia; Bianchi, Riccardo; Khoury, Cristina; Tsirigotakis, Nikolaos; Dokianakis, Emmanouil; Antoniou, Maria; Christodoulou, Vasiliki; Mazeris, Apostolos; Karakus, Mehmet; Ozbel, Yusuf; Arserim, Suha K; Erisoz Kasap, Ozge; Gunay, Filiz; Oguz, Gizem; Kaynas, Sinan; Tsertsvadze, Nikoloz; Tskhvaradze, Lamzira; Giorgobiani, Ekaterina; Gramiccia, Marina; Volf, Petr; Gradoni, Luigi

2016-02-01

The recent geographical expansion of phlebotomine vectors of Leishmania infantum in the Mediterranean subregion has been attributed to ongoing climate changes. At these latitudes, the activity of sand flies is typically seasonal; because seasonal phenomena are also sensitive to general variations in climate, current phenological data sets can provide a baseline for continuing investigations on sand fly population dynamics that may impact on future scenarios of leishmaniasis transmission. With this aim, in 2011-2013 a consortium of partners from eight Mediterranean countries carried out entomological investigations in sites where L. infantum transmission was recently reported. A common protocol for sand fly collection included monthly captures by CDC light traps, complemented by sticky traps in most of the sites. Collections were replicated for more than one season in order to reduce the effects of local weather events. In each site, the trapping effort was left unchanged throughout the survey to legitimate inter-seasonal comparisons. Data from 99,000 collected specimens were analyzed, resulting in the description of seasonal dynamics of 56,000 sand flies belonging to L. infantum vector species throughout a wide geographical area, namely P. perniciosus (Portugal, Spain and Italy), P. ariasi (France), P. neglectus (Greece), P. tobbi (Cyprus and Turkey), P. balcanicus and P. kandelakii (Georgia). Time of sand fly appearance/disappearance in collections differed between sites, and seasonal densities showed variations in each site. Significant correlations were found between latitude/mean annual temperature of sites and i) the first month of sand fly appearance, that ranged from early April to the first half of June; ii) the type of density trend, varying from a single peak in July/August to multiple peaks increasing in magnitude from May through September. A 3-modal trend, recorded for P. tobbi in Cyprus, represents a novel finding for a L. infantum vector. Adults

Heterogeneity in physical, chemical and plankton-community structures in Lake Tanganyika

NARCIS (Netherlands)

Langenberg, V.T.; Tumba, J.M.; Tshibangu, K.; Lukwesa, C.; Chitamwebwa, D.; Bwebwa, D.; Makasa, L.; Roijackers, R.M.M.

2008-01-01

From 28 August to 6 September 1995, we monitored the lake-wide physical, chemical and biological properties of the pelagic waters in Lake Tanganyika. The aim of this study was to examine the spatial environmental variability and its relation to fluctuations in plankton abundance and community

Spindle-shaped Microstructures: Potential Models for Planktonic Life Forms on Other Worlds

Science.gov (United States)

Oehler, Dorothy Z.; Walsh, Maud M.; Sugitani, Kenichiro; House, Christopher H.

2014-01-01

Spindle-shaped, organic microstructures ("spindles") are now known from Archean cherts in three localities (Figs. 1-4): The 3 Ga Farrel Quartzite from the Pilbara of Australia [1]; the older, 3.3-3.4 Ga Strelley Pool Formation, also from the Pilbara of Australia [2]; and the 3.4 Ga Kromberg Formation of the Barberton Mountain Land of South Africa [3]. Though the spindles were previously speculated to be pseudofossils or epigenetic organic contaminants, a growing body of data suggests that these structures are bona fide microfossils and further, that they are syngenetic with the Archean cherts in which they occur [1-2, 4-10]. As such, the spindles are among some of the oldest-known organically preserved microfossils on Earth. Moreover, recent delta C-13 study of individual spindles from the Farrel Quartzite (using Secondary Ion Mass Spectrometry [SIMS]) suggests that the spindles may have been planktonic (living in open water), as opposed to benthic (living as bottom dwellers in contact with muds or sediments) [9]. Since most Precambrian microbiotas have been described from benthic, matforming communities, a planktonic lifestyle for the spindles suggests that these structures could represent a segment of the Archean biosphere that is poorly known. Here we synthesize the recent work on the spindles, and we add new observations regarding their geographic distribution, robustness, planktonic habit, and long-lived success. We then discuss their potential evolutionary and astrobiological significance.

Susceptibility of Salmonella Biofilm and Planktonic Bacteria to Common Disinfectant Agents Used in Poultry Processing.

Science.gov (United States)

Chylkova, Tereza; Cadena, Myrna; Ferreiro, Aura; Pitesky, Maurice

2017-07-01

Poultry contaminated with Salmonella enterica subsp. enterica are a major cause of zoonotic foodborne gastroenteritis. Salmonella Heidelberg is a common serotype of Salmonella that has been implicated as a foodborne pathogen associated with the consumption of improperly prepared chicken. To better understand the effectiveness of common antimicrobial disinfectants (i.e., peroxyacetic acid [PAA], acidified hypochlorite [aCH], and cetylpyridinium chloride [CPC]), environmental isolates of nontyphoidal Salmonella were exposed to these agents under temperature, concentration, and contact time conditions consistent with poultry processing. Under simulated processing conditions (i.e., chiller tank and dipping stations), the bacteriostatic and bactericidal effects of each disinfectant were assessed against biofilm and planktonic cultures of each organism in a disinfectant challenge. Log reductions, planktonic MICs, and mean biofilm eradication concentrations were computed. The biofilms of each Salmonella isolate were more resistant to the disinfectants than were their planktonic counterparts. Although PAA was bacteriostatic and bactericidal against the biofilm and planktonic Salmonella isolates tested at concentrations up to 64 times the concentrations commonly used in a chiller tank during poultry processing, aCH was ineffective against the same isolates under identical conditions. At the simulated 8-s dipping station, CPC was bacteriostatic against all seven and bactericidal against six of the seven Salmonella isolates in their biofilm forms at concentrations within the regulatory range. These results indicate that at the current contact times and concentrations, aCH and PAA are not effective against these Salmonella isolates in their biofilm state. The use of CPC should be considered as a tool for controlling Salmonella biofilms in poultry processing environments.

Influence of glyphosate in planktonic and biofilm growth of Pseudomonas aeruginosa

Directory of Open Access Journals (Sweden)

Ilana Schneider Lima

2014-09-01

Full Text Available This study evaluated the impact of different concentrations of glyphosate (Rondup® on planktonic and biofilm growth of P. aeruginosa. Aerobic and anaerobic cultures of P. aeruginosa ATCC®15442 inoculated in MHB + glyphosate (0.845 ppm, 1.690 ppm, 8.45 ppm, 16.90 ppm, 84.50 ppm, 169 ppm, 845 ppm, and 1690 ppm and cultured in normoxia and anoxia, following their OD560nm every hour for 24 h. Biofilms of adapted cells were formed in the presence of glyphosate (0.845 to 1690 ppm in normoxia and anoxia for 36 h. Glyphosate at concentrations higher than 84.5 ppm reduces the cell density of planktonic aerobic cultures (p 0.05, and more pronounced over 169 ppm. Anaerobic biofilms have their growth more readily favored (p < 0.05, regardless of concentration. In a concentration-dependent manner, glyphosate interferes with the growth ability of P. aeruginosa ATCC®15442.

Millennial-scale plankton regime shifts in the subtropical North Pacific Ocean.

Science.gov (United States)

McMahon, Kelton W; McCarthy, Matthew D; Sherwood, Owen A; Larsen, Thomas; Guilderson, Thomas P

2015-12-18

Climate change is predicted to alter marine phytoplankton communities and affect productivity, biogeochemistry, and the efficacy of the biological pump. We reconstructed high-resolution records of changing plankton community composition in the North Pacific Ocean over the past millennium. Amino acid-specific δ(13)C records preserved in long-lived deep-sea corals revealed three major plankton regimes corresponding to Northern Hemisphere climate periods. Non-dinitrogen-fixing cyanobacteria dominated during the Medieval Climate Anomaly (950-1250 Common Era) before giving way to a new regime in which eukaryotic microalgae contributed nearly half of all export production during the Little Ice Age (~1400-1850 Common Era). The third regime, unprecedented in the past millennium, began in the industrial era and is characterized by increasing production by dinitrogen-fixing cyanobacteria. This picoplankton community shift may provide a negative feedback to rising atmospheric carbon dioxide concentrations. Copyright © 2015, American Association for the Advancement of Science.

Radiocarbon evidence that carbon from the Deepwater Horizon spill entered the planktonic food web of the Gulf of Mexico

International Nuclear Information System (INIS)

Chanton, J P; Wilson, R M; Mickle, A; Cherrier, J; Sarkodee-Adoo, J; Bosman, S; Graham, W M

2012-01-01

The Deepwater Horizon (Macondo) oil spill released large volumes of oil and gas of distinct carbon isotopic composition to the northern Gulf of Mexico, allowing Graham et al (2010 Environ. Res. Lett. 5 045301) to use stable carbon isotopes (δ 13 C) to infer the introduction of spilled oil into the planktonic food web. Surface ocean organic production and measured oil are separated by 5–7‰ in stable carbon isotope (δ 13 C) space, while in radiocarbon (Δ 14 C) space these two potential sources are separated by more than 1000‰. Thus radiocarbon isotopes provide a more sensitive tracer by which to infer possible introduction of Macondo oil into the food web. We measured Δ 14 C and δ 13 C in plankton collected from within 100 km of the spill site as well as in coastal and offshore DIC (dissolved inorganic carbon or ΣCO 2 ) to constrain surface production values. On average, plankton values were depleted in 14 C relative to surface DIC, and we found a significant linear correlation between Δ 14 C and δ 13 C in plankton. Cumulatively, these results are consistent with the hypothesis that carbon released from the Deepwater Horizon spill contributed to the offshore planktonic food web. Our results support the findings of Graham et al (2010 Environ. Res. Lett. 5 045301), but we infer that methane input may be important. (letter)

Seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Province, China.

Science.gov (United States)

Briggs, Brandon R; Brodie, Eoin L; Tom, Lauren M; Dong, Hailiang; Jiang, Hongchen; Huang, Qiuyuan; Wang, Shang; Hou, Weiguo; Wu, Geng; Huang, Liuquin; Hedlund, Brian P; Zhang, Chuanlun; Dijkstra, Paul; Hungate, Bruce A

2014-06-01

Studies focusing on seasonal dynamics of microbial communities in terrestrial and marine environments are common; however, little is known about seasonal dynamics in high-temperature environments. Thus, our objective was to document the seasonal dynamics of both the physicochemical conditions and the microbial communities inhabiting hot springs in Tengchong County, Yunnan Province, China. The PhyloChip microarray detected 4882 operational taxonomic units (OTUs) within 79 bacterial phylum-level groups and 113 OTUs within 20 archaeal phylum-level groups, which are additional 54 bacterial phyla and 11 archaeal phyla to those that were previously described using pyrosequencing. Monsoon samples (June 2011) showed increased concentrations of potassium, total organic carbon, ammonium, calcium, sodium and total nitrogen, and decreased ferrous iron relative to the dry season (January 2011). At the same time, the highly ordered microbial communities present in January gave way to poorly ordered communities in June, characterized by higher richness of Bacteria, including microbes related to mesophiles. These seasonal changes in geochemistry and community structure are likely due to high rainfall influx during the monsoon season and indicate that seasonal dynamics occurs in high-temperature environments experiencing significant changes in seasonal recharge. Thus, geothermal environments are not isolated from the surrounding environment and seasonality affects microbial ecology. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.

Planktonic copepod community in the neritic area south western part of Tunis bay influenced by Meliane river supplies (south western Mediterranean sea)

OpenAIRE

Ben Lamine, Y.; Daly Yahia Kefi, O.; Daly Yahia, N.

2012-01-01

The Tunis bay is located in the North Estern coast of Tunisia and receives in its Western part flows from Meliane River. Our study aims to describe the composition and the spatiotemporal distribution of planktonic copepods in the bay in order to identify the effect of the Meliane River supplies on the community. A grid of 19 stations was investigated monthly from July 2004 to December 2004 using a 160 μm mesh size plankton net, towed obliquely from the bottom to the surface. The planktonic co...

Timing and severity of immunizing diseases in rabbits is controlled by seasonal matching of host and pathogen dynamics

OpenAIRE

Wells, Konstans; Brook, Barry W.; Lacy, Robert C.; Mutze, Greg J.; Peacock, David E.; Sinclair, Ron G.; Schwensow, Nina; Cassey, Phillip; O'Hara, Robert B.; Fordham, Damien A.

2015-01-01

Infectious diseases can exert a strong influence on the dynamics of host populations, but it remains unclear why such disease-mediated control only occurs under particular environmental conditions. We used 16 years of detailed field data on invasive European rabbits (Oryctolagus cuniculus) in Australia, linked to individual-based stochastic models and Bayesian approximations, to test whether (i) mortality associated with rabbit haemorrhagic disease (RHD) is driven primarily by seasonal matche...

Studies on planktonic decapoda and stomatopoda (Crustacea) from the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Paulinose, V.T.; Goswami, S.C.; Nair, V.R.

and longitudes 66 degrees 00' and 78 degrees 00'E and depths ranging from 25 to 500 m. Only 40 samples out of 93, contained planktonic decapods and stomatopods. Maximum number of larvae (1501/100 m3) was obtained from Station 228 (Ga. Cr. 13), a very shallow...

Effects of solar ultraviolet radiation (UVR) on molecular diversity of plankton from the Chubut rivers estuary

International Nuclear Information System (INIS)

Manrique, J.M.; Halac, S.; Calvo, A.Y.; Villafane, V.; Jones, L.R.; Helbling, W.E.

2010-01-01

Within the framework of a project designed to evaluate the impact of UVR upon estuarine plankton, we present here a molecular analysis of plankton diversity. Water samples were exposed to three radiation treatments (PAR, PAR + UV-A and PAR + UV-A + UV-B) in microcosms for ca 10 days during the Austral summer. At the beginning (t 0 ) and at the end of the experiment samples were filtered 0 through 20, 10, 5 and 0.22 μm pore sizes. The DNA amount retained in each filter indicated that most of the plankton biomass was in the 0.22-5 μm fraction at t0. In contrast, at the end of the experiment this proportion changed according to the radiation treatment and big cells (> 20 μm) dominated. An rDNA library was obtained from the DNA corresponding to the 0.22-5 μm fraction. There was no relationship between treatments and the number and frequency of restriction genotypes. Analyses of 27 clones fraction from t 0 indicated the presence of three genera of Rhodobacteraceae, one genus of Rhodospirillaceae, one SAR11 genus, one genus of Bacillaceae, an unclassified sequences of Alphaproteobacteria, Actinobacteria and Rhodospirillaceae. Also, there were six sequences similar to Ostreococcus tauri (Mamiellales). Even though the sequence analyses are still ongoing, our initial data suggest a big impact of UV-B radiation in the amount and composition of the plankton community towards big cells. (authors)

New perspectives on the functioning and evolution of photosymbiosis in plankton

Science.gov (United States)

Decelle, Johan

2013-01-01

Photosymbiosis is common and widely distributed in plankton and is considered to be beneficial for both partners (mutualism). Such intimate associations involving heterotrophic hosts and microalgal symbionts have been extensively studied in coral reefs, but in the planktonic realm, the ecology and evolution of photosymbioses remain poorly understood. Acantharia (Radiolaria) are ubiquitous and abundant heterotrophic marine protists, many of which host endosymbiotic microalgae. Two types of photosymbiosis involving acantharians have recently been described using molecular techniques: one found in a single acantharian species involving multiple microalgal partners (dinoflagellates and haptophytes), and the other observed in more than 25 acantharian species exclusively living with the haptophyte Phaeocystis. Contrary to most benthic and terrestrial mutualistic symbioses, these symbiotic associations share the common feature of involving symbionts that are abundant in their free-living stage. We propose a hypothetical framework that may explain this original mode of symbiosis, and discuss the ecological and evolutionary implications. We suggest that photosymbiosis in Acantharia, and probably in other planktonic hosts, may not be a mutualistic relationship but rather an “inverted parasitism,” from which only hosts seem to benefit by sequestrating and exploiting microalgal cells. The relatively small population size of microalgae in hospite would prevent reciprocal evolution that can select uncooperative symbionts, therefore making this horizontally-transmitted association stable over evolutionary time. The more we learn about the diversity of life and the structure of genomes, the more it appears that much of the evolution of biodiversity is about the manipulation of other species—to gain resources and, in turn, to avoid being manipulated (John Thompson, 1999). PMID:23986805

Large Plankton Enhance Heterotrophy Under Experimental Warming in a Temperate Coastal Ecosystem

KAUST Repository

Huete-Stauffer, Tamara Megan; Arandia-Gorostidi, Nestor; Gonzá lez-Bení tez, Natalia; Dí az-Pé rez, Laura; Calvo-Dí az, Alejandra; Moran, Xose Anxelu G.

2017-01-01

in February, April, August and October 2013 in coastal NE Atlantic waters, we monitored microbial plankton stocks and daily rates of primary production, bacterial heterotrophic production and respiration at in situ temperature and at 2 and 4°C over ambient

Arsenic in water, plankton and sediments off Goa coast and adjacent regions

Digital Repository Service at National Institute of Oceanography (India)

Fondekar, S.P.; Shirodkar, P.V.; Joseph, T.

as soluble inorganic arsenic and the rest as organic bound arsenic. Plankton and sediments also showed marked accumulation of this element, the average being 2.2 and 8.8 mu g/g respectively. Nearshore sediments showed higher values of arsenic indicating...

Klebsiella pneumoniae Planktonic and Biofilm Reduction by Different Plant Extracts: In Vitro Study

Directory of Open Access Journals (Sweden)

Lucas De Paula Ramos

2016-01-01

Full Text Available This study evaluated the action of Pfaffia paniculata K., Juglans regia L., and Rosmarius officinalis L. extracts against planktonic form and biofilm of Klebsiella pneumoniae (ATCC 4352. Minimum inhibitory concentration (MIC and minimum microbicidal concentration (MMC values were determined for each extract by microdilution broth method, according to Clinical and Laboratory Standards Institute. Next, antimicrobial activity of the extracts on biofilm was analyzed. For this, standardized suspension at 107 UFC/mL of K. pneumoniae was distributed into 96-well microplates (n=10 and after 48 h at 37°C and biofilm was subjected to treatment for 5 min with the extracts at a concentration of 200 mg/mL. ANOVA and Tukey tests (5% were used to verify statistical significant reduction (p<0.05 of planktonic form and biofilm. P paniculata K., R. officinalis L., and J. regia L. showed reductions in biomass of 55.6, 58.1, and 18.65% and cell viability reduction of 72.4, 65.1, and 31.5%, respectively. The reduction obtained with P. paniculata and R. officinalis extracts was similar to the reduction obtained with chlorhexidine digluconate 2%. In conclusion, all extracts have microbicidal action on the planktonic form but only P. paniculata K. and R. officinalis L. were effective against biofilm.

Using social network analysis tools in ecology : Markov process transition models applied to the seasonal trophic network dynamics of the Chesapeake Bay

NARCIS (Netherlands)

Johnson, Jeffrey C.; Luczkovich, Joseph J.; Borgatti, Stephen P.; Snijders, Tom A. B.; Luczkovich, S.P.

2009-01-01

Ecosystem components interact in complex ways and change over time due to a variety of both internal and external influences (climate change, season cycles, human impacts). Such processes need to be modeled dynamically using appropriate statistical methods for assessing change in network structure.

The influence of nitrogen inputs on biomass and trophic structure of ocean plankton: a study using biomass and stable isotope size-spectra

KAUST Repository

Mompeá n, Carmen; Bode, Antonio; Latasa, Mikel; Ferná ndez-Castro, Bieito; Mouriñ o-Carballido, Beatriz; Irigoien, Xabier

2016-01-01

Large scale patterns in planktonic food web structure were studied by applying continuous size-scaled models of biomass and δ15N to plankton samples, collected at 145 stations during the Malaspina-2010 Expedition across three ocean basins

Influence of monsoon upwelling on the planktonic foraminifera off Oman during Late Quaternary

Digital Repository Service at National Institute of Oceanography (India)

Naidu, P.D.

Planktonic foraminifer abundances, fluxes, test sizes, and coiling properties are influenced in various ways by the southwest monsoon winds and associated upwelling in the western Arabian Sea. The influence of monsoon driven upwelling...

First mesocosm experiments to study the impacts of ocean acidification on plankton communities in the NW Mediterranean Sea (MedSeA project)

Science.gov (United States)

Gazeau, F.; Sallon, A.; Maugendre, L.; Louis, J.; Dellisanti, W.; Gaubert, M.; Lejeune, P.; Gobert, S.; Borges, A. V.; Harlay, J.; Champenois, W.; Alliouane, S.; Taillandier, V.; Louis, F.; Obolensky, G.; Grisoni, J.-M.; Guieu, C.

2017-02-01

There is a growing international interest in studying the effects of ocean acidification on plankton communities that play a major role in the global carbon cycle and in the consumption of atmospheric CO2 via the so-called biological pump. Recently, several mesocosm experiments reported on the effect of ocean acidification on marine plankton communities, although the majority were performed in eutrophic conditions or following nutrient addition. The objective of the present study was to perform two mesocosm experiments in the oligo- to meso-trophic Northwestern Mediterranean Sea during two seasons with contrasting environmental conditions: in summer 2012 in the Bay of Calvi (Corsica, France) and in winter 2013 in the Bay of Villefranche (France). This paper describes the objectives of these experiments, the study sites, the experimental set-up and the environmental and experimental conditions during the two experiments. The 20-day experiment in the Bay of Calvi was undoubtedly representative of summer conditions in the Northwestern Mediterranean Sea with low nutrient and chlorophyll a concentrations, warm waters and high surface solar irradiance. In contrast, the winter experiment, which was reduced to 12 days because of bad weather conditions, failed to reproduce the mesotrophic conditions typical of the wintertime in this area. Indeed, a rapid increase in phytoplankton biomass during the acidification phase led to a strong decrease in nitrate concentrations and an unrealistic N and P co-limitation at this period of the year. An overview of the 11 other papers related to this study and published in this special issue is provided.

Bottom-up effects of climate on fish populations: data from the Continuous Plankton Recorder

DEFF Research Database (Denmark)

Pitois, S.G.; Lynam, C.P.; Jansen, Teunis

2012-01-01

The Continuous Plankton Recorder (CPR) dataset on fish larvae has an extensive spatio-temporal coverage that allows the responses of fish populations to past changes in climate variability, including abrupt changes such as regime shifts, to be investigated. The newly available dataset offers...... in the plankton ecosystem, while the larvae of migratory species such as Atlantic mackerel responded more to hydrographic changes. Climate variability seems more likely to influence fish populations through bottom-up control via a cascading effect from changes in the North Atlantic Oscillation (NAO) impacting...... with fishing effects interacting with climate effects and this study supports furthering our under - standing of such interactions before attempting to predict how fish populations respond to climate variability...

The use of dynamic computation systems in the evaluation of the damages caused by oil spill; O uso de sistemas computacionais dinamicos na avaliacao dos danos causados por derrames de petroleo

Energy Technology Data Exchange (ETDEWEB)

Barbosa, Luiz H.C.; Laurino, Luiz S.; Muelbert, Jose H. [Fundacao Universidade Federal do Rio Grande (FURG), RS (Brazil)

2004-07-01

Estuarine areas are zones of great environmental risk characterized as great sensitivity to oil and oil products spills. Traditionally, Geographic Information Systems (GIS) are used to evaluate these possible impacts. However, for some groups of organisms, like plankton, the spatial limitations of GIS become inadequate because their distributions exhibits temporal variability and are associated with dynamic environmental factors. Having this in mind, the development of a specific tool is necessary to supply this need. For the development of this tool, data of fish larvae and eggs (ichthyoplankton) from the Lagoa dos Patos Estuary (RS) were chosen as an initial group for the development of a Plankton Diagnostic System (SIDIPLA). These groups have an accentuated sensitivity to oil spills. This impact could directly affect the environment quality and indirectly the local fishing resource. SIDIPLA is elaborated from data reports covering every estuarine area and graphs are generated containing abundance of the species of fish larvae and eggs from the geographical position, season, temperature and salinity; selected by the user from an Internet page (http://corvina.lei.furg.br/sidipla). Several simulations demonstrated the strength of the system and its easy use. Furthermore this tool can be implemented in different places of the Brazilian coast and different groups of organisms. (author)

Effects of ultraviolet radiation on the lower levels of the planktonic food web in Antarctica

International Nuclear Information System (INIS)

Ferreyra, Gustavo A.; Schloss, Irene; Tosonotto, Gabriela; Calvino, Eduardo; Rodriguez, Silvia; Cantoni, Leonardo; Gonzalez, Oscar; Ulrich, Alejandro; Hernando, Marcelo; Hernandez, Edgardo; Oyarbide, Fabricio

2004-01-01

Full text: Most of the studies that investigated the effects of ultraviolet radiation (UVR, 280-400 NM) on the first levels of the marine food web used experimental approaches (in situ incubations, micro and mesocosms). However, research on the responses to UVR of the micro community in their natural environment is scarce. A time series study including most of the oceanographic parameters described as controlling bacteria and phytoplankton dynamics was carried out (PAR, tidal mixing, turbulent mixing by winds and currents, nutrient stress). In this case, however, the effects of ultraviolet A and B (UVB, 280-320 nm and UVA, 320-400 nm, respectively) were added as forcing parameters. Fieldwork was done in the vicinity of Melchior Station (64 degrees 20' S, 62 degrees 59' W, Observatory Island). It involved the automated measurement of physical variables (currents, tides and meteorological data), as well as discrete sampling of physical (salinity, temperature), chemical (macro nutrients) and biological variables (bacterial and phytoplankton abundance and production, PSI I system, photo protective compounds). Sub-surface sampling (0.5 m depth) was conducted with 5 L Niskin bottles at a fixed station (sampling every 6/12 h centered at local noon during the whole study period), and vertical profiles at 6 fixed depths (0, 5, 10, 20, 30 and 50 m) were done every four days. The whole study lasted for one month, from February 11 to March 12 2002. Average upper mixed layer (UML) was around 20 m and the depth of the euphotic zone (1% of incident radiation) for UVB and UVA was respectively 17 and 32 m, suggesting a strong influence of UVR on cells within the UML. PSII activity showed a significant inverse correlation with UVB, phased with irradiance oscillations. Bacterio plankton and phytoplankton biomass and production of both presented a similar response, but minimum values were lagged by 4-6 h from UVR maxima. Mycosporin like aminoacids (MAA's) were also phased and directly

Biofilms and planktonic cells of Deinococcus geothermalis in extreme environments

Science.gov (United States)

Panitz, Corinna; Reitz, Guenther; Rabbow, Elke; Rettberg, Petra; Flemming, Hans-Curt; Wingender, Jost; Froesler, Jan

In addition to the several extreme environments on Earth, Space can be considered as just another exceptional environment with a unique mixture of stress factors comprising UV radiation, vacuum, desiccation, temperature, ionizing radiation and microgravity. Life that processes in these environments can depend on the life forms and their state of living. The question is whether there are different strategies for individual microorganisms compared to communities of the same organisms to cope with the different factors of their surroundings. Comparative studies of the survi-val of these communities called biofilms and planktonic cell samples of Deinococcus geothermalis stand at the focal point of the presented investigations. A biofilm is a structured community of microorganisms that live encapsulated in a matrix of extracellular polymeric substances on a surface. Microorganisms living in a biofilm usually have significantly different properties to cooperate than individually living microorganisms of the same species. An advantage of the biofilm is increased resistance to various chemical and physical effects, while the dense extracellular matrix and the outer layer of the cells protect the interior of the microbial consortium. The space experiment BOSS (Biofilm organisms surfing Space) as part the ESA experimental unit EXPOSE R-2 with a planned launch date in July 2014 will be subsequently mounted on the Russian Svesda module outside the ISS. An international team of scientists coordinated by Dr. P. Rettberg will investigate the hypothesis whether microorganisms organized as biofilm outmatch the same microorganisms exposed individually in the long-term survival of the harsh environmental conditions as they occur in space and on Mars. Another protective function in the samples could be dust par-ticles for instance Mars regolith simulant contained inside the biofilms or mixed with the planktonic cells, as additional shelter especially against the extraterrestrial UV

Seasonal Oxygen Dynamics in a Thermokarst Bog in Interior Alaska: Implications for Rates of Methane Oxidation

Science.gov (United States)

Neumann, R. B.; Moorberg, C.; Wong, A.; Waldrop, M. P.; Turetsky, M. R.

2015-12-01

Methane is a potent greenhouse gas, and wetlands represent the largest natural source of methane to the atmosphere. However, much of the methane generated in anoxic wetlands never gets emitted to the atmosphere; up to >90% of generated methane can get oxidized to carbon dioxide. Thus, oxidation is an important methane sink and changes in the rate of methane oxidation can affect wetland methane emissions. Most methane is aerobically oxidized at oxic-anoxic interfaces where rates of oxidation strongly depend on methane and oxygen concentrations. In wetlands, oxygen is often the limiting substrate. To improve understanding of belowground oxygen dynamics and its impact on methane oxidation, we deployed two planar optical oxygen sensors in a thermokarst bog in interior Alaska. Previous work at this site indicated that, similar to other sites, rates of methane oxidation decrease over the growing season. We used the sensors to track spatial and temporal patterns of oxygen concentrations over the growing season. We coupled these in-situ oxygen measurements with periodic oxygen injection experiments performed against the sensor to quantify belowground rates of oxygen consumption. We found that over the season, the thickness of the oxygenated water layer at the peatland surface decreased. Previous research has indicated that in sphagnum-dominated peatlands, like the one studied here, rates of methane oxidation are highest at or slightly below the water table. It is in these saturated but oxygenated locations that both methane and oxygen are available. Thus, a seasonal reduction in the thickness of the oxygenated water layer could restrict methane oxidation. The decrease in thickness of the oxygenated layer coincided with an increase in the rate of oxygen consumption during our oxygen injection experiments. The increase in oxygen consumption was not explained by temperature; we infer it was due to an increase in substrate availability for oxygen consuming reactions and

Making sense of ocean biota: how evolution and biodiversity of land organisms differ from that of the plankton.

Science.gov (United States)

Smetacek, Victor

2012-09-01

The oceans cover 70% of the planet's surface, and their planktonic inhabitants generate about half the global primary production, thereby playing a key role in modulating planetary climate via the carbon cycle. The ocean biota have been under scientific scrutiny for well over a century, and yet our understanding of the processes driving natural selection in the pelagic environment - the open water inhabited by drifting plankton and free-swimming nekton - is still quite vague. Because of the fundamental differences in the physical environment, pelagic ecosystems function differently from the familiar terrestrial ecosystems of which we are a part. Natural selection creates biodiversity but understanding how this quality control of random mutations operates in the oceans - which traits are selected for under what circumstances and by which environmental factors, whether bottom-up or top-down - is currently a major challenge. Rapid advances in genomics are providing information, particularly in the prokaryotic realm, pertaining not only to the biodiversity inventory but also functional groups. This essay is dedicated to the poorly understood tribes of planktonic protists (unicellular eukaryotes) that feed the ocean's animals and continue to run the elemental cycles of our planet. It is an attempt at developing a conceptually coherent framework to understand the course of evolution by natural selection in the plankton and contrast it with the better-known terrestrial realm. I argue that organism interactions, in particular co-evolution between predators and prey (the arms race), play a central role in driving evolution in the pelagic realm. Understanding the evolutionary forces shaping ocean biota is a prerequisite for harnessing plankton for human purposes and also for protecting the oceanic ecosystems currently under severe stress from anthropogenic pressures.

Deriving seasonal dynamics in ecosystem properties of semi-arid savanna grasslands from in situ-based hyperspectral reflectance

DEFF Research Database (Denmark)

Tagesson, Håkan Torbern; Fensholt, Rasmus; Huber, S.

2015-01-01

strongly affected by solar zenith angles and sensor viewing geometry, as were many combinations of visible wavelengths. This study provides analyses based upon novel multi-angular hyperspectral data for validation of Earth-observation-based properties of semi-arid ecosystems, as well as insights...... between normalised difference spectral indices (NDSIs) and the measured ecosystem properties. Finally, the effects of variable sun sensor viewing geometry on different NDSI wavelength combinations were analysed. The wavelengths with the strongest correlation to seasonal dynamics in ecosystem properties...

Microbial eukaryote plankton communities of high-mountain lakes from three continents exhibit strong biogeographic patterns.

Science.gov (United States)

Filker, Sabine; Sommaruga, Ruben; Vila, Irma; Stoeck, Thorsten

2016-05-01

Microbial eukaryotes hold a key role in aquatic ecosystem functioning. Yet, their diversity in freshwater lakes, particularly in high-mountain lakes, is relatively unknown compared with the marine environment. Low nutrient availability, low water temperature and high ultraviolet radiation make most high-mountain lakes extremely challenging habitats for life and require specific molecular and physiological adaptations. We therefore expected that these ecosystems support a plankton diversity that differs notably from other freshwater lakes. In addition, we hypothesized that the communities under study exhibit geographic structuring. Our rationale was that geographic dispersal of small-sized eukaryotes in high-mountain lakes over continental distances seems difficult. We analysed hypervariable V4 fragments of the SSU rRNA gene to compare the genetic microbial eukaryote diversity in high-mountain lakes located in the European Alps, the Chilean Altiplano and the Ethiopian Bale Mountains. Microbial eukaryotes were not globally distributed corroborating patterns found for bacteria, multicellular animals and plants. Instead, the plankton community composition emerged as a highly specific fingerprint of a geographic region even on higher taxonomic levels. The intraregional heterogeneity of the investigated lakes was mirrored in shifts in microbial eukaryote community structure, which, however, was much less pronounced compared with interregional beta-diversity. Statistical analyses revealed that on a regional scale, environmental factors are strong predictors for plankton community structures in high-mountain lakes. While on long-distance scales (>10 000 km), isolation by distance is the most plausible scenario, on intermediate scales (up to 6000 km), both contemporary environmental factors and historical contingencies interact to shift plankton community structures. © 2016 John Wiley & Sons Ltd.

Seasonal photosynthetic activity in evergreen conifer leaves monitored with spectral reflectance

Science.gov (United States)

Wong, C. Y.; Gamon, J. A.

2013-12-01

Boreal evergreen conifers must maintain photosynthetic systems in environments where temperatures vary greatly across seasons from high temperatures in the summer to freezing levels in the winter. This involves seasonal downregulation and photoprotection during periods of extreme temperatures. To better understand this downregulation, seasonal dynamics of photosynthesis of lodgepole (Pinus contorta D.) and ponderosa pine (Pinus ponderosa D.) were monitored in Edmonton, Canada over two years. Spectral reflectance at the leaf and stand scales was measured weekly and the Photochemical Reflectance Index (PRI), often used as a proxy for chlorophyll and carotenoid pigment levels and photosynthetic light-use efficiency (LUE), was used to track the seasonal dynamics of photosynthetic activity. Additional physiological measurements included leaf pigment content, chlorophyll fluorescence, and gas exchange. All the metrics indicate large seasonal changes in photosynthetic activity, with a sharp transition from winter downregulation to active photosynthesis in the spring and a more gradual fall transition into winter. The PRI was a good indicator of several other variables including seasonally changing photosynthetic activity, chlorophyll fluorescence, photosynthetic LUE, and pigment pool sizes. Over the two-year cycle, PRI was primarily driven by changes in constitutive (chlorophyll:carotenoid) pigment levels correlated with seasonal photosynthetic activity, with a much smaller variation caused by diurnal changes in xanthophyll cycle activity (conversion between violaxanthin & zeaxanthin). Leaf and canopy scale PRI measurements exhibited parallel responses during the winter-spring transition. Together, our findings indicate that evergreen conifers photosynthetic system possesses a remarkable degree of resilience in response to large temperature changes across seasons, and that optical remote sensing can be used to observe the seasonal effects on photosynthesis and

Time dependent enhanced resistance against antibiotics & metal salts by planktonic & biofilm form of Acinetobacter haemolyticus MMC 8 clinical isolate

Directory of Open Access Journals (Sweden)

Sharvari Vijaykumar Gaidhani

2014-01-01

Full Text Available Background & objectives: Available literature shows paucity of reports describing antibiotic and metal resistance profile of biofilm forming clinical isolates of Acinetobacter haemolyticus. The present study was undertaken to evaluate the antibiotic and metal resistance profile of Indian clinical isolate of A. haemolyticus MMC 8 isolated from human pus sample in planktonic and biofilm form. Methods: Antibiotic susceptibility and minimum inhibitory concentration were determined employing broth and agar dilution techniques. Biofilm formation was evaluated quantitatively by microtiter plate method and variation in complex architecture was determined by scanning electron microscopy. Minimum biofilm inhibiting concentration was checked by Calgary biofilm device. Results: Planktonic A. haemolyticus MMC 8 was sensitive to 14 antibiotics, AgNO 3 and HgC1 2 resistant to streptomycin and intermediately resistant to netilmycin and kanamycin. MMC 8 exhibited temporal variation in amount and structure of biofilm. There was 32 - 4000 and 4 - 256 fold increase in antibiotic and metal salt concentration, respectively to inhibit biofilm over a period of 72 h as against susceptible planktonic counterparts. Total viable count in the range of 10 5 -10 6 cfu / ml was observed on plating minimum biofilm inhibiting concentration on Muller-Hinton Agar plate without antimicrobial agents. Biofilm forming cells were several folds more resistant to antibiotics and metal salts in comparison to planktonic cells. Presence of unaffected residual cell population indicated presence of persister cells. Interpretation & conclusions: The results indicate that biofilm formation causes enhanced resistance against antibiotics and metal salts in otherwise susceptible planktonic A. haemolyticus MMC 8.

Influence of plankton community structure on the sinking velocity of marine aggregates

Science.gov (United States)

Bach, L. T.; Boxhammer, T.; Larsen, A.; Hildebrandt, N.; Schulz, K. G.; Riebesell, U.

2016-08-01

About 50 Gt of carbon is fixed photosynthetically by surface ocean phytoplankton communities every year. Part of this organic matter is reprocessed within the plankton community to form aggregates which eventually sink and export carbon into the deep ocean. The fraction of organic matter leaving the surface ocean is partly dependent on aggregate sinking velocity which accelerates with increasing aggregate size and density, where the latter is controlled by ballast load and aggregate porosity. In May 2011, we moored nine 25 m deep mesocosms in a Norwegian fjord to assess on a daily basis how plankton community structure affects material properties and sinking velocities of aggregates (Ø 80-400 µm) collected in the mesocosms' sediment traps. We noted that sinking velocity was not necessarily accelerated by opal ballast during diatom blooms, which could be due to relatively high porosity of these rather fresh aggregates. Furthermore, estimated aggregate porosity (Pestimated) decreased as the picoautotroph (0.2-2 µm) fraction of the phytoplankton biomass increased. Thus, picoautotroph-dominated communities may be indicative for food webs promoting a high degree of aggregate repackaging with potential for accelerated sinking. Blooms of the coccolithophore Emiliania huxleyi revealed that cell concentrations of 1500 cells/mL accelerate sinking by about 35-40%, which we estimate (by one-dimensional modeling) to elevate organic matter transfer efficiency through the mesopelagic from 14 to 24%. Our results indicate that sinking velocities are influenced by the complex interplay between the availability of ballast minerals and aggregate packaging; both of which are controlled by plankton community structure.

The annual planktonic protist community structure in an ice-free high Arctic fjord (Adventfjorden, West Spitsbergen)

Science.gov (United States)

Kubiszyn, A. M.; Wiktor, J. M.; Wiktor, J. M.; Griffiths, C.; Kristiansen, S.; Gabrielsen, T. M.

2017-05-01

We investigated the size and trophic structure of the annual planktonic protist community structure in the ice-free Adventfjorden in relation to environmental factors. Our high-resolution (weekly to monthly) study was conducted in 2012, when warm Atlantic water was advected into the fjord in winter and summer. We observed a distinct seasonality in the protist communities. The winter protist community was characterised by extremely low levels of protist abundance and biomass (primarily Dinophyceae, Ciliophora and Bacillariophyceae) in a homogenous water column. In the second half of April, the total protist abundance and biomass rapidly increased, thus initiating the spring bloom in a still well-mixed water column. The spring bloom was initially dominated by the prymnesiophyte Phaeocystis pouchetii and Bacillariophyceae (primarily from the genera Thalassiosira, Fragilariopsis and Chaetoceros) and was later strictly dominated by Phaeocystis colonies. When the bloom terminated in mid-June, the community shifted towards flagellates (Dinophyceae, Ciliophora, Cryptophyceae and nanoflagellates 3-7 μm in size) in a stratified, nutrient-depleted water column. Decreases in the light intensity decreased the protist abundance and biomass, and the fall community (Dinophyceae, Cryptophyceae and Bacillariophyceae) was followed by the winter community.

The impact of seasonal changes in stratification on the dynamics of internal waves in the Sea of Okhotsk

Directory of Open Access Journals (Sweden)

Oxana E. Kurkina

2017-11-01

Full Text Available The properties and dynamics of internal waves in the ocean crucially depend on the vertical structure of water masses. We present detailed analysis of the impact of spatial and seasonal variations in the density-driven stratification in the Sea of Okhotsk on the properties of the classic kinematic and nonlinear parameters of internal waves in this water body. The resulting maps of the phase speed of long internal waves and coefficients at various terms of the underlying Gardner’s equation make it possible to rapidly determine the main properties of internal solitary waves in the region and to choose an adequate set of parameters of the relevant numerical models. It is shown that the phase speed of long internal waves almost does not depend on the particular season. The coefficient at the quadratic term of the underlying evolution equation is predominantly negative in summer and winter and therefore internal solitons usually have negative polarity. Numerical simulations of the formation of internal solitons and solibores indicate that seasonal variations in the coefficient at the cubic term of Gardner’s equation lead to substantial variations in the shape of solibores.

Seasonal and ontogenetic changes of mycosporine-like amino acids in planktonic organisms from an alpine lake

Science.gov (United States)

Tartarotti, Barbara; Sommaruga, Ruben

2011-01-01

We studied the quantitative and qualitative mycosporine-like amino acid (MAA) composition in phytoplankton and the copepod Cyclops abyssorum tatricus from an alpine lake over a 15-month period. Up to eight MAAs were identified in the samples, with shinorine being predominant. The MAAs occurred year round and showed a strong seasonal pattern. Compared with ice-cover periods, concentrations during the summer were on average 3.6 and 3.0 times higher in phytoplankton and C. abyssorum tatricus, respectively. During the summer, the contents of MAAs in phytoplankton decreased with depth, suggesting their photoprotective role. Chlorophyll a-specific concentrations of MAAs in phytoplankton correlated significantly with the incident solar radiation and ultraviolet (UV) water transparency (r2 ≤ 0.36), however, the strongest relationship was found with water temperature (r2 = 0.67). In zooplankton, highest contents of MAAs were found in eggs, nauplii, and young copepodids, presumably providing a high level of photoprotection for progeny. Proportions of the dominant MAAs in the copepod showed seasonal and ontogenetic variations, which were consistent with relative changes in the predominant MAA, but not other abundant MAAs, in phytoplankton. Considering a time lag of approximately 1 month between the synthesis and subsequent accumulation of these compounds, MAA concentrations in late copepodid to adult life stages were significantly correlated to those in phytoplankton. Annual patterns in MAAs with high concentrations during periods of elevated environmental stress are consistent with the idea that these compounds play an important role in protecting aquatic organisms against UV damage. PMID:21258624

Ocean Acidification-Induced Restructuring of the Plankton Food Web Can Influence the Degradation of Sinking Particles

Directory of Open Access Journals (Sweden)

Paul Stange

2018-04-01

Full Text Available Ocean acidification (OA is expected to alter plankton community structure in the future ocean. This, in turn, could change the composition of sinking organic matter and the efficiency of the biological carbon pump. So far, most OA experiments involving entire plankton communities have been conducted in meso- to eutrophic environments. However, recent studies suggest that OA effects may be more pronounced during prolonged periods of nutrient limitation. In this study, we investigated how OA-induced changes in low-nutrient adapted plankton communities of the subtropical North Atlantic Ocean may affect particulate organic matter (POM standing stocks, POM fluxes, and POM stoichiometry. More specifically, we compared the elemental composition of POM suspended in the water column to the corresponding sinking material collected in sediment traps. Three weeks into the experiment, we simulated a natural upwelling event by adding nutrient-rich deep-water to all mesocosms, which induced a diatom-dominated phytoplankton bloom. Our results show that POM was more efficiently retained in the water column in the highest CO2 treatment levels (>800 μatm pCO2 subsequent to this bloom. We further observed significantly lower C:N and C:P ratios in post-bloom sedimented POM in the highest CO2 treatments, suggesting that degradation processes were less pronounced. This trend is most likely explained by differences in micro- and mesozooplankton abundance during the bloom and post-bloom phase. Overall, this study shows that OA can indirectly alter POM fluxes and stoichiometry in subtropical environments through changes in plankton community structure.

Seasonal dynamics of ichthyodiversity in a hill stream of the Darjeeling Himalaya, West Bengal, india

Directory of Open Access Journals (Sweden)

M.L. Acharjee

2014-12-01

Full Text Available The small torrential spring-fed hill-stream Relli in the Darjeeling Himalaya of West Bengal was studied from March 2007 to February 2009 to assess seasonal dynamics and diversity of fish populations.  The study revealed that the stream sustained 25 rheophilic cold water fish species from 15 genera and five families having ornamental, food and sport value.  Seven omnivorous species were abundantly found, and the array of juveniles and sub adults suggests this stream is used as a breeding and nursery ground for some species.  The stream harboured fish with unique modifications such as adhesive structures.  Analysis of monthly data indicate that abundance and diversity indices increased slightly during April–May and sharply during October–November, indicating significant seasonal variations with the low diversity observed during monsoon months reflecting environmental stresses.  Evenness was high in all sampling sites, and inversely related to the dominance index of ichthyofauna.  The density and diversity of fish assemblages along the gradient of the stream may be interrupted due to anthropogenic disturbances.  Our study provides baseline data which may be helpful for conservation and management of fish species, and in formulating fishery policy. 

Strong seasonality and interannual recurrence in marine myovirus communities.

Science.gov (United States)

Pagarete, A; Chow, C-E T; Johannessen, T; Fuhrman, J A; Thingstad, T F; Sandaa, R A

2013-10-01

The temporal community dynamics and persistence of different viral types in the marine environment are still mostly obscure. Polymorphism of the major capsid protein gene, g23, was used to investigate the community composition dynamics of T4-like myoviruses in a North Atlantic fjord for a period of 2 years. A total of 160 unique operational taxonomic units (OTUs) were identified by terminal restriction fragment length polymorphism (TRFLP) of the gene g23. Three major community profiles were identified (winter-spring, summer, and autumn), which resulted in a clear seasonal succession pattern. These seasonal transitions were recurrent over the 2 years and significantly correlated with progression of seawater temperature, Synechococcus abundance, and turbidity. The appearance of the autumn viral communities was concomitant with the occurrence of prominent Synechococcus blooms. As a whole, we found a highly dynamic T4-like viral community with strong seasonality and recurrence patterns. These communities were unexpectedly dominated by a group of persistently abundant viruses.

Genomes of planktonic Acidimicrobiales: widening horizons for marine Actinobacteria by metagenomics.

Science.gov (United States)

Mizuno, Carolina Megumi; Rodriguez-Valera, Francisco; Ghai, Rohit

2015-02-10

The genomes of four novel marine Actinobacteria have been assembled from large metagenomic data sets derived from the Mediterranean deep chlorophyll maximum (DCM). These are the first marine representatives belonging to the order Acidimicrobiales and only the second group of planktonic marine Actinobacteria to be described. Their streamlined genomes and photoheterotrophic lifestyle suggest that they are planktonic, free-living microbes. A novel rhodopsin clade, acidirhodopsins, related to freshwater actinorhodopsins, was found in these organisms. Their genomes suggest a capacity to assimilate C2 compounds, some using the glyoxylate bypass and others with the ethylmalonyl-coenzyme A (CoA) pathway. They are also able to derive energy from dimethylsulfopropionate (DMSP), sulfonate, and carbon monoxide oxidation, all commonly available in the marine habitat. These organisms appear to be prevalent in the deep photic zone at or around the DCM. The presence of sister clades to the marine Acidimicrobiales in freshwater aquatic habitats provides a new example of marine-freshwater transitions with potential evolutionary insights. Despite several studies showing the importance and abundance of planktonic Actinobacteria in the marine habitat, a representative genome was only recently described. In order to expand the genomic repertoire of marine Actinobacteria, we describe here the first Acidimicrobidae genomes of marine origin and provide insights about their ecology. They display metabolic versatility in the acquisition of carbon and appear capable of utilizing diverse sources of energy. One of the genomes harbors a new kind of rhodopsin related to the actinorhodopsin clade of freshwater origin that is widespread in the oceans. Our data also support their preference to inhabit the deep chlorophyll maximum and the deep photic zone. This work contributes to the perception of marine actinobacterial groups as important players in the marine environment with distinct and

Investigation of Seasonal and Latitudinal Effects on the Expression of Clock Genes in Drosophila

Science.gov (United States)

Hosseini, Seyede Sanaz; Nazarimehr, Fahimeh; Jafari, Sajad

The primary goal in this work is to develop a dynamical model capturing the influence of seasonal and latitudinal variations on the expression of Drosophila clock genes. To this end, we study a specific dynamical system with strange attractors that exhibit changes of Drosophila activity in a range of latitudes and across different seasons. Bifurcations of this system are analyzed to peruse the effect of season and latitude on the behavior of clock genes. Existing experimental data collected from the activity of Drosophila melanogaster corroborate the dynamical model.

Examination of a high resolution laser optical plankton counter and FlowCAM for measuring plankton concentration and size

Science.gov (United States)

Kydd, Jocelyn; Rajakaruna, Harshana; Briski, Elizabeta; Bailey, Sarah

2018-03-01

Many commercial ships will soon begin to use treatment systems to manage their ballast water and reduce the global transfer of harmful aquatic organisms and pathogens in accordance with upcoming International Maritime Organization regulations. As a result, rapid and accurate automated methods will be needed to monitoring compliance of ships' ballast water. We examined two automated particle counters for monitoring organisms ≥ 50 μm in minimum dimension: a High Resolution Laser Optical Plankton Counter (HR-LOPC), and a Flow Cytometer with digital imaging Microscope (FlowCAM), in comparison to traditional (manual) microscopy considering plankton concentration, size frequency distributions and particle size measurements. The automated tools tended to underestimate particle concentration compared to standard microscopy, but gave similar results in terms of relative abundance of individual taxa. For most taxa, particle size measurements generated by FlowCAM ABD (Area Based Diameter) were more similar to microscope measurements than were those by FlowCAM ESD (Equivalent Spherical Diameter), though there was a mismatch in size estimates for some organisms between the FlowCAM ABD and microscope due to orientation and complex morphology. When a single problematic taxon is very abundant, the resulting size frequency distribution curves can become skewed, as was observed with Asterionella in this study. In particular, special consideration is needed when utilizing automated tools to analyse samples containing colonial species. Re-analysis of the size frequency distributions with the removal of Asterionella from FlowCAM and microscope data resulted in more similar curves across methods with FlowCAM ABD having the best fit compared to the microscope, although microscope concentration estimates were still significantly higher than estimates from the other methods. The results of our study indicate that both automated tools can generate frequency distributions of particles

An integrated fish-plankton aquaculture system in brackish water.

Science.gov (United States)

Gilles, S; Fargier, L; Lazzaro, X; Baras, E; De Wilde, N; Drakidès, C; Amiel, C; Rispal, B; Blancheton, J-P

2013-02-01

Integrated Multi-Trophic Aquaculture takes advantage of the mutualism between some detritivorous fish and phytoplankton. The fish recycle nutrients by consuming live (and dead) algae and provide the inorganic carbon to fuel the growth of live algae. In the meanwhile, algae purify the water and generate the oxygen required by fishes. Such mechanism stabilizes the functioning of an artificially recycling ecosystem, as exemplified by combining the euryhaline tilapia Sarotherodon melanotheron heudelotii and the unicellular alga Chlorella sp. Feed addition in this ecosystem results in faster fish growth but also in an increase in phytoplankton biomass, which must be limited. In the prototype described here, the algal population control is exerted by herbivorous zooplankton growing in a separate pond connected in parallel to the fish-algae ecosystem. The zooplankton production is then consumed by tilapia, particularly by the fry and juveniles, when water is returned to the main circuit. Chlorella sp. and Brachionus plicatilis are two planktonic species that have spontaneously colonized the brackish water of the prototype, which was set-up in Senegal along the Atlantic Ocean shoreline. In our system, water was entirely recycled and only evaporation was compensated (1.5% volume/day). Sediment, which accumulated in the zooplankton pond, was the only trophic cul-de-sac. The system was temporarily destabilized following an accidental rotifer invasion in the main circuit. This caused Chlorella disappearance and replacement by opportunist algae, not consumed by Brachionus. Following the entire consumption of the Brachionus population by tilapias, Chlorella predominated again. Our artificial ecosystem combining S. m. heudelotii, Chlorella and B. plicatilis thus appeared to be resilient. This farming system was operated over one year with a fish productivity of 1.85 kg/m2 per year during the cold season (January to April).

Implementation of the zooplankton functional response in plankton models: State of the art, recent challenges and future directions

Science.gov (United States)

Morozov, Andrew; Poggiale, Jean-Christophe; Cordoleani, Flora

2012-09-01

The conventional way of describing grazing in plankton models is based on a zooplankton functional response framework, according to which the consumption rate is computed as the product of a certain function of food (the functional response) and the density/biomass of herbivorous zooplankton. A large amount of literature on experimental feeding reports the existence of a zooplankton functional response in microcosms and small mesocosms, which goes a long way towards explaining the popularity of this framework both in mean-field (e.g. NPZD models) and spatially resolved models. On the other hand, the complex foraging behaviour of zooplankton (feeding cycles) as well as spatial heterogeneity of food and grazer distributions (plankton patchiness) across time and space scales raise questions as to the existence of a functional response of herbivores in vivo. In the current review, we discuss limitations of the ‘classical’ zooplankton functional response and consider possible ways to amend this framework to cope with the complexity of real planktonic ecosystems. Our general conclusion is that although the functional response of herbivores often does not exist in real ecosystems (especially in the form observed in the laboratory), this framework can be rather useful in modelling - but it does need some amendment which can be made based on various techniques of model reduction. We also show that the shape of the functional response depends on the spatial resolution (‘frame’) of the model. We argue that incorporating foraging behaviour and spatial heterogeneity in plankton models would not necessarily require the use of individual based modelling - an approach which is now becoming dominant in the literature. Finally, we list concrete future directions and challenges and emphasize the importance of a closer collaboration between plankton biologists and modellers in order to make further progress towards better descriptions of zooplankton grazing.

Constraining Parameter Uncertainty in Simulations of Water and Heat Dynamics in Seasonally Frozen Soil Using Limited Observed Data

Directory of Open Access Journals (Sweden)

Mousong Wu

2016-02-01

Full Text Available Water and energy processes in frozen soils are important for better understanding hydrologic processes and water resources management in cold regions. To investigate the water and energy balance in seasonally frozen soils, CoupModel combined with the generalized likelihood uncertainty estimation (GLUE method was used. Simulation work on water and heat processes in frozen soil in northern China during the 2012/2013 winter was conducted. Ensemble simulations through the Monte Carlo sampling method were generated for uncertainty analysis. Behavioral simulations were selected based on combinations of multiple model performance index criteria with respect to simulated soil water and temperature at four depths (5 cm, 15 cm, 25 cm, and 35 cm. Posterior distributions for parameters related to soil hydraulic, radiation processes, and heat transport indicated that uncertainties in both input and model structures could influence model performance in modeling water and heat processes in seasonally frozen soils. Seasonal courses in water and energy partitioning were obvious during the winter. Within the day-cycle, soil evaporation/condensation and energy distributions were well captured and clarified as an important phenomenon in the dynamics of the energy balance system. The combination of the CoupModel simulations with the uncertainty-based calibration method provides a way of understanding the seasonal courses of hydrology and energy processes in cold regions with limited data. Additional measurements may be used to further reduce the uncertainty of regulating factors during the different stages of freezing–thawing.

A framework for improving a seasonal hydrological forecasting system using sensitivity analysis

Science.gov (United States)

Arnal, Louise; Pappenberger, Florian; Smith, Paul; Cloke, Hannah

2017-04-01

Seasonal streamflow forecasts are of great value for the socio-economic sector, for applications such as navigation, flood and drought mitigation and reservoir management for hydropower generation and water allocation to agriculture and drinking water. However, as we speak, the performance of dynamical seasonal hydrological forecasting systems (systems based on running seasonal meteorological forecasts through a hydrological model to produce seasonal hydrological forecasts) is still limited in space and time. In this context, the ESP (Ensemble Streamflow Prediction) remains an attractive forecasting method for seasonal streamflow forecasting as it relies on forcing a hydrological model (starting from the latest observed or simulated initial hydrological conditions) with historical meteorological observations. This makes it cheaper to run than a standard dynamical seasonal hydrological forecasting system, for which the seasonal meteorological forecasts will first have to be produced, while still producing skilful forecasts. There is thus the need to focus resources and time towards improvements in dynamical seasonal hydrological forecasting systems which will eventually lead to significant improvements in the skill of the streamflow forecasts generated. Sensitivity analyses are a powerful tool that can be used to disentangle the relative contributions of the two main sources of errors in seasonal streamflow forecasts, namely the initial hydrological conditions (IHC; e.g., soil moisture, snow cover, initial streamflow, among others) and the meteorological forcing (MF; i.e., seasonal meteorological forecasts of precipitation and temperature, input to the hydrological model). Sensitivity analyses are however most useful if they inform and change current operational practices. To this end, we propose a method to improve the design of a seasonal hydrological forecasting system. This method is based on sensitivity analyses, informing the forecasters as to which element of

Seasonal occurrence and abundance of caridean shrimp larvae at Helgoland, German Bight

Science.gov (United States)

Wehrtmann, Ingo S.

1989-03-01

Plankton samples were collected from January 1985 to January 1986 three times per week at Helgoland to study seasonal occurrence and abundance of caridean shrimp larvae. A total of eleven species were obtained. Ninety-one % of all larvae collected during the sample period belonged to Crangon crangon L. and Crangon allmanni Kinahan, 6% to Philocheras trispinosus Hailstone and 3% to the remaining eight species. Collections were generally dominated by C. crangon larvae. However, C. allmanni larvae were most abundant in June coinciding with hatching activities of the population near Helgoland. C. allmanni was observed to have the highest density of all species with approximately 8 larvae per m3. Larvae of Eualus occultus (Lebour), Eualus pusiolus (Kroyer), Hippolyte varians Leach and Athanas nitescens Leach were most likely released by populations inhabiting the rocky intertidal zone around Helgoland. The presence of Processa modica Williamson & Rochanaburanon and Processa nouveli holthuisi Al-Adhub & Williamson in the German Bight was verified by observations of a series of different developmental stages. Larvae of the rare species Caridion steveni Lebour were also recorded. The observed shrimp species were placed into three different groups with respect to their seasonal occurrence. Possible advantages of the timing of larval dispersal relative to predation and food availability are given. The results on seasonal occurrence and relative abundance are discussed in relation to environmental factors (temperature, salinity) as well as to the geographical distribution of the species.

High in vitro antimicrobial activity of β-peptoid-peptide hybrid oligomers against planktonic and biofilm cultures of Staphylococcus epidermidis

DEFF Research Database (Denmark)

Liu, Yang; Knapp, Kolja Michael; Yang, Liang

2013-01-01

antibiotic vancomycin. Susceptibility and time-kill assays were performed to investigate activity against planktonic cells, whilst confocal laser scanning microscopy was used to investigate the dynamics of the activity against cells within biofilms. All tested peptidomimetics were bactericidal against both...... exponentially growing and stationary-phase S. epidermidis cells with similar killing kinetics. At the minimum inhibitory concentration (MIC), all peptidomimetics inhibited biofilm formation, whilst peptidomimetics at concentrations above the MIC (80-160μg/mL) eradicated young (6-h-old) biofilms, whilst even...... higher concentrations were needed to eradicate mature (24-h-old) biofilms completely. Chiral and guanidinylated hybrids exhibited the fastest killing effects against slow-growing cells and had more favourable antibiofilm properties than analogues only containing lysine or lacking chirality in the β...

Sediment traps as a new tool for estimation of longevity of planktonic foraminifera

Digital Repository Service at National Institute of Oceanography (India)

Nigam, R.

Sediment trap technique provides time series data of sinking particles (faunal and sediment) from surface to bottom of the sea. Besides many other applications, data can also be used to estimate life span of planktonic foraminifera. Based on rearing...

Planktonic foraminifera from a quaternary deep sea core from the southern Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Naidu, P.D.; Rao, P.S.; Pattan, J.N.

An investigation on planktonic foraminifera and calcium carbonate content of a box core collected at a depth of 2556 m from the southern part of the Arabian sea indicates faunal changes depicting Quaternary climatic fluctuations. Based on the study...

The long way of planktonic Foraminifera from biostratigraphy to paleoceanography (Jean Baptiste Lamarck Medal Lecture)

Science.gov (United States)

Premoli Silva, Isabella

2014-05-01

The mid of the last century was a time of flourishing studies concerning the importance of planktonic foraminifera in precisely dating and correlating sedimentary successions after the publication of the first biostratigraphic schemes provided by the Suisse Group (i.e. Kugler, Bolli, Broennimann) from the Caribbean region and former Southern USSR (Subbotina). Soon after Bolli's Trinidad scheme was widespread, planktonic foraminiferal distribution from Upper Cretaceous to Miocene was investigated intensively for dating the Neogene stratotypes, whose identifications were mainly based on poorly age-diagnostic, facies-controlled macrofossils, and for calibrating Paleogene larger foraminiferal distributions. Since these early works planktonic foraminiferal biostratigraphy was continously ameliorated, extended in time from Early Cretaceous to Recent by several authors and from different settings and domains, reaching progressively the current higher resolution, now calibrated to calcareous nannofossil distributions. To be mentioned, the detailed biostratigraphic studies on the Gubbio section (central Italy) provided (1) the first carefull documentation of the mass extinction of Cretaceous planktonic foraminifera, the presence of tiny Cretaceous survivors, and the rapid recovery of Danian assemblages, and (2) the first calibration of the Upper Cretaceous to Eocene reversal polarity scale in which the K/Pg boundary was demonstrated to fall within the magnetic reversal C29r. A major step forward was the recovery, since 1968, of several thousand of cores from over 1000 holes drilled in all oceans by the DSDP, ODP and IODP projects. The recovery of deep-sea sediments from all latitudes opened a new research field, the paleoceanography. Based on the large knowledge acquired on modern organisms in the '60s, for the Paleogene and Cretaceous reconstructions we started from the assumption that these extinct organisms lived in the water column like their modern counterpart and were

Characterization and risk assessment of seasonal and weather dynamics in organic pollutant mixtures from discharge of a separate sewer system.

Science.gov (United States)

Beckers, Liza-Marie; Busch, Wibke; Krauss, Martin; Schulze, Tobias; Brack, Werner

2018-05-15

Sites of wastewater discharge are hotspots for pollution of freshwaters with organic micropollutants and are often associated with adverse effects to aquatic organisms. The assessment, monitoring and managment of these hotspots is challenged by variations in the pollutant mixture composition due to season, weather conditions and random spills. In this study, we unraveled temporal exposure patterns in organic micropollutant mixtures from wastewater discharge and analyzed respective acute and sublethal risks for aquatic organisms. Samples were taken from two components of a separate sewer system i) a wastewater treatment plant (WWTP) and ii) a rain sewer of a medium size town as well as from the receiving river in different seasons. Rain sewer samples were separately collected for rain and dry - weather conditions. We analyzed 149 compounds by liquid chromatography-tandem mass spectrometry (LC-MS/MS). By considering the pollution dynamics in the point sources, we reduced the complexity of pollutant mixtures by k-means clustering to a few emission groups representing temporal and weather-related pollution patterns. From these groups, we derived biological quality element (BQE) - specific risk patterns. In most cases, one main risk driving emission group and a few individual risk driving compounds were identified for each BQE. While acute risk for fish was quite low, algae were exposed to seasonally emitted herbicides (terbuthylazine, spiroxamine) and crustaceans to randomly spilled insecticides (diazinon, dimethoate). Sublethal risks for all BQE were strongly influenced by constantly emitted pollutants, above all, pharmaceuticals. Variability of risks in the river was mainly driven by water discharge of the river rather than by season or peak events. Overall, the studied WWTP represented the major pollution source with a specific emission of agricultural compounds. However, the investigated rain sewer showed to be a constant pollution source due to illicit connections

Dynamics of autotrophic marine planktonic thaumarchaeota in the East China Sea.

Directory of Open Access Journals (Sweden)

Anyi Hu

Full Text Available The ubiquitous and abundant distribution of ammonia-oxidizing Thaumarchaeota in marine environments is now well documented, and their crucial role in the global nitrogen cycle has been highlighted. However, the potential contribution of Thaumarchaeota in the carbon cycle remains poorly understood. Here we present for the first time a seasonal investigation on the shelf region (bathymetry≤200 m of the East China Sea (ECS involving analysis of both thaumarchaeal 16S rRNA and autotrophy-related genes (acetyl-CoA carboxylase gene, accA. Quantitative PCR results clearly showed a higher abundance of thaumarchaeal 16S and accA genes in late-autumn (November than summer (August, whereas the diversity and community structure of autotrophic Thaumarchaeota showed no statistically significant difference between different seasons as revealed by thaumarchaeal accA gene clone libraries. Phylogenetic analysis indicated that shallow ecotypes dominated the autotrophic Thaumarchaeota in the ECS shelf (86.3% of total sequences, while a novel non-marine thaumarchaeal accA lineage was identified in the Changjiang estuary in summer (when freshwater plumes become larger but not in autumn, implying that Changjiang freshwater discharge played a certain role in transporting terrestrial microorganisms to the ECS. Multivariate statistical analysis indicated that the biogeography of the autotrophic Thaumarchaeota in the shelf water of the ECS was influenced by complex hydrographic conditions. However, an in silico comparative analysis suggested that the diversity and abundance of the autotrophic Thaumarchaeota might be biased by the 'universal' thaumarchaeal accA gene primers Cren529F/Cren981R since this primer set is likely to miss some members within particular phylogenetic groups. Collectively, this study improved our understanding of the biogeographic patterns of the autotrophic Thaumarchaeota in temperate coastal waters, and suggested that new accA primers with

Dynamics of autotrophic marine planktonic thaumarchaeota in the East China Sea.

Science.gov (United States)

Hu, Anyi; Yang, Zao; Yu, Chang-Ping; Jiao, Nianzhi

2013-01-01

The ubiquitous and abundant distribution of ammonia-oxidizing Thaumarchaeota in marine environments is now well documented, and their crucial role in the global nitrogen cycle has been highlighted. However, the potential contribution of Thaumarchaeota in the carbon cycle remains poorly understood. Here we present for the first time a seasonal investigation on the shelf region (bathymetry≤200 m) of the East China Sea (ECS) involving analysis of both thaumarchaeal 16S rRNA and autotrophy-related genes (acetyl-CoA carboxylase gene, accA). Quantitative PCR results clearly showed a higher abundance of thaumarchaeal 16S and accA genes in late-autumn (November) than summer (August), whereas the diversity and community structure of autotrophic Thaumarchaeota showed no statistically significant difference between different seasons as revealed by thaumarchaeal accA gene clone libraries. Phylogenetic analysis indicated that shallow ecotypes dominated the autotrophic Thaumarchaeota in the ECS shelf (86.3% of total sequences), while a novel non-marine thaumarchaeal accA lineage was identified in the Changjiang estuary in summer (when freshwater plumes become larger) but not in autumn, implying that Changjiang freshwater discharge played a certain role in transporting terrestrial microorganisms to the ECS. Multivariate statistical analysis indicated that the biogeography of the autotrophic Thaumarchaeota in the shelf water of the ECS was influenced by complex hydrographic conditions. However, an in silico comparative analysis suggested that the diversity and abundance of the autotrophic Thaumarchaeota might be biased by the 'universal' thaumarchaeal accA gene primers Cren529F/Cren981R since this primer set is likely to miss some members within particular phylogenetic groups. Collectively, this study improved our understanding of the biogeographic patterns of the autotrophic Thaumarchaeota in temperate coastal waters, and suggested that new accA primers with improved coverage

Seasonal Pattern of Decomposition and N, P, and C Dynamics in Leaf litter in a Mongolian Oak Forest and a Korean Pine Plantation

Directory of Open Access Journals (Sweden)

Jaeeun Sohng

2014-10-01

Full Text Available Distinct seasons and diverse tree species characterize temperate deciduous forests in NE Asia, but large areas of deciduous forests have been converted to conifer plantations. This study was conducted to understand the effects of seasons and tree species on leaf litter decomposition in a temperate forest. Using the litterbag method, the decomposition rate and nitrogen, phosphorous, and carbon dynamics of Mongolian oak (Quercus mongolica, Korean pine (Pinus koraiensis, and their mixed leaf litter were compared for 24 months in a Mongolian oak stand, an adjacent Korean pine plantation, and a Mongolian oak—Korean pine mixed stand. The decomposition rates of all the leaf litter types followed a pattern of distinct seasonal changes: most leaf litter decomposition occurred during the summer. Tree species was less influential on the leaf litter decomposition. The decomposition rates among different leaf litter types within the same stand were not significantly different, indicating no mixed litter effect. The immobilization of leaf litter N and P lasted for 14 months. Mongolian oak leaf litter and Korean pine leaf litter showed different N and P contents and dynamics during the decomposition, and soil P2O5 was highest in the Korean pine plantation, suggesting effects of plantation on soil nutrient budget.

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

Energy Technology Data Exchange (ETDEWEB)

Yan, Qingyun [Environmental Microbiome Research Center and the School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou China; Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Stegen, James C. [Biological Sciences Division, Pacific Northwest National Laboratory, Richland WA USA; Yu, Yuhe [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Deng, Ye [CAS Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing China; Li, Xinghao [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Wu, Shu [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Dai, Lili [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Zhang, Xiang [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Li, Jinjin [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Wang, Chun [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Ni, Jiajia [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Li, Xuemei [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Hu, Hongjuan [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Xiao, Fanshu [Environmental Microbiome Research Center and the School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou China; Feng, Weisong [Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan China; Ning, Daliang [Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman OK USA; He, Zhili [Environmental Microbiome Research Center and the School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou China; Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman OK USA; Van Nostrand, Joy D. [Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman OK USA; Wu, Liyou [Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman OK USA; Zhou, Jizhong [Department of Microbiology and Plant Biology, Institute for Environmental Genomics, University of Oklahoma, Norman OK USA; State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing China; Earth Sciences Division, Lawrence Berkeley National Laboratory, Berkeley CA USA

2017-05-21

Uncovering which environmental factors have the greatest influence on community diversity patterns and how ecological processes govern community turnover are key questions related to understanding community assembly mechanisms. Although we have good understanding of plant and animal community assembly, the mechanisms regulating diversity patterns of aquatic bacterial communities in lake ecosystems remains poorly understood. Here we present nearly a decade-long time-series study of bacterioplankton communities from the eutrophic Lake Donghu (Wuhan, China) using 16S rRNA gene amplicon sequencing. We found strong repeatable seasonal patterns for the overall community, common (detected in more than 50% samples) and dominant bacterial taxa (relative abundance > 1%). Moreover, community composition tracked the seasonal temperature gradient, indicating that temperature is an important environmental factor controlling observed diversity patterns. Total phosphorus also contributed significantly to the seasonal shifts in bacterioplankton composition. However, any spatial pattern across the main lake areas was overwhelmed by temporal variability in this eutrophic lake system. Phylogenetic analysis further indicated that 75%-82% of community turnover was governed by homogeneous selection, suggesting that the bacterioplankton communities are mainly controlled by niche-based processes. However, dominant niches available within seasons might be occupied by similar combinations of bacterial taxa with modest dispersal rates throughout this lake system. This study gives us important insights into community assembly and seasonal turnover of lake bacterioplankton, it may be also useful to predict temporal patterns of other planktonic communities.

Seasonal and annual variation in Chilean hake Merluccius gayi spawning locations and egg size off central Chile

Science.gov (United States)

Landaeta, Mauricio F.; Castro, Leonardo R.

2012-01-01

Variability in Chilean hake reproductive tactics off central Chile was assessed by analyzing ichthyoplankton samples from nine oceanographic cruises (1996-2005) and through experimental trials with early life stages (eggs, yolk-sac larvae) during the main (austral spring) and secondary (late summer-early autumn) spawning seasons. Abundant eggs in the plankton (1300-2000 eggs per 10 m 2) and historical adult reproductive data showed the highest reproductive activity in austral spring, with large egg aggregations near shelf break (50-100 m depth). Large, recently spawned eggs (1.15-1.20 mm diameter) were advected nearshore by coastward subsurface flows in the spring upwelling season. Experimental trials indicated that recently hatched larvae (3.4-3.5 mm) consumed their yolk-sac (0.17-0.41 mm 3) in 3-4 days at 10-12 °C; plankton sampling indicated that larval hake remained at mid-depth (50-100 m) without showing daily vertical migrations until completing their caudal fin formation (∼15 mm). During the secondary reproductive peak, hake spawned nearshore, when smaller eggs (0.95-1.13 mm) and recently hatched larvae (2.2-2.6 mm notochord length) occurred in surface waters (0-10 m depth). Their relatively large yolk-sac volumes (0.57 ± 0.11 mm 3) provided endogenous nourishment for at least 5 days at 10 °C, according to experiments. In the field, preflexion larvae occurred mainly in the mixed layer (0-25 m) and started ontogenetic daily vertical migrations at 7 mm. A strong decline occurred after 2002 in the adult Chilean hake biomass (estimated by hydroacoustic surveys) and body size, coinciding with variations in spawning locations (more coastward in early spring 2004 and 2005) and decline in egg size. Thus, recent variations in Chilean hake reproductive tactics may reflect an indirect effect of declines in the parental population size.

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

DEFF Research Database (Denmark)

Frigaard, Niels-Ulrik; Martinez, Asuncion; Mincer, Tracy J

2006-01-01

Planktonic Bacteria, Archaea and Eukarya reside and compete in the ocean's photic zone under the pervasive influence of light. Bacteria in this environment were recently shown to contain photoproteins called proteorhodopsins, thought to contribute to cellular energy metabolism by catalysing light...... phylogenetic distribution of proteorhodopsins reflects their significant light-dependent fitness contributions, which drive the photoprotein's lateral acquisition and retention, but constrain its dispersal to the photic zone....

Effect of water irrigation volume on Capsicum frutescens growth and plankton abundance in aquaponics system

Science.gov (United States)

Andriani, Y.; Dhahiyat, Y.; Zahidah; Subhan, U.; Iskandar; Zidni, I.; Mawardiani, T.

2018-03-01

This study aimed to understand Capsicum frutescens growth and plankton abundance in aquaponics culture. A Completely Randomized Design (CRD) with six treatments in triplicates comprising of treatment A (positive control using organic liquid fertilizer), B (negative control without fertilizer), C (drip irrigation aquaponics with a water debit of 100 ml/day/plant), D (drip irrigation aquaponics with a water debit of 150 ml/day/plant), E (drip irrigation with a water debit of 200 ml/day/plant), and F (drip irrigation aquaponics with a water debit of 250 ml/day/plant) was applied. The water used in treatments C, D, E, and F contained comet fish feces as fertilizer. C. frutescens growth and plankton abundance were observed. Analysis was conducted using analysis of variance for plant productivity and descriptive analysis for plankton abundance and water quality. The results of this study showed that the highest plant growth was seen in plants receiving F treatment with 50 ml/day drip irrigation. However, no significant difference was found when compared to the positive control with organic artificial fertilizer. Eleven types of phytoplankton and six types of zooplankton were found, with Stanieria sp. as the most abundant phytoplankton and Brachionus sp. and Epistylis sp. as the most abundant zooplanktons.

Comparative assessment of antibiotic susceptibility of coagulase-negative staphylococci in biofilm versus planktonic culture as assessed by bacterial enumeration or rapid XTT colorimetry.

Science.gov (United States)

Cerca, Nuno; Martins, Silvia; Cerca, Filipe; Jefferson, Kimberly K; Pier, Gerald B; Oliveira, Rosário; Azeredo, Joana

2005-08-01

To quantitatively compare the antibiotic susceptibility of biofilms formed by the coagulase-negative staphylococci (CoNS) Staphylococcus epidermidis and Staphylococcus haemolyticus with the susceptibility of planktonic cultures. Several CoNS strains were grown planktonically or as biofilms to determine the effect of the mode of growth on the level of susceptibility to antibiotics with different mechanisms of action. The utility of a new, rapid colorimetric method that is based on the reduction of a tetrazolium salt (XTT) to measure cell viability was tested by comparison with standard bacterial enumeration techniques. A 6 h kinetic study was performed using dicloxacillin, cefazolin, vancomycin, tetracycline and rifampicin at the peak serum concentration of each antibiotic. In planktonic cells, inhibitors of cell wall synthesis were highly effective over a 3 h period. Biofilms were much less susceptible than planktonic cultures to all antibiotics tested, particularly inhibitors of cell wall synthesis. The susceptibility to inhibitors of protein and RNA synthesis was affected by the biofilm phenotype to a lesser degree. Standard bacterial enumeration techniques and the XTT method produced equivalent results both in biofilms and planktonic assays. This study provides a more accurate comparison between the antibiotic susceptibilities of planktonic versus biofilm populations, because the cell densities in the two populations were similar and because we measured the concentration required to inhibit bacterial metabolism rather than to eradicate the entire bacterial population. While the biofilm phenotype is highly resistant to antibiotics that target cell wall synthesis, it is fairly susceptible to antibiotics that target RNA and protein synthesis.

Co-existence of Anaerobic Ammonium Oxidation Bacteria and Denitrifying Anaerobic Methane Oxidation Bacteria in Sewage Sludge: Community Diversity and Seasonal Dynamics.

Science.gov (United States)

Xu, Sai; Lu, Wenjing; Mustafa, Muhammad Farooq; Caicedo, Luis Miguel; Guo, Hanwen; Fu, Xindi; Wang, Hongtao

2017-11-01

Anaerobic ammonium oxidation (ANAMMOX) and denitrifying anaerobic methane oxidation (DAMO) have been recently discovered as relevant processes in the carbon and nitrogen cycles of wastewater treatment plants. In this study, the seasonal dynamics of ANAMMOX and DAMO bacterial community structures and their abundance in sewage sludge collected from wastewater treatment plants were analysed. Results indicated that ANAMMOX and DAMO bacteria co-existed in sewage sludge in different seasons and their abundance was positively correlated (P bacteria in autumn and winter indicated that these seasons were the preferred time to favour the growth of ANAMMOX and DAMO bacteria. The community structure of ANNAMOX and DAMO bacteria could also shift with seasonal changes. The "Candidatus Brocadia" genus of ANAMMOX bacteria was mainly recovered in spring and summer, and an unknown cluster was primarily detected in autumn and winter. Similar patterns of seasonal variation in the community structure of DAMO bacteria were also observed. Group B was the dominant in spring and summer, whereas in autumn and winter, group A and group B presented almost the same proportion. The redundancy analysis revealed that pH and nitrate were the most significant factors affecting community structures of these two groups (P < 0.01). This study reported the diversity of ANAMMOX and DAMO in wastewater treatment plants that may be the basis for new nitrogen removal technologies.

Prevalence of Colacium vesiculosum (Colaciales: Euglenophyceae on planktonic crustaceans in a subtropical shallow lake of Argentina

Directory of Open Access Journals (Sweden)

Yolanda Zalocar

2011-09-01

Full Text Available Colacium vesiculosum (Euglenophyceae is an epibiont common on planktonic microcrustaceans of continental waters. The interaction between epibionts and substrate organisms is not very well known, particularly in subtropical environments of South America. In the present work, we analyzed the prevalence, density, biomass and attachment sites of C. vesiculosum on planktonic microcrustaceans from Paiva Lake, a subtropical lake of Argentina. With the aim to evaluate whether epibionts affect the filtering rates of Notodiaptomus spiniger, the dominant planktonic crustacean, we carried out bioassays using phytoplankton <53µm. Crustaceans were sampled using a PVC tube (1.2m long and 10cm in diameter, filtering 50L of water through a 53µm-mesh. Microcrustaceans were counted in Bogorov chambers under a stereoscopic microscope. The infested organisms were separated and observed with a photonic microscope to determine density and biovolume of epibionts, by analyzing their distribution on the exoskeleton. The prevalence of C. vesiculosum was higher in adult crustaceans than in their larvae and juveniles. The most infested group was that of calanoid copepods, related to their high density. The attachment sites on the exoskeleton were found to be the portions of the body which have a higher probability of encounter with epibionts during locomotion and feeding, i.e., antennae and thoracic legs in copepods, and thoracic legs and postabdomen in cladocerans. The similar values found in the filtering rate of infested and uninfested individuals of N. spiniger and the constant prevalence (<40% of epibiont algae, suggest that C. vesiculosum does not condition the life of planktonic crustaceans of Paiva Lake. Rev. Biol. Trop. 59 (3: 1295-1306. Epub 2011 September 01.

Genetic and environmental control of seasonal carbohydrate dynamics in trees of diverse Pinus sylvestris populations.

Science.gov (United States)

Oleksyn, J.; Zytkowiak, R.; Karolewski, P.; Reich, P. B.; Tjoelker, M. G.

2000-06-01

We explored environmental and genetic factors affecting seasonal dynamics of starch and soluble nonstructural carbohydrates in needle and twig cohorts and roots of Scots pine (Pinus sylvestris L.) trees of six populations originating between 49 degrees and 60 degrees N, and grown under common garden conditions in western Poland. Trees of each population were sampled once or twice per month over a 3-year period from age 15 to 17 years. Based on similarity in starch concentration patterns in needles, two distinct groups of populations were identified; one comprised northern populations from Sweden and Russia (59-60 degrees N), and another comprised central European populations from Latvia, Poland, Germany and France (49-56 degrees N). Needle starch concentrations of northern populations started to decline in late spring and reached minimum values earlier than those of central populations. For all populations, starch accumulation in spring started when minimum air temperature permanently exceeded 0 degrees C. Starch accumulation peaked before bud break and was highest in 1-year-old needles, averaging 9-13% of dry mass. Soluble carbohydrate concentrations were lowest in spring and summer and highest in autumn and winter. There were no differences among populations in seasonal pattern of soluble carbohydrate concentrations. Averaged across all populations, needle soluble carbohydrate concentrations increased from about 4% of needle dry mass in developing current-year needles, to about 9% in 1- and 2-year-old needles. Root carbohydrate concentration exhibited a bimodal pattern with peaks in spring and autumn. Northern populations had higher concentrations of fine-root starch in spring and autumn than central populations. Late-summer carbohydrate accumulation in roots started only after depletion of starch in needles and woody shoots. We conclude that Scots pine carbohydrate dynamics depend partially on inherited properties that are probably related to phenology of root

Differences in planktonic microbial communities associated with three types of macrophyte stands in a shallow lake.

Science.gov (United States)

Mentes, Anikó; Szabó, Attila; Somogyi, Boglárka; Vajna, Balázs; Tugyi, Nóra; Csitári, Bianka; Vörös, Lajos; Felföldi, Tamás

2018-02-01

Little is known about how various substances from living and decomposing aquatic macrophytes affect the horizontal patterns of planktonic bacterial communities. Study sites were located within Lake Kolon, which is a freshwater marsh and can be characterised by open-water sites and small ponds with different macrovegetation (Phragmites australis, Nymphea alba and Utricularia vulgaris). Our aim was to reveal the impact of these macrophytes on the composition of the planktonic microbial communities using comparative analysis of environmental parameters, microscopy and pyrosequencing data. Bacterial 16S rRNA gene sequences were dominated by members of phyla Proteobacteria (36%-72%), Bacteroidetes (12%-33%) and Actinobacteria (5%-26%), but in the anoxic sample the ratio of Chlorobi (54%) was also remarkable. In the phytoplankton community, Cryptomonas sp., Dinobryon divergens, Euglena acus and chrysoflagellates had the highest proportion. Despite the similarities in most of the measured environmental parameters, the inner ponds had different bacterial and algal communities, suggesting that the presence and quality of macrophytes directly and indirectly controlled the composition of microbial plankton. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Seasonal dynamics of the inorganic pollution in a Niger Delta River ...

African Journals Online (AJOL)

The level of inorganic anions of the Eleme River over the rainy and dry season periods was investigated. Results indicated that parameters like temperature, conductivity and total dissolved solids were higher during the dry than rainy seasons. Others like pH, phosphate, sulfate and dissolved oxygen had higher rainy than ...

Antibacterial activities of docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) against planktonic and biofilm growing Streptococcus mutans.

Science.gov (United States)

Sun, Mengjun; Dong, Jiachen; Xia, Yiru; Shu, Rong

2017-06-01

The aim of this study was to evaluate the potential antibacterial activities of docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) against planktonic and biofilm modes of Streptococcus mutans (S. mutans). The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) were determined. The effects on planktonic growth and biofilm metabolic activity were evaluated by growth curve determination and MTT assay, respectively. Then, colony forming unit (CFU) counting, scanning electron microscopy (SEM) and real-time PCR were performed to further investigate the actions of DHA and EPA on exponential phase-S. mutans. Confocal laser scanning microscopy (CLSM) was used to detect the influences on mature biofilms. The MICs of DHA and EPA against S. mutans were 100 μM and 50 μM, respectively; the MBC of both compounds was 100 μM. In the presence of 12.5 μM-100 μM DHA or EPA, the planktonic growth and biofilm metabolic activity were reduced in varying degrees. For exponential-phase S. mutans, the viable counts, the bacterial membranes and the biofilm-associated gene expression were damaged by 100 μM DHA or EPA treatment. For 1-day-old biofilms, the thickness was decreased and the proportion of membrane-damaged bacteria was increased in the presence of 100 μM DHA or EPA. These results indicated that, DHA and EPA possessed antibacterial activities against planktonic and biofilm growing S. mutans. Copyright © 2017 Elsevier Ltd. All rights reserved.

Early detection monitoring for larval dreissenid mussels: how much plankton sampling is enough?

Science.gov (United States)

Counihan, Timothy D; Bollens, Stephen M

2017-03-01

The development of quagga and zebra mussel (dreissenids) monitoring programs in the Pacific Northwest provides a unique opportunity to evaluate a regional invasive species detection effort early in its development. Recent studies suggest that the ecological and economic costs of a dreissenid infestation in the Pacific Northwest of the USA would be significant. Consequently, efforts are underway to monitor for the presence of dreissenids. However, assessments of whether these efforts provide for early detection are lacking. We use information collected from 2012 to 2014 to characterize the development of larval dreissenid monitoring programs in the states of Idaho, Montana, Oregon, and Washington in the context of introduction and establishment risk. We also estimate the effort needed for high-probability detection of rare planktonic taxa in four Columbia and Snake River reservoirs and assess whether the current level of effort provides for early detection. We found that the effort expended to monitor for dreissenid mussels increased substantially from 2012 to 2014, that efforts were distributed across risk categories ranging from high to very low, and that substantial gaps in our knowledge of both introduction and establishment risk exist. The estimated volume of filtered water required to fully census planktonic taxa or to provide high-probability detection of rare taxa was high for the four reservoirs examined. We conclude that the current level of effort expended does not provide for high-probability detection of larval dreissenids or other planktonic taxa when they are rare in these reservoirs. We discuss options to improve early detection capabilities.

Encounter success of free-ranging marine predator movements across a dynamic prey landscape.

Science.gov (United States)

Sims, David W; Witt, Matthew J; Richardson, Anthony J; Southall, Emily J; Metcalfe, Julian D

2006-05-22

Movements of wide-ranging top predators can now be studied effectively using satellite and archival telemetry. However, the motivations underlying movements remain difficult to determine because trajectories are seldom related to key biological gradients, such as changing prey distributions. Here, we use a dynamic prey landscape of zooplankton biomass in the north-east Atlantic Ocean to examine active habitat selection in the plankton-feeding basking shark Cetorhinus maximus. The relative success of shark searches across this landscape was examined by comparing prey biomass encountered by sharks with encounters by random-walk simulations of 'model' sharks. Movements of transmitter-tagged sharks monitored for 964 days (16754 km estimated minimum distance) were concentrated on the European continental shelf in areas characterized by high seasonal productivity and complex prey distributions. We show movements by adult and sub-adult sharks yielded consistently higher prey encounter rates than 90% of random-walk simulations. Behavioural patterns were consistent with basking sharks using search tactics structured across multiple scales to exploit the richest prey areas available in preferred habitats. Simple behavioural rules based on learned responses to previously encountered prey distributions may explain the high performances. This study highlights how dynamic prey landscapes enable active habitat selection in large predators to be investigated from a trophic perspective, an approach that may inform conservation by identifying critical habitat of vulnerable species.

Prospective role of indigenous Exiguobacterium profundum PT2 in arsenic biotransformation and biosorption by planktonic cultures and biofilms.

Science.gov (United States)

Saba; Andreasen, R; Li, Y; Rehman, Y; Ahmed, M; Meyer, R L; Sabri, A N

2018-02-01

The aim of this study was to analyse arsenic (As) transformation and biosorption by indigenous As-resistant bacteria both in planktonic and biofilm modes of growth. As-resistant bacteria were isolated from industrial waste water and strain PT2, and identified as Exiguobacterium profundum through 16S rRNA gene sequencing was selected for further study. As transformation and biosorption by E. profundumPT2 was determined by HPLC-ICP-MS analysis. Planktonic cultures reduced 3·73 mmol l -1 As 5+ into As 3+ from artificial waste water effluent after 48-h incubation. In case of biosorption, planktonic cultures and biofilms exhibited 25·2 and 29·4 mg g -1 biomass biosorption, respectively. As biosorption kinetics followed Freundlich isotherm and pseudo second-order model. Biofilm formation peaked after 3 days of incubation, and in the presence of As stress, biofilm formation was significantly affected in contrast to control (P biofilms with an increased demand of nutrients was revealed by minimum roughness and maximum surface to biovolume ratio measured through CLSM analysis. Indigenous As-resistant E. profundumPT2 was found capable of As transformation and biosorption both in the form of planktonic cultures and biofilms. Indigenous biofilm forming E. profundum PT2 revealing As biosorption and biotransformation potential is presented an eco-friendly and cost-effective source for As remediation that can be implemented for waste water treatment. © 2017 The Society for Applied Microbiology.

Phytoplankton dynamics in relation to seasonal variability and upwelling and relaxation patterns at the mouth of Ria de Aveiro (West Iberian Margin over a four-year period.

Directory of Open Access Journals (Sweden)