WorldWideScience

Sample records for science literature database

  1. Vision science literature of Nepal in the database "Web of Science".

    Science.gov (United States)

    Risal, S; Prasad, H N

    2012-01-01

    Vision Science is considered to be a quite developed discipline in Nepal, with much research currently in progress. Though the results of these endeavors are published in scientific journals, formal citation analyses have not been performed on works contributed by Nepalese vision scientists. To study Nepal's contribution to vision science literature in the database "Web of Science". The primary data source of this paper was Web of Science, a citation database of Thomas Reuters. All bibliometric analyses were performed with the help of Web of Science analysis service. In the current database of vision science literature, Nepalese authors contributed 112 publications to Web of Science, 95 of which were original articles. Pokharel GP had the highest number of citations among contributing authors of Nepal. Hennig A contributed the highest number of article as a first author. The Nepal Eye Hospital contributed the highest number of articles as an institution to the field of Vision Science. Currently, only two journals from Nepal including Journal of Nepal Medical Association (JAMA) are indexed in the Web of Science database (Sieving, 2012). To evaluate the total productivity of vision science literature from Nepal, total publication counts from national journals and articles indexed in other databases such as PubMed and Scopus must also be considered. © NEPjOPH.

  2. Searching for religion and mental health studies required health, social science, and grey literature databases.

    Science.gov (United States)

    Wright, Judy M; Cottrell, David J; Mir, Ghazala

    2014-07-01

    To determine the optimal databases to search for studies of faith-sensitive interventions for treating depression. We examined 23 health, social science, religious, and grey literature databases searched for an evidence synthesis. Databases were prioritized by yield of (1) search results, (2) potentially relevant references identified during screening, (3) included references contained in the synthesis, and (4) included references that were available in the database. We assessed the impact of databases beyond MEDLINE, EMBASE, and PsycINFO by their ability to supply studies identifying new themes and issues. We identified pragmatic workload factors that influence database selection. PsycINFO was the best performing database within all priority lists. ArabPsyNet, CINAHL, Dissertations and Theses, EMBASE, Global Health, Health Management Information Consortium, MEDLINE, PsycINFO, and Sociological Abstracts were essential for our searches to retrieve the included references. Citation tracking activities and the personal library of one of the research teams made significant contributions of unique, relevant references. Religion studies databases (Am Theo Lib Assoc, FRANCIS) did not provide unique, relevant references. Literature searches for reviews and evidence syntheses of religion and health studies should include social science, grey literature, non-Western databases, personal libraries, and citation tracking activities. Copyright © 2014 Elsevier Inc. All rights reserved.

  3. Longitudinal analysis of meta-analysis literatures in the database of ISI Web of Science.

    Science.gov (United States)

    Zhu, Changtai; Jiang, Ting; Cao, Hao; Sun, Wenguang; Chen, Zhong; Liu, Jinming

    2015-01-01

    The meta-analysis is regarded as an important evidence for making scientific decision. The database of ISI Web of Science collected a great number of high quality literatures including meta-analysis literatures. However, it is significant to understand the general characteristics of meta-analysis literatures to outline the perspective of meta-analysis. In this present study, we summarized and clarified some features on these literatures in the database of ISI Web of Science. We retrieved the meta-analysis literatures in the database of ISI Web of Science including SCI-E, SSCI, A&HCI, CPCI-S, CPCI-SSH, CCR-E, and IC. The annual growth rate, literature category, language, funding, index citation, agencies and countries/territories of the meta-analysis literatures were analyzed, respectively. A total of 95,719 records, which account for 0.38% (99% CI: 0.38%-0.39%) of all literatures, were found in the database. From 1997 to 2012, the annual growth rate of meta-analysis literatures was 18.18%. The literatures involved in many categories, languages, fundings, citations, publication agencies, and countries/territories. Interestingly, the index citation frequencies of the meta-analysis were significantly higher than that of other type literatures such as multi-centre study, randomize controlled trial, cohort study, case control study, and cases report (P<0.0001). The increasing numbers, intensively global influence and high citations revealed that the meta-analysis has been becoming more and more prominent in recent years. In future, in order to promote the validity of meta-analysis, the CONSORT and PRISMA standard should be continuously popularized in the field of evidence-based medicine.

  4. Europe PMC: a full-text literature database for the life sciences and platform for innovation.

    Science.gov (United States)

    2015-01-01

    This article describes recent developments of Europe PMC (http://europepmc.org), the leading database for life science literature. Formerly known as UKPMC, the service was rebranded in November 2012 as Europe PMC to reflect the scope of the funding agencies that support it. Several new developments have enriched Europe PMC considerably since then. Europe PMC now offers RESTful web services to access both articles and grants, powerful search tools such as citation-count sort order and data citation features, a service to add publications to your ORCID, a variety of export formats, and an External Links service that enables any related resource to be linked from Europe PMC content. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  5. Index of /data/diam_safety_literature [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Index of /data/diam_safety_literature Name Last modified Size Description Parent Di...rectory - 201003/ 19-Apr-2010 17:47 - LATEST/ 19-Apr-2010 17:47 - Index of /data/diam_safety_literature ...

  6. Nuclear Science References Database

    Science.gov (United States)

    Pritychenko, B.; Běták, E.; Singh, B.; Totans, J.

    2014-06-01

    The Nuclear Science References (NSR) database together with its associated Web interface, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 210,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr.

  7. Nuclear Science References Database

    Energy Technology Data Exchange (ETDEWEB)

    Pritychenko, B., E-mail: pritychenko@bnl.gov [National Nuclear Data Center, Brookhaven National Laboratory, Upton, NY 11973-5000 (United States); Běták, E. [Institute of Physics, Slovak Academy of Sciences, 84511 Bratislava (Slovakia); Singh, B. [Department of Physics and Astronomy, McMaster University, Hamilton, Ontario, Canada L8S 4M1 (Canada); Totans, J. [National Nuclear Data Center, Brookhaven National Laboratory, Upton, NY 11973-5000 (United States)

    2014-06-15

    The Nuclear Science References (NSR) database together with its associated Web interface, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 210,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center (http://www.nndc.bnl.gov/nsr) and the International Atomic Energy Agency (http://www-nds.iaea.org/nsr)

  8. Literature list concerning differentiation and activation of macrophage and pathways found in the literature - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us DMPD Literature list concerning differentiation and activation of macrophage and pathways found in the literature...rophage and pathways found in the literature DOI 10.18908/lsdba.nbdc00558-001 Description of data contents L...sis method The curator reads the literature, and converts the contents into a pathway in the CSML format by ...on and activation of macrophage and pathways found in the literature - DMPD | LSDB Archive ...

  9. Database Description - TMFunction | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available sidue (or mutant) in a protein. The experimental data are collected from the literature both by searching th...the sequence database, UniProt, structural database, PDB, and literature database

  10. Database Description - PSCDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available abase Description General information of database Database name PSCDB Alternative n...rial Science and Technology (AIST) Takayuki Amemiya E-mail: Database classification Structure Databases - Protein structure Database...554-D558. External Links: Original website information Database maintenance site Graduate School of Informat...available URL of Web services - Need for user registration Not available About This Database Database Descri...ption Download License Update History of This Database Site Policy | Contact Us Database Description - PSCDB | LSDB Archive ...

  11. Teaching science through literature

    Science.gov (United States)

    Barth, Daniel

    2007-12-01

    The hypothesis of this study was that a multidisciplinary, activity rich science curriculum based around science fiction literature, rather than a conventional text book would increase student engagement with the curriculum and improve student performance on standards-based test instruments. Science fiction literature was chosen upon the basis of previous educational research which indicated that science fiction literature was able to stimulate and maintain interest in science. The study was conducted on a middle school campus during the regular summer school session. Students were self-selected from the school's 6 th, 7th, and 8th grade populations. The students used the science fiction novel Maurice on the Moon as their only text. Lessons and activities closely followed the adventures of the characters in the book. The student's initial level of knowledge in Earth and space science was assessed by a pre test. After the four week program was concluded, the students took a post test made up of an identical set of questions. The test included 40 standards-based questions that were based upon concepts covered in the text of the novel and in the classroom lessons and activities. The test also included 10 general knowledge questions that were based upon Earth and space science standards that were not covered in the novel or the classroom lessons or activities. Student performance on the standards-based question set increased an average of 35% for all students in the study group. Every subgroup disaggregated by gender and ethnicity improved from 28-47%. There was no statistically significant change in the performance on the general knowledge question set for any subgroup. Student engagement with the material was assessed by three independent methods, including student self-reports, percentage of classroom work completed, and academic evaluation of student work by the instructor. These assessments of student engagement were correlated with changes in student performance

  12. Database Description - RED | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ase Description General information of database Database name RED Alternative name Rice Expression Database...enome Research Unit Shoshi Kikuchi E-mail : Database classification Plant databases - Rice Database classifi...cation Microarray, Gene Expression Organism Taxonomy Name: Oryza sativa Taxonomy ID: 4530 Database descripti... Article title: Rice Expression Database: the gateway to rice functional genomics...nt Science (2002) Dec 7 (12):563-564 External Links: Original website information Database maintenance site

  13. The Nuclear Science References Database

    CERN Document Server

    Pritychenko, B; Singh, B; Totans, J

    2013-01-01

    The Nuclear Science References (NSR) database together with its associated Web interface, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 210,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr and the International Atomic Energy Agency http://www-nds.iaea.org/nsr.

  14. Database Description - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available base Description General information of database Database name RPSD Alternative nam...e Rice Protein Structure Database DOI 10.18908/lsdba.nbdc00749-000 Creator Creator Name: Toshimasa Yamazaki ... Ibaraki 305-8602, Japan National Institute of Agrobiological Sciences Toshimasa Yamazaki E-mail : Databas...e classification Structure Databases - Protein structure Organism Taxonomy Name: Or...or name(s): Journal: External Links: Original website information Database maintenance site National Institu

  15. Drug interaction databases in medical literature

    DEFF Research Database (Denmark)

    Kongsholm, Gertrud Gansmo; Nielsen, Anna Katrine Toft; Damkier, Per

    2015-01-01

    PURPOSE: It is well documented that drug-drug interaction databases (DIDs) differ substantially with respect to classification of drug-drug interactions (DDIs). The aim of this study was to study online available transparency of ownership, funding, information, classifications, staff training...... and the three most commonly used subscription DIDs in the medical literature. The following parameters were assessed for each of the databases: Ownership, classification of interactions, primary information sources, and staff qualification. We compared the overall proportion of yes/no answers from open access...... rose to 22/60 and 30/36, respectively (p interaction" domain, proportions were 3/25 versus 11/15 available from the webpage (P = 0.0001) and 3/25 versus 15/15 (p

  16. 4. Science and Literature

    OpenAIRE

    Speller, John R. W.

    2013-01-01

    If Bourdieu came to the defence of writers and artists in his political interventions, and even claimed that the sociologist can be the greatest ally of those engaged in the creation and conservation of literary and artistic culture, his analyses have been more often criticised as reductive and destructive of cultural values. A particular bone of contention has been his insistence on the word ’science’, which especially jars when it is used to describe Bourdieu’s approach to literature, in Le...

  17. BioLit: integrating biological literature with databases.

    Science.gov (United States)

    Fink, J Lynn; Kushch, Sergey; Williams, Parker R; Bourne, Philip E

    2008-07-01

    BioLit is a web server which provides metadata describing the semantic content of all open access, peer-reviewed articles which describe research from the major life sciences literature archive, PubMed Central. Specifically, these metadata include database identifiers and ontology terms found within the full text of the article. BioLit delivers these metadata in the form of XML-based article files and as a custom web-based article viewer that provides context-specific functionality to the metadata. This resource aims to integrate the traditional scientific publication directly into existing biological databases, thus obviating the need for a user to search in multiple locations for information relating to a specific item of interest, for example published experimental results associated with a particular biological database entry. As an example of a possible use of BioLit, we also present an instance of the Protein Data Bank fully integrated with BioLit data. We expect that the community of life scientists in general will be the primary end-users of the web-based viewer, while biocurators will make use of the metadata-containing XML files and the BioLit database of article data. BioLit is available at http://biolit.ucsd.edu.

  18. Mapping the Chinese Science Citation Database

    CERN Document Server

    Leydesdorff, Loet

    2009-01-01

    Methods developed for mapping the journal structures contained in aggregated journal-journal citations in the Science Citation Index are applied to the Chinese Science Citation Database of the Chinese Academy of Sciences. This database covers 991 journals, of which only 37 had originally English titles. Using factor-analytical and graph-analytical techniques we show that this data is dually structured. The main structure is the intellectual organization of the journals in journal groups (as in the international SCI), but the university-based journals provide an institutional layer that orients this structure towards practical ends (e.g., agriculture). The Chinese Science Citation Database exhibits the characteristics of Mode 2 in the production of scientific knowledge more than its western counterparts. The contexts of application lead to correlation (interfactorial complexity) among the components.

  19. Database Description - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available base Description General information of database Database name RMOS Alternative nam...arch Unit Shoshi Kikuchi E-mail : Database classification Plant databases - Rice Microarray Data and other Gene Expression Database...s Organism Taxonomy Name: Oryza sativa Taxonomy ID: 4530 Database description The Ric...19&lang=en Whole data download - Referenced database Rice Expression Database (RED) Rice full-length cDNA Database... (KOME) Rice Genome Integrated Map Database (INE) Rice Mutant Panel Database (Tos17) Rice Genome Annotation Database

  20. Acupuncture in stroke rehabilitation Literature retrieval based on international databases

    National Research Council Canada - National Science Library

    Feng Sun Jinchun Wang Xia Wen

    2012-01-01

    To identify global research trends of acupuncture in stroke rehabilitation using a bibliometric analysis of the Web of Science and the Clinical Trials registry database (ClinicalTrials.gov). DATA RETRIEVAL...

  1. Database Description - GRIPDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us GRIPDB Database Description General information of database Database name GRIPDB Alternative... databases - Protein sequence motifs and active sites Organism Taxonomy Name: Homo Sapiens Taxonomy ID: 9606 Database descript...ailable Web services Not available URL of Web services - Need for user registration Available About This Database Database Descript...ion Download License Update History of This Database Site Policy | Contact Us Database Description - GRIPDB | LSDB Archive ...

  2. Database Description - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available base Description General information of database Database name SAHG Alternative nam...h: Contact address Chie Motono Tel : +81-3-3599-8067 E-mail : Database classification Structure Databases - ...e databases - Protein properties Organism Taxonomy Name: Homo sapiens Taxonomy ID: 9606 Database description... Links: Original website information Database maintenance site The Molecular Profiling Research Center for D...stration Not available About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Database Description - SAHG | LSDB Archive ...

  3. Science and English: A Rapprochement through Literature.

    Science.gov (United States)

    Fagan, Edward R.

    1965-01-01

    Three views of literature as a bond between science and English are presented. First, the view that the sciences are contributing to the restructuring of literary forms is illustrated by quotations from Nigel Dennis, Northrop Frye, Stephen Spender, Ken Kesey, and Claude Mauriac. Second, historical precedence for viewing literature as rapprochement…

  4. DATABASES DEVELOPED IN INDIA FOR BIOLOGICAL SCIENCES

    Directory of Open Access Journals (Sweden)

    Gitanjali Yadav

    2017-09-01

    databases have also helped in development of novel data mining methods, prediction strategies and data driven application software or web servers. In this article, we give an overview of biological databases developed in India and their impact on data driven research in biology. We also provide some suggestions for planning training programs in biological data science for making transitions to big data revolution in biology by combining advanced techniques like Deep Learning with biological big data.

  5. Database Description - GETDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available abase Description General information of database Database name GETDB Alternative n...ame Gal4 Enhancer Trap Insertion Database DOI 10.18908/lsdba.nbdc00236-000 Creator Creator Name: Shigeo Haya... Chuo-ku, Kobe 650-0047 Tel: +81-78-306-3185 FAX: +81-78-306-3183 E-mail: Database classification Expression... Invertebrate genome database Organism Taxonomy Name: Drosophila melanogaster Taxonomy ID: 7227 Database des...riginal website information Database maintenance site Drosophila Genetic Resource

  6. High Performance Database Management for Earth Sciences

    Science.gov (United States)

    Rishe, Naphtali; Barton, David; Urban, Frank; Chekmasov, Maxim; Martinez, Maria; Alvarez, Elms; Gutierrez, Martha; Pardo, Philippe

    1998-01-01

    The High Performance Database Research Center at Florida International University is completing the development of a highly parallel database system based on the semantic/object-oriented approach. This system provides exceptional usability and flexibility. It allows shorter application design and programming cycles and gives the user control via an intuitive information structure. It empowers the end-user to pose complex ad hoc decision support queries. Superior efficiency is provided through a high level of optimization, which is transparent to the user. Manifold reduction in storage size is allowed for many applications. This system allows for operability via internet browsers. The system will be used for the NASA Applications Center program to store remote sensing data, as well as for Earth Science applications.

  7. Wind-Wildlife Impacts Literature Database (WILD)(Fact Sheet)

    Energy Technology Data Exchange (ETDEWEB)

    2015-01-01

    The Wind-Wildlife Impacts Literature Database (WILD), developed and maintained by the National Wind Technology Center (NWTC) at the National Renewable Energy Laboratory (NREL), is comprised of over 1,000 citations pertaining to the effects of land-based wind, offshore wind, marine and hydrokinetic, power lines, and communication and television towers on wildlife.

  8. License - Trypanosomes Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available pliance with the terms and conditions of the license described below. The license s...List Contact us Trypanosomes Database License License to Use This Database Last updated : 2014/02/04 You may use this database in com

  9. Availability of renal literature in six bibliographic databases.

    Science.gov (United States)

    Shariff, Salimah Z; Sontrop, Jessica M; Iansavichus, Arthur V; Haynes, R Brian; Weir, Matthew A; Gandhi, Sonja; Cuerden, Meaghan S; Garg, Amit X

    2012-12-01

    BACKGROUND: When searching for renal literature, nephrologists must choose between several different bibliographic databases. We compared the availability of renal clinical studies in six major bibliographic databases. METHODS: We gathered 151 renal systematic reviews, which collectively contained 2195 unique citations referencing primary studies in the form of journal articles, meeting articles or meeting abstracts published between 1963 and 2008. We searched for each citation in three subscription-free bibliographic databases (PubMed, Google Scholar and Scirus) and three subscription-based databases (EMBASE, Ovid-MEDLINE and ISI Web of Knowledge). For the subscription-free databases, we determined which full-text journal articles were available free of charge via links to the article source. RESULTS: The proportion of journal articles contained within each of the six databases ranged from 96 to 97%; results were similar for meeting articles. Availability of meeting abstracts was poor, ranging from 0 to 37% (P ISI Web of Knowledge containing the largest proportion [37%, 95% confidence interval (95% CI) 32-43%]. Among the subscription-free databases, free access to full-text articles was highest in Google Scholar (38% free, 95% CI 36-41%), and was only marginally higher (39%) when all subscription-free databases were searched. After 2000, free access to full-text articles increased to 49%. CONCLUSIONS: Over 99% of renal clinical journal articles are available in at least one major bibliographic database. Subscription-free databases provide free full-text access to almost half of the articles published after the year 2000, which may be of particular interest to clinicians in settings with limited access to subscription-based resources.

  10. A Review of Forensic Science Management Literature.

    Science.gov (United States)

    Houck, M M; McAndrew, W P; Porter, M; Davies, B

    2015-01-01

    The science in forensic science has received increased scrutiny in recent years, but interest in how forensic science is managed is a relatively new line of research. This paper summarizes the literature in forensic science management generally from 2009 to 2013, with some recent additions, to provide an overview of the growth of topics, results, and improvements in the management of forensic services in the public and private sectors. This review covers only the last three years or so and a version of this paper was originally produced for the 2013 Interpol Forensic Science Managers Symposium and is available at interpol.int. Copyright © 2015 Central Police University.

  11. Database Description - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...onote Database Description General information of database Database name Metabolonote... for managing information on experimental methods (metadata) which is accompanied with the experimental data obtained from metabol...omics studies. This system aims to promote the publication and utilization of metabolo... design of the system contributes to accelarate publication of metabolomics data.

  12. Database Description - Arabidopsis Phenome Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Arabidopsis Phenome Database Database Description General information of database Database n... BioResource Center Hiroshi Masuya Database classification Plant databases - Arabidopsis thaliana Organism T...axonomy Name: Arabidopsis thaliana Taxonomy ID: 3702 Database description The Arabidopsis thaliana phenome i...heir effective application. We developed the new Arabidopsis Phenome Database integrating two novel database...seful materials for their experimental research. The other, the “Database of Curated Plant Phenome” focusing

  13. Database Description - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available pecific and subcellular-localized proteins from rice. Reference(s) Article title: Rice proteome database: a ... Sep;59(1):179-90. External Links: Article title: Rice proteomics: a step toward functional analysis of the ...ell Proteomics. 2003 Jan;2(1):2-10. External Links: Article title: Rice Proteome Database based on two-dimen...t Genomics. 2004 Jun;271(5):566-76. Epub 2004 Apr 7. External Links: Article title: Proteome analysis of ric...485-96. Epub 2003 Nov 21. External Links: Article title: Update and challenges on

  14. Update History of This Database - SKIP Stemcell Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us SKIP Stemcell Database Update History of This Database Date Update contents 2017/03/13 SKIP Stemcell Database... English archive site is opened. 2013/03/29 SKIP Stemcell Database ( https://www.skip.med.k...eio.ac.jp/SKIPSearch/top?lang=en ) is opened. About This Database Database Description Download License Update History of This Databa...se Site Policy | Contact Us Update History of This Database - SKIP Stemcell Database | LSDB Archive ...

  15. Update History of This Database - Arabidopsis Phenome Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Arabidopsis Phenome Database Update History of This Database Date Update contents 2017/02/27 Arabidopsis Phenome Data...base English archive site is opened. - Arabidopsis Phenome Database (http://jphenom...e.info/?page_id=95) is opened. About This Database Database Description Download License Update History of This Database... Site Policy | Contact Us Update History of This Database - Arabidopsis Phenome Database | LSDB Archive ...

  16. Database Description - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available itute of Agrobiological Sciences Name: Grant-in-Aid for Scientific Research (2001-2003) of the University of Tokyo Reference(s) Artic...le title: The complete sequence of the rice (Oryza sativ

  17. Database Description - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ary browsers. License CC BY-SA Detail Background and funding Name: Achievements of the Ministry of Educati...on, Culture, Sports, Science and Technology - Genome Network Project (GNP) Referenc

  18. Social Science Literature Concerning African American Men.

    Science.gov (United States)

    Gordon, Edmund T.; And Others

    1994-01-01

    Discusses the social science research literature on black males in the following four areas: demographic and statistical issues, psychosocial issues, political/economic issues, and educational issues. The article concludes that most black males are in more serious trouble than any other subpopulation in the United States, with the possible…

  19. License - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available lows: Rice Proteome Database © Setsuko Komatsu (National Institute of Crop Science, National Agriculture and...1-18 Kannondai Tsukuba, Ibaraki 305-8634, Japan National Institute of Crop Science, National Agriculture and

  20. Database Description - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available The Rice Full-Length cDNA Reference(s) Article title: Collection, mapping, and annotation of over 28,000 cDN...i Y, Yasunishi A. Journal: Science 2003 July 18; Vol.301 no.5631: pp.376-379 External Links: Article title:

  1. Database of Literature on Guided Imagery and Music and Related Topics

    DEFF Research Database (Denmark)

    Bonde, Lars Ole

    2015-01-01

    A March 2015 update of the largest international database on literature on Guided Imagery and Music and related topics.......A March 2015 update of the largest international database on literature on Guided Imagery and Music and related topics....

  2. Update History of This Database - Trypanosomes Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Trypanosomes Database Update History of This Database Date Update contents 2014/05/07 The co...ntact information is corrected. The features and manner of utilization of the database are corrected. 2014/02/04 Trypanosomes Databas...e English archive site is opened. 2011/04/04 Trypanosomes Database ( http://www.tan...paku.org/tdb/ ) is opened. About This Database Database Description Download Lice...nse Update History of This Database Site Policy | Contact Us Update History of This Database - Trypanosomes Database | LSDB Archive ...

  3. Database Description - RGP gmap2000 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Nori Kurata Creator Affiliation: National Institute of Agrobiological Sciences Cr...iation: National Institute of Agrobiological Sciences Creator Name: Takuji Sasaki* Creator Affiliation: National Institute of Agrobio...a, Ibaraki 305-8602, Japan National Institute of Agrobiological Sciences Takashi Matsumoto E-mail : Yuichi K...: Original website information Database maintenance site National Institute of Agrobiological Sciences URL o...logical Sciences Contact address 2-1-2 Kannondai, Tsukub

  4. Database Description - Open TG-GATEs Pathological Image Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Open TG-GATEs Pathological Image Database Database Description General information of database Database... name Open TG-GATEs Pathological Image Database Alternative name - DOI 10.18908/lsdba.nbdc00954-0...iomedical Innovation 7-6-8, Saito-asagi, Ibaraki-city, Osaka 567-0085, Japan TEL:81-72-641-9826 Email: Database... classification Toxicogenomics Database Organism Taxonomy Name: Rattus norvegi... Article title: Author name(s): Journal: External Links: Original website information Database

  5. Research progress in muscle-derived stem cells: Literature retrieval results based on international database.

    Science.gov (United States)

    Zhang, Li; Wang, Wei

    2012-04-05

    not in the ClinicalTrials.gov database. (b) We excluded clinical trials that dealt with stem cells other than MDSCs in the ClinicalTrials.gov database. (1) Type of literature; (2) annual publication output; (3) distribution according to journals; (4) distribution according to country; (5) distribution according to institution; (6) top cited authors over the last 10 years; (7) projects financially supported by the NIH; and (8) clinical trials registered. (1) In all, 802 studies on MDSCs appeared in the Web of Science from 2002 to 2011, almost half of which derived from American authors and institutes. The number of studies on MDSCs has gradually increased over the past 10 years. Most papers on MDSCs appeared in journals with a particular focus on cell biology research, such as Experimental Cell Research, Journal of Cell Science, and PLoS One. (2) Eight MDSC research projects have received over US$6 billion in funding from the NIH. The current project led by Dr. Johnny Huard of the University of Pittsburgh-"Muscle-Based Tissue Engineering to Improve Bone Healing"-is supported by the NIH. Dr. Huard has been the most productive and top-cited author in the field of gene therapy and adult stem cell research in the Web of Science over last 10 years. (3) On ClinicalTrials.gov, "Muscle Derived Cell Therapy for Bladder Exstrophy Epispadias Induced Incontinence" Phase 1 is registered and sponsored by Johns Hopkins University and has been led by Dr. John P. Gearhart since November 2009. From our analysis of the literature and research trends, we found that MDSCs may offer further benefits in regenerative medicine.

  6. Big data science: A literature review of nursing research exemplars.

    Science.gov (United States)

    Westra, Bonnie L; Sylvia, Martha; Weinfurter, Elizabeth F; Pruinelli, Lisiane; Park, Jung In; Dodd, Dianna; Keenan, Gail M; Senk, Patricia; Richesson, Rachel L; Baukner, Vicki; Cruz, Christopher; Gao, Grace; Whittenburg, Luann; Delaney, Connie W

    Big data and cutting-edge analytic methods in nursing research challenge nurse scientists to extend the data sources and analytic methods used for discovering and translating knowledge. The purpose of this study was to identify, analyze, and synthesize exemplars of big data nursing research applied to practice and disseminated in key nursing informatics, general biomedical informatics, and nursing research journals. A literature review of studies published between 2009 and 2015. There were 650 journal articles identified in 17 key nursing informatics, general biomedical informatics, and nursing research journals in the Web of Science database. After screening for inclusion and exclusion criteria, 17 studies published in 18 articles were identified as big data nursing research applied to practice. Nurses clearly are beginning to conduct big data research applied to practice. These studies represent multiple data sources and settings. Although numerous analytic methods were used, the fundamental issue remains to define the types of analyses consistent with big data analytic methods. There are needs to increase the visibility of big data and data science research conducted by nurse scientists, further examine the use of state of the science in data analytics, and continue to expand the availability and use of a variety of scientific, governmental, and industry data resources. A major implication of this literature review is whether nursing faculty and preparation of future scientists (PhD programs) are prepared for big data and data science. Copyright © 2016 Elsevier Inc. All rights reserved.

  7. Update History of This Database - Yeast Interacting Proteins Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Yeast Interacting Proteins Database Update History of This Database Date Update contents 201... Download License Update History of This Database Site Policy | Contact Us Update Histor

  8. Creating a literature database of low-calorie sweeteners and health studies: evidence mapping

    Directory of Open Access Journals (Sweden)

    Ding Ding Wang

    2016-01-01

    Full Text Available Abstract Background Evidence mapping is an emerging tool used to systematically identify, organize and summarize the quantity and focus of scientific evidence on a broad topic, but there are currently no methodological standards. Using the topic of low-calorie sweeteners (LCS and selected health outcomes, we describe the process of creating an evidence-map database and demonstrate several example descriptive analyses using this database. Methods The process of creating an evidence-map database is described in detail. The steps include: developing a comprehensive literature search strategy, establishing study eligibility criteria and a systematic study selection process, extracting data, developing outcome groups with input from expert stakeholders and tabulating data using descriptive analyses. The database was uploaded onto SRDR™ (Systematic Review Data Repository, an open public data repository. Results Our final LCS evidence-map database included 225 studies, of which 208 were interventional studies and 17 were cohort studies. An example bubble plot was produced to display the evidence-map data and visualize research gaps according to four parameters: comparison types, population baseline health status, outcome groups, and study sample size. This plot indicated a lack of studies assessing appetite and dietary intake related outcomes using LCS with a sugar intake comparison in people with diabetes. Conclusion Evidence mapping is an important tool for the contextualization of in-depth systematic reviews within broader literature and identifies gaps in the evidence base, which can be used to inform future research. An open evidence-map database has the potential to promote knowledge translation from nutrition science to policy.

  9. Whistleblowing: An integrative literature review of data-based studies involving nurses.

    Science.gov (United States)

    Jackson, Debra; Hickman, Louise D; Hutchinson, Marie; Andrew, Sharon; Smith, James; Potgieter, Ingrid; Cleary, Michelle; Peters, Kath

    2014-01-01

    Abstract Aim: To summarise and critique the research literature about whistleblowing and nurses. Whistleblowing is identified as a crucial issue in maintenance of healthcare standards and nurses are frequently involved in whistleblowing events. Despite the importance of this issue, to our knowledge an evaluation of this body of the data-based literature has not been undertaken. An integrative literature review approach was used to summarise and critique the research literature. A comprehensive search of five databases including Medline, CINAHL, PubMed and Health Science: Nursing/Academic Edition, and Google, were searched using terms including: 'Whistleblow*,' 'nurs*.' In addition, relevant journals were examined, as well as reference lists of retrieved papers. Papers published during the years 2007-2013 were selected for inclusion. Fifteen papers were identified, capturing data from nurses in seven countries. The findings in this review demonstrate a growing body of research for the nursing profession at large to engage and respond appropriately to issues involving suboptimal patient care or organisational wrongdoing. Nursing plays a key role in maintaining practice standards and in reporting care that is unacceptable although the repercussions to nurses who raise concerns are insupportable. Overall, whistleblowing and how it influences the individual, their family, work colleagues, nursing practice and policy overall, requires further national and international research attention.

  10. Database Description - Trypanosomes Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available esearch Program (2007-2011) promoted by the Ministry of Education, Culture, Sports, Science and Technology (...011) promoted by the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan. Project

  11. The LAILAPS search engine: relevance ranking in life science databases.

    Science.gov (United States)

    Lange, Matthias; Spies, Karl; Bargsten, Joachim; Haberhauer, Gregor; Klapperstück, Matthias; Leps, Michael; Weinel, Christian; Wünschiers, Röbbe; Weissbach, Mandy; Stein, Jens; Scholz, Uwe

    2010-01-15

    Search engines and retrieval systems are popular tools at a life science desktop. The manual inspection of hundreds of database entries, that reflect a life science concept or fact, is a time intensive daily work. Hereby, not the number of query results matters, but the relevance does. In this paper, we present the LAILAPS search engine for life science databases. The concept is to combine a novel feature model for relevance ranking, a machine learning approach to model user relevance profiles, ranking improvement by user feedback tracking and an intuitive and slim web user interface, that estimates relevance rank by tracking user interactions. Queries are formulated as simple keyword lists and will be expanded by synonyms. Supporting a flexible text index and a simple data import format, LAILAPS can easily be used both as search engine for comprehensive integrated life science databases and for small in-house project databases. With a set of features, extracted from each database hit in combination with user relevance preferences, a neural network predicts user specific relevance scores. Using expert knowledge as training data for a predefined neural network or using users own relevance training sets, a reliable relevance ranking of database hits has been implemented. In this paper, we present the LAILAPS system, the concepts, benchmarks and use cases. LAILAPS is public available for SWISSPROT data at http://lailaps.ipk-gatersleben.de.

  12. Children's learning of science through literature

    Science.gov (United States)

    O'Kelly, James B.

    interviewers as well as refinement of the interview protocol to allow for more production of divergent questions by children may reveal additional effects of literary genre on children's learning of science through literature.

  13. Large Science Databases – Are Cloud Services Ready for Them?

    Directory of Open Access Journals (Sweden)

    Ani Thakar

    2011-01-01

    Full Text Available We report on attempts to put an astronomical database – the Sloan Digital Sky Survey science archive – in the cloud. We find that it is very frustrating to impossible at this time to migrate a complex SQL Server database into current cloud service offerings such as Amazon (EC2 and Microsoft (SQL Azure. Certainly it is impossible to migrate a large database in excess of a TB, but even with (much smaller databases, the limitations of cloud services make it very difficult to migrate the data to the cloud without making changes to the schema and settings that would degrade performance and/or make the data unusable. Preliminary performance comparisons show a large performance discrepancy with the Amazon cloud version of the SDSS database. These difficulties suggest that much work and coordination needs to occur between cloud service providers and their potential clients before science databases – not just large ones but even smaller databases that make extensive use of advanced database features for performance and usability – can successfully and effectively be deployed in the cloud. We describe a powerful new computational instrument that we are developing in the interim – the Data-Scope – that will enable fast and efficient analysis of the largest (petabyte scale scientific datasets.

  14. Database Description - SKIP Stemcell Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available an Genes and Diseases Database classification Stemcell Article Organism Taxonomy Name: Homo sapiens Taxonomy...our and Welfare Reference(s) Article title: Author name(s): Journal: External Lin

  15. The Nuclear Science References (NSR) Database and Web Retrieval System

    CERN Document Server

    Pritychenko, B; Kellett, M A; Singh, B; Totans, J

    2011-01-01

    The Nuclear Science References (NSR) database, and associated Web inter- face, is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 200,000 articles since the beginning of nuclear science. The weekly-updated NSR database provides essential support for nuclear data evaluation, com- pilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr and the International Atomic Energy Agency http://www-nds.iaea.org/nsr.

  16. The Nuclear Science References (NSR) database and Web Retrieval System

    Science.gov (United States)

    Pritychenko, B.; Běták, E.; Kellett, M. A.; Singh, B.; Totans, J.

    2011-06-01

    The Nuclear Science References (NSR) database together with its associated Web interface is the world's only comprehensive source of easily accessible low- and intermediate-energy nuclear physics bibliographic information for more than 200,000 articles since the beginning of nuclear science. The weekly updated NSR database provides essential support for nuclear data evaluation, compilation and research activities. The principles of the database and Web application development and maintenance are described. Examples of nuclear structure, reaction and decay applications are specifically included. The complete NSR database is freely available at the websites of the National Nuclear Data Center http://www.nndc.bnl.gov/nsr and the International Atomic Energy Agency http://www-nds.iaea.org/nsr.

  17. Mapping Chinese Agricultural and Allied Sciences Journals Indexed in CAB Abstracts Database

    Directory of Open Access Journals (Sweden)

    Arundhati Kaushik

    2013-06-01

    Full Text Available CAB Abstracts published by CABI (Centre for Agriculture and Biosciences International is the premier database for agricultural and allied sciences literature. The purpose of this study is to determine the extent of index coverage in CAB Abstracts and to identify the core journals in the field of agricultural and allied sciences published in China. The study depicts the trend of Chinese agricultural and allied sciences journals, which is successfully proving a gateway of the agricultural research in China to merge into the main stream of the world.

  18. License - Gclust Server | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available icense. Standard License The Standard License for this database is the license specified in the Creative Commons Attribution...es, Graduate School of Arts and Sciences, The University of Tokyo licensed under CC Attribution-Share Alike ...2.1 Japan . The summary of the Creative Commons Attribution-Share Alike 2.1 Japan

  19. Blending Education and Polymer Science: Semi Automated Creation of a Thermodynamic Property Database.

    Science.gov (United States)

    Tchoua, Roselyne B; Qin, Jian; Audus, Debra J; Chard, Kyle; Foster, Ian T; de Pablo, Juan

    2016-09-13

    Structured databases of chemical and physical properties play a central role in the everyday research activities of scientists and engineers. In materials science, researchers and engineers turn to these databases to quickly query, compare, and aggregate various properties, thereby allowing for the development or application of new materials. The vast majority of these databases have been generated manually, through decades of labor-intensive harvesting of information from the literature; yet, while there are many examples of commonly used databases, a significant number of important properties remain locked within the tables, figures, and text of publications. The question addressed in our work is whether, and to what extent, the process of data collection can be automated. Students of the physical sciences and engineering are often confronted with the challenge of finding and applying property data from the literature, and a central aspect of their education is to develop the critical skills needed to identify such data and discern their meaning or validity. To address shortcomings associated with automated information extraction, while simultaneously preparing the next generation of scientists for their future endeavors, we developed a novel course-based approach in which students develop skills in polymer chemistry and physics and apply their knowledge by assisting with the semi-automated creation of a thermodynamic property database.

  20. Blending Education and Polymer Science: Semiautomated Creation of a Thermodynamic Property Database

    Energy Technology Data Exchange (ETDEWEB)

    Tchoua, Roselyne B.; Qin, Jian; Audus, Debra J.; Chard, Kyle; Foster, Ian T.; de Pablo, Juan

    2016-09-13

    Structured databases of chemical and physical properties play a central role in the everyday research activities of scientists and engineers. In materials science, researchers and engineers turn to these databases to quickly query, compare, and aggregate various properties, thereby allowing for the development or application of new materials. The vast majority of these databases have been generated manually, through decades of labor-intensive harvesting of information from the literature, yet while there are many examples of commonly used databases, a significant number of important properties remain locked within the tables, figures, and text of publications. The question addressed in our work is whether and to what extent the process of data collection can be automated. Students of the physical sciences and engineering are often confronted with the challenge of finding and applying property data from the literature, and a central aspect of their education is to develop the critical skills needed to identify such data and discern their meaning or validity. To address shortcomings associated with automated information extraction while simultaneously preparing the next generation of scientists for their future endeavors, we developed a novel course-based approach in which students develop skills in polymer chemistry and physics and apply their knowledge by assisting with the semiautomated creation of a thermodynamic property database.

  1. Database Description - ConfC | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available abase Description General information of database Database name ConfC Alternative name Database...amotsu Noguchi Tel: 042-495-8736 E-mail: Database classification Structure Database...s - Protein structure Structure Databases - Small molecules Structure Databases - Nucleic acid structure Database... services - Need for user registration - About This Database Database Description Download License Update History of This Database... Site Policy | Contact Us Database Description - ConfC | LSDB Archive ...

  2. Using Science Fiction To Teach Mainstream Literature.

    Science.gov (United States)

    Fife, Ernelle

    This paper illustrates several examples of visual science fiction use in teaching literary classics, and is based on the philosophy that students share a visual cultural literacy through movies and television, types of representation with which they are more familiar than with literary texts. It claims that visual science fiction can be utilized…

  3. Literature and information in vision care and vision science.

    Science.gov (United States)

    Goss, David A

    2008-11-01

    The explosion of information in vision care and vision science makes keeping up with the literature and information in the field challenging. This report examines the nature of literature and information in vision care and vision science. A variety of topics are discussed, including the general nature of scientific and clinical journals, journals in vision science and vision care, resources available for searches for literature and information, and issues involved in the evaluation of journals and other information sources. Aspects of the application of citation analysis to vision care and vision science are reviewed, and a new citation analysis of a leading textbook in vision care (Borish's Clinical Refraction) is presented. This report is directed toward anyone who wants to be more informed about the literature of vision care and vision science, whether they are students, clinicians, educators, or librarians.

  4. Literature searching for social science systematic reviews: consideration of a range of search techniques.

    Science.gov (United States)

    Papaioannou, Diana; Sutton, Anthea; Carroll, Christopher; Booth, Andrew; Wong, Ruth

    2010-06-01

    Literature for a systematic review on the student experience of e-learning is located across a range of subject areas including health, education, social science, library and information science. To assess the merits and shortcomings of using different search techniques in retrieval of evidence in the social science literature. A conventional subject search was undertaken as the principal method of identifying the literature for the review. Four supplementary search methods were used including citation searching, reference list checking, contact with experts and pearl growing. The conventional subject search identified 30 of 41 included references; retrieved from 10 different databases. References were missed by this method and a further 11 references were identified via citation searching, reference list checking and contact with experts. Pearl growing was suspended as the nominated pearls were dispersed across numerous databases, with no single database indexing more than four pearls. Searching within the social sciences literature requires careful consideration. Conventional subject searching identified the majority of references, but additional search techniques were essential and located further high quality references.

  5. Searching the veterinary literature: a comparison of the coverage of veterinary journals by nine bibliographic databases

    OpenAIRE

    Grindlay, Douglas J.C.; Brennan, Marnie L.; Dean, Rachel S.

    2016-01-01

    A thorough search of the literature to find the best evidence is central to the practice of evidence-based veterinary medicine. This requires knowing which databases to search to maximize journal coverage. The aim of the present study was to compare the coverage of active veterinary journals by nine bibliographic databases to inform future systematic reviews and other evidence-based searches. Coverage was assessed using lists of included journals produced by the database providers. For 121 ac...

  6. Representations of Science and Technology in Cordel Literature

    Directory of Open Access Journals (Sweden)

    Carla Almeida

    2016-09-01

    Full Text Available In Brazilian cultural manifestations, science is not usually pictured prominently. Still, one can find references to it in some of the most popular forms of communication. Cordel literature is one of them. In this article, we try to understand how the scientific world is inserted and represented in this literary genre. We did a discourse analysis based on a corpus of 50 Cordel booklets on topics related to science. We note that the booklets present, as a whole, an ambivalent image of science, extolling the scientific achievements and their authors in some cases, whereas, in others, showing a critical view of technological development. Our study suggests that the mixing of science and Cordel literature has the potential to bring together scientific and popular cultures. This could also promote a critical thinking in the public about the relationship between science and society. Therefore, Cordel literature may be an interesting tool for education and popularization of science.

  7. Database Description - Society Catalog | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Society Catalog Database Description General information of database Database name Society C...81-3-5214-8470 Email: Database classification Catalog Database description Society Catalog provides informat...out This Database Database Description Download License Update History of This Da...tabase Site Policy | Contact Us Database Description - Society Catalog | LSDB Archive ...

  8. A survey of computer science capstone course literature

    Science.gov (United States)

    Dugan, Robert F., Jr.

    2011-09-01

    In this article, we surveyed literature related to undergraduate computer science capstone courses. The survey was organized around course and project issues. Course issues included: course models, learning theories, course goals, course topics, student evaluation, and course evaluation. Project issues included: software process models, software process phases, project type, documentation, tools, groups, and instructor administration. We reflected on these issues and thecomputer science capstone course we have taught for seven years. The survey summarized, organized, and synthesized the literature to provide a referenced resource for computer science instructors and researchers interested in computer science capstone courses.

  9. Science through the looking glass of literature

    NARCIS (Netherlands)

    Saris, F.W.

    2005-01-01

    The scientific revolution brought about by Einstein, Lorentz, Bohr, Heisenberg and others has changed our society and our worldview, as is reflected also in literature, fiction as well as non-fiction. Of course we need textbooks to teach relativity, cosmology and quantum mechanics, but I think

  10. Research Methods for Comprehensive Science Literature Reviews

    Science.gov (United States)

    Brown, Barry N.

    2009-01-01

    Finding some information on most topics is easy. There are abundant sources of information readily available. However, completing a comprehensive literature review on a particular topic is often difficult, laborious, and time intensive; the project requires organization, persistence, and an understanding of the scholarly communication and…

  11. C-Rank: A Link-based Similarity Measure for Scientific Literature Databases

    CERN Document Server

    Yoon, Seok-Ho; Park, Sunju

    2011-01-01

    As the number of people who use scientific literature databases grows, the demand for literature retrieval services has been steadily increased. One of the most popular retrieval services is to find a set of papers similar to the paper under consideration, which requires a measure that computes similarities between papers. Scientific literature databases exhibit two interesting characteristics that are different from general databases. First, the papers cited by old papers are often not included in the database due to technical and economic reasons. Second, since a paper references the papers published before it, few papers cite recently-published papers. These two characteristics cause all existing similarity measures to fail in at least one of the following cases: (1) measuring the similarity between old, but similar papers, (2) measuring the similarity between recent, but similar papers, and (3) measuring the similarity between two similar papers: one old, the other recent. In this paper, we propose a new ...

  12. Database Description - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap98 Database Description General information of database Database name RGP gmap98 Alt...nomy ID: 4530 Database description According to the publication of our high-densi... available About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Database Description - RGP gmap98 | LSDB Archive ...

  13. Database Description - GenLibi | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us GenLibi Database Description General information of database Database name GenLibi Alternati...sculus Taxonomy ID: 10090 Taxonomy Name: Rattus norvegicus Taxonomy ID: 10116 Database description GenLibi (...bout This Database Database Description Download License Update History of This Database Site Policy | Contact Us Database Description - GenLibi | LSDB Archive ...

  14. The cyborg as a posthuman figure in science fiction literature

    OpenAIRE

    Aarsland, Mona Håland

    2015-01-01

    Master's thesis in Literacy studies This thesis explores how cyborg figures within science fiction literature represent the posthuman, and function to comment on a contemporary process of posthumanization of the human species. It is a study of species boundaries between human and cyborg characters in science fiction literature, and how these boundaries prove permeable. Through encountering androids in Philip K. Dick’s novel Do Androids Dream of Electric Sheep? (1968), humanoid robots in se...

  15. The cyborg as a posthuman figure in science fiction literature

    OpenAIRE

    Aarsland, Mona Håland

    2015-01-01

    This thesis explores how cyborg figures within science fiction literature represent the posthuman, and function to comment on a contemporary process of posthumanization of the human species. It is a study of species boundaries between human and cyborg characters in science fiction literature, and how these boundaries prove permeable. Through encountering androids in Philip K. Dick’s novel Do Androids Dream of Electric Sheep? (1968), humanoid robots in selected short stories from Isaac Asimov’...

  16. Database Description - Dicty_cDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Dicty_cDB Database Description General information of database Database name Dicty_cDB Alter...ssification Genomics Databases (non-vertebrate) - Unicellular eukaryotes genome databases Database descripti...user registration - About This Database Database Description Download License Upd...ate History of This Database Site Policy | Contact Us Database Description - Dicty_cDB | LSDB Archive ...

  17. Database Description - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us NBDC NikkajiRDF Database Description General information of database Database name NBDC Nikk...ddress Email: Database classification Chemical Database Database description NBDC NikkajiRDF is RDF data of ...Need for user registration Not available About This Database Database Description... Download License Update History of This Database Site Policy | Contact Us Database Description - NBDC NikkajiRDF | LSDB Archive ...

  18. Colil: a database and search service for citation contexts in the life sciences domain.

    Science.gov (United States)

    Fujiwara, Toyofumi; Yamamoto, Yasunori

    2015-01-01

    To promote research activities in a particular research area, it is important to efficiently identify current research trends, advances, and issues in that area. Although review papers in the research area can suffice for this purpose in general, researchers are not necessarily able to obtain these papers from research aspects of their interests at the time they are required. Therefore, the utilization of the citation contexts of papers in a research area has been considered as another approach. However, there are few search services to retrieve citation contexts in the life sciences domain; furthermore, efficiently obtaining citation contexts is becoming difficult due to the large volume and rapid growth of life sciences papers. Here, we introduce the Colil (Comments on Literature in Literature) database to store citation contexts in the life sciences domain. By using the Resource Description Framework (RDF) and a newly compiled vocabulary, we built the Colil database and made it available through the SPARQL endpoint. In addition, we developed a web-based search service called Colil that searches for a cited paper in the Colil database and then returns a list of citation contexts for it along with papers relevant to it based on co-citations. The citation contexts in the Colil database were extracted from full-text papers of the PubMed Central Open Access Subset (PMC-OAS), which includes 545,147 papers indexed in PubMed. These papers are distributed across 3,171 journals and cite 5,136,741 unique papers that correspond to approximately 25 % of total PubMed entries. By utilizing Colil, researchers can easily refer to a set of citation contexts and relevant papers based on co-citations for a target paper. Colil helps researchers to comprehend life sciences papers in a research area more efficiently and makes their biological research more efficient.

  19. Disciplinary Literacy in the Science Classroom: Using Adaptive Primary Literature

    Science.gov (United States)

    Koomen, Michele Hollingsworth; Weaver, Sarah; Blair, Robert B.; Oberhauser, Karen S.

    2016-01-01

    This study reports on an innovative version of adaptive primary literature (APL) that we call Science Behind the Scenes used during a summer professional development (PD) program. Classroom teachers read and discussed papers from the primary literature, and created translations of these papers relevant to their own classroom needs. We randomly…

  20. Planetary Sciences Literature - Access and Discovery

    Science.gov (United States)

    Henneken, Edwin A.; ADS Team

    2017-10-01

    The NASA Astrophysics Data System (ADS) has been around for over 2 decades, helping professional astronomers and planetary scientists navigate, without charge, through the increasingly complex environment of scholarly publications. As boundaries between disciplines dissolve and expand, the ADS provides powerful tools to help researchers discover useful information efficiently. In its new form, code-named ADS Bumblebee (https://ui.adsabs.harvard.edu), it may very well answer questions you didn't know you had! While the classic ADS (http://ads.harvard.edu) focuses mostly on searching basic metadata (author, title and abstract), today's ADS is best described as a an "aggregator" of scholarly resources relevant to the needs of researchers in astronomy and planetary sciences, and providing a discovery environment on top of this. In addition to indexing content from a variety of publishers, data and software archives, the ADS enriches its records by text-mining and indexing the full-text articles (about 4.7 million in total, with 130,000 from planetary science journals), enriching its metadata through the extraction of citations and acknowledgments. Recent technology developments include a new Application Programming Interface (API), a new user interface featuring a variety of visualizations and bibliometric analysis, and integration with ORCID services to support paper claiming. The new ADS provides powerful tools to help you find review papers on a given subject, prolific authors working on a subject and who they are collaborating with (within and outside their group) and papers most read by by people who read recent papers on the topic of your interest. These are just a couple of examples of the capabilities of the new ADS. We currently index most journals covering the planetary sciences and we are striving to include those journals most frequently cited by planetary science publications. The ADS is operated by the Smithsonian Astrophysical Observatory under NASA

  1. Database Description - Taxonomy Icon | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Taxonomy Icon Database Description General information of database Database name Taxonomy Ic...-8666 Japan Tel : +81-3-5214-8491 Fax : +81-3-5214-8470 E-mail : Database classification Images Database descript... URL of Web services - Need for user registration Not available About This Database Database Description Dow...nload License Update History of This Database Site Policy | Contact Us Database Description - Taxonomy Icon | LSDB Archive ...

  2. Database Description - KAIKOcDNA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us KAIKOcDNA Database Description General information of database Database name KAIKOcDNA Alter...ssification Nucleotide Sequence Databases Organism Taxonomy Name: Bombyx mori Taxonomy ID: 7091 Database descript...is Database Database Description Download License Update History of This Database Site Policy | Contact Us Database Description - KAIKOcDNA | LSDB Archive ... ...available URL of Web services - Need for user registration Not available About Th

  3. MalarImDB: an open-access literature-based malaria immunology database.

    Science.gov (United States)

    Deroost, Katrien; Opdenakker, Ghislain; Van den Steen, Philippe E

    2014-06-01

    The Malaria Immunology Database (MalarImDB, www.malarimdb.org) is a novel literature-based database of host mediators in blood-stage malaria. We designed this open-access online tool because intensive malaria research has resulted in a dazzling complexity of host mediators with pathogenic or protective functions. MalarImDB allows comparisons between expression levels in humans, expression levels in murine models, and functional data from experimental treatments in mice. The database is equipped with multiple search engines to retrieve information from many published studies. The search output is visualized schematically in tables, thereby revealing similarities and disparities. Thus, the primary aim of this database is to present a clear overview of the currently available data about malaria and to simplify literature searches. Copyright © 2014 Elsevier Ltd. All rights reserved.

  4. The importance of social science literature as part of Grey Literature and the representation of social sciences in SIGLE

    OpenAIRE

    Kluck, M. (University of Potsdam); GreyNet, Grey Literature Network Service

    1994-01-01

    The importance of social science literature as a part of GL and the representation of social sciences in SIGLE. Since social sciences include not only the philosophical groundings but also the empirical analysis of various societal and individual problems they have become a discipline which not only produces discussions and some basic books and articles but also a lot of research and empirical findings: there is a wealth of re- search projects with private or public sponsors who want to get r...

  5. Database Description - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Open TG-GATEs Database Description General information of database Database name Open TG-GAT...onomy ID: 9606 Database description Toxicogenomics Project (TGP) is a government-private companies collabora... available URL of Web services - Need for user registration - About This Database Database Descript...ion Download License Update History of This Database Site Policy | Contact Us Database Description - Open TG-GATEs | LSDB Archive ...

  6. Database Description - AT Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us AT Atlas Database Description General information of database Database name AT Atlas Alterna.... coli, wheat, human, yeast et al. as organisms using protein biosynthesis. Database description AT Atlas wi...eb services - Need for user registration Not available About This Database Database Descript...ion Download License Update History of This Database Site Policy | Contact Us Database Description - AT Atlas | LSDB Archive ...

  7. Database Description - Gene Name Thesaurus | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Gene Name Thesaurus Database Description General information of database Database name Gene ...lus subtilis Taxonomy ID: 1423 Database description Gene names and gene family names were collected for 9 di...f Web services - Need for user registration - About This Database Database Description Download License Upda...te History of This Database Site Policy | Contact Us Database Description - Gene Name Thesaurus | LSDB Archive ...

  8. Income Elasticity Literature Review | Science Inventory | US ...

    Science.gov (United States)

    Following advice from the SAB Council, when estimating the economic value of reductions in air pollution-related mortality and morbidity risk, EPA accounts for the effect of personal income on the willingness to pay to reduce the risk of adverse health outcomes. These income growth adjustment factors are calculated using a combination of income elasticity estimates and income growth projections, both of which have remained essentially unchanged since 1999. These income elasticity estimates vary according to the severity of illness. EPA recently received advice from the SAB regarding the range of income elasticities to apply as well as the research standards to use when selecting income elasticity estimates. Following this advice, EPA consulted with a contractor to update its income elasticity and income growth projections, and generate new income growth adjustment factors. The SAB would evaluate the income elasticity estimates identified in the EPA-provided literature review, determining the extent to which these estimates are appropriate to use in human health benefits assessments.

  9. License - Arabidopsis Phenome Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Arabidopsis Phenome Database License License to Use This Database Last updated : 2017/02/27 You may use this database...cense specifies the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative ...Commons Attribution-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database...ative Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, you ar

  10. License - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us PLACE License License to Use This Database Last updated : 2014/07/17 You may use this database...ense terms regarding the use of this database and the requirements you must follow in using this database. The license for this datab...re Alike 2.1 Japan. If you use data from this database, please be sure attribute this database as follows: ... ...re . With regard to this database, you are licensed to: freely access part or whole of this database, and ac...quire data; freely redistribute part or whole of the data from this database; and freely create and distribute database

  11. Database Description - ChIP-Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us ChIP-Atlas Database Description General information of database Database name ChIP-Atlas Alt...ucleotide Sequence Databases - Transcriptional regulator sites and transcription ...axonomy ID: 6239 Taxonomy Name: Saccharomyces cerevisiae Taxonomy ID: 4932 Database description ChIP-Atlas i...ble URL of Web services - Need for user registration Not available About This Database Database Description ...Download License Update History of This Database Site Policy | Contact Us Database Description - ChIP-Atlas | LSDB Archive ...

  12. Database Description - AcEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available abase Description General information of database Database name AcEST Alternative n...hi, Tokyo-to 192-0397 Tel: +81-42-677-1111(ext.3654) E-mail: Database classificat...eneris Taxonomy ID: 13818 Database description This is a database of EST sequences of Adiantum capillus-vene...(3): 223-227. External Links: Original website information Database maintenance site Plant Environmental Res...base Database Description Download License Update History of This Database Site Policy | Contact Us Database Description - AcEST | LSDB Archive ...

  13. Analysis of scientific production archival science in brazil: a literature review

    Directory of Open Access Journals (Sweden)

    José Mauro Gouveia de Medeiros

    2016-12-01

    Full Text Available Introduction: review of the literature resulting from bibliographic survey about the scientific literature of archives in Brazil. Objective: to identify aspects of scientific literature of archival science, through bibliographical research, that aims to introduce the features of the archival science in Brazil. Methodology: Brazilian sites, databases and reference services were used as sources to identify 523 references. 15 texts were selected and analyzed with respect to authorship, affiliation, publication year, publication type, type and size of sources used, methodology, geographical range, results, among other aspects. Results: the scientific articles were the main object of study; the book was the most cited channel; the journal Arquivo & Administração and Encontro Nacional de Pesquisa em Ciência da Informação have importance on the national scene; Rio de Janeiro is the geographic region with greater production; There has been growth in the number of works since the 2007 and increased collaboration. Conclusions: the interest in Archival Science literature is increasing significantly; there was diversification of the publishing channels, mainly works of events and articles since 2013; the Archival Science is consolidating in Brazil with an increasing production, collaboration and interest in its scientific literature.

  14. Use of traditional motives in Serbian science-fiction literature

    Directory of Open Access Journals (Sweden)

    Đorđević Ivan

    2006-01-01

    Full Text Available Subject of this paper is consideration of use of traditional motives in Serbian science-fiction literature in relation with socio-cultural milieu of Serbia from late 80s until now. The author tries to point out ways of usage and construction of some traditional and mythological patterns in certain literature works. This genre of literary production is perceived as a popular culture phenomenon - with this premise, the paper intents to analyze communication process between text and audiences.

  15. Update History of This Database - Society Catalog | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Society Catalog Update History of This Database Date Update contents 2013/05/13 The original.... About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Society Catalog | LSDB Archive ...

  16. Update History of This Database - TMFunction | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us TMFunction Update History of This Database Date Update contents 2017/01/23 TMFunction Englis... Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - TMFunction | LSDB Archive ...

  17. Update History of This Database - Taxonomy Icon | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Taxonomy Icon Update History of This Database Date Update contents 2013/06/19 Taxonomy Icon ...About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Taxonomy Icon | LSDB Archive ...

  18. License - PSCDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us PSCDB License License to Use This Database Last updated : 2016/11/30 You may use this database...ense terms regarding the use of this database and the requirements you must follow in using this database. The license for this datab...re Alike 4.0 International . If you use data from this database, please be sure attribute this database as f... Alike 4.0 International is found here . With regard to this database, you are licensed to: freely access part or whole of this datab... of the data from this database; and freely create and distribute database and other adapted materials based

  19. License - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RPSD License License to Use This Database Last updated : 2014/11/10 You may use this database...nse terms regarding the use of this database and the requirements you must follow in using this database. The license for this databa...e Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: S...ke 2.1 Japan is found here . With regard to this database, you are licensed to: freely access part or whole of this database..., and acquire data; freely redistribute part or whole of the data from this database; and fr

  20. License - AT Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us AT Atlas License License to Use This Database Last updated : 2013/11/19 You may use this database...license terms regarding the use of this database and the requirements you must follow in using this database...Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follow...ase, you are licensed to: freely access part or whole of this database, and acquire... data; freely redistribute part or whole of the data from this database; and freely create and distribute database

  1. License - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RMG License License to Use This Database Last updated : 2013/08/07 You may use this database...se terms regarding the use of this database and the requirements you must follow in using this database. The license for this databas... Alike 2.1 Japan. If you use data from this database, please be sure attribute this database as follows: Ric...Japan is found here . With regard to this database, you are licensed to: freely access part or whole of this database..., and acquire data; freely redistribute part or whole of the data from this database; and freely create and distribute datab

  2. License - TP Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us TP Atlas License License to Use This Database Last updated : 2013/10/18 You may use this database...license terms regarding the use of this database and the requirements you must follow in using this database...Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follow...ase, you are licensed to: freely access part or whole of this database, and acquire... data; freely redistribute part or whole of the data from this database; and freely create and distribute database

  3. License - KEGG MEDICUS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us KEGG MEDICUS License License to Use This Database Last updated : 2014/04/03 You may use this database...the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribut...ion-NonCommercial-NoDerivs 2.1 Japan. If you use data from this database, please be sure attribute this database...NoDerivs 2.1 Japan is found here . With regard to this database, you are licensed to: freely access part or whole of this database

  4. License - RGP gmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap License License to Use This Database Last updated : 2014/10/31 You may use this database...license terms regarding the use of this database and the requirements you must follow in using this database...Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follow...ution-Share Alike 2.1 Japan is found here . With regard to this database, you are licensed to: freely access... part or whole of this database, and acquire data; freely redistribute part or whole of the data from this database

  5. License - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us KOME License License to Use This Database Last updated : 2013/07/30 You may use this database...nse terms regarding the use of this database and the requirements you must follow in using this database. The license for this databa...e Alike 2.1 Japan. If you use data from this database, please be sure attribute this database as follows: ... K...pan is found here . With regard to this database, you are licensed to: freely access part or whole of this database..., and acquire data; freely redistribute part or whole of the data from this database; and freely create and distribute databas

  6. License - Society Catalog | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Society Catalog License License to Use This Database Last updated : 2012/01/17 You may use this database...es the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attri...bution-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as...is found here . With regard to this database, you are licensed to: freely access part or whole of this database

  7. License - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RMOS License License to Use This Database Last updated : 2015/10/27 You may use this database...nse terms regarding the use of this database and the requirements you must follow in using this database. The license for this databa...e Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: R...pan is found here . With regard to this database, you are licensed to: freely access part or whole of this database..., and acquire data; freely redistribute part or whole of the data from this database; and freely create and distribute databas

  8. License - RGP caps | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP caps License License to Use This Database Last updated : 2015/05/12 You may use this database...license terms regarding the use of this database and the requirements you must follow in using this database...Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follow...ommons Attribution-Share Alike 2.1 Japan is found here . With regard to this database, you are licensed to: ...freely access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this database

  9. Array Databases: Agile Analytics (not just) for the Earth Sciences

    Science.gov (United States)

    Baumann, P.; Misev, D.

    2015-12-01

    Gridded data, such as images, image timeseries, and climate datacubes, today are managed separately from the metadata, and with different, restricted retrieval capabilities. While databases are good at metadata modelled in tables, XML hierarchies, or RDF graphs, they traditionally do not support multi-dimensional arrays.This gap is being closed by Array Databases, pioneered by the scalable rasdaman ("raster data manager") array engine. Its declarative query language, rasql, extends SQL with array operators which are optimized and parallelized on server side. Installations can easily be mashed up securely, thereby enabling large-scale location-transparent query processing in federations. Domain experts value the integration with their commonly used tools leading to a quick learning curve.Earth, Space, and Life sciences, but also Social sciences as well as business have massive amounts of data and complex analysis challenges that are answered by rasdaman. As of today, rasdaman is mature and in operational use on hundreds of Terabytes of timeseries datacubes, with transparent query distribution across more than 1,000 nodes. Additionally, its concepts have shaped international Big Data standards in the field, including the forthcoming array extension to ISO SQL, many of which are supported by both open-source and commercial systems meantime. In the geo field, rasdaman is reference implementation for the Open Geospatial Consortium (OGC) Big Data standard, WCS, now also under adoption by ISO. Further, rasdaman is in the final stage of OSGeo incubation.In this contribution we present array queries a la rasdaman, describe the architecture and novel optimization and parallelization techniques introduced in 2015, and put this in context of the intercontinental EarthServer initiative which utilizes rasdaman for enabling agile analytics on Petascale datacubes.

  10. Download - RED | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...t This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - RED | LSDB Archive ...

  11. License - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ut notice. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us License - SAHG | LSDB Archive ...

  12. Download - PSCDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...cess [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - PSCDB | LSDB Archive ...

  13. Download - FANTOM5 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - FANTOM5 | LSDB Archive ...

  14. Download - ASTRA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...is Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - ASTRA | LSDB Archive ...

  15. Download - GRIPDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...t This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - GRIPDB | LSDB Archive ...

  16. Download - TMFunction | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...out This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - TMFunction | LSDB Archive ...

  17. Download - RGP caps | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - RGP caps | LSDB Archive ...

  18. Update History of This Database - Gclust Server | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Gclust Server Update History of This Database Update History of This Database Date Update co...o.ac.jp/ ) is released. About This Database Database Description Download License Update History of This Dat...abase Site Policy | Contact Us Update History of This Database - Gclust Server | LSDB Archive ...

  19. Database Description - RED II INAHO | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RED II INAHO Database Description General information of database Database name RED II INAHO...es - Rice Database classification Microarray, Gene Expression Organism Taxonomy Name: Oryza sativa Taxonomy ID: 4530 Database descrip...) is a database that analyzed the gene expression of rice using a 60-mer oligonucleotide microarray to examine transcript...awa A, Otomo Y, Murakami K, Matsubara K, Kawai J, Carninci P, Hayashizaki Y, Kikuchi S. Transcriptional prof...ces - Need for user registration Not available About This Database Database Description Download License Upd

  20. Database Dump - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us fRNAdb Database Dump Data detail Data name Database Dump DOI 10.18908/lsdba.nbdc00452-002 De... data (tab separeted text) Data file File name: Database_Dump File URL: ftp://ftp....biosciencedbc.jp/archive/frnadb/LATEST/Database_Dump File size: 673 MB Simple search URL - Data acquisition...s. Data analysis method - Number of data entries 4 files - About This Database Database Description Download... License Update History of This Database Site Policy | Contact Us Database Dump - fRNAdb | LSDB Archive ...

  1. Database Description - Q-TARO | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Q-TARO Database Description General information of database Database name Q-TARO Alternative...abase classification Nucleotide Sequence Databases Organism Taxonomy Name: Oryza sa...ce(s) Article title: Q-TARO: QTL Annotation Rice Online Database Author name(s): ... September 2010, Volume 3, Issue 2-3, pp 194-203 External Links: Original website information Database maint...L of Web services - Need for user registration Not available About This Database Database Description Downlo

  2. [Analysis on acupuncture and moxibustion literature in Medline database from 2000 to 2007].

    Science.gov (United States)

    Deng, Hong-yong; Xu, Ji

    2009-02-01

    To summarize and analyze literature about acupuncture and moxibustion embodied in Medline Database from 2000 to 2007, the articles in Medline PubMed Database were retrieved by different retrieval tactics on line, in combination with artificial statistical analysis on the literature data. Results indicate that among a total of 4 041 articles about acupuncture and moxibustion retrieved from Medline in the 8 years, 628 were published in Chinese and 3071 in English. These articles were involved in 836 journals, including 31 Chinese Journals. Eight hundred and forty-one articles were from China mainland, Beijing (176), Shanghai (136) and Tianjin (43) were the top 3 provinces and cities of literature numbers. It is showed that most acupuncture and moxibustion articles embodied in Medline are published in many foreign publications in English as main, but this situation has greatly changed after Zhongguo Zhenjiu and other journals were cited by Medline since 2006.

  3. License - FANTOM5 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us FANTOM5 License License to Use This Database Last updated : 2017/03/14 You may use this database...icense terms regarding the use of this database and the requirements you must follow in using this database. The license for this dat....0 International . If you use data from this database, please be sure attribute this database as follows: FA...tion 4.0 International is found here . With regard to this database, you are lice...nsed to: freely access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this data

  4. License - TMFunction | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us TMFunction License License to Use This Database Last updated : 2017/01/23 You may use this database...e license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attributio...n-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database...ion-Share Alike 4.0 International is found here . With regard to this database, you are licensed to: freely

  5. License - SSBD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us SSBD License License to Use This Database Last updated : 2016/07/25 You may use this database...nse terms regarding the use of this database and the requirements you must follow in using this database. The license for this databa...e Alike 4.0 International . If you use data from this database, please be sure attribute this database as fo...tive Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, you are... licensed to: freely access part or whole of this database, and acquire data; freely redistribute part or wh

  6. License - GETDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us GETDB License License to Use This Database Last updated : 2010/02/17 You may use this database...ense terms regarding the use of this database and the requirements you must follow in using this database. The license for this datab...re Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: ...ry of the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database..., you are licensed to: freely access part or whole of this database, and acquire dat

  7. License - Taxonomy Icon | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Taxonomy Icon License License to Use This Database Last updated : 2013/3/21 You may use this database...the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribut...ion 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: Taxon...ative Commons Attribution 2.1 Japan is found here . With regard to this database,

  8. License - CREATE portal | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us CREATE portal License License to Use This Database Last updated : 2016/03/16 You may use this database... the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribu...tion-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database...hare Alike 4.0 International is found here . With regard to this database, you are licensed to: freely acces

  9. Israel's Information Retrieval Center for the Social Sciences: Database, Products, and Services.

    Science.gov (United States)

    Langerman, Shoshannah

    1986-01-01

    Describes a computerized database of social sciences research activities in Israel. The problems of constructing a database in a small country with special linguistic problems are covered, and the printed products and services offered are described. (Author/EM)

  10. Science Fiction Handbook, Revised: A Guide to Writing Imaginative Literature.

    Science.gov (United States)

    de Camp, L. Sprague; de Camp, Catherine C.

    This book provides the general reader with an introduction to the field of imaginative fiction. The first two chapters describe the growth of science fiction from Aristophanes to Asimov and give the history of its parent literature, fantasy. The rest of the book affords the apprentice writer an overview of skills necessary for creating imaginative…

  11. Incorporating Primary Literature in Undergraduate Crop Science Courses

    Science.gov (United States)

    Scott, Lori K.; Simmons, Steve R.

    2006-01-01

    Primary literature is an underutilized learning resource for undergraduate courses in crop science. Reading assignments from scientific journals were utilized in an undergraduate University of Minnesota crop physiology course at Southwest Minnesota State University from 2002 to 2004. The subjects of the articles corresponded to the lecture topics.…

  12. A Bibliometric Analysis of Certain Information Science Literature

    Science.gov (United States)

    Donohue, Joseph C.

    1972-01-01

    Several bibliometric techniques previously applied to separate scientific literatures were used together in the analysis of a single corpus of journal articles relating to information science. Techniques included were: Bradford Analysis, epidemic analysis, identification of research front, and bibliographic coupling. (16 references) (Author)

  13. A Survey of Computer Science Capstone Course Literature

    Science.gov (United States)

    Dugan, Robert F., Jr.

    2011-01-01

    In this article, we surveyed literature related to undergraduate computer science capstone courses. The survey was organized around course and project issues. Course issues included: course models, learning theories, course goals, course topics, student evaluation, and course evaluation. Project issues included: software process models, software…

  14. Alphabetical co-authorship in the social sciences and humanities: evidence from a comprehensive local database

    Energy Technology Data Exchange (ETDEWEB)

    Guns, R

    2016-07-01

    We present an analysis of alphabetical co-authorship in the social sciences and humanities (SSH), based on data from the VABB-SHW, a comprehensive database of SSH research output in Flanders (2000-2013). Using an unbiased estimator of the share of intentional alphabetical co-authorship (IAC), we find that alphabetical co-authorship is more engrained in SSH than in science as a whole. Within the SSH, large differences exist between disciplines. The highest proportions of IAC are found for Literature, Economics & business, and History. Furthermore, alphabetical co-authorship varies with publication type: it occurs most often in books, is less common in articles in journals or in books, and is rare in proceedings papers. The use of alphabetical co-authorship appears to be slowly declining. (Author)

  15. DPS Planetary Science Graduate Programs Database for Students and Advisors

    Science.gov (United States)

    Klassen, David R.; Roman, Anthony; Meinke, Bonnie K.

    2017-10-01

    Planetary science is a topic that covers an extremely diverse set of disciplines; planetary scientists are typically housed in a departments spanning a wide range of disciplines. As such it is difficult for undergraduate students to find programs that will give them a degree and research experience in our field as Department of Planetary Science is a rare sighting, indeed. Not only can this overwhelm even the most determined student, it can even be difficult for many undergraduate advisers.Because of this, the DPS Education committee decided several years ago that it should have an online resource that could help undergraduate students find graduate programs that could lead to a PhD with a focus in planetary science. It began in 2013 as a static page of information and evolved from there to a database-driven web site. Visitors can browse the entire list of programs or create a subset listing based on several filters. The site should be of use not only to undergraduates looking for programs, but also for advisers looking to help their students decide on their future plans. We present here a walk-through of the basic features as well as some usage statistics from the collected web site analytics. We ask for community feedback on additional features to make the system more usable for them. We also call upon those mentoring and advising undergraduates to use this resource, and for program admission chairs to continue to review their entry and provide us with the most up-to-date information.The URL for our site is http://dps.aas.org/education/graduate-schools.

  16. Update History of This Database - RED | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RED Update History of This Database Date Update contents 2015/12/21 Rice Expression Database English archi...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - RED | LSDB Archive ... ...ve site is opened. 2000/10/1 Rice Expression Database ( http://red.dna.affrc.go.jp/RED/ ) is opened. About Thi

  17. Update History of This Database - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RPD Update History of This Database Date Update contents 2016/02/02 Rice Proteome Database English archi...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - RPD | LSDB Archive ... ...ve site is opened. 2003/01/07 Rice Proteome Database ( http://gene64.dna.affrc.go.jp/RPD/ ) is opened. About Thi

  18. Database Description - ClEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available abase Description General information of database Database name ClEST Alternative n... Tsukuba, Ibaraki 305-8566 Japan Tel: +81-29-861-6812 (ext.222-36812) Fax: +81-29-861-6812 E-mail: Database ...classification Nucleotide Sequence Databases Organism Taxonomy Name: Cimex lectul...arius Taxonomy ID: 79782 Database description Expressed sequence tags (EST) database of unique organs and wh...2012 Aug; 47(3):233-243. External Links: Original website information Database maintenance site Symbiotic Ev

  19. Update History of This Database - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...onote Update History of This Database Date Update contents 2016/06/22 Metabolonote En...glish archive site is opened. 2012/12/28 Metabolonote ( http://webs2.kazusa.or.jp/metabolonote/ ) is opened.... About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Metabolonote | LSDB Archive ...

  20. Update History of This Database - SSBD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us SSBD Update History of This Database Date Update contents 2016/07/25 SSBD English archive si...tion Download License Update History of This Database Site Policy | Contact Us Update History of This Database - SSBD | LSDB Archive ... ...te is opened. 2013/09/03 SSBD ( http://ssbd.qbic.riken.jp/ ) is opened. About This Database Database Descrip

  1. Update History of This Database - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us SAHG Update History of This Database Date Update contents 2016/05/09 SAHG English archive si...te is opened. 2009/10 SAHG ( http://bird.cbrc.jp/sahg ) is opened. About This Database Database Description ...Download License Update History of This Database Site Policy | Contact Us Update History of This Database - SAHG | LSDB Archive ...

  2. Update History of This Database - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DMPD Update History of This Database Date Update contents 2010/03/29 DMPD English archive si....jp/macrophage/ ) is released. About This Database Database Description Download License Update History of Thi...s Database Site Policy | Contact Us Update History of This Database - DMPD | LSDB Archive ...

  3. Update History of This Database - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RMOS Update History of This Database Date Update contents 2015/10/27 RMOS English archive si...12 RMOS (http://cdna01.dna.affrc.go.jp/RMOS/) is opened. About This Database Database Description Download License Update Hi...story of This Database Site Policy | Contact Us Update History of This Database - RMOS | LSDB Archive ...

  4. Update History of This Database - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RGP gmap98 Update History of This Database Date Update contents 2015/02/12 RGP gmap98 Englis...ap98/geneticmap98.html) is opened. About This Database Database Description Download License Update Histor...y of This Database Site Policy | Contact Us Update History of This Database - RGP gmap98 | LSDB Archive ...

  5. Update History of This Database - Togo Picture Gallery | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Togo Picture Gallery Update History of This Database Date Update contents 2017/05/16 Togo Pi...cs.html ) is opened. About This Database Database Description Download License Update History of This Databa...se Site Policy | Contact Us Update History of This Database - Togo Picture Gallery | LSDB Archive ...

  6. Update History of This Database - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us PGDBj - Ortholog DB Update History of This Database Date Update contents 2017/03/07 PGDBj Or...log-db.html ) is opened. About This Database Database Description Download License Update Histor...y of This Database Site Policy | Contact Us Update History of This Database - PGDBj - Ortholog DB | LSDB Archive ...

  7. Update History of This Database - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us NBDC NikkajiRDF Update History of This Database Date Update contents 2017/02/17 Archive vers...iweb.jst.go.jp/ ) is opened. About This Database Database Description Download License Update Histor...y of This Database Site Policy | Contact Us Update History of This Database - NBDC NikkajiRDF | LSDB Archive ...

  8. Update History of This Database - RGP gmap2000 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RGP gmap2000 Update History of This Database Date Update contents 2015/03/10 RGP gmap2000 En...icmap2000/index.html) is opened. About This Database Database Description Download License Update Histor...y of This Database Site Policy | Contact Us Update History of This Database - RGP gmap2000 | LSDB Archive ...

  9. Update History of This Database - RGP estmap2001 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RGP estmap2001 Update History of This Database Date Update contents 2015/04/02 RGP estmap200...stmap2001/index.html) is opened. About This Database Database Description Download License Update Histor...y of This Database Site Policy | Contact Us Update History of This Database - RGP estmap2001 | LSDB Archive ...

  10. Update History of This Database - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Open TG-GATEs Update History of This Database Date Update contents 2015/10/01 URLs of the da...nload License Update History of This Database Site Policy | Contact Us Update History of This Database - Open TG-GATEs | LSDB Archive ... .../02/25 Open TG-GATEs( http://toxico.nibio.go.jp/ ) is released. About This Database Database Description Dow

  11. Update History of This Database - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RPSD Update History of This Database Date Update contents 2015/10/16 The original website is...005/02/14 Last update at RPSD (http://structure.rice.dna.affrc.go.jp/plant/index.html). About This Database Database... Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - RPSD | LSDB Archive ...

  12. Database Description - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 4751 Database description MicrobeDB.jp is an integrated database of several micr...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Mi...crobeDB.jp Database Description General information of database Database name MicrobeDB.jp...hiba Creator Affiliation: National Institute for Basic Biology Journal Search: Creator Name: Nozomi...me: Hiroyo Nishide Creator Affiliation: National Institute for Basic Biology Contact address 1111 Yata, Mish

  13. License - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us JSNP License License to Use This Database Last updated : 2016/02/01 You may use this database...nse terms regarding the use of this database and the requirements you must follow in using this database. The license for this databa...e Alike 4.0 International . If you use data from this database, please be sure attribute this database as fo...ution-Share Alike 4.0 International is found here . With regard to this database, you are licensed to: freel...y access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this database

  14. A Survey of Bioinformatics Database and Software Usage through Mining the Literature.

    Directory of Open Access Journals (Sweden)

    Geraint Duck

    Full Text Available Computer-based resources are central to much, if not most, biological and medical research. However, while there is an ever expanding choice of bioinformatics resources to use, described within the biomedical literature, little work to date has provided an evaluation of the full range of availability or levels of usage of database and software resources. Here we use text mining to process the PubMed Central full-text corpus, identifying mentions of databases or software within the scientific literature. We provide an audit of the resources contained within the biomedical literature, and a comparison of their relative usage, both over time and between the sub-disciplines of bioinformatics, biology and medicine. We find that trends in resource usage differs between these domains. The bioinformatics literature emphasises novel resource development, while database and software usage within biology and medicine is more stable and conservative. Many resources are only mentioned in the bioinformatics literature, with a relatively small number making it out into general biology, and fewer still into the medical literature. In addition, many resources are seeing a steady decline in their usage (e.g., BLAST, SWISS-PROT, though some are instead seeing rapid growth (e.g., the GO, R. We find a striking imbalance in resource usage with the top 5% of resource names (133 names accounting for 47% of total usage, and over 70% of resources extracted being only mentioned once each. While these results highlight the dynamic and creative nature of bioinformatics research they raise questions about software reuse, choice and the sharing of bioinformatics practice. Is it acceptable that so many resources are apparently never reused? Finally, our work is a step towards automated extraction of scientific method from text. We make the dataset generated by our study available under the CC0 license here: http://dx.doi.org/10.6084/m9.figshare.1281371.

  15. Update History of This Database - KAIKOcDNA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us KAIKOcDNA Update History of This Database Date Update contents 2014/10/20 The URL of the dat... database ( http://sgp.dna.affrc.go.jp/EST/ ) is opened. About This Database Database Description Download License Update Hi...story of This Database Site Policy | Contact Us Update History of This Database - KAIKOcDNA | LSDB Archive ... ...abase maintenance site is changed. 2014/10/08 KAIKOcDNA English archive site is opened. 2004/04/12 KAIKOcDNA

  16. Update History of This Database - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us PLACE Update History of This Database Date Update contents 2016/08/22 The contact address is...s Database Database Description Download License Update History of Thi...s Database Site Policy | Contact Us Update History of This Database - PLACE | LSDB Archive ... ... changed. 2014/10/20 The URLs of the database maintenance site and the portal site are changed. 2014/07/17 PLACE English archi

  17. GRIP Database original data - GRIPDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us GRIPDB GRIP Database original data Data detail Data name GRIP Database original data DOI 10....18908/lsdba.nbdc01665-006 Description of data contents GRIP Database original data It consists of data table...s and sequences. Data file File name: gripdb_original_data.zip File URL: ftp://ftp.biosciencedbc.jp/archive/gripdb/LATEST/gripdb_orig...e Database Description Download License Update History of This Database Site Policy | Contact Us GRIP Database original data - GRIPDB | LSDB Archive ... ...inal_data.zip File size: 779 KB Simple search URL - Data

  18. Literature circles book club for science and language arts

    Science.gov (United States)

    Bombard, Britain

    Students from an urban middle school participated in a Science Book Club for one semester using the literature circles format. These students voluntarily attended twice weekly lunch meetings, reading books that followed their Grade 7 science classes. Groups of three to six participants read the same text, each performing rotating jobs to improve group discussions during meetings. When a group completed a book, participants created a presentation to share what they learned with the other groups in the club and the researcher/teacher. This research measured gains in science content knowledge and language arts skills focusing on reading comprehension, and literary response and analysis. Gains were measured using pre-existing district benchmarks. An ANCOVA showed that while no gains were found in science content knowledge, there were gains in language arts in the areas of reading comprehension and literary response and analysis.

  19. Download - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...Database Description Download License Update History of This Database Site Policy | Contact Us Download - SAHG | LSDB Archive ...

  20. Download - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...atabase Database Description Download License Update History of This Database Site Policy | Contact Us Download - DMPD | LSDB Archive ...

  1. License - ASTRA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us ASTRA License License to Use This Database Last updated : 2015/11/25 You may use this database...ense terms regarding the use of this database and the requirements you must follow in using this database. The license for this datab...re Alike 4.0 International . If you use data from this database, please be sure attribute this database as f... Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, you are lic...ensed to: freely access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this dat

  2. License - RED | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RED License License to Use This Database Last updated : 2015/12/21 You may use this database...se terms regarding the use of this database and the requirements you must follow in using this database. The license for this databas... Alike 4.0 International . If you use data from this database, please be sure attribute this database as fol...mmons Attribution-Share Alike 4.0 International is found here . With regard to this database, you are licens...ed to: freely access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this databa

  3. License - GRIPDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us GRIPDB License License to Use This Database Last updated : 2017/07/19 You may use this database...cense terms regarding the use of this database and the requirements you must follow in using this database. The license for this data...are Alike 4.0 International . If you use data from this database, please be sure attribute this database as ... Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, you are lic...ensed to: freely access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this dat

  4. Update History of This Database - PSCDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us PSCDB Update History of This Database Date Update contents 2016/11/30 PSCDB English archive ...abase Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - PSCDB | LSDB Archive ... ...site is opened. 2011/11/13 PSCDB ( http://idp1.force.cs.is.nagoya-u.ac.jp/pscdb/ ) is opened. About This Dat

  5. Update History of This Database - GRIPDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us GRIPDB Update History of This Database Date Update contents 2017/07/19 GRIPDB English archiv...base Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - GRIPDB | LSDB Archive ... ...e site is opened. 2009/01/30 GRIPDB (http://grip.cbrc.jp/GDB/index.html) is opened. About This Database Data

  6. Searching the veterinary literature: a comparison of the coverage of veterinary journals by nine bibliographic databases.

    Science.gov (United States)

    Grindlay, Douglas J C; Brennan, Marnie L; Dean, Rachel S

    2012-01-01

    A thorough search of the literature to find the best evidence is central to the practice of evidence-based veterinary medicine. This requires knowing which databases to search to maximize journal coverage. The aim of the present study was to compare the coverage of active veterinary journals by nine bibliographic databases to inform future systematic reviews and other evidence-based searches. Coverage was assessed using lists of included journals produced by the database providers. For 121 active veterinary journals in the "Basic List of Veterinary Medical Serials, Third Edition," the percentage coverage was the highest for Scopus (98.3%) and CAB Abstracts (97.5%). For an extensive list of 1,139 journals with significant veterinary content compiled from a variety of sources, coverage was much greater in CAB Abstracts (90.2%) than in any other database, the next highest coverage being in Scopus (58.3%). The maximum coverage of the extensive journal list that could be obtained in a search without including CAB Abstracts was 69.8%. It was concluded that to maximize journal coverage and avoid missing potentially relevant evidence, CAB Abstracts should be included in any veterinary literature search.

  7. License - Plabrain DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Plabrain... Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: Plabrain...of this database (http://dbarchive.lifesciencedb.jp/english/en/plabrain-db/desc.html) in the article or pape...se Description Download License Update History of This Database Site Policy | Contact Us License - Plabrain DB | LSDB Archive ...

  8. Database Description - tRNADB-CE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available CC BY-SA Detail Background and funding Name: MEXT Integrated Database Project Reference(s) Article title: tR... 2009 Jan;37(Database issue):D163-8. External Links: Article title: tRNADB-CE 2011: tRNA gene database curat

  9. License - SKIP Stemcell Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available y use this database in compliance with the terms and conditions of the license described below. The license ...List Contact us SKIP Stemcell Database License License to Use This Database Last updated : 2017/03/13 You ma

  10. Update History of This Database - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us MicrobeDB.jp Update History of This Database Date Update contents 2017/06/29 Archive V2 is r...ion Download License Update History of This Database Site Policy | Contact Us Update History of This Database - MicrobeDB.jp | LSDB Archive ...

  11. Update History of This Database - RGP physicalmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RGP physicalmap Update History of This Database Date Update contents 2015/07/07 RGP physical...escription Download License Update History of This Database Site Policy | Contact Us Update History of This Database - RGP physicalmap | LSDB Archive ...

  12. Download - Plabrain DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Plabrain...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - Plabrain DB | LSDB Archive ...

  13. Locus - ASTRA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...URL: ftp://ftp.biosciencedbc.jp/archive/astra/LATEST/astra_locus.zip File size: 887 KB Simple search URL htt...icing type (ex. cassette) About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Locus - ASTRA | LSDB Archive ...

  14. Alignment - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...e URL: ftp://ftp.biosciencedbc.jp/archive/sahg/LATEST/sahg_alignment.zip File size: 12.0 MB Simple search UR...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Alignment - SAHG | LSDB Archive ...

  15. Exon - ASTRA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ontents Exons in variants Data file File name: astra_exon.zip File URL: ftp://ftp.biosciencedbc.jp/archive/a... About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Exon - ASTRA | LSDB Archive ...

  16. Reference - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ailable. Data file File name: place_reference.zip File URL: ftp://ftp.biosciencedbc.jp/archive/place/LATEST/...ber About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Reference - PLACE | LSDB Archive ...

  17. Flat Files - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... Data file File name: jsnp_flat_files File URL: ftp://ftp.biosciencedbc.jp/archiv...his Database Database Description Download License Update History of This Database Site Policy | Contact Us Flat Files - JSNP | LSDB Archive ...

  18. Download - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data .... If it is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - RPD | LSDB Archive ...

  19. Spot table - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...d_spot.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_spot.zip F... cDNA. (multiple entries) About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Spot table - RPD | LSDB Archive ...

  20. Main data - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ftp://ftp.biosciencedbc.jp/archive/rmg/LATEST/rmg_main.zip File size: 1 KB Simple search URL http://togodb.b... This Database Database Description Download License Update History of This Database Site Policy | Contact Us Main data - RMG | LSDB Archive ...

  1. Download - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data .... If it is, access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - JSNP | LSDB Archive ...

  2. License - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...ion-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database as follows: Metabol...ory of This Database Site Policy | Contact Us License - Metabolonote | LSDB Archive ...

  3. Complex Modeling - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available lex Modeling Data detail Data name Complex Modeling DOI 10.18908/lsdba.nbdc01193-00.... About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Complex Modeling - SAHG | LSDB Archive ... ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us SAHG Comp

  4. Enhancers - FANTOM5 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...d - Data analysis method CAGE Number of data entries 9 files - About This Database Database Description Download License Update Histo...ry of This Database Site Policy | Contact Us Enhancers - FANTOM5 | LSDB Archive ...

  5. ORF information - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kome_orf_infomation.zip File size: 526 KB Simple s...ut This Database Database Description Download License Update History of This Database Site Policy | Contact Us ORF information - KOME | LSDB Archive ...

  6. Database Description - Budding yeast cDNA sequencing project | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Budding yeast cDNA sequencing project Database Description General information of database D...ases Organism Taxonomy Name: Saccharomyces cerevisiae Taxonomy ID: 4932 Database description 5'-end sequence...nuine 5'-end, mapping the 5'-end sequence to the genome will lead to accurate identification of the transcript... title: A large-scale full-length cDNA analysis to explore the budding yeast transcriptome. Author name(s): ...rvices Not available URL of Web services - Need for user registration - About This Database Database Descript

  7. Database Description - RGP estmap2001 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP estmap2001 Database Description General information of database Database name RGP estmap...2001 Alternative name RGP : A YAC-Based Rice Transcript Map Containing 6591 EST Sites DOI 10.18908/lsdba.nbd...tiva Taxonomy ID: 4530 Database description This database provides the information about the YAC-based rice transcript...ents of the YAC-based rice transcript map with the following tables and figures (together Microsoft Excel fo...rticle title: A comprehensive rice transcript map containing 6591 expressed sequence tag sites. Author name(

  8. Update History of This Database - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us RMG Update History of This Database Date Update contents 2016/08/22 The contact address is c...dna.affrc.go.jp/ ) is opened. About This Database Database Description Download License Update Hi...story of This Database Site Policy | Contact Us Update History of This Database - RMG | LSDB Archive ... ... URL of the portal site is changed. 2013/08/07 RMG archive site is opened. 2002/09/25 RMG ( http://rmg.rice.

  9. Update History of This Database - GETDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us GETDB Update History of This Database Date Update contents 2014/05/09 URL of the portal site...GETDB/getdb.html ) is released. About This Database Database Description Download License Update History of Thi...s Database Site Policy | Contact Us Update History of This Database - GETDB | LSDB Archive ... ... is changed. 2010/03/29 GETDB English archive site is opened. 2003/8/1 GETDB( http://kyotofly.kit.jp/stocks/

  10. Update History of This Database - D-HaploDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us D-HaploDB Update History of This Database Date Update contents 2016/12/13 Description of the.../orca.gen.kyushu-u.ac.jp/) is released. About This Database Database Description Download License Update History of Thi...s Database Site Policy | Contact Us Update History of This Database - D-HaploDB | LSDB Archive ... ... original site is updated. 2011/09/22 D-HaploDB English archive site is opened. 2005/07/20 D-HaploDB (http:/

  11. Update History of This Database - AcEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us AcEST Update History of This Database Date Update contents 2013/01/10 Errors found on AcEST ...s Database Database Description Download License Update History of This Data...base Site Policy | Contact Us Update History of This Database - AcEST | LSDB Archive ... ...Conting data have been correceted. For details, please refer to the following page. Data correction 2010/03/29 AcEST English archi

  12. Update History of This Database - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us KOME Update History of This Database Date Update contents 2014/10/22 The URL of the whole da...s Database Database Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - KOME | LSDB Archive ... ... portal site are changed. 2013/12/17 The URL of the portal site is changed. 2013/07/30 KOME English archive ...site is opened. 2003/07/18 KOME ( http://cdna01.dna.affrc.go.jp/cDNA/ ) is opened. About Thi

  13. Update History of This Database - Dicty_cDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Dicty_cDB Update History of This Database Date Update contents 2015/01/09 The original websi...ase Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Dicty_cDB | LSDB Archive ... ...te information was updated. 2010/03/29 Dicty_cDB English archive site is opened. 2009/8 Data is updated. 199...6/12 Dicty_cDB(http://dictycdb.biol.tsukuba.ac.jp/cDNA/database.html) is released. About This Database Datab

  14. Update History of This Database - DGBY | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DGBY Update History of This Database Date Update contents 2014/10/20 The URL of the portal s...aro.affrc.go.jp/yakudachi/yeast/index.html ) is opened. About This Database Database Description Download License Update Hi...story of This Database Site Policy | Contact Us Update History of This Database - DGBY | LSDB Archive ... ... Expression of attribution in License is updated. 2012/03/08 DGBY English archive site is opened. 2006/10/02

  15. Update History of This Database - ConfC | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us ConfC Update History of This Database Date Update contents 2016/09/20 ConfC English archive ...tion Download License Update History of This Database Site Policy | Contact Us Update History of This Database - ConfC | LSDB Archive ... ...site is opened. 2005/05/01 ConfC (http://mbs.cbrc.jp/ConfC/) is opened. About This Database Database Descrip

  16. Update History of This Database - tRNADB-CE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us tRNADB-CE Update History of This Database Date Update contents 2014/08/25 Contact address, D.../trna.nagahama-i-bio.ac.jp/cgi-bin/trnadb/index.cgi ) is released. About This Database Database Description ...Download License Update History of This Database Site Policy | Contact Us Update History of This Database - tRNADB-CE | LSDB Archive ... ... Updated The data is updated to the latest version which is equivalent to the data version 6.1 of the origin

  17. Update History of This Database - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us fRNAdb Update History of This Database Date Update contents 2016/03/29 fRNAdb English archiv...on Download License Update History of This Database Site Policy | Contact Us Update History of This Database - fRNAdb | LSDB Archive ... ...e site is opened. 2006/12 fRNAdb ( http://www.ncrna.org/ ) is opened. About This Database Database Descripti

  18. Update History of This Database - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us TogoTV Update History of This Database Date Update contents 2017/05/12 TogoTV English archiv...ription Download License Update History of This Database Site Policy | Contact Us Update History of This Database - TogoTV | LSDB Archive ... ...e site is opened. 2007/07/20 TogoTV ( http://togotv.dbcls.jp/ ) is opened. About This Database Database Desc

  19. Update History of This Database - TP Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us TP Atlas Update History of This Database Date Update contents 2013/12/16 The email address i...s ( http://www.tanpaku.org/tpatlas/ ) is opened. About This Database Database Description Download License Update History of Thi...s Database Site Policy | Contact Us Update History of This Database - TP Atlas | LSDB Archive ... ...n the contact information is corrected. 2013/11/19 TP Atlas English archive site is opened. 2008/4/1 TP Atla

  20. Update History of This Database - Q-TARO | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Q-TARO Update History of This Database Date Update contents 2014/10/20 The URL of the portal...ption Download License Update History of This Database Site Policy | Contact Us Update History of This Database - Q-TARO | LSDB Archive ... ... site is changed. 2013/12/17 The URL of the portal site is changed. 2013/12/13 Q-TARO English archive site i...s opened. 2009/11/15 Q-TARO ( http://qtaro.abr.affrc.go.jp/ ) is opened. About This Database Database Descri

  1. Update History of This Database - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us JSNP Update History of This Database Date Update contents 2016/12/06 Description of the orig...ption Download License Update History of This Database Site Policy | Contact Us Update History of This Database - JSNP | LSDB Archive ... ...inal site (http://snp.ims.u-tokyo.ac.jp/index.html) is updated. 2016/02/01 JSNP English archive site is open...ed. 2000/07/07 JSNP (http://snp.ims.u-tokyo.ac.jp/index.html) is opened. About This Database Database Descri

  2. Database Description - RGP caps | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Creator Name: Kimiko Yamamoto Creator Affiliation: National Institute of Agrobiological Sciences Creator Na...me: Jianzhong Wu Creator Affiliation: National Institute of Agrobiological Scienc...es Creator Name: Takuji Sasaki* Creator Affiliation: National Institute of Agrobiological Sciences Contact a...ddress 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan National Institute of Agrobiological Sciences Takas...ase maintenance site National Institute of Agrobiological Sciences URL of the original website (Suspended)ht

  3. Alexander Forbes, Walter Cannon, and science-based literature.

    Science.gov (United States)

    Garson, Justin

    2013-01-01

    The Harvard physiologists Alexander Forbes (1882-1965) and Walter Bradford Cannon (1871-1945) had an enormous impact on the physiology and neuroscience of the twentieth century. In addition to their voluminous scientific output, they also used literature to reflect on the nature of science itself and its social significance. Forbes wrote a novel, The Radio Gunner, a literary memoir, Quest for a Northern Air Route, and several short stories. Cannon, in addition to several books of popular science, wrote a literary memoir in the last year of his life, The Way of an Investigator. The following will provide a brief overview of the life and work of Forbes and Cannon. It will then discuss the way that Forbes used literature to express his views about the changing role of communications technology in the military, and his evolving view of the nervous system itself as a kind of information-processing device. It will go on to discuss the way that Cannon used literature to articulate the horrors he witnessed on the battlefield, as well as to contribute to the philosophy of science, and in particular, to the logic of scientific discovery. Finally, it will consider the historical and philosophical value of deeper investigation of the literary productions of scientists. © 2013 Elsevier B.V. All rights reserved.

  4. Persepsi Mahasiswa Program Pascasarjana Terhadap Database Science Direct Pada Perpustakaan Universitas Sumatera Utara

    OpenAIRE

    Purba, Artita Wati Dorma

    2017-01-01

    120709051 Purba, Artita Wati Dorma. 2017. Persepsi Mahasiswa Program Pascasarjana terhadap Database Science Direct pada Perpustakaan Universitas Sumatera Utara. MEDAN: Program Studi Ilmu Perpustanaan, Fakultas Ilmu Budaya, Universitas Sumatera Utara Penelitian ini bertujuan untuk mengetahui bagaimanakah persepsi mahasiswa program Pascasarjana terhadap Database Science Direct pada Perpustakaan Universitas Sumatera Utara. Penelitian ini menggunakan metode deskriptif dengan pendekatan kuan...

  5. Update History of This Database - GenLibi | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us GenLibi Update History of This Database Date Update contents 2014/03/25 GenLibi English archi...base Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - GenLibi | LSDB Archive ... ...ve site is opened. 2007/03/01 GenLibi ( http://gene.biosciencedbc.jp/ ) is opened. About This Database Data

  6. Update History of This Database - dbQSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us dbQSNP Update History of This Database Date Update contents 2017/02/16 dbQSNP English archiv...e Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - dbQSNP | LSDB Archive ... ...e site is opened. 2002/10/23 dbQSNP (http://qsnp.gen.kyushu-u.ac.jp/) is opened. About This Database Databas

  7. Update History of This Database - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DB-SPIRE Update History of This Database Date Update contents 2017/02/16 DB-SPIRE English archi...ase Description Download License Update History of This Database Site Policy | Contact Us Update History of This Database - DB-SPIRE | LSDB Archive ... ...ve site is opened. 2005/04/01 DB-SPIRE (http://mbs.cbrc.jp/DB-SPIRE) is opened. About This Database Datab

  8. Database Description - BodyParts3D | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us BodyParts...3D Database Description General information of database Database name BodyParts3D A...encedb.jp/bp3d/ ) to readily generate an anatomical image of human body by selecting body parts... from BodyParts3D and setting desired viewpoint, zoom, color and opacity. License CC BY-SA Det...ail Background and funding Name: MEXT Integrated Database Project Reference(s) Article title: BodyParts3D: 3

  9. PSCID List - PSCDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...t.zip File URL: ftp://ftp.biosciencedbc.jp/archive/pscdb/LATEST/pscdb_pscid_list.zip File size: 24.4 KB Simp...nd-binding sites About This Database Database Description Download License Update History of This Database Site Policy | Contact Us PSCID List - PSCDB | LSDB Archive ...

  10. CardioGenBase: A Literature Based Multi-Omics Database for Major Cardiovascular Diseases.

    Directory of Open Access Journals (Sweden)

    Alexandar V

    Full Text Available Cardiovascular diseases (CVDs account for high morbidity and mortality worldwide. Both, genetic and epigenetic factors are involved in the enumeration of various cardiovascular diseases. In recent years, a vast amount of multi-omics data are accumulated in the field of cardiovascular research, yet the understanding of key mechanistic aspects of CVDs remain uncovered. Hence, a comprehensive online resource tool is required to comprehend previous research findings and to draw novel methodology for understanding disease pathophysiology. Here, we have developed a literature-based database, CardioGenBase, collecting gene-disease association from Pubmed and MEDLINE. The database covers major cardiovascular diseases such as cerebrovascular disease, coronary artery disease (CAD, hypertensive heart disease, inflammatory heart disease, ischemic heart disease and rheumatic heart disease. It contains ~1,500 cardiovascular disease genes from ~2,4000 research articles. For each gene, literature evidence, ontology, pathways, single nucleotide polymorphism, protein-protein interaction network, normal gene expression, protein expressions in various body fluids and tissues are provided. In addition, tools like gene-disease association finder and gene expression finder are made available for the users with figures, tables, maps and venn diagram to fit their needs. To our knowledge, CardioGenBase is the only database to provide gene-disease association for above mentioned major cardiovascular diseases in a single portal. CardioGenBase is a vital online resource to support genome-wide analysis, genetic, epigenetic and pharmacological studies.

  11. Complementary Value of Databases for Discovery of Scholarly Literature: A User Survey of Online Searching for Publications in Art History

    Science.gov (United States)

    Nemeth, Erik

    2010-01-01

    Discovery of academic literature through Web search engines challenges the traditional role of specialized research databases. Creation of literature outside academic presses and peer-reviewed publications expands the content for scholarly research within a particular field. The resulting body of literature raises the question of whether scholars…

  12. Database Description - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Name: NEDO Functional RNA Project (2006-2010) Reference(s) Article title: fRNAdb: a platform for mining/ann... Acids Research/2007/D145-8 External Links: Article title: The Functional RNA Database 3.0: databases to sup

  13. Full Data of Yeast Interacting Proteins Database (Original Version) - Yeast Interacting Proteins Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available E., Lingner, C., et al. (2000) Nucleic Acids Res. 28, 73-76.) are used for literature collection. Number of...ng co-occurrence of Prey and Bait in the literature, calculated by the calculation formula. Calculation form...don) 340, 245-246.) Data analysis method As the indicator of reliability of the interactions obtained by the experiment, the literatu...re information described about the yeast proteins and th

  14. Main - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ntents List of datasets Data file File name: kome_main.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome...ase Database Description Download License Update History of This Database Site Policy | Contact Us Main - KOME | LSDB Archive ...

  15. PREIMS - AT Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...Targeted Proteins Research Program (TPRP). Data file File name: at_atlas_preims.zip File URL: ftp://ftp.biosciencedbc.jp/archiv...base Database Description Download License Update History of This Database Site Policy | Contact Us PREIMS - AT Atlas | LSDB Archive ...

  16. EST data - RED | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...st.zip File URL: ftp://ftp.biosciencedbc.jp/archive/red/LATEST/red_est.zip File size: 629 KB Simple search U...ase Database Description Download License Update History of This Database Site Policy | Contact Us EST data - RED | LSDB Archive ...

  17. License - RGP physicalmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available nse Update History of This Database Site Policy | Contact Us License - RGP physicalmap | LSDB Archive ... ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RGP physi...calmap License License to Use This Database Last updated : 2015/07/07 You may use t

  18. Core Data of Yeast Interacting Proteins Database (Original Version) - Yeast Interacting Proteins Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available the YPD. Literature sharing score The score concerning co-occurrence of Prey and Bait in the literature, calculated by the calculati...on formula. Calculation formula for the score: CuraGen(0 or 1) Investigation by Cur

  19. The use of grey literature in health sciences: a preliminary survey.

    Science.gov (United States)

    Alberani, V; De Castro Pietrangeli, P; Mazza, A M

    1990-10-01

    The paper describes some initiatives in the field of grey literature (GL) and the activities, from 1985, of the Italian Library Association Study Group. The major categories of GL are defined; a survey that evaluates the use of GL by end users in the health sciences is described. References in selected periodicals and databases have been analyzed for the years 1987-1988 to determine the number of articles citing GL, the number of GL citations found in selected periodicals, the various types of GL found, and the number of technical reports cited and their country of origin and intergovernmental issuing organization. Selected databases were also searched to determine the presence of GL during those same years. The paper presents the first results obtained.

  20. bioNerDS: exploring bioinformatics’ database and software use through literature mining

    Science.gov (United States)

    2013-01-01

    Background Biology-focused databases and software define bioinformatics and their use is central to computational biology. In such a complex and dynamic field, it is of interest to understand what resources are available, which are used, how much they are used, and for what they are used. While scholarly literature surveys can provide some insights, large-scale computer-based approaches to identify mentions of bioinformatics databases and software from primary literature would automate systematic cataloguing, facilitate the monitoring of usage, and provide the foundations for the recovery of computational methods for analysing biological data, with the long-term aim of identifying best/common practice in different areas of biology. Results We have developed bioNerDS, a named entity recogniser for the recovery of bioinformatics databases and software from primary literature. We identify such entities with an F-measure ranging from 63% to 91% at the mention level and 63-78% at the document level, depending on corpus. Not attaining a higher F-measure is mostly due to high ambiguity in resource naming, which is compounded by the on-going introduction of new resources. To demonstrate the software, we applied bioNerDS to full-text articles from BMC Bioinformatics and Genome Biology. General mention patterns reflect the remit of these journals, highlighting BMC Bioinformatics’s emphasis on new tools and Genome Biology’s greater emphasis on data analysis. The data also illustrates some shifts in resource usage: for example, the past decade has seen R and the Gene Ontology join BLAST and GenBank as the main components in bioinformatics processing. Abstract Conclusions We demonstrate the feasibility of automatically identifying resource names on a large-scale from the scientific literature and show that the generated data can be used for exploration of bioinformatics database and software usage. For example, our results help to investigate the rate of change in resource

  1. Download - Yeast Interacting Proteins Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us Yeast Interacting Proteins Database Download First of all, please read the license of this d...atabase. Data names and data descriptions are about the downloadable data in this page. They might not corre... Data name File Simple search and download 1 README README_e.html - 2 Core Data o...f Yeast Interacting Proteins Database (Annotation Updated Version) core_updated.zip (77KB) Simple search and dow

  2. Update History of This Database - FANTOM5 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us FANTOM5 Update History of This Database Date Update contents 2017/03/14 FANTOM5 English archi...escription Download License Update History of This Database Site Policy | Contact Us Update History of This Database - FANTOM5 | LSDB Archive ... ...ve site is opened. 2016/12/20 Archive V2 is released. The following data are added. 「 (reprocessed)Heliscop... CAGE TSS aggregation 」 「 CAGE peaks 」 2015/12/07 FANTOM5 archive site is opened. (Archive V1) 2014/03/27 FA

  3. Spanich literature in brasilian journal of Library and Information Science

    Directory of Open Access Journals (Sweden)

    Maria Jesus Nascimento

    2008-01-01

    Full Text Available The aim of this paper is to produce a diagnosis of today’s grade of scientific cooperation in Archivist Documentation, Library and Information Science in the “Mercosul”. For this, analyses eight Brazilian electronic journals in order to show the Spanish literature published and cited during 2005 and 2006. Point out the Latin America information and cultural integration importance. Emphases the Spanish like an instrument of cohesion and second language in terms of word communication. As a conclusion, there are few Spanish article published in Brazilian journals and a lot of author citing Spanish literature but there isn’t work cooperation between Brazilian and other Latin American countries researchers.

  4. Energy and the social sciences. A preliminary literature survey

    Energy Technology Data Exchange (ETDEWEB)

    Sommers, P.

    1975-01-01

    The social science literature pertaining to energy problems is reviewed, and preliminary suggestions for research projects and research strategy are presented. Much of the social science literature on energy is in the field of economics, where such themes as econometric models, pricing policy, taxation, and government-industry interactions are discussed. Among the suggested research efforts is a study of proper economic criteria for determining rates of development of alternative sources of energy. The political science literature on energy is not well developed, but a review of it indicates interesting possibilities for research. The kinds of social and political institutions that would be most effective in an energy-constrained economy should be studied, and a comparative study of institutions now in existence in the United States and other countries is suggested. The social effects of centralized, comprehensive decision-making, which might be necessary in the event of significant shortages of energy, should be studied. The roles of community groups, interest groups, the media, government, etc., in decision-making should receive continuing attention. In the fields of sociology and psychology there is a need for more understanding of the attitudes, beliefs, and behavior of individuals about energy matters. The ways in which people adapt to energy shortages and changes in energy prices should be a subject for continuing studies. It is suggested that plans be made for surveys of coping strategies under emergency conditions as well as under conditions of gradual change. A possible long-range reaction to energy shortages and high prices might be a decrease in living-space available to individuals and families, and the work of psychologists in this area should be analyzed. 41 references.

  5. Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database.

    Science.gov (United States)

    Grondin, Cynthia J; Davis, Allan Peter; Wiegers, Thomas C; King, Benjamin L; Wiegers, Jolene A; Reif, David M; Hoppin, Jane A; Mattingly, Carolyn J

    2016-10-01

    Exposure science studies the interactions and outcomes between environmental stressors and human or ecological receptors. To augment its role in understanding human health and the exposome, we aimed to centralize and integrate exposure science data into the broader biological framework of the Comparative Toxicogenomics Database (CTD), a public resource that promotes understanding of environmental chemicals and their effects on human health. We integrated exposure data within the CTD to provide a centralized, freely available resource that facilitates identification of connections between real-world exposures, chemicals, genes/proteins, diseases, biological processes, and molecular pathways. We developed a manual curation paradigm that captures exposure data from the scientific literature using controlled vocabularies and free text within the context of four primary exposure concepts: stressor, receptor, exposure event, and exposure outcome. Using data from the Agricultural Health Study, we have illustrated the benefits of both centralization and integration of exposure information with CTD core data. We have described our curation process, demonstrated how exposure data can be accessed and analyzed in the CTD, and shown how this integration provides a broad biological context for exposure data to promote mechanistic understanding of environmental influences on human health. Curation and integration of exposure data within the CTD provides researchers with new opportunities to correlate exposures with human health outcomes, to identify underlying potential molecular mechanisms, and to improve understanding about the exposome. Grondin CJ, Davis AP, Wiegers TC, King BL, Wiegers JA, Reif DM, Hoppin JA, Mattingly CJ. 2016. Advancing exposure science through chemical data curation and integration in the Comparative Toxicogenomics Database. Environ Health Perspect 124:1592-1599; http://dx.doi.org/10.1289/EHP174.

  6. Database Description - TMBETA-GENOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ENOME is a database for transmembrane β-barrel proteins in complete genomes. For each genome, calculations with machine learning algo...rithms and statistical methods have been perfumed and th

  7. Lotka’s Law and the Literature of Library and Information Science in Turkey

    Directory of Open Access Journals (Sweden)

    Murat Yılmaz

    2006-03-01

    Full Text Available The aim of the study is to test the applicability of Lotka’s Law for the literature of library and information science in Turkey. The database of the study is 1399 papers published in The Bibliography of Articles in Turkish Periodicals between 1952 and 2000, by 604 researchers in the field of library and information scien­ce. The results of the study present the distribution of productivity of Lotka’s in­verse square law does not fit the distribution of the data constituted by the rese­archers in the field of library and information science in Turkey. In other words it was determined that Lotka’s inverse square law does not apply the literature of library and information science in Turkey. Furthermore it was determined that Lotka’s inverse power law fits the value of n (2,1128 calculated for the literatu­re of library and information science in Turkey.

  8. Download - SSBD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ion Download License Update History of This Database Site Policy | Contact Us Download - SSBD | LSDB Archive ...

  9. Download - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...Download License Update History of This Database Site Policy | Contact Us Download - RPSD | LSDB Archive ...

  10. Download - DGBY | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...base Description Download License Update History of This Database Site Policy | Contact Us Download - DGBY | LSDB Archive ...

  11. License - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ownload License Update History of This Database Site Policy | Contact Us License - DMPD | LSDB Archive ...

  12. License - DGBY | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available rch Institute, National Agriculture and Food Research Organization (NARO) 2-1-12 Kannondai, Tsukuba, Ibaraki...t a license for use of this database or any part thereof not licensed under the license. National Food Resea

  13. Protocol - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...e version) File URL: ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_protocol_jp.zip File size: 535 KB Fil...e name: rpd_protocol_en.zip (English version) File URL: ftp://ftp.biosciencedbc.jp/archiv...tabase Database Description Download License Update History of This Database Site Policy | Contact Us Protocol - RPD | LSDB Archive ...

  14. Database Description - PGDBj Registered plant list, Marker list, QTL list, Plant DB link & Genome analysis methods | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ency (JST) Reference(s) Article title: Plant Genome DataBase Japan (PGDBj): A Por... based on genome information : National Bioscience Database Center (NBDC) of Japan Science and Technology Ag

  15. The body complex in contemporary science, literature, and culture

    Science.gov (United States)

    Smith, Christopher Jason

    1998-12-01

    In the simplest terms, the purpose of this dissertation, entitled The Body Complex in Contemporary Science, Literature, and Culture is to examine the relationships between popular quantum mechanics, Chaos Theory (or complex dynamics), and contemporary Feminist/Gender theory. As the title is intended to suggest, this examination is narrowed to the 'event' of the body as it appears within the discourses of several different disciplines. The primary question is, 'what is the body and how do we define it?' And more, how do we conceive of 'a body' at all, from the cosmic to the molecular. How do these very different ideas of body reinforce and/or challenge our own concept of self and the experience of our bodies? And, how is this sense of embodiment represented in popular science, literature, and culture? Finally, the conclusion explores the possibility of liberating practices-complex actions-which may help to reveal the structures of power and alter in some useful ways our own sense of embodiment. This project relies most heavily upon the work of Michel Foucault and other gender critics such as Donna J. Harraway and Judith Butler. However, in support of these arguments a geneology of criticism is established which includes the Renaissance view of the body, a discussion of Karl Marx and materialism, Sigmund Freud and the body as the origin of mind, Lacan's linguistic approach to self-perception, and the theories of the French school of Feminism.

  16. Setting Up a Bibliographic Database from National Inventory of Scientific and Technical Literature. The CIDST Experience in Madagascar.

    Science.gov (United States)

    Andriamparany, Louis Marius; And Others

    1991-01-01

    Describes the development of a bibliographic database in Madagascar through a national inventory of scientific and technical literature. The roles of the Ministry of Scientific and Technological Research for Development (MRSTD) and its information service, CIDST, are described; database products are discussed; and future prospects are suggested.…

  17. Database Description - D-HaploDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available nology, Japan. Reference(s) Article title: Genome-wide definitive haplotypes determined using a collection o...Y, Tahira T, Hayashi K. Journal: Nucleic Acids Res. 2007 Jan;35(Database issue):D685-9. External Links: Article...(5):e1000468. External Links: Article title: A definitive haplotype map as determ... Hirakawa T, Kato H, Matsuda T, Pant K, Cox D, Tahira T, Hayashi K. Journal: Genome Res. 2005 Nov;15(11):1511-8. External Links: Arti...cle title: D-HaploDB: a database of definitive haplotype

  18. Download - Arabidopsis Phenome Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us Arabidopsis Phenome Database Download First of all, please read the license of this database.... Data names and data descriptions are about the downloadable data in this page. They might not correspond t...ame File Simple search and download 1 README README_e.html - 2 Observation of Ara...bidopsis phenotype riken_piam_main.zip (367 KB) Simple search and download 3 Image of Arabidopsis phenotype

  19. TogoDoc server/client system: smart recommendation and efficient management of life science literature.

    Science.gov (United States)

    Iwasaki, Wataru; Yamamoto, Yasunori; Takagi, Toshihisa

    2010-12-13

    In this paper, we describe a server/client literature management system specialized for the life science domain, the TogoDoc system (Togo, pronounced Toe-Go, is a romanization of a Japanese word for integration). The server and the client program cooperate closely over the Internet to provide life scientists with an effective literature recommendation service and efficient literature management. The content-based and personalized literature recommendation helps researchers to isolate interesting papers from the "tsunami" of literature, in which, on average, more than one biomedical paper is added to MEDLINE every minute. Because researchers these days need to cover updates of much wider topics to generate hypotheses using massive datasets obtained from public databases or omics experiments, the importance of having an effective literature recommendation service is rising. The automatic recommendation is based on the content of personal literature libraries of electronic PDF papers. The client program automatically analyzes these files, which are sometimes deeply buried in storage disks of researchers' personal computers. Just saving PDF papers to the designated folders makes the client program automatically analyze and retrieve metadata, rename file names, synchronize the data to the server, and receive the recommendation lists of newly published papers, thus accomplishing effortless literature management. In addition, the tag suggestion and associative search functions are provided for easy classification of and access to past papers (researchers who read many papers sometimes only vaguely remember or completely forget what they read in the past). The TogoDoc system is available for both Windows and Mac OS X and is free. The TogoDoc Client software is available at http://tdc.cb.k.u-tokyo.ac.jp/, and the TogoDoc server is available at https://docman.dbcls.jp/pubmed_recom.

  20. TogoDoc server/client system: smart recommendation and efficient management of life science literature.

    Directory of Open Access Journals (Sweden)

    Wataru Iwasaki

    Full Text Available In this paper, we describe a server/client literature management system specialized for the life science domain, the TogoDoc system (Togo, pronounced Toe-Go, is a romanization of a Japanese word for integration. The server and the client program cooperate closely over the Internet to provide life scientists with an effective literature recommendation service and efficient literature management. The content-based and personalized literature recommendation helps researchers to isolate interesting papers from the "tsunami" of literature, in which, on average, more than one biomedical paper is added to MEDLINE every minute. Because researchers these days need to cover updates of much wider topics to generate hypotheses using massive datasets obtained from public databases or omics experiments, the importance of having an effective literature recommendation service is rising. The automatic recommendation is based on the content of personal literature libraries of electronic PDF papers. The client program automatically analyzes these files, which are sometimes deeply buried in storage disks of researchers' personal computers. Just saving PDF papers to the designated folders makes the client program automatically analyze and retrieve metadata, rename file names, synchronize the data to the server, and receive the recommendation lists of newly published papers, thus accomplishing effortless literature management. In addition, the tag suggestion and associative search functions are provided for easy classification of and access to past papers (researchers who read many papers sometimes only vaguely remember or completely forget what they read in the past. The TogoDoc system is available for both Windows and Mac OS X and is free. The TogoDoc Client software is available at http://tdc.cb.k.u-tokyo.ac.jp/, and the TogoDoc server is available at https://docman.dbcls.jp/pubmed_recom.

  1. Download - Taxonomy Icon | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available n.zip (5.7 KB) Simple search and download 5 Images on Comment taxonomy_icon_comment_png_en.zip (15.8 MB) - Dow... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us Taxonomy Icon Download Please note that the data Commment and Images on Comment, shown in th...ms of use. First of all, please read the license of this database. Data names and data descriptions are about the dow...f the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  2. Science Mapping: A Systematic Review of the Literature

    Directory of Open Access Journals (Sweden)

    Chaomei Chen

    2017-03-01

    Full Text Available Purpose: We present a systematic review of the literature concerning major aspects of science mapping to serve two primary purposes: First, to demonstrate the use of a science mapping approach to perform the review so that researchers may apply the procedure to the review of a scientific domain of their own interest, and second, to identify major areas of research activities concerning science mapping, intellectual milestones in the development of key specialties, evolutionary stages of major specialties involved, and the dynamics of transitions from one specialty to another. Design/methodology/approach: We first introduce a theoretical framework of the evolution of a scientific specialty. Then we demonstrate a generic search strategy that can be used to construct a representative dataset of bibliographic records of a domain of research. Next, progressively synthesized co-citation networks are constructed and visualized to aid visual analytic studies of the domain’s structural and dynamic patterns and trends. Finally, trajectories of citations made by particular types of authors and articles are presented to illustrate the predictive potential of the analytic approach. Findings: The evolution of the science mapping research involves the development of a number of interrelated specialties. Four major specialties are discussed in detail in terms of four evolutionary stages: conceptualization, tool construction, application, and codification. Underlying connections between major specialties are also explored. The predictive analysis demonstrates citations trajectories of potentially transformative contributions. Research limitations: The systematic review is primarily guided by citation patterns in the dataset retrieved from the literature. The scope of the data is limited by the source of the retrieval, i.e. the Web of Science, and the composite query used. An iterative query refinement is possible if one would like to improve the data quality

  3. Database Description - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available mation(FY2014-FY2016). Reference(s) Article title: Plant Genome DataBase Japan (PGDBj): A Portal Website for...ukami-Kobayashi, Yukari Nakajima and Satoshi Tabata Journal: Plant Cell Physiol (2014) 55 (1): e8. External Links: Article

  4. OPS index - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...listed. Data file File name: kome_ops_index.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kom...e History of This Database Site Policy | Contact Us OPS index - KOME | LSDB Archive ...

  5. Image files - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_gel_image.zip File size: 38.5 MB Simple search URL - Data ... License Update History of This Database Site Policy | Contact Us Image files - RPD | LSDB Archive ...

  6. Main - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ilable. Data file File name: place_main.zip File URL: ftp://ftp.biosciencedbc.jp/archive/place/LATEST/place_...se Update History of This Database Site Policy | Contact Us Main - PLACE | LSDB Archive ...

  7. Images - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ta file File name: rpsd_images.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rpsd/LATEST/rpsd_images.zip ... History of This Database Site Policy | Contact Us Images - RPSD | LSDB Archive ...

  8. Main - TP Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...me: tp_atlas_en.zip File URL: ftp://ftp.biosciencedbc.jp/archive/tp_atlas/LATEST/...d License Update History of This Database Site Policy | Contact Us Main - TP Atlas | LSDB Archive ...

  9. Gel table - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...d_main.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_main.zip File size: 1 KB Simple searc...iption Download License Update History of This Database Site Policy | Contact Us Gel table - RPD | LSDB Archive ...

  10. Protein - TP Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...p_atlas_protein.zip File URL: ftp://ftp.biosciencedbc.jp/archive/tp_atlas/LATEST/...story of This Database Site Policy | Contact Us Protein - TP Atlas | LSDB Archive ...

  11. RMOS Contents - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ile File name: rmos_contents.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rmo...nse Update History of This Database Site Policy | Contact Us RMOS Contents - RMOS | LSDB Archive ...

  12. Download - Gclust Server | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available of the original database. Click the links on Data Name for descriptions of the data. DBCLS exchanges original data to CSV files. Note...able files in the original site. * Note that it takes long time when you open huge text files with text edit

  13. Databases

    Directory of Open Access Journals (Sweden)

    Nick Ryan

    2004-01-01

    Full Text Available Databases are deeply embedded in archaeology, underpinning and supporting many aspects of the subject. However, as well as providing a means for storing, retrieving and modifying data, databases themselves must be a result of a detailed analysis and design process. This article looks at this process, and shows how the characteristics of data models affect the process of database design and implementation. The impact of the Internet on the development of databases is examined, and the article concludes with a discussion of a range of issues associated with the recording and management of archaeological data.

  14. Database Description - Gclust Server | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ence and Technology of Japan Name: Research for the Future Program of the Japanese Society for Promotion of Science Reference(s) Arti...cle title: Gclust: trans-kingdom classification of prote

  15. Blending Education and Polymer Science: Semiautomated Creation of a Thermodynamic Property Database

    Science.gov (United States)

    Tchoua, Roselyne B.; Qin, Jian; Audus, Debra J.; Chard, Kyle; Foster, Ian T.; de Pablo, Juan

    2016-01-01

    Structured databases of chemical and physical properties play a central role in the everyday research activities of scientists and engineers. In materials science, researchers and engineers turn to these databases to quickly query, compare, and aggregate various properties, thereby allowing for the development or application of new materials. The…

  16. Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine.

    Directory of Open Access Journals (Sweden)

    Ayush Singhal

    2016-11-01

    Full Text Available The practice of precision medicine will ultimately require databases of genes and mutations for healthcare providers to reference in order to understand the clinical implications of each patient's genetic makeup. Although the highest quality databases require manual curation, text mining tools can facilitate the curation process, increasing accuracy, coverage, and productivity. However, to date there are no available text mining tools that offer high-accuracy performance for extracting such triplets from biomedical literature. In this paper we propose a high-performance machine learning approach to automate the extraction of disease-gene-variant triplets from biomedical literature. Our approach is unique because we identify the genes and protein products associated with each mutation from not just the local text content, but from a global context as well (from the Internet and from all literature in PubMed. Our approach also incorporates protein sequence validation and disease association using a novel text-mining-based machine learning approach. We extract disease-gene-variant triplets from all abstracts in PubMed related to a set of ten important diseases (breast cancer, prostate cancer, pancreatic cancer, lung cancer, acute myeloid leukemia, Alzheimer's disease, hemochromatosis, age-related macular degeneration (AMD, diabetes mellitus, and cystic fibrosis. We then evaluate our approach in two ways: (1 a direct comparison with the state of the art using benchmark datasets; (2 a validation study comparing the results of our approach with entries in a popular human-curated database (UniProt for each of the previously mentioned diseases. In the benchmark comparison, our full approach achieves a 28% improvement in F1-measure (from 0.62 to 0.79 over the state-of-the-art results. For the validation study with UniProt Knowledgebase (KB, we present a thorough analysis of the results and errors. Across all diseases, our approach returned 272 triplets

  17. Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine.

    Science.gov (United States)

    Singhal, Ayush; Simmons, Michael; Lu, Zhiyong

    2016-11-01

    The practice of precision medicine will ultimately require databases of genes and mutations for healthcare providers to reference in order to understand the clinical implications of each patient's genetic makeup. Although the highest quality databases require manual curation, text mining tools can facilitate the curation process, increasing accuracy, coverage, and productivity. However, to date there are no available text mining tools that offer high-accuracy performance for extracting such triplets from biomedical literature. In this paper we propose a high-performance machine learning approach to automate the extraction of disease-gene-variant triplets from biomedical literature. Our approach is unique because we identify the genes and protein products associated with each mutation from not just the local text content, but from a global context as well (from the Internet and from all literature in PubMed). Our approach also incorporates protein sequence validation and disease association using a novel text-mining-based machine learning approach. We extract disease-gene-variant triplets from all abstracts in PubMed related to a set of ten important diseases (breast cancer, prostate cancer, pancreatic cancer, lung cancer, acute myeloid leukemia, Alzheimer's disease, hemochromatosis, age-related macular degeneration (AMD), diabetes mellitus, and cystic fibrosis). We then evaluate our approach in two ways: (1) a direct comparison with the state of the art using benchmark datasets; (2) a validation study comparing the results of our approach with entries in a popular human-curated database (UniProt) for each of the previously mentioned diseases. In the benchmark comparison, our full approach achieves a 28% improvement in F1-measure (from 0.62 to 0.79) over the state-of-the-art results. For the validation study with UniProt Knowledgebase (KB), we present a thorough analysis of the results and errors. Across all diseases, our approach returned 272 triplets (disease

  18. Using Primary Literature for Teaching Undergraduate Planetary Sciences

    Science.gov (United States)

    Levine, J.

    2013-05-01

    Articles from the primary scientific literature can be a valuable teaching tool in undergraduate classrooms. At Colgate University, I emphasize selected research articles in an upper-level undergraduate course in planetary sciences. In addition to their value for conveying specific scientific content, I find that they also impart larger lessons which are especially apt in planetary sciences and allied fields. First, because of the interdisciplinary nature of planetary sciences, students discover that contributions to outstanding problems may arrive from unexpected directions, so they need to be aware of the multi-faceted nature of scientific problems. For instance, after millennia of astrometric attempts, the scale of the Solar System was determined with extraordinary precision with emerging radar technology in the 1960's. Second, students learn the importance of careful work, with due attention to detail. After all, the timescales of planetary formation are encoded in systematic isotopic variations of a few parts in 10,000; in students' own experiences with laboratory data they might well overlook such a small effect. Third, students identify the often-tortuous connections between measured and inferred quantities, which corrects a common student misconception that all quantities of interest (e.g., the age of a meteorite) can be measured directly. Fourth, research articles provide opportunities for students to practice the interpretation of graphical data, since figures often represent a large volume of data in succinct form. Fifth, and perhaps of greatest importance, by considering the uncertainties inherent in reported data, students come to recognize the limits of scientific understanding, the extent to which scientific conclusions are justified (or not), and the lengths to which working scientists go to mitigate their uncertainties. These larger lessons are best mediated by students' own encounters with the articles they read, but require instructors to make

  19. Jorge Luis Borges and the New Physics: the Literature of Modern Science and the Science of Modern Literature

    Science.gov (United States)

    Mosher, Mark Robert

    1992-01-01

    By examining the works of the Argentine writer, Jorge Luis Borges, and the parallels it has with modern physics, literature and science converge in their quest for truth regarding the structure and meaning of the universe. The classical perception of physics as a "hard" science--that of quantitative, rational thought which was established during the Newtonian era--has been replaced by the "new physics," which integrates the so-called "soft" elements into its paradigm. It presents us with a universe based not exclusively on a series of particle-like interactions, or a "billiard-ball" hypothesis where discrete objects have a measurable position and velocity in absolute space and time, but rather on a combination of these mechanistic properties and those that make up the non-physical side of nature such as intuition, consciousness, and emotion. According to physicists like James Jeans science has been "humanized" to the extent that the universe as a "great machine" has been converted into a "great thought.". In nearly all his collections of essays and short stories, Borges complements the new physics by producing a literature that can be described as "scientized." The abstract, metaphysical implications and concerns of the new world-view, such as space, time, language, consciousness, free will, determinism, etc., appear repeatedly throughout Borges' texts, and are treated in terms that are remarkably similar to those expressed in the scientific texts whose authors include Albert Einstein, Niels Bohr, Werner Heisenberg, and Erwin Schrodinger. As a final comparison, Borges and post-modern physicists address the question of the individual's ability to ever comprehend the universe. They share an attitude of incredulity toward all models and theories of reality simply because they are based on partial information, and therefore seen only as conjectures.

  20. A world of nuclear and radiation literature. Database INIS exists 25 year; Een wereld van nucleaire en stralingsliteratuur. Database INIS bestaat 25 jaar

    Energy Technology Data Exchange (ETDEWEB)

    Verkroost, H. [Netherlands Energy Research Foundation ECN, Petten (Netherlands). Unit ECN Policy Studies

    1995-09-01

    On the occasion of the 25th birthday of the database INIS a brief overview is given of the contents of INIS, its products and services, and the future of INIS. For the readers of this magazine an indication is given of the literature that is available in INIS in the subject categories for external radiation, internal radiation, radiation protection and dosimetry. 1 tab.

  1. License - Yeast Interacting Proteins Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 2009 Takashi Ito(the University of Tokyo) licensed under CC Attribution-Share Alike 2.1 Japan . The summary... of the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With r...the Standard License. Standard License The Standard License for this database is the license specified in the Creative Commons Attrib...ution-Share Alike 2.1 Japan . If you use data from this

  2. Main - RPSD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... as rice. Data file File name: rpsd_main_sjis.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rpsd/LATEST/r.../ftp.biosciencedbc.jp/archive/rpsd/LATEST/rpsd_main_utf8.zip File size: 120 KB Simple search URL http://togo...nse Update History of This Database Site Policy | Contact Us Main - RPSD | LSDB Archive ...

  3. Experimental Conditions - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol... and Data Analysis (D) etc. Data file File name: metabolonote_experimental_conditions.zip File URL: ftp://ft...p.biosciencedbc.jp/archive/metabolonote/LATEST/metabolonote_experimental_conditio...ns.zip File size: 15 KB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/metabolonote_experiment...y of This Database Site Policy | Contact Us Experimental Conditions - Metabolonote | LSDB Archive ...

  4. Entire Sequence - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RMG Entir...e Sequence Data detail Data name Entire Sequence DOI 10.18908/lsdba.nbdc00193-002 D...escription of data contents The data for entire sequence of rice mitochondrial genome with a total length of...ownload License Update History of This Database Site Policy | Contact Us Entire Sequence - RMG | LSDB Archive ...

  5. Home | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available m and stable state as national public goods. The Archive makes it easier for many people to search datasets by metada... Metadata (Materials and Methods) whole organism A database specified for managing information on experimental methods (metada...argets: [0] } ] }); // 「全メタデータをエクスポート」ボタン jQuery('.metadata-export-all').on('clic

  6. Selection effects and database screening in forensic science

    NARCIS (Netherlands)

    Meester, R.W.J.; Sjerps, M.

    2009-01-01

    We argue that it is, in principle, not difficult to deal with selection effects in forensic science. If a suspect is selected through a process that is related to the forensic evidence, then the strength of the evidence will be compensated by very small prior odds. No further correction is

  7. Database Description - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available tion of databases Reference(s) Article title: バイオインフォマティクスを使い尽くす秘訣教えます!【第3回】「DBCL...Sが提供する日本語コンテンツ」 Author name(s): 飯田啓介、小野 浩雅 Journal: 生物工学会誌 第95巻 第1号(2017/1/25) External Links: Article title

  8. Using XML technology for the ontology-based semantic integration of life science databases.

    Science.gov (United States)

    Philippi, Stephan; Köhler, Jacob

    2004-06-01

    Several hundred internet accessible life science databases with constantly growing contents and varying areas of specialization are publicly available via the internet. Database integration, consequently, is a fundamental prerequisite to be able to answer complex biological questions. Due to the presence of syntactic, schematic, and semantic heterogeneities, large scale database integration at present takes considerable efforts. As there is a growing apprehension of extensible markup language (XML) as a means for data exchange in the life sciences, this article focuses on the impact of XML technology on database integration in this area. In detail, a general architecture for ontology-driven data integration based on XML technology is introduced, which overcomes some of the traditional problems in this area. As a proof of concept, a prototypical implementation of this architecture based on a native XML database and an expert system shell is described for the realization of a real world integration scenario.

  9. Using Primary Literature to Teach Science Literacy to Introductory Biology Students

    OpenAIRE

    Krontiris-Litowitz, Johanna

    2013-01-01

    Undergraduate students struggle to read the scientific literature and educators have suggested that this may reflect deficiencies in their science literacy skills. In this two-year study we develop and test a strategy for using the scientific literature to teach science literacy skills to novice life science majors. The first year of the project served as a preliminary investigation in which we evaluated student science literacy skills, created a set of science literacy learning objectives al...

  10. Expanding Comparative Literature into Comparative Sciences Clusters with Neutrosophy and Quad-stage Method

    Directory of Open Access Journals (Sweden)

    Fu Yuhua

    2016-08-01

    Full Text Available By using Neutrosophy and Quad-stage Method, the expansions of comparative literature include: comparative social sciences clusters, comparative natural sciences clusters, comparative interdisciplinary sciences clusters, and so on. Among them, comparative social sciences clusters include: comparative literature, comparative history, comparative philosophy, and so on; comparative natural sciences clusters include: comparative mathematics, comparative physics, comparative chemistry, comparative medicine, comparative biology, and so on.

  11. Polymorphism Sequence - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us JSNP Polymorphism Sequence Data detail Data name Polymorphism Sequence DOI 10.18908/lsdba.nb...dc00114-001 Description of data contents Information on polymorphisms (SNPs and insertions/deletions) and th...RL: ftp://ftp.biosciencedbc.jp/archive/jsnp/LATEST/jsnp_seq.zip File size: 10.6 MB Simple search URL http://...se Name database name JSNP_SNP: single nucleotide polymorphism JSNP_InsDel_IND: insertion/deletion JSNP_InsD

  12. Sample (S) - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...scription of data contents Information about sample preparation methods. Data file File name: metabolonote_s...ample.zip File URL: ftp://ftp.biosciencedbc.jp/archive/metabolonote/LATEST/metabolonote_sample.zip File size...: 110 KB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/metabolonot...iption Download License Update History of This Database Site Policy | Contact Us Sample (S) - Metabolonote | LSDB Archive ...

  13. Download - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available genomic_dynamism.zip (1 KB) Simple search and download Downlaod via FTP FTP server is sometimes jammed. If i... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RMG Dow...ginal database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow...nload 1 README README_e.html - 2 Main data rmg_main.zip (1 KB) Simple search and dow

  14. Download - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available t_5end_all.fasta.zip (27 MB) Simple search and download Downlaod via FTP FTP serv... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us KOME Dow...scriptions are about the downloadable data in this page. They might not correspond to the contents of the or...iginal database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  15. Download - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available (f_g_primer) rmos_f_g_primer_table.csv.zip (636 KB) Simple search and download Downlaod via FTP FTP server i... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RMOS Dow...scriptions are about the downloadable data in this page. They might not correspond to the contents of the or...iginal database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  16. Download - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us PLACE Dow...escriptions are about the downloadable data in this page. They might not correspond to the contents of the o...riginal database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow...nload 1 README README_e.html - 2 Main place_main.zip (48.9 KB) Simple search and dow

  17. Download - GETDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us GETDB Dow...escriptions are about the downloadable data in this page. They might not correspond to the contents of the o...riginal database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow... List) of Drosophila GAL4 enhancer trap lines getdb.zip (331KB) Simple search and download 3 Genome mapping

  18. Mapping Information - JSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us JSNP Mapping Information Data detail Data name Mapping Information DOI 10.18908/lsdba.nbdc00...114-004 Description of data contents Information from mapping polymorphisms on the genome. Derived from Dump...ze: 24 MB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/jsnp_dump#en Data acquisition method From Screening Info...ate History of This Database Site Policy | Contact Us Mapping Information - JSNP | LSDB Archive ... ...e snp (-1: no frequency information) from JSNP freq_major major allele frequency of the snp from JSNP chr ch

  19. Disease - KEGG MEDICUS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ion of data contents The KEGG DISEASE database is a collection of human diseases, each represented as a list of dise...1,359 entries Data item Description H number Unique identifier of the KEGG DISEASE entry. Name Disease names...List Contact us KEGG MEDICUS Disease Data detail Data name Disease DOI 10.18908/lsdba.nbdc01185-003 Descript...bling computational processing and analysis of disease data. Data file File name: kegg_medicus_dise...ase_en.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kegg-medicus/LATEST/kegg_medicus_dise

  20. Guided Imagery and Music Bibliography and GIM/Related Literature Refworks Database

    DEFF Research Database (Denmark)

    Bonde, Lars Ole

    2010-01-01

    Bibliografi og database over litteratur om den receptive musikterapimetode Guided Imagery and Music......Bibliografi og database over litteratur om den receptive musikterapimetode Guided Imagery and Music...

  1. Using Children's Literature to Teach Standard-Based Science Concepts in Early Years

    Science.gov (United States)

    Sackes, Mesut; Trundle, Kathy Cabe; Flevares, Lucia M.

    2009-01-01

    This paper discusses the benefits and limitations of using children's literature in introducing science concepts to young children. The manuscript also provides an overview of preschool science standards of 12 states and presents lists of appropriate children's literature suitable to use in teaching science concepts targeted in those preschool…

  2. Knowledge management : generalisation to specialisation of social science information databases

    OpenAIRE

    Koganuramath, M. M.; Angadi, Mallikarjun; Hiremath, C. V.; Bandi, Anand

    2000-01-01

    The modest objective of the paper is to present an overview as seen from the inside of the daily practice in social sciences documentation and communication networks in India and around the world. An effort has also been made to carry out a detailed study in depicting the impact of information technology on information acquisition and retrieval which has been increasing in recent past. The study results on the awareness and development of changing environments and adoption of information te...

  3. The LAILAPS search engine: a feature model for relevance ranking in life science databases.

    Science.gov (United States)

    Lange, Matthias; Spies, Karl; Colmsee, Christian; Flemming, Steffen; Klapperstück, Matthias; Scholz, Uwe

    2010-03-25

    Efficient and effective information retrieval in life sciences is one of the most pressing challenge in bioinformatics. The incredible growth of life science databases to a vast network of interconnected information systems is to the same extent a big challenge and a great chance for life science research. The knowledge found in the Web, in particular in life-science databases, are a valuable major resource. In order to bring it to the scientist desktop, it is essential to have well performing search engines. Thereby, not the response time nor the number of results is important. The most crucial factor for millions of query results is the relevance ranking. In this paper, we present a feature model for relevance ranking in life science databases and its implementation in the LAILAPS search engine. Motivated by the observation of user behavior during their inspection of search engine result, we condensed a set of 9 relevance discriminating features. These features are intuitively used by scientists, who briefly screen database entries for potential relevance. The features are both sufficient to estimate the potential relevance, and efficiently quantifiable. The derivation of a relevance prediction function that computes the relevance from this features constitutes a regression problem. To solve this problem, we used artificial neural networks that have been trained with a reference set of relevant database entries for 19 protein queries. Supporting a flexible text index and a simple data import format, this concepts are implemented in the LAILAPS search engine. It can easily be used both as search engine for comprehensive integrated life science databases and for small in-house project databases. LAILAPS is publicly available for SWISSPROT data at http://lailaps.ipk-gatersleben.de.

  4. Report on the present situation of the FY 1998 technical literature database; 1998 nendo gijutsu bunken database nado genjo chosa

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    1999-03-01

    To study database which contributes to the future scientific technology information distribution, survey/analysis were conducted of the present status of the service supply side. In the survey on the database trend, the trend of relations between DB producers and distributors was investigated. As a result, there were seen the increase in DB producers, expansion of internet/distribution/service, etc., and there were no changes in the U.S.-centered structure. Further, it was recognized that the DB service in the internet age now faces the time of change as seen in existing producers' response to internet, on-line service of primary information source, creation of new on-line service, etc. By the internet impact, the following are predicted for the future DB service: slump of producers without strong points and gateway type distributors, appearance of new types of DB service, etc. (NEDO)

  5. Geoscience on television : a review of science communication literature in the context of geosciences

    NARCIS (Netherlands)

    Hut, W R.; Land, A.M.; Smeets, I.; Stoof, C.

    2016-01-01

    Geoscience communication is becoming increasingly important as climate change increases the occurrence of natural hazards around the world. Few geoscientists are trained in effective science communication, and awareness of the formal science communication literature is also low. This can be

  6. Team science as interprofessional collaborative research practice: a systematic review of the science of team science literature

    Science.gov (United States)

    Little, Meg M; St Hill, Catherine A; Ware, Kenric B; Swanoski, Michael T; Chapman, Scott A; Lutfiyya, M Nawal; Cerra, Frank B

    2017-01-01

    The National Institute of Health's concept of team science is a means of addressing complex clinical problems by applying conceptual and methodological approaches from multiple disciplines and health professions. The ultimate goal is the improved quality of care of patients with an emphasis on better population health outcomes. Collaborative research practice occurs when researchers from >1 health-related profession engage in scientific inquiry to jointly create and disseminate new knowledge to clinical and research health professionals in order to provide the highest quality of patient care to improve population health outcomes. Training of clinicians and researchers is necessary to produce clinically relevant evidence upon which to base patient care for disease management and empirically guided team-based patient care. In this study, we hypothesized that team science is an example of effective and impactful interprofessional collaborative research practice. To assess this hypothesis, we examined the contemporary literature on the science of team science (SciTS) produced in the past 10 years (2005–2015) and related the SciTS to the overall field of interprofessional collaborative practice, of which collaborative research practice is a subset. A modified preferred reporting items for systematic reviews and meta-analyses (PRISMA) approach was employed to analyze the SciTS literature in light of the general question: Is team science an example of interprofessional collaborative research practice? After completing a systematic review of the SciTS literature, the posed hypothesis was accepted, concluding that team science is a dimension of interprofessional collaborative practice. PMID:27619555

  7. Image collection - Togo Picture Gallery | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available on of data contents It is the image collection for life science. Images are provided in 3 file format (PNG, ...AI, SVG). Data file File name: image File URL: ftp://ftp.biosciencedbc.jp/archive/togo-pic/image/ File size:... URL http://togodb.biosciencedbc.jp/togodb/view/togo_pic_image#en Data acquisition method - Data analysis me...ame Taxonomy ID Taxonomy ID Tags Tags associated with the image About This Database Database Description Dow

  8. [Red yeast-rice-induced muscular injuries: Analysis of French pharmacovigilance database and literature review].

    Science.gov (United States)

    Philibert, Christelle; Bres, Virginie; Jean-Pastor, Marie-Josèphe; Guy, Claire; Lebrun-Vignes, Bénédicte; Robin, Perrine; Pinzani, Véronique; Hillaire-Buys, Dominique

    2016-10-27

    Red yeast rice (RYR) is a dietary supplement containing monacolins obtained by fermentation of Monascus purpureus strains. Because of its structural homology with lovastatin, monacolin K inhibits HMG-CoA reductase and shows hypocholesterolemic properties comparable to synthetic statins. We studied all cases of myopathy involving RYR reported in the French national pharmacovigilance database (6 cases) and in scientific literature (9 cases). Among these cases, 9 showed elevated creatine kinase, 3 rhabdomyolysis and 2 myalgia. Recent studies seem to show good efficacy of the RYR, however, our work reports the existence of related muscular disorders. In addition, dietary supplements currently available on the market may show considerable variability of formulation and/or the presence of contaminants. When clinicobiological disorders occur, physicians should consider the eventual use of an herbal treatment. Copyright © 2014 Société française de pharmacologie et de thérapeutique. Published by Elsevier Masson SAS. All rights reserved.

  9. Lead exposure in US worksites: A literature review and development of an occupational lead exposure database from the published literature

    Science.gov (United States)

    Koh, Dong-Hee; Locke, Sarah J.; Chen, Yu-Cheng; Purdue, Mark P.; Friesen, Melissa C.

    2016-01-01

    Background Retrospective exposure assessment of occupational lead exposure in population-based studies requires historical exposure information from many occupations and industries. Methods We reviewed published US exposure monitoring studies to identify lead exposure measurement data. We developed an occupational lead exposure database from the 175 identified papers containing 1,111 sets of lead concentration summary statistics (21% area air, 47% personal air, 32% blood). We also extracted ancillary exposure-related information, including job, industry, task/location, year collected, sampling strategy, control measures in place, and sampling and analytical methods. Results Measurements were published between 1940 and 2010 and represented 27 2-digit standardized industry classification codes. The majority of the measurements were related to lead-based paint work, joining or cutting metal using heat, primary and secondary metal manufacturing, and lead acid battery manufacturing. Conclusions This database can be used in future statistical analyses to characterize differences in lead exposure across time, jobs, and industries. PMID:25968240

  10. Overlap articles of respiratory system in databases Scopus and Web of Science: brief report

    Directory of Open Access Journals (Sweden)

    Seyed Javad Ghazimirsaeed

    2015-03-01

    Conclusion: Because of overlaping the contents of two information databases such as scopus and web of sciences searching for accessing to respiratory system from scopus is better due to containing unique papers ,However it is highly recommended to pay to this point while buying and sharing the mentioned resources.

  11. Open-access databases as unprecedented resources and drivers of cultural change in fisheries science

    Energy Technology Data Exchange (ETDEWEB)

    McManamay, Ryan A [ORNL; Utz, Ryan [National Ecological Observatory Network

    2014-01-01

    Open-access databases with utility in fisheries science have grown exponentially in quantity and scope over the past decade, with profound impacts to our discipline. The management, distillation, and sharing of an exponentially growing stream of open-access data represents several fundamental challenges in fisheries science. Many of the currently available open-access resources may not be universally known among fisheries scientists. We therefore introduce many national- and global-scale open-access databases with applications in fisheries science and provide an example of how they can be harnessed to perform valuable analyses without additional field efforts. We also discuss how the development, maintenance, and utilization of open-access data are likely to pose technical, financial, and educational challenges to fisheries scientists. Such cultural implications that will coincide with the rapidly increasing availability of free data should compel the American Fisheries Society to actively address these problems now to help ease the forthcoming cultural transition.

  12. Lead exposure in US worksites: A literature review and development of an occupational lead exposure database from the published literature.

    Science.gov (United States)

    Koh, Dong-Hee; Locke, Sarah J; Chen, Yu-Cheng; Purdue, Mark P; Friesen, Melissa C

    2015-06-01

    Retrospective exposure assessment of occupational lead exposure in population-based studies requires historical exposure information from many occupations and industries. We reviewed published US exposure monitoring studies to identify lead measurement data. We developed an occupational lead exposure database from the 175 identified papers containing 1,111 sets of lead concentration summary statistics (21% area air, 47% personal air, 32% blood). We also extracted ancillary exposure-related information, including job, industry, task/location, year collected, sampling strategy, control measures in place, and sampling and analytical methods. The measurements were published between 1940 and 2010 and represented 27 2-digit standardized industry classification codes. The majority of the measurements were related to lead-based paint work, joining or cutting metal using heat, primary and secondary metal manufacturing, and lead acid battery manufacturing. This database can be used in future statistical analyses to characterize differences in lead exposure across time, jobs, and industries. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

  13. Promises and Challenges for the Use of Adapted Primary Literature in Science Curricula: Commentary

    Science.gov (United States)

    Ford, Danielle J.

    2009-01-01

    The papers in this collection provide compelling arguments that the use of Adapted Primary Literature (APL) in science education holds great promise for enriching inquiry science instruction at the secondary level. The integration of this genre of written text into science curricula illustrates the ways in which reasoning in reading and reasoning…

  14. SCIENCE FACILITIES. A CLASSIFIED LIST OF LITERATURE RELATED TO DESIGN, CONSTRUCTION AND OTHER ARCHITECTURAL MATTERS.

    Science.gov (United States)

    National Science Foundation, Washington, DC.

    A CLASSIFIED LIST OF ARTICLES, PAPERS AND CATALOGS IN THE SCIENCE FACILITIES COLLECTION OF THE ARCHITECTURAL SERVICES STAFF OF THE NATIONAL SCIENCE FOUNDATION IS PRESENTED WHICH MAY BE USEFUL IN SEARCHING FOR PERTINENT LITERATURE ON PROBLEMS IN THE DESIGN OF SCIENCE FACILITIES. CITATIONS COVER SUCH AREAS AS GENERAL PLANNING, SPACE UTILIZATION AND…

  15. Striking the Right Balance: An Evaluation of a Literature Database To Support Problem Based Learning.

    Science.gov (United States)

    Quinlan, Kathleen M.

    Faculty at the College of Veterinary Medicine, Cornell University, have developed a bibliographic database of articles to support problem based learning. The database, its role in the curriculum, and its effectiveness in guiding, without undermining, self-directed learning were studied, using the goals of problem based learning as a framework.…

  16. Using News Media Databases (LexisNexis) To Identify Relevant Topics For Introductory Earth Science Classes

    Science.gov (United States)

    Cervato, C.; Jach, J. Y.; Ridky, R.

    2003-12-01

    Introductory Earth science courses are undergoing pedagogical changes in universities across the country and are focusing more than ever on the non-science majors. Increasing enrollment of non-science majors in these introductory Earth science courses demands a new look at what is being taught and how the content can be objectively chosen. Assessing the content and effectiveness of these courses requires a quantitative investigation of introductory Earth science topics and their relevance to current issues and concerns. Relevance of Earth science topics can be linked to improved students' attitude toward science and a deeper understanding of concepts. We have used the Internet based national news search-engine LexisNexis Academic Universe (http://www.lexisnexis.org/) to select the occurrence of Earth science terms over the last 12 months, five and ten years both regionally and nationally. This database of term occurrences is being used to examine how Earth sciences have evolved in the news through the last 10 years and is also compared with textbook contents and course syllabi from randomly selected introductory earth science courses across the nation. These data constitute the quantitative foundation for this study and are being used to evaluate the relevance of introductory earth science course content. The relevance of introductory course content and current real-world issues to student attitudes is a crucial factor when considering changes in course curricula and pedagogy. We have examined students' conception of the nature of science and attitudes towards science and learning science using a Likert-scale assessment instrument in the fall 2002 Geology 100 classes at Iowa State University. A pre-test and post-test were administered to see if the students' attitudes changed during the semester using as reference a control group comprised of geoscience undergraduate and graduate students, and faculty. The results of the attitude survey have been analyzed in terms

  17. Referencing Science: Teaching Undergraduates to Identify, Validate, and Utilize Peer-Reviewed Online Literature

    Science.gov (United States)

    Berzonsky, William A.; Richardson, Katherine D.

    2008-01-01

    Accessibility of online scientific literature continues to expand due to the advent of scholarly databases and search engines. Studies have shown that undergraduates favor using online scientific literature to address research questions, but they often do not have the skills to assess the validity of research articles. Undergraduates generally are…

  18. Literature review: instructional design and pedagogy science in healthcare simulation.

    Science.gov (United States)

    Schaefer, John J; Vanderbilt, Allison A; Cason, Carolyn L; Bauman, Eric B; Glavin, Ronnie J; Lee, Frances W; Navedo, Deborah D

    2011-08-01

    This article is a review of the literature focused on simulation as an educational intervention in healthcare. The authors examined the literature based on four key levels: (1) the validity and reliability of the simulator, (2) the validity and reliability of the performance evaluation tool, (3) the study design, and (4) the translational impact. The authors found that the majority of research literature in healthcare simulation does not address the validity and reliability of the simulator or the performance evaluation tool. However, there are well-designed research studies that address the translation into clinical settings and have positive patient safety outcomes.

  19. Information Literacy in Science Writing: How Students Find, Identify, and Use Scientific Literature

    Science.gov (United States)

    Klucevsek, Kristin M.; Brungard, Allison B.

    2016-01-01

    For undergraduate students to achieve science literacy, they must first develop information literacy skils. These skills align with Information Literacy Standards and include determining appropriate databases, distinguishing among resource types, and citing resources ethically. To effectively improve information literacy and science literacy, we…

  20. Surveying the traumatic stress literature: the effective use of bibliographic databases in preparing reviews and meta-analyses.

    Science.gov (United States)

    Lerner, Fred; Hamblen, Jessica L

    2010-12-01

    The value of a systematic review or meta-analysis depends upon the care with which it is designed and conducted. A major factor in this is the literature search that identifies the articles to be reviewed. Careful selection of bibliographic databases and the use of well-designed search strategies based on the controlled vocabularies contained in published thesauri are essential to ensure retrieval of all relevant articles. This commentary offers suggestions for identifying the literature to be searched, designing a suitable search strategy, using a controlled vocabulary, and describing the bibliographic methodology underlying a systematic review or meta-analysis.

  1. Update History of This Database - Nikkaji-InChI Mapping Table | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Nikkaji-InChI Mapping Table Update History of This Database Date Update contents 2016/08/26 ...InChI Mapping Table English archive site is opened. About This Database Database Description Download License Update Histor...y of This Database Site Policy | Contact Us Update History of This Database - Nikkaji-InChI Mapping Table | LSDB Archive ...

  2. Appropriation and the uses of comics in information science literature

    Directory of Open Access Journals (Sweden)

    Valdir José Morigi

    2016-04-01

    Full Text Available Introduction: This article realizes the bibliographic mapping in the studies of Information Science, to demonstrate the development of comics in this area. Objective: Mapping studies about comics made in Information Science, showing their uses and appropriations in the dissemination's process of the collected results in this research. Methodology: Bibliographical research with qualitative-quantitative approach. Results: The comics are subject of research in Information Science from the perspective of the dissemination and interpretation of informatiom. Its use helps in the learning of the users and scholars shows its benefits. The studies demonstrate that the comics provide a mental effort because the visuals also allow learning. Studies also show that they can be used for research, where are showed the knowledge acquired in reading of comics, in other words, the knowledge without scientific basis. Conclusions: Concludes that some studies of Information Science determine which purposes the comics are appropriated by users.

  3. Literature Review and Database of Relations Between Salinity and Aquatic Biota: Applications to Bowdoin National Wildlife Refuge, Montana

    Science.gov (United States)

    Gleason, Robert A.; Tangen, Brian A.; Laubhan, Murray K.; Finocchiaro, Raymond G.; Stamm, John F.

    2009-01-01

    Long-term accumulation of salts in wetlands at Bowdoin National Wildlife Refuge (NWR), Mont., has raised concern among wetland managers that increasing salinity may threaten plant and invertebrate communities that provide important habitat and food resources for migratory waterfowl. Currently, the U.S. Fish and Wildlife Service (USFWS) is evaluating various water management strategies to help maintain suitable ranges of salinity to sustain plant and invertebrate resources of importance to wildlife. To support this evaluation, the USFWS requested that the U.S. Geological Survey (USGS) provide information on salinity ranges of water and soil for common plants and invertebrates on Bowdoin NWR lands. To address this need, we conducted a search of the literature on occurrences of plants and invertebrates in relation to salinity and pH of the water and soil. The compiled literature was used to (1) provide a general overview of salinity concepts, (2) document published tolerances and adaptations of biota to salinity, (3) develop databases that the USFWS can use to summarize the range of reported salinity values associated with plant and invertebrate taxa, and (4) perform database summaries that describe reported salinity ranges associated with plants and invertebrates at Bowdoin NWR. The purpose of this report is to synthesize information to facilitate a better understanding of the ecological relations between salinity and flora and fauna when developing wetland management strategies. A primary focus of this report is to provide information to help evaluate and address salinity issues at Bowdoin NWR; however, the accompanying databases, as well as concepts and information discussed, are applicable to other areas or refuges. The accompanying databases include salinity values reported for 411 plant taxa and 330 invertebrate taxa. The databases are available in Microsoft Excel version 2007 (http://pubs.usgs.gov/sir/2009/5098/downloads/databases_21april2009.xls) and contain

  4. Guided Imagery and Music Bibliography and GIM/Related Literature Refworks Database

    OpenAIRE

    Lars Ole Bonde

    2010-01-01

    This bibliography contains selected literature related to the Bonny Method of Guided Imagery and Music (GIM).  The literature includes articles, books, book chapters, unpublished dissertations, masters theses and manuscripts (the latter, mostly “final projects” from GIM training, included in the Bonny Archives at Temple University, unless indicated otherwise), reports, discographies, audio tapes, videos etc.

  5. Social Work Literature Searching: Current Issues with Databases and Online Search Engines

    Science.gov (United States)

    McGinn, Tony; Taylor, Brian; McColgan, Mary; McQuilkan, Janice

    2016-01-01

    Objectives: To compare the performance of a range of search facilities; and to illustrate the execution of a comprehensive literature search for qualitative evidence in social work. Context: Developments in literature search methods and comparisons of search facilities help facilitate access to the best available evidence for social workers.…

  6. Text mining facilitates database curation - extraction of mutation-disease associations from Bio-medical literature.

    Science.gov (United States)

    Ravikumar, Komandur Elayavilli; Wagholikar, Kavishwar B; Li, Dingcheng; Kocher, Jean-Pierre; Liu, Hongfang

    2015-06-06

    Advances in the next generation sequencing technology has accelerated the pace of individualized medicine (IM), which aims to incorporate genetic/genomic information into medicine. One immediate need in interpreting sequencing data is the assembly of information about genetic variants and their corresponding associations with other entities (e.g., diseases or medications). Even with dedicated effort to capture such information in biological databases, much of this information remains 'locked' in the unstructured text of biomedical publications. There is a substantial lag between the publication and the subsequent abstraction of such information into databases. Multiple text mining systems have been developed, but most of them focus on the sentence level association extraction with performance evaluation based on gold standard text annotations specifically prepared for text mining systems. We developed and evaluated a text mining system, MutD, which extracts protein mutation-disease associations from MEDLINE abstracts by incorporating discourse level analysis, using a benchmark data set extracted from curated database records. MutD achieves an F-measure of 64.3% for reconstructing protein mutation disease associations in curated database records. Discourse level analysis component of MutD contributed to a gain of more than 10% in F-measure when compared against the sentence level association extraction. Our error analysis indicates that 23 of the 64 precision errors are true associations that were not captured by database curators and 68 of the 113 recall errors are caused by the absence of associated disease entities in the abstract. After adjusting for the defects in the curated database, the revised F-measure of MutD in association detection reaches 81.5%. Our quantitative analysis reveals that MutD can effectively extract protein mutation disease associations when benchmarking based on curated database records. The analysis also demonstrates that incorporating

  7. Mashup of Geo and Space Science Data Provided via Relational Databases in the Semantic Web

    Science.gov (United States)

    Ritschel, B.; Seelus, C.; Neher, G.; Iyemori, T.; Koyama, Y.; Yatagai, A. I.; Murayama, Y.; King, T. A.; Hughes, J. S.; Fung, S. F.; Galkin, I. A.; Hapgood, M. A.; Belehaki, A.

    2014-12-01

    The use of RDBMS for the storage and management of geo and space science data and/or metadata is very common. Although the information stored in tables is based on a data model and therefore well organized and structured, a direct mashup with RDF based data stored in triple stores is not possible. One solution of the problem consists in the transformation of the whole content into RDF structures and storage in triple stores. Another interesting way is the use of a specific system/service, such as e.g. D2RQ, for the access to relational database content as virtual, read only RDF graphs. The Semantic Web based -proof of concept- GFZ ISDC uses the triple store Virtuoso for the storage of general context information/metadata to geo and space science satellite and ground station data. There is information about projects, platforms, instruments, persons, product types, etc. available but no detailed metadata about the data granuals itself. Such important information, as e.g. start or end time or the detailed spatial coverage of a single measurement is stored in RDBMS tables of the ISDC catalog system only. In order to provide a seamless access to all available information about the granuals/data products a mashup of the different data resources (triple store and RDBMS) is necessary. This paper describes the use of D2RQ for a Semantic Web/SPARQL based mashup of relational databases used for ISDC data server but also for the access to IUGONET and/or ESPAS and further geo and space science data resources. RDBMS Relational Database Management System RDF Resource Description Framework SPARQL SPARQL Protocol And RDF Query Language D2RQ Accessing Relational Databases as Virtual RDF Graphs GFZ ISDC German Research Centre for Geosciences Information System and Data Center IUGONET Inter-university Upper Atmosphere Global Observation Network (Japanese project) ESPAS Near earth space data infrastructure for e-science (European Union funded project)

  8. Construction of a bibliographic information database and a web directory for the nuclear science and engineering

    Energy Technology Data Exchange (ETDEWEB)

    Oh, Jeong Hoon; Kim, Tae Whan; Lee, Ji Ho; Chun, Young Chun; Yu, An Na

    2005-11-15

    The objective of this project is to construct the bibliographic information database and the web directory in the nuclear field. Its construction is very timely and important. Because nuclear science and technology has an considerable effect all over the other sciences and technologies due to its property of giant and complex engineering. We aimed to firmly build up a basis of efficient management of the bibliographic information database and the web directory in the nuclear field. The results of this project that we achieved in this year are as follows : first, construction of the bibliographic information database in the nuclear field(the target title: 1,500 titles ; research report: 1,000 titles, full-text report: 250 titles, full-text article: 250 titles). Second, completion of construction of the web directory in the nuclear field by using SWING (the total figure achieved : 2,613 titles). We plan that we will positively give more information to the general public interested in the nuclear field and to the experts of the field through this bibliographic information database on KAERI's home page, KAERI's electronic library and other related sites as well as participation at various seminars and meetings related to the nuclear field.

  9. Teacher candidates' perceptions regarding the integration of fictional literature into elementary science instruction

    Science.gov (United States)

    Everman, Daphne Jane

    The purpose of this study was to investigate the thoughts, feelings, and beliefs held by teacher candidates (TCs) regarding the integration of fictional literature into elementary science instruction. Data were collected in the forms of a Q sort completed by two sections of TCs as an in-class activity, demographics and background information filled out by each participant, and two focus groups. The data were analyzed through a blend of Q methodology and Yin's five phase analysis approach (2011), and a constructivist framework was used to analyze the potential impact TCs' background had on their perceptions of the use of fictional literature in elementary science. Key findings indicated that while many TCs have limited backgrounds in the use of fictional literature during science and would like more information about how to use it, overall, there was strong support for its use as a science teaching tool because it makes science more approachable, builds excitement, and encourages students to become more engaged.

  10. Database Description - The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us The Rice Growth Monitoring for The Phenotypic Functional Analysis Database Description Gener...al information of database Database name The Rice Growth Monitoring for the Phenotypic Functional Analysis A...- The Rice Growth Monitoring for The Phenotypic Functional Analysis | LSDB Archive ...

  11. An overview of computational life science databases & exchange formats of relevance to chemical biology research.

    Science.gov (United States)

    Smalter Hall, Aaron; Shan, Yunfeng; Lushington, Gerald; Visvanathan, Mahesh

    2013-03-01

    Databases and exchange formats describing biological entities such as chemicals and proteins, along with their relationships, are a critical component of research in life sciences disciplines, including chemical biology wherein small information about small molecule properties converges with cellular and molecular biology. Databases for storing biological entities are growing not only in size, but also in type, with many similarities between them and often subtle differences. The data formats available to describe and exchange these entities are numerous as well. In general, each format is optimized for a particular purpose or database, and hence some understanding of these formats is required when choosing one for research purposes. This paper reviews a selection of different databases and data formats with the goal of summarizing their purposes, features, and limitations. Databases are reviewed under the categories of 1) protein interactions, 2) metabolic pathways, 3) chemical interactions, and 4) drug discovery. Representation formats will be discussed according to those describing chemical structures, and those describing genomic/proteomic entities.

  12. The Nordic prescription databases as a resource for pharmacoepidemiological research-a literature review

    DEFF Research Database (Denmark)

    Wettermark, Bjørn; Wallach-Kildemoes, Helle

    2013-01-01

    PURPOSE: All five Nordic countries have nationwide prescription databases covering all dispensed drugs, with potential for linkage to outcomes. The aim of this review is to present an overview of therapeutic areas studied and methods applied in pharmacoepidemiologic studies using data from...

  13. Productization and Commercialization of IT-Enabled Higher Education in Computer Science: A Systematic Literature Review

    Science.gov (United States)

    Kankaanpää, Irja; Isomäki, Hannakaisa

    2013-01-01

    This paper reviews research literature on the production and commercialization of IT-enabled higher education in computer science. Systematic literature review (SLR) was carried out in order to find out to what extent this area has been studied, more specifically how much it has been studied and to what detail. The results of this paper make a…

  14. The Technology of Evidence-Based Practice: Tools for Navigating the Health Sciences Literature

    Science.gov (United States)

    Townsend, Whitney

    2011-01-01

    Medical and health sciences libraries have incorporated the elements of evidence-based practice (EBP) into their reference services, instruction, and online resource development for years. While EBP focuses on the use of medical and health sciences literature in the clinical environment (i.e., making decisions about how to treat a particular…

  15. Interstitial lung disease induced by fluoxetine: Systematic review of literature and analysis of Vigiaccess, Eudravigilance and a national pharmacovigilance database.

    Science.gov (United States)

    Deidda, Arianna; Pisanu, Claudia; Micheletto, Laura; Bocchetta, Alberto; Del Zompo, Maria; Stochino, Maria Erminia

    2017-06-01

    We investigated a pulmonary adverse drug reaction possibly induced by fluoxetine, the Interstitial Lung Disease, by performing a systematic review of published case reports on this subject, a review of the World Health Organization VigiAccess database, of the European EudraVigilance database and of a national Pharmacovigilance database (Italian Pharmacovigilance Network). The research found a total of seven cases linking fluoxetine to Interstitial Lung Disease in the literature. 36 cases of interstitial lung disease related to fluoxetine were retrieved from the VigiAccess database (updated to July 2016), and 36 reports were found in EudraVigilance database (updated to June 2016). In the Italian Pharmacovigilance database (updated to August 2016), we found only one case of Interstitial Lung Disease, codified as "pulmonary disease". Our investigation shows that fluoxetine might be considered as a possible cause of Interstitial Lung Disease. In particular, although here we do not discuss the assessment of benefits and harms of fluoxetine, since this antidepressant is widely used, our review suggests that fluoxetine-induced Interstitial Lung Disease should be considered in patients with dyspnea, associated or not with dry cough, who are treated with this drug. An early withdrawn of fluoxetine could be useful to obtain a complete remission of this adverse drug reaction and special attention should be particularly devoted to long-term therapy, and to female and elderly patients. Although the spontaneous reporting system is affected by important limitations, drug post- marketing surveillance represents an important tool to evaluate the real world effectiveness and safety of drugs. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. Romanians and the Nobel Prizes for Science and Literature

    Directory of Open Access Journals (Sweden)

    Vasilica Sirbu

    2012-08-01

    Full Text Available There is much to be said about the Nobel Prizes. Numerous pages are written each year to promote, describe, analyze and criticize the prizes, their initiator and their evolution since 1901. The purpose of this study is to bring back to light from the dust of the archives information about those Romanians who were ahead of their times through their outstanding thinking and understanding of the world. Little has been written about those nominated, since it has been considered more relevant to focus on the winners. There were plentiful creative minds who only needed an opportunity to be known to the world. Famous Romanian names show up from the archives and the nomination database provided by the Nobel Institution and enable us to get a broad perspective of the nominators and the nominees. Ironically, as in the case of the Nobel Peace Prize, most of those who genuinely had a chance to win were never nominated.

  17. The XID Results Database of the XMM-Newton Survey Science Center

    Science.gov (United States)

    Michel, L.; Motch, C.

    2011-07-01

    (Written on behalf of the Survey Science Center of the XMM-Newton satellite) The Survey Science Center (SSC) of the XMM-Newton satellite has carried out several large optical campaigns aiming at the spectroscopic identification of samples of about a thousand X-ray sources at various X-ray flux levels and towards different Galactic directions. In addition, the SSC has obtained multi-color wide-field imaging for hundreds of XMM-Newton fields. Building learning samples for the statistical identification of all 2XMM sources was one of the main drivers for undertaking these observing campaigns. However, as demonstrated by the amount of papers published, these collections of data also constitute a very valuable resource which can be used for addressing a wide range of astrophysical issues. We describe the content and architecture of the XID results database recently opened by the SSC and containing a first installment of these data. The interface provides easy selection and browsing through catalogs and access to all optical images and spectral data associated with any given X-ray source as well as all relevant XMM-Newton data. The database was created using the database generator Saada and, together with the XCat-DB already deployed at the Observatoire de Strasbourg, provides another example of the flexibility, ease of use and scalability offered by Saada.

  18. A bibliometric study on chemical information and computer sciences focusing on literature of JCICS.

    Science.gov (United States)

    Onodera, N

    2001-01-01

    A bibliometric approach was used to survey the state-of-the-art of research in the field of chemical information and computer sciences (CICS). By examining the CA database for the articles abstracted under the subsection "Chemical information, documentation, and data processing", Journal of Chemical Information and Computer Sciences (JCICS) was identified to have been the top journal in this subsection for the last 30 years. Based on this result, CA subsections and controlled index terms given to JCICS articles were analyzed to see trends in subjects and topics in the CICS field during the last two decades. These analyses revealed that the subjects of research in CICS have diversified from traditional information science and computer applications to chemistry to "molecular information sciences". The SCISEARCH database was used to grasp interdependency between JCICS and other key journals and also the international nature of JCICS in its publications and citedness.

  19. Deja vu: a database of highly similar citations in the scientific literature.

    Science.gov (United States)

    Errami, Mounir; Sun, Zhaohui; Long, Tara C; George, Angela C; Garner, Harold R

    2009-01-01

    In the scientific research community, plagiarism and covert multiple publications of the same data are considered unacceptable because they undermine the public confidence in the scientific integrity. Yet, little has been done to help authors and editors to identify highly similar citations, which sometimes may represent cases of unethical duplication. For this reason, we have made available Déjà vu, a publicly available database of highly similar Medline citations identified by the text similarity search engine eTBLAST. Following manual verification, highly similar citation pairs are classified into various categories ranging from duplicates with different authors to sanctioned duplicates. Déjà vu records also contain user-provided commentary and supporting information to substantiate each document's categorization. Déjà vu and eTBLAST are available to authors, editors, reviewers, ethicists and sociologists to study, intercept, annotate and deter questionable publication practices. These tools are part of a sustained effort to enhance the quality of Medline as 'the' biomedical corpus. The Déjà vu database is freely accessible at http://spore.swmed.edu/dejavu. The tool eTBLAST is also freely available at http://etblast.org.

  20. Update History of This Database - Budding yeast cDNA sequencing project | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us Budding yeast cDNA sequencing project Update History of This Database Date Update contents 2...cription Download License Update History of This Database Site Policy | Contact Us Update Histor

  1. The Conceptions of Learning Science for Science-Mathematics Groups and Literature-Mathematics Groups in Turkey

    Science.gov (United States)

    Sadi, Ozlem; Lee, Min-Hsien

    2015-01-01

    Background: The conceptions of learning have a deep effect on the learning process, and accordingly on learning outcomes. Some researchers emphasize that conceptions of learning are domain-dependent and there should be more research in different domains (e.g. science, literature) to enhance students' understanding of conceptions of learning…

  2. Hiccups in Parkinson's disease: an analysis of cases reported in the European pharmacovigilance database and a review of the literature.

    Science.gov (United States)

    Lertxundi, U; Marquínez, A C; Domingo-Echaburu, S; Solinís, M Á; Calvo, B; Del Pozo-Rodríguez, A; García, M; Aguirre, C; Isla, A

    2017-09-01

    Some reports have suggested an association between dopamine agonists and hiccups, involuntary contractions that merit full clinical attention because they can be very debilitating. Many drugs frequently used to treat hiccups are formally contraindicated in Parkinson's disease due to their liability to worsen motor symptoms, making the treatment of hiccups problematic in this disease. The objective of the present study was to analyze all spontaneous reports of hiccups from the European Pharmacovigilance Database in patients with Parkinson's disease and/or on dopaminergic drugs. Finally, we sought to identify evidence-based recommendations on the management of hiccups in Parkinson's disease. We searched for all reports of hiccups in the European Pharmacovigilance Database (EudraVigilance) and calculated proportional reporting ratios for dopamine agonists and hiccups. We reviewed the literature on Parkinson's disease, dopamine agonists, and hiccups, searching for specific treatment recommendations for hiccups in this disease. Both rotigotine and pramipexole fulfilled the criteria to generate a safety signal. We found 32 and 13 cases of hiccups associated with dopamine agonists in EudraVigilance and the literature, respectively. There were no specific recommendations for the management of hiccups in Parkinson's disease in the clinical guidelines consulted. We have found evidence that rotigotine and pramipexole are associated with the appearance of hiccups and that this adverse reaction occurs predominantly in males. Given the scarce information available, specific recommendations are needed in clinical guidelines for the adequate management of hiccups in Parkinson's disease.

  3. An Investigation of the Interaction between Science and Technology from Literatures of Giant Magnetoresistance

    Directory of Open Access Journals (Sweden)

    Yuan-Ho Huang

    2009-12-01

    Full Text Available This study focused on the interaction between science and technology of Giant Magnetoresistance (GMR from both scientific literatures and patent documents. The sample data included 1603 nonpatent references (NPRs from 1030 patents and 160 patent documents cited by 3287 scientific literatures. The result shows that the scientific literature amounts to 10 percent of all references cited by technical documents. On the other hand, only 4 percent of the scientific literature had cited the patent documents. The time lags between patent application and paper publication from the NPRs are mostly within 4 years. However, some patents which have been issued 10 years ago were still cited by scientific literatures. Subjects including physics, engineering, chemistry and computer are mostly cited by GMR patent documents, while technologies related to semiconductor devices, magnets inductances and transformers are mostly cited by GMR scientific literatures. [Article content in Chinese

  4. Mapping the Iranian Research Literature in the Field of Traditional Medicine in Scopus Database 2010-2014.

    Science.gov (United States)

    GhaedAmini, Hossein; Okhovati, Maryam; Zare, Morteza; Saghafi, Zahra; Bazrafshan, Azam; GhaedAmini, Alireza; GhaedAmini, Mohammadreza

    2016-05-01

    The aim of this study was to provide research and collaboration overview of Iranian research efforts in the field of traditional medicine during 2010-2014. This is a bibliometric study using the Scopus database as data source, using search affiliation address relevant to traditional medicine and Iran as the search strategy. Subject and geographical overlay maps were also applied to visualize the network activities of the Iranian authors. Highly cited articles (citations >10) were further explored to highlight the impact of research domains more specifically. About 3,683 articles were published by Iranian authors in Scopus database. The compound annual growth rate of Iranian publications was 0.14% during 2010-2014. Tehran University of Medical Sciences (932 articles), Shiraz University of Medical Sciences (404 articles) and Tabriz Islamic Medical University (391 articles), were the leading institutions in the field of traditional medicine. Medicinal plants (72%), digestive system's disease (21%), basics of traditional medicine (13%), mental disorders (8%) were the major research topics. United States (7%), Netherlands (3%), and Canada (2.6%) were the most important collaborators of Iranian authors. Iranian research efforts in the field of traditional medicine have been increased slightly over the last years. Yet, joint multi-disciplinary collaborations are needed to cover inadequately described areas of traditional medicine in the country.

  5. Conference of the Society for Literature and Science. Proceedings (Los Angeles, California, November 2-5, 1995).

    Science.gov (United States)

    Labinger, Jay, Ed.

    The papers contained in this proceedings from the 1995 Society for Literature and Science Conference are organized into sections with the following themes: (1) Metaphor and Science; (2) The Technological Invasion of the Living Space; (3) Autobiographies and Biographies of Scientists; (4) Science and 19th Century Literature; (5) Visions of the…

  6. Data management and data analysis techniques in pharmacoepidemiological studies using a pre-planned multi-database approach : a systematic literature review

    NARCIS (Netherlands)

    Bazelier, Marloes T; Eriksson, Irene; de Vries, Frank; Schmidt, Marjanka K; Raitanen, Jani; Haukka, Jari; Starup-Linde, Jakob; De Bruin, Marie L; Andersen, Morten

    2015-01-01

    PURPOSE: To identify pharmacoepidemiological multi-database studies and to describe data management and data analysis techniques used for combining data. METHODS: Systematic literature searches were conducted in PubMed and Embase complemented by a manual literature search. We included

  7. License - tRNADB-CE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us tRNADB-CE License License to Use This Database Last updated : 2011/08/25 You may use this database... license terms regarding the use of this database and the requirements you must follow in using this database...-Share Alike 2.1 Japan. If you use data from this database, please be sure attribute this database as follow...is found here . With regard to this database, you are licensed to: freely access part or whole of this database..., and acquire data; freely redistribute part or whole of the data from this database; and freely create and distribute database

  8. FTP-Server for exchange, interpretation, and database-search of ion mobility spectra, literature, preprints and software

    Science.gov (United States)

    Baumbach, J. I.; Vonirmer, A.

    1995-01-01

    To assist current discussion in the field of ion mobility spectrometry, at the Institut fur Spectrochemie und angewandte Spektroskopie, Dortmund, start with 4th of December, 1994 work of an FTP-Server, available for all research groups at univerisities, institutes and research worker in industry. We support the exchange, interpretation, and database-search of ion mobility spectra through data format JCAMP-DS (Joint Committee on Atomic and Molecular Physical Data) as well as literature retrieval, pre-print, notice, and discussion board. We describe in general lines the entrance conditions, local addresses, and main code words. For further details, a monthly news report will be prepared for all common users. Internet email address for subscribing is included in document.

  9. Effects of food processing on the thermodynamic and nutritive value of foods: literature and database survey.

    Science.gov (United States)

    Prochaska, L J; Nguyen, X T; Donat, N; Piekutowski, W V

    2000-02-01

    One of the goals of our society is to provide adequate nourishment for the general population of humans. In the strictness sense, the foodstuffs which we ingest are bundles of thermodynamic energy. In our post-industrial society, food producers provide society with the bioenergetic content of foods, while stabilizing the food in a non-perishable form that enables the consumer to access foods that are convenient and nutritious. As our modern society developed, the processing of foodstuffs increased to allow consumers flexibility in their choice in which foods to eat (based on nutritional content and amount of post-harvest processing). The thermodynamic energy content of foodstuffs is well documented in the literature by the use of bomb calorimetry measurements. Here, we determine the effects of processing (in most cases by the application of heat) on the thermodynamic energy content of foods in order to investigate the role of processing in daily nutritional needs. We also examine which processing procedures affect the nutritive quality (vitamin and mineral content) and critically assess the rational, advantages and disadvantages of additives to food. Finally, we discuss the role of endogenous enzymes in foods not only on the nutritive quality of the food but also on the freshness and flavor of the food. Our results show that a significant decrease in thermodynamic energy content occurs in fruits, vegetables, and meat products upon processing that is independent of water content. No significant change in energy content was observed in cereals, sugars, grains, fats and oils, and nuts. The vitamin content of most foods was most dramatically decreased by canning while smaller effects were observed upon blanching and freezing. We found that most food additives had very little effect on thermodynamic energy content due to their presence in minute quantities and that most were added to preserve the foodstuff or supplement its vitamin content. The endogenous food enzymes

  10. Publication Anxiety: Emotion and the Stages of Publishing in the Library and Information Science Literature

    Science.gov (United States)

    Sullivan, Doreen

    2012-01-01

    Although instruction in writing for Library and Information Science (LIS) publication is becoming more prevalent, emotions inherent in the publishing cycle are seldom discussed. Through a review of the literature this article investigates how LIS writers can develop their technical skills in publishing scholarly articles, and then looks at…

  11. Raising Critical Issues in the Analysis of Gender and Science in Children's Literature

    Science.gov (United States)

    Martin, Sonya N.; Siry, Christina A.

    2009-01-01

    Trevor Owens' paper provides a critique of the role of gender and authority in selected children's books that presented biographies of Albert Einstein and Marie Curie. In the context of discussing Trevor's (2009) article about children's literature, this forum explores issues related to the (a) representation and construction of gender, science,…

  12. Problem-Based Learning in K-8 Mathematics and Science Education: A Literature Review

    Science.gov (United States)

    Merritt, Joi; Lee, Mi Yeon; Rillero, Peter; Kinach, Barbara M.

    2017-01-01

    This systematic literature review was conducted to explore the effectiveness of problem-based and project-based learning (PBL) implemented with students in early elementary to grade 8 (ages 3-14) in mathematics and science classrooms. Nine studies met the following inclusion criteria: (a) focus on PBL, (b) experimental study, (c) kindergarten to…

  13. Geoscience on television: a review of science communication literature in the context of geosciences

    Science.gov (United States)

    Hut, Rolf; Land-Zandstra, Anne M.; Smeets, Ionica; Stoof, Cathelijne R.

    2016-06-01

    Geoscience communication is becoming increasingly important as climate change increases the occurrence of natural hazards around the world. Few geoscientists are trained in effective science communication, and awareness of the formal science communication literature is also low. This can be challenging when interacting with journalists on a powerful medium like TV. To provide geoscience communicators with background knowledge on effective science communication on television, we reviewed relevant theory in the context of geosciences and discuss six major themes: scientist motivation, target audience, narratives and storytelling, jargon and information transfer, relationship between scientists and journalists, and stereotypes of scientists on TV. We illustrate each theme with a case study of geosciences on TV and discuss relevant science communication literature. We then highlight how this literature applies to the geosciences and identify knowledge gaps related to science communication in the geosciences. As TV offers a unique opportunity to reach many viewers, we hope this review can not only positively contribute to effective geoscience communication but also to the wider geoscience debate in society.

  14. License - Nikkaji-InChI Mapping Table | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Nikkaji-InChI Mapping Table License License to Use This Database Last updated : 2015/05/22 You may use this database...ense specifies the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative C...ommons Attribution 2.1 Japan . If you use data from this database, please be sure attribute this database as... . With regard to this database, you are licensed to: freely access part or whole of this database, and acqu

  15. License - RGP estmap2001 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP estmap2001 License License to Use This Database Last updated : 2015/04/02 You may use this database...s the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attrib...ution-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as ... the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database, you ar

  16. License - KAIKOcDNA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us KAIKOcDNA License License to Use This Database Last updated : 2014/10/08 You may use this database... license terms regarding the use of this database and the requirements you must follow in using this database...-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follo...e Alike 2.1 Japan is found here . With regard to this database, you are licensed to: freely access part or whole of this database..., and acquire data; freely redistribute part or whole of the data from this database; a

  17. License - GenLibi | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us GenLibi License License to Use This Database Last updated : 2014/03/25 You may use this database...icense terms regarding the use of this database and the requirements you must follow in using this database. The license for this dat...hare Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follows...se, you are licensed to: freely access part or whole of this database, and acquire ...data; freely redistribute part or whole of the data from this database; and freely create and distribute database

  18. License - ChIP-Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us ChIP-Atlas License License to Use This Database Last updated : 2016/06/24 You may use this database...e license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attributio...n-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database...national is found here . With regard to this database, you are licensed to: freely access part or whole of this database

  19. Educational services in health sciences libraries: a content analysis of the literature, 1987-1994.

    Science.gov (United States)

    Dimitroff, A

    1995-01-01

    The recent literature (1987-1994) describing educational services of health sciences librarians was analyzed for content. Variables examined included publication journal, country, type of article (description, review, or advocacy), target audience of education services, and subject of article. Articles that reported research results also were identified. Of 123 articles studied, 82.1% were descriptive, 14.6% advocacy, and 3.3% reviews. Library users were the primary target audience (85.1%), an increase over the percentage reported in an earlier study of the 1975-1986 literature. Librarians were the target audience in 12.8% of the articles, a decrease from the previous study's findings. There was an increase in educational offerings by academic libraries, which sponsored 83.2% of programs, while hospital libraries' sponsorship decreased to 5% of programs reported in the literature. The analysis identified a major need for research related to educational activities in health sciences libraries. PMID:8547899

  20. Update History of This Database - BodyParts3D | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us BodyParts... (Release 2.0) is updated. 2010/03/29 BodyParts3D English archive site is opened. 2009/02/09 3D data (Releas... Policy | Contact Us Update History of This Database - BodyParts3D | LSDB Archive ...

  1. Download - GenLibi | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...access [here]. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Download - GenLibi | LSDB Archive ...

  2. License - Q-TARO | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...thout notice. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us License - Q-TARO | LSDB Archive ...

  3. Mapping Information - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Search Image Search Home About Archive Update History Data List Contact us fRNAdb Mapping Information...Database Database Description Download License Update History of This Database Site Policy | Contact Us Mapping

  4. Sample ontology, GOstat and ontology term enrichment - FANTOM5 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...out This Database Database Description Download License Update History of This Database Site Policy | Contac

  5. The conceptions of learning science for science-mathematics groups and literature-mathematics groups in Turkey

    Science.gov (United States)

    Sadi, Ozlem; Lee, Min-Hsien

    2015-05-01

    Background:The conceptions of learning have a deep effect on the learning process, and accordingly on learning outcomes. Some researchers emphasize that conceptions of learning are domain-dependent and there should be more research in different domains (e.g. science, literature) to enhance students' understanding of conceptions of learning science. Purpose:The purpose of this research was to examine and compare science-major and literature-major students' conceptions of learning science (COLS). Also, gender differences in COLS were examined for two majors. Sample:The sample for this study comprised of 503 high school students in 10th, 11th, and 12th grades (244 females, 259 males) in a district of Karaman in Turkey. Design and methods:The questionnaire, the Conceptions of Learning Science (COLS), developed by Lee, Johanson, and Tsai, was used to identify students' COLS. The data obtained via the questionnaire were analyzed by means of SPSS 15.0 statistical software. Exploratory and confirmatory factor analyses were used to examine the factor structure of the questionnaire. Then, two-way MANOVA was conducted to compare the mean scores regarding the students' majors and genders in terms of the factors of COLS. Results:The results of the study revealed that students in Science-Mathematics field tended to express more agreement with lower-level COLS, such as learning science by 'memorizing,' 'preparing for exams,' and 'increasing one's knowledge' than those in Literature-Mathematics field. Second, more female students conceptualized learning science as 'increasing one's knowledge,' 'applying,' 'understanding,' or 'seeing in a new way' than male students in both majors. Third, the findings of two-way MANOVA, in general, revealed that there were significant differences in the average scores of conceptions of 'memorizing,' 'calculating and practicing,' and 'increasing one's knowledge' between two majors. Furthermore, there was a statistically significant mean difference

  6. Core Data of Yeast Interacting Proteins Database (Annotation Updated Version) - Yeast Interacting Proteins Database | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available hod As the indicator of reliability of the interactions obtained by the experiment, the literature informati...(Fields, S. & Song, O. K. (1989) Nature (London) 340, 245-246.) Data analysis met

  7. License - TMBETA-GENOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us TMBETA-GENOME License License to Use This Database Last updated : 2015/03/09 You may use this database... the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribu...tion-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as f....1 Japan . The summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database

  8. License - dbQSNP | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us dbQSNP License License to Use This Database Last updated : 2017/02/16 You may use this database...cense terms regarding the use of this database and the requirements you must follow in using this database. The license for this data...are Alike 4.0 International . If you use data from this database, please be sure attribute this database as ... ... . The summary of the Creative Commons Attribution-Share Alike 4.0 International is found here . With regard to this database..., you are licensed to: freely access part or whole of this database, and acquire data; fre

  9. License - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us fRNAdb License License to Use This Database Last updated : 2016/03/29 You may use this database...cense terms regarding the use of this database and the requirements you must follow in using this database. The license for this data...are Alike 4.0 International . If you use data from this database, please be sure attribute this database as ...ve Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, you are l...icensed to: freely access part or whole of this database, and acquire data; freely redistribute part or whol

  10. License - D-HaploDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us D-HaploDB License License to Use This Database Last updated : 2011/08/25 You may use this database... license terms regarding the use of this database and the requirements you must follow in using this database...-Share Alike 2.1 Japan. If you use data from this database, please be sure attribute this database as follow...ry of the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database..., you are licensed to: freely access part or whole of this database, and acquire dat

  11. License - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap98 License License to Use This Database Last updated : 2015/02/12 You may use this database...e license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attributio...n-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as foll...on-Share Alike 2.1 Japan is found here . With regard to this database, you are licensed to: freely access part or whole of this datab

  12. License - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us NBDC NikkajiRDF License License to Use This Database Last updated : 2015/05/29 You may use this database...es the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attri...bution 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: NB... the Creative Commons Attribution 2.1 Japan is found here . With regard to this database

  13. License - ClEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us ClEST License License to Use This Database Last updated : 2012/05/22 You may use this database...ense terms regarding the use of this database and the requirements you must follow in using this database. The license for this datab...re Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as follows: ...tive Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database..., you are licensed to: freely access part or whole of this database, and acquire data; freely redi

  14. License - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us TogoTV License License to Use This Database Last updated : 2017/05/12 You may use this database...cense terms regarding the use of this database and the requirements you must follow in using this database. The license for this data...0 International . If you use data from this database, please be sure attribute this database as follows: Tog...on 4.0 International is found here . With regard to this database, you are licens...ed to: freely access part or whole of this database, and acquire data; freely redistribute part or whole of the data from this databa

  15. License - RED II INAHO | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RED II INAHO License License to Use This Database Last updated : 2016/01/14 You may use this database...the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribut...ion-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database...of the Creative Commons Attribution-Share Alike 4.0 International is found here . With regard to this database

  16. License - RGP gmap2000 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap2000 License License to Use This Database Last updated : 2015/03/10 You may use this database...the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribut...ion-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database as fo...y of the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database, yo

  17. License - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us MicrobeDB.jp License License to Use This Database Last updated : 2017/06/29 You may use this database...the license terms regarding the use of this database and the requirements you must follow in using this database.... The license for this database is specified in the Creative Commons Attribut...ion-Share Alike 4.0 International . If you use data from this database, please be sure attribute this database... Creative Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, yo

  18. License - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us DB-SPIRE License License to Use This Database Last updated : 2017/02/16 You may use this database...license terms regarding the use of this database and the requirements you must follow in using this database...Share Alike 4.0 International . If you use data from this database, please be sure attribute this database a...eative Commons Attribution-Share Alike 4.0 International is found here . With regard to this database, you a...re licensed to: freely access part or whole of this database, and acquire data; freely redistribute part or

  19. Visibility of healthcare research institutes through the Web of Science database.

    Science.gov (United States)

    González-Albo, B; Moreno-Solano, L; Aparicio, J; Bordons, M

    2017-12-01

    The strategic importance of healthcare research institutes (HRIs) in health sciences research in Spain has motivated this analysis of the feasibility of studing their contribution to the Spanish scientific output through their presence as a signatory institution in the publications. We identified the output of the HRIs in the Web of Science database, comparing their observed output (the institutes are explicitly listed in the authors' workplace) and potential output (estimated based on the linked hospitals). The studies based on scientific publications do not help us reliably identify the contribution of the HRIs because their observed production is much lower than the potential output, although their visibility tends to increase over time. This article highlights the importance of HRI members including the institute among their work addresses to increase the visibility of these organisations and to facilitate studies aimed at assessing their activity in the national and international context. Copyright © 2017 Elsevier España, S.L.U. and Sociedad Española de Medicina Interna (SEMI). All rights reserved.

  20. Construction of a bibliographic information database for the nuclear science and engineering (VIII)

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Tae Whan; Kim, Soon Ja; Kim, Young Min; Oh, Jeong Hun; Choi, Kwang [Korea Atomic Energy Research Institute, Taejon (Korea)

    1998-12-01

    The major goal of this project is to construct a database in nuclear science and engineering information materials, support the R and D activities of users in this field, finally to support KRISTAL(Korea Research Information for Science ad Technology Access Line)'s BD through the KREONet (Korea Research Environment Open Network), as one of the five national information networks. The contents of this project are as follows : 1) Materials selection and collection, 2) Indexing and abstract preparation, 3) Data input and transmission, and 4) document delivery service. In this seventh year, 35,000 record as total of inputted data, are added to the existing SATURN DB using the input system. These records are covered with the articles of nuclear-related core journals, proceedings, seminars, and research reports, etc. And using the Web, this project was important for users to get their needed information itself and to receive the materials of online requested information. And then it will give the chance users not only to promote the effectiveness of R and D activities, but also to obviate the duplicated research works. 1 tab. (Author)

  1. Construction of a bibliographic information database for the Nuclear Science and Engineering (IX)

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Tae Whan; Oh, Jeong Hun; Choi, Kwang; Keum, Jong Yong [Korea Atomic Energy Research Institute, Taejon (Korea)

    1999-12-01

    The major goal of this project is to construct a database in nuclear science and engineering information materials, support the R and D activities of users in this field, finally to support KRISTAL(Korea Research Information for Science and Technology Access Line)'s DB through the KREONet(Korea Research Environment Open Network), as one of the five national information networks. The contents of this project are as follows: 1) Materials selection and collection, 2) Indexing and abstract preparation, 3) Data input and transmission, and 4) document delivery service. In this seventh year, 40,000 records, as total of inputted data, are added to the existing SATURN DB. These records are covered with the articles of nuclear-related core journals, proceedings, seminars, and research reports, etc. And using the Web, this project was important for users to get their needed information itself and to receive the materials of online requested information. And then it will give the chance users not only to promote the the effectiveness of R and D activities, but also to obviate the duplicated research works. 1 fig., 1 tab. (Author)

  2. Construction of a bibliographic information database for the nuclear science and engineering (X)

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Tae Whan; Lee, Ji Ho; Oh, Jeong Hun; Choi, Kwang; Chun, Young Chun; Yoo, Jae Bok; Yu, Anna [Korea Atomic Energy Research Institute, Taejeon (Korea)

    2000-12-01

    The major goal of this project is to construct a database in nuclear science and engineering information materials, support the R and D activities of users in this field, finally to support KRISTAL(Korea Research Information for Science and Technology Access Line)'s DB through the KREONet(Korea Research Environment Open Network), as one of the five national information networks.The contents of this project are as follows: 1) Materials selection and collection, 2) Indexing and abstract preparation, 3) Data input and transmission, and 4) document delivery service. In this Tenth year, 30,500 records ,as total of inputted data, are added to the existing SATURN DB. These records are covered with the articles of nuclear-related core journals, proceedings, seminars, and research reports, etc. And using the Web, this project was important for users to get their needed information itself and to receive the materials of online requested information . And then it will give the chance users not only to promote the effectiveness of R and D activities, but also to obviate the duplicated research works. 2 tabs. (Author)

  3. Construction of a bibliographic information database for the nuclear science and engineering

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Tae Whan; Kim, Soon Ja; Choi, Kwang [Korea Atomic Energy Reasech Institute, Taejon (Korea)

    1997-12-01

    The major goal of this project is to construct a database in nuclear science and engineering information materials, support the R and D activities of users in this field, finally to support KRISTAL(Korea Research Information for Science and Technology Access Line)'s DB through the KREONet(Korea Research Environment Open Network), as one of the five national information networks. The contents of this project are as follows: (1) Materials selection and collection, (2) Indexing and abstract preparation, (3) Data input and transmission, and (4) document delivery service. In this seventh year, 45000 records, as total of inputted data, are added to the existing SATURN DB. These records are covered with the articles of nuclear-related core journals, proceedings, seminars, and research reports, etc. And using the Web, this project was important for users to get their needed information itself and to receive the materials of online requested information. And then it will give the chance users not only to promote the effectiveness of R and D activities, but also to obviate the duplicated research works. (author). 1 fig., 1 tab.

  4. "Science in Tales": Analysis of the images of scientist in young people's fictional literature

    CERN Document Server

    Pujalte, Alejandro; Aduriz-Bravo, Agustin

    2013-01-01

    In the research field on the "images of scientists" that appear in fictional literature, we focus on a set of tales produced by students of secondary school. Our aim is to connect some traits of the stereotypical scientist that appear in those texts with the traits underlying other cultural productions, since those productions may constitute the probable source of the stereotype. Many common representations of the scientist emerge from an image of science that is inadequate from the point of view of science teaching. It correlates to a lack of interest towards science courses. This lack of interest would contribute to stagnation in the number of students pursuing science and technology careers in Ibero-America in general and especially in Argentina.

  5. Visualization Tools and Techniques for Search and Validation of Large Earth Science Spatial-Temporal Metadata Databases

    Science.gov (United States)

    Baskin, W. E.; Herbert, A.; Kusterer, J.

    2014-12-01

    Spatial-temporal metadata databases are critical components of interactive data discovery services for ordering Earth Science datasets. The development staff at the Atmospheric Science Data Center (ASDC) works closely with satellite Earth Science mission teams such as CERES, CALIPSO, TES, MOPITT, and CATS to create and maintain metadata databases that are tailored to the data discovery needs of the Earth Science community. This presentation focuses on the visualization tools and techniques used by the ASDC software development team for data discovery and validation/optimization of spatial-temporal objects in large multi-mission spatial-temporal metadata databases. The following topics will be addressed: Optimizing the level of detail of spatial temporal metadata to provide interactive spatial query performance over a multi-year Earth Science mission Generating appropriately scaled sensor footprint gridded (raster) metadata from Level1 and Level2 Satellite and Aircraft time-series data granules Performance comparison of raster vs vector spatial granule footprint mask queries in large metadata database and a description of the visualization tools used to assist with this analysis

  6. License - AcEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us AcEST License to Use This Database Last updated : 2010/02/15 You may use this database in co...he Standard License specifies the license terms regarding the use of this database and the requirements you ...must follow in using this database. The Additional License specifies those items ... License The Standard License for this database is the license specified in the Creative Commons Attribution...-Share Alike 2.1 Japan . If you use data from this database, please be sure attribute this database

  7. Exploring first-grade teachers' use of children's literature in science instruction

    Science.gov (United States)

    Rish, Melany

    The purpose of this study is to explore, through the use of case studies, two early childhood teachers' methods of teaching science using children's literature and how it effects their students' conceptions of science concepts. Four research questions guided this study: how do teachers use children's literature to address science concepts during instruction? how are children's understandings of science concepts affected when teachers use children's trade books that provide inaccurate information on a particular topic/concept? how are children's understandings of a particular science concept clarified when teachers address a misconception presented on the topic in a children's book? when children have misconceptions about science concepts, how are those misconceptions corrected? Data sources included classroom observations, teacher interviews, student interviews, and document surveys. All interviews were transcribed, and field notes were taken and expanded on. These interview transcriptions and expanded field notes were coded; patterns and themes were identified. A comparison of the experience of these two classrooms was made with the research literature. Recurrent themes confirmed from multiple data sources provide validity for this study (triangulation). The teacher participants in this study chose books that contained many inaccuracies. The teachers utilized open-ended questions and discussion to address science concepts during instruction while using children's literature. After sharing the stories with students, the teachers almost always extended the book sharing experience with additional activities to reinforce concepts. Though the teachers used books with inaccuracies, it was difficult to distinguish the influence of the children's book, especially the fiction stories, since many of the first grade students are still learning to distinguish reality and fantasy. The results from this study do not provide enough information to say whether or not it is the

  8. SwissProt search result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available a.nbdc00120-019 Description of data contents Results of blastx searches against the Swiss-Prot database Data...biosciencedbc.jp/togodb/view/kome_swissprot_search_result#en Data acquisition method The Swiss-Prot database... was used for the searches. Data analysis method Performed blastx searches against the Swiss-Prot database. ...the protein in the Swiss-Prot database ENTRY_NAME Name of the protein in the Swiss-Prot database

  9. License - BodyParts3D | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us BodyParts...on-Share Alike 2.1 Japan. If you use data from this database, please be sure attribute this database as follows: BodyParts... +81-3-5841-8090 E-mail : About This Database Database Description Download License Update History of This Database Site Policy | Contact Us License - BodyParts3D | LSDB Archive ...

  10. Identification of organization name variants in large databases using rule-based scoring and clustering: With a case study on the web of science database

    NARCIS (Netherlands)

    E.A.M. Caron (Emiel); H.A.M. Daniels (Hennie)

    2016-01-01

    textabstractThis research describes a general method to automatically clean organizational and business names variants within large databases, such as: patent databases, bibliographic databases, databases in business information systems, or any other database containing organisational name

  11. Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database.

    Science.gov (United States)

    Davis, Allan Peter; Wiegers, Thomas C; Johnson, Robin J; Lay, Jean M; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Sciaky, Daniela; Murphy, Cynthia Grondin; Mattingly, Carolyn J

    2013-01-01

    The Comparative Toxicogenomics Database (CTD; http://ctdbase.org/) is a public resource that curates interactions between environmental chemicals and gene products, and their relationships to diseases, as a means of understanding the effects of environmental chemicals on human health. CTD provides a triad of core information in the form of chemical-gene, chemical-disease, and gene-disease interactions that are manually curated from scientific articles. To increase the efficiency, productivity, and data coverage of manual curation, we have leveraged text mining to help rank and prioritize the triaged literature. Here, we describe our text-mining process that computes and assigns each article a document relevancy score (DRS), wherein a high DRS suggests that an article is more likely to be relevant for curation at CTD. We evaluated our process by first text mining a corpus of 14,904 articles triaged for seven heavy metals (cadmium, cobalt, copper, lead, manganese, mercury, and nickel). Based upon initial analysis, a representative subset corpus of 3,583 articles was then selected from the 14,094 articles and sent to five CTD biocurators for review. The resulting curation of these 3,583 articles was analyzed for a variety of parameters, including article relevancy, novel data content, interaction yield rate, mean average precision, and biological and toxicological interpretability. We show that for all measured parameters, the DRS is an effective indicator for scoring and improving the ranking of literature for the curation of chemical-gene-disease information at CTD. Here, we demonstrate how fully incorporating text mining-based DRS scoring into our curation pipeline enhances manual curation by prioritizing more relevant articles, thereby increasing data content, productivity, and efficiency.

  12. Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database

    Science.gov (United States)

    Johnson, Robin J.; Lay, Jean M.; Lennon-Hopkins, Kelley; Saraceni-Richards, Cynthia; Sciaky, Daniela; Murphy, Cynthia Grondin; Mattingly, Carolyn J.

    2013-01-01

    The Comparative Toxicogenomics Database (CTD; http://ctdbase.org/) is a public resource that curates interactions between environmental chemicals and gene products, and their relationships to diseases, as a means of understanding the effects of environmental chemicals on human health. CTD provides a triad of core information in the form of chemical-gene, chemical-disease, and gene-disease interactions that are manually curated from scientific articles. To increase the efficiency, productivity, and data coverage of manual curation, we have leveraged text mining to help rank and prioritize the triaged literature. Here, we describe our text-mining process that computes and assigns each article a document relevancy score (DRS), wherein a high DRS suggests that an article is more likely to be relevant for curation at CTD. We evaluated our process by first text mining a corpus of 14,904 articles triaged for seven heavy metals (cadmium, cobalt, copper, lead, manganese, mercury, and nickel). Based upon initial analysis, a representative subset corpus of 3,583 articles was then selected from the 14,094 articles and sent to five CTD biocurators for review. The resulting curation of these 3,583 articles was analyzed for a variety of parameters, including article relevancy, novel data content, interaction yield rate, mean average precision, and biological and toxicological interpretability. We show that for all measured parameters, the DRS is an effective indicator for scoring and improving the ranking of literature for the curation of chemical-gene-disease information at CTD. Here, we demonstrate how fully incorporating text mining-based DRS scoring into our curation pipeline enhances manual curation by prioritizing more relevant articles, thereby increasing data content, productivity, and efficiency. PMID:23613709

  13. Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science.

    Science.gov (United States)

    Minkiewicz, Piotr; Darewicz, Małgorzata; Iwaniak, Anna; Bucholska, Justyna; Starowicz, Piotr; Czyrko, Emilia

    2016-12-06

    Internet databases of small molecules, their enzymatic reactions, and metabolism have emerged as useful tools in food science. Database searching is also introduced as part of chemistry or enzymology courses for food technology students. Such resources support the search for information about single compounds and facilitate the introduction of secondary analyses of large datasets. Information can be retrieved from databases by searching for the compound name or structure, annotating with the help of chemical codes or drawn using molecule editing software. Data mining options may be enhanced by navigating through a network of links and cross-links between databases. Exemplary databases reviewed in this article belong to two classes: tools concerning small molecules (including general and specialized databases annotating food components) and tools annotating enzymes and metabolism. Some problems associated with database application are also discussed. Data summarized in computer databases may be used for calculation of daily intake of bioactive compounds, prediction of metabolism of food components, and their biological activity as well as for prediction of interactions between food component and drugs.

  14. Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules—Search Options and Applications in Food Science

    Directory of Open Access Journals (Sweden)

    Piotr Minkiewicz

    2016-12-01

    Full Text Available Internet databases of small molecules, their enzymatic reactions, and metabolism have emerged as useful tools in food science. Database searching is also introduced as part of chemistry or enzymology courses for food technology students. Such resources support the search for information about single compounds and facilitate the introduction of secondary analyses of large datasets. Information can be retrieved from databases by searching for the compound name or structure, annotating with the help of chemical codes or drawn using molecule editing software. Data mining options may be enhanced by navigating through a network of links and cross-links between databases. Exemplary databases reviewed in this article belong to two classes: tools concerning small molecules (including general and specialized databases annotating food components and tools annotating enzymes and metabolism. Some problems associated with database application are also discussed. Data summarized in computer databases may be used for calculation of daily intake of bioactive compounds, prediction of metabolism of food components, and their biological activity as well as for prediction of interactions between food component and drugs.

  15. References that anyone can edit: review of Wikipedia citations in peer reviewed health science literature.

    Science.gov (United States)

    Bould, M Dylan; Hladkowicz, Emily S; Pigford, Ashlee-Ann E; Ufholz, Lee-Anne; Postonogova, Tatyana; Shin, Eunkyung; Boet, Sylvain

    2014-03-06

    To examine indexed health science journals to evaluate the prevalence of Wikipedia citations, identify the journals that publish articles with Wikipedia citations, and determine how Wikipedia is being cited. Bibliometric analysis. Publications in the English language that included citations to Wikipedia were retrieved using the online databases Scopus and Web of Science. To identify health science journals, results were refined using Ulrich's database, selecting for citations from journals indexed in Medline, PubMed, or Embase. Using Thomson Reuters Journal Citation Reports, 2011 impact factors were collected for all journals included in the search. Resulting citations were thematically coded, and descriptive statistics were calculated. 1433 full text articles from 1008 journals indexed in Medline, PubMed, or Embase with 2049 Wikipedia citations were accessed. The frequency of Wikipedia citations has increased over time; most citations occurred after December 2010. More than half of the citations were coded as definitions (n = 648; 31.6%) or descriptions (n=482; 23.5%). Citations were not limited to journals with a low or no impact factor; the search found Wikipedia citations in many journals with high impact factors. Many publications are citing information from a tertiary source that can be edited by anyone, although permanent, evidence based sources are available. We encourage journal editors and reviewers to use caution when publishing articles that cite Wikipedia.

  16. License - Gene Name Thesaurus | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Gene Name Thesaurus License to Use This Database Last updated : 2012/01/17 The license for this database... is the license specified in the Creative Commons Attribution-Share Alike 2.1 Japan . If you use data from this database..., please be sure attribute this database as follows: Gene Name Thesaurus, © The Data...he summary of the Creative Commons Attribution-Share Alike 2.1 Japan is found here . With regard to this database..., you are licensed to: freely access part or whole of this database, and acquire data; freely redistrib

  17. License - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Open TG-GATEs License License to Use This Database Last updated : 2012/05/24 You may use this database...scribed below. The Standard License specifies the license terms regarding the use of this database and the r...equirements you must follow in using this database. The Additional License specif...icense. Standard License The Standard License for this database is the license specified in the Creative Com...mons Attribution-Share Alike 2.1 Japan . If you use data from this database, plea

  18. Effective use of forensic science in volume crime investigations: identifying recurring themes in the literature.

    Science.gov (United States)

    Ludwig, Anika; Fraser, Jim

    2014-01-01

    New scientific, technological and legal developments, particularly the introduction of national databases for DNA and fingerprints, have led to increased use of forensic science in the investigation of crime. There is an assumption, and in some instances specific assertions, that such developments bring improvements either in broad criminal justice terms or more narrowly in terms of economic or practical efficiencies. The underlying presumption is that the new technological opportunities will be understood and effectively implemented. This research investigates whether such increases in activity have also been accompanied by improvements in the effective use of forensic science. A systematic review of thirty-six reports published (predominantly in England and Wales) since the 1980s, which have considered the use of forensic science in the investigation of volume crimes, was carried out. These reports have identified a number of recurrent themes that influenced how effectively forensic science was used in investigations. The themes identified included forensic knowledge and training of investigators, communication and information exchange between specialists and investigators, timeliness of forensic results, interagency relationships and deployment of crime scene examiner resources. The research findings suggest that these factors continue to hinder the effective use of forensic science despite technological advances and this paper considers their potential causes. © 2013.

  19. JournalBase - A Comparative International Study of Scientific Journal Databases in the Social Sciences and the Humanities (SSH)

    OpenAIRE

    Dassa, Michèle; Kosmopoulos, Christine; Pumain, Denise

    2010-01-01

    Presented for the first time, a comparative table of the contents of the databases that list the journals in the Social Sciences and the Humanities (SSH)named JournalBase has been published, in June 2009, in Cybergeo. The study covers the AHCI and the SSCI of the Web of Science (published by Thomson Reuters) and Scopus (published by Elsevier), as well as the European Reference Index for Humanities (ERIH) (published by the European Science Foundation) and the lists of the French Agence pour l’...

  20. Towards virtual knowledge broker services for semantic integration of life science literature and data sources.

    Science.gov (United States)

    Harrow, Ian; Filsell, Wendy; Woollard, Peter; Dix, Ian; Braxenthaler, Michael; Gedye, Richard; Hoole, David; Kidd, Richard; Wilson, Jabe; Rebholz-Schuhmann, Dietrich

    2013-05-01

    Research in the life sciences requires ready access to primary data, derived information and relevant knowledge from a multitude of sources. Integration and interoperability of such resources are crucial for sharing content across research domains relevant to the life sciences. In this article we present a perspective review of data integration with emphasis on a semantics driven approach to data integration that pushes content into a shared infrastructure, reduces data redundancy and clarifies any inconsistencies. This enables much improved access to life science data from numerous primary sources. The Semantic Enrichment of the Scientific Literature (SESL) pilot project demonstrates feasibility for using already available open semantic web standards and technologies to integrate public and proprietary data resources, which span structured and unstructured content. This has been accomplished through a precompetitive consortium, which provides a cost effective approach for numerous stakeholders to work together to solve common problems. Copyright © 2012 Elsevier Ltd. All rights reserved.

  1. Download - eSOL | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...Database Description Download License Update History of This Database Site Policy | Contact Us Download - eSOL | LSDB Archive ...

  2. mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences

    National Research Council Canada - National Science Library

    Ingman, Max; Gyllensten, Ulf

    2006-01-01

    ..., as well as for population genetics studies. Human Mitochondrial Genome Database (mtDB) (http://www.genpat.uu.se/mtDB) has provided a comprehensive database of complete human mitochondrial genomes since early 2000...

  3. License - Budding yeast cDNA sequencing project | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available ional License described below. The Standard License specifies the license terms regarding the use of this database and the requiremen...ts you must follow in using this database. The Additiona

  4. License - Dicty_cDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available distributing any derivative work based on part of whole of the data from this database. 2. When you conduct research... by using this database, and describe the research results in an article or paper, you always need

  5. Oracle Database 10g: a platform for BLAST search and Regular Expression pattern matching in life sciences.

    Science.gov (United States)

    Stephens, Susie M; Chen, Jake Y; Davidson, Marcel G; Thomas, Shiby; Trute, Barry M

    2005-01-01

    As database management systems expand their array of analytical functionality, they become powerful research engines for biomedical data analysis and drug discovery. Databases can hold most of the data types commonly required in life sciences and consequently can be used as flexible platforms for the implementation of knowledgebases. Performing data analysis in the database simplifies data management by minimizing the movement of data from disks to memory, allowing pre-filtering and post-processing of datasets, and enabling data to remain in a secure, highly available environment. This article describes the Oracle Database 10g implementation of BLAST and Regular Expression Searches and provides case studies of their usage in bioinformatics. http://www.oracle.com/technology/software/index.html.

  6. Movie collection - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ols. Data file File name: movie File URL: ftp://ftp.biosciencedbc.jp/archive/togotv/movie/ File size: 200 GB...ata entries 1169 entries - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Movie collection - TogoTV | LSDB Archive ...

  7. cDNA table - RPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ile URL: ftp://ftp.biosciencedbc.jp/archive/rpd/LATEST/rpd_cdna.zip File size: 15 KB Simple search URL http:...age About This Database Database Description Download License Update History of This Database Site Policy | Contact Us cDNA table - RPD | LSDB Archive ...

  8. Hematology - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ivo tests. Data file File name: open_tggates_hematology.zip File URL: ftp://ftp.biosciencedbc.jp/archive/ope...en About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Hematology - Open TG-GATEs | LSDB Archive ...

  9. Blocks search result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 00120-022 Description of data contents Results of motif searches against the Blocks Database Data file File ...togodb/view/kome_blocks_search_result#en Data acquisition method Blocks Database Version 14.0 (October 2003) was used for the searche...s. Data analysis method Performed motif searches against the Blocks Database using

  10. Complex Model Structure - SAHG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available lex Model Structure Data detail Data name Complex Model Structure DOI 10.18908/lsdb...ntries - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Complex Model Structure - SAHG | LSDB Archive ... ...switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us SAHG Comp

  11. Molecular Formula and Molecular Weight - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us NBDC NikkajiRDF Molecular Formula and Molecular Weight Data detail Data name Molecular Formula and Molecular...cular Formula and Molecular Weight - NBDC NikkajiRDF | LSDB Archive ... ...329 triples - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Mole

  12. About Libraries - AcEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us AcEST About Libraries Data detail Data name About Libraries DOI 10.18908/lsdba.nbdc00839-005...s Database Database Description Download License Update History of This Database Site Policy | Contact Us About Libraries - AcEST | LSDB Archive ...

  13. Cell sample - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Open...y About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Cell sample - Open TG-GATEs | LSDB Archive ...

  14. Memsat search result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...rection of 5' end About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Memsat search result - KOME | LSDB Archive ...

  15. Raw Data (FASTA format) - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... (Mar. 31, 1997) About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Raw Data (FASTA format) - PLACE | LSDB Archive ...

  16. An online nursing leadership literature centre at the University of Manitoba Health Sciences Libraries.

    Science.gov (United States)

    Barrett, Patricia

    2009-09-01

    Decades of hospital restructuring in Canada resulted in significant reductions of nursing leadership positions and altered a nursing infrastructure important for guiding patient care. The importance of acquiring nursing leadership skills to address the negative effects of restructuring is advocated by Canadian nursing bodies. To describe a service innovation for a nursing community. The librarians of the University of Manitoba Health Sciences Libraries (UMHSL) created an online nursing leadership literature centre to support a leadership programme launched by the Nursing Leadership Council (NLC) of the Winnipeg Regional Health Authority. The article will contribute to the body of literature about health library services for nurses. The creation of the service is described. A literature search was undertaken to determine what services have been implemented by librarians for nursing leadership programmes, as well as to review the literature with regard to contributions made by librarians for nursing communities. The literature service, comprised of 19 webliographies based on the NLC's leadership topics, is available on the UMHSL website. A webliography, by definition, is a list of electronic works relating to a particular topic. The NLC created its own website that provides nurses with a means to identify, enhance and evaluate leadership competencies, and which is linked to the UMHSL website. The contributions of the UMHSL librarians to this project support the goals of instilling leadership skills in nurses, encouraging evidence-based nursing practice, and transforming a practice environment to meet the ultimate goal of effective patient care.

  17. Computer Simulations to Support Science Instruction and Learning: A critical review of the literature

    Science.gov (United States)

    Smetana, Lara Kathleen; Bell, Randy L.

    2012-06-01

    Researchers have explored the effectiveness of computer simulations for supporting science teaching and learning during the past four decades. The purpose of this paper is to provide a comprehensive, critical review of the literature on the impact of computer simulations on science teaching and learning, with the goal of summarizing what is currently known and providing guidance for future research. We report on the outcomes of 61 empirical studies dealing with the efficacy of, and implications for, computer simulations in science instruction. The overall findings suggest that simulations can be as effective, and in many ways more effective, than traditional (i.e. lecture-based, textbook-based and/or physical hands-on) instructional practices in promoting science content knowledge, developing process skills, and facilitating conceptual change. As with any other educational tool, the effectiveness of computer simulations is dependent upon the ways in which they are used. Thus, we outline specific research-based guidelines for best practice. Computer simulations are most effective when they (a) are used as supplements; (b) incorporate high-quality support structures; (c) encourage student reflection; and (d) promote cognitive dissonance. Used appropriately, computer simulations involve students in inquiry-based, authentic science explorations. Additionally, as educational technologies continue to evolve, advantages such as flexibility, safety, and efficiency deserve attention.

  18. Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases.

    Science.gov (United States)

    Kobayashi, Norio; Ishii, Manabu; Takahashi, Satoshi; Mochizuki, Yoshiki; Matsushima, Akihiro; Toyoda, Tetsuro

    2011-07-01

    Global cloud frameworks for bioinformatics research databases become huge and heterogeneous; solutions face various diametric challenges comprising cross-integration, retrieval, security and openness. To address this, as of March 2011 organizations including RIKEN published 192 mammalian, plant and protein life sciences databases having 8.2 million data records, integrated as Linked Open or Private Data (LOD/LPD) using SciNetS.org, the Scientists' Networking System. The huge quantity of linked data this database integration framework covers is based on the Semantic Web, where researchers collaborate by managing metadata across public and private databases in a secured data space. This outstripped the data query capacity of existing interface tools like SPARQL. Actual research also requires specialized tools for data analysis using raw original data. To solve these challenges, in December 2009 we developed the lightweight Semantic-JSON interface to access each fragment of linked and raw life sciences data securely under the control of programming languages popularly used by bioinformaticians such as Perl and Ruby. Researchers successfully used the interface across 28 million semantic relationships for biological applications including genome design, sequence processing, inference over phenotype databases, full-text search indexing and human-readable contents like ontology and LOD tree viewers. Semantic-JSON services of SciNetS.org are provided at http://semanticjson.org.

  19. Team science as interprofessional collaborative research practice: a systematic review of the science of team science literature

    OpenAIRE

    Little, Meg M; St. Hill, Catherine A.; Ware, Kenric B; Swanoski, Michael T; Chapman, Scott A; Lutfiyya, M Nawal; Cerra, Frank B

    2016-01-01

    The National Institute of Health's concept of team science is a means of addressing complex clinical problems by applying conceptual and methodological approaches from multiple disciplines and health professions. The ultimate goal is the improved quality of care of patients with an emphasis on better population health outcomes. Collaborative research practice occurs when researchers from >1 health-related profession engage in scientific inquiry to jointly create and disseminate new knowledge ...

  20. First Experiences with Reading Primary Literature by Undergraduate Life Science Students

    Science.gov (United States)

    van Lacum, Edwin; Ossevoort, Miriam; Buikema, Hendrik; Goedhart, Martin

    2012-08-01

    Learning to read and understand research articles (primary literature) is an important step in the enculturation of higher education students into the scientific community. We presume, based on ideas from the field of genre analysis, that it is important for the development of reading skills to become conscious of the rhetorical structures in research articles. So, we determined how well science students are able to identify 2 important elements of this rhetorical structure: conclusions and grounds. First-year undergraduate life science students who followed a course called 'Biomedical Research' made assignments in which they had to identify these 2 elements. We analysed the answers of 20 students in detail and compared their answers with 2 expert readers. Furthermore, we conducted task-based interviews with 4 students to gain more insight into their reading strategies and to determine how they identify conclusions and grounds. Our results show that students and experts defined conclusions and grounds in different ways. Students and experts agreed on the most important conclusion of the articles. However, students identified a wide range of sentences which were not seen as conclusions by the experts. The grounds students mentioned mostly matched their conclusions. Students sometimes failed to mention important grounds for a particular conclusion. In conclusion, our study shows the differences between student and expert readers of primary literature. Based on our results, we formulated criteria for the design of a teaching strategy that aims to improve students' skills for reading primary literature.

  1. BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences.

    Science.gov (United States)

    McQuilton, Peter; Gonzalez-Beltran, Alejandra; Rocca-Serra, Philippe; Thurston, Milo; Lister, Allyson; Maguire, Eamonn; Sansone, Susanna-Assunta

    2016-01-01

    BioSharing (http://www.biosharing.org) is a manually curated, searchable portal of three linked registries. These resources cover standards (terminologies, formats and models, and reporting guidelines), databases, and data policies in the life sciences, broadly encompassing the biological, environmental and biomedical sciences. Launched in 2011 and built by the same core team as the successful MIBBI portal, BioSharing harnesses community curation to collate and cross-reference resources across the life sciences from around the world. BioSharing makes these resources findable and accessible (the core of the FAIR principle). Every record is designed to be interlinked, providing a detailed description not only on the resource itself, but also on its relations with other life science infrastructures. Serving a variety of stakeholders, BioSharing cultivates a growing community, to which it offers diverse benefits. It is a resource for funding bodies and journal publishers to navigate the metadata landscape of the biological sciences; an educational resource for librarians and information advisors; a publicising platform for standard and database developers/curators; and a research tool for bench and computer scientists to plan their work. BioSharing is working with an increasing number of journals and other registries, for example linking standards and databases to training material and tools. Driven by an international Advisory Board, the BioSharing user-base has grown by over 40% (by unique IP address), in the last year thanks to successful engagement with researchers, publishers, librarians, developers and other stakeholders via several routes, including a joint RDA/Force11 working group and a collaboration with the International Society for Biocuration. In this article, we describe BioSharing, with a particular focus on community-led curation.Database URL: https://www.biosharing.org. © The Author(s) 2016. Published by Oxford University Press.

  2. Assessing urology and nephrology research activity in Arab countries using ISI web of science bibliometric database.

    Science.gov (United States)

    Sweileh, Waleed M; Zyoud, Sa'ed H; Al-Jabi, Samah W; Sawalha, Ansam F

    2014-04-23

    Bibliometric analysis is increasingly being used for research assessment. The main objective of this study was to assess research output in Urology and Nephrology subject from the Arab countries. Original scientific articles or reviews published from the 21 Arab countries in "Urology and Nephrology" subject were screened using the ISI Web of Science database. Research productivity was evaluated based on a methodology developed and used in other bibliometric studies by analyzing the annual productivity, names of journals, citations; top 10 active institution and authors as well as country contribution to Urology and Nephrology research. Three thousand and seventy six documents in "urology and nephrology" subject category were retrieved from 104 journals. This represents 1.4% of the global research output in "urology and nephrology". Four hundred and two documents (12.66%) were published in Annales D Urologie Journal. The h-index of the retrieved documents was 57. The total number of citations, at the time of data analysis, was 30401 with an average citation of 9.57 per document. Egypt, with a total publication of 1284 (40.43%) ranked first among the Arab countries in "urology and nephrology" subject category. Mansoura University in Egypt was the most productive institution with a total of 561 (15.33%) documents. Arab researchers collaborated most with researchers from the United States of America (226; 7.12%) in urology and nephrology research. The present data reveals a good contribution of some Arab countries to the field of "urology and nephrology". More efforts are needed by some other Arab countries to bridge the gap in urology and nephrology research. Overall, the quality of urology/nephrology research is considered relatively high as measured by h-index. Cooperation in urology/nephrology research should be encouraged in the Arab world to bridge the gap with that from developed countries.

  3. Neo-Pluralist Political Science, Economic Sociology and the Conceptual Foundations of the Comparative Capitalisms Literatures

    DEFF Research Database (Denmark)

    Bruff, Ian; Hartmann, Eva

    2014-01-01

    In this paper, we critically assess two of the key conceptual foundations for the comparative capitalisms (CC) literatures, neo-pluralist political science and economic sociology, in order to identify more clearly the deep intellectual roots of these literatures. Principally, we focus on how...... the strengths of neo-pluralism and economic sociology – their attention to detail in considering the huge range of ‘types’ of capitalism that exist across the world – come at a high price. Put briefly, the redefinition of ‘capitalism’ as ‘the economy’ concentrates research agendas on the specific political...... and social conditions found across the world, leaving ‘the economy’ relatively untouched. In consequence, ‘capitalist diversity’ is quickly, and often silently, equated to ‘political diversity’ or ‘social diversity’........

  4. The rice transcript map - RGP estmap2001 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP estmap2001 The rice transcript map Data detail Data name The rice transcript map DOI 10....18908/lsdba.nbdc00318-04-003 Description of data contents Images of a YAC-Based rice transcript map containi...ries 352 entries - About This Database Database Description Download License Update History of This Database... Site Policy | Contact Us The rice transcript map - RGP estmap2001 | LSDB Archive ...

  5. cDNA - ASTRA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ontents List of cDNA in locus Data file File name: astra_cdna.zip File URL: ftp://ftp.biosciencedbc.jp/archiv...ing/transcriptional initiation regionss About This Database Database Description Download License Update History of This Database Site Policy | Contact Us cDNA - ASTRA | LSDB Archive ...

  6. BRC - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Mi...table). Data file File name: brc.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/microbedb/LATEST/brc.ta...rains in JCM. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us BRC - MicrobeDB.jp | LSDB Archive ...

  7. Supplementary Data - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us fRNA...sapiens) - count_taxon.tsv: list of all species and the number of entries in fRNAdb Data file File name: Sup...f data entries 2 files - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Supplementary Data - fRNAdb | LSDB Archive ...

  8. A new resource for the bibliography research: project experience ILISI® Index of Italian Literature on Nursing Sciences

    National Research Council Canada - National Science Library

    Rocco, Gennaro; Bonfigli, Alessandra; Bruno, Eleonora; Fanfera, Edvige; Finocchi, Giovanna; Montevecchi, Alessandro; Napolano, Matilde; Nappini, Patrizia; Stievano, Alessandro; Tallarita, Fabrizio; Turci, Carlo

    2011-01-01

    Since July 2008 the ILISI (Index of Italian Literature on Nursing Sciences) elaborated by the IPASVI nursing college of Rome has been available on-line at the page http://www.ipasvi.roma.it/ita/ILISI...

  9. submitter BioSharing: curated and crowd-sourced metadata standards, databases and data policies in the life sciences

    CERN Document Server

    McQuilton, Peter; Rocca-Serra, Philippe; Thurston, Milo; Lister, Allyson; Maguire, Eamonn; Sansone, Susanna-Assunta

    2016-01-01

    BioSharing (http://www.biosharing.org) is a manually curated, searchable portal of three linked registries. These resources cover standards (terminologies, formats and models, and reporting guidelines), databases, and data policies in the life sciences, broadly encompassing the biological, environmental and biomedical sciences. Launched in 2011 and built by the same core team as the successful MIBBI portal, BioSharing harnesses community curation to collate and cross-reference resources across the life sciences from around the world. BioSharing makes these resources findable and accessible (the core of the FAIR principle). Every record is designed to be interlinked, providing a detailed description not only on the resource itself, but also on its relations with other life science infrastructures. Serving a variety of stakeholders, BioSharing cultivates a growing community, to which it offers diverse benefits. It is a resource for funding bodies and journal publishers to navigate the metadata landscape of the ...

  10. The role of science fiction within the fluidity of slipstream literature

    Directory of Open Access Journals (Sweden)

    Janez Steble

    2015-12-01

    Full Text Available The paper explores the complex and contradictory role of science fiction in slipstream, the type of postmodern non-realistic literature situated between the fantastic genres and the mainstream literary fiction. Because of its unstable status of occupying an interstitial position between multiple literary conventions, the article first deals with an expansive terminology affiliated with slipstream and elucidates upon using a unified term for it. Avantpop, transrealism, and interstitial fiction all help us in understanding the vast postmodern horizon of slipstream. Furthermore, the slipstream's philosophy of cognitive dissonance in comparison to science fiction's is analysed to see the similarities and differences between them. The section is mainly concerned on expanding Darko Suvin's concept of cognition and viewing it as partially compatible with slipstream's estrangement techniques. The final part is focused on the exemplary slipstream novel Vurt by Jeff Noon, a perfect example of science fiction providing material, including latest post-Newtonian paradigms of science, for slipstream to mould it in its own fashion.

  11. Analysis of databases appropriation in the academic staffs of Iranian Universities of Medical Sciences according to the social appropriation approach.

    Science.gov (United States)

    Keyvanara, Mahmoud; Sohrabi, Mozaffar Cheshmeh; Zare, Firoozeh; Hassnazadeh, Akbar; Malekahmadi, Parisa

    2014-01-01

    Numerous researches conducted on about the quality of perception of media messages shows that the people are not passive receivers but they have the ability of understanding, interpreting and accepting or rejecting messages. In order to make clear the relationship of information and communication technologies with social changes and to gain a broader vision from this scope, sociological theories about information and communication technologies' usage, especially appropriation approach can be very useful. So, keeping in mind the important role of Databases in the qualitative expansion of education, research, diagnosis, remedy and medical services presentation, this research was carried out with the aim of status determination of databases appropriation in the academic staffs of Iranian Universities of Medical Sciences according to the social appropriation approach in 2012. This is an applicative research of an analytical-descriptive type, which was carried out by measurement approach. The statistical society of this research was composed of the academic staffs of the Iranian Universities of Medical Sciences in 2012 and finally 390 academic staffs were selected according to the Cochran's formula were selected. The research tool are searcher's made questionnaire, which was composed of nine separate parts. Its validity was accepted by the specialists and its reliability was calculated and found to be 0.961 by Cronbakh's alpha. Database appropriation score in the academic staffs of Iranian Universities of Medical Sciences with 65.020% was in a good status and data bases dis appropriation score with 71.484 was in a high status. According to the findings of this research, Librarians and politicians in this scope-with determination of the academic staff's positive and negative points in usage and appropriation would be capable of accurately diagnozing and analyzing the chances and challenges of the academic staffs members in using databases and would also be capable of

  12. Pathway data concerning differentiation and activation of macrophage - DMPD | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available scription of data contents Pathways concerning differentiation and activation of macrophage extracted from the literature... each paper in the above literature list in the CSML format, which is an XML form...at. Data analysis method The curator reads the literature, and converts the contents into a pathway in the C

  13. The HERON Project - Multimedia Database Support for History and Human Sciences

    OpenAIRE

    Kießling, Werner; Erber, Katharina; Balke, Wolf-Tilo; Birke, Thomas; Wagner, Matthias

    2006-01-01

    The interdisciplinary HERON project investigates the impact of multimedia applications from the humanities, in particular heraldry, on future database technology. We present first evaluation results of querying image databases by visual content. Also the requirements of a digital workbench for art historians are described. Here we present an approach how to tackle the complex problem of exchanging multimedia documents over the internet.

  14. InterPro search result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available nbdc00120-021 Description of data contents Results of motif searches against the InterPro database Data file...encedbc.jp/togodb/view/kome_interpro_search_result#en Data acquisition method InterPro release 8.0 was used for the searches.... Data analysis method Performed motif searches against the InterPro database. The following

  15. Genetic and bibliographic information - GenLibi | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available n Data acquisition method Articles related to genes were obtained from the bibliography database (JDream II)...ism Organism of the gene Phenotype from JST bibliography Names of the diseases or...erms that are corresponding to the diseases or the phenotypes JST bibliography database IDs of the articles

  16. License - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us PGDBj - Ortholog DB License License to Use This Database Last updated : 2017/03/07 You may use this database in compl...iance with the terms and conditions of the license described below. The license spe

  17. License - Togo Picture Gallery | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available liance with the terms and conditions of the license described below. The license sp...List Contact us Togo Picture Gallery License License to Use This Database Last updated : 2017/05/16 You may use this database in comp

  18. Review and analysis of selected databases and subject headings with regard to wood sciences and technology

    OpenAIRE

    Bartol, Tomaž

    2007-01-01

    End-users should be able to identify the most relevant scientific and technical information resources. They must understand database structure, query techniques, controlled dictionaries, terminology and indexing schemes. In the present article, we review principal characteristics of the following information systems: bibliographic databases (Agricola, Agris, Cab Abstracts (CABI), Compendex, Inspec, Iconda, statistical collections Eurostat and Faostat, and technical standards and patents ISO a...

  19. Taxon (Cyanobacteria) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ....18908/lsdba.nbdc01194-02-006.V002 Version V2 10.18908/lsdba.nbdc01194-02-006.V002 Update History V1 10.1890...ower taxon Next infrageneric taxon About This Database Database Description Download License Update History

  20. Taxon (Viridiplantae) - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ....18908/lsdba.nbdc01194-02-003.V002 Version V2 10.18908/lsdba.nbdc01194-02-003.V002 Update History V1 10.1890...ower taxon Next infrageneric taxon About This Database Database Description Download License Update History

  1. License - ConfC | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available re Alike 4.0 International . If you use data from this database, please be sure attribute this database as follows: ConfC © Tamots... thereof not licensed under the license. Tamotsu Noguchi Tel: 042-495-8736 E-mail

  2. Coverage and quality: A comparison of Web of Science and Scopus databases for reporting faculty nursing publication metrics.

    Science.gov (United States)

    Powell, Kimberly R; Peterson, Shenita R

    Web of Science and Scopus are the leading databases of scholarly impact. Recent studies outside the field of nursing report differences in journal coverage and quality. A comparative analysis of nursing publications reported impact. Journal coverage by each database for the field of nursing was compared. Additionally, publications by 2014 nursing faculty were collected in both databases and compared for overall coverage and reported quality, as modeled by Scimajo Journal Rank, peer review status, and MEDLINE inclusion. Individual author impact, modeled by the h-index, was calculated by each database for comparison. Scopus offered significantly higher journal coverage. For 2014 faculty publications, 100% of journals were found in Scopus, Web of Science offered 82%. No significant difference was found in the quality of reported journals. Author h-index was found to be higher in Scopus. When reporting faculty publications and scholarly impact, academic nursing programs may be better represented by Scopus, without compromising journal quality. Programs with strong interdisciplinary work should examine all areas of strength to ensure appropriate coverage. Copyright © 2017 Elsevier Inc. All rights reserved.

  3. Friends and Family: A Literature Review on How High School Social Groups Influence Advanced Math and Science Coursetaking

    Science.gov (United States)

    Gottfried, Michael; Owens, Ann; Williams, Darryl; Kim, Hui Yon; Musto, Michela

    2017-01-01

    In this study, we synthesized the literature on how informal contexts, namely friends and family social groups, shape high school students' likelihood of pursuing advanced math and science coursework. Extending scholarly understandings of STEM education, we turned to the body of literature with three guiding questions: (1) What influence do…

  4. Who, What, Where and When! The Bibliographical Control of the Literature of Librarianship and Information Science (LOLIS) in Australia.

    Science.gov (United States)

    Rasmussen, Radha

    1987-01-01

    Describes an investigation that assessed the effectiveness of Australian indexing and abstracting services in their bibliographic control of the literature of library and information science. Conclusions about the coverage of the literature are presented, and methods for improvement are suggested. (CLB)

  5. Exploring Instructional Strategies to Develop Prospective Elementary Teachers' Children's Literature Book Evaluation Skills for Science, Ecology and Environmental Education

    Science.gov (United States)

    Hug, J. William

    2010-01-01

    This article is an auto-ethnographic account of the development of a children's literature book critique assignment by a science teacher educator sharing instructional dilemmas and pedagogical responses. Prospective elementary teachers enrolled in an elementary school science teaching methods course in the US selected and evaluated children's…

  6. Genotype data - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us RGP...-004 Description of data contents Genotype data for all segregants (186 individuals) of each chromosome. Data file File name: rgp..._gmap98_genotype_data.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rgp-gmap98/LATEST/rgp....biosciencedbc.jp/togodb/view/rgp_gmap98_genotype_data#en Data acquisition method These data are the results...ic code by MAPMAKER About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Genotype data - RGP gmap98 | LSDB Archive ...

  7. Transcriptome data - High-sugar stress - DGBY | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us DGBY Transcriptome data - High-sugar stress Data detail Data name Transcriptome data - High-...sugar stress DOI 10.18908/lsdba.nbdc00953-003 Description of data contents In the modern baking industry, hi...st Genome 2.0 Array Data analysis method - Number of data entries - - About This Database Database Descrip...tion Download License Update History of This Database Site Policy | Contact Us Transcriptome data - High-sugar stress - DGBY | LSDB Archive ...

  8. Transcriptome data - Air-drying stress - DGBY | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us DGBY Transcriptome data - Air-drying stress Data detail Data name Transcriptome data - Air-d...rying stress DOI 10.18908/lsdba.nbdc00953-004 Description of data contents Changes in the gene expression of...ffymetrix Yeast Genome S98 Array Data analysis method - Number of data entries - - About This Database Database Descript...ion Download License Update History of This Database Site Policy | Contact Us Transcriptome data - Air-drying stress - DGBY | LSDB Archive ...

  9. BLOCKS - PDB SEQRES matching - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DB-SPIRE BLOCKS - PDB SEQRES matching Data detail Data name BLOCKS - PDB SEQRES matching DOI...ES matches a BLOCKS entry Data file File name: dbspire_blocks_pdb_seq.zip File URL: ftp://ftp.biosciencedbc.jp/archi... Sequence numbers of PDB entries/chains whose SEQRES matches this BLOCKS entry About This Database Database ...Description Download License Update History of This Database Site Policy | Contact Us BLOCKS - PDB SEQRES matching - DB-SPIRE | LSDB Archive ...

  10. PROSITE - PDB SEQRES matching - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DB-SPIRE PROSITE - PDB SEQRES matching Data detail Data name PROSITE - PDB SEQRES matching D...QRES matches a PROSITE entry Data file File name: dbspire_prosite_pdb_seq.zip File URL: ftp://ftp.biosciencedbc.jp/archi...PDB chain pdbMatchLine Sequence numbers of PDB entries/chains whose SEQRES matches this PROSITE entry About Thi...s Database Database Description Download License Update History of This Database Site Policy | Contact Us PROSITE - PDB SEQRES matching - DB-SPIRE | LSDB Archive ...

  11. YAC clone information - RGP physicalmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 08/lsdba.nbdc00318-06-002 Description of data contents YAC clones selected with DNA markers Data file File name: rgp_physical...map_yac_clones.zip File URL: ftp://ftp.biosciencedbc.jp/archive/rgp-physicalmap/LATEST/rgp_physical...sciencedbc.jp/togodb/view/rgp_physicalmap_yac_clones#en Data acquisition method YAC clones selected with RGP...rom. No. Chromosome number Region Region number Physical map image The file name of rice physical map Order ...bout This Database Database Description Download License Update History of This Database Site Policy | Contact Us YAC clone information - RGP physicalmap | LSDB Archive ...

  12. Phenome data - High-sugar stress - DGBY | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...s.zip File size: 90KB File name: Original file: High-sugar_stress.xls File URL: ftp://ftp.biosciencedbc.jp/archive/dgby/LATEST/Hi... Center for Protein Sequences) About This Database Database Description Download License Update History of Thi...s Database Site Policy | Contact Us Phenome data - High-sugar stress - DGBY | LSDB Archive ... ...List Contact us DGBY Phenome data - High-sugar stress Data detail Data name Phenome data - High-sugar stress

  13. Ortholog - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Mi...ersion V2 10.18908/lsdba.nbdc01181-010.V002 Update History V1 - Description of data contents Microbial ortho... Data file File name: ortholog.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/microbedb/LATEST/ortholog...814 triples - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Ortholog - MicrobeDB.jp | LSDB Archive ...

  14. NCBI - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Mi... NCBI related data (i.e., BioProject, BioSample, PubMed, and Assembly) which are important to integrate data in Mi...ctories (see the following table). Data file File name: ncbi.tar.gz File URL: ftp://ftp.biosciencedbc.jp/archive/mi... are important to integrate data in MicrobeDB.jp version 2 were obtained by parsi...ports in NCBI Assembly. About This Database Database Description Download License Update History of This Database Site Policy | Contact Us NCBI - MicrobeDB.jp | LSDB Archive ...

  15. Conformation analysis - ConfC | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us ConfC Conformation analysis Data detail Data name Conformation analysis DOI 10.18908/lsdba.n...bdc00400-005 Description of data contents Results of conformation analysis for PDB files (raw data) Each res...ile size: 63.9 MB Simple search URL - Data acquisition method - Data analysis method - Number of data entrie...s 352 entries - About This Database Database Description Download License Update History of This Database Site Policy | Contact Us Conformation analysis - ConfC | LSDB Archive ...

  16. Secondary school science teaching, 1970--1992: Objectives as stated in periodical literature

    Science.gov (United States)

    Hemby, Brian Franklin

    Imperative for Educational Reform. (2) Authors in Higher Education wrote more articles about the objectives for the teaching of secondary school science than those in the other categories. This was probably a reflection of the "publish or perish" environment in many colleges and universities. (3) The most important objectives for secondary school science teaching were Philosophical, sociological, and political aspects, Processes, skills, and techniques, and Major facts, principles, or fundamentals. The preponderance of these objectives is most likely a result of cultural and social unrest during this period. (4) The number of research-oriented articles, as a percentage of all articles, doubled from the first subperiod to the second subperiod. There appears to be a trend during the second subperiod toward more data-based articles.

  17. Stem cell transplantation for treating Parkinson's disease: Literature analysis based on the Web of Science.

    Science.gov (United States)

    Li, Runhui

    2012-06-05

    To identify global research trends of stem cell transplantation for treating Parkinson's disease using a bibliometric analysis of the Web of Science. We performed a bibliometric analysis of data retrievals for stem cell transplantation for treating Parkinson's disease from 2002 to 2011 using the Web of Science. (a) peer-reviewed articles on stem cell transplantation for treating Parkinson's disease which were published and indexed in the Web of Science; (b) type of articles: original research articles, reviews, meeting abstracts, proceedings papers, book chapters, editorial material and news items; (c) year of publication: 2002-2011. (a) articles that required manual searching or telephone access; (b) we excluded documents that were not published in the public domain; (c) we excluded a number of corrected papers from the total number of articles. (1) Type of literature; (2) annual publication output; (3) distribution according to journals; (4) distribution according to subject areas; (5) distribution according to country; (6) distribution according to institution; (7) comparison of countries that published the most papers on stem cell transplantation from different cell sources for treating Parkinson's disease; (8) comparison of institutions that published the most papers on stem cell transplantation from different cell sources for treating Parkinson's disease in the Web of Science from 2002 to 2011; (9) comparison of studies on stem cell transplantation from different cell sources for treating Parkinson's disease. In total, 1 062 studies on stem cell transplantation for treating Parkinson's disease appeared in the Web of Science from 2002 to 2011, almost one third of which were from American authors and institutes. The number of studies on stem cell transplantation for treating Parkinson's disease had gradually increased over the past 10 years. Papers on stem cell transplantation for treating Parkinson's disease appeared in journals such as Stem Cells and

  18. Integrating Russian Methods of Teaching Literature into the World Science and Practice

    Directory of Open Access Journals (Sweden)

    Tatyana Benkovskaya

    2016-11-01

    Full Text Available The paper is aimed at solving one of the strategical tasks stated in the Russian literature teaching methods that is associated with its coming into the world science and practice – presentation and dissemination of the Russian experience in the sphere of literary development of school aged readers. The authors are historiographs and proceeding from the results of their research they first suggest considering the possible prospects of completing the task. The first prospect is associated with presentation of the conceptual model of today's Russian methodical system of literary development of schoolchildren in the world science; the second one – with dissemination of the Russian assessment criteria for variative models of the methodical system of literary development of schoolchildren in the world practice. The content of each prospect includes definition of keywords and the technique for implementation of the former. The prospects of presentation and dissemination of the Russian experience in the sphere of literary development of school aged readers that are suggested for implementation can make a considerable contribution to the world experience enriching it with grounded alternative scientific approaches to the assessment of modern condition of literary education in the foreign countries. The authors highlight creation of additional preconditions required for interaction in the area of development of methodology of the comparative science about the reader as one of the important parameter of the successful performance in bringing the prospects into life.

  19. Download - TogoTV | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ... Download License Update History of This Database Site Policy | Contact Us Download - TogoTV | LSDB Archive ...

  20. License - eSOL | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...iption Download License Update History of This Database Site Policy | Contact Us License - eSOL | LSDB Archive ...

  1. Download - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...Download License Update History of This Database Site Policy | Contact Us Download - fRNAdb | LSDB Archive ...

  2. Raw Data (ASCII format) - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available a (DNase I footprinting study / Chemical modifications / Gel retardation assay / homology / other) RD Exte...rnal Database (MEDLINE number or DDBJ/EMBL/GenBank accession number) SQ Sequence of

  3. PIR search result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available e filtered with Expect values lower than 1e-10. Number of data entries 1,549,409 ...he searches. Data analysis method Performed blastx searches against the PIR protein database. The results ar

  4. Designation of organism group - Gclust Server | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Gclust Server Designation of organism group Data detail Data name Designation of organism gr...icense Update History of This Database Site Policy | Contact Us Designation of organism group - Gclust Server | LSDB Archive ...

  5. CEL file attributes - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Open...y of This Database Site Policy | Contact Us CEL file attributes - Open TG-GATEs | LSDB Archive ...

  6. Download - ChIP-Atlas | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us ChIP-Atla...tory of This Database Site Policy | Contact Us Download - ChIP-Atlas | LSDB Archive ...

  7. Building a multi-scaled geospatial temporal ecology database from disparate data sources: fostering open science and data reuse.

    Science.gov (United States)

    Soranno, Patricia A; Bissell, Edward G; Cheruvelil, Kendra S; Christel, Samuel T; Collins, Sarah M; Fergus, C Emi; Filstrup, Christopher T; Lapierre, Jean-Francois; Lottig, Noah R; Oliver, Samantha K; Scott, Caren E; Smith, Nicole J; Stopyak, Scott; Yuan, Shuai; Bremigan, Mary Tate; Downing, John A; Gries, Corinna; Henry, Emily N; Skaff, Nick K; Stanley, Emily H; Stow, Craig A; Tan, Pang-Ning; Wagner, Tyler; Webster, Katherine E

    2015-01-01

    Although there are considerable site-based data for individual or groups of ecosystems, these datasets are widely scattered, have different data formats and conventions, and often have limited accessibility. At the broader scale, national datasets exist for a large number of geospatial features of land, water, and air that are needed to fully understand variation among these ecosystems. However, such datasets originate from different sources and have different spatial and temporal resolutions. By taking an open-science perspective and by combining site-based ecosystem datasets and national geospatial datasets, science gains the ability to ask important research questions related to grand environmental challenges that operate at broad scales. Documentation of such complicated database integration efforts, through peer-reviewed papers, is recommended to foster reproducibility and future use of the integrated database. Here, we describe the major steps, challenges, and considerations in building an integrated database of lake ecosystems, called LAGOS (LAke multi-scaled GeOSpatial and temporal database), that was developed at the sub-continental study extent of 17 US states (1,800,000 km(2)). LAGOS includes two modules: LAGOSGEO, with geospatial data on every lake with surface area larger than 4 ha in the study extent (~50,000 lakes), including climate, atmospheric deposition, land use/cover, hydrology, geology, and topography measured across a range of spatial and temporal extents; and LAGOSLIMNO, with lake water quality data compiled from ~100 individual datasets for a subset of lakes in the study extent (~10,000 lakes). Procedures for the integration of datasets included: creating a flexible database design; authoring and integrating metadata; documenting data provenance; quantifying spatial measures of geographic data; quality-controlling integrated and derived data; and extensively documenting the database. Our procedures make a large, complex, and integrated

  8. Building a multi-scaled geospatial temporal ecology database from disparate data sources: Fostering open science through data reuse

    Science.gov (United States)

    Soranno, Patricia A.; Bissell, E.G.; Cheruvelil, Kendra S.; Christel, Samuel T.; Collins, Sarah M.; Fergus, C. Emi; Filstrup, Christopher T.; Lapierre, Jean-Francois; Lotting, Noah R.; Oliver, Samantha K.; Scott, Caren E.; Smith, Nicole J.; Stopyak, Scott; Yuan, Shuai; Bremigan, Mary Tate; Downing, John A.; Gries, Corinna; Henry, Emily N.; Skaff, Nick K.; Stanley, Emily H.; Stow, Craig A.; Tan, Pang-Ning; Wagner, Tyler; Webster, Katherine E.

    2015-01-01

    Although there are considerable site-based data for individual or groups of ecosystems, these datasets are widely scattered, have different data formats and conventions, and often have limited accessibility. At the broader scale, national datasets exist for a large number of geospatial features of land, water, and air that are needed to fully understand variation among these ecosystems. However, such datasets originate from different sources and have different spatial and temporal resolutions. By taking an open-science perspective and by combining site-based ecosystem datasets and national geospatial datasets, science gains the ability to ask important research questions related to grand environmental challenges that operate at broad scales. Documentation of such complicated database integration efforts, through peer-reviewed papers, is recommended to foster reproducibility and future use of the integrated database. Here, we describe the major steps, challenges, and considerations in building an integrated database of lake ecosystems, called LAGOS (LAke multi-scaled GeOSpatial and temporal database), that was developed at the sub-continental study extent of 17 US states (1,800,000 km2). LAGOS includes two modules: LAGOSGEO, with geospatial data on every lake with surface area larger than 4 ha in the study extent (~50,000 lakes), including climate, atmospheric deposition, land use/cover, hydrology, geology, and topography measured across a range of spatial and temporal extents; and LAGOSLIMNO, with lake water quality data compiled from ~100 individual datasets for a subset of lakes in the study extent (~10,000 lakes). Procedures for the integration of datasets included: creating a flexible database design; authoring and integrating metadata; documenting data provenance; quantifying spatial measures of geographic data; quality-controlling integrated and derived data; and extensively documenting the database. Our procedures make a large, complex, and integrated

  9. Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science

    Science.gov (United States)

    Thessen, Anne E.; McGinnis, Sean; North, Elizabeth W.

    2016-02-01

    Process studies and coupled-model validation efforts in geosciences often require integration of multiple data types across time and space. For example, improved prediction of hydrocarbon fate and transport is an important societal need which fundamentally relies upon synthesis of oceanography and hydrocarbon chemistry. Yet, there are no publically accessible databases which integrate these diverse data types in a georeferenced format, nor are there guidelines for developing such a database. The objective of this research was to analyze the process of building one such database to provide baseline information on data sources and data sharing and to document the challenges and solutions that arose during this major undertaking. The resulting Deepwater Horizon Database was approximately 2.4 GB in size and contained over 8 million georeferenced data points collected from industry, government databases, volunteer networks, and individual researchers. The major technical challenges that were overcome were reconciliation of terms, units, and quality flags which were necessary to effectively integrate the disparate data sets. Assembling this database required the development of relationships with individual researchers and data managers which often involved extensive e-mail contacts. The average number of emails exchanged per data set was 7.8. Of the 95 relevant data sets that were discovered, 38 (40%) were obtained, either in whole or in part. Over one third (36%) of the requests for data went unanswered. The majority of responses were received after the first request (64%) and within the first week of the first request (67%). Although fewer than half of the potentially relevant datasets were incorporated into the database, the level of sharing (40%) was high compared to some other disciplines where sharing can be as low as 10%. Our suggestions for building integrated databases include budgeting significant time for e-mail exchanges, being cognizant of the cost versus

  10. Compound list - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available le CEL files) Pathological items (Liver) Pathological findings and slide images o...f in vivo tests with rat liver (Link to Pathological items, Pathological images and CEL file attributes) Pat...hological items (Kidney) Pathological findings and slide images of in vivo tests with rat kidney (Link to Pa...thological items, Pathological images and CEL file attributes) About This Database Database Description Down

  11. Specialist Bibliographic Databases

    Science.gov (United States)

    2016-01-01

    Specialist bibliographic databases offer essential online tools for researchers and authors who work on specific subjects and perform comprehensive and systematic syntheses of evidence. This article presents examples of the established specialist databases, which may be of interest to those engaged in multidisciplinary science communication. Access to most specialist databases is through subscription schemes and membership in professional associations. Several aggregators of information and database vendors, such as EBSCOhost and ProQuest, facilitate advanced searches supported by specialist keyword thesauri. Searches of items through specialist databases are complementary to those through multidisciplinary research platforms, such as PubMed, Web of Science, and Google Scholar. Familiarizing with the functional characteristics of biomedical and nonbiomedical bibliographic search tools is mandatory for researchers, authors, editors, and publishers. The database users are offered updates of the indexed journal lists, abstracts, author profiles, and links to other metadata. Editors and publishers may find particularly useful source selection criteria and apply for coverage of their peer-reviewed journals and grey literature sources. These criteria are aimed at accepting relevant sources with established editorial policies and quality controls. PMID:27134485

  12. Big Data in Science and Healthcare: A Review of Recent Literature and Perspectives

    Science.gov (United States)

    Miron-Shatz, T.; Lau, A. Y. S.; Paton, C.

    2014-01-01

    Summary Objectives As technology continues to evolve and rise in various industries, such as healthcare, science, education, and gaming, a sophisticated concept known as Big Data is surfacing. The concept of analytics aims to understand data. We set out to portray and discuss perspectives of the evolving use of Big Data in science and healthcare and, to examine some of the opportunities and challenges. Methods A literature review was conducted to highlight the implications associated with the use of Big Data in scientific research and healthcare innovations, both on a large and small scale. Results Scientists and health-care providers may learn from one another when it comes to understanding the value of Big Data and analytics. Small data, derived by patients and consumers, also requires analytics to become actionable. Connectivism provides a framework for the use of Big Data and analytics in the areas of science and healthcare. This theory assists individuals to recognize and synthesize how human connections are driving the increase in data. Despite the volume and velocity of Big Data, it is truly about technology connecting humans and assisting them to construct knowledge in new ways. Concluding Thoughts The concept of Big Data and associated analytics are to be taken seriously when approaching the use of vast volumes of both structured and unstructured data in science and health-care. Future exploration of issues surrounding data privacy, confidentiality, and education are needed. A greater focus on data from social media, the quantified self-movement, and the application of analytics to “small data” would also be useful. PMID:25123717

  13. Teaching Earth Sciences as an interdisciplinary subject: Novel module design involving research literature

    Science.gov (United States)

    Tong, Vincent C. H.

    2010-05-01

    The study of Earth Sciences requires an interdisciplinary approach as it involves understanding scientific knowledge originating from a wide spectrum of research areas. Not only does it include subjects ranging from, for instance, hydrogeology to deep crustal seismology and from climate science to oceanography, but it also has many direct applications in closely related disciplines such as environmental engineering and natural resources management. While research crossing traditional disciplinary boundaries in geosciences is becoming increasingly common, there is only limited integration of interdisciplinary research in the teaching of the subject. Given that the transition from undergraduate education based on subject modules to postgraduate interdisciplinary research is never easy, such integration is a highly desirable pedagogical approach at both undergraduate and postgraduate levels. My presentation is based on a recent teaching project involving novel design of an undergraduate course. The course is implemented in order to address the synergy between research and teaching (Tong, 2009). This project has been shown to be effective and successful in teaching geosciences undergraduates at the University of London. The module consists of studying core geophysical principles and linking them directly to a selection of recently published research papers in a wide range of interdisciplinary applications. Research reviewing and reporting techniques are systematically developed, practised and fully integrated into teaching of the core scientific theories. A fully-aligned assignment with a feedback website invites the students to reflect on the scientific knowledge and the study skills related to research literature they have acquired in the course. This teaching project has been recognized by a teaching award (http://www.clpd.bbk.ac.uk/staff/BETA). In this presentation, I will discuss how undergraduate teaching with a focus on research literature in Earth Sciences can

  14. List of isozyme loci - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap98 List of isozyme loci Data detail Data name List of isozyme loci DOI 10.18908/lsdb...he present high-density linkage map, and that were putatively identified as isozyme genes. Data file File name: rgp_gmap98_iso...gmap98/LATEST/rgp_gmap98_isozyme_loci.zip File size: 611 B Simple search URL http://togodb.biosciencedbc.jp/...0001 were considered as functionally identical clones. And we have selected the ones that hit the isozyme ge...his Database Database Description Download License Update History of This Database Site Policy | Contact Us List of isozyme loci - RGP gmap98 | LSDB Archive ...

  15. Data management and data analysis techniques in pharmacoepidemiological studies using a pre-planned multi-database approach: a systematic literature review.

    Science.gov (United States)

    Bazelier, Marloes T; Eriksson, Irene; de Vries, Frank; Schmidt, Marjanka K; Raitanen, Jani; Haukka, Jari; Starup-Linde, Jakob; De Bruin, Marie L; Andersen, Morten

    2015-09-01

    To identify pharmacoepidemiological multi-database studies and to describe data management and data analysis techniques used for combining data. Systematic literature searches were conducted in PubMed and Embase complemented by a manual literature search. We included pharmacoepidemiological multi-database studies published from 2007 onwards that combined data for a pre-planned common analysis or quantitative synthesis. Information was retrieved about study characteristics, methods used for individual-level analyses and meta-analyses, data management and motivations for performing the study. We found 3083 articles by the systematic searches and an additional 176 by the manual search. After full-text screening of 75 articles, 22 were selected for final inclusion. The number of databases used per study ranged from 2 to 17 (median = 4.0). Most studies used a cohort design (82%) instead of a case-control design (18%). Logistic regression was most often used for individual-level analyses (41%), followed by Cox regression (23%) and Poisson regression (14%). As meta-analysis method, a majority of the studies combined individual patient data (73%). Six studies performed an aggregate meta-analysis (27%), while a semi-aggregate approach was applied in three studies (14%). Information on central programming or heterogeneity assessment was missing in approximately half of the publications. Most studies were motivated by improving power (86%). Pharmacoepidemiological multi-database studies are a well-powered strategy to address safety issues and have increased in popularity. To be able to correctly interpret the results of these studies, it is important to systematically report on database management and analysis techniques, including central programming and heterogeneity testing. © 2015 The Authors. Pharmacoepidemiology and Drug Safety published by John Wiley & Sons, Ltd.

  16. Sequence Data - fRNAdb | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us fRNA...scription of data contents Functional RNA sequence files (FASTA) - sequence.zip: Aggregation of the followin...g files - mirna.zip: miRNA sequences - ncrna.zip: ncRNA sequences - shortread.zip: Sequences from short read... Data acquisition method Acquired from journal papers and existing RNA databases. Data analysis method - Num...License Update History of This Database Site Policy | Contact Us Sequence Data - fRNAdb | LSDB Archive ...

  17. BLOCKS - PDB matching - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...List Contact us DB-SPIRE BLOCKS - PDB matching Data detail Data name BLOCKS - PDB matching DOI 10.18908/lsdb...a.nbdc00411-006 Description of data contents PDB entries/chains which matches a BLOCKS entry Data file File ...name: dbspire_blocks_pdb.zip File URL: ftp://ftp.biosciencedbc.jp/archive/dbspire/LATEST/dbspire_blocks_pdb.... ID pdbChain PDB Chain About This Database Database Description Download License Update History of Thi

  18. Download - DB-SPIRE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available db_atom.zip (6.2 MB) Simple search and download Downlaod via FTP FTP server is sometimes jammed. If it is, a... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us DB-SPIRE Download First of all, please read the license of this database. Data names and dat...a descriptions are about the downloadable data in this page. They might not correspond to the contents of th...e original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  19. Download - KAIKOcDNA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 4.8 KB) Simple search and download Downlaod via FTP FTP server is sometimes jammed. If it is, access [here].... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us KAIKOcDNA Download First of all, please read the license of this database. Data names and da...ta descriptions are about the downloadable data in this page. They might not correspond to the contents of t...he original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  20. Download - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us NBDC NikkajiRDF Download First of all, please read the license of this database. Data names ...and data descriptions are about the downloadable data in this page. They might not correspond to the content...s of the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow...C_NikkajiRDF_core.tar.gz (277 MB) - Downlaod via FTP FTP server is sometimes jamm

  1. Download - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available chments Open-tggates_AllAttribute.zip (1.8 MB) Simple search and download Downlaod via FTP FTP server is som... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us Open TG-GATEs Download First of all, please read the license of this database. Data names an...d data descriptions are about the downloadable data in this page. They might not correspond to the contents ...of the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  2. Download - PGDBj - Ortholog DB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available bacteria) pgdbj_ortholog_db_cyanobacteria_taxon.zip (6.8 KB) Simple search and download Dow... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us PGDBj - Ortholog DB Download First of all, please read the license of this database. Data na...mes and data descriptions are about the downloadable data in this page. They might not correspond to the con...tents of the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  3. Download - RGP estmap2001 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us RGP estmap2001 Download First of all, please read the license of this database. Data names a...nd data descriptions are about the downloadable data in this page. They might not correspond to the contents... of the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow...ST mapping results rgp_estmap2001_main.zip (597 B) Simple search and download 3 Details of rice EST mapping

  4. Download - RGP gmap2000 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available 2000_marker.zip (46.7 KB) Simple search and download Downlaod via FTP FTP server is sometimes jammed. If it ... English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us RGP gmap2000 Download First of all, please read the license of this database. Data names and... data descriptions are about the downloadable data in this page. They might not correspond to the contents o...f the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow

  5. Download - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us RGP gmap98 Download First of all, please read the license of this database. Data names and d...ata descriptions are about the downloadable data in this page. They might not correspond to the contents of ...the original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow...ain.zip (355 B) Simple search and download 3 High-density linkage map information rgp_gmap98_detail.zip (37.

  6. Nursing thesis database project: a cooperative venture for nursing faculty and computer science professionals.

    Science.gov (United States)

    Schermer, J; Geisler, E; Vang, P

    1995-01-01

    The authors describe the development of an educational database project designed to promote the accessibility of nursing administration theses data for graduate students and faculty in a university nursing administration program. The roles of a nursing faculty member, a computer laboratory administrator, and a programmer are detailed as they work together from the concept phase of the project through its evaluation. The results of their combined efforts provided a reliable and efficient database, resulted in a closer interdisciplinary relationship, and allowed valuable nursing research information to be shared more widely within the university.

  7. Lecturers’ Understanding on Indexing Databases of SINTA, DOAJ, Google Scholar, SCOPUS, and Web of Science: A Study of Indonesians

    Science.gov (United States)

    Saleh Ahmar, Ansari; Kurniasih, Nuning; Irawan, Dasapta Erwin; Utami Sutiksno, Dian; Napitupulu, Darmawan; Hafid, Harapin; Ikhsan Setiawan, Muhammad; Simarmata, Janner; Wibowo, Agung; Sururi, Ahmad; Iskandar, Akbar; Paulus Saleky, Andre; Kurniawan, Citra; Sagala, Danner; Novitasari, Dewiana; Eka Indriani, Dian; Ridho Kismawadi, Early; Ende; Souisa, Fabian; Liantoni, Febri; Soehardi, Fitridawati; Hardi; Pribady, Haries; Baharun, Hasan; Vensye Saiya, Heny; Mulyaningsih, Indrya; Diah Faryuni, Irfana; Sugiarto, Irwan; Sampurno, Joko; Dwi Putri, Lusi; Barid Nizarudin Wajdi, Muh.; Syahrul Kahar, Muhammad; Anggraini, Muthia; Nur Rosyida, Novia; Fajarianto, Otto; Ratnadewi; Madi, Riski Amalia; Sumiati, Ruzita; Bahri, Saeful; Listiawan, Tomi; Muddatstsir, Uun Dwi Al; Aulia, Vivi; Widyantoro, Wahyu; Anita, Wan; Teniwut, Wellem A.; Gde Satia Utama, A. A.; Aswari, Aan; Ghofur, Abd.; Atsar, Abdul; Haris Nasution, Abdul; Rahman Suleman, Abdul; Hasibuan, Abdurrozzaq; Daengs GS, Achmad; Yusuf, Achmad; Santoso, Adi; Nugroho Catur Saputro, Agung; Darmuki, Agus; Suradi, Agustinus; Yakin, Ahmad Al; Rifqi, Ainur; Raditya, Aji; Pramoekti Narendra, Albertoes; Amaliatulwalidain; Upe, Ambo; Riyanto, Andi; Wijayanto, Andik; Yanto, Andri; Meta Ruswana, Angra; Dewi Moelyaningrum, Anita; Yuliana, Anna; Ariyanto, Anto; Ardiansah; Purwadi, Ari; Hendrawan, Aria; Wahyuni, Aria; Arjulayana; Dewi, Arlis; As’adi; Najmurrokhman, Asep; Niati, Asih; Asrianti; Bahidin Laode, M.; Cahyono, Bambang Eko Hari; Adhi Prakosa, Bayu; Ubaya Nindya, Beta; Hamuddin, Budianto; Fajar Budi Hartanto, Cahya; Agus Sugianto, Castaka; Chairuddin; Sriyanti, Cut; Purnomo, D.; Sari Marbun, Dahlena; Andayani, Dahlia; Susilo, Daniel; Darmawan; Ulpa Anggraini, Desi; Intan Surya Saputra, Dhanar; Febrida Sari, Dian; Rianita, Dian; Arief, Diana; Susanto, Didi; Hadi Saputra, Didin; Darmawan, Didit; Afriansyah, Dini; Maknun, Djohar; Rays Pattilouw, Djufri; Cahyono, Dwi; Ermayanti, Dwi; Wityasminingsih, E.; Hartati, Eka; Sari Siswi Ciptaningsih, Eka Maya; Santoso, Ekbal; Sumartono, Eko; Ratnawati, Elfrida; Gultom, Elida; Khuzaemah, Emah; Dewiwati Pelipa, Emilia; Masrunik, Endah; Fourianalistyawati, Endang; Defitriani, Eni; Yudianto, Erfan; Kunto Aribowo, Eric; Erpidawati; Satria, Erwinsyah; Youhanita, Ety; Erlin, Euis; Gravitiani, Evi; Sukmayeti, Evi; Fadlina; Fathimah; Fatimah; Nur Arifah, Fatimah; Farchan, Fauzi; Febrianty; Augustinah, Fedianty; Huda, Feri; Fidrayani; Firman; Laumal, Folkes E.; Gumelar, Gumgum; Ali, Gunawan; Arnowo, Hadi; Dafitri, Haida; Hendri, Halifia; Tuasikal, Hani; Djanggih, Hardianto; Dhika, Harry; Prabowo, Heri; Ahmad, Herlina; Ulya, Himmatul; Novita Sari, Ifit; Khairi Siregar, Ilham; Gunawan Pratama, Indra; Indriyani; Sudahri Damanik, Irfan; Setyawati, Irma; Bempah, Irwan; Setyowidodo, Irwan; Coryanata, Isma; Bolo Rangka, Itsar; Rudiantho Saragih, Jef; Kumaat, Joyce Christian; Sihite, Jubilezer; Sipahelut, Junita; Kadeni; Kamid; Sukiyono, Ketut; Imtihan, Khairul; Husna, Khuriyatul; Nurfitri Sari, Kiky; Kurniawan; Ili, La; Ode Asmin, La; Ode Husen, La; Nailah Zamnah, Lala; Fitriani, Lina; Indriyani Achmad, Listian; Dwi Setia, Lutfiyah; Chairul Basrun Umanailo, M.; Ghufron, M. Ali; Purnama Nduru, Maria; Marsahip; Napratilora, Martina; Yusuf Aditya, Maulana; Andriani, Meri; Madjid, Merla; Aliza Rachmawati, Mira; Rosaliza, Mita; Affaf, Moh.; Rizki Fadhil Pratama, Mohammad; Khairani, Mufida; Purba, Mufria J.; Ardian Kurniawan, Muh.; Shofi, Muh.; Ratodi, Muhamad; Yamin Noch, Muhamad; Affan Ramadhana, Muhammad; Alif, Muhammad; Fajri, Muhammad; Fuad, Muhammad; Nasution, Muhammad Irfan; Khoiruddin Harahap, Muhammad; Luthfi H, Muhammad; Sholahuddin, Muhammad; Murjainah; Mursyid; Mustafa; Akbar, Musthafa; Abi Hamid, Mustofa; Muthmainnah; Nopeline, Nancy; Hartati, Nani; Setyowati, Nanik; Nastia; Nataliningsih; Wayan Nursini, Ni; Afrian Nuari, Nian; Barokati Seliro Wangi, Nisaul; Yessirita, Nita; Nopriadi; Mamuaya, Nova Christian; Susanti, Nova; Kusumawati, Nugrahini; Fauziah Siregar, Nur; Siregar, Nurdiana; Nurhidayah; Nurmawati; Nurussama; Yendri, Okma; Purwaningsih, Okti; Patmawati; Trirahayu Ningrum, Prehatin; Pudentiana Rr, R. E.; Subekti, Purwo; Sukma Kurniawan, Putu; Qashlim; Oktaviance S., R.; Hidayat, Rahmad; Hidayat, Rahmat; Fauzia, Rahmi; Lubis, Rahmi; Kertamukti, Rama; Oktavian, Rama; Dyah Suryaratri, Ratna; Farwati, Ratna; Said, Ratna; Wati Simbolon, Ratna; Yunus, Reni; Sari Dewi, Retno; Rachmadtullah, Reza; Agramanisti Azdy, Rezania; Fatmasari, Rhini; Marginingsih, Ria; Freedom Nanuru, Ricardo; Novia Yanti, Rina; Septiani, Rina; Wikansari, Rinandita

    2018-01-01

    The Ministry of Research, Technology and Higher Education of Indonesia has introduced several national and international indexers of scientific works. This policy becomes a guideline for lecturers and researchers in choosing the reputable publications. This study aimed to describe the understanding level of Indonesian lecturers related to indexing databases, i.e. SINTA, DOAJ, Scopus, Web of Science, and Google Scholar. This research used descriptive design and survey method. The populations in this study were Indonesian lecturers and researchers. The primary data were obtained from a questionnaire filled by 316 lecturers and researchers from 33 Provinces in Indonesia recruited with convenience sampling technique on October-November 2017. The data analysis was performed using frequency distribution tables, cross tabulation and descriptive analysis. The results of this study showed that the understanding of Indonesian lecturers and researchers regarding publications in indexing databases SINTA, DOAJ, Scopus, Web of Science and Google Scholar is that, on average, 66,5% have known about SINTA, DOAJ, Scopus, Web of Science and Google Scholar. However, based on empirical frequency 76% of them have never published with journals or proceedings indexed in Scopus.

  8. Clone - ClEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...le URL: ftp://ftp.biosciencedbc.jp/archive/clest/LATEST/clest_clone.zip File size: 660 KB Simple search URL ...ion Download License Update History of This Database Site Policy | Contact Us Clone - ClEST | LSDB Archive ...

  9. Solubility - eSOL | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...ta file File name: esol.zip File URL: ftp://ftp.biosciencedbc.jp/archive/esol/LAT... License Update History of This Database Site Policy | Contact Us Solubility - eSOL | LSDB Archive ...

  10. Cluster - ClEST | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...e File name: clest_cluster.zip File URL: ftp://ftp.biosciencedbc.jp/archive/clest/LATEST/clest_cluster.zip F...ownload License Update History of This Database Site Policy | Contact Us Cluster - ClEST | LSDB Archive ...

  11. tRNA - RMG | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...File URL: ftp://ftp.biosciencedbc.jp/archive/rmg/LATEST/rmg_trna.zip File size: 1 KB Simple search URL http:...ption Download License Update History of This Database Site Policy | Contact Us tRNA - RMG | LSDB Archive ...

  12. Finding and sharing : new approaches to registries of databases and services for the biomedical sciences

    NARCIS (Netherlands)

    Smedley, Damian; Schofield, Paul; Chen, Chao-Kung; Aidinis, Vassilis; Ainali, Chrysanthi; Bard, Jonathan; Balling, Rudi; Birney, Ewan; Blake, Andrew; Bongcam-Rudloff, Erik; Brookes, Anthony J.; Cesareni, Gianni; Chandras, Christina; Eppig, Janan; Flicek, Paul; Gkoutos, Georgios; Greenaway, Simon; Gruenberger, Michael; Heriche, Jean-Karim; Lyall, Andrew; Mallon, Ann-Marie; Muddyman, Dawn; Reisinger, Florian; Ringwald, Martin; Rosenthal, Nadia; Schughart, Klaus; Swertz, Morris; Thorisson, Gudmundur A.; Zouberakis, Michael; Hancock, John M.

    2010-01-01

    The recent explosion of biological data and the concomitant proliferation of distributed databases make it challenging for biologists and bioinformaticians to discover the best data resources for their needs, and the most efficient way to access and use them. Despite a rapid acceleration in uptake

  13. The linked list of data - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap98 The linked list of data Data detail Data name The linked list of data DOI 10.1890...abase Description Download License Update History of This Database Site Policy | Contact Us The linked list of data - RGP gmap98 | LSDB Archive ...

  14. EST Table - KAIKOcDNA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available tion of data contents List of silkworm ESTs (cDNAs) consisting of publicly available data in addition to sequences registered to publ...ic database as of September 2011. Data file File name: kaiko_cdna_main.zip File URL

  15. RPD link result - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available Description of data contents Results of homology searches against the Rice Proteome Database Data file File ...w/kome_rpd_link_result#en Data acquisition method Performed blastn searches with the full-length cDNA clones

  16. Raw Data (Signal scan format) - PLACE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us PLACE Raw Data (Signal scan format) Data detail Data name Raw Data (Signal scan format) DOI ...10.18908/lsdba.nbdc00168-004 Description of data contents The document in Signal scan format that contains b...History of This Database Site Policy | Contact Us Raw Data (Signal scan format) - PLACE | LSDB Archive ...

  17. Southern images - RGP gmap98 | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap98 Southern images Data detail Data name Southern images DOI 10.18908/lsdba.nbdc0031...ption Download License Update History of This Database Site Policy | Contact Us Southern images - RGP gmap98 | LSDB Archive ...

  18. Rice8987 Array: Gel images - RMOS | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RMOS Rice8987 Array: Gel images Data detail Data name Rice8987 Array: Gel images DOI 10.1890...e by Wako), was used to other Dplate. Gel images were scanned by scanner (Molecular Dynamics Co.). Number of...Database Site Policy | Contact Us Rice8987 Array: Gel images - RMOS | LSDB Archive ...

  19. Southern images - RGP gmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap Southern images Data detail Data name Southern images DOI 10.18908/lsdba.nbdc00318-...nload License Update History of This Database Site Policy | Contact Us Southern images - RGP gmap | LSDB Archive ...

  20. Body weight - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Open...atabase Description Download License Update History of This Database Site Policy | Contact Us Body weight - Open TG-GATEs | LSDB Archive ...

  1. Individual list - Open TG-GATEs | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Open...ion Download License Update History of This Database Site Policy | Contact Us Individual list - Open TG-GATEs | LSDB Archive ...

  2. Download - MicrobeDB.jp | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Mi... data descriptions are about the downloadable data in this page. They might not correspond to the contents o...ense Update History of This Database Site Policy | Contact Us Download - MicrobeDB.jp | LSDB Archive ...

  3. Core - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...10.18908/lsdba.nbdc01530-02-008.V005 Update History V4 - - V3 - - V2 - - V1 - - Description of data contents...se Description Download License Update History of This Database Site Policy | Contact Us Core - NBDC NikkajiRDF | LSDB Archive ...

  4. Download - tRNADB-CE | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us tRNA...rch and download 1 README README_e.html - 2 tRNA sequence data, annotation data a...f This Database Site Policy | Contact Us Download - tRNADB-CE | LSDB Archive ...

  5. The Global Index of Vegetation-Plot Databases 1 (GIVD): a new resource for vegetation science

    NARCIS (Netherlands)

    Dengler, J.; Jansen, F.; Glockler, F.; Schaminee, J.H.J.

    2011-01-01

    Question: How many vegetation plot observations (relevés) are available in electronic databases, how are they geographically distributed, what are their properties and how might they be discovered and located for research and application? Location: Global. Methods: We compiled the Global Index of

  6. ORF Table - KAIKOcDNA | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...a_orf.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kaiko-cdna/LATEST/kaiko_cdna_orf.zip File size: 11 MB...ownload License Update History of This Database Site Policy | Contact Us ORF Table - KAIKOcDNA | LSDB Archive ...

  7. Use of stem cell transplantation to treat epilepsy: A Web of Science-based literature analysis.

    Science.gov (United States)

    Yin, Zhongmin; Dong, Yushu; Zhang, Jiyang; Wang, Li

    2012-11-25

    To identify global research trends in the use of stem cell transplantation to treat epilepsy. We performed a bibliometric analysis of studies on the use of stem cell transplantation to treat epilepsy during 2002-2011, retrieved from Web of Science, using the key words epilepsy or epileptic or epilepticus or seizure and "stem cell". (a) peer-reviewed published articles on the use of stem cell transplantation to treat epilepsy indexed in Web of Science; (b) original research articles, reviews, meeting abstracts, proceedings papers, book chapters, editorial material, and news items. (a) Annual publication output; (b) type of publication; (c) publication by research field; (d) publication by journal; (e) publication by author; (f) publication by country and institution; (g) publications by institution in China; (h) most-cited papers; and (i) papers published by Chinese authors or institutions. A total of 460 publications on the use of stem cell transplantation to treat epilepsy were retrieved from Web of Science, 2002-2011. The number of publications gradually increased over the 10-year study period. Articles and reviews constituted the major types of publications. More than half of the studies were in the field of neuroscience/neurology. The most prolific journals for this topic were Epilepsia, Bone Marrow Transplantation, and Journal of Neuroscience. Of the 460 publications, almost half came from American authors and institutions; relatively few papers were published by Chinese authors or institutions. Literature on stem cell transplantation for epilepsy includes many reports of basic research, but few of clinical trials or treatments. Exact effects are not yet evaluated. Epilepsy rehabilitation is a long-term, complex, and comprehensive system engineering. With advances in medical development, some effective medical, social and educational measures are needed to facilitate patient's treatment and training and accelerate the recovery of life ability, learning ability

  8. All Information Is Not Equal: Using the Literature Databases PubMed and The Cochrane Library for Identifying the Evidence on Granulocyte Transfusion Therapy.

    Science.gov (United States)

    Metzendorf, Maria-Inti; Schulz, Manuela; Braun, Volker

    2014-10-01

    To be able to take well-informed decisions or carry out sound research, clinicians and researchers alike require specific information seeking skills matching their respective information needs. Biomedical information is traditionally available via different literature databases. This article gives an introduction to two diverging sources, PubMed (23 million references) and The Cochrane Library (800,000 references), both of which offer sophisticated instruments for searching an increasing amount of medical publications of varied quality and ambition. Whereas PubMed as an unfiltered source of primary literature comprises all different kinds of publication types occurring in academic journals, The Cochrane Library is a pre-filtered source which offers access to either synthesized publication types or critically appraised and carefully selected references. A search approach has to be carried out deliberately and requires a good knowledge on the scope and features of the databases as well as on the ability to build a search strategy in a structured way. We present a specific and a sensitive search approach, making use of both databases within two application case scenarios in order to identify the evidence on granulocyte transfusions for infections in adult patients with neutropenia.

  9. Twitter Users with Access to Academic Library Services Request Health Sciences Literature through Social Media

    Directory of Open Access Journals (Sweden)

    Elizabeth Margaret Stovold

    2017-09-01

    Full Text Available A Review of: Swab, M., & Romme, K. (2016. Scholarly sharing via Twitter: #icanhazpdf requests for health sciences literature. Journal of the Canadian Health Libraries Association, 37(1, 6-11. http://dx.doi.org/10.5596/c16-009 Abstract Objective – To analyze article sharing requests for health sciences literature on Twitter, received through the #icanhazpdf protocol. Design – Social media content analysis. Setting – Twitter. Subjects – 302 tweets requesting health sciences articles with the #icanhazpdf tag. Methods – The authors used a subscription service called RowFeeder to collect public tweets posted with the hashtag #icanhazpdf between February and April 2015. Rowfeeder recorded the Twitter user name, location, date and time, URL, and content of the tweet. The authors excluded all retweets and then each reviewed one of two sets. They recorded the geographic region and affiliation of the requestor, whether the tweet was a request or comment, type of material requested, how the item was identified, and if the subject of the request was health or non-health. Health requests were further classified using the Scopus subject category of the journal. A journal could be classified with more than one category. Any uncertainties during the coding process were resolved by both authors reviewing the tweet and reaching a consensus. Main results – After excluding all the retweets and comments, 1079 tweets were coded as heath or non-health related. A final set of 302 health related requests were further analyzed. Almost all the requests were for journal articles (99%, n=300. The highest-ranking subject was medicine (64.9%, n=196, and the lowest was dentistry (0.3%, n=1. The most common article identifier was a link to the publisher’s website (50%, n=152, followed by a link to the PubMed record (22%, n=67. Articles were also identified by citation information (11%, n=32, DOI (5%, n=14, a direct request to an individual (3%, n=9, another method

  10. Quantitative Literacy on the Web of Science, 2 – Mining the Health Numeracy Literature for Assessment Items

    Directory of Open Access Journals (Sweden)

    H.L. Vacher

    2009-01-01

    Full Text Available A topic search of the Web of Science (WoS database using the term “numeracy” produced a bibliography of 293 articles, reviews and editorial commentaries (Oct 2008. The citation graph of the bibliography clearly identifies five benchmark papers (1995-2001, four of which developed numeracy assessment instruments. Starting with the 80 papers that cite these benchmarks, we identified a set of 25 papers (1995-2008 in which the medical research community reports the development and/or application of health-numeracy assessments. In all we found 10 assessment instruments from which we have compiled a total of 48 assessment items. There are both general and context-specific tests, with the wide range in the latter illustrated by names such as the Diabetes Numeracy Test and the Asthma Numeracy Questionnaire. There is also a Medical Data Interpretation Test and a Subjective Numeracy Scale. Much of this literature discusses the validity and reliability of the test, and many papers include item-by-item results of the tests from when they were applied in the research reported in the papers. The research that used the tests was directed at exploring such subjects as the patients’ ability to evaluate risks and benefits in order to make informed decisions; to understand and carry out instructions in order to self-manage their medical conditions; and, in research settings, to understand what the researchers were asking in their assessments (e.g., quantified quality of life that require comparison of numerical information. We present the collection of items as a potential resource for educators interested in numeracy assessments in context.

  11. Electronic Grey Literature in Accelerator Science and Its Allied Subjects : Selected Web Resources for Scientists and Engineers

    CERN Document Server

    Rajendiran, P

    2006-01-01

    Grey literature Web resources in the field of accelerator science and its allied subjects are collected for the scientists and engineers of RRCAT (Raja Ramanna Centre for Advanced Technology). For definition purposes the different types of grey literature are described. The Web resources collected and compiled in this article (with an overview and link for each) specifically focus on technical reports, preprints or e-prints, which meet the main information needs of RRCAT users.

  12. Download - D-HaploDB | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available English ]; } else { document.getElementById(lang).innerHTML= '[ Japanese | English ]'; } } window.onload = ...List Contact us D-HaploDB Download First of all, please read the license of this database. Data names and da...ta descriptions are about the downloadable data in this page. They might not correspond to the contents of t...he original database. Click the links on Data Name for descriptions of the data. # Data name File Simple search and dow...t.zip (16.6MB) Simple search and download 3 SNP List (Phase III) dhaplo_d3_snp_list.zip (23.9MB) Simple search and dow

  13. Basic Information - NBDC NikkajiRDF | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...-02-001.V006 No Update V5 10.18908/lsdba.nbdc01530-02-001.V005 Update History V4 10.18908/lsdba.nbdc01530-02-001.V004 Update History... V3 10.18908/lsdba.nbdc01530-02-001.V003 Update History V...2 10.18908/lsdba.nbdc01530-02-001.V002 Update History V1 10.18908/lsdba.nbdc01530-02-001.V001 - Description ...s 132,659,413 triples - About This Database Database Description Download License Update History of This Dat

  14. Gene Name Thesaurus - Gene Name Thesaurus | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available gene names found in various databases and articles to show associations between them. Data file File name: dictionary....zip File URL: ftp://ftp.biosciencedbc.jp/archive/lsdb_gene_thesaurus/LATEST/dictionary...ary. 5. Add non-detected words to the dictionary and repeat 4-5 using other literat...ribe gene names from MEDLINE abstracts and collect unregistered names. 4. Evaluate detection performance of gene names in the diction

  15. All 5' EST - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...n of data contents 5' EST sequences Data file File name: CSV: kome_est_5end_all.zip File URL: ftp://ftp.biosciencedbc.jp/archiv...fasta.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kome_est_5end_...se Description Download License Update History of This Database Site Policy | Contact Us All 5' EST - KOME | LSDB Archive ...

  16. All 3' EST - KOME | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data ...n of data contents 3' EST sequences Data file File name: CSV: kome_est_3end_all.zip File URL: ftp://ftp.biosciencedbc.jp/archiv...fasta.zip File URL: ftp://ftp.biosciencedbc.jp/archive/kome/LATEST/kome_est_3end_...se Description Download License Update History of This Database Site Policy | Contact Us All 3' EST - KOME | LSDB Archive ...

  17. Data Analysis (D) - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...s, etc. Data file File name: metabolonote_data_analysis.zip File URL: ftp://ftp.biosciencedbc.jp/archive/metabolonote/LATEST/metabol...RL http://togodb.biosciencedbc.jp/togodb/view/metabolonote_data_analysis#en Data acquisition method - Data a... Update History of This Database Site Policy | Contact Us Data Analysis (D) - Metabolonote | LSDB Archive ...

  18. Sample Set (SE) - Metabolonote | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available switchLanguage; BLAST Search Image Search Home About Archive Update History Data List Contact us Metabol...ompared with which control, etc. Data file File name: metabolonote_sample_set.zip... File URL: ftp://ftp.biosciencedbc.jp/archive/metabolonote/LATEST/metabolonote_sample_set.zip File size: 41 ...KB Simple search URL http://togodb.biosciencedbc.jp/togodb/view/metabolonote_sample_set#en Data acquisition ...f This Database Site Policy | Contact Us Sample Set (SE) - Metabolonote | LSDB Archive ...

  19. Parameters for Organism Grouping - Gclust Server | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us Gclust Server Parameters for Organism Grouping Data detail Data name Parameters for Organism Group...up number Field 2 Designated value for allocation to organism group Field 3 Group n...his Database Site Policy | Contact Us Parameters for Organism Grouping - Gclust Server | LSDB Archive ... ...: 1KB Simple search URL - Data acquisition method - Data analysis method - Number of data entries - Data item Description Field 1 Gro

  20. Statistics of DNA Markers - RGP gmap | LSDB Archive [Life Science Database Archive metadata

    Lifescience Database Archive (English)

    Full Text Available List Contact us RGP gmap Statistics of DNA Markers Data detail Data name Statistics of DNA Markers DOI 10.18...908/lsdba.nbdc00318-01-001 Description of data contents Statistics of DNA markers that were used to create t...iption Download License Update History of This Database Site Policy | Contact Us Statistics of DNA Markers - RGP gmap | LSDB Archive ...