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Sample records for sars cov infections

  1. Bioinformatics analysis of SARS-Cov M protein provides information for vaccine development

    Institute of Scientific and Technical Information of China (English)

    LIU Wanli; LU Yun; CHEN Yinghua

    2003-01-01

    The pathogen causing severe acute respiratory syndrome (SARS) is identified to be SARS-Cov. It is urgent to know more about SARS-Cov for developing an efficient SARS vaccine to prevent this epidemic disease. In this report, the homology of SARS-Cov M protein to other members of coronavirus is illustrated, and all amino acid changes in both S and M proteins among all available SARS-Cov isolates in GenBank are described. Furthermore, one topological trans-membrane secondary structure model of M protein is proposed, which is corresponded well with the accepted topology model of M proteins of other members of coronavirus. Hydrophilic profile analysis indicated that one region (aa150~210) on the cytoplasmic domain is fairly hydrophilic, suggesting its property of antigenicity. Based on the fact that cytoplasmic domain of the M protein of some other coronavirus could induce protective activities against virus infection, this region might be one potential target for SARS vaccine development.

  2. SARS-like WIV1-CoV poised for human emergence

    Science.gov (United States)

    Menachery, Vineet D.; Yount, Boyd L.; Sims, Amy C.; Debbink, Kari; Agnihothram, Sudhakar S.; Gralinski, Lisa E.; Graham, Rachel L.; Scobey, Trevor; Plante, Jessica A.; Royal, Scott R.; Swanstrom, Jesica; Sheahan, Timothy P.; Pickles, Raymond J.; Corti, Davide; Randell, Scott H.; Lanzavecchia, Antonio; Marasco, Wayne A.; Baric, Ralph S.

    2016-01-01

    Outbreaks from zoonotic sources represent a threat to both human disease as well as the global economy. Despite a wealth of metagenomics studies, methods to leverage these datasets to identify future threats are underdeveloped. In this study, we describe an approach that combines existing metagenomics data with reverse genetics to engineer reagents to evaluate emergence and pathogenic potential of circulating zoonotic viruses. Focusing on the severe acute respiratory syndrome (SARS)-like viruses, the results indicate that the WIV1-coronavirus (CoV) cluster has the ability to directly infect and may undergo limited transmission in human populations. However, in vivo attenuation suggests additional adaptation is required for epidemic disease. Importantly, available SARS monoclonal antibodies offered success in limiting viral infection absent from available vaccine approaches. Together, the data highlight the utility of a platform to identify and prioritize prepandemic strains harbored in animal reservoirs and document the threat posed by WIV1-CoV for emergence in human populations. PMID:26976607

  3. Receptor-binding domain of SARS-Cov spike protein: Soluble expression in purification and functional characterization

    Institute of Scientific and Technical Information of China (English)

    Jing Chen; Lin Miao; Jia-Ming Li; Yan-Ying Li; Qing-Yu Zhu; Chang-Lin Zhou; Hong-Qing Fang; Hui-Peng Chen

    2005-01-01

    AIM: To find a soluble and functional recombinant receptor-binding domain of severe acute respiratory syndrome-associated coronavirus (SARS-Cov), and to analyze its receptor binding ability.METHODS: Three fusion tags (glutathione S-transferase,GST; thioredoxin, Trx; maltose-binding protein, MBP),which preferably contributes to increasing solubility and to facilitating the proper folding of heteroprotein, were used to acquire the soluble and functional expression of RBD protein in Escherichia coli( BL21( DE3 ) and Rosetta-gamiB(DE3) strains). The receptor binding ability of the purified soluble RBD protein was then detected by ELISA and flow cytometry assay.RESULTS: RBD of SARS-Cov spike protein was expressed as inclusion body when fused as TrxA tag form in both BL21 (DE3) and Rosetta-gamiB (DE3) under many different cultures and induction conditions. And there was no visible expression band on SDS-PAGE when RBD was expressed as MBP tagged form. Only GST tagged RBD was soluble expressed in BL21(DE3), and the protein was purified by AKTA Prime Chromatography system. The ELISA data anti-RBD mouse monoclonal antibody 1A5. Further flow cytometry assay demonstrated the high efficiency of RBD's binding ability to ACE2 (angiotensin-converting enzyme 2)positive Vero E6 cell. And ACE2 was proved as a cellular receptor that meditated an initial-affinity interaction with SARS-Cov spike protein. The geometrical mean of GST and respectively.CONCLUSION: In this paper, we get sufficient soluble N terminal GST tagged RBD protein expressed in E. coli BL21(DE3); data from ELISA and flow cytometry assay demonstrate that the recombinant protein is functional and binding to ACE2 positive Vero E6 cell efficiently. And the recombinant RBD derived from E. coli can be used to developing subunit vaccine to block S protein binding with receptor and to neutralizing SARS-Cov infection.

  4. Comparison between SARS CoV and MERS CoV Using Apriori Algorithm, Decision Tree, SVM

    Directory of Open Access Journals (Sweden)

    Jang Seongpil

    2016-01-01

    Full Text Available MERS (Middle East Respiratory Syndrome is a worldwide disease these days. The number of infected people is 1038(08/03/2015 in Saudi Arabia and 186(08/03/2015 in South Korea. MERS is all over the world including Europe and the fatality rate is 38.8%, East Asia and the Middle East. The MERS is also known as a cousin of SARS (Severe Acute Respiratory Syndrome because both diseases show similar symptoms such as high fever and difficulty in breathing. This is why we compared MERS with SARS. We used data of the spike glycoprotein from NCBI. As a way of analyzing the protein, apriori algorithm, decision tree, SVM were used, and particularly SVM was iterated by normal, polynomial, and sigmoid. The result came out that the MERS and the SARS are alike but also different in some way.

  5. Development and validation of a high-throughput screen for inhibitors of SARS CoV and its application in screening of a 100,000-compound library.

    Science.gov (United States)

    Severson, William E; Shindo, Nice; Sosa, Mindy; Fletcher, Thomas; White, E Lucile; Ananthan, Subramaniam; Jonsson, Colleen B

    2007-02-01

    The authors have developed a high-throughput screen (HTS) that allows for the identification of potential inhibitors of the severe acute respiratory syndrome coronavirus (SARS CoV) from large compound libraries. The luminescent-based assay measures the inhibition of SARS CoV-induced cytopathic effect (CPE) in Vero E6 cells. The assay was validated in 96-well plates in a BSL3 containment facility. The assay is sensitive and robust, with Z values > 0.6, signal to background (S/B) > 16, and signal to noise (S/N) > 3. The assay was further validated with 2 different diversity sets of compounds against the SARS CoV. The "hit" rate for both libraries was approximately 0.01%. The validated HTS assay was then employed to screen a 100,000-compound library against SARS CoV. The hit rate for the library in a single-dose format was determined to be approximately 0.8%. Screening of the 3 libraries resulted in the identification of several novel compounds that effectively inhibited the CPE of SARS CoV in vitro-compounds which will serve as excellent lead candidates for further evaluation. At a 10-microM concentration, 3 compounds with selective indexes (SI50) of > 53 were discovered.

  6. DNA Vaccine of SARS-Cov S Gene Induces Antibody Response in Mice

    Institute of Scientific and Technical Information of China (English)

    PingZHAO; Jin-ShanKE; Zhao-LinQIN; HaoREN; Lan-JuanZHAO; Jian-GuoYU

    2004-01-01

    The spike (S) protein, a main surface antigen of SARS-coronavirus (SARS-CoV), is one of the most important antigen candidates for vaccine design. In the present study, three fragments of the truncated S protein were expressed in E.coli, and analyzed with pooled sera of convalescence phase of SARS patients.The full length S gene DNA vaccine was constructed and used to immunize BALB/c mice. The mouse serum IgG antibody against SARS-CoV was measured by ELISA with E.coli expressed truncated S protein or SARS-CoV lysate as diagnostic antigen. The results showed that all the three fragments of S protein expressed by E.coli was able to react with sera of SARS patients and the S gene DNA candidate vaccine could induce the production of specific IgG antibody against SARS-CoV efficiently in mice with seroconversion ratio of 75% after 3 times of immunization. These findings lay some foundations for further understanding the immunology of SARS-CoV and developing SARS vaccines.

  7. DNA Vaccine of SARS-Cov S Gene Induces Antibody Response in Mice

    Institute of Scientific and Technical Information of China (English)

    Ping ZHAO; Jin-Shan KE; Zhao-Lin QIN; Hao REN; Lan-Juan ZHAO; Jian-Guo YU; Jun GAO; Shi-Ying ZHU; Zhong-Tian QI

    2004-01-01

    The spike (S) protein, a main surface antigen of SARS-coronavirus (SARS-CoV), is one of the most important antigen candidates for vaccine design. In the present study, three fragments of the truncated S protein were expressed in E. Coli, and analyzed with pooled sera of convalescence phase of SARS patients.The full length S gene DNA vaccine was constructed and used to immunize BALB/c mice. The mouse serum IgG antibody against SARS-CoV was measured by ELISA with E. Coli expressed truncated S protein or SARS-CoV lysate as diagnostic antigen. The results showed that all the three fragments of S protein expressed by E. Coli was able to react with sera of SARS patients and the S gene DNA candidate vaccine could induce the production of specific IgG antibody against SARS-CoV efficiently in mice with seroconversion ratio of 75% after 3 times of immunization. These findings lay some foundations for further understanding the immunology of SARS-CoV and developing SARS vaccines.

  8. Null Mutations of Group A Streptococcus Orphan Kinase RocA: Selection in Mouse Infection and Comparison with CovS Mutations in Alteration of In Vitro and In Vivo Protease SpeB Expression and Virulence.

    Science.gov (United States)

    Feng, Wenchao; Minor, Dylan; Liu, Mengyao; Li, Jinquan; Ishaq, Suzanne L; Yeoman, Carl; Lei, Benfang

    2017-01-01

    Group A Streptococcus (GAS) acquires mutations of the virulence regulator CovRS in human and mouse infections, and these mutations result in the upregulation of virulence genes and the downregulation of the protease SpeB. To identify in vivo mutants with novel phenotypes, GAS isolates from infected mice were screened by enzymatic assays for SpeB and the platelet-activating factor acetylhydrolase Sse, and a new type of variant that had enhanced Sse expression and normal levels of SpeB production was identified (the variants had a phenotype referred to as enhanced Sse activity [Sse(A+)] and normal SpeB activity [SpeB(A+)]). Sse(A+) SpeB(A+) variants had transcript levels of CovRS-controlled virulence genes comparable to those of a covS mutant but had no covRS mutations. Genome resequencing of an Sse(A+) SpeB(A+) isolate identified a C605A nonsense mutation in orphan kinase gene rocA, and 6 other Sse(A+) SpeB(A+) isolates also had nonsense mutations or small indels in rocA RocA and CovS mutants had similar levels of enhancement of the expression of CovRS-controlled virulence genes at the exponential growth phase; however, mutations of RocA but not mutations of CovS did not result in the downregulation of speB transcription at stationary growth phase or in subcutaneous infection of mice. GAS with RocA and CovS mutations caused greater enhancement of the expression of hasA than spyCEP in mouse skin infection than wild-type GAS did. RocA mutants ranked between wild-type GAS and CovS mutants in skin invasion, inhibition of neutrophil recruitment, and virulence in subcutaneous infection of mice. Thus, GAS RocA mutants can be selected in subcutaneous infections in mice and exhibit gene expression patterns and virulences distinct from those of CovS mutants. The findings provide novel information for understanding GAS fitness mutations in vivo, virulence gene regulation, in vivo gene expression, and virulence. Copyright © 2016 American Society for Microbiology.

  9. CLONING SEGMENT SPIKE PROTEIN GENE OF SARS-COV AND ITS EXPRESSION IN ESCHERICHIA COLI

    Institute of Scientific and Technical Information of China (English)

    刘中华; 许文波; 毛乃颖; 张燕; 朱贞; 崔爱利; 杨建国; 胡海涛

    2004-01-01

    Objective Expressing and purifying the segment of SARS-CoV spike protein in E.Coli. Methods The target gene was obtained by RT-PCR. The PCR product was cloned into pEGM- T Easy Vector, sequencing and double restriction digestion ( BamHⅠ,PstⅠ) were performed. The target gene was subcloned into PQE30 expression vector. The gene was expressed in the E.coli strain M15 cells induced by IPTG. The protein was purified with a nickel HiTrap chelating metal affinity column. Results The recombinant expression plasmid was successfully constructed and the protein was well expressed in E. coli strain M15 cells. The ideal pure protein was obtained by purification. Western blotting analysis suggested the protein could act with the convalescent sera of lab confirmed SARS patients. Conclusion The segment of SARS-CoV spike protein was well expressed and purified, and can be applied in diagnosis and immunological research of SARS.

  10. Immunological Responses against SARS-Coronavirus Infection in Humans

    Institute of Scientific and Technical Information of China (English)

    Xiaojun Xu; Xiao-Ming Gao

    2004-01-01

    Since the outbreak of a SARS epidemic last year, significant advances have been made on our understanding of the mechanisms of interaction between the SARS coronavirus (CoV) and the immune system. Strong humoral responses have been found in most patients following SARS-CoV infection, with high titers of neutralizing Abspresent in their convalescent sera. The nucleocapsid (N) and spike (S) proteins of SARS-CoV appear to be the dominant antigens recognized by serum Abs. CD4+ T cell responses against the N protein have been observed in SARS patients and an HLA-A2-restricted cytotoxic T lymphocyte epitope in the S protein has been identified.It is likely that the immune responses induced by SARS-CoV infection could also cause pathological damage to the host, especially in the case of proinflammatory cytokines. There is also evidence suggesting that SARS-CoV might be able to directly invade cells of the immune system. Our understanding on the interaction between SARS-CoV, the immune system and local tissues is essential to future diagnosis, control and treatment of this very contagious disease.

  11. Immunological Responses against SARS-Coronavirus Infection in Humans

    Institute of Scientific and Technical Information of China (English)

    XiaojunXu; Xiao-MingGao

    2004-01-01

    Since the outbreak of a SARS epidemic last year, significant advances have been made on our understanding of the mechanisms of interaction between the SARS coronavirus (CoV) and the immune system. Strong humoral responses have been found in most patients following SARS-CoV infection, with high titers of neutralizing Abs present in their convalescent sera. The nucleocapsid (N) and spike (S) proteins of SARS-CoV appear to be the dominant antigens recognized by serum Abs. CD4+ T cell responses against the N protein have been observed in SARS patients and an HLA-A2-restricted cytotoxic T lymphocyte epitope in the S protein has been identified. It is likely that the immune responses induced by SARS-CoV infection could also cause pathological damage to the host, especially in the case of proinflammatory cytokines. There is also evidence suggesting that SARS-CoV might be able to directly invade cells of the immune system. Our understanding on the interaction between SARS-CoV, the immune system and local tissues is essential to future diagnosis, control and treatment of this very contagious disease. Cellular & Molecular Immunology. 2004;1(2):119-122.

  12. Lack of Innate Interferon Responses during SARS Coronavirus Infection in a Vaccination and Reinfection Ferret Model

    Science.gov (United States)

    Cameron, Mark J.; Kelvin, Alyson A.; Leon, Alberto J.; Cameron, Cheryl M.; Ran, Longsi; Xu, Luoling; Chu, Yong-Kyu; Danesh, Ali; Fang, Yuan; Li, Qianjun; Anderson, Austin; Couch, Ronald C.; Paquette, Stephane G.; Fomukong, Ndingsa G.; Kistner, Otfried; Lauchart, Manfred; Rowe, Thomas; Harrod, Kevin S.; Jonsson, Colleen B.; Kelvin, David J.

    2012-01-01

    In terms of its highly pathogenic nature, there remains a significant need to further define the immune pathology of SARS-coronavirus (SARS-CoV) infection, as well as identify correlates of immunity to help develop vaccines for severe coronaviral infections. Here we use a SARS-CoV infection-reinfection ferret model and a functional genomics approach to gain insight into SARS immunopathogenesis and to identify correlates of immune protection during SARS-CoV-challenge in ferrets previously infected with SARS-CoV or immunized with a SARS virus vaccine. We identified gene expression signatures in the lungs of ferrets associated with primary immune responses to SARS-CoV infection and in ferrets that received an identical second inoculum. Acute SARS-CoV infection prompted coordinated innate immune responses that were dominated by antiviral IFN response gene (IRG) expression. Reinfected ferrets, however, lacked the integrated expression of IRGs that was prevalent during acute infection. The expression of specific IRGs was also absent upon challenge in ferrets immunized with an inactivated, Al(OH)3-adjuvanted whole virus SARS vaccine candidate that protected them against SARS-CoV infection in the lungs. Lack of IFN-mediated immune enhancement in infected ferrets that were previously inoculated with, or vaccinated against, SARS-CoV revealed 9 IRG correlates of protective immunity. This data provides insight into the molecular pathogenesis of SARS-CoV and SARS-like-CoV infections and is an important resource for the development of CoV antiviral therapeutics and vaccines. PMID:23029269

  13. SARS Pathogenesis: Host Factors

    NARCIS (Netherlands)

    A. de Lang (Anna)

    2012-01-01

    textabstractWhile it is hypothesized that Sever Acute Respiratory Syndrome (SARS) in humans is caused by a disproportional immune response illustrated by inappropriate induction of inflammatory cytokines, the exact nature of the host response to SARS coronavirus (CoV) infection causing severe

  14. Inactivation of the CovR/S virulence regulator impairs infection in an improved murine model of Streptococcus pyogenes naso-pharyngeal infection.

    Science.gov (United States)

    Alam, Faraz M; Turner, Claire E; Smith, Ken; Wiles, Siouxsie; Sriskandan, Shiranee

    2013-01-01

    Streptococcus pyogenes is a leading cause of pharyngeal infection, with an estimated 616 million cases per year. The human nasopharynx represents the major reservoir for all S. pyogenes infection, including severe invasive disease. To investigate bacterial and host factors that influence S. pyogenes infection, we have devised an improved murine model of nasopharyngeal colonization, with an optimized dosing volume to avoid fulminant infections and a sensitive host strain. In addition we have utilized a refined technique for longitudinal monitoring of bacterial burden that is non-invasive thereby reducing the numbers of animals required. The model was used to demonstrate that the two component regulatory system, CovR/S, is required for optimum infection and transmission from the nasopharynx. There is a fitness cost conferred by covR/S mutation that is specific to the nasopharynx. This may explain why S. pyogenes with altered covR/S have not become prevalent in community infections despite possessing a selective advantage in invasive infection.

  15. CovS Simultaneously Activates and Inhibits the CovR-Mediated Repression of Distinct Subsets of Group A Streptococcus Virulence Factor-Encoding Genes▿ †

    OpenAIRE

    Treviño, Jeanette; Perez, Nataly; Ramirez-Peña, Esmeralda; Liu, Zhuyun; Shelburne, Samuel A.; Musser, James M.; Sumby, Paul

    2009-01-01

    To colonize and cause disease at distinct anatomical sites, bacterial pathogens must tailor gene expression in a microenvironment-specific manner. The molecular mechanisms that control the ability of the human bacterial pathogen group A Streptococcus (GAS) to transition between infection sites have yet to be fully elucidated. A key regulator of GAS virulence gene expression is the CovR-CovS two-component regulatory system (also known as CsrR-CsrS). covR and covS mutant strains arise spontaneo...

  16. SARS-CoV-Encoded Small RNAs Contribute to Infection-Associated Lung Pathology.

    Science.gov (United States)

    Morales, Lucía; Oliveros, Juan Carlos; Fernandez-Delgado, Raúl; tenOever, Benjamin Robert; Enjuanes, Luis; Sola, Isabel

    2017-03-08

    Severe acute respiratory syndrome coronavirus (SARS-CoV) causes lethal disease in humans, which is characterized by exacerbated inflammatory response and extensive lung pathology. To address the relevance of small non-coding RNAs in SARS-CoV pathology, we deep sequenced RNAs from the lungs of infected mice and discovered three 18-22 nt small viral RNAs (svRNAs). The three svRNAs were derived from the nsp3 (svRNA-nsp3.1 and -nsp3.2) and N (svRNA-N) genomic regions of SARS-CoV. Biogenesis of CoV svRNAs was RNase III, cell type, and host species independent, but it was dependent on the extent of viral replication. Antagomir-mediated inhibition of svRNA-N significantly reduced in vivo lung pathology and pro-inflammatory cytokine expression. Taken together, these data indicate that svRNAs contribute to SARS-CoV pathogenesis and highlight the potential of svRNA-N antagomirs as antivirals. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. The spike protein of severe acute respiratory syndrome (SARS) is cleaved in virus infected Vero-E6 cells

    Institute of Scientific and Technical Information of China (English)

    2004-01-01

    Spike protein is one of the major structural proteins of severe acute respiratory syndrome-coronavirus. It is essential for the interaction of the virons with host cell receptors and subsequent fusion of the viral envelop with host cell membrane to allow infection. Some spike proteins of coronavirus, such as MHV, HCoV-OC43, AIBV and BcoV, are proteolytically cleaved into two subunits, S1 and S2. In contrast, TGV, FIPV and HCoV-229E are not. Many studies have shown that the cleavage of spike protein seriously affects its function. In order to investigate the maturation and proteolytic processing of the S protein of SARS CoV, we generated S1 and S2 subunit specific antibodies (Abs) as well as N, E and 3CL protein-specific Abs. Our results showed that the antibodies could efficiently and specifically bind to their corresponding proteins from E. coli expressed or lysate of SARS-CoV infected Vero-E6 cells by Western blot analysis. Furthermore, the anti-S 1 and S2 Abs were proved to be capable of binding to SARS CoV under electron microscope observation. When S2 Ab was used to perform immune precipitation with lysate of SARS-CoV infected cells, a cleaved S2 fragment was detected with S2-specific mAb by Western blot analysis. The data demonstrated that the cleavage of S protein was observed in the lysate, indicating that proteolytic processing of S protein is present in host cells.

  18. Reconstruction of the most recent common ancestor sequences of SARS-Cov S gene and detection of adaptive evolution in the spike protein

    Institute of Scientific and Technical Information of China (English)

    ZHANG Yuan; ZHENG Nan; HAO Pei; ZHONG Yang

    2004-01-01

    @@ The genome organization and expression strategy of severe acute respiratory syndrome coronavirus (SARSCoV) have been described extensivelyl1- 10]. As a structural glycoprotein on the virion surface, the spike protein is responsible for binding to host cellular receptors and for the fusion between the viral envelope and the cellular membrane. It also induces neutralizing antibodies in the host and mediates cellular immunity[11]. Previous studies suggested that amino acid replacements in the spike protein could dramatically alter the pathogenesis and virulence of some coronaviruses[11]. It is therefore reasonable to test the hypothesis that radical amino acid replacements in the spike protein, favored by environmental selective pressure during the process of SARS-CoV interspecific transmission[10], might make this pathogen adapt to a new host. In this study, we investigated a total of 108complete sequences of the SARS-CoV S gene from GenBank (until March 23, 2004). After omission of those records containing frame-shift mutations or low quality sequences, e.g. ZJ01, and selection of one sequence for identical records, an alignment of 42 sequences was obtained using the program Clustal-X[13]. Then, we reconstructed the most recent common ancestor (MRCA) sequences of the SARS-CoV S gene and detected the adaptive evolution in the spike protein.

  19. Cell host response to infection with novel human coronavirus EMC predicts potential antivirals and important differences with SARS coronavirus.

    Science.gov (United States)

    Josset, Laurence; Menachery, Vineet D; Gralinski, Lisa E; Agnihothram, Sudhakar; Sova, Pavel; Carter, Victoria S; Yount, Boyd L; Graham, Rachel L; Baric, Ralph S; Katze, Michael G

    2013-04-30

    A novel human coronavirus (HCoV-EMC) was recently identified in the Middle East as the causative agent of a severe acute respiratory syndrome (SARS) resembling the illness caused by SARS coronavirus (SARS-CoV). Although derived from the CoV family, the two viruses are genetically distinct and do not use the same receptor. Here, we investigated whether HCoV-EMC and SARS-CoV induce similar or distinct host responses after infection of a human lung epithelial cell line. HCoV-EMC was able to replicate as efficiently as SARS-CoV in Calu-3 cells and similarly induced minimal transcriptomic changes before 12 h postinfection. Later in infection, HCoV-EMC induced a massive dysregulation of the host transcriptome, to a much greater extent than SARS-CoV. Both viruses induced a similar activation of pattern recognition receptors and the interleukin 17 (IL-17) pathway, but HCoV-EMC specifically down-regulated the expression of several genes within the antigen presentation pathway, including both type I and II major histocompatibility complex (MHC) genes. This could have an important impact on the ability of the host to mount an adaptive host response. A unique set of 207 genes was dysregulated early and permanently throughout infection with HCoV-EMC, and was used in a computational screen to predict potential antiviral compounds, including kinase inhibitors and glucocorticoids. Overall, HCoV-EMC and SARS-CoV elicit distinct host gene expression responses, which might impact in vivo pathogenesis and could orient therapeutic strategies against that emergent virus. Identification of a novel coronavirus causing fatal respiratory infection in humans raises concerns about a possible widespread outbreak of severe respiratory infection similar to the one caused by SARS-CoV. Using a human lung epithelial cell line and global transcriptomic profiling, we identified differences in the host response between HCoV-EMC and SARS-CoV. This enables rapid assessment of viral properties and the

  20. Understanding the T cell immune response in SARS coronavirus infection.

    Science.gov (United States)

    Janice Oh, Hsueh-Ling; Ken-En Gan, Samuel; Bertoletti, Antonio; Tan, Yee-Joo

    2012-09-01

    The severe acute respiratory syndrome (SARS) epidemic started in late 2002 and swiftly spread across 5 continents with a mortality rate of around 10%. Although the epidemic was eventually controlled through the implementation of strict quarantine measures, there continues a need to investigate the SARS coronavirus (SARS-CoV) and develop interventions should it re-emerge. Numerous studies have shown that neutralizing antibodies against the virus can be found in patients infected with SARS-CoV within days upon the onset of illness and lasting up to several months. In contrast, there is little data on the kinetics of T cell responses during SARS-CoV infection and little is known about their role in the recovery process. However, recent studies in mice suggest the importance of T cells in viral clearance during SARS-CoV infection. Moreover, a growing number of studies have investigated the memory T cell responses in recovered SARS patients. This review covers the available literature on the emerging importance of T cell responses in SARS-CoV infection, particularly on the mapping of cytotoxic T lymphocyte (CTL) epitopes, longevity, polyfunctionality and human leukocyte antigen (HLA) association as well as their potential implications on treatment and vaccine development.

  1. Regulation of streptokinase expression by CovR/S in Streptococcus pyogenes: CovR acts through a single high-affinity binding site.

    Science.gov (United States)

    Churchward, Gordon; Bates, Christopher; Gusa, Asiya A; Stringer, Virginia; Scott, June R

    2009-02-01

    The important human pathogen Streptococcus pyogenes (the group A streptococcus or GAS) produces many virulence factors that are regulated by the two-component signal transduction system CovRS (CsrRS). Dissemination of GAS infection originating at the skin has been shown to require production of streptokinase, whose transcription is repressed by CovR. In this work we have studied the interaction of CovR and phosphorylated CovR (CovR-P) with the promoter for streptokinase, Pska. We found that, in contrast to the other CovR-repressed promoters, Pska regulation by CovR occurs through binding at a single ATTARA consensus binding sequence (CB) that overlaps the -10 region of the promoter. Binding of CovR to other nearby consensus sequences occurs upon phosphorylation of the protein, but these other CBs do not contribute to the regulation of Pska by CovR. Thus, binding at a specific site does not necessarily indicate that the site is involved in regulation by CovR. In addition, at Pska, CovR binding to the different sites does not appear to involve cooperative interactions, which simplifies the analysis of CovR binding and gives us insight into the modes of interaction that occur between CovR and its specific DNA-binding sites. Finally, the observation that regulation of transcription from Pska occurs at a very low concentration of phosphorylated CovR may have important implications for the regulation of virulence gene expression during GAS infection.

  2. Anti-SARS coronavirus agents: a patent review (2008 - present).

    Science.gov (United States)

    Kumar, Vathan; Jung, Young-Sik; Liang, Po-Huang

    2013-10-01

    A novel coronavirus (CoV), unlike previous typical human coronaviruses (HCoVs), was identified as causative agent for severe acute respiratory syndrome (SARS). SARS first surfaced as a pandemic in late 2002 and originated in southern China. SARS-CoV rapidly spread to > 30 countries by 2003, infecting nearly 8,000 people and causing around 800 fatalities. After 10 years of silence, a 2012 report alarmed researchers about the emergence of a new strain of CoV causing SARS-like disease. To combat SARS, scientists applied for patents on various therapeutic agents, including small-molecule inhibitors targeting the essential proteases, helicase and other proteins of the virus, natural products, approved drugs, molecules binding to the virus, neutralizing antibodies, vaccines, anti-sense RNA, siRNA and ribozyme against SARS-CoV. In this article, the patents published from 2008 to the present for the new therapeutics that could potentially be used in the prophylaxis and treatment of SARS are reviewed. The therapeutic interventions or prophylaxis discussed in this review seems to offer promising solutions to tackle SARS. Rather than being complacent about the results, we should envisage how to transform them into drug candidates that may be useful in combating SARS and related viral infections in the future.

  3. Receptor recognition and cross-species infections of SARS coronavirus.

    Science.gov (United States)

    Li, Fang

    2013-10-01

    Receptor recognition is a major determinant of the host range, cross-species infections, and pathogenesis of the severe acute respiratory syndrome coronavirus (SARS-CoV). A defined receptor-binding domain (RBD) in the SARS-CoV spike protein specifically recognizes its host receptor, angiotensin-converting enzyme 2 (ACE2). This article reviews the latest knowledge about how RBDs from different SARS-CoV strains interact with ACE2 from several animal species. Detailed research on these RBD/ACE2 interactions has established important principles on host receptor adaptations, cross-species infections, and future evolution of SARS-CoV. These principles may apply to other emerging animal viruses, including the recently emerged Middle East respiratory syndrome coronavirus (MERS-CoV). This paper forms part of a series of invited articles in Antiviral Research on "From SARS to MERS: 10years of research on highly pathogenic human coronaviruses". Copyright © 2013 Elsevier B.V. All rights reserved.

  4. SARS Patients-derived Human Recombinant Antibodies to S and M Proteins Efficiently Neutralize SARS-Coronavirus Infectivity

    Institute of Scientific and Technical Information of China (English)

    MI-FANG LIANG; KONG-XING WU; ZHAO-HUI XIONG; QI JIN; DE-XIN LI; RUN-LEI DU; JING-ZHI LIU; CHUAN LI; QUAN-FU ZHANG; LU-LU HAN; JIAN-SHI YU; SHU-MIN DUAN; XIAO-FANG WANG

    2005-01-01

    Objective To develop a specific SARS virus-targeted antibody preparation for emergent prophylaxis and treatment of SARS virus infection. Methods By using phage display technology, we constructed a naive antibody library from convalescent SARS patient lymphocytes. To obtain the neutralizing antibody to SARS virus surface proteins, the library panning procedure was performed on purified SARS virions and the specific Fab antibody clones were enriched by four rounds of repeated panning procedure and screened by highthroughput selection. The selected Fab antibodies expressed in the periplasma of E. Coli were soluble and further purified and tested for their binding properties and antiviral function to SARS virus. The functional Fab antibodies were converted to full human IgG antibodies with recombinant baculovirus/insect cell systems and their neutralizing activities were further determined. Results After four rounds of the panning, a number of SARS-CoV virus-targeted human recombinant Fab antibodies were isolated from the SARS patient antibody library. Most of these were identified to recognize both natural and recombinant SARS spike (S) proteins, two Fab antibodies were specific for the virus membrane (M) protein, only one bound to SARS-CoV nucleocapsid protein. The SARS-CoV S and M protein-targeted Fab or IgG antibodies showed significant neutralizing activities in cytopathic effect (CPE) inhibition neutralization test, these antibodies were able to completely neutralize the SARS virus and protect the Vero cells from CPE after virus infection. However, the N protein-targeted Fab or IgG antibodies failed to neutralize the virus. In addition, the SARS N protein-targeted human Fab antibody reacted with the denatured N proteins, whereas none of the S and M protein specific neutralizing antibodies did. These results suggested that the S and M protein-specific neutralizing antibodies could recognize conformational epitopes which might be involved in the binding of virions

  5. Infection of SARS-CoV on juvenile and adult Brandt's vole Microtus brandtii

    Institute of Scientific and Technical Information of China (English)

    GAO Hong; PENG Jingpian; DENG Wei; SHI Dazhao; BAO Linlin; WANG Dehua; ZHANG Binglin; QIN Chuan; ZHANG Zhibin

    2005-01-01

    We studied the infectious effect of SARS-CoV virus on juvenile and adult Brandt's Vole (Microtus brandtii) by nasal cavity spraying method (CCID50 is 105.7). SARS virus caused serious deaths in adults. The death adults demonstrated hemorrhage from mouth, nasal cavity and intestine, hemorrhageious interstitial pneumonia and gore in liver, spleen and kidney. The survival adults demonstrated local hemorrhagic spot in lung and emphysema, but the other organs showed no pathological abnormality. SARS virus caused no deaths in juveniles, but locomotion of infected juveniles became slower. In the early stage, there was local pneumonia in lung and SARS viruses were isolated from the pathological tissue. Only one control juvenile lived and the infected juvenile showed local pneumonia in lung. The results demonstrated that SARS-CoV infected Brandt's vole seriously and adults were more susceptive to SARS-CoV than juveniles. The Brandt's vole may be a potential animal model for SARS research.

  6. Antibody-dependent SARS coronavirus infection is mediated by antibodies against spike proteins.

    Science.gov (United States)

    Wang, Sheng-Fan; Tseng, Sung-Pin; Yen, Chia-Hung; Yang, Jyh-Yuan; Tsao, Ching-Han; Shen, Chun-Wei; Chen, Kuan-Hsuan; Liu, Fu-Tong; Liu, Wu-Tse; Chen, Yi-Ming Arthur; Huang, Jason C

    2014-08-22

    The severe acute respiratory syndrome coronavirus (SARS-CoV) still carries the potential for reemergence, therefore efforts are being made to create a vaccine as a prophylactic strategy for control and prevention. Antibody-dependent enhancement (ADE) is a mechanism through which dengue viruses, feline coronaviruses, and HIV viruses take advantage of anti-viral humoral immune responses to infect host target cells. Here we describe our observations of SARS-CoV using ADE to enhance the infectivity of a HL-CZ human promonocyte cell line. Quantitative-PCR and immunofluorescence staining results indicate that SARS-CoV is capable of replication in HL-CZ cells, and of displaying virus-induced cytopathic effects and increased levels of TNF-α, IL-4 and IL-6 two days post-infection. According to flow cytometry data, the HL-CZ cells also expressed angiotensin converting enzyme 2 (ACE2, a SARS-CoV receptor) and higher levels of the FcγRII receptor. We found that higher concentrations of anti-sera against SARS-CoV neutralized SARS-CoV infection, while highly diluted anti-sera significantly increased SARS-CoV infection and induced higher levels of apoptosis. Results from infectivity assays indicate that SARS-CoV ADE is primarily mediated by diluted antibodies against envelope spike proteins rather than nucleocapsid proteins. We also generated monoclonal antibodies against SARS-CoV spike proteins and observed that most of them promoted SARS-CoV infection. Combined, our results suggest that antibodies against SARS-CoV spike proteins may trigger ADE effects. The data raise new questions regarding a potential SARS-CoV vaccine, while shedding light on mechanisms involved in SARS pathogenesis. Copyright © 2014 Elsevier Inc. All rights reserved.

  7. Simultaneous isolation of emm89-type Streptococcus pyogenes strains with a wild-type or mutated covS gene from a single streptococcal toxic shock syndrome patient.

    Science.gov (United States)

    Masuno, Katsuaki; Okada, Ryo; Zhang, Yan; Isaka, Masanori; Tatsuno, Ichiro; Shibata, Shinichiro; Hasegawa, Tadao

    2014-04-01

    Streptococcal toxic shock syndrome (STSS) is a re-emerging infectious disease in many developed countries. Recent studies have suggested that mutations in CovRS, a two-component regulatory system in Streptococcus pyogenes, play important roles in the pathogenesis of STSS. However, in vivo evidence of the significance of CovRS in human infections has not been fully demonstrated. We investigated five S. pyogenes strains isolated simultaneously from the pharynx, sputum, knee joint, cerebrospinal fluid and blood of a single STSS patient. All were emm89-type strains, and multilocus sequence typing (MLST) analysis revealed that the strains of pharynx and blood were isogenic. The growth rates of the strains from pharynx and sputum were faster than those of the other strains. Protein profiles of the culture supernatants of strains from the pharynx and sputum were also different from those of the other strains. Sequence analyses revealed that strains from the knee joint, cerebrospinal fluid and blood contained a single nucleotide difference in the covS coding region, resulting in one amino acid change, compared with the other strains. Introduction of a plasmid containing the covS gene from the pharynx strain to the blood strain increased the production of SpeB protein. This suggests that the one amino acid alteration in CovS was relevant to pathogenesis. This report supports the idea that mutated CovS plays important roles in vivo in the dissemination of S. pyogenes from the upper respiratory tract of human to aseptic tissues such as blood and cerebrospinal fluid.

  8. Coronavirus virulence genes with main focus on SARS-CoV envelope gene.

    Science.gov (United States)

    DeDiego, Marta L; Nieto-Torres, Jose L; Jimenez-Guardeño, Jose M; Regla-Nava, Jose A; Castaño-Rodriguez, Carlos; Fernandez-Delgado, Raul; Usera, Fernando; Enjuanes, Luis

    2014-12-19

    Coronavirus (CoV) infection is usually detected by cellular sensors, which trigger the activation of the innate immune system. Nevertheless, CoVs have evolved viral proteins that target different signaling pathways to counteract innate immune responses. Some CoV proteins act as antagonists of interferon (IFN) by inhibiting IFN production or signaling, aspects that are briefly addressed in this review. After CoV infection, potent cytokines relevant in controlling virus infections and priming adaptive immune responses are also generated. However, an uncontrolled induction of these proinflammatory cytokines can lead to pathogenesis and disease severity as described for SARS-CoV and MERS-CoV. The cellular pathways mediated by interferon regulatory factor (IRF)-3 and -7, activating transcription factor (ATF)-2/jun, activator protein (AP)-1, nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB), and nuclear factor of activated T cells (NF-AT), are the main drivers of the inflammatory response triggered after viral infections, with NF-κB pathway the most frequently activated. Key CoV proteins involved in the regulation of these pathways and the proinflammatory immune response are revisited in this manuscript. It has been shown that the envelope (E) protein plays a variable role in CoV morphogenesis, depending on the CoV genus, being absolutely essential in some cases (genus α CoVs such as TGEV, and genus β CoVs such as MERS-CoV), but not in others (genus β CoVs such as MHV or SARS-CoV). A comprehensive accumulation of data has shown that the relatively small E protein elicits a strong influence on the interaction of SARS-CoV with the host. In fact, after infection with viruses in which this protein has been deleted, increased cellular stress and unfolded protein responses, apoptosis, and augmented host immune responses were observed. In contrast, the presence of E protein activated a pathogenic inflammatory response that may cause death in animal

  9. The inhibitory effect of Chinese herb on SARS virus infection

    Institute of Scientific and Technical Information of China (English)

    Rika; Furuta; Jyunichi; Fujisawa; Toshio; Hattori

    2005-01-01

    [Subject]Severe acute respiratory syndrome(SARS)is a contagious atypical pneumonia with a high mortality rate.SARS coronavirus(SARS-CoV)is the pathogenof SARS.We established SARS-CoVS/HIVpseudotyped(SHP)virussystemandthe cell fusion assay systemto screeninhibitors for entry of SARS-CoV.[Materials and methods]SHPor VSV-Gpseudotype(VHP)virus was made bytransfecting pCMVΔR8·2,pHR’CMV-Luc and pCMV/R-SARS-S or pMDGplasmids into293Tcells.5ng p24of SHPor VHPvirus was addedfor eachinfec-tion.Twelve Chinese herbs,wh...

  10. A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence.

    Science.gov (United States)

    Menachery, Vineet D; Yount, Boyd L; Debbink, Kari; Agnihothram, Sudhakar; Gralinski, Lisa E; Plante, Jessica A; Graham, Rachel L; Scobey, Trevor; Ge, Xing-Yi; Donaldson, Eric F; Randell, Scott H; Lanzavecchia, Antonio; Marasco, Wayne A; Shi, Zhengli-Li; Baric, Ralph S

    2015-12-01

    The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome (MERS)-CoV underscores the threat of cross-species transmission events leading to outbreaks in humans. Here we examine the disease potential of a SARS-like virus, SHC014-CoV, which is currently circulating in Chinese horseshoe bat populations. Using the SARS-CoV reverse genetics system, we generated and characterized a chimeric virus expressing the spike of bat coronavirus SHC014 in a mouse-adapted SARS-CoV backbone. The results indicate that group 2b viruses encoding the SHC014 spike in a wild-type backbone can efficiently use multiple orthologs of the SARS receptor human angiotensin converting enzyme II (ACE2), replicate efficiently in primary human airway cells and achieve in vitro titers equivalent to epidemic strains of SARS-CoV. Additionally, in vivo experiments demonstrate replication of the chimeric virus in mouse lung with notable pathogenesis. Evaluation of available SARS-based immune-therapeutic and prophylactic modalities revealed poor efficacy; both monoclonal antibody and vaccine approaches failed to neutralize and protect from infection with CoVs using the novel spike protein. On the basis of these findings, we synthetically re-derived an infectious full-length SHC014 recombinant virus and demonstrate robust viral replication both in vitro and in vivo. Our work suggests a potential risk of SARS-CoV re-emergence from viruses currently circulating in bat populations.

  11. Coronaviridae and SARS-associated Coronavirus Strain HSR1

    Science.gov (United States)

    Canducci, Filippo; Pinna, Debora; Mancini, Nicasio; Carletti, Silvia; Lazzarin, Adriano; Bordignon, Claudio; Poli, Guido; Clementi, Massimo

    2004-01-01

    During the recent severe acute respiratory (SARS) outbreak, the etiologic agent was identified as a new coronavirus (CoV). We have isolated a SARS-associated CoV (SARS-CoV) strain by injecting Vero cells with a sputum specimen from an Italian patient affected by a severe pneumonia; the patient traveled from Vietnam to Italy in March 2003. Ultrastructural analysis of infected Vero cells showed the virions within cell vesicles and around the cell membrane. The full-length viral genome sequence was similar to those derived from the Hong-Kong Hotel M isolate. By using both real-time reverse transcription–polymerase chain reaction TaqMan assay and an infectivity plaque assay, we determined that approximately 360 viral genomes were required to generate a PFU. In addition, heparin (100 μg/mL) inhibited infection of Vero cells by 50%. Overall, the molecular and biologic characteristics of the strain HSR1 provide evidence that SARS-CoV forms a fourth genetic coronavirus group with distinct genomic and biologic features. PMID:15109406

  12. Phagocytic cells contribute to the antibody-mediated elimination of pulmonary-infected SARS coronavirus.

    Science.gov (United States)

    Yasui, Fumihiko; Kohara, Michinori; Kitabatake, Masahiro; Nishiwaki, Tetsu; Fujii, Hideki; Tateno, Chise; Yoneda, Misako; Morita, Kouichi; Matsushima, Kouji; Koyasu, Shigeo; Kai, Chieko

    2014-04-01

    While the 2002-2003 outbreak of severe acute respiratory syndrome (SARS) resulted in 774 deaths, patients who were affected with mild pulmonary symptoms successfully recovered. The objective of the present work was to identify, using SARS coronavirus (SARS-CoV) mouse infection models, immune factors responsible for clearing of the virus. The elimination of pulmonary SARS-CoV infection required the activation of B cells by CD4(+) T cells. Furthermore, passive immunization (post-infection) with homologous (murine) anti-SARS-CoV antiserum showed greater elimination efficacy against SARS-CoV than that with heterologous (rabbit) antiserum, despite the use of equivalent titers of neutralizing antibodies. This distinction was mediated by mouse phagocytic cells (monocyte-derived infiltrating macrophages and partially alveolar macrophages, but not neutrophils), as demonstrated both by adoptive transfer from donors and by immunological depletion of selected cell types. These results indicate that the cooperation of anti-SARS-CoV antibodies and phagocytic cells plays an important role in the elimination of SARS-CoV. Copyright © 2014 Elsevier Inc. All rights reserved.

  13. Death of a SARS case from secondary aspergillus infection

    Institute of Scientific and Technical Information of China (English)

    王慧君; 丁彦青; 徐军; 李欣; 李学锋; 杨磊; 张文丽; 耿健; 申洪; 蔡俊杰; 康伟; 吴正容; 赵菲; 钟南山

    2004-01-01

    @@ Severe acute respiratory syndrome (SARS) is an acute infectious disease which has been found to spread mainly via respiration. The first case was idnetified in Guangdong, southem China in November 2002. This disease has resulted in a severe epidemic outbreak in 27 countries and regions. In order to investigate the etiology and clinicopathologic characteristics of SARS, we reported here a patient with SARS who died of aspergillosis after prolonged treatment with corticosteroids.

  14. Use of a Phosphorylation Site Mutant To Identify Distinct Modes of Gene Repression by the Control of Virulence Regulator (CovR) in Streptococcus pyogenes.

    Science.gov (United States)

    Horstmann, Nicola; Sahasrabhojane, Pranoti; Yao, Hui; Su, Xiaoping; Shelburne, Samuel A

    2017-09-15

    Control of the virulence regulator/sensor kinase (CovRS) two-component system (TCS) serves as a model for investigating the impact of signaling pathways on the pathogenesis of Gram-positive bacteria. However, the molecular mechanisms by which CovR, an OmpR/PhoB family response regulator, controls virulence gene expression are poorly defined, partly due to the labile nature of its aspartate phosphorylation site. To better understand the regulatory effect of phosphorylated CovR, we generated the phosphorylation site mutant strain 10870-CovR-D53E, which we predicted to have a constitutive CovR phosphorylation phenotype. Interestingly, this strain showed CovR activity only for a subset of the CovR regulon, which allowed for classification of CovR-influenced genes into D53E-regulated and D53E-nonregulated groups. Inspection of the promoter sequences of genes belonging to each group revealed distinct promoter architectures with respect to the location and number of putative CovR-binding sites. Electrophoretic mobility shift analysis demonstrated that recombinant CovR-D53E protein retains its ability to bind promoter DNA from both CovR-D53E-regulated and -nonregulated groups, implying that factors other than mere DNA binding are crucial for gene regulation. In fact, we found that CovR-D53E is incapable of dimerization, a process thought to be critical to OmpR/PhoB family regulator function. Thus, our global analysis of CovR-D53E indicates dimerization-dependent and dimerization-independent modes of CovR-mediated repression, thereby establishing distinct mechanisms by which this critical regulator coordinates virulence gene expression.IMPORTANCEStreptococcus pyogenes causes a wide variety of diseases, ranging from superficial skin and throat infections to life-threatening invasive infections. To establish these various disease manifestations, Streptococcus pyogenes requires tightly coordinated production of its virulence factor repertoire. Here, the response regulator Cov

  15. Altered Lipid Metabolism in Recovered SARS Patients Twelve Years after Infection.

    Science.gov (United States)

    Wu, Qi; Zhou, Lina; Sun, Xin; Yan, Zhongfang; Hu, Chunxiu; Wu, Junping; Xu, Long; Li, Xue; Liu, Huiling; Yin, Peiyuan; Li, Kuan; Zhao, Jieyu; Li, Yanli; Wang, Xiaolin; Li, Yu; Zhang, Qiuyang; Xu, Guowang; Chen, Huaiyong

    2017-08-22

    Severe acute respiratory syndrome-coronavirus (SARS-CoV) and SARS-like coronavirus are a potential threat to global health. However, reviews of the long-term effects of clinical treatments in SARS patients are lacking. Here a total of 25 recovered SARS patients were recruited 12 years after infection. Clinical questionnaire responses and examination findings indicated that the patients had experienced various diseases, including lung susceptibility to infections, tumors, cardiovascular disorders, and abnormal glucose metabolism. As compared to healthy controls, metabolomic analyses identified significant differences in the serum metabolomes of SARS survivors. The most significant metabolic disruptions were the comprehensive increase of phosphatidylinositol and lysophospha tidylinositol levels in recovered SARS patients, which coincided with the effect of methylprednisolone administration investigated further in the steroid treated non-SARS patients with severe pneumonia. These results suggested that high-dose pulses of methylprednisolone might cause long-term systemic damage associated with serum metabolic alterations. The present study provided information for an improved understanding of coronavirus-associated pathologies, which might permit further optimization of clinical treatments.

  16. SARS-CoV regulates immune function-related gene expression in human monocytic cells.

    Science.gov (United States)

    Hu, Wanchung; Yen, Yu-Ting; Singh, Sher; Kao, Chuan-Liang; Wu-Hsieh, Betty A

    2012-08-01

    Severe acute respiratory syndrome (SARS) is characterized by acute respiratory distress syndrome (ARDS) and pulmonary fibrosis, and monocytes/macrophages are the key players in the pathogenesis of SARS. In this study, we compared the transcriptional profiles of SARS coronavirus (SARS-CoV)-infected monocytic cells against that infected by coronavirus 229E (CoV-229E). Total RNA was extracted from infected DC-SIGN-transfected monocytes (THP-1-DC-SIGN) at 6 and 24 h after infection, and the gene expression was profiled in oligonucleotide-based microarrays. Analysis of immune-related gene expression profiles showed that at 24 h after SARS-CoV infection: (1) IFN-α/β-inducible and cathepsin/proteasome genes were downregulated; (2) hypoxia/hyperoxia-related genes were upregulated; and (3) TLR/TLR-signaling, cytokine/cytokine receptor-related, chemokine/chemokine receptor-related, lysosome-related, MHC/chaperon-related, and fibrosis-related genes were differentially regulated. These results elucidate that SARS-CoV infection regulates immune-related genes in monocytes/macrophages, which may be important to the pathogenesis of SARS.

  17. Severe acute respiratory syndrome (SARS) - an emerging infection of the 21st century.

    Science.gov (United States)

    Hsueh, Po-Ren; Yang, Pan-Chyr

    2003-12-01

    Severe acute respiratory syndrome (SARS) is an emerging infection caused by a novel coronavirus known as SARS-CoV. The disease has a high propensity to spread to household members and healthcare workers and may be associated with transmission and outbreaks in the community. Severe illness in immunocompromised patients, sophisticated hospital facilities and treatment procedures, particularly those that generate aerosols, and lack of adequate isolation and control measures, can amplify transmission and contribute to so-called "super-spreading" events. The presence of non-specific clinical manifestations at presentation and a lack of validated early diagnostic methods and effective management pose great difficulty for frontline physicians in the containment of this disease. The mortality of SARS is in the region of 10 to 15%; the presence of underlying disease, high initial C-reactive protein levels, and positive SARS-CoV in nasopharyngeal aspirate samples are associated with a higher risk of respiratory failure and mortality. Despite the disappearance of SARS cases worldwide, the potential evolution of SARS-CoV in animals suggests the disease may re-emerge in the future. Heightened levels of clinical suspicion, rapid case detection and isolation, and contact tracing are essential to effective management of future outbreaks. Further ongoing requirements for successful management include research on the immunopathogenesis of SARS and the development of timely and reliable diagnostic tests, effective antiviral and immunomodulatory agents, and vaccines for the disease.

  18. The behavioral impacts of SARS and its implication for societal preparedness for other emerging infections

    Directory of Open Access Journals (Sweden)

    Kathleen Pik-san Kwok

    2008-07-01

    Full Text Available Introduction: This study examined public attitudes toward Severe Acute Respiratory Syndrome (SARS in Hong Kong three months after the peak of the 2003 outbreak in order to shed light on SARS-related complaints received by the Equal Opportunities Commission of Hong Kong. Methods: A cross-sectional telephone survey was conducted three months after the SARS outbreak of 1,023 randomly selected Chinese-speaking residents in Hong Kong. Results: Most of the respondents (72.2% reported worry about contracting SARS. They attributed their anxiety to the perceived danger of the disease, the government’s unsatisfactory style of crisis management, and inconsistent health information dissemination. The majority of respondents endorsed up to 3 avoidant (67.8% and 3 imposing (72.7% attitudes toward individuals and/or situations considered to be at risk of spreading SARS. Logistic Regression analyses indicated that the odds for avoidant and imposing attitudes increased significantly for those who were middle aged (35-54, employed full-time or part-time, and worried over contracting SARS. Conclusions: Public attitudes that endorsed avoidant and imposing behaviors were common during the outbreak of SARS. While essential for preventive health practices, they might bring about workplace conflicts, stigma, and other negative interpersonal experiences. These problems may complicate public health efforts to control the epidemic. They may also suggest ways in which societal preparedness for future emerging infections can be improved.

  19. Spatial Distribution of Infection Risk of SARS Transmission in a Hospital Ward

    DEFF Research Database (Denmark)

    Qian, Hua; Li, Yuguo; Nielsen, Peter V.;

    2009-01-01

    diseases by integrating the Wells-Riley equation into computational fluid dynamics. We applied our new integrated model to analyze a large nosocomial SARS outbreak in Hong Kong during the 2003 SARS epidemics, which was studied in the literature with regard to the association between airflow and SARS......The classical Wells-Riley model for predicting risk of airborne transmission of diseases assumes a uniform spatial distribution of the infected cases in an enclosed space. A new mathematical model is developed here for predicting the spatial distribution of infection risk of airborne transmitted...... inpatients during the entire infection period. The new developed model provides a new modelling tool for investigating the airborne transmission of diseases in enclosed spaces. The model is applicable when the susceptible stays mostly at the same location in an enclosed space during the infectious period...

  20. SARS CORONAVIRUS ENRICHED IN LYMPHOCYTES:AN EARLY DETECTION OF SARS%检测淋巴细胞内的冠状病毒RNA可作为SARS的早期诊断指标

    Institute of Scientific and Technical Information of China (English)

    王海滨; 毛远丽; 鞠连才

    2004-01-01

    Because of the highly contagious nature of the SARS-Coronavirus (CoV),a rapid and reliable diagnostic test is urgently needed for making a definite diagnosis at early phase so that infected individuals can be isolated while avoiding blanket quarantines and the unnecessary burden on the medical care system.Unfortanantly,current kits/procedures had only less than 20 % positive detecting rate with serum or other samples of real SARS patients.Due to the compositions varies with times and individuals,the septum and lung lavage are impossible to serve as a standardized sample source for the comparison or monitoring of viral load.Therefore,the currently available kits/procedures should be improved and a good sample source should be identified.[Methods] Viral RNA in two hundred microlitter plasma or one million lymphocytes from SARS patients were extracted with Trizol,and then entire RNA was used as a template in a modified procedure of RT-PCR.CoV viral load was quantified in 45 patients at different phases of SARS infection and compared between the paired samples of plasma and lymphocytes obtained from 5 patients who had recovered from SARS for 2 months and lived in a normal life.[Results] Our methods detected CoV at a level of a few copies with 60-80% positive detection rate for plasma from SARS patients within 1 to 7 days after fever,which was much more sensitive than other current available method(positive rate at 8%~20%).The mean viral copies in 17 acute phase patients(1 to 7 days after fever)was 8,951,while that in 18 sub-acute phase patients(13 to 36 days after fever)was 98 and that in 10 recovered patients(79 to 91 days after fever)was 88.Importantly,the levels of CoV in lymphocytes of 5 patients who had recovered from SARS for 2 months were 2 to 3 orders of magnitude higher than that in the plasma.[Conclusions] The early and definite diagnosis of SARS can be achieved by our modified RT-PCR.CoV load peaked during the acute phase and rapidly dropped in sub

  1. An immunosuppressed Syrian golden hamster model for SARS-CoV infection.

    Science.gov (United States)

    Schaecher, Scott R; Stabenow, Jennifer; Oberle, Christina; Schriewer, Jill; Buller, R Mark; Sagartz, John E; Pekosz, Andrew

    2008-10-25

    Several small animal models have been developed for the study of severe acute respiratory syndrome coronavirus (SARS-CoV) replication and pathogenesis. Syrian golden hamsters are among the best small animal models, though little clinical illness and no mortality are observed after virus infection. Cyclophosphamide was used to immunosuppress hamsters leading to a prolonged disease course and higher mortality after SARS-CoV infection. In addition, there was a significant weight loss, expanded tissue tropism, and increased viral pathology in the lung, heart, kidney, and nasal turbinate tissues. Infection with recombinant SARS-CoV viruses bearing disruptions in the gene 7 coding region showed no significant change in replication kinetics, tissue tropism, morbidity, or mortality suggesting that the ORF7a (7a) and ORF7b (7b) proteins are not required for virus replication in immunosuppressed hamsters. This modified hamster model may provide a useful tool for SARS-CoV pathogenesis studies, evaluation of antiviral therapy, and analysis of additional SARS-CoV mutants.

  2. An Outbreak of SARS in a Diabetes Room of a General Hospital without Infected Medical Staff

    Institute of Scientific and Technical Information of China (English)

    2013-01-01

    Objective To investigate the epidemiologic features of an outbreak of SARS that occurred in a single diabetes room of a general hospital in Beijing in late March 2003. Methods Field investigation was carried out in the ward, the nursing log and the hospitalization medical record of correlative patients were consulted. SARS-CoV in serum specimen from SARS patient was detected by PCR. Results The room where SARS outbreak occurred was on the 13th lfoor of the 16-story main ward building. There were 6 beds in the room, living with 6 female patients (aged 45-67) who were all hospitalized due to type 2 diabetes. On March 24, 2003, Patient 1 began to have a fever and cough, chest X-ray showed pneumonia. Five and six days later, Patient 2 and Patient 3 began to have a fever, respectively. Finally, all of these 3 patients died. Their beds were all at the same side of the room, and the other 3 patients at the opposite side were not infected. Serum SARS CoV-RNA of the Patient 3 was positive by nest-PCR. The daughter-in-law of Patient 1 who accompanied Patient 1 by the bedside several days, mainly near the window, upwind of Patient 1, was not infected. Medical staff, family members and visitors of the 6 patients were not infected. Conclusions This outbreak was not transmitted by aerosol. The distance droplets travels could be up to 3.43 meters. Droplet spread has direction, and the droplets direction of propagation is closely related with the wind direction and speed. Those at the downwind position of SARS patients were susceptible to be infected. Medical staff wore face masks and good natural ventilation of this ward building may be important reasons for the prevention of infection.

  3. The replication of a mouse adapted SARS-CoV in a mouse cell line stably expressing the murine SARS-CoV receptor mACE2 efficiently induces the expression of proinflammatory cytokines.

    Science.gov (United States)

    Regla-Nava, Jose A; Jimenez-Guardeño, Jose M; Nieto-Torres, Jose L; Gallagher, Thomas M; Enjuanes, Luis; DeDiego, Marta L

    2013-11-01

    Infection of conventional mice with a mouse adapted (MA15) severe acute respiratory syndrome (SARS) coronavirus (CoV) reproduces many aspects of human SARS such as pathological changes in lung, viremia, neutrophilia, and lethality. However, established mouse cell lines highly susceptible to mouse-adapted SARS-CoV infection are not available. In this work, efficiently transfectable mouse cell lines stably expressing the murine SARS-CoV receptor angiotensin converting enzyme 2 (ACE2) have been generated. These cells yielded high SARS-CoV-MA15 titers and also served as excellent tools for plaque assays. In addition, in these cell lines, SARS-CoV-MA15 induced the expression of proinflammatory cytokines and IFN-β, mimicking what has been observed in experimental animal models infected with SARS-CoV and SARS patients. These cell lines are valuable tools to perform in vitro studies in a mouse cell system that reflects the species used for in vivo studies of SARS-CoV-MA15 pathogenesis. Copyright © 2013 Elsevier B.V. All rights reserved.

  4. Complement-mediated opsonization of invasive group A Streptococcus pyogenes strain AP53 is regulated by the bacterial two-component cluster of virulence responder/sensor (CovRS) system.

    Science.gov (United States)

    Agrahari, Garima; Liang, Zhong; Mayfield, Jeffrey A; Balsara, Rashna D; Ploplis, Victoria A; Castellino, Francis J

    2013-09-20

    Group A Streptococcus pyogenes (GAS) strain AP53 is a primary isolate from a patient with necrotizing fasciitis. These AP53 cells contain an inactivating mutation in the sensor component of the cluster of virulence (cov) responder (R)/sensor (S) two-component gene regulatory system (covRS), which enhances the virulence of the primary strain, AP53/covR(+)S(-). However, specific mechanisms by which the covRS system regulates the survival of GAS in humans are incomplete. Here, we show a key role for covRS in the regulation of opsonophagocytosis of AP53 by human neutrophils. AP53/covR(+)S(-) cells displayed potent binding of host complement inhibitors of C3 convertase, viz. Factor H (FH) and C4-binding protein (C4BP), which concomitantly led to minimal C3b deposition on AP53 cells, further showing that these plasma protein inhibitors are active on GAS cells. This resulted in weak killing of the bacteria by human neutrophils and a corresponding high death rate of mice after injection of these cells. After targeted allelic alteration of covS(-) to wild-type covS (covS(+)), a dramatic loss of FH and C4BP binding to the AP53/covR(+)S(+) cells was observed. This resulted in elevated C3b deposition on AP53/covR(+)S(+) cells, a high level of opsonophagocytosis by human neutrophils, and a very low death rate of mice infected with AP53/covR(+)S(+). We show that covRS is a critical transcriptional regulator of genes directing AP53 killing by neutrophils and regulates the levels of the receptors for FH and C4BP, which we identify as the products of the fba and enn genes, respectively.

  5. MicroRNome analysis unravels the molecular basis of SARS infection in bronchoalveolar stem cells.

    Directory of Open Access Journals (Sweden)

    Bibekanand Mallick

    Full Text Available Severe acute respiratory syndrome (SARS, caused by the coronavirus SARS-CoV, is an acute infectious disease with significant mortality. A typical clinical feature associated with SARS is pulmonary fibrosis and associated lung failure. In the aftermath of the SARS epidemic, although significant progress towards understanding the underlying molecular mechanism of the infection has been made, a large gap still remains in our knowledge regarding how SARS-CoV interacts with the host cell at the onset of infection. The rapidly changing viral genome adds another variable to this equation. We have focused on a novel concept of microRNA (miRNA-mediated host-virus interactions in bronchoalveolar stem cells (BASCs at the onset of infection by correlating the "BASC-microRNome" with their targets within BASCs and viral genome. This work encompasses miRNA array data analysis, target prediction, and miRNA-mRNA enrichment analysis and develops a complex interaction map among disease-related factors, miRNAs, and BASCs in SARS pathway, which will provide some clues for diagnostic markers to view an overall interplay leading to disease progression. Our observation reveals the BASCs (Sca-1+ CD34+ CD45- Pecam-, a subset of Oct-4+ ACE2+ epithelial colony cells at the broncho-alveolar duct junction, to be the prime target cells of SARS-CoV infection. Upregulated BASC miRNAs-17*, -574-5p, and -214 are co-opted by SARS-CoV to suppress its own replication and evade immune elimination until successful transmission takes place. Viral Nucleocapsid and Spike protein targets seem to co-opt downregulated miR-223 and miR-98 respectively within BASCs to control the various stages of BASC differentiation, activation of inflammatory chemokines, and downregulation of ACE2. All these effectively accounts for a successful viral transmission and replication within BASCs causing continued deterioration of lung tissues and apparent loss of capacity for lung repair. Overall, this

  6. Alisporivir inhibits MERS- and SARS-coronavirus replication in cell culture, but not SARS-coronavirus infection in a mouse model.

    Science.gov (United States)

    de Wilde, Adriaan H; Falzarano, Darryl; Zevenhoven-Dobbe, Jessika C; Beugeling, Corrine; Fett, Craig; Martellaro, Cynthia; Posthuma, Clara C; Feldmann, Heinz; Perlman, Stanley; Snijder, Eric J

    2017-01-15

    Currently, there is no registered treatment for infections with emerging zoonotic coronaviruses like SARS- and MERS-coronavirus. We here report that in cultured cells low-micromolar concentrations of alisporivir, a non-immunosuppressive cyclosporin A-analog, inhibit the replication of four different coronaviruses, including MERS- and SARS-coronavirus. Ribavirin was found to further potentiate the antiviral effect of alisporivir in these cell culture-based infection models, but this combination treatment was unable to improve the outcome of SARS-CoV infection in a mouse model. Nevertheless, our data provide a basis to further explore the potential of Cyp inhibitors as host-directed, broad-spectrum inhibitors of coronavirus replication.

  7. Serotype- and strain- dependent contribution of the sensor kinase CovS of the CovRS two-component system to Streptococcus pyogenes pathogenesis

    Directory of Open Access Journals (Sweden)

    Podbielski Andreas

    2010-02-01

    Full Text Available Abstract Background The Streptococcus pyogenes (group A streptococci, GAS two-component signal transduction system CovRS has been described to be important for pathogenesis of this exclusively human bacterial species. If this system acts uniquely in all serotypes is currently unclear. Presence of serotype- or strain-dependent regulatory circuits and polarity is an emerging scheme in Streptococcus pyogenes pathogenesis. Thus, the contribution of the sensor kinase (CovS of the global regulatory two-component signal transduction system CovRS on pathogenesis of several M serotypes was investigated. Results CovS mutation uniformly repressed capsule expression and hampered keratinocyte adherence in all tested serotypes. However, a serotype- and even strain-dependent contribution on survival in whole human blood and biofilm formation was noted, respectively. Conclusions These data provide new information on the action of the CovS sensor kinase and revealed that its activity on capsule expression and keratinocyte adherence is uniform across serotypes, whereas the influence on biofilm formation and blood survival is serotype or even strain dependent. This adds the CovRS system to a growing list of serotype-specific acting regulatory loci in S. pyogenes.

  8. Functional genomics highlights differential induction of antiviral pathways in the lungs of SARS-CoV-infected macaques.

    NARCIS (Netherlands)

    A. de Lang (Anna); T. Baas (Tracey); T.H. Teal (Thomas); L.M.E. Leijten (Lonneke); B. Rain (Brandon); A.D.M.E. Osterhaus (Albert); B.L. Haagmans (Bart); M.G. Katze (Michael)

    2007-01-01

    textabstractThe pathogenesis of severe acute respiratory syndrome coronavirus (SARS-CoV) is likely mediated by disproportional immune responses and the ability of the virus to circumvent innate immunity. Using functional genomics, we analyzed early host responses to SARS-CoV infection in the lungs o

  9. Immunodominant SARS Coronavirus Epitopes in Humans Elicited both Enhancing and Neutralizing Effects on Infection in Non-human Primates.

    Science.gov (United States)

    Wang, Qidi; Zhang, Lianfeng; Kuwahara, Kazuhiko; Li, Li; Liu, Zijie; Li, Taisheng; Zhu, Hua; Liu, Jiangning; Xu, Yanfeng; Xie, Jing; Morioka, Hiroshi; Sakaguchi, Nobuo; Qin, Chuan; Liu, Gang

    2016-05-13

    Severe acute respiratory syndrome (SARS) is caused by a coronavirus (SARS-CoV) and has the potential to threaten global public health and socioeconomic stability. Evidence of antibody-dependent enhancement (ADE) of SARS-CoV infection in vitro and in non-human primates clouds the prospects for a safe vaccine. Using antibodies from SARS patients, we identified and characterized SARS-CoV B-cell peptide epitopes with disparate functions. In rhesus macaques, the spike glycoprotein peptides S471-503, S604-625, and S1164-1191 elicited antibodies that efficiently prevented infection in non-human primates. In contrast, peptide S597-603 induced antibodies that enhanced infection both in vitro and in non-human primates by using an epitope sequence-dependent (ESD) mechanism. This peptide exhibited a high level of serological reactivity (64%), which resulted from the additive responses of two tandem epitopes (S597-603 and S604-625) and a long-term human B-cell memory response with antisera from convalescent SARS patients. Thus, peptide-based vaccines against SARS-CoV could be engineered to avoid ADE via elimination of the S597-603 epitope. We provide herein an alternative strategy to prepare a safe and effective vaccine for ADE of viral infection by identifying and eliminating epitope sequence-dependent enhancement of viral infection.

  10. Identification of a novel conserved HLA-A*0201-restricted epitope from the spike protein of SARS-CoV

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    Ni Bing

    2009-12-01

    Full Text Available Abstract Background The spike (S protein is a major structural glycoprotein of coronavirus (CoV, the causal agent of severe acute respiratory syndrome (SARS. The S protein is a potent target for SARS-specific cell-mediated immune responses. However, the mechanism CoV pathogenesis in SARS and the role of special CTLs in virus clearance are still largely uncharacterized. Here, we describe a study that leads to the identification of a novel HLA-A*0201-restricted epitope from conserved regions of S protein. Results First, different SARS-CoV sequences were analyzed to predict eight candidate peptides from conserved regions of the S protein based upon HLA-A*0201 binding and proteosomal cleavage. Four of eight candidate peptides were tested by HLA-A*0201 binding assays. Among the four candidate peptides, Sp8 (S958-966, VLNDILSRL induced specific CTLs both ex vivo in PBLs of healthy HLA-A2+ donors and in HLA-A2.1/Kb transgenic mice immunized with a plasmid encoding full-length S protein. The immunized mice released IFN-γ and lysed target cells upon stimulation with Sp8 peptide-pulsed autologous dendritic cells in comparison to other candidates. Conclusion These results suggest that Sp8 is a naturally processed epitope. We propose that Sp8 epitope should help in the characterization of mechanisms of virus control and immunopathology in SARS-CoV infection.

  11. Spatial distribution of infection risk of SARS transmission in a hospital ward

    Energy Technology Data Exchange (ETDEWEB)

    Qian, Hua; Li, Yuguo [School of Energy and Environment, Southeast University, Nanjing, JiangSu (China); Nielsen, Peter V. [Department of Civil Engineering, Aalborg University, DK-9000 Aalborg (Denmark); Huang, Xinhua [Institute of Refrigeration and Cryogenics Engineering, Shanghai Jiaotong University, Shanghai (China)

    2009-08-15

    The classical Wells-Riley model for predicting risk of airborne transmission of diseases assumes a uniform spatial distribution of the infected cases in an enclosed space. A new mathematical model is developed here for predicting the spatial distribution of infection risk of airborne transmitted diseases by integrating the Wells-Riley equation into computational fluid dynamics. We applied our new integrated model to analyze a large nosocomial SARS outbreak in Hong Kong during the 2003 SARS epidemics, which was studied in the literature with regard to the association between airflow and SARS infection. The predicted numbers of infected cases of medical students in the same cubicle, the adjacent cubicle and the distant cubicle were 6.39, 0.78 and 0.2 respectively while the observed numbers of infected medical students in the three cubicles were 7, 0 and 0 respectively during the morning of March 6th, which was the highest attack period. The predicted numbers of infected cases of inpatients during the morning of March 6th in the same cubicle, the adjacent cubic and the distance cubicle were 7.8, 5.1, and 4.8 respectively which also agree well with the observed distribution of the infected inpatients during the entire infection period. The new developed model provides a new modelling tool for investigating the airborne transmission of diseases in enclosed spaces. The model is applicable when the susceptible stays mostly at the same location in an enclosed space during the infectious period, such as inpatients in a hospital ward, passengers in an airplane etc. (author)

  12. Srv mediated dispersal of streptococcal biofilms through SpeB is observed in CovRS+ strains.

    Directory of Open Access Journals (Sweden)

    Kristie L Connolly

    Full Text Available Group A Streptococcus (GAS is a human specific pathogen capable of causing both mild infections and severe invasive disease. We and others have shown that GAS is able to form biofilms during infection. That is to say, they form a three-dimensional, surface attached structure consisting of bacteria and a multi-component extracellular matrix. The mechanisms involved in regulation and dispersal of these GAS structures are still unclear. Recently we have reported that in the absence of the transcriptional regulator Srv in the MGAS5005 background, the cysteine protease SpeB is constitutively produced, leading to increased tissue damage and decreased biofilm formation during a subcutaneous infection in a mouse model. This was interesting because MGAS5005 has a naturally occurring mutation that inactivates the sensor kinase domain of the two component regulatory system CovRS. Others have previously shown that strains lacking covS are associated with decreased SpeB production due to CovR repression of speB expression. Thus, our results suggest the inactivation of srv can bypass CovR repression and lead to constitutive SpeB production. We hypothesized that Srv control of SpeB production may be a mechanism to regulate biofilm dispersal and provide a mechanism by which mild infection can transition to severe disease through biofilm dispersal. The question remained however, is this mechanism conserved among GAS strains or restricted to the unique genetic makeup of MGAS5005. Here we show that Srv mediated control of SpeB and biofilm dispersal is conserved in the invasive clinical isolates RGAS053 (serotype M1 and MGAS315 (serotype M3, both of which have covS intact. This work provides additional evidence that Srv regulated control of SpeB may mediate biofilm formation and dispersal in diverse strain backgrounds.

  13. A Real-Time PCR Assay for Bat SARS-Like Coronavirus Detection and Its Application to Italian Greater Horseshoe Bat Faecal Sample Surveys

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    Andrea Balboni

    2012-01-01

    Full Text Available Bats are source of coronaviruses closely related to the severe acute respiratory syndrome (SARS virus. Numerous studies have been carried out to identify new bat viruses related to SARS-coronavirus (bat-SARS-like CoVs using a reverse-transcribed-polymerase chain reaction assay. However, a qualitative PCR could underestimate the prevalence of infection, affecting the epidemiological evaluation of bats in viral ecology. In this work an SYBR Green-real time PCR assay was developed for diagnosing infection with SARS-related coronaviruses from bat guano and was applied as screening tool in a survey carried out on 45 greater horseshoe bats (Rhinolophus ferrumequinum sampled in Italy in 2009. The assay showed high sensitivity and reproducibility. Its application on bats screening resulted in a prevalence of 42%. This method could be suitable as screening tool in epidemiological surveys about the presence of bat-SARS-like CoVs, consequently to obtain a more realistic scenario of the viral prevalence in the population.

  14. Inhibition of cytokine gene expression and induction of chemokine genes in non-lymphatic cells infected with SARS coronavirus

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    Weber Friedemann

    2006-03-01

    Full Text Available Abstract Background SARS coronavirus (SARS-CoV is the etiologic agent of the severe acute respiratory syndrome. SARS-CoV mainly infects tissues of non-lymphatic origin, and the cytokine profile of those cells can determine the course of disease. Here, we investigated the cytokine response of two human non-lymphatic cell lines, Caco-2 and HEK 293, which are fully permissive for SARS-CoV. Results A comparison with established cytokine-inducing viruses revealed that SARS-CoV only weakly triggered a cytokine response. In particular, SARS-CoV did not activate significant transcription of the interferons IFN-α, IFN-β, IFN-λ1, IFN-λ2/3, as well as of the interferon-induced antiviral genes ISG56 and MxA, the chemokine RANTES and the interleukine IL-6. Interestingly, however, SARS-CoV strongly induced the chemokines IP-10 and IL-8 in the colon carcinoma cell line Caco-2, but not in the embryonic kidney cell line 293. Conclusion Our data indicate that SARS-CoV suppresses the antiviral cytokine system of non-immune cells to a large extent, thus buying time for dissemination in the host. However, synthesis of IP-10 and IL-8, which are established markers for acute-stage SARS, escapes the virus-induced silencing at least in some cell types. Therefore, the progressive infiltration of immune cells into the infected lungs observed in SARS patients could be due to the production of these chemokines by the infected tissue cells.

  15. A natural inactivating mutation in the CovS component of the CovRS regulatory operon in a pattern D Streptococcal pyogenes strain influences virulence-associated genes.

    Science.gov (United States)

    Liang, Zhong; Zhang, Yueling; Agrahari, Garima; Chandrahas, Vishwanatha; Glinton, Kristofor; Donahue, Deborah L; Balsara, Rashna D; Ploplis, Victoria A; Castellino, Francis J

    2013-03-01

    A skin-tropic invasive group A Streptococcus pyogenes (GAS) strain, AP53, contains a natural inactivating mutation in the covS gene (covS(M)) of the two-component responder (CovR)/sensor (CovS) gene regulatory system. The effects of this mutation on specific GAS virulence determinants have been assessed, with emphasis on expression of the extracellular protease, streptococcal pyrogenic exotoxin B (SpeB), capsular hyaluronic acid, and proteins that allow host plasmin assembly on the bacterial surface, viz. a high affinity plasminogen (Pg)/plasmin receptor, Pg-binding group A streptococcal M protein (PAM), and the human Pg activator streptokinase. To further illuminate mechanisms of the functioning of CovRS in the virulence of AP53, two AP53 isogenic strains were generated, one in which the natural covS(M) gene was mutated to WT-covS (AP53/covS(WT)) and a strain that contained an inactivated covR gene (AP53/ΔcovR). Two additional strains that do not contain PAM, viz. WT-NS931 and NS931/covS(M), were also employed. SpeB was not measurably expressed in strains containing covR(WT)/covS(M), whereas in strains with natural or engineered covR(WT)/covS(WT), SpeB expression was highly up-regulated. Alternatively, capsule synthesis via the hasABC operon was enhanced in strain AP53/covS(M), whereas streptokinase expression was only slightly affected by the covS inactivation. PAM expression was not substantially influenced by the covS mutation, suggesting that covRS had minimal effects on the mga regulon that controls PAM expression. These results demonstrate that a covS inactivation results in virulence gene alterations and also suggest that the CovR phosphorylation needed for gene up- or down-regulation can occur by alternative pathways to CovS kinase.

  16. METAPNEUMOVIRUS AND BOKAVIRUS RESPIRATORY INFECTIONS IN THE STRUCTURE OF SARS IN CHILDREN

    Directory of Open Access Journals (Sweden)

    F. S. Harlamov

    2015-01-01

    Full Text Available The article provides an overview of the literature data about new pneumotropic viruses - metapneumovirus and bokavirus: taxonomy, structural features, pathogenesis, laboratory diagnosis, clinical symptoms of the diseases they cause and complications. The high incidence and bokavirus metapnevmovirus structure of SARS infections in preschool children, the authors have shown the example carried out at the Department of Infectious Diseases in Children Medical University (now RNIMU named after N.I. Pirogov and on the basis of clinical Institute of Virology, multicenter, randomized, blind, placebo-controlled study on the therapeutic efficacy and safety of interferon inducer Kagocel in 120 children aged 2 to 6 years. The findings to point out on significant reduction in the rate of relief of basic clinical manifestations of SARS, regardless of etiology, in children taking Kagocel in compare with a group of children who took a placebo.

  17. Network-based analysis of comorbidities risk during an infection: SARS and HIV case studies.

    Science.gov (United States)

    Moni, Mohammad Ali; Liò, Pietro

    2014-10-24

    Infections are often associated to comorbidity that increases the risk of medical conditions which can lead to further morbidity and mortality. SARS is a threat which is similar to MERS virus, but the comorbidity is the key aspect to underline their different impacts. One UK doctor says "I'd rather have HIV than diabetes" as life expectancy among diabetes patients is lower than that of HIV. However, HIV has a comorbidity impact on the diabetes. We present a quantitative framework to compare and explore comorbidity between diseases. By using neighbourhood based benchmark and topological methods, we have built comorbidity relationships network based on the OMIM and our identified significant genes. Then based on the gene expression, PPI and signalling pathways data, we investigate the comorbidity association of these 2 infective pathologies with other 7 diseases (heart failure, kidney disorder, breast cancer, neurodegenerative disorders, bone diseases, Type 1 and Type 2 diabetes). Phenotypic association is measured by calculating both the Relative Risk as the quantified measures of comorbidity tendency of two disease pairs and the ϕ-correlation to measure the robustness of the comorbidity associations. The differential gene expression profiling strongly suggests that the response of SARS affected patients seems to be mainly an innate inflammatory response and statistically dysregulates a large number of genes, pathways and PPIs subnetworks in different pathologies such as chronic heart failure (21 genes), breast cancer (16 genes) and bone diseases (11 genes). HIV-1 induces comorbidities relationship with many other diseases, particularly strong correlation with the neurological, cancer, metabolic and immunological diseases. Similar comorbidities risk is observed from the clinical information. Moreover, SARS and HIV infections dysregulate 4 genes (ANXA3, GNS, HIST1H1C, RASA3) and 3 genes (HBA1, TFRC, GHITM) respectively that affect the ageing process. It is notable

  18. Differential sensitivity of bat cells to infection by enveloped RNA viruses: coronaviruses, paramyxoviruses, filoviruses, and influenza viruses.

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    Markus Hoffmann

    Full Text Available Bats (Chiroptera host major human pathogenic viruses including corona-, paramyxo, rhabdo- and filoviruses. We analyzed six different cell lines from either Yinpterochiroptera (including African flying foxes and a rhinolophid bat or Yangochiroptera (genera Carollia and Tadarida for susceptibility to infection by different enveloped RNA viruses. None of the cells were sensitive to infection by transmissible gastroenteritis virus (TGEV, a porcine coronavirus, or to infection mediated by the Spike (S protein of SARS-coronavirus (SARS-CoV incorporated into pseudotypes based on vesicular stomatitis virus (VSV. The resistance to infection was overcome if cells were transfected to express the respective cellular receptor, porcine aminopeptidase N for TGEV or angiotensin-converting enzyme 2 for SARS-CoV. VSV pseudotypes containing the S proteins of two bat SARS-related CoV (Bg08 and Rp3 were unable to infect any of the six tested bat cell lines. By contrast, viral pseudotypes containing the surface protein GP of Marburg virus from the family Filoviridae infected all six cell lines though at different efficiency. Notably, all cells were sensitive to infection by two paramyxoviruses (Sendai virus and bovine respiratory syncytial virus and three influenza viruses from different subtypes. These results indicate that bat cells are more resistant to infection by coronaviruses than to infection by paramyxoviruses, filoviruses and influenza viruses. Furthermore, these results show a receptor-dependent restriction of the infection of bat cells by CoV. The implications for the isolation of coronaviruses from bats are discussed.

  19. Ezrin interacts with the SARS coronavirus Spike protein and restrains infection at the entry stage.

    Directory of Open Access Journals (Sweden)

    Jean Kaoru Millet

    Full Text Available BACKGROUND: Entry of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV and its envelope fusion with host cell membrane are controlled by a series of complex molecular mechanisms, largely dependent on the viral envelope glycoprotein Spike (S. There are still many unknowns on the implication of cellular factors that regulate the entry process. METHODOLOGY/PRINCIPAL FINDINGS: We performed a yeast two-hybrid screen using as bait the carboxy-terminal endodomain of S, which faces the cytosol during and after opening of the fusion pore at early stages of the virus life cycle. Here we show that the ezrin membrane-actin linker interacts with S endodomain through the F1 lobe of its FERM domain and that both the eight carboxy-terminal amino-acids and a membrane-proximal cysteine cluster of S endodomain are important for this interaction in vitro. Interestingly, we found that ezrin is present at the site of entry of S-pseudotyped lentiviral particles in Vero E6 cells. Targeting ezrin function by small interfering RNA increased S-mediated entry of pseudotyped particles in epithelial cells. Furthermore, deletion of the eight carboxy-terminal amino acids of S enhanced S-pseudotyped particles infection. Expression of the ezrin dominant negative FERM domain enhanced cell susceptibility to infection by SARS-CoV and S-pseudotyped particles and potentiated S-dependent membrane fusion. CONCLUSIONS/SIGNIFICANCE: Ezrin interacts with SARS-CoV S endodomain and limits virus entry and fusion. Our data present a novel mechanism involving a cellular factor in the regulation of S-dependent early events of infection.

  20. Ezrin Interacts with the SARS Coronavirus Spike Protein and Restrains Infection at the Entry Stage

    Science.gov (United States)

    Millet, Jean Kaoru; Kien, François; Cheung, Chung-Yan; Siu, Yu-Lam; Chan, Wing-Lim; Li, Huiying; Leung, Hiu-Lan; Jaume, Martial; Bruzzone, Roberto; Malik Peiris, Joseph S.; Altmeyer, Ralf Marius; Nal, Béatrice

    2012-01-01

    Background Entry of Severe Acute Respiratory Syndrome coronavirus (SARS-CoV) and its envelope fusion with host cell membrane are controlled by a series of complex molecular mechanisms, largely dependent on the viral envelope glycoprotein Spike (S). There are still many unknowns on the implication of cellular factors that regulate the entry process. Methodology/Principal Findings We performed a yeast two-hybrid screen using as bait the carboxy-terminal endodomain of S, which faces the cytosol during and after opening of the fusion pore at early stages of the virus life cycle. Here we show that the ezrin membrane-actin linker interacts with S endodomain through the F1 lobe of its FERM domain and that both the eight carboxy-terminal amino-acids and a membrane-proximal cysteine cluster of S endodomain are important for this interaction in vitro. Interestingly, we found that ezrin is present at the site of entry of S-pseudotyped lentiviral particles in Vero E6 cells. Targeting ezrin function by small interfering RNA increased S-mediated entry of pseudotyped particles in epithelial cells. Furthermore, deletion of the eight carboxy-terminal amino acids of S enhanced S-pseudotyped particles infection. Expression of the ezrin dominant negative FERM domain enhanced cell susceptibility to infection by SARS-CoV and S-pseudotyped particles and potentiated S-dependent membrane fusion. Conclusions/Significance Ezrin interacts with SARS-CoV S endodomain and limits virus entry and fusion. Our data present a novel mechanism involving a cellular factor in the regulation of S-dependent early events of infection. PMID:23185364

  1. Synthesis and evaluation of phenylisoserine derivatives for the SARS-CoV 3CL protease inhibitor.

    Science.gov (United States)

    Konno, Hiroyuki; Onuma, Takumi; Nitanai, Ikumi; Wakabayashi, Masaki; Yano, Shigekazu; Teruya, Kenta; Akaji, Kenichi

    2017-06-15

    Synthesis and evaluation of new scaffold phenylisoserine derivatives connected with the essential functional groups against SARS CoV 3CL protease are described. The phenylisoserine backbone was found by simulation on GOLD software and the structure activity relationship study of phenylisoserine derivatives gave SK80 with an IC50 value of 43μM against SARS CoV 3CL R188I mutant protease. Copyright © 2017 Elsevier Ltd. All rights reserved.

  2. Functional genomics highlights differential induction of antiviral pathways in the lungs of SARS-CoV-infected macaques.

    Directory of Open Access Journals (Sweden)

    Anna de Lang

    2007-08-01

    Full Text Available The pathogenesis of severe acute respiratory syndrome coronavirus (SARS-CoV is likely mediated by disproportional immune responses and the ability of the virus to circumvent innate immunity. Using functional genomics, we analyzed early host responses to SARS-CoV infection in the lungs of adolescent cynomolgus macaques (Macaca fascicularis that show lung pathology similar to that observed in human adults with SARS. Analysis of gene signatures revealed induction of a strong innate immune response characterized by the stimulation of various cytokine and chemokine genes, including interleukin (IL-6, IL-8, and IP-10, which corresponds to the host response seen in acute respiratory distress syndrome. As opposed to many in vitro experiments, SARS-CoV induced a wide range of type I interferons (IFNs and nuclear translocation of phosphorylated signal transducer and activator of transcription 1 in the lungs of macaques. Using immunohistochemistry, we revealed that these antiviral signaling pathways were differentially regulated in distinctive subsets of cells. Our studies emphasize that the induction of early IFN signaling may be critical to confer protection against SARS-CoV infection and highlight the strength of combining functional genomics with immunohistochemistry to further unravel the pathogenesis of SARS.

  3. Study on the roles of HLA-A gene polymorphism in the susceptibility and symptom of SARS-Coronavirus infection%HLA-A基因多态性与SARS易感性及症状关系的研究

    Institute of Scientific and Technical Information of China (English)

    何丽; 魏茂提; 王世鑫; 胡役兰

    2011-01-01

    Objective:To study the association between HLA-A gene polym orphsm and the susceptibility and symptom of SARS-Coroavirus infection in Northern Chinese Han ethnics.Methods:HLA-A were typed in 53 SARS cases,44 high risks and 77 controls using PCR-SBT m ethods in two case-control studies.Data were analyzed using SPSS version 11.5 and chisquares and OR were used to show the differences and association .Results:The frequency of HLA-A * 2453 allele in SARS patients was markedly higher than that of the high risk care workers(P=0.039,0R=4.479,95%CI 0.95-21.015).How ever,the frequency of HLA-A * 2444 allele in SARS patients was lower than that of the health control( P=0.029 ) .There was no significant difference of the distribution of HLA-A allele frequency in mild cases and severe cases.Conclusion :Genotype of HLA-A * 2453 may be one risk factor for infection of SARS-Cov ,how ever,HLA-A * 2444 may be protect factor for it infection .The severity of SARS may not relate with the genotype of HLA-A.%目的:研究中国北方汉族人群HLA-A基因多态性与SARS-Cov易感性及症状的关系.方法:采用病例-对照研究设计,应用PCR-SBT的研究方法对53例SARS患者、44例高危人群和77例健康人员的HLA-A位点等位基因型分布进行研究,运用SPSS11.5软件包进行统计分析,组间比较采用χ2检验,计算比值比(OR)及其95%可信区间(95%CI).结果:与高危人群比较,SARS病人 HLA-A*2453(P=0.039,OR=4.479,95%CI 0.955~21.015)基因型出现频率较高,两者有统计学意义;与健康人群比较,SARS病人HLA-A*2444(P=0.029)基因型频率显著减低;SARS患者轻症组和重症组的HLA-A位点的等位基因频率分布相比较未发现统计学差异(P>0.05).结论:我国华北地区汉族人群中HLA-A*2453可能与SARS的易感性相关,而等位基因HLA-A*2444可能具有保护作用.HLA-A基因多态性与SARS患者病情严重程度可能无关.

  4. Molecular phylogeny of coronaviruses including human SARS-CoV

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    Phylogenetic tree of coronaviruses (CoVs) including the human SARS-associated virus is reconstructed from complete genomes by using our newly developed K- string composition approach. The relation of the human SARS-CoV to other coronaviruses, i.e. the rooting of the tree is suggested by choosing an appropriate outgroup. SARS-CoV makes a separate group closer but still distant from G2 (CoVs in mammalian host). The relation between different isolates of the human SARS virus is inferred by first constructing an ultrametric distance matrix from counting sequence variations in the genomes. The resulting tree is consistent with clinic relations between the SARS-CoV isolates. In addition to a larger variety of coronavirus genomes these results provide phylogenetic knowledge based on independent novel methodology as compared to recent phylogenetic studies on SARS-CoV.

  5. Mutations in the control of virulence sensor gene from Streptococcus pyogenes after infection in mice lead to clonal bacterial variants with altered gene regulatory activity and virulence.

    Science.gov (United States)

    Mayfield, Jeffrey A; Liang, Zhong; Agrahari, Garima; Lee, Shaun W; Donahue, Deborah L; Ploplis, Victoria A; Castellino, Francis J

    2014-01-01

    The cluster of virulence sensor (CovS)/responder (CovR) two-component operon (CovRS) regulates ∼15% of the genes of the Group A Streptococcal pyogenes (GAS) genome. Bacterial clones containing inactivating mutations in the covS gene have been isolated from patients with virulent invasive diseases. We report herein an assessment of the nature and types of covS mutations that can occur in both virulent and nonvirulent GAS strains, and assess whether a nonvirulent GAS can attain enhanced virulence through this mechanism. A group of mice were infected with a globally-disseminated clonal M1T1 GAS (isolate 5448), containing wild-type (WT) CovRS (5448/CovR+S+), or less virulent engineered GAS strains, AP53/CovR+S+ and Manfredo M5/CovR+S+. SpeB negative GAS clones from wound sites and/or from bacteria disseminated to the spleen were isolated and the covS gene was subjected to DNA sequence analysis. Numerous examples of inactivating mutations were found in CovS in all regions of the gene. The mutations found included frame-shift insertions and deletions, and in-frame small and large deletions in the gene. Many of the mutations found resulted in early translation termination of CovS. Thus, the covS gene is a genomic mutagenic target that gives GAS enhanced virulence. In cases wherein CovS- was discovered, these clonal variants exhibited high lethality, further suggesting that randomly mutated covS genes occur during the course of infection, and lead to the development of a more invasive infection.

  6. Mutations in the control of virulence sensor gene from Streptococcus pyogenes after infection in mice lead to clonal bacterial variants with altered gene regulatory activity and virulence.

    Directory of Open Access Journals (Sweden)

    Jeffrey A Mayfield

    Full Text Available The cluster of virulence sensor (CovS/responder (CovR two-component operon (CovRS regulates ∼15% of the genes of the Group A Streptococcal pyogenes (GAS genome. Bacterial clones containing inactivating mutations in the covS gene have been isolated from patients with virulent invasive diseases. We report herein an assessment of the nature and types of covS mutations that can occur in both virulent and nonvirulent GAS strains, and assess whether a nonvirulent GAS can attain enhanced virulence through this mechanism. A group of mice were infected with a globally-disseminated clonal M1T1 GAS (isolate 5448, containing wild-type (WT CovRS (5448/CovR+S+, or less virulent engineered GAS strains, AP53/CovR+S+ and Manfredo M5/CovR+S+. SpeB negative GAS clones from wound sites and/or from bacteria disseminated to the spleen were isolated and the covS gene was subjected to DNA sequence analysis. Numerous examples of inactivating mutations were found in CovS in all regions of the gene. The mutations found included frame-shift insertions and deletions, and in-frame small and large deletions in the gene. Many of the mutations found resulted in early translation termination of CovS. Thus, the covS gene is a genomic mutagenic target that gives GAS enhanced virulence. In cases wherein CovS- was discovered, these clonal variants exhibited high lethality, further suggesting that randomly mutated covS genes occur during the course of infection, and lead to the development of a more invasive infection.

  7. Influence of hydrophobic and electrostatic residues on SARS-coronavirus S2 protein stability: insights into mechanisms of general viral fusion and inhibitor design.

    Science.gov (United States)

    Aydin, Halil; Al-Khooly, Dina; Lee, Jeffrey E

    2014-05-01

    Severe acute respiratory syndrome (SARS) is an acute respiratory disease caused by the SARS-coronavirus (SARS-CoV). SARS-CoV entry is facilitated by the spike protein (S), which consists of an N-terminal domain (S1) responsible for cellular attachment and a C-terminal domain (S2) that mediates viral and host cell membrane fusion. The SARS-CoV S2 is a potential drug target, as peptidomimetics against S2 act as potent fusion inhibitors. In this study, site-directed mutagenesis and thermal stability experiments on electrostatic, hydrophobic, and polar residues to dissect their roles in stabilizing the S2 postfusion conformation was performed. It was shown that unlike the pH-independent retroviral fusion proteins, SARS-CoV S2 is stable over a wide pH range, supporting its ability to fuse at both the plasma membrane and endosome. A comprehensive SARS-CoV S2 analysis showed that specific hydrophobic positions at the C-terminal end of the HR2, rather than electrostatics are critical for fusion protein stabilization. Disruption of the conserved C-terminal hydrophobic residues destabilized the fusion core and reduced the melting temperature by 30°C. The importance of the C-terminal hydrophobic residues led us to identify a 42-residue substructure on the central core that is structurally conserved in all existing CoV S2 fusion proteins (root mean squared deviation=0.4 Å). This is the first study to identify such a conserved substructure and likely represents a common foundation to facilitate viral fusion. We have discussed the role of key residues in the design of fusion inhibitors and the potential of the substructure as a general target for the development of novel therapeutics against CoV infections. © 2014 The Protein Society.

  8. SARS Basics

    Science.gov (United States)

    ... and Resources Related Links Clinician Registry Travelers' Health SARS Basics Fact Sheet Language: English Español (Spanish) Format: ... 3 pages] SARS [3 pages] SARS [3 pages] SARS? Severe acute respiratory syndrome (SARS) is a viral ...

  9. Combinatorial Synthetic Peptide Vaccine Strategy Protects against Hypervirulent CovR/S Mutant Streptococci.

    Science.gov (United States)

    Pandey, Manisha; Mortensen, Rasmus; Calcutt, Ainslie; Powell, Jessica; Batzloff, Michael R; Dietrich, Jes; Good, Michael F

    2016-04-15

    Cluster of virulence responder/sensor (CovR/S) mutant group A streptococci (GAS) are serious human pathogens of multiple M protein strains that upregulate expression of virulence factors, including the IL-8 proteaseStreptococcus pyogenescell envelope proteinase (SpyCEP), thus blunting neutrophil-mediated killing and enabling ingress of bacteria from a superficial wound to deep tissue. We previously showed that a combination vaccine incorporating J8-DT (conserved peptide vaccine from the M protein) and a recombinant SpyCEP fragment protects against CovR/S mutants. To enhance the vaccine's safety profile, we identified a minimal epitope (S2) that was the target for anti-SpyCEP Abs that could protect IL-8 from SpyCEP-mediated proteolysis. Abs from healthy humans and from mice experimentally infected with GAS also recognized S2, albeit at low titers. Native SpyCEP may be poorly immunogenic (cryptic or subdominant), and it would be to the organism's advantage if the host did not induce a strong Ab response against it. However, S2 conjugated to diphtheria toxoid is highly immunogenic and induces Abs that recognize and neutralize SpyCEP. Hence, we describe a two-component peptide vaccine that induces Abs (anti-S2) that protect IL-8 from proteolysis and other Abs (anti-J8) that cause strain-independent killing in the presence of neutrophils. We show that either component alone is ineffectual in preventing skin infection and bacteremia due to CovR/S mutants but that the combination induces complete protection. This protection correlated with a significant influx of neutrophils to the infection site. The data strongly suggest that the lack of natural immunity to hypervirulent GAS strains in humans could be rectified by this combination vaccine.

  10. Unraveling the complexities of the interferon response during SARS-CoV infection

    NARCIS (Netherlands)

    A. de Lang (Anna); T. Baas (Tracey); S.L. Smits (Saskia); M.G. Katze (Michael); A.D.M.E. Osterhaus (Albert); B.L. Haagmans (Bart)

    2009-01-01

    textabstractViruses employ different strategies to circumvent the antiviral actions of the innate immune response. SARS coronavirus (SARS-CoV), a virus that causes severe lung damage encodes an array of proteins able to inhibit induction and signaling of type-I interferons. However, recent studies h

  11. Unraveling the complexities of the interferon response during SARS-CoV infection

    NARCIS (Netherlands)

    A. de Lang (Anna); T. Baas (Tracey); S.L. Smits (Saskia); M.G. Katze (Michael); A.D.M.E. Osterhaus (Albert); B.L. Haagmans (Bart)

    2009-01-01

    textabstractViruses employ different strategies to circumvent the antiviral actions of the innate immune response. SARS coronavirus (SARS-CoV), a virus that causes severe lung damage encodes an array of proteins able to inhibit induction and signaling of type-I interferons. However, recent studies

  12. Proteolytic activation of the SARS-coronavirus spike protein: cutting enzymes at the cutting edge of antiviral research.

    Science.gov (United States)

    Simmons, Graham; Zmora, Pawel; Gierer, Stefanie; Heurich, Adeline; Pöhlmann, Stefan

    2013-12-01

    The severe acute respiratory syndrome (SARS) pandemic revealed that zoonotic transmission of animal coronaviruses (CoV) to humans poses a significant threat to public health and warrants surveillance and the development of countermeasures. The activity of host cell proteases, which cleave and activate the SARS-CoV spike (S) protein, is essential for viral infectivity and constitutes a target for intervention. However, the identities of the proteases involved have been unclear. Pioneer studies identified cathepsins and type II transmembrane serine proteases as cellular activators of SARS-CoV and demonstrated that several emerging viruses might exploit these enzymes to promote their spread. Here, we will review the proteolytic systems hijacked by SARS-CoV for S protein activation, we will discuss their contribution to viral spread in the host and we will outline antiviral strategies targeting these enzymes. This paper forms part of a series of invited articles in Antiviral Research on "From SARS to MERS: 10years of research on highly pathogenic human coronaviruses.'' Copyright © 2013 Elsevier B.V. All rights reserved.

  13. An Outbreak of Human Coronavirus OC43 Infection and Serological Cross-Reactivity with SARS Coronavirus

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    David M Patrick

    2006-01-01

    Full Text Available BACKGROUND: In summer 2003, a respiratory outbreak was investigated in British Columbia, during which nucleic acid tests and serology unexpectedly indicated reactivity for severe acute respiratory syndrome coronavirus (SARS-CoV.

  14. Dysregulated Type I Interferon and Inflammatory Monocyte-Macrophage Responses Cause Lethal Pneumonia in SARS-CoV-Infected Mice.

    Science.gov (United States)

    Channappanavar, Rudragouda; Fehr, Anthony R; Vijay, Rahul; Mack, Matthias; Zhao, Jincun; Meyerholz, David K; Perlman, Stanley

    2016-02-10

    Highly pathogenic human respiratory coronaviruses cause acute lethal disease characterized by exuberant inflammatory responses and lung damage. However, the factors leading to lung pathology are not well understood. Using mice infected with SARS (severe acute respiratory syndrome)-CoV, we show that robust virus replication accompanied by delayed type I interferon (IFN-I) signaling orchestrates inflammatory responses and lung immunopathology with diminished survival. IFN-I remains detectable until after virus titers peak, but early IFN-I administration ameliorates immunopathology. This delayed IFN-I signaling promotes the accumulation of pathogenic inflammatory monocyte-macrophages (IMMs), resulting in elevated lung cytokine/chemokine levels, vascular leakage, and impaired virus-specific T cell responses. Genetic ablation of the IFN-αβ receptor (IFNAR) or IMM depletion protects mice from lethal infection, without affecting viral load. These results demonstrate that IFN-I and IMM promote lethal SARS-CoV infection and identify IFN-I and IMMs as potential therapeutic targets in patients infected with pathogenic coronavirus and perhaps other respiratory viruses. Copyright © 2016 Elsevier Inc. All rights reserved.

  15. Human coronavirus EMC does not require the SARS-coronavirus receptor and maintains broad replicative capability in mammalian cell lines.

    Science.gov (United States)

    Müller, Marcel A; Raj, V Stalin; Muth, Doreen; Meyer, Benjamin; Kallies, Stephan; Smits, Saskia L; Wollny, Robert; Bestebroer, Theo M; Specht, Sabine; Suliman, Tasnim; Zimmermann, Katrin; Binger, Tabea; Eckerle, Isabella; Tschapka, Marco; Zaki, Ali M; Osterhaus, Albert D M E; Fouchier, Ron A M; Haagmans, Bart L; Drosten, Christian

    2012-12-11

    A new human coronavirus (hCoV-EMC) has emerged very recently in the Middle East. The clinical presentation resembled that of the severe acute respiratory syndrome (SARS) as encountered during the epidemic in 2002/2003. In both cases, acute renal failure was observed in humans. HCoV-EMC is a member of the same virus genus as SARS-CoV but constitutes a sister species. Here we investigated whether it might utilize angiotensin-converting enzyme 2 (ACE2), the SARS-CoV receptor. Knowledge of the receptor is highly critical because the restriction of the SARS receptor to deep compartments of the human respiratory tract limited the spread of SARS. In baby hamster kidney (BHK) cells, lentiviral transduction of human ACE2 (hACE2) conferred permissiveness and replication for SARS-CoV but not for hCoV-EMC. Monkey and human kidney cells (LLC-MK2, Vero, and 769-P) and swine kidney cells were permissive for both viruses, but only SARS-CoV infection could be blocked by anti-hACE2 antibody and could be neutralized by preincubation of virus with soluble ACE2. Our data show that ACE2 is neither necessary nor sufficient for hCoV-EMC replication. Moreover, hCoV-EMC, but not SARS-CoV, replicated in cell lines from Rousettus, Rhinolophus, Pipistrellus, Myotis, and Carollia bats, representing four major chiropteran families from both suborders. As human CoV normally cannot replicate in bat cells from different families, this suggests that hCoV-EMC might use a receptor molecule that is conserved in bats, pigs, and humans, implicating a low barrier against cross-host transmission. IMPORTANCE A new human coronavirus (hCoV) emerged recently in the Middle East. The disease resembled SARS (severe acute respiratory syndrome), causing a fatal epidemic in 2002/2003. Coronaviruses have a reservoir in bats and because this novel virus is related to SARS-CoV, we investigated whether it might replicate in bat cells and use the same receptor (angiotensin-converting enzyme 2 [ACE2]). This knowledge is

  16. Severe Acute Respiratory Syndrome (SARS) Coronavirus ORF8 Protein Is Acquired from SARS-Related Coronavirus from Greater Horseshoe Bats through Recombination.

    Science.gov (United States)

    Lau, Susanna K P; Feng, Yun; Chen, Honglin; Luk, Hayes K H; Yang, Wei-Hong; Li, Kenneth S M; Zhang, Yu-Zhen; Huang, Yi; Song, Zhi-Zhong; Chow, Wang-Ngai; Fan, Rachel Y Y; Ahmed, Syed Shakeel; Yeung, Hazel C; Lam, Carol S F; Cai, Jian-Piao; Wong, Samson S Y; Chan, Jasper F W; Yuen, Kwok-Yung; Zhang, Hai-Lin; Woo, Patrick C Y

    2015-10-01

    Despite the identification of horseshoe bats as the reservoir of severe acute respiratory syndrome (SARS)-related coronaviruses (SARSr-CoVs), the origin of SARS-CoV ORF8, which contains the 29-nucleotide signature deletion among human strains, remains obscure. Although two SARS-related Rhinolophus sinicus bat CoVs (SARSr-Rs-BatCoVs) previously detected in Chinese horseshoe bats (Rhinolophus sinicus) in Yunnan, RsSHC014 and Rs3367, possessed 95% genome identities to human and civet SARSr-CoVs, their ORF8 protein exhibited only 32.2 to 33% amino acid identities to that of human/civet SARSr-CoVs. To elucidate the origin of SARS-CoV ORF8, we sampled 348 bats of various species in Yunnan, among which diverse alphacoronaviruses and betacoronaviruses, including potentially novel CoVs, were identified, with some showing potential interspecies transmission. The genomes of two betacoronaviruses, SARSr-Rf-BatCoV YNLF_31C and YNLF_34C, from greater horseshoe bats (Rhinolophus ferrumequinum), possessed 93% nucleotide identities to human/civet SARSr-CoV genomes. Although these two betacoronaviruses displayed lower similarities than SARSr-Rs-BatCoV RsSHC014 and Rs3367 in S protein to civet SARSr-CoVs, their ORF8 proteins demonstrated exceptionally high (80.4 to 81.3%) amino acid identities to that of human/civet SARSr-CoVs, compared to SARSr-BatCoVs from other horseshoe bats (23.2 to 37.3%). Potential recombination events were identified around ORF8 between SARSr-Rf-BatCoVs and SARSr-Rs-BatCoVs, leading to the generation of civet SARSr-CoVs. The expression of ORF8 subgenomic mRNA suggested that the ORF8 protein may be functional in SARSr-Rf-BatCoVs. The high Ka/Ks ratio among human SARS-CoVs compared to that among SARSr-BatCoVs supported that ORF8 is under strong positive selection during animal-to-human transmission. Molecular clock analysis using ORF1ab showed that SARSr-Rf-BatCoV YNLF_31C and YNLF_34C diverged from civet/human SARSr-CoVs in approximately 1990. SARS-CoV ORF8

  17. Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections

    Directory of Open Access Journals (Sweden)

    Müller Marcel A

    2005-02-01

    Full Text Available Abstract Ten potential reference genes were compared for their use in experiments investigating cellular mRNA expression of virus infected cells. Human cell lines were infected with Cytomegalovirus, Human Herpesvirus-6, Camelpox virus, SARS coronavirus or Yellow fever virus. The expression levels of these genes and the viral replication were determined by real-time PCR. Genes were ranked by the BestKeeper tool, the GeNorm tool and by criteria we reported previously. Ranking lists of the genes tested were tool dependent. However, over all, β-actin is an unsuitable as reference gene, whereas TATA-Box binding protein and peptidyl-prolyl-isomerase A are stable reference genes for expression studies in virus infected cells.

  18. Activation of the SMU.1882 transcription by CovR in Streptococcus mutans.

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    Patrick Chong

    Full Text Available In Streptococcus mutans, the global response regulator CovR plays an important role in biofilm formation, stress-tolerance response, and caries production. We have previously shown that CovR acts as a transcriptional repressor by binding to the upstream promoter regions of its target genes. Here, we report that in vivo, CovR activates the transcription of SMU.1882, which encodes a small peptide containing a double-glycine motif. We also show that SMU.1882 is transcriptionally linked to comA that encodes a putative ABC transporter protein. Several genes from man gene clusters that encode mannose phosphotranferase system flank SMU.1882 -comA genes. Genomic comparison with other streptococci indicates that SMU.1882 is uniquely present in S. mutans, while the man operon is conserved among all streptococci, suggesting that a genetic rearrangement might have taken place at this locus. With the use of a transcriptional reporter system and semi-quantitative RT-PCR, we demonstrated the transcriptional regulation of SMU.1882 by CovR. In vitro gel shift and DNase I foot-printing analyses with purified CovR suggest that CovR binds to a large region surrounding the -10 region of the P(1882. Using this information and comparing with other CovR regulated promoters, we have developed a putative consensus binding sequence for CovR. Although CovR binds to P(1882, in vitro experiments using purified S. mutans RpoD, E. coli RNA polymerase, and CovR did not activate transcription from this promoter. Thus, we speculate that in vivo, CovR may interfere with the binding of a repressor or requires a cofactor.

  19. Three-Dimensional Human Bronchial-Tracheal Epithelial Tissue-Like Assemblies (TLAs) as Hosts For Severe Acute Respiratory Syndrome (SARS)-CoV Infection

    Science.gov (United States)

    Suderman, M. T.; McCarthy, M.; Mossell, E.; Watts, D. M.; Peters, C. J.; Shope, R.; Goodwin, T. J.

    2006-01-01

    A three-dimensional (3-D) tissue-like assembly (TLA) of human bronchial-tracheal mesenchymal (HBTC) cells with an overlay of human bronchial epithelial (BEAS-2B) cells was constructed using a NASA Bioreactor to survey the infectivity of SARS-CoV. This TLA was inoculated with a low passage number Urbani strain of SARS-CoV. At selected intervals over a 10-day period, media and cell aliquots of the 3-D TLA were harvested for viral titer assay and for light and electron microscopy examination. All viral titer assays were negative in both BEAS-2B two-dimensional monolayer and TLA. Light microscopy immunohistochemistry demonstrated antigen-antibody reactivity with anti-SARS-CoV polyclonal antibody to spike and nuclear proteins on cell membranes and cytoplasm. Coronavirus Group 2 cross-reactivity was demonstrated by positive reaction to anti-FIPV 1 and anti-FIPV 1 and 2 antibodies. TLA examination by transmission electron microscopy indicated increasing cytoplasmic vacuolation with numerous electron-dense bodies measuring 45 to 270 nm from days 4 through 10. There was no evidence of membrane blebbing, membrane duplication, or fragmentation of organelles in the TLAs. However, progressive disruption of endoplasmic reticulum was observed throughout the cells. Antibody response to SARS-CoV specific spike and nucleocapsid glycoproteins, cross-reactivity with FIPV antibodies, and the cytoplasmic pathology suggests this HBTE TLA model is permissive to SARS-CoV infection.

  20. Generalized interpretation scheme for arbitrary HR InSAR image pairs

    Science.gov (United States)

    Boldt, Markus; Thiele, Antje; Schulz, Karsten

    2013-10-01

    Land cover classification of remote sensing imagery is an important topic of research. For example, different applications require precise and fast information about the land cover of the imaged scenery (e.g., disaster management and change detection). Focusing on high resolution (HR) spaceborne remote sensing imagery, the user has the choice between passive and active sensor systems. Passive systems, such as multispectral sensors, have the disadvantage of being dependent from weather influences (fog, dust, clouds, etc.) and time of day, since they work in the visible part of the electromagnetic spectrum. Here, active systems like Synthetic Aperture Radar (SAR) provide improved capabilities. As an interactive method analyzing HR InSAR image pairs, the CovAmCohTM method was introduced in former studies. CovAmCoh represents the joint analysis of locality (coefficient of variation - Cov), backscatter (amplitude - Am) and temporal stability (coherence - Coh). It delivers information on physical backscatter characteristics of imaged scene objects or structures and provides the opportunity to detect different classes of land cover (e.g., urban, rural, infrastructure and activity areas). As example, railway tracks are easily distinguishable from other infrastructure due to their characteristic bluish coloring caused by the gravel between the sleepers. In consequence, imaged objects or structures have a characteristic appearance in CovAmCoh images which allows the development of classification rules. In this paper, a generalized interpretation scheme for arbitrary InSAR image pairs using the CovAmCoh method is proposed. This scheme bases on analyzing the information content of typical CovAmCoh imagery using the semisupervised k-means clustering. It is shown that eight classes model the main local information content of CovAmCoh images sufficiently and can be used as basis for a classification scheme.

  1. The aetiology of SARS: Koch's postulates fulfilled

    NARCIS (Netherlands)

    A.D.M.E. Osterhaus (Albert); R.A.M. Fouchier (Ron); T. Kuiken (Thijs)

    2004-01-01

    textabstractProof that a newly identified coronavirus, severe acute respiratory syndrome coronavirus (SARS-CoV) is the primary cause of severe acute respiratory syndrome (SARS) came from a series of studies on experimentally infected cynomolgus macaques (Macaca, fascicularis). SARS-CoV-infected

  2. Qualitative study on the shifting sociocultural meanings of the facemask in Hong Kong since the severe acute respiratory syndrome (SARS) outbreak: implications for infection control in the post-SARS era.

    Science.gov (United States)

    Siu, Judy Yuen-Man

    2016-05-04

    The clinical importance and efficacy of facemasks in infection prevention have been documented in the international literature. Past studies have shown that the perceived susceptibility, the perceived severity of being afflicted with life-threatening diseases, and the perceived benefits of using a facemask are predictors of a person's use of a facemask. However, I argue that people wear a facemask not merely for infection prevention, and various sociocultural reasons have been motivating people to wear (and not wear) a facemask. Facemasks thus have sociocultural implications for people. Research on the sociocultural meanings of facemasks is scant, and even less is known on how the shifting sociocultural meanings of facemasks are related to the changing social environment, which, I argue, serve as remarkable underlying factors for people using (and not using) facemasks. As new infectious diseases such as avian influenza and Middle East Respiratory Syndrome have been emerging, threatening people's health worldwide, and because facemasks have been documented to have substantial efficacy in the prevention of infection transmission, understanding the sociocultural meanings of facemasks has significant implications for public health policymakers and health care providers in designing a socially and culturally responsive public health and infection control policy for the community. A qualitative research design involving the use of 40 individual, in-depth semistructured interviews and a phenomenological analysis approach were adopted. The sociocultural meanings of the facemask have been undergoing constant change, from positive to negative, which resulted in the participants displaying hesitation in using a facemask in the post-SARS era. Because it represents a violation of societal ideologies and traditional Chinese cultural beliefs, the meanings of the facemask that had developed during the SARS outbreak failed to be sustained in the post-SARS era. The changes in

  3. CovR-controlled global regulation of gene expression in Streptococcus mutans.

    Directory of Open Access Journals (Sweden)

    Alexander Dmitriev

    Full Text Available CovR/S is a two-component signal transduction system (TCS that controls the expression of various virulence related genes in many streptococci. However, in the dental pathogen Streptococcus mutans, the response regulator CovR appears to be an orphan since the cognate sensor kinase CovS is absent. In this study, we explored the global transcriptional regulation by CovR in S. mutans. Comparison of the transcriptome profiles of the wild-type strain UA159 with its isogenic covR deleted strain IBS10 indicated that at least 128 genes (∼6.5% of the genome were differentially regulated. Among these genes, 69 were down regulated, while 59 were up regulated in the IBS10 strain. The S. mutans CovR regulon included competence genes, virulence related genes, and genes encoded within two genomic islands (GI. Genes encoded by the GI TnSmu2 were found to be dramatically reduced in IBS10, while genes encoded by the GI TnSmu1 were up regulated in the mutant. The microarray data were further confirmed by real-time RT-PCR analyses. Furthermore, direct regulation of some of the differentially expressed genes was demonstrated by electrophoretic mobility shift assays using purified CovR protein. A proteomic study was also carried out that showed a general perturbation of protein expression in the mutant strain. Our results indicate that CovR truly plays a significant role in the regulation of several virulence related traits in this pathogenic streptococcus.

  4. Prophylactic and therapeutic intranasal administration with an immunomodulator, Hiltonol(®) (Poly IC:LC), in a lethal SARS-CoV-infected BALB/c mouse model.

    Science.gov (United States)

    Kumaki, Yohichi; Salazar, Andres M; Wandersee, Miles K; Barnard, Dale L

    2017-03-01

    Hiltonol(®), (Poly IC:LC), a potent immunomodulator, is a synthetic, double-stranded polyriboinosinic-polyribocytidylic acid (poly IC) stabilized with Poly-L-lysine and carboxymethyl cellulose (LC). Hiltonol(®) was tested for efficacy in a lethal SARS-CoV-infected BALB/c mouse model. Hiltonol(®) at 5, 1, 0.5 or 0.25 mg/kg/day by intranasal (i.n.) route resulted in significant survival benefit when administered at selected times 24 h prior to challenge with a lethal dose of mouse-adapted severe acute respiratory syndrome coronavirus (SARS-CoV). The infected BALB/c mice receiving the Hiltonol(®) treatments were also significantly effective in protecting mice against weight loss due to infection (p SARS-CoV infection in mice leads to substantial prophylactic and therapeutic effects and could be used for treatment of other virus disease such as those caused by MERS-CoV a related coronavirus. These properties might be therapeutically advantageous if Hiltonol(®) is considered for possible clinical use. Published by Elsevier B.V.

  5. Substitution at Aspartic Acid 1128 in the SARS Coronavirus Spike Glycoprotein Mediates Escape from a S2 Domain-Targeting Neutralizing Monoclonal Antibody

    Science.gov (United States)

    Ng, Oi-Wing; Keng, Choong-Tat; Leung, Cynthia Sau-Wai; Peiris, J. S. Malik; Poon, Leo Lit Man; Tan, Yee-Joo

    2014-01-01

    The Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) is the etiological agent for the infectious disease, SARS, which first emerged 10 years ago. SARS-CoV is a zoonotic virus that has crossed the species barriers to infect humans. Bats, which harbour a diverse pool of SARS-like CoVs (SL-CoVs), are believed to be the natural reservoir. The SARS-CoV surface Spike (S) protein is a major antigenic determinant in eliciting neutralizing antibody production during SARS-CoV infection. In our previous work, we showed that a panel of murine monoclonal antibodies (mAbs) that target the S2 subunit of the S protein are capable of neutralizing SARS-CoV infection in vitro (Lip KM et al, J Virol. 2006 Jan; 80(2): 941–50). In this study, we report our findings on the characterization of one of these mAbs, known as 1A9, which binds to the S protein at a novel epitope within the S2 subunit at amino acids 1111–1130. MAb 1A9 is a broadly neutralizing mAb that prevents viral entry mediated by the S proteins of human and civet SARS-CoVs as well as bat SL-CoVs. By generating mutant SARS-CoV that escapes the neutralization by mAb 1A9, the residue D1128 in S was found to be crucial for its interaction with mAb 1A9. S protein containing the substitution of D1128 with alanine (D1128A) exhibited a significant decrease in binding capability to mAb 1A9 compared to wild-type S protein. By using a pseudotyped viral entry assay, it was shown that the D1128A substitution in the escape virus allows it to overcome the viral entry blockage by mAb 1A9. In addition, the D1128A mutation was found to exert no effects on the S protein cell surface expression and incorporation into virion particles, suggesting that the escape virus retains the same viral entry property as the wild-type virus. PMID:25019613

  6. Substitution at aspartic acid 1128 in the SARS coronavirus spike glycoprotein mediates escape from a S2 domain-targeting neutralizing monoclonal antibody.

    Directory of Open Access Journals (Sweden)

    Oi-Wing Ng

    Full Text Available The Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV is the etiological agent for the infectious disease, SARS, which first emerged 10 years ago. SARS-CoV is a zoonotic virus that has crossed the species barriers to infect humans. Bats, which harbour a diverse pool of SARS-like CoVs (SL-CoVs, are believed to be the natural reservoir. The SARS-CoV surface Spike (S protein is a major antigenic determinant in eliciting neutralizing antibody production during SARS-CoV infection. In our previous work, we showed that a panel of murine monoclonal antibodies (mAbs that target the S2 subunit of the S protein are capable of neutralizing SARS-CoV infection in vitro (Lip KM et al, J Virol. 2006 Jan; 80(2: 941-50. In this study, we report our findings on the characterization of one of these mAbs, known as 1A9, which binds to the S protein at a novel epitope within the S2 subunit at amino acids 1111-1130. MAb 1A9 is a broadly neutralizing mAb that prevents viral entry mediated by the S proteins of human and civet SARS-CoVs as well as bat SL-CoVs. By generating mutant SARS-CoV that escapes the neutralization by mAb 1A9, the residue D1128 in S was found to be crucial for its interaction with mAb 1A9. S protein containing the substitution of D1128 with alanine (D1128A exhibited a significant decrease in binding capability to mAb 1A9 compared to wild-type S protein. By using a pseudotyped viral entry assay, it was shown that the D1128A substitution in the escape virus allows it to overcome the viral entry blockage by mAb 1A9. In addition, the D1128A mutation was found to exert no effects on the S protein cell surface expression and incorporation into virion particles, suggesting that the escape virus retains the same viral entry property as the wild-type virus.

  7. Substitution at aspartic acid 1128 in the SARS coronavirus spike glycoprotein mediates escape from a S2 domain-targeting neutralizing monoclonal antibody.

    Science.gov (United States)

    Ng, Oi-Wing; Keng, Choong-Tat; Leung, Cynthia Sau-Wai; Peiris, J S Malik; Poon, Leo Lit Man; Tan, Yee-Joo

    2014-01-01

    The Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) is the etiological agent for the infectious disease, SARS, which first emerged 10 years ago. SARS-CoV is a zoonotic virus that has crossed the species barriers to infect humans. Bats, which harbour a diverse pool of SARS-like CoVs (SL-CoVs), are believed to be the natural reservoir. The SARS-CoV surface Spike (S) protein is a major antigenic determinant in eliciting neutralizing antibody production during SARS-CoV infection. In our previous work, we showed that a panel of murine monoclonal antibodies (mAbs) that target the S2 subunit of the S protein are capable of neutralizing SARS-CoV infection in vitro (Lip KM et al, J Virol. 2006 Jan; 80(2): 941-50). In this study, we report our findings on the characterization of one of these mAbs, known as 1A9, which binds to the S protein at a novel epitope within the S2 subunit at amino acids 1111-1130. MAb 1A9 is a broadly neutralizing mAb that prevents viral entry mediated by the S proteins of human and civet SARS-CoVs as well as bat SL-CoVs. By generating mutant SARS-CoV that escapes the neutralization by mAb 1A9, the residue D1128 in S was found to be crucial for its interaction with mAb 1A9. S protein containing the substitution of D1128 with alanine (D1128A) exhibited a significant decrease in binding capability to mAb 1A9 compared to wild-type S protein. By using a pseudotyped viral entry assay, it was shown that the D1128A substitution in the escape virus allows it to overcome the viral entry blockage by mAb 1A9. In addition, the D1128A mutation was found to exert no effects on the S protein cell surface expression and incorporation into virion particles, suggesting that the escape virus retains the same viral entry property as the wild-type virus.

  8. SARS-coronavirus open reading frame-9b suppresses innate immunity by targeting mitochondria and the MAVS/TRAF3/TRAF6 signalosome.

    Science.gov (United States)

    Shi, Chong-Shan; Qi, Hai-Yan; Boularan, Cedric; Huang, Ning-Na; Abu-Asab, Mones; Shelhamer, James H; Kehrl, John H

    2014-09-15

    Coronaviruses (CoV) have recently emerged as potentially serious pathogens that can cause significant human morbidity and death. The severe acute respiratory syndrome (SARS)-CoV was identified as the etiologic agent of the 2002-2003 international SARS outbreak. Yet, how SARS evades innate immune responses to cause human disease remains poorly understood. In this study, we show that a protein encoded by SARS-CoV designated as open reading frame-9b (ORF-9b) localizes to mitochondria and causes mitochondrial elongation by triggering ubiquitination and proteasomal degradation of dynamin-like protein 1, a host protein involved in mitochondrial fission. Also, acting on mitochondria, ORF-9b targets the mitochondrial-associated adaptor molecule MAVS signalosome by usurping PCBP2 and the HECT domain E3 ligase AIP4 to trigger the degradation of MAVS, TRAF3, and TRAF 6. This severely limits host cell IFN responses. Reducing either PCBP2 or AIP4 expression substantially reversed the ORF-9b-mediated reduction of MAVS and the suppression of antiviral transcriptional responses. Finally, transient ORF-9b expression led to a strong induction of autophagy in cells. The induction of autophagy depended upon ATG5, a critical autophagy regulator, but the inhibition of MAVS signaling did not. These results indicate that SARS-CoV ORF-9b manipulates host cell mitochondria and mitochondrial function to help evade host innate immunity. This study has uncovered an important clue to the pathogenesis of SARS-CoV infection and illustrates the havoc that a small ORF can cause in cells.

  9. Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system.

    Science.gov (United States)

    Mitrophanov, Alexander Y; Churchward, Gordon; Borodovsky, Mark

    2007-05-07

    The CovR/S system in Streptococcus pyogenes (Group A Streptococcus, or GAS), a two-component signal transduction/transcription regulation system, controls the expression of major virulence factors. The presence of a negative feedback loop distinguishes the CovR/S system from the majority of bacterial two-component systems. We developed a deterministic model of the CovR/S system consisting of eight delay differential equations. Computational experiments showed that the system possessed a unique stable steady state. The dynamical behavior of the system showed a tendency for oscillations becoming more pronounced for longer but still biochemically realistic delays resulting from reductions in the rates of translation elongation. We have devised an efficient procedure for computing the system's steady state. Further, we have shown that the signal-response curves are hyperbolic for the default parameter values. However, in experiments with randomized parameters we demonstrated that sigmoidality of signal-response curves, implying a response threshold, is not only possible, but seems to be rather typical for CovR/S-like systems even when binding of the CovR response regulator protein to a promoter is non-cooperative. We used sensitivity analysis to simplify the model in order to make it analytically tractable. The existence and uniqueness of the steady state and hyperbolicity of signal-response curves for the majority of the variables was proved for the simplified model. Also, we found that provided CovS was active, the system was insensitive to changes in the concentration of any other phosphoryl donor such as acetyl phosphate.

  10. SARS-like cluster of circulating bat coronavirus pose threat for human emergence

    Science.gov (United States)

    Menachery, Vineet D.; Yount, Boyd L.; Debbink, Kari; Agnihothram, Sudhakar; Gralinski, Lisa E.; Plante, Jessica A.; Graham, Rachel L.; Scobey, Trevor; Ge, Xing-Yi; Donaldson, Eric F.; Randell, Scott H.; Lanzavecchia, Antonio; Marasco, Wayne A.; Shi, Zhengli-Li; Baric, Ralph S.

    2016-01-01

    The emergence of Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome (MERS)-CoV underscores the threat of cross-species transmission events leading to outbreaks in humans. In this study, we examine the disease potential for SARS-like CoVs currently circulating in Chinese horseshoe bat populations. Utilizing the SARS-CoV infectious clone, we generated and characterized a chimeric virus expressing the spike of bat coronavirus SHC014 in a mouse adapted SARS-CoV backbone. The results indicate that group 2b viruses encoding the SHC014 spike in a wild type backbone can efficiently utilize multiple ACE2 receptor orthologs, replicate efficiently in primary human airway cells, and achieve in vitro titers equivalent to epidemic strains of SARS-CoV. Additionally, in vivo experiments demonstrate replication of the chimeric virus in mouse lung with notable pathogenesis. Evaluation of available SARS-based immune-therapeutic and prophylactic modalities revealed poor efficacy; both monoclonal antibody and vaccine approaches failed to neutralize and protect from CoVs utilizing the novel spike protein. Importantly, based on these findings, we synthetically rederived an infectious full length SHC014 recombinant virus and demonstrate robust viral replication both in vitro and in vivo. Together, the work highlights a continued risk of SARS-CoV reemergence from viruses currently circulating in bat populations. PMID:26552008

  11. SARS Transmission among Hospital Workers in Hong Kong

    OpenAIRE

    Lau, Joseph T F; Fung, Kitty S.; Wong, Tze Wai; Kim, Jean H; Wong, Eric; Chung, Sydney; Ho, Deborah; Chan, Louis Y; Lui, S F; Cheng, Augustine

    2004-01-01

    Despite infection control measures, breakthrough transmission of severe acute respiratory syndrome (SARS) occurred for many hospital workers in Hong Kong. We conducted a case-control study of 72 hospital workers with SARS and 144 matched controls. Inconsistent use of goggles, gowns, gloves, and caps was associated with a higher risk for SARS infection (unadjusted odds ratio 2.42 to 20.54, p < 0.05). The likelihood of SARS infection was strongly associated with the amount of personal protectio...

  12. Transmission of SARS and MERS coronaviruses and influenza virus in healthcare settings: the possible role of dry surface contamination.

    Science.gov (United States)

    Otter, J A; Donskey, C; Yezli, S; Douthwaite, S; Goldenberg, S D; Weber, D J

    2016-03-01

    Viruses with pandemic potential including H1N1, H5N1, and H5N7 influenza viruses, and severe acute respiratory syndrome (SARS)/Middle East respiratory syndrome (MERS) coronaviruses (CoV) have emerged in recent years. SARS-CoV, MERS-CoV, and influenza virus can survive on surfaces for extended periods, sometimes up to months. Factors influencing the survival of these viruses on surfaces include: strain variation, titre, surface type, suspending medium, mode of deposition, temperature and relative humidity, and the method used to determine the viability of the virus. Environmental sampling has identified contamination in field-settings with SARS-CoV and influenza virus, although the frequent use of molecular detection methods may not necessarily represent the presence of viable virus. The importance of indirect contact transmission (involving contamination of inanimate surfaces) is uncertain compared with other transmission routes, principally direct contact transmission (independent of surface contamination), droplet, and airborne routes. However, influenza virus and SARS-CoV may be shed into the environment and be transferred from environmental surfaces to hands of patients and healthcare providers. Emerging data suggest that MERS-CoV also shares these properties. Once contaminated from the environment, hands can then initiate self-inoculation of mucous membranes of the nose, eyes or mouth. Mathematical and animal models, and intervention studies suggest that contact transmission is the most important route in some scenarios. Infection prevention and control implications include the need for hand hygiene and personal protective equipment to minimize self-contamination and to protect against inoculation of mucosal surfaces and the respiratory tract, and enhanced surface cleaning and disinfection in healthcare settings.

  13. Reovirus, isolated from SARS patients

    Institute of Scientific and Technical Information of China (English)

    DUAN Qing; SONG Lihua; GAN Yonghua; TAN Hua; JIN Baofeng; LI Huiyan; ZUO Tingting; CHEN Dehui; ZHANG Xuemin; ZHU Hong; YANG Yi; LI Weihua; ZHOU Yusen; HE Jun; HE Kun; ZHANG Haojie; ZHOU Tao

    2003-01-01

    Beijing has been severely affected by SARS, and SARS-associated coronavirus has been confirmed as its cause. However, clinical and experimental evidence implicates the possibility of co-infection. In this report, reovirus was isolated from throat swabs of SARS patients, including the first case in Beijing andher mother. Identification with the electron microscopy revealed the characteristic features of reovirus. 24 of 38 samples from other SARS cases were found to have serologic responses to the reovirus. Primers designed for reovirus have amplified several fragments of DNA, one of which was sequenced (S2 gene fragment), which indicates it as a unique reovirus (orthoreovirus). Preliminary animal experiment showed that inoculation of the reovirus in mice caused death with atypical pneumonia. Nevertheless, the association of reovirus with SARS outbreak requires to be further investigated.

  14. Evasion by stealth: inefficient immune activation underlies poor T cell response and severe disease in SARS-CoV-infected mice.

    Directory of Open Access Journals (Sweden)

    Jincun Zhao

    2009-10-01

    Full Text Available Severe Acute Respiratory Syndrome caused substantial morbidity and mortality during the 2002-2003 epidemic. Many of the features of the human disease are duplicated in BALB/c mice infected with a mouse-adapted version of the virus (MA15, which develop respiratory disease with high morbidity and mortality. Here, we show that severe disease is correlated with slow kinetics of virus clearance and delayed activation and transit of respiratory dendritic cells (rDC to the draining lymph nodes (DLN with a consequent deficient virus-specific T cell response. All of these defects are corrected when mice are treated with liposomes containing clodronate, which deplete alveolar macrophages (AM. Inhibitory AMs are believed to prevent the development of immune responses to environmental antigens and allergic responses by interacting with lung dendritic cells and T cells. The inhibitory effects of AM can also be nullified if mice or AMs are pretreated with poly I:C, which directly activate AMs and rDCs through toll-like receptors 3 (TLR3. Further, adoptive transfer of activated but not resting bone marrow-derived dendritic cells (BMDC protect mice from lethal MA15 infection. These results may be relevant for SARS in humans, which is also characterized by prolonged virus persistence and delayed development of a SARS-CoV-specific immune response in individuals with severe disease.

  15. Combinatorial synthetic peptide vaccine strategy protects against hypervirulent CovR/S mutant streptococci

    DEFF Research Database (Denmark)

    Pandey, Manisha; Mortensen, Rasmus; Calcutt, Ainslie;

    2016-01-01

    Cluster of virulence responder/sensor (CovR/S) mutant group A streptococci (GAS) are serious human pathogens of multiple M protein strains that upregulate expression of virulence factors, including the IL-8 protease Streptococcus pyogenes cell envelope proteinase (SpyCEP), thus blunting neutrophi...

  16. Innate immune response of human alveolar type II cells infected with severe acute respiratory syndrome-coronavirus.

    Science.gov (United States)

    Qian, Zhaohui; Travanty, Emily A; Oko, Lauren; Edeen, Karen; Berglund, Andrew; Wang, Jieru; Ito, Yoko; Holmes, Kathryn V; Mason, Robert J

    2013-06-01

    Severe acute respiratory syndrome (SARS)-coronavirus (CoV) produces a devastating primary viral pneumonia with diffuse alveolar damage and a marked increase in circulating cytokines. One of the major cell types to be infected is the alveolar type II cell. However, the innate immune response of primary human alveolar epithelial cells infected with SARS-CoV has not been defined. Our objectives included developing a culture system permissive for SARS-CoV infection in primary human type II cells and defining their innate immune response. Culturing primary human alveolar type II cells at an air-liquid interface (A/L) improved their differentiation and greatly increased their susceptibility to infection, allowing us to define their primary interferon and chemokine responses. Viral antigens were detected in the cytoplasm of infected type II cells, electron micrographs demonstrated secretory vesicles filled with virions, virus RNA concentrations increased with time, and infectious virions were released by exocytosis from the apical surface of polarized type II cells. A marked increase was evident in the mRNA concentrations of interferon-β and interferon-λ (IL-29) and in a large number of proinflammatory cytokines and chemokines. A surprising finding involved the variability of expression of angiotensin-converting enzyme-2, the SARS-CoV receptor, in type II cells from different donors. In conclusion, the cultivation of alveolar type II cells at an air-liquid interface provides primary cultures in which to study the pulmonary innate immune responses to infection with SARS-CoV, and to explore possible therapeutic approaches to modulating these innate immune responses.

  17. Single crystal growth and magnetic excitations of transistion metal oxide CoV2 O6

    Science.gov (United States)

    Stockdale, Christopher; Wallington, F.; Taylor, J. W.; Garcia-Sakai, V.; Arevalo-Lopez, A. M.; Attfield, P.; Stock, C.

    2015-03-01

    Low-dimensional magnetic materials are an area of interest due to their unusual properties such as metamagnetism and magnetization plateaus. Solid state synthesis has produced polycrystalline CoV2O6 which exists in two polymorphs: one with a monoclinic structure, and the other with a triclinic structure. Single crystals have been grown from polycrystalline CoV2O6 using the flux method under vacuum and are large enough to aid in single crystal neutron diffraction. Magnetic excitations have been measured using powder neutron diffraction in the low temperatures regime with variable energy. The magnetic excitations have been compared between the two phases. The energy of the system has been modelled in terms of the spin-orbit coupling, structural distortions, and the crystal field and compared to neutron data.

  18. The Conserved Coronavirus Macrodomain Promotes Virulence and Suppresses the Innate Immune Response during Severe Acute Respiratory Syndrome Coronavirus Infection

    Directory of Open Access Journals (Sweden)

    Anthony R. Fehr

    2016-12-01

    Full Text Available ADP-ribosylation is a common posttranslational modification that may have antiviral properties and impact innate immunity. To regulate this activity, macrodomain proteins enzymatically remove covalently attached ADP-ribose from protein targets. All members of the Coronavirinae, a subfamily of positive-sense RNA viruses, contain a highly conserved macrodomain within nonstructural protein 3 (nsp3. However, its function or targets during infection remain unknown. We identified several macrodomain mutations that greatly reduced nsp3’s de-ADP-ribosylation activity in vitro. Next, we created recombinant severe acute respiratory syndrome coronavirus (SARS-CoV strains with these mutations. These mutations led to virus attenuation and a modest reduction of viral loads in infected mice, despite normal replication in cell culture. Further, macrodomain mutant virus elicited an early, enhanced interferon (IFN, interferon-stimulated gene (ISG, and proinflammatory cytokine response in mice and in a human bronchial epithelial cell line. Using a coinfection assay, we found that inclusion of mutant virus in the inoculum protected mice from an otherwise lethal SARS-CoV infection without reducing virus loads, indicating that the changes in innate immune response were physiologically significant. In conclusion, we have established a novel function for the SARS-CoV macrodomain that implicates ADP-ribose in the regulation of the innate immune response and helps to demonstrate why this domain is conserved in CoVs.

  19. Orbital degeneracy near the itinerant electron limit in CoV2 O4

    Science.gov (United States)

    Reig-I-Plessis, D.; Casavant, D.; Garlea, V. O.; Aczel, A. A.; Feygenson, M.; Neuefeind, J.; Zhou, H. D.; Nagler, S. E.; MacDougall, G. J.

    Vanadium spinels, AV2O4 have both magnetic frustration and orbital degeneracy on the V3+ sublattice, which lead to strong coupling of the orbital, lattice and spin degrees of freedom. Additionally, upon decreasing the V-V distance, the material is predicted to go from a Mott insulator to a metallic phase. Of all the materials in the AV2O4 series, CoV2O4 is closest to the predicted transition, and it's debated whether it may be fully described by either localized or itinerant electrons pictures. In all other studied vanadium spinels, there is a cubic to tetragonal transition associated with ordering of the degenerate V3+ orbitals, consistent with a local orbital picture but, this transition is surprisingly absent from CoV2O4 despite being an insulator with local spins. In this talk we present recent high resolution neutron diffraction and inelastic scattering measurements by our group on powders of CoV2O4. Diffraction data show there is small but clear first order structural transition present which correlates with canting of the V3+ spins, while inelastic data are well described by a local spinwave picture. We discuss how these results contribute evidence of a local orbital ordering phase in the region near electron itinerancy. This work was sponsored by NSF Grant DMR-145526.

  20. Understanding bat SARS-like coronaviruses for the preparation of future coronavirus outbreaks - Implications for coronavirus vaccine development.

    Science.gov (United States)

    Ng, Oi-Wing; Tan, Yee-Joo

    2017-01-02

    The severe acute respiratory syndrome coronavirus (SARS-CoV) first emerged in 2003, causing the SARS epidemic which resulted in a 10% fatality rate. The advancements in metagenomic techniques have allowed the identification of SARS-like coronaviruses (SL-CoVs) sequences that share high homology to the human SARS-CoV epidemic strains from wildlife bats, presenting concrete evidence that bats are the origin and natural reservoir of SARS-CoV. The application of reverse genetics further enabled that characterization of these bat CoVs and the prediction of their potential to cause disease in humans. The knowledge gained from such studies is valuable in the surveillance and preparation of a possible future outbreak caused by a spill-over of these bat SL-CoVs.

  1. Bird flu: lessons from SARS.

    Science.gov (United States)

    Wong, Gary W K; Leung, Ting F

    2007-06-01

    Severe acute respiratory syndrome (SARS) and avian influenza are two important newly emerged infections with pandemic potential. Both infections have crossed the species barrier to infect humans. SARS originated from southern China and spread to many countries in early 2003. The close collaboration of scientists around the world resulted in a rapid identification of the causative agent, and the early isolation of infected cases and meticulous infection control measures were the key to successfully controlling the outbreak of SARS. The first outbreak of human cases of avian influenza was reported in 1997 in Hong Kong. Since 2003, there have been many small outbreaks of human cases around the world, and the reported mortality is greater than 50%. Current evidence suggests that the human-to-human transmission of avian influenza is rather inefficient, but mutation might occur in the future resulting in improved transmission and possibly a pandemic in humans. As with the outbreak of SARS, the development of sensitive and accurate early diagnostic tests is extremely important for successful control of the outbreak at source. The availability of isolation facilities, the stockpiling of antiviral agents and effective and safe vaccination will be extremely important in minimising the damage of a new influenza pandemic.

  2. COV2HTML: a visualization and analysis tool of bacterial next generation sequencing (NGS) data for postgenomics life scientists.

    Science.gov (United States)

    Monot, Marc; Orgeur, Mickael; Camiade, Emilie; Brehier, Clément; Dupuy, Bruno

    2014-03-01

    COV2HTML is an interactive web interface, which is addressed to biologists, and allows performing both coverage visualization and analysis of NGS alignments performed on prokaryotic organisms (bacteria and phages). It combines two processes: a tool that converts the huge NGS mapping or coverage files into light specific coverage files containing information on genetic elements; and a visualization interface allowing a real-time analysis of data with optional integration of statistical results. To demonstrate the scope of COV2HTML, the program was tested with data from two published studies. The first data were from RNA-seq analysis of Campylobacter jejuni, based on comparison of two conditions with two replicates. We were able to recover 26 out of 27 genes highlighted in the publication using COV2HTML. The second data comprised of stranded TSS and RNA-seq data sets on the Archaea Sulfolobus solfataricus. COV2HTML was able to highlight most of the TSSs from the article and allows biologists to visualize both TSS and RNA-seq on the same screen. The strength of the COV2HTML interface is making possible NGS data analysis without software installation, login, or a long training period. A web version is accessible at https://mmonot.eu/COV2HTML/ . This website is free and open to users without any login requirement.

  3. Terrain Measurement with SAR/InSAR

    Science.gov (United States)

    Li, Deren; Liao, Mingsheng; Balz, Timo; Zhang, Lu; Yang, Tianliang

    2016-08-01

    Terrain measurement and surface motion estimation are the most important applications for commercial and scientific SAR missions. In Dragon-3, we worked on these applications, especially regarding DEM generation, surface motion estimation with SAR time- series for urban subsidence monitoring and landslide motion estimation, as well as developing tomographic SAR processing methods in urban areas.

  4. Severe acute respiratory syndrome: 'SARS' or 'not SARS'.

    Science.gov (United States)

    Li, A M; Hon, K L E; Cheng, W T; Ng, P C; Chan, F Y; Li, C K; Leung, T F; Fok, T F

    2004-01-01

    Accurate clinical diagnosis of severe acute respiratory syndrome (SARS) based on the current World Health Organization definition is difficult and at times impossible at the early stage of the disease. Both false positive and false negative cases are commonly encountered and this could have far-reaching detrimental effects on the patients, their family and the clinicians alike. Contact history is particularly important in diagnosing SARS in children as their presenting features are often non-specific. The difficulty in making a correct diagnosis is further compounded by the lack of a sensitive rapid diagnostic test. Serology is not particularly helpful in the initial triaging of patients as it takes at least 3 weeks to become positive. Co-infection and other treatable conditions should not be missed and conventional antibiotics should remain as part of the first-line treatment regimen. We report five cases to illustrate the difficulties and dilemmas faced by clinicians in diagnosing SARS in children.

  5. Impact of the regulatory loci agr, sarA and sae of Staphylococcus aureus on the induction of alpha-toxin during device-related infection resolved by direct quantitative transcript analysis.

    Science.gov (United States)

    Goerke, C; Fluckiger, U; Steinhuber, A; Zimmerli, W; Wolz, C

    2001-06-01

    The cytotoxic alpha-toxin (encoded by hla) of Staphylococcus aureus is regulated by three loci, agr, sarA and sae, in vitro. Here, we assess the regulation of hla in a guinea pig model of device-related infection by quantifying RNAIII (the effector molecule of agr) and hla directly in exudates accumulating in infected devices without subculturing of the bacteria. LightCycler reverse transcription-polymerase chain reaction (RT-PCR) was used to quantify the transcripts. Strains RN6390 and Newman expressed considerably smaller amounts of RNAIII in the guinea pig than during in vitro growth. The residual RNAIII expression decreased during the course of infection and was negatively correlated with bacterial densities. As with RNAIII, the highest hla expression was detected in both strains early in infection. Even in strain Newman, a weak hla producer in vitro, a pronounced expression of hla was observed during infection. Likewise, four S. aureus isolates from cystic fibrosis (CF) patients expressed Q1hla despite an inactive agr during device-related infection as in the CF lung. Mutation of agr and sarA in strain Newman and RN6390 had no consequence for hla expression in vivo. In contrast, the mutation in sae resulted in severe downregulation of hla in vitro as well as in vivo. In conclusion, S. aureus seems to be provided with regulatory circuits different from those characterized in vitro to ensure alpha-toxin synthesis during infections.

  6. CovR and VicRK regulate cell surface biogenesis genes required for biofilm formation in Streptococcus mutans.

    Directory of Open Access Journals (Sweden)

    Rafael N Stipp

    Full Text Available The two-component system VicRK and the orphan regulator CovR of Streptococcus mutans co-regulate a group of virulence genes associated with the synthesis of and interaction with extracellular polysaccharides of the biofilm matrix. Knockout mutants of vicK and covR display abnormal cell division and morphology phenotypes, although the gene function defects involved are as yet unknown. Using transcriptomic comparisons between parent strain UA159 with vicK (UAvic or covR (UAcov deletion mutants together with electrophoretic motility shift assays (EMSA, we identified genes directly regulated by both VicR and CovR with putative functions in cell wall/surface biogenesis, including gbpB, wapE, smaA, SMU.2146c, and lysM. Deletion mutants of genes regulated by VicR and CovR (wapE, lysM, smaA, or regulated only by VicR (SMU.2146c or CovR (epsC promoted significant alterations in biofilm initiation, including increased fragility, defects in microcolony formation, and atypical cell morphology and/or chaining. Significant reductions in mureinolytic activity and/or increases in DNA release during growth were observed in knockout mutants of smaA, wapE, lysM, SMU.2146c and epsC, implying roles in cell wall biogenesis. WapE and lysM mutations also affected cell hydrophobicity and sensitivity to osmotic or oxidative stress. Finally, vicR, covR and VicRK/CovR-targets (gbpB, wapE, smaA, SMU.2146c, lysM, epsC are up-regulated in UA159 during biofilm initiation, in a sucrose-dependent manner. These data support a model in which VicRK and CovR coordinate cell division and surface biogenesis with the extracellular synthesis of polysaccharides, a process apparently required for formation of structurally stable biofilms in the presence of sucrose.

  7. PepO, a CovRS-controlled endopeptidase, disrupts Streptococcus pyogenes quorum sensing.

    Science.gov (United States)

    Wilkening, Reid V; Chang, Jennifer C; Federle, Michael J

    2016-01-01

    Group A Streptococcus (GAS, Streptococcus pyogenes) is a human-restricted pathogen with a capacity to both colonize asymptomatically and cause illnesses ranging from pharyngitis to necrotizing fasciitis. An understanding of how and when GAS switches between genetic programs governing these different lifestyles has remained an enduring mystery and likely requires carefully tuned environmental sensors to activate and silence genetic schemes when appropriate. Herein, we describe the relationship between the Control of Virulence (CovRS, CsrRS) two-component system and the Rgg2/3 quorum-sensing pathway. We demonstrate that responses of CovRS to the stress signals Mg(2+) and a fragment of the antimicrobial peptide LL-37 result in modulated activity of pheromone signaling of the Rgg2/3 pathway through a means of proteolysis of SHP peptide pheromones. This degradation is mediated by the cytoplasmic endopeptidase PepO, which is the first identified enzymatic silencer of an RRNPP-type quorum-sensing pathway. These results suggest that under conditions in which the virulence potential of GAS is elevated (i.e. enhanced virulence gene expression), cellular responses mediated by the Rgg2/3 pathway are abrogated and allow individuals to escape from group behavior. These results also indicate that Rgg2/3 signaling is instead functional during non-virulent GAS lifestyles.

  8. SARS: systematic review of treatment effects.

    Directory of Open Access Journals (Sweden)

    Lauren J Stockman

    2006-09-01

    Full Text Available BACKGROUND: The SARS outbreak of 2002-2003 presented clinicians with a new, life-threatening disease for which they had no experience in treating and no research on the effectiveness of treatment options. The World Health Organization (WHO expert panel on SARS treatment requested a systematic review and comprehensive summary of treatments used for SARS-infected patients in order to guide future treatment and identify priorities for research. METHODS AND FINDINGS: In response to the WHO request we conducted a systematic review of the published literature on ribavirin, corticosteroids, lopinavir and ritonavir (LPV/r, type I interferon (IFN, intravenous immunoglobulin (IVIG, and SARS convalescent plasma from both in vitro studies and in SARS patients. We also searched for clinical trial evidence of treatment for acute respiratory distress syndrome. Sources of data were the literature databases MEDLINE, EMBASE, BIOSIS, and the Cochrane Central Register of Controlled Trials (CENTRAL up to February 2005. Data from publications were extracted and evidence within studies was classified using predefined criteria. In total, 54 SARS treatment studies, 15 in vitro studies, and three acute respiratory distress syndrome studies met our inclusion criteria. Within in vitro studies, ribavirin, lopinavir, and type I IFN showed inhibition of SARS-CoV in tissue culture. In SARS-infected patient reports on ribavirin, 26 studies were classified as inconclusive, and four showed possible harm. Seven studies of convalescent plasma or IVIG, three of IFN type I, and two of LPV/r were inconclusive. In 29 studies of steroid use, 25 were inconclusive and four were classified as causing possible harm. CONCLUSIONS: Despite an extensive literature reporting on SARS treatments, it was not possible to determine whether treatments benefited patients during the SARS outbreak. Some may have been harmful. Clinical trials should be designed to validate a standard protocol for dosage

  9. Modal parameter identification of flexible spacecraft using the covariance-driven stochastic subspace identification (SSI-COV) method

    Science.gov (United States)

    Xie, Yong; Liu, Pan; Cai, Guo-Ping

    2016-08-01

    In this paper, the on-orbit identification of modal parameters for a spacecraft is investigated. Firstly, the coupled dynamic equation of the system is established with the Lagrange method and the stochastic state-space model of the system is obtained. Then, the covariance-driven stochastic subspace identification (SSI-COV) algorithm is adopted to identify the modal parameters of the system. In this algorithm, it just needs the covariance of output data of the system under ambient excitation to construct a Toeplitz matrix, thus the system matrices are obtained by the singular value decomposition on the Toeplitz matrix and the modal parameters of the system can be found from the system matrices. Finally, numerical simulations are carried out to demonstrate the validity of the SSI-COV algorithm. Simulation results indicate that the SSI-COV algorithm is effective in identifying the modal parameters of the spacecraft only using the output data of the system under ambient excitation.

  10. Averaged cov-driven subspace identification for modal analysis of a modified troposkien blade with displacement measurement

    DEFF Research Database (Denmark)

    Najafi, Nadia; Panah, Mohammad Esmail Aryaee; Schmidt Paulsen, Uwe

    2015-01-01

    in the analysis are very short because of limitations in the image acquisition system. Short time series are not fully qualified for OMA and analyzing the data needs a proper method. Covariance driven Stochastic Subspace Identification method (SSI-cov) has been used for short time series like earthquakes....... In the SSI-cov method, a block Toeplitz matrix is formed which contains output correlation functions. 10 displacement time series have been recorded with 187 Hz sampling rate, and about 3 time series were chosen to be analyzed. The block Toeplitz matrix of 3 time series are averaged out and the procedure how...

  11. Modelling strategies for controlling SARS outbreaks.

    Science.gov (United States)

    Gumel, Abba B.; Ruan, Shigui; Day, Troy; Watmough, James; Brauer, Fred; van den Driessche, P.; Gabrielson, Dave; Bowman, Chris; Alexander, Murray E.; Ardal, Sten; Wu, Jianhong; Sahai, Beni M.

    2004-01-01

    Severe acute respiratory syndrome (SARS), a new, highly contagious, viral disease, emerged in China late in 2002 and quickly spread to 32 countries and regions causing in excess of 774 deaths and 8098 infections worldwide. In the absence of a rapid diagnostic test, therapy or vaccine, isolation of individuals diagnosed with SARS and quarantine of individuals feared exposed to SARS virus were used to control the spread of infection. We examine mathematically the impact of isolation and quarantine on the control of SARS during the outbreaks in Toronto, Hong Kong, Singapore and Beijing using a deterministic model that closely mimics the data for cumulative infected cases and SARS-related deaths in the first three regions but not in Beijing until mid-April, when China started to report data more accurately. The results reveal that achieving a reduction in the contact rate between susceptible and diseased individuals by isolating the latter is a critically important strategy that can control SARS outbreaks with or without quarantine. An optimal isolation programme entails timely implementation under stringent hygienic precautions defined by a critical threshold value. Values below this threshold lead to control, but those above are associated with the incidence of new community outbreaks or nosocomial infections, a known cause for the spread of SARS in each region. Allocation of resources to implement optimal isolation is more effective than to implement sub-optimal isolation and quarantine together. A community-wide eradication of SARS is feasible if optimal isolation is combined with a highly effective screening programme at the points of entry. PMID:15539347

  12. Citizens’ Health Information Behaviors During SARS Spread Periods in Taiwan

    Directory of Open Access Journals (Sweden)

    Nei-Ching Yeh

    2003-09-01

    Full Text Available The purpose of this study is to investigate the information behaviors of citizens during the periods of SARS spreading in Taiwan. This study is exploratory in nature, and the naturalistic inquiry approach was applied. Sixteen persons, aged from 20 to 62 years old, were interviewed in order to understand their primary information channels of obtaining SARS information, the characteristics of information communication, the methods of infection, the attitudes toward SARS news, and the influences of SARS to life. The findings show that most participants obtained SARS information from televisions. SARS became the major topic of chatting between people, but telephone communication replaced face to face communication. Part of interviewers applied folk medicine to guard against SARS. Participant dissatisfied that governments did not announce much more authoritative information. The results also found participants’ information sharing and information avoidance behaviors.[Article content in Chinese

  13. Stochastic dynamic model of SARS spreading

    Institute of Scientific and Technical Information of China (English)

    SHI Yaolin

    2003-01-01

    Based upon the simulation of the stochastic process of infection, onset and spreading of each SARS patient, a system dynamic model of SRAS spreading is constructed. Data from Vietnam is taken as an example for Monte Carlo test. The preliminary results indicate that the time-dependent infection rate is the most important control factor for SARS spreading. The model can be applied to prediction of the course with fluctuations of the epidemics, if the previous history of the epidemics and the future infection rate under control measures are known.

  14. Unconventional magnetic phase separation in γ -CoV2O6

    Science.gov (United States)

    Shen, L.; Jellyman, E.; Forgan, E. M.; Blackburn, E.; Laver, M.; Canévet, E.; Schefer, J.; He, Z.; Itoh, M.

    2017-08-01

    We have explored the magnetism in the nongeometrically frustrated spin-chain system γ -CoV2O6 which possesses a complex magnetic exchange network. Our neutron diffraction patterns at low temperatures (T ≤TN=6.6 K) are best described by a model in which two magnetic phases coexist in a volume ratio 65(1) : 35(1), with each phase consisting of a single spin modulation. This model fits previous studies and our observations better than the model proposed by Lenertz et al. [J. Phys. Chem. C 118, 13981 (2014), 10.1021/jp503389c], which consisted of one phase with two spin modulations. By decreasing the temperature from TN, the minority phase of our model undergoes an incommensurate-commensurate lock-in transition at T*=5.6 K. Based on these results, we propose that phase separation is an alternative approach for degeneracy-lifting in frustrated magnets.

  15. Elastic Anomalies in Orbital-Degenerate Frustrated Spinel CoV2O4

    Science.gov (United States)

    Watanabe, Tadataka; Yamada, Shogo; Koborinai, Rui; Katsufuji, Takuro

    Ultrasound velocity measurements were performed on a single crystal of the orbital-degenerate frustrated spinel CoV2O4 in all the symmetrically-independent elastic moduli of the cubic crystal. The measurements of temperature dependence of the elastic moduli observed discontinuous elastic anomalies due to a ferrimagnetic transition at TC = 165 K and another phase transition at T* = 50 K. Additionally, the measurements observed anomalous temperature dependence of the elastic moduli, specifically, non-monotonic temperature dependence in the magnetically-ordered phase below TC, and magnetic-field-sensitive elastic softening with decreasing temperature in the paramagnetic phase above TC. These anomalous temperature variations below and above TC should be driven by the coupling of lattice to magnetic excitations.

  16. Structural transition and orbital glass physics in near-itinerant CoV2O4

    Science.gov (United States)

    Reig-i-Plessis, D.; Casavant, D.; Garlea, V. O.; Aczel, A. A.; Feygenson, M.; Neuefeind, J.; Zhou, H. D.; Nagler, S. E.; MacDougall, G. J.

    2016-01-01

    The ferrimagnetic spinel CoV2O4 has been a topic of intense recent interest, both as a frustrated insulator with unquenched orbital degeneracy and as a near-itinerant magnet which can be driven metallic with moderate applied pressure. Here, we report on our recent neutron diffraction and inelastic scattering measurements on powders with minimal cation site disorder. Our main new result is the identification of a weak (Δ/a a ˜10-4 ), first order structural phase transition at T*=90 K, the same temperature where spin canting was seen in recent single crystal measurements. This transition is characterized by a short-range distortion of oxygen octahedral positions, and inelastic data further establish a weak Δ ˜1.25 meV spin gap at low temperature. Together, these findings provide strong support for the local orbital picture and the existence of an orbital glass state at temperatures below T*.

  17. covR Mediated Antibiofilm Activity of 3-Furancarboxaldehyde Increases the Virulence of Group A Streptococcus.

    Directory of Open Access Journals (Sweden)

    Ganapathy Ashwinkumar Subramenium

    Full Text Available Group A streptococcus (GAS, Streptococcus pyogenes, a multi-virulent, exclusive human pathogen responsible for various invasive and non-invasive diseases possesses biofilm forming phenomenon as one of its pathogenic armaments. Recently, antibiofilm agents have gained prime importance, since inhibiting the biofilm formation is expected to reduce development of antibiotic resistance and increase their susceptibility to the host immune cells.The current study demonstrates the antibiofilm activity of 3Furancarboxaldehyde (3FCA, a floral honey derived compound, against GAS biofilm, which was divulged using crystal violet assay, light microscopy, and confocal laser scanning microscopy. The report is extended to study its effect on various aspects of GAS (morphology, virulence, aggregation at its minimal biofilm inhibitory concentration (132μg/ml. 3FCA was found to alter the growth pattern of GAS in solid and liquid medium and increased the rate of auto-aggregation. Electron microscopy unveiled the increase in extra polymeric substances around cell. Gene expression studies showed down-regulation of covR gene, which is speculated to be the prime target for the antibiofilm activity. Increased hyaluronic acid production and down regulation of srtB gene is attributed to the enhanced rate of auto-aggregation. The virulence genes (srv, mga, luxS and hasA were also found to be over expressed, which was manifested with the increased susceptibility of the model organism Caenorhabditis elegans to 3FCA treated GAS. The toxicity of 3FCA was ruled out with no adverse effect on C. elegans.Though 3FCA possess antibiofilm activity against GAS, it was also found to increase the virulence of GAS. This study demonstrates that, covR mediated antibiofilm activity may increase the virulence of GAS. This also emphasizes the importance to analyse the acclimatization response and virulence of the pathogen in the presence of antibiofilm compounds prior to their clinical trials.

  18. Study of magnetic and magnetocaloric properties of monoclinic and triclinic spin chain CoV2O6

    Science.gov (United States)

    Nandi, Moumita; Mandal, Prabhat

    We have investigated magnetic and magnetocaloric properties of both monoclinic and triclinic phases of CoV2O6 from magnetization and heat capacity measurements. Conventional and inverse magnetocaloric effects have been observed in both phases of CoV2O6. For a field change from 0 to 7 T, maximum values of magnetic entropy change and adiabatic temperature change reach 11.8 J kg-1 K-1 and 9.5 K respectively for monoclinic CoV2O6 while the corresponding values reach 12.1 J kg-1 K-1 and 13.1 K for triclinic CoVO6. Particularly for triclinic CoVO6, the magnetocaloric parameters are quite large in low or moderate field range. Apart from this, we have constructed magnetic phase diagram of monoclinic CoV2O6 where field-induced complex magnetic phases appear below a certain critical temperature 6 K when external magnetic field is applied along crystallographic easy axis.

  19. The outbreak pattern of the SARS cases in Asia

    Institute of Scientific and Technical Information of China (English)

    ZHANG Zhibin; SHENG Chengfa; MA Zufei; LI Dianmo

    2004-01-01

    The severe acute respiratory syndrome (SARS) caused tremendous damage to many Asia countries, especially China. The transmission process and outbreak pattern of SARS is still not well understood. This study aims to find a simple model to describe the outbreak pattern of SARS cases by using SARS case data commonly released by governments. The outbreak pattern of cumulative SARS cases is expected to be a logistic type because the infection will be slowed down due to the increasing control effort by people and/or due to depletion of susceptible individuals. The increase rate of SARS cases is expected to decrease with the cumulative SARS cases, as described by the traditional logistical model, which is widely used in population dynamic studies. The instantaneous rate of increases were significantly and negatively correlated with the cumulative SARS cases in mainland of China (including Beijing, Hebei, Tianjin, Shanxi, the Autonomous Region of Inner Mongolia) and Singapore. The basic reproduction number R0 in Asia ranged from 2.0 to 5.6 (except for Taiwan, China). The R0 of Hebei and Tianjinwere much higher than that of Singapore, Hongkong, Beijing, Shanxi, Inner Mongolia, indicating SARS virus might have originated differently or new mutations occurred during transmission. We demonstrated that the outbreaks of SARS in many regions of Asia were well described by the logistic model, and the control measures implemented by governments are effective. The maximum instantaneous rate of increase, basic reproductive number, and maximum cumulative SARS cases were also calculated by using the logistic model.

  20. Could the coefficient of variation (COV) of the corneal endothelium be overestimated when a centre-dot method is used?

    Science.gov (United States)

    Doughty, Michael J

    2008-01-01

    Little has been published on the reliability of estimates of the coefficient of variation (COV) in cell area for human corneal endothelia. The present study compares two methods. A non-contact specular micrograph (Topcon SP-2000P) was obtained from the central region of the corneal endothelium of 20 healthy myopic white European subjects, aged from 32 to 53 years, half of whom were successful long-term soft contact lens wearers. The captured image file was either assessed using a machine-based algorithm, in which 25 cells in the middle of the image were marked and their areas reported (designated as 'centre-dot' method) or by a manual method, by which all the cells in the image were outlined on very high magnification prints of the endothelia and the cell areas measured by a manual digitiser in stream mode. The average cell area was used to calculate the endothelial cell density (ECD), while the COV was calculated from the standard deviation (SD) of the cell area measures. Identical mean cell area values were found (392 microm(2)) with the two methods, a marginally higher ECD estimate (2,594 versus 2,569) with the centre-dot method (p = NS) but a much higher COV with the centre-dot method (43.8 versus 29.0 per cent). This highly statistically significant difference in COV (p definition of a single large cell domain on any individual image. A centre-dot method can be reliably used to generate useful data on cell area and ECD but it should be used cautiously for estimates of polymegethism (COV).

  1. Possible SARS coronavirus transmission during cardiopulmonary resuscitation.

    Science.gov (United States)

    Christian, Michael D; Loutfy, Mona; McDonald, L Clifford; Martinez, Kennth F; Ofner, Mariana; Wong, Tom; Wallington, Tamara; Gold, Wayne L; Mederski, Barbara; Green, Karen; Low, Donald E

    2004-02-01

    Infection of healthcare workers with the severe acute respiratory syndrome-associated coronavirus (SARS-CoV) is thought to occur primarily by either contact or large respiratory droplet transmission. However, infrequent healthcare worker infections occurred despite the use of contact and droplet precautions, particularly during certain aerosol-generating medical procedures. We investigated a possible cluster of SARS-CoV infections in healthcare workers who used contact and droplet precautions during attempted cardiopulmonary resuscitation of a SARS patient. Unlike previously reported instances of transmission during aerosol-generating procedures, the index case-patient was unresponsive, and the intubation procedure was performed quickly and without difficulty. However, before intubation, the patient was ventilated with a bag-valve-mask that may have contributed to aerosolization of SARS-CoV. On the basis of the results of this investigation and previous reports of SARS transmission during aerosol-generating procedures, a systematic approach to the problem is outlined, including the use of the following: 1) administrative controls, 2) environmental engineering controls, 3) personal protective equipment, and 4) quality control.

  2. Modal parameter identification of flexible spacecraft using the covariance-driven stochastic subspace identification (SSI-COV) method

    Institute of Scientific and Technical Information of China (English)

    Yong Xie; Pan Liu; Guo-Ping Cai

    2016-01-01

    In this paper, the on-orbit identification of modal parameters for a spacecraft is investigated. Firstly, the cou-pled dynamic equation of the system is established with the Lagrange method and the stochastic state-space model of the system is obtained. Then, the covariance-driven stochas-tic subspace identification (SSI-COV) algorithm is adopted to identify the modal parameters of the system. In this algo-rithm, it just needs the covariance of output data of the system under ambient excitation to construct a Toeplitz matrix, thus the system matrices are obtained by the singular value decom-position on the Toeplitz matrix and the modal parameters of the system can be found from the system matrices. Finally, numerical simulations are carried out to demonstrate the validity of the SSI-COV algorithm. Simulation results indi-cate that the SSI-COV algorithm is effective in identifying the modal parameters of the spacecraft only using the output data of the system under ambient excitation.

  3. The Staphylococcus aureus protein-coding gene gdpS modulates sarS expression via mRNA-mRNA interaction.

    Science.gov (United States)

    Chen, Chuan; Zhang, Xu; Shang, Fei; Sun, Haipeng; Sun, Baolin; Xue, Ting

    2015-08-01

    Staphylococcus aureus is an important Gram-positive pathogen responsible for numerous diseases ranging from localized skin infections to life-threatening systemic infections. The virulence of S. aureus is essentially determined by a wide spectrum of factors, including cell wall-associated proteins and secreted toxins that are precisely controlled in response to environmental changes. GGDEF domain protein from Staphylococcus (GdpS) is the only conserved staphylococcal GGDEF domain protein that is involved not in c-di-GMP synthesis but in the virulence regulation of S. aureus NCTC8325. Our previous study showed that the inactivation of gdpS generates an extensive change of virulence factors together with, in particular, a major Spa (protein A) surface protein. As reported, sarS is a direct positive regulator of spa. The decreased transcript levels of sarS in the gdpS mutant compared with the parental NCTC8325 strain suggest that gdpS affects spa through interaction with sarS. In this study, site mutation and complementary experiments showed that the translation product of gdpS was not involved in the regulation of transcript levels of sarS. We found that gdpS functioned through direct RNA-RNA base pairing with the 5' untranslated region (5'UTR) of sarS mRNA and that a putative 18-nucleotide region played a significant role in the regulatory process. Furthermore, the mRNA half-life analysis of sarS in the gdpS mutant showed that gdpS positively regulates the mRNA levels of sarS by contributing to the stabilization of sarS mRNA, suggesting that gdpS mRNA may regulate spa expression in an RNA-dependent pathway.

  4. [Prokaryotic expression of S2 extracellular domain of SARS coronavirus spike protein and its fusion with Hela cell membrane].

    Science.gov (United States)

    Liu, Yun; Liu, Ai-Hua; Deng, Peng; Wu, Xiang-Ling; Li, Tao; Liu, Ya-Wei; Xu, Jia; Jiang, Yong

    2009-03-01

    To construct the expression plasmid of S2 extracellular domain (S2ED) of SARS-coronavirus (SARS- Cov) spike protein (S protein) and enhanced green fluorescent protein (EGFP) to obtain the fusion protein expressed in prokaryotic cells. S2ED based on bioinformatics prediction and EGFP sequence were amplified by PCR and inserted into pET-14b plasmid. The recombinant protein His-S2ED-EGFP was expressed in E. coli by IPTG induction. After purification by Ni-NTA agarose beads, the soluble fractions of the fusion protein were collected and identified by SDS-PAGE and Western blotting. The fusion of S2ED with Hela cell membranes was observed with fluorescent microscope. The pET-14b-S2ED-EGFP plasmid was correctly constructed and highly expressed in BL21 (DE3). When incubated with Hela cells, the purified protein could not internalize through membrane fusion. The expression plasmid containing S2ED of SARS-Cov S protein and EGFP sequence is constructed successfully. Although the recombinant protein obtained has not shown the expected fusion effect with Hela cell membrane, this work may enrich the understanding of the process of membrane fusion mediated by S2 protein and lay the foundation for future study of targeting cell transport system based on cell-specific binding peptide.

  5. Development of a dose-response model for SARS coronavirus.

    Science.gov (United States)

    Watanabe, Toru; Bartrand, Timothy A; Weir, Mark H; Omura, Tatsuo; Haas, Charles N

    2010-07-01

    In order to develop a dose-response model for SARS coronavirus (SARS-CoV), the pooled data sets for infection of transgenic mice susceptible to SARS-CoV and infection of mice with murine hepatitis virus strain 1, which may be a clinically relevant model of SARS, were fit to beta-Poisson and exponential models with the maximum likelihood method. The exponential model (k= 4.1 x l0(2)) could describe the dose-response relationship of the pooled data sets. The beta-Poisson model did not provide a statistically significant improvement in fit. With the exponential model, the infectivity of SARS-CoV was calculated and compared with those of other coronaviruses. The does of SARS-CoV corresponding to 10% and 50% responses (illness) were estimated at 43 and 280 PFU, respectively. Its estimated infectivity was comparable to that of HCoV-229E, known as an agent of human common cold, and also similar to those of some animal coronaviruses belonging to the same genetic group. Moreover, the exponential model was applied to the analysis of the epidemiological data of SARS outbreak that occurred at an apartment complex in Hong Kong in 2003. The estimated dose of SARS-CoV for apartment residents during the outbreak, which was back-calculated from the reported number of cases, ranged from 16 to 160 PFU/person, depending on the floor. The exponential model developed here is the sole dose-response model for SARS-CoV at the present and would enable us to understand the possibility for reemergence of SARS.

  6. Peptide Mimicrying Between SARS Coronavirus Spike Protein and Human Proteins Reacts with SARS Patient Serum

    Directory of Open Access Journals (Sweden)

    K.-Y. Hwa

    2008-01-01

    Full Text Available Molecular mimicry, defined as similar structures shared by molecules from dissimilar genes or proteins, is a general strategy used by pathogens to infect host cells. Severe acute respiratory syndrome (SARS is a new human respiratory infectious disease caused by SARS coronavirus (SARS-CoV. The spike (S protein of SARS-CoV plays an important role in the virus entry into a cell. In this study, eleven synthetic peptides from the S protein were selected based on its sequence homology with human proteins. Two of the peptides D07 (residues 927–937 and D08 (residues 942–951 were recognized by the sera of SARS patients. Murine hyperimmune sera against these peptides bound to proteins of human lung epithelial cells A549. Another peptide D10 (residues 490–502 stimulated A549 to proliferate and secrete IL-8. The present results suggest that the selected S protein regions, which share sequence homology with human proteins, may play important roles in SARS-CoV infection.

  7. Health Communication during SARS

    Science.gov (United States)

    Navin, Ava W.; Steele, Stefanie F.; Weld, Leisa H.; Kozarsky, Phyllis E.

    2004-01-01

    During the severe acute respiratory syndrome (SARS) outbreak, electronic media made it possible to disseminate prevention messages rapidly. The Centers for Disease Control and Prevention’s Travelers’ Health Web site was frequently visited in the first half of 2003; more than 2.6 million visits were made to travel alerts, advisories, and other SARS-related documents. PMID:15030717

  8. SAR: Stroke Authorship Recognition

    KAUST Repository

    Shaheen, Sara

    2015-10-15

    Are simple strokes unique to the artist or designer who renders them? If so, can this idea be used to identify authorship or to classify artistic drawings? Also, could training methods be devised to develop particular styles? To answer these questions, we propose the Stroke Authorship Recognition (SAR) approach, a novel method that distinguishes the authorship of 2D digitized drawings. SAR converts a drawing into a histogram of stroke attributes that is discriminative of authorship. We provide extensive classification experiments on a large variety of data sets, which validate SAR\\'s ability to distinguish unique authorship of artists and designers. We also demonstrate the usefulness of SAR in several applications including the detection of fraudulent sketches, the training and monitoring of artists in learning a particular new style and the first quantitative way to measure the quality of automatic sketch synthesis tools. © 2015 The Eurographics Association and John Wiley & Sons Ltd.

  9. Identification of myricetin and scutellarein as novel chemical inhibitors of the SARS coronavirus helicase, nsP13.

    Science.gov (United States)

    Yu, Mi-Sun; Lee, June; Lee, Jin Moo; Kim, Younggyu; Chin, Young-Won; Jee, Jun-Goo; Keum, Young-Sam; Jeong, Yong-Joo

    2012-06-15

    Severe acute respiratory syndrome (SARS) is an infectious disease with a strong potential for transmission upon close personal contact and is caused by the SARS-coronavirus (CoV). However, there are no natural or synthetic compounds currently available that can inhibit SARS-CoV. We examined the inhibitory effects of 64 purified natural compounds against the activity of SARS helicase, nsP13, and the hepatitis C virus (HCV) helicase, NS3h, by conducting fluorescence resonance energy transfer (FRET)-based double-strand (ds) DNA unwinding assay or by using a colorimetry-based ATP hydrolysis assay. While none of the compounds, examined in our study inhibited the DNA unwinding activity or ATPase activity of human HCV helicase protein, we found that myricetin and scutellarein potently inhibit the SARS-CoV helicase protein in vitro by affecting the ATPase activity, but not the unwinding activity, nsP13. In addition, we observed that myricetin and scutellarein did not exhibit cytotoxicity against normal breast epithelial MCF10A cells. Our study demonstrates for the first time that selected naturally-occurring flavonoids, including myricetin and scultellarein might serve as SARS-CoV chemical inhibitors. Copyright © 2012 Elsevier Ltd. All rights reserved.

  10. Fighting SARS in grand collaboration: Our strategies

    Institute of Scientific and Technical Information of China (English)

    钟南山

    2003-01-01

    @@ The war without gunsmoke against severe acute respiratory syndrome(SARS), a type of communicable atypical pneumonia (AP), is now outspreading throughout China and many other countries in the world. So far, the disease has swept through nearly 30 countries and regions. Globally, more than 7,000 people have been infected, with a total of over 550 deaths. More than 5,000 people in mainland of China have been affected and approximately 200 have died. In some areas, the current situation remains at large. It is estimated that SARS has caused a financial loss of over 30 billion dollars (US) worldwide.

  11. ONERA airborne SAR facilities

    Energy Technology Data Exchange (ETDEWEB)

    Boutry, J.M. [Office National d`Etudes et de Recherches Aerospatiales (ONERA), Chatillon (France)

    1996-11-01

    ONERA has developed and operates the RAMSES experimental SAR on board a TRANSALL C160 aircraft. This system has been designed in order to analyze the effect of various parameters, such as frequency, polarization, incidence, resolution,... in the field of air-to-ground radar applications. These applications include SAR imaging for ground radar applications. These applications include SAR imaging for various purposes such as map-matching for navigation update, battlefield surveillance, reconnaissance, treaty applications... It consists of several radar sections operating over a wide range of frequency bands (L, S, C, X, Ku, Ka, W). 7 figs., 3 tabs.

  12. Chimeric severe acute respiratory syndrome coronavirus (SARS-CoV) S glycoprotein and influenza matrix 1 efficiently form virus-like particles (VLPs) that protect mice against challenge with SARS-CoV

    Science.gov (United States)

    Liu, Ye V.; Massare, Michael J.; Barnard, Dale L.; Kort, Thomas; Nathan, Margret; Wang, Lei; Smith, Gale

    2011-01-01

    SARS-CoV was the cause of the global pandemic in 2003 that infected over 8000 people in 8 months. Vaccines against SARS are still not available. We developed a novel method to produce high levels of a recombinant SARS virus-like particles (VLPs) vaccine containing the SARS spike (S) protein and the influenza M1 protein using the baculovirus insect cell expression system. These chimeric SARS VLPs have a similar size and morphology to the wild type SARS-CoV. We tested the immunogenicity and protective efficacy of purified chimeric SARS VLPs and full length SARS S protein vaccines in a mouse lethal challenge model. The SARS VLP vaccine, containing 0.8 μg of SARS S protein, completely protected mice from death when administered intramuscular (IM) or intranasal (IN) routes in the absence of an adjuvant. Likewise, the SARS VLP vaccine, containing 4 μg of S protein without adjuvant, reduced lung virus titer to below detectable level, protected mice from weight loss, and elicited a high level of neutralizing antibodies against SARS-CoV. Sf9 cell-produced full length purified SARS S protein was also an effective vaccine against SARS-CoV but only when co-administered IM with aluminum hydroxide. SARS-CoV VLPs are highly immunogenic and induce neutralizing antibodies and provide protection against lethal challenge. Sf9 cell-based VLP vaccines are a potential tool to provide protection against novel pandemic agents. PMID:21762752

  13. Raman scattering investigations of the interaction of a COV with pure and acid doped ice particles

    Science.gov (United States)

    Facq, S.; Oancea, A.; Focsa, C.; Chazallon, B.

    2009-04-01

    Ice present in polar stratosphere is as well a common component of the troposphere, particularly in cirrus clouds widespread in tropopause and upper troposphere region. With water droplets, ice constitutes the condensed matter that can interact with atmospheric trace gases via many different trapping processes (co-deposition i.e; incorporation during growing ice conditions, adsorption, freezing etc). The incorporation of trace gases in ice surface/volume can both affect the atmospheric chemistry and the ice structure and reactivity. This can therefore modify the nature and composition of the incorporated species in ice, or in the gas phase. Recently, field measurements have demonstrated the presence of nitric acid in ice particles from cirrus clouds(1,2) (concentration between 0.63 wt% and 2.5 wt %). Moreover, laboratory experiments have shown that the uptake of atmospheric trace gases can be enhanced up to 1 or 2 orders of magnitude in these doped ice particles. Among trace gases capable to interact with atmospheric condensed matter figure volatile organic compounds such as aldehydes, ketones and alcohols (ex: ethanol and methanol). They play an important role in the upper troposphere (3,4) and snowpack chemistry (5) as they can be easily photolysed, producing free radicals and so influence the oxidizing capacity and the ozone-budget of the atmosphere (3,4). The temperature range at which these physico-chemical processes occur extents between ~ 190 K and 273K. Interaction between ice and trace gases are therefore largely dependent on the ice surface properties as well as on the phase formation dynamic (crystalline or not). This study aims to examine and characterize the incorporation of a COV (ex: ethanol), at the surface or in the volume of ice formed by different growth mechanisms (vapour deposition or droplets freezing). Vibrational spectra of water OH and ethanol CH-spectral regions are analysed using confocal micro-Raman spectroscopy at different temperatures

  14. [High-efficiency expression of a receptor-binding domain of SARS-CoV spike protein in tobacco chloroplasts].

    Science.gov (United States)

    Zhong, Xue; Qi, Guangxun; Yang, Jing; Xing, Guojie; Liu, Jianfeng; Yang, Xiangdong

    2014-06-01

    Chloroplast-based expression system is promising for the hyper-expression of plant-derived recombinant therapeutic proteins and vaccines. To verify the feasibility of obtaining high-level expression of the SARS subunit vaccine and to provide a suitable plant-derived vaccine production platform against the severe acute respiratory syndrome coronavirus (SARS-CoV), a 193-amino acid fragment of SARS CoV spike protein receptor-binding domain (RBD), fused with the peptide vector cholera toxin B subunit (CTB), was expressed in tobacco chloroplasts. Codon-optimized CTB-RBD sequence was integrated into the chloroplast genome and homoplasmy was obtained, as confirmed by PCR and Southern blot analysis. Western blot showed expression of the recombinant fusion protein mostly in soluble monomeric form. Quantification of the recombinant fusion protein CTB-RBD was conducted by ELISA analysis from the transplastomic leaves at different developmental stages, attachment positions and time points in a day and the different expression levels of the CTB-RBD were observed with the highest expression of 10.2% total soluble protein obtained from mature transplastomic leaves. Taken together, our results demonstrate the feasibility of highly expressing SARS subunit vaccine RBD, indicating its potential in subsequent development of a plant-derived recombinant subunit vaccine and reagents production for antibody detection in SARS serological tests.

  15. SARS coronavirus pathogenesis: host innate immune responses and viral antagonism of interferon.

    Science.gov (United States)

    Totura, Allison L; Baric, Ralph S

    2012-06-01

    SARS-CoV is a pathogenic coronavirus that emerged from a zoonotic reservoir, leading to global dissemination of the virus. The association SARS-CoV with aberrant cytokine, chemokine, and Interferon Stimulated Gene (ISG) responses in patients provided evidence that SARS-CoV pathogenesis is at least partially controlled by innate immune signaling. Utilizing models for SARS-CoV infection, key components of innate immune signaling pathways have been identified as protective factors against SARS-CoV disease, including STAT1 and MyD88. Gene transcription signatures unique to SARS-CoV disease states have been identified, but host factors that regulate exacerbated disease phenotypes still remain largely undetermined. SARS-CoV encodes several proteins that modulate innate immune signaling through the antagonism of the induction of Interferon and by avoidance of ISG effector functions. Copyright © 2012. Published by Elsevier B.V.

  16. Impact of the Regulators SigB, Rot, SarA and sarS on the Toxic Shock Tst Promoter and TSST-1 Expression in Staphylococcus aureus.

    Directory of Open Access Journals (Sweden)

    Diego O Andrey

    Full Text Available Staphylococcus aureus is an important pathogen manifesting virulence through diverse disease forms, ranging from acute skin infections to life-threatening bacteremia or systemic toxic shock syndromes. In the latter case, the prototypical superantigen is TSST-1 (Toxic Shock Syndrome Toxin 1, encoded by tst(H, and carried on a mobile genetic element that is not present in all S. aureus strains. Transcriptional regulation of tst is only partially understood. In this study, we dissected the role of sarA, sarS (sarH1, RNAIII, rot, and the alternative stress sigma factor sigB (σB. By examining tst promoter regulation predominantly in the context of its native sequence within the SaPI1 pathogenicity island of strain RN4282, we discovered that σB emerged as a particularly important tst regulator. We did not detect a consensus σB site within the tst promoter, and thus the effect of σB is likely indirect. We found that σB strongly repressed the expression of the toxin via at least two distinct regulatory pathways dependent upon sarA and agr. Furthermore rot, a member of SarA family, was shown to repress tst expression when overexpressed, although its deletion had no consistent measurable effect. We could not find any detectable effect of sarS, either by deletion or overexpression, suggesting that this regulator plays a minimal role in TSST-1 expression except when combined with disruption of sarA. Collectively, our results extend our understanding of complex multifactorial regulation of tst, revealing several layers of negative regulation. In addition to environmental stimuli thought to impact TSST-1 production, these findings support a model whereby sporadic mutation in a few key negative regulators can profoundly affect and enhance TSST-1 expression.

  17. Impact of the Regulators SigB, Rot, SarA and sarS on the Toxic Shock Tst Promoter and TSST-1 Expression in Staphylococcus aureus.

    Science.gov (United States)

    Andrey, Diego O; Jousselin, Ambre; Villanueva, Maite; Renzoni, Adriana; Monod, Antoinette; Barras, Christine; Rodriguez, Natalia; Kelley, William L

    2015-01-01

    Staphylococcus aureus is an important pathogen manifesting virulence through diverse disease forms, ranging from acute skin infections to life-threatening bacteremia or systemic toxic shock syndromes. In the latter case, the prototypical superantigen is TSST-1 (Toxic Shock Syndrome Toxin 1), encoded by tst(H), and carried on a mobile genetic element that is not present in all S. aureus strains. Transcriptional regulation of tst is only partially understood. In this study, we dissected the role of sarA, sarS (sarH1), RNAIII, rot, and the alternative stress sigma factor sigB (σB). By examining tst promoter regulation predominantly in the context of its native sequence within the SaPI1 pathogenicity island of strain RN4282, we discovered that σB emerged as a particularly important tst regulator. We did not detect a consensus σB site within the tst promoter, and thus the effect of σB is likely indirect. We found that σB strongly repressed the expression of the toxin via at least two distinct regulatory pathways dependent upon sarA and agr. Furthermore rot, a member of SarA family, was shown to repress tst expression when overexpressed, although its deletion had no consistent measurable effect. We could not find any detectable effect of sarS, either by deletion or overexpression, suggesting that this regulator plays a minimal role in TSST-1 expression except when combined with disruption of sarA. Collectively, our results extend our understanding of complex multifactorial regulation of tst, revealing several layers of negative regulation. In addition to environmental stimuli thought to impact TSST-1 production, these findings support a model whereby sporadic mutation in a few key negative regulators can profoundly affect and enhance TSST-1 expression.

  18. Crop Classification by Polarimetric SAR

    DEFF Research Database (Denmark)

    Skriver, Henning; Svendsen, Morten Thougaard; Nielsen, Flemming;

    1999-01-01

    Polarimetric SAR-data of agricultural fields have been acquired by the Danish polarimetric L- and C-band SAR (EMISAR) during a number of missions at the Danish agricultural test site Foulum during 1995. The data are used to study the classification potential of polarimetric SAR data using...

  19. Staphylococcus aureus sarA regulates inflammation and colonization during central nervous system biofilm formation.

    Directory of Open Access Journals (Sweden)

    Jessica N Snowden

    Full Text Available Infection is a frequent and serious complication following the treatment of hydrocephalus with CSF shunts, with limited therapeutic options because of biofilm formation along the catheter surface. Here we evaluated the possibility that the sarA regulatory locus engenders S. aureus more resistant to immune recognition in the central nervous system (CNS based on its reported ability to regulate biofilm formation. We utilized our established model of CNS catheter-associated infection, similar to CSF shunt infections seen in humans, to compare the kinetics of bacterial titers, cytokine production and inflammatory cell influx elicited by wild type S. aureus versus an isogenic sarA mutant. The sarA mutant was more rapidly cleared from infected catheters compared to its isogenic wild type strain. Consistent with this finding, several pro-inflammatory cytokines and chemokines, including IL-17, CXCL1, and IL-1β were significantly increased in the brain following infection with the sarA mutant versus wild type S. aureus, in agreement with the fact that the sarA mutant displayed impaired biofilm growth and favored a planktonic state. Neutrophil influx into the infected hemisphere was also increased in the animals infected with the sarA mutant compared to wild type bacteria. These changes were not attributable to extracellular protease activity, which is increased in the context of SarA mutation, since similar responses were observed between sarA and a sarA/protease mutant. Overall, these results demonstrate that sarA plays an important role in attenuating the inflammatory response during staphylococcal biofilm infection in the CNS via a mechanism that remains to be determined.

  20. SARS: just another viral acronym?

    Science.gov (United States)

    Broxmeyer, L

    2003-08-01

    Recent observations and experimental evidence have purported that a virus causes SARS, but such viruses have been isolated in only less than half of SARS patients in some studies and virologist Vincent Plummer of Winnipeg's National Microbiology Laboratory found that indeed 1 in 5 perfectly healthy Canadians with a history of recent travel to Asia had the virus. Therefore SARS microbiologic origins remain unclear. Outbreaks of multi-drug resistant (MDR) tuberculosis and the atypical mycobacteria simulate SARS on clinical, radiologic, epidemiologic, and diagnostic laboratory grounds and it is only logical then to include them in the differential to find a definitive cause and cure for SARS.

  1. Bats and SARS

    Centers for Disease Control (CDC) Podcasts

    2006-11-08

    Bats are a natural reservoir for emerging viruses, among them henipaviruses and rabies virus variants. Dr. Nina Marano, Chief, Geographic Medicine and Health Promotion Branch, Division of Global Migration and Quarantine, CDC, explains connection between horseshoe bats and SARS coronavirus transmission.  Created: 11/8/2006 by Emerging Infectious Diseases.   Date Released: 11/17/2006.

  2. Multichannel FMCW SAR

    NARCIS (Netherlands)

    Rossum, W.L. van; Otten, M.P.G.; Dorp, Ph. van

    2012-01-01

    A light weight SAR, suitable for use on short range tactical UAV, has been designed and built. The system consists of a fully digital receive array, and a very compact active transmit antenna. The approximate weight of the complete system is 6 kg, with power consumption below 75 W, depending on the

  3. Residue analysis of a CTL epitope of SARS-CoV spike protein by IFN-gamma production and bioinformatics prediction

    Directory of Open Access Journals (Sweden)

    Huang Jun

    2012-09-01

    Full Text Available Abstract Background Severe acute respiratory syndrome (SARS is an emerging infectious disease caused by the novel coronavirus SARS-CoV. The T cell epitopes of the SARS CoV spike protein are well known, but no systematic evaluation of the functional and structural roles of each residue has been reported for these antigenic epitopes. Analysis of the functional importance of side-chains by mutational study may exaggerate the effect by imposing a structural disturbance or an unusual steric, electrostatic or hydrophobic interaction. Results We demonstrated that N50 could induce significant IFN-gamma response from SARS-CoV S DNA immunized mice splenocytes by the means of ELISA, ELISPOT and FACS. Moreover, S366-374 was predicted to be an optimal epitope by bioinformatics tools: ANN, SMM, ARB and BIMAS, and confirmed by IFN-gamma response induced by a series of S358-374-derived peptides. Furthermore, each of S366-374 was replaced by alanine (A, lysine (K or aspartic acid (D, respectively. ANN was used to estimate the binding affinity of single S366-374 mutants to H-2 Kd. Y367 and L374 were predicated to possess the most important role in peptide binding. Additionally, these one residue mutated peptides were synthesized, and IFN-gamma production induced by G368, V369, A371, T372 and K373 mutated S366-374 were decreased obviously. Conclusions We demonstrated that S366-374 is an optimal H-2 Kd CTL epitope in the SARS CoV S protein. Moreover, Y367, S370, and L374 are anchors in the epitope, while C366, G368, V369, A371, T372, and K373 may directly interact with TCR on the surface of CD8-T cells.

  4. Bistatic SAR: Proof of Concept.

    Energy Technology Data Exchange (ETDEWEB)

    Yocky, David A.; Doren, Neall E.; Bacon, Terry A.; Wahl, Daniel E.; Eichel, Paul H.; Jakowatz, Charles V,; Delaplain, Gilbert G.; Dubbert, Dale F.; Tise, Bertice L.; White, Kyle R.

    2014-10-01

    Typical synthetic aperture RADAR (SAR) imaging employs a co-located RADAR transmitter and receiver. Bistatic SAR imaging separates the transmitter and receiver locations. A bistatic SAR configuration allows for the transmitter and receiver(s) to be in a variety of geometric alignments. Sandia National Laboratories (SNL) / New Mexico proposed the deployment of a ground-based RADAR receiver. This RADAR receiver was coupled with the capability of digitizing and recording the signal collected. SNL proposed the possibility of creating an image of targets the illuminating SAR observes. This document describes the developed hardware, software, bistatic SAR configuration, and its deployment to test the concept of a ground-based bistatic SAR. In the proof-of-concept experiments herein, the RADAR transmitter will be a commercial SAR satellite and the RADAR receiver will be deployed at ground level, observing and capturing RADAR ground/targets illuminated by the satellite system.

  5. Understanding SARS with Wolfram Approach

    Institute of Scientific and Technical Information of China (English)

    Da-WeiLI; Yu-XiPAN; YunDUAN; Zhen-DeHUNG; Ming-QingXU; LinHE

    2004-01-01

    Stepping acquired immunodeficiency syndrome (AIDS), severe acute respiratory syndrome (SARS) as another type of disease has been threatening mankind since late last year. Many scientists worldwide are making great efforts to study the etiology of this disease with different approaches. 13 species of SARS virus have been sequenced. However, most people still largely rely on the traditional methods with some disadvantages. In this work, we used Wolfram approach to study the relationship among SARS viruses and between SARS viruses and other types of viruses, the effect of variations on the whole genome and the advantages in the analysis of SARS based on this novel approach. As a result, the similarities between SARS viruses and other coronaviruses are not really higher than those between SARS viruses and non-coronaviruses.

  6. From SARS coronavirus to novel animal and human coronaviruses.

    Science.gov (United States)

    To, Kelvin K W; Hung, Ivan F N; Chan, Jasper F W; Yuen, Kwok-Yung

    2013-08-01

    In 2003, severe acute respiratory syndrome coronavirus (SARS-CoV) caused one of the most devastating epidemics known to the developed world. There were two important lessons from this epidemic. Firstly, coronaviruses, in addition to influenza viruses, can cause severe and rapidly spreading human infections. Secondly, bats can serve as the origin and natural animal reservoir of deadly human viruses. Since then, researchers around the world, especially those in Asia where SARS-CoV was first identified, have turned their focus to find novel coronaviruses infecting humans, bats, and other animals. Two human coronaviruses, HCoV-HKU1 and HCoV-NL63, were identified shortly after the SARS-CoV epidemic as common causes of human respiratory tract infections. In 2012, a novel human coronavirus, now called Middle East respiratory syndrome coronavirus (MERS-CoV), has emerged in the Middle East to cause fatal human infections in three continents. MERS-CoV human infection is similar to SARS-CoV in having a high fatality rate and the ability to spread from person to person which resulted in secondary cases among close contacts including healthcare workers without travel history to the Middle East. Both viruses also have close relationships with bat coronaviruses. New cases of MERS-CoV infection in humans continue to occur with the origins of the virus still unknown in many cases. A multifaceted approach is necessary to control this evolving MERS-CoV outbreak. Source identification requires detailed epidemiological studies of the infected patients and enhanced surveillance of MERS-CoV or similar coronaviruses in humans and animals. Early diagnosis of infected patients and appropriate infection control measures will limit the spread in hospitals, while social distancing strategies may be necessary to control the outbreak in communities if it remained uncontrolled as in the SARS epidemic.

  7. Response of phytohormones and correlation of SAR signal pathway genes to the different resistance levels of grapevine against Plasmopara viticola infection.

    Science.gov (United States)

    Liu, Shao-Li; Wu, Jiao; Zhang, Pei; Hasi, Gerile; Huang, Yu; Lu, Jiang; Zhang, Ya-Li

    2016-10-01

    Phytohormones play an important role in the process of disease resistance in plants. Here, we investigated which among salicylic acid, jasmonic acid, and abscisic acid performs a key role in plant defense after Plasmopara viticola infection in grapevine. We used grapevines possessing different resistance levels against P. viticola infection to study the relationship between the expression of key genes in the related resistance signaling pathways and the level of resistance. We performed high-performance liquid chromatography-mass spectrometry to estimate the phytohormone contents in grape leaves at different time points after the infection. Furthermore, we performed quantitative analyses of key genes such as EDS1, PAD4, ICS2, PAL, NPR1, TGA1, and PR1 in the systemic acquired resistance pathway by quantitative reverse transcription-polymerase chain reaction. The results showed an increased variation in the SA content, which was maintained at high levels, after P. viticola infection in plant species exhibiting stronger resistance to the pathogen; this finding highlights the importance of SA in plant defense mechanisms. Moreover, EDS1 and PAD4 expression did not show a positive correlation with disease resistance in grape; however, higher expression of other genes that were analyzed was observed in highly resistant grape varieties. Our results provide insights into the role of phytohormone regulation in the induction and maintenance of plant defense response to pathogens.

  8. Evasion by Stealth: Inefficient Immune Activation Underlies Poor T Cell Response and Severe Disease in SARS-CoV-Infected Mice

    NARCIS (Netherlands)

    Zhao, J.; Zhao, J.X.; Rooijen, van N.; Perlman, S.

    2009-01-01

    Severe Acute Respiratory Syndrome caused substantial morbidity and mortality during the 2002-2003 epidemic. Many of the features of the human disease are duplicated in BALB/c mice infected with a mouse-adapted version of the virus (MA15), which develop respiratory disease with high morbidity and mor

  9. Bistatic sAR data processing algorithms

    CERN Document Server

    Qiu, Xiaolan; Hu, Donghui

    2013-01-01

    Synthetic Aperture Radar (SAR) is critical for remote sensing. It works day and night, in good weather or bad. Bistatic SAR is a new kind of SAR system, where the transmitter and receiver are placed on two separate platforms. Bistatic SAR is one of the most important trends in SAR development, as the technology renders SAR more flexible and safer when used in military environments. Imaging is one of the most difficult and important aspects of bistatic SAR data processing. Although traditional SAR signal processing is fully developed, bistatic SAR has a more complex system structure, so sign

  10. Enzymatic activity characterization of SARS coronavirus 3C-like protease by fluorescence resonance energy transfer technique

    Institute of Scientific and Technical Information of China (English)

    Shuai CHEN; Hua-liang JIANG; Li-li CHEN; Hai-bin LUO; Tao SUN; Jing CHEN; Fei YE; Jian-hua CAI; Jing-kang SHEN; Xu SHEN

    2005-01-01

    Aim: To characterize enzymatic activity of severe acute respiratory syndrome(SARS) coronavirus (CoV) 3C-like protease (3CLpro) and its four site-directed mutants. Methods: Based on the fluorescence resonance energy transfer (FRET)principle using 5-[(2'-aminoethyl)-amino] naphthelenesulfonic acid (EDANS) and 4-[[4-(dimethylamino) phenyl] azo] benzoic acid (Dabcyl) as the energy transfer pair, one fluorogenic substrate was designed for the evaluation of SARS-CoV 3CLpro proteolytic activity. Results: The kinetic parameters of the fluorogenic substrate have been determined as Km=404 μmol.L-1, kcat=1.08 min-1, and kcat/Km=2.7 gered activity switches, and site-directed mutagenesis analysis of SARS-CoV 3CLpro revealed that substitutions of His41, Cys145, and His163 resulted in complete loss of enzymatic activity, while replacement of Met162 with Ala caused strongly increased activity. Conclusion: This present work has provided valuable information for understanding the catalytic mechanism of SARS-CoV 3CLpro. This FRET-based assay might supply an ideal approach for the exploration SARSCoV 3CLpro putative inhibitors.

  11. SAR++: A Multi-Channel Scalable and Reconfigurable SAR System

    DEFF Research Database (Denmark)

    Høeg, Flemming; Christensen, Erik Lintz

    2002-01-01

    SAR++ is a technology program aiming at developing know-how and technology needed to design the next generation civilian SAR systems. Technology has reached a state, which allows major parts of the digital subsystem to be built using custom-off-the-shelf (COTS) components. A design goal is to des......SAR++ is a technology program aiming at developing know-how and technology needed to design the next generation civilian SAR systems. Technology has reached a state, which allows major parts of the digital subsystem to be built using custom-off-the-shelf (COTS) components. A design goal...... is to design a modular, scalable and reconfigurable SAR system using such components, in order to ensure maximum flexibility for the users of the actual system and for future system updates. Having these aspects in mind the SAR++ system is presented with focus on the digital subsystem architecture...... and the analog to digital interface....

  12. Síntese de látices com baixa concentração de compostos orgânicos voláteis (COVs: efeito das técnicas de redução dos COVs nas propriedades dos látexes e das tintas

    Directory of Open Access Journals (Sweden)

    Maurício Pinheiro de Oliveira

    2014-08-01

    Full Text Available A redução dos compostos orgânicos voláteis (COVs nos látices produzidos via polimerização em emulsão é uma opção viável, mas em algumas situações pode comprometer a qualidade do látex. Diferentes técnicas de redução da concentração dos monômeros e dos COVs foram estudadas com o objetivo de entender o efeito destas técnicas e da concentração dos COVs nas propriedades de aplicação dos látices e das tintas. Os látices de estireno com acrilato de 2-etil hexila funcionalizados com ácido acrílico e acrilamida foram produzidos via polimerização em emulsão, seguido por remoção química, física e a combinação de ambas as técnicas de redução dos monômeros e dos COVs. Os parâmetros relacionados à técnica de redução dos COVs, ao tipo de iniciador, ao agente de redução e à introdução de nitrogênio saturado com vapor de água foram estudados e correlacionados com as propriedades de aplicação das tintas. A combinação da técnica química com a técnica física foi mais eficiente na redução dos monômeros e dos COVs nos látices. As técnicas utilizadas na redução dos COVs tiveram influência negativa nas propriedades de aplicação dos látices. A resistência à abrasão dos filmes de tinta foi dependente da técnica empregada e da concentração dos COVs.

  13. Novel Polarimetric SAR Interferometry Algorithms Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Polarimetric SAR interferometry (PolInSAR) is a recently developed synthetic aperture radar (SAR) imaging mode that combines the capabilities of radar polarimetry...

  14. Wetland InSAR

    Science.gov (United States)

    Wdowinski, S.; Kim, S.; Amelung, F.; Dixon, T.

    2006-12-01

    Wetlands are transition zones where the flow of water, the nutrient cycling, and the sun energy meet to produce a unique and very productive ecosystem. They provide critical habitat for a wide variety of plant and animal species, including the larval stages of many ocean fish. Wetlands also have a valuable economical importance, as they filter nutrients and pollutants from fresh water used by human and provide aquatic habitats for outdoor recreation, tourism, and fishing. Globally, many such regions are under severe environmental stress, mainly from urban development, pollution, and rising sea level. However, there is increasing recognition of the importance of these habitats, and mitigation and restoration activities have begun in a few regions. A key element in wetlands conservation, management, and restoration involves monitoring its hydrologic system, as the entire ecosystem depends on its water supply. Heretofore, hydrologic monitoring of wetlands are conducted by stage (water level) stations, which provide good temporal resolution, but suffer from poor spatial resolution, as stage station are typically distributed several, or even tens of kilometers, from one another. Wetland application of InSAR provides the needed high spatial resolution hydrological observations, complementing the high temporal resolution terrestrial observations. Although conventional wisdom suggests that interferometry does not work in vegetated areas, several studies have shown that both L- and C-band interferograms with short acquisition intervals (1-105 days) can maintain excellent coherence over wetlands. In this study we explore the usage of InSAR for detecting water level changes in various wetland environments around the world, including the Everglades (south Florida), Louisiana Coast (southern US), Chesapeake Bay (eastern US), Pantanal (Brazil), Okavango Delta (Botswana), and Lena Delta (Siberia). Our main study area is the Everglades wetland (south Florida), which is covered by

  15. The role of epidermal growth factor receptor (EGFR) signaling in SARS coronavirus-induced pulmonary fibrosis.

    Science.gov (United States)

    Venkataraman, Thiagarajan; Frieman, Matthew B

    2017-07-01

    Many survivors of the 2003 outbreak of severe acute respiratory syndrome (SARS) developed residual pulmonary fibrosis with increased severity seen in older patients. Autopsies of patients that died from SARS also showed fibrosis to varying extents. Pulmonary fibrosis can be occasionally seen as a consequence to several respiratory viral infections but is much more common after a SARS coronavirus (SARS-CoV) infection. Given the threat of future outbreaks of severe coronavirus disease, including Middle East respiratory syndrome (MERS), it is important to understand the mechanisms responsible for pulmonary fibrosis, so as to support the development of therapeutic countermeasures and mitigate sequelae of infection. In this article, we summarize pulmonary fibrotic changes observed after a SARS-CoV infection, discuss the extent to which other respiratory viruses induce fibrosis, describe available animal models to study the development of SARS-CoV induced fibrosis and review evidence that pulmonary fibrosis is caused by a hyperactive host response to lung injury mediated by epidermal growth factor receptor (EGFR) signaling. We summarize work from our group and others indicating that inhibiting EGFR signaling may prevent an excessive fibrotic response to SARS-CoV and other respiratory viral infections and propose directions for future research. Copyright © 2017 Elsevier B.V. All rights reserved.

  16. MERS-coronavirus replication induces severe in vitro cytopathology and is strongly inhibited by cyclosporin A or interferon-α treatment

    NARCIS (Netherlands)

    A.H. de Wilde (Adriaan); V.S. Raj (Stalin); D. Oudshoorn (Diede); T.M. Bestebroer (Theo); S. van Nieuwkoop (Stefan); R. Limpens (Ronald); C.C. Posthuma (Clara); Y. van der Meer (Yvonne); M. Bárcena (Montserrat); B.L. Haagmans (Bart); E.J. Snijder (Eric); B.G. van den Hoogen (Bernadette)

    2013-01-01

    textabstractCoronavirus (CoV) infections are commonly associated with respiratory and enteric disease in humans and animals. The 2003 outbreak of severe acute respiratory syndrome (SARS) highlighted the potentially lethal consequences of CoV-induced disease in humans. In 2012, a novel CoV (Middle Ea

  17. Magnetic and magnetocaloric properties of quasi-one-dimensional Ising spin chain CoV2O6

    Science.gov (United States)

    Nandi, M.; Mandal, P.

    2016-04-01

    We have investigated the magnetic and magnetocaloric properties of antiferromagnetic Ising spin chain CoV2O6 by magnetization and heat capacity measurements. Both monoclinic α-CoV2O6 and triclinic γ-CoV2O6 exhibit field-induced metamagnetic transitions from antiferromagnetic to ferromagnetic state via an intermediate ferrimagnetic state with 1/3 magnetization plateau. Due to the field-induced metamagnetic transitions, these systems show large conventional as well as inverse magnetocaloric effects. In α-CoV2O6, we observe field-induced complex magnetic phases and multiple magnetization plateaus below 6 K when the field is applied along c axis. Several critical temperatures and fields have been identified from the temperature and field dependence of magnetization, magnetic entropy change, and heat capacity to construct the H-T phase diagram. As compared to α-CoV2O6, γ-CoV2O6 displays a relatively simple magnetic phase diagram. Due to the large magnetic entropy change and adiabatic temperature change at low or moderate applied magnetic field, γ-CoV2O6 may be considered as a magnetic refrigerant in the low-temperature region below 20 K.

  18. NParCov3: A SAS/IML Macro for Nonparametric Randomization-Based Analysis of Covariance

    Directory of Open Access Journals (Sweden)

    Richard C. Zink

    2012-07-01

    Full Text Available Analysis of covariance serves two important purposes in a randomized clinical trial. First, there is a reduction of variance for the treatment effect which provides more powerful statistical tests and more precise confidence intervals. Second, it provides estimates of the treatment effect which are adjusted for random imbalances of covariates between the treatment groups. The nonparametric analysis of covariance method of Koch, Tangen, Jung, and Amara (1998 defines a very general methodology using weighted least-squares to generate covariate-adjusted treatment effects with minimal assumptions. This methodology is general in its applicability to a variety of outcomes, whether continuous, binary, ordinal, incidence density or time-to-event. Further, its use has been illustrated in many clinical trial settings, such as multi-center, dose-response and non-inferiority trials.NParCov3 is a SAS/IML macro written to conduct the nonparametric randomization-based covariance analyses of Koch et al. (1998. The software can analyze a variety of outcomes and can account for stratification. Data from multiple clinical trials will be used for illustration.

  19. Recovering Seasat SAR Data

    Science.gov (United States)

    Logan, T. A.; Arko, S. A.; Rosen, P. A.

    2013-12-01

    To demonstrate the feasibility of orbital remote sensing for global ocean observations, NASA launched Seasat on June 27th, 1978. Being the first space borne SAR mission, Seasat produced the most detailed SAR images of Earth from space ever seen to that point in time. While much of the data collected in the USA was processed optically, a mere 150 scenes had been digitally processed by March 1980. In fact, only an estimated 3% of Seasat data was ever digitally processed. Thus, for over three decades, the majority of the SAR data from this historic mission has been dormant, virtually unavailable to scientists in the 21st century. Over the last year, researchers at the Alaska Satellite Facility (ASF) Distributed Active Archive Center (DAAC) have processed the Seasat SAR archives into imagery products. A telemetry decoding system was created and the data were filtered into readily processable signal files. Due to nearly 35 years of bit rot, the bit error rate (BER) for the ASF DAAC Seasat archives was on the order of 1 out of 100 to 1 out of 100,000. This extremely high BER initially seemed to make much of the data undecodable - because the minor frame numbers are just 7 bits and no range line numbers exist in the telemetry even the 'simple' tasks of tracking the minor frame number or locating the start of each range line proved difficult. Eventually, using 5 frame numbers in sequence and a handful of heuristics, the data were successfully decoded into full range lines. Concurrently, all metadata were stored into external files. Recovery of this metadata was also problematic, the BER making the information highly suspect and, initially at least, unusable in any sort of automated fashion. Because of the BER, all of the single bit metadata fields proved unreliable. Even fields that should be constant for a data take (e.g. receiving station, day of the year) showed high variability, each requiring a median filter to be usable. The most challenging, however, were the

  20. Analytical SAR-GMTI principles

    Science.gov (United States)

    Soumekh, Mehrdad; Majumder, Uttam K.; Barnes, Christopher; Sobota, David; Minardi, Michael

    2016-05-01

    This paper provides analytical principles to relate the signature of a moving target to parameters in a SAR system. Our objective is to establish analytical tools that could predict the shift and smearing of a moving target in a subaperture SAR image. Hence, a user could identify the system parameters such as the coherent processing interval for a subaperture that is suitable to localize the signature of a moving target for detection, tracking and geolocating the moving target. The paper begins by outlining two well-known SAR data collection methods to detect moving targets. One uses a scanning beam in the azimuth domain with a relatively high PRF to separate the moving targets and the stationary background (clutter); this is also known as Doppler Beam Sharpening. The other scheme uses two receivers along the track to null the clutter and, thus, provide GMTI. We also present results on implementing our SAR-GMTI analytical principles for the anticipated shift and smearing of a moving target in a simulated code. The code would provide a tool for the user to change the SAR system and moving target parameters, and predict the properties of a moving target signature in a subaperture SAR image for a scene that is composed of both stationary and moving targets. Hence, the SAR simulation and imaging code could be used to demonstrate the validity and accuracy of the above analytical principles to predict the properties of a moving target signature in a subaperture SAR image.

  1. Acetylene Black Induced Heterogeneous Growth of Macroporous CoV2O6 Nanosheet for High-Rate Pseudocapacitive Lithium-Ion Battery Anode.

    Science.gov (United States)

    Zhang, Lei; Zhao, Kangning; Luo, Yanzhu; Dong, Yifan; Xu, Wangwang; Yan, Mengyu; Ren, Wenhao; Zhou, Liang; Qu, Longbing; Mai, Liqiang

    2016-03-23

    Metal vanadates suffer from fast capacity fading in lithium-ion batteries especially at a high rate. Pseudocapacitance, which is associated with surface or near-surface redox reactions, can provide fast charge/discharge capacity free from diffusion-controlled intercalation processes and is able to address the above issue. In this work, we report the synthesis of macroporous CoV2O6 nanosheets through a facile one-pot method via acetylene black induced heterogeneous growth. When applied as lithium-ion battery anode, the macroporous CoV2O6 nanosheets show typical features of pseudocapacitive behavior: (1) currents that are mostly linearly dependent on sweep rate and (2) redox peaks whose potentials do not shift significantly with sweep rate. The macroporous CoV2O6 nanosheets display a high reversible capacity of 702 mAh g(-1) at 200 mA g(-1), excellent cyclability with a capacity retention of 89% (against the second cycle) after 500 cycles at 500 mA g(-1), and high rate capability of 453 mAh g(-1) at 5000 mA g(-1). We believe that the introduction of pseudocapacitive properties in lithium battery is a promising direction for developing electrode materials with high-rate capability.

  2. Development of a SARS Coronavirus Vaccine from Recombinant Spike Protein Plus Delta Inulin Adjuvant.

    Science.gov (United States)

    McPherson, Clifton; Chubet, Richard; Holtz, Kathy; Honda-Okubo, Yoshikazu; Barnard, Dale; Cox, Manon; Petrovsky, Nikolai

    2016-01-01

    Given periodic outbreaks of fatal human infections caused by coronaviruses, development of an optimal coronavirus vaccine platform capable of rapid production is an ongoing priority. This chapter describes the use of an insect cell expression system for rapid production of a recombinant vaccine against severe acute respiratory syndrome coronavirus (SARS). Detailed methods are presented for expression, purification, and release testing of SARS recombinant spike protein antigen, followed by adjuvant formulation and animal testing. The methods herein described for rapid development of a highly protective SARS vaccine are equally suited to rapid development of vaccines against other fatal human coronavirus infections, e.g., the MERS coronavirus.

  3. Bistatic SAR: Imagery & Image Products.

    Energy Technology Data Exchange (ETDEWEB)

    Yocky, David A.; Wahl, Daniel E.; Jakowatz, Charles V,

    2014-10-01

    While typical SAR imaging employs a co-located (monostatic) RADAR transmitter and receiver, bistatic SAR imaging separates the transmitter and receiver locations. The transmitter and receiver geometry determines if the scattered signal is back scatter, forward scatter, or side scatter. The monostatic SAR image is backscatter. Therefore, depending on the transmitter/receiver collection geometry, the captured imagery may be quite different that that sensed at the monostatic SAR. This document presents imagery and image products formed from captured signals during the validation stage of the bistatic SAR research. Image quality and image characteristics are discussed first. Then image products such as two-color multi-view (2CMV) and coherent change detection (CCD) are presented.

  4. SAR Altimetry Applications over Water

    CERN Document Server

    Martin-Puig, C; Ruffini, G; Raney, R K; Benveniste, J

    2008-01-01

    The application of Synthetic Aperture Radar (SAR) techniques to classical radar altimetry offers the potential for greatly improved Earth surface mapping. This paper provides an overview of the progress of SAMOSA, Development of SAR Altimetry Studies and Applications over Ocean, Coastal zones and Inland waters, an on-going ESA-funded project. The main objective of SAMOSA is to better quantify the improvement of SAR altimetry over conventional altimetry on water surfaces. More specifically, one of the tasks focuses on the reduction of SAR mode data to pulse-limited altimeter data, and a theoretical modelling to characterize the expected gain between high Pulse Repetition Frequency (PRF) reduced SAR mode data and low PRF classical Low-Resolution Mode (LRM) data. To this end, theoretical modelling using the Cramer-Rao bound (CRB) will be used and the results will be compared to previous theoretical estimates [7], using an analysis akin to that in [8].

  5. The utility of preemptive mass influenza vaccination in controlling a sars outbreak during flu season.

    Science.gov (United States)

    Zeng, Qingling; Khan, Kamran; Wu, Jianhong; Zhu, Huaiping

    2007-10-01

    During flu season, respiratory infections can cause non-specific influenza-like-illnesses (ILIs) in up to one-half of the general population. If a future SARS outbreak were to coincide with flu season, it would become exceptionally difficult to distinguish SARS rapidly and accurately from other ILIs, given the non-specific clinical presentation of SARS and the current lack of a widely available, rapid, diagnostic test. We construct a deterministic compartmental model to examine the potential impact of preemptive mass influenza vaccination on SARS containment during a hypothetical SARS outbreak coinciding with a peak flu season. Our model was developed based upon the events of the 2003 SARS outbreak in Toronto, Canada. The relationship of different vaccination rates for influenza and the corresponding required quarantine rates for individuals who are exposed to SARS was analyzed and simulated under different assumptions. The study revealed that a campaign of mass influenza vaccination prior to the onset of flu season could aid the containment of a future SARS outbreak by decreasing the total number of persons with ILIs presenting to the health-care system, and consequently decreasing nosocomial transmission of SARS in persons under investigation for the disease.

  6. Putative hAPN receptor binding sites in SARS_CoV spike protein

    Institute of Scientific and Technical Information of China (English)

    YUXiao-Jing; LUOCheng; LinJian-Cheng; HAOPei; HEYou-Yu; GUOZong-Ming; QINLei; SUJiong; LIUBo-Shu; HUANGYin; NANPeng; LIChuan-Song; XIONGBin; LUOXiao-Min; ZHAOGuo-Ping; PEIGang; CHENKai-Xian; SHENXu; SHENJian-Hua; ZOUJian-Ping; HEWei-Zhong; SHITie-Liu; ZHONGYang; JIANGHua-Liang; LIYi-Xue

    2003-01-01

    AIM:To obtain the information of ligand-receptor binding between thd S protein of SARS_CoV and CD13, identify the possible interacting domains or motifs related to binding sites, and provide clues for studying the functions of SARS proteins and designing anti-SARS drugs and vaccines. METHODS: On the basis of comparative genomics, the homology search, phylogenetic analyses, and multi-sequence alignment were used to predict CD13 related interacting domains and binding sites sites in the S protein of SARS_CoV. Molecular modeling and docking simulation methods were employed to address the interaction feature between CD13 and S protein of SARS_CoV in validating the bioinformatics predictions. RESULTS:Possible binding sites in the SARS_CoV S protein to CD13 have been mapped out by using bioinformatics analysis tools. The binding for one protein-protein interaction pair (D757-R761 motif of the SARS_CoV S protein to P585-A653 domain of CD13) has been simulated by molecular modeling and docking simulation methods. CONCLUSION:CD13 may be a possible receptor of the SARS_CoV S protein which may be associated with the SARS infection. This study also provides a possible strategy for mapping the possible binding receptors of the proteins in a genome.

  7. Surface vimentin is critical for the cell entry of SARS-CoV.

    Science.gov (United States)

    Yu, Yvonne Ting-Chun; Chien, Ssu-Chia; Chen, I-Yin; Lai, Chia-Tsen; Tsay, Yeou-Guang; Chang, Shin C; Chang, Ming-Fu

    2016-01-22

    Severe acute respiratory syndrome coronavirus (SARS-CoV) caused a global panic due to its high morbidity and mortality during 2002 and 2003. Soon after the deadly disease outbreak, the angiotensin-converting enzyme 2 (ACE2) was identified as a functional cellular receptor in vitro and in vivo for SARS-CoV spike protein. However, ACE2 solely is not sufficient to allow host cells to become susceptible to SARS-CoV infection, and other host factors may be involved in SARS-CoV spike protein-ACE2 complex. A host intracellular filamentous cytoskeletal protein vimentin was identified by immunoprecipitation and LC-MS/MS analysis following chemical cross-linking on Vero E6 cells that were pre-incubated with the SARS-CoV spike protein. Moreover, flow cytometry data demonstrated an increase of the cell surface vimentin level by 16.5 % after SARS-CoV permissive Vero E6 cells were treated with SARS-CoV virus-like particles (VLPs). A direct interaction between SARS-CoV spike protein and host surface vimentin was further confirmed by far-Western blotting. In addition, antibody neutralization assay and shRNA knockdown experiments indicated a vital role of vimentin in cell binding and uptake of SARS-CoV VLPs and the viral spike protein. A direct interaction between vimentin and SARS-CoV spike protein during viral entry was observed. Vimentin is a putative anti-viral drug target for preventing/reducing the susceptibility to SARS-CoV infection.

  8. Potent and specific inhibition of SARS-CoV antigen expression by RNA interference

    Institute of Scientific and Technical Information of China (English)

    TAO Peng; ZHANG Jun; TANG Ni; ZHANG Bing-qiang; HE Tong-chuan; HUANG Ai-long

    2005-01-01

    Background Severe acute respiratory syndrome (SARS) is an infectious disease caused by SARS-CoV. There are no effective antiviral drugs for SARS although the epidemic of SARS was controlled. The aim of this study was to develop an RNAi (RNA interference) approach that specifically targeted the N gene sequence of severe acute respiratory syndrome associated coronavirus (SARS-CoV) by synthesizing short hairpin RNA (shRNA) in vivo, and to assess the inhibitory effect of this shRNA on SARS-CoV N antigen expression. Methods The eukaryotic expression plasmid pEGFP-C1-N, containing SARS-CoV N gene, was co-transfected into 293 cells with either the RNAi plasmid pshRNA-N or unrelated control plasmid pshRNA-HBV-C4. At 24, 48 and 72 hours post transfection, the green fluorescence was observed through a fluorescence microscope. The RNA levels of SARS-CoV N were determined by reverse transcription polymerase chain reaction (RT-PCR). The expression of Green Fluorescent Protein (GFP) and protein N were detected using Western blot.Results The vector, pshRNA-N expressing shRNA which targeted the N gene of SARS-CoV, was successfully constructed. The introduction of RNAi plasmid efficiently and specifically inhibited the synthesis of protein N. RT-PCR showed that RNAs of N gene were clearly reduced when the pEGFP-C1-N was cotransfected with pshRNA-N, whereas the control vector did not exhibit inhibitory effect on N gene transcription.Conclusions Our results demonstrate that RNAi mediated silencing of SARS-CoV gene could effectively inhibit expression of SARS-CoV antigen, hence RNAi based strategy should be further explored as a more efficacious antiviral therapy of SARS-CoV infection.

  9. The animal origin of SARS-CoV

    Institute of Scientific and Technical Information of China (English)

    2005-01-01

    The first case of severe acute respiratory syndrome(SARS)in Guangdong province was reported on2Jan2003,whileretrospective survey has datedthe first index case on16Nov2002.In months that followed,pandemic of SARS widelyspread over the world until July2003,infecting8454people and claiming908deathsin39countries andregions global-ly.On16Dec2003,a32years old photographerlivinginsuburban Guangzhou presented withsymptoms of SARSinfec-tion.There were3other ensuing cases betweenthe end of2003and Jan2004.On23March200...

  10. Inhibition of SARS Pseudovirus Cell Entry by Lactoferrin Binding to Heparan Sulfate Proteoglycans

    Science.gov (United States)

    Lang, Jianshe; Yang, Ning; Deng, Jiejie; Liu, Kangtai; Yang, Peng; Zhang, Guigen; Jiang, Chengyu

    2011-01-01

    It has been reported that lactoferrin (LF) participates in the host immune response against Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) invasion by enhancing NK cell activity and stimulating neutrophil aggregation and adhesion. We further investigated the role of LF in the entry of SARS pseudovirus into HEK293E/ACE2-Myc cells. Our results reveal that LF inhibits SARS pseudovirus infection in a dose-dependent manner. Further analysis suggested that LF was able to block the binding of spike protein to host cells at 4°C, indicating that LF exerted its inhibitory function at the viral attachment stage. However, LF did not disrupt the interaction of spike protein with angiotensin-converting enzyme 2 (ACE2), the functional receptor of SARS-CoV. Previous studies have shown that LF colocalizes with the widely distributed cell-surface heparan sulfate proteoglycans (HSPGs). Our experiments have also confirmed this conclusion. Treatment of the cells with heparinase or exogenous heparin prevented binding of spike protein to host cells and inhibited SARS pseudovirus infection, demonstrating that HSPGs provide the binding sites for SARS-CoV invasion at the early attachment phase. Taken together, our results suggest that, in addition to ACE2, HSPGs are essential cell-surface molecules involved in SARS-CoV cell entry. LF may play a protective role in host defense against SARS-CoV infection through binding to HSPGs and blocking the preliminary interaction between SARS-CoV and host cells. Our findings may provide further understanding of SARS-CoV pathogenesis and aid in treatment of this deadly disease. PMID:21887302

  11. Anatomy of a SAR impulse response.

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin Walter

    2007-08-01

    A principal measure of Synthetic Aperture Radar (SAR) image quality is the manifestation in the SAR image of a spatial impulse, that is, the SAR's Impulse Response (IPR). IPR requirements direct certain design decisions in a SAR. Anomalies in the IPR can point to specific anomalous behavior in the radar's hardware and/or software.

  12. Pains and Gains from China's Experiences with Emerging Epidemics: From SARS to H7N9

    Science.gov (United States)

    Hua, Jinwen; Yu, Weijia; Chen, Jiajie; Kang, Kang; Qiu, Congling

    2016-01-01

    Over the recent decades, China experienced several emerging virus outbreaks including those caused by the severe acute respiratory syndrome- (SARS-) coronavirus (Cov), H5N1 virus, and H7N9 virus. The SARS tragedy revealed faults in China's infectious disease prevention system, propelling the Chinese government to enact reforms that enabled better combating of the subsequent H1N1 and H7N9 avian flu epidemics. The system is buttressed by three fundamental, mutually reinforcing components: (1) enduring government administration reforms, including legislation establishing a unified public health emergency management system; (2) prioritized funding for biotechnology and biomedicine industrialization, especially in the areas of pathogen identification, drug production, and the development of vaccines and diagnostics; and (3) increasing investment for public health and establishment of a rapid-response infectious diseases prevention and control system. China is now using its hard-gained experience to support the fight against Ebola in Africa and the Middle East Respiratory Syndrome in its own country. PMID:27525272

  13. Insights into RNA synthesis, capping, and proofreading mechanisms of SARS-coronavirus.

    Science.gov (United States)

    Sevajol, Marion; Subissi, Lorenzo; Decroly, Etienne; Canard, Bruno; Imbert, Isabelle

    2014-12-19

    The successive emergence of highly pathogenic coronaviruses (CoVs) such as the Severe Acute Respiratory Syndrome (SARS-CoV) in 2003 and the Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in 2012 has stimulated a number of studies on the molecular biology. This research has provided significant new insight into functions and activities of the replication/transcription multi-protein complex. The latter directs both continuous and discontinuous RNA synthesis to replicate and transcribe the large coronavirus genome made of a single-stranded, positive-sense RNA of ∼30 kb. In this review, we summarize our current understanding of SARS-CoV enzymes involved in RNA biochemistry, such as the in vitro characterization of a highly active and processive RNA polymerase complex which can associate with methyltransferase and 3'-5' exoribonuclease activities involved in RNA capping, and RNA proofreading, respectively. The recent discoveries reveal fascinating RNA-synthesizing machinery, highlighting the unique position of coronaviruses in the RNA virus world. Copyright © 2014 Elsevier B.V. All rights reserved.

  14. Roads as sources of heavy metals in urban areas. The Covões Catchment experiment, Coimbra, Portugal

    Science.gov (United States)

    Ferreira, António J. D.; Soares, Daniel; Ferreira, Carla S. S.; Walsh, Rory P. D.

    2015-04-01

    Cities are the home to 50% of the human specie [UN 2011 Ramalho & Hobbs 2012], whose wellbeing, way of life and exposure to hazard situations are directly related to the built environment. Cities are often seen as ecological systems just a short step away from collapse [Newman 2006]. Being a human construction, cities disrupt the natural cycles and the patterns of temporal and spatial distribution of environmental and ecological processes. Urbanization produces ruptures in biota, water, energy and nutrients connectivity that can lead to an enhanced exposure to disruptive events that hamper the wellbeing and the resilience of urban communities in a global change context. A major issue in what concerns the threats to human and ecosystem health in urban areas is the presence of heavy metals, and the related processes that govern their source, transport and fade r uptake by the vegetation. In this work, we present an analysis of heavy metal sources and transport processes at various types of roads within the Ribeira dos Covões peri-urban experimental catchment in central Portugal. The surveyed heavy metals (Cadmium, Lead, Coper, and Zinc) show significant differences as a result of the type of rainfall event, the length of the antecedent dry spell, the traffic volume and the heavy metals sources. For some locations, namely for the roads with heavy traffic volume, the heavy metal concentrations exceed the limits established by law, which has severe implications to the downstream ecosystems and to the possible use of the water from roads to close the resources loop in urban areas, namely in what concerns their use to water the urban green infrastructure or to irrigate the urban agriculture fields.

  15. State-of-art of Geosynchronous SAR

    Institute of Scientific and Technical Information of China (English)

    MAO Er-ke; LONG Teng; ZENG Tao; HU Cheng; TIAN Ye

    2012-01-01

    Geosynchronous Earth Orbit Synthetic Aperture Radar (GEO SAR) runs in the height of 360000Km geosynchronous earth orbit,compared with traditional Low Earth Orbit (LEO) SAR (orbit height under 1000Km),GEO SAR has advantages of shorter repeat period,wider swath and so on.Firstly,the basic principle and state-of-art of GEO SAR in domestic and overseas are introduced.Secondly,coverage characteristic of GEO SAR is analyzed.Thirdly,the key problems of yaw steering and imaging on curved trajectory in GEO SAR are discussed in detail,and the corresponding primary solutions are presented in order to promote future research on GEO SAR.

  16. High Resolution Processing with an Active Phased Array SAR

    NARCIS (Netherlands)

    Nijenboer, F.J.; Otten, M.P.G.

    1999-01-01

    The Dutch PHARUS system is a polarimetric active phased array SAR capable of performing advanced SAR modes. Advanced SAR modes that are being investigated are: spotlight SAR, sliding spotlight SAR, stepped frequency SAR and interferometric SAR. The flight experiments and automatic beam steering

  17. Spatio-temporal evolution of Beijing 2003 SARS epidemic

    Institute of Scientific and Technical Information of China (English)

    2010-01-01

    Studying spatio-temporal evolution of epidemics can uncover important aspects of interaction among people, infectious diseases, and the environment, providing useful insights and modeling support to facilitate public health response and possibly prevention measures. This paper presents an empirical spatio-temporal analysis of epidemiological data concerning 2321 SARS-infected patients in Beijing in 2003. We mapped the SARS morbidity data with the spatial data resolution at the level of street and township. Two smoothing methods, Bayesian adjustment and spatial smoothing, were applied to identify the spatial risks and spatial transmission trends. Furthermore, we explored various spatial patterns and spatio-temporal evolution of Beijing 2003 SARS epidemic using spatial statistics such as Moran’s I and LISA. Part of this study is targeted at evaluating the effectiveness of public health control measures implemented during the SARS epidemic. The main findings are as follows. (1) The diffusion speed of SARS in the northwest-southeast direction is weaker than that in northeast-southwest direction. (2) SARS’s spread risk is positively spatially associated and the strength of this spatial association has experienced changes from weak to strong and then back to weak during the lifetime of the Beijing SARS epidemic. (3) Two spatial clusters of disease cases are identified: one in the city center and the other in the eastern suburban area. These two clusters followed different evolutionary paths but interacted with each other as well. (4) Although the government missed the opportunity to contain the early outbreak of SARS in March 2003, the response strategies implemented after the mid of April were effective. These response measures not only controlled the growth of the disease cases, but also mitigated the spatial diffusion.

  18. Risk factors for SARS transmission from patients requiring intubation: a multicentre investigation in Toronto, Canada.

    Directory of Open Access Journals (Sweden)

    Janet Raboud

    Full Text Available BACKGROUND: In the 2003 Toronto SARS outbreak, SARS-CoV was transmitted in hospitals despite adherence to infection control procedures. Considerable controversy resulted regarding which procedures and behaviours were associated with the greatest risk of SARS-CoV transmission. METHODS: A retrospective cohort study was conducted to identify risk factors for transmission of SARS-CoV during intubation from laboratory confirmed SARS patients to HCWs involved in their care. All SARS patients requiring intubation during the Toronto outbreak were identified. All HCWs who provided care to intubated SARS patients during treatment or transportation and who entered a patient room or had direct patient contact from 24 hours before to 4 hours after intubation were eligible for this study. Data was collected on patients by chart review and on HCWs by interviewer-administered questionnaire. Generalized estimating equation (GEE logistic regression models and classification and regression trees (CART were used to identify risk factors for SARS transmission. RESULTS: 45 laboratory-confirmed intubated SARS patients were identified. Of the 697 HCWs involved in their care, 624 (90% participated in the study. SARS-CoV was transmitted to 26 HCWs from 7 patients; 21 HCWs were infected by 3 patients. In multivariate GEE logistic regression models, presence in the room during fiberoptic intubation (OR = 2.79, p = .004 or ECG (OR = 3.52, p = .002, unprotected eye contact with secretions (OR = 7.34, p = .001, patient APACHE II score > or = 20 (OR = 17.05, p = .009 and patient Pa0(2/Fi0(2 ratio < or = 59 (OR = 8.65, p = .001 were associated with increased risk of transmission of SARS-CoV. In CART analyses, the four covariates which explained the greatest amount of variation in SARS-CoV transmission were covariates representing individual patients. CONCLUSION: Close contact with the airway of severely ill patients and failure of infection control practices to prevent exposure

  19. DEM FROM SAR:PRINCIPLE AND APPLICATION

    Institute of Scientific and Technical Information of China (English)

    Li Deren; Yang Jie

    2003-01-01

    The paper gives an overview of the principle and application of generating DEM from SAR, including the principle and processing flow of generating DEM from single SAR and SAR interferometry. Afterwards, the application fields of InSAR for terrain surveying, volcanic terrain surveying and D-InSAR for monitoring ground subsiding are listed and described as well.The problem and prospect of application are also pointed out in the last part of this paper.

  20. The SARS-unique domain (SUD of SARS coronavirus contains two macrodomains that bind G-quadruplexes.

    Directory of Open Access Journals (Sweden)

    Jinzhi Tan

    2009-05-01

    Full Text Available Since the outbreak of severe acute respiratory syndrome (SARS in 2003, the three-dimensional structures of several of the replicase/transcriptase components of SARS coronavirus (SARS-CoV, the non-structural proteins (Nsps, have been determined. However, within the large Nsp3 (1922 amino-acid residues, the structure and function of the so-called SARS-unique domain (SUD have remained elusive. SUD occurs only in SARS-CoV and the highly related viruses found in certain bats, but is absent from all other coronaviruses. Therefore, it has been speculated that it may be involved in the extreme pathogenicity of SARS-CoV, compared to other coronaviruses, most of which cause only mild infections in humans. In order to help elucidate the function of the SUD, we have determined crystal structures of fragment 389-652 ("SUD(core" of Nsp3, which comprises 264 of the 338 residues of the domain. Both the monoclinic and triclinic crystal forms (2.2 and 2.8 A resolution, respectively revealed that SUD(core forms a homodimer. Each monomer consists of two subdomains, SUD-N and SUD-M, with a macrodomain fold similar to the SARS-CoV X-domain. However, in contrast to the latter, SUD fails to bind ADP-ribose, as determined by zone-interference gel electrophoresis. Instead, the entire SUD(core as well as its individual subdomains interact with oligonucleotides known to form G-quadruplexes. This includes oligodeoxy- as well as oligoribonucleotides. Mutations of selected lysine residues on the surface of the SUD-N subdomain lead to reduction of G-quadruplex binding, whereas mutations in the SUD-M subdomain abolish it. As there is no evidence for Nsp3 entering the nucleus of the host cell, the SARS-CoV genomic RNA or host-cell mRNA containing long G-stretches may be targets of SUD. The SARS-CoV genome is devoid of G-stretches longer than 5-6 nucleotides, but more extended G-stretches are found in the 3'-nontranslated regions of mRNAs coding for certain host-cell proteins

  1. sar Ades

    Directory of Open Access Journals (Sweden)

    Aparecida Angélica Zoqui Paulovic Sabadini

    Full Text Available Este artigo é uma homenagem ao ilustre professor César Ades (1943-2012. Etólogo, Especialista em comportamento animal, Ades foi professor titular do Instituto de Psicologia da Universidade de São Paulo (IPUSP, atuando como docente do Departamento de Psicologia Experimental. O artigo descreve parte de sua rica vida acadêmica e profissional e apresenta, de forma resumida, sua trajetória na Universidade de São Paulo, como aluno, professor, pesquisador e orientador e sua atuação como administrador no Instituto de Psicologia e no Instituto de Estudos Avançados, além de sua atuação na Academia Paulista de Psicologia e em sociedades científicas. São destacados a importância de suas contribuições para a área de Psicologia e seu respeito pela vida, pelas pessoas e pelos animais.

  2. Chest X-ray imaging of patients with SARS

    Institute of Scientific and Technical Information of China (English)

    陆普选; 周伯平; 陈心春; 袁明远; 龚小龙; 杨根东; 刘锦清; 袁本通; 郑广平; 杨桂林; 王火生

    2003-01-01

    Objective To investigate the chest X-ray manifestations of SARS cases.Methods A retrospective study was conducted among 52 clinically confirmed SARS patients from February 9 to May 10, 2003. Chest X-ray scanning was performed at a interval of 1-3 days according to the requirements. The manifestations and special features of SARS in X-ray were analyzed. Results Small or large patchy shadows with intensive density in both lungs were observed in 31 cases, ground-glass like opacification in 16, small patchy shadows in one lung lobe or one lung segment in 18, nodular shadows in one lung segment in 1, and increased lung marking in lung interstitial tissues in 2. Rapidly changing consolidations revealed in chest X-ray images were found to be associated with SARS infections, and they were not affected by treatment with antibiotics.Conclusion Chest X-ray provides a sensitive and specific method for the diagnosis and treatment of SARS, and those present with symptoms and signs should undergo chest X-ray scanning every 1-3 days.

  3. 对非典型肺炎感染者的心理干预%Psychological Intervention on SARS Patients

    Institute of Scientific and Technical Information of China (English)

    郑小东; 王东宇

    2003-01-01

    Centering on the severe acute respiratory syndrome (SARS) or atypical pneumonia pa-tient, this thesis describes concretively the patient's psychological changing process involving in the wholecourse of early - term of infection, treatment and post - treatment. Furthermore, this paper discuss the ne-cessity and feasibility for the psychological worker or medical workers to use psychological methods tomake psychological intervention on SARS patients.

  4. 人卵巢颗粒肿瘤细胞COV434中抗苗勒氏管激素抑制干细胞生长因子表达的实验研究%Inhibition of stem cell factor expression by anti-müllerian hormone in human ovarian granulosa cell tumor COV434 cell line: an experimental study

    Institute of Scientific and Technical Information of China (English)

    王飞苗; 宋梦玲; 芦瑞萍; 马会明; 郑梦雪; 胡蓉

    2015-01-01

    目的 探讨人卵巢颗粒肿瘤细胞COV434中AMH对SCF表达的抑制作用.方法 用课题组前期已构建及鉴定成功转染AMH真核表达载体pIRES2-EGFP-AMH的COV434细胞系作为实验组,将空质粒载体转染的COV434细胞系作为阴性对照组;未经转染的COV434系作为空白对照组,分别采用Western blot和免疫荧光法检测不同干预组SCF蛋白的表达水平.结果 ①Western blot实验结果显示转染AMH真核表达载体pIRES2-EGFP-AMH的COV434中AMH表达较空白对照组和阴性对照组明显增强(P<0.05),阴性对照组和空白对照组无统计学差异(P>0.05).②Western blot实验结果显示SCF在实验组表达较空白对照组和阴性对照组显著降低(P<0.05).③免疫荧光实验结果显示SCF在实验组的平均光密度值较阴性对照组及空白对照组的表达显著升高(P<0.05).结论 人卵巢颗粒肿瘤细胞COV434中AMH能有效抑制SCF蛋白的表达,为颗粒细胞中AMH调控SCF机制的研究提供科学基础.

  5. Severe acute respiratory syndrome (SARS)

    Science.gov (United States)

    ... include: Arterial blood tests Blood clotting tests Blood chemistry tests Chest x-ray or chest CT scan ... The death rate from SARS was 9 to 12% of those diagnosed. In people over age 65, the death ...

  6. TerraSAR-X mission

    Science.gov (United States)

    Werninghaus, Rolf

    2004-01-01

    The TerraSAR-X is a German national SAR- satellite system for scientific and commercial applications. It is the continuation of the scientifically and technologically successful radar missions X-SAR (1994) and SRTM (2000) and will bring the national technology developments DESA and TOPAS into operational use. The space segment of TerraSAR-X is an advanced high-resolution X-Band radar satellite. The system design is based on a sound market analysis performed by Infoterra. The TerraSAR-X features an advanced high-resolution X-Band Synthetic Aperture Radar based on the active phased array technology which allows the operation in Spotlight-, Stripmap- and ScanSAR Mode with various polarizations. It combines the ability to acquire high resolution images for detailed analysis as well as wide swath images for overview applications. In addition, experimental modes like the Dual Receive Antenna Mode allow for full-polarimetric imaging as well as along track interferometry, i.e. moving target identification. The Ground Segment is optimized for flexible response to (scientific and commercial) User requests and fast image product turn-around times. The TerraSAR-X mission will serve two main goals. The first goal is to provide the strongly supportive scientific community with multi-mode X-Band SAR data. The broad spectrum of scientific application areas include Hydrology, Geology, Climatology, Oceanography, Environmental Monitoring and Disaster Monitoring as well as Cartography (DEM Generation) and Interferometry. The second goal is the establishment of a commercial EO-market in Europe which is driven by Infoterra. The commercial goal is the development of a sustainable EO-business so that the e.g. follow-on systems can be completely financed by industry from the profit. Due to its commercial potential, the TerraSAR-X project will be implemented based on a public-private partnership with the Astrium GmbH. This paper will describe first the mission objectives as well as the

  7. The effect of severe acute respiratory syndrome (SARS) on emergency airway management.

    Science.gov (United States)

    Wong, Evelyn; Ho, Khoy Kheng

    2006-07-01

    From early March 2003 to late May 2003, severe acute respiratory syndrome (SARS) was detected in Singapore. The increase in workload and new infection control procedures were thought to affect resuscitation and airway management. Our aim was to study the effects of wearing of personal protective equipment (PPE) and powered air-purifying respirator (PAPR) and the restriction in the number of resuscitation personnel on airway management during the SARS crisis. Data was collected prospectively through an ongoing emergency airway registry. The data was divided into three periods: (1) before PPE was instituted from 1 November 2002 to 31 March 2003; (2) during SARS (when PPE use was mandatory) from 1 April to 31 July 2003; (3) post-SARs (when PPE use was non-mandatory but encouraged) from 1 August to 31 March 2004. There was no change in patient demographics during the three periods. There were significant increases in the proportion of resuscitation cases and airway interventions during the SARS period compared to the pre-SARS period. The resident medical officer intubation rate decreased from 45.1% pre-SARS to 35.2% during SARS and 17.7% post-SARS. The complication rates were 10.5%, 9.9% and 9.4% in periods 1-3, respectively. Restriction in the number of healthcare staff attending to each patient may have influenced the department's decision to allow only the most confident or experienced personnel to manage the airway. The exposure of junior medical officers in emergency airway management during SARS and the immediate post-SARS period was decreased. This trend should be monitored further and intervention may be necessary should it continue to decline.

  8. The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus

    Energy Technology Data Exchange (ETDEWEB)

    McDermott, Jason E.; Mitchell, Hugh D.; Gralinski, Lisa E.; Eisfeld, Amie J.; Josset, Laurence; Bankhead, Armand; Neumann, Gabriele; Tilton, Susan C.; Schäfer, Alexandra; Li, Chengjun; Fan, Shufang; McWeeney, Shannon; Baric, Ralph S.; Katze, Michael G.; Waters, Katrina M.

    2016-09-23

    The complex interplay between viral replication and host immune response during infection remains poorly understood. While many viruses are known to employ antiimmune strategies to facilitate their replication, highly pathogenic virus infections can also cause an excessive immune response that exacerbates, rather than reduces pathogenicity. To investigate this dichotomy in severe acute respiratory syndrome coronavirus (SARS-CoV), we developed a transcriptional network model of SARS-CoV infection in mice and used the model to prioritize candidate regulatory targets for further investigation. We validated our predictions in 18 different knockout (KO) mouse strains, showing that network topology provides significant predictive power to identify genes that are important for viral infection. We identified a novel player in the immune response to virus infection, Kepi, an inhibitory subunit of the protein phosphatase 1 (PP1) complex, which protects against SARS-CoV pathogenesis. We also found that receptors for the proinflammatory cytokine, tumor necrosis factor alpha (TNFα), promote pathogenesis through a parallel feed-forward circuit that promotes inflammation. These results are consistent with previous studies showing the role of over-stimulation of the inflammatory response to SARS-CoV in pathogenesis. We conclude that the critical balance between immune response and inflammation can be manipulated to improve the outcome of the infection. Further, our study provides two potential therapeutic strategies for mitigating the effects of SARS-CoV infection, and may provide insight into treatment strategies for Middle East Respiratory Syndrome Coronavirus (MERS-CoV).

  9. Focusing of bistatic SAR data

    Science.gov (United States)

    Bia, Pietro; Ricci, Nicola; Zonno, Mariantonietta; Nico, Giovanni; Catalao, Joao; Tesauro, Manlio

    2014-10-01

    The problems of simulation of bistatic SAR raw data and focusing are studied. A discrete target simulator is described. The simulator introduces the scene topography and compute the integration time of general bistatic configurations providing a means to derived maps of the range and azimuth spatial resolutions. The problem of focusing of bistatic SAR data acquired in a translational-invariant bistatic configuration is studied by deriving the bistatic Point Target Reference spectrum and presenting an analytical solution for its stationary points.

  10. The perceived threat of SARS and its impact on precautionary actions and adverse consequences: a qualitative study among Chinese communities in the United Kingdom and the Netherlands

    NARCIS (Netherlands)

    Jiang, X.; Elam, G.; Yuen, C.; Voeten, H.A.C.M.; Zwart, de O.; Veldhuijzen, I.; Brug, J.

    2009-01-01

    BACKGROUND: Although the SARS outbreak involved few probable cases of infection in Europe, swift international spread of infections raised the possibility of outbreaks. In particular, SARS presented a sociopsychological and economic threat to European Chinese communities because of their close links

  11. A facile inhibitor screening of SARS coronavirus N protein using nanoparticle-based RNA oligonucleotide

    Directory of Open Access Journals (Sweden)

    Roh C

    2012-05-01

    Full Text Available Changhyun RohDivision of Biotechnology, Advanced Radiation Technology Institute (ARTI, Korea Atomic Energy Research Institute (KAERI, Jeongeup, Republic of KoreaAbstract: Hundreds of million people worldwide have been infected with severe acute respiratory syndrome (SARS, and the rate of global death from SARS has remarkably increased. Hence, the development of efficient drug treatments for the biological effects of SARS is highly needed. We have previously shown that quantum dots (QDs-conjugated RNA oligonucleotide is sensitive to the specific recognition of the SARS-associated coronavirus (SARS-CoV nucleocapsid (N protein. In this study, we found that a designed biochip could analyze inhibitors of the SARS-CoV N protein using nanoparticle-based RNA oligonucleotide. Among the polyphenolic compounds examined, (--catechin gallate and (--gallocatechin gallate demonstrated a remarkable inhibition activity on SARS-CoV N protein. (--catechin gallate and (--gallocatechin gallate attenuated the binding affinity in a concentrated manner as evidenced by QDs-conjugated RNA oligonucleotide on a designed biochip. At a concentration of 0.05 µg mL–1, (--catechin gallate and (--gallocatechin gallate showed more than 40% inhibition activity on a nanoparticle-based RNA oligonucleotide biochip system.Keywords: SARS, RNA oligonucleotide, quantum dots, inhibitor, screening

  12. SARS: clinical presentation, transmission, pathogenesis and treatment options.

    Science.gov (United States)

    Chan, Paul K S; Tang, Julian W; Hui, David S C

    2006-02-01

    SARS (severe acute respiratory syndrome) appeared as the first emerging infectious disease of this century. It is fortunate that the culprit virus can be grown without much difficulty from a commonly used cell line, allowing an unlimited supply of isolates for further molecular studies and leading to the development of sensitive diagnostic assays. How the virus has successfully jumped the species barrier is still a mystery. The superspreading events that occurred within hospital, hotel and high-density housing estate opens a new chapter in the mechanisms and routes of virus transmission. The old practice of quarantine proved to be still useful in controlling the global outbreak. Despite all the available sophisticated tests, alertness with early recognition by healthcare workers and prompt isolation of suspected cases is still the most important step for containing the spread of the infection. Although the rapidly evolving outbreak did not allow the conducting of systematic clinical trails to evaluate treatment options, the accumulated experience on managing SARS patients will improve the clinical outcome should SARS return. Although SARS led to more than 700 deaths worldwide, the lessons learnt have prepared healthcare systems worldwide to face future emerging and re-emerging infections.

  13. Comparison of two next-generation sequencing kits for diagnosis of epileptic disorders with a user-friendly tool for displaying gene coverage, DeCovA

    Directory of Open Access Journals (Sweden)

    Sarra Dimassi

    2015-12-01

    Full Text Available In recent years, molecular genetics has been playing an increasing role in the diagnostic process of monogenic epilepsies. Knowing the genetic basis of one patient's epilepsy provides accurate genetic counseling and may guide therapeutic options. Genetic diagnosis of epilepsy syndromes has long been based on Sanger sequencing and search for large rearrangements using MLPA or DNA arrays (array-CGH or SNP-array. Recently, next-generation sequencing (NGS was demonstrated to be a powerful approach to overcome the wide clinical and genetic heterogeneity of epileptic disorders. Coverage is critical for assessing the quality and accuracy of results from NGS. However, it is often a difficult parameter to display in practice. The aim of the study was to compare two library-building methods (Haloplex, Agilent and SeqCap EZ, Roche for a targeted panel of 41 genes causing monogenic epileptic disorders. We included 24 patients, 20 of whom had known disease-causing mutations. For each patient both libraries were built in parallel and sequenced on an Ion Torrent Personal Genome Machine (PGM. To compare coverage and depth, we developed a simple homemade tool, named DeCovA (Depth and Coverage Analysis. DeCovA displays the sequencing depth of each base and the coverage of target genes for each genomic position. The fraction of each gene covered at different thresholds could be easily estimated. None of the two methods used, namely NextGene and Ion Reporter, were able to identify all the known mutations/CNVs displayed by the 20 patients. Variant detection rate was globally similar for the two techniques and DeCovA showed that failure to detect a mutation was mainly related to insufficient coverage.

  14. Virtual screening for SARS-CoV protease based on KZ7088 pharmacophore points.

    Science.gov (United States)

    Sirois, Suzanne; Wei, Dong-Qing; Du, Qishi; Chou, Kuo-Chen

    2004-01-01

    Pharmacophore modeling can provide valuable insight into ligand-receptor interactions. It can also be used in 3D (dimensional) database searching for potentially finding biologically active compounds and providing new research ideas and directions for drug-discovery projects. To stimulate the structure-based drug design against SARS (severe acute respiratory syndrome), a pharmacophore search was conducted over 3.6 millions of compounds based on the atomic coordinates of the complex obtained by docking KZ7088 (a derivative of AG7088) to SARS CoV M(pro) (coronavirus main proteinase), as reportedly recently (Chou, K. C.; Wei, D. Q.; Zhong, W. Z. Biochem. Biophys. Res. Commun. 2003, 308, 148-151). It has been found that, of the 3.6 millions of compounds screened, 0.07% are with the score satisfying five of the six pharmacophore points. Moreover, each of the hit compounds has been evaluated for druggability according to 13 metrics based on physical, chemical, and structural properties. Of the 0.07% compounds thus retrieved, 17% have a perfect score of 1.0; while 23% with one druggable rule violation, 13% two violations, and 47% more than two violations. If the criterion for druggability is set at a maximum allowance of two rule violations, we obtain that only about 0.03% of the compounds screened are worthy of further tests by experiments. These findings will significantly narrow down the search scope for potential compounds, saving substantial time and money. Finally, the featured templates derived from the current study will also be very useful for guiding the design and synthesis of effective drugs for SARS therapy.

  15. Photodissociation of ketene: CH{sub 2}CO {yields} CH{sub 2}(a{sup 1}A{sub 1}) + CO(v=1) rates and dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Wade, E.A.

    1996-12-01

    The rotational energy release in the dissociation of ketene (CH{sub 2}CO) along its singlet potential energy surface is observed and compared with several statistical and dynamical theories. Rotational distributions for the product, CO(X{sup 1}{Sigma}+)(v=1), are measured from the threshold for production of CH{sub 2}(a {sup 1}A{sub 1}) (0,0,0) + CO(X{sup 1}{Sigma}+)(v=1) to 1720 cm{sup -1} above. Near threshold (E{le} 200 cm{sup -1} over threshold), phase space theory (PST) matches the observed distributions. At 357 and 490 cm{sup -1}, PST constrained by the measured state distributions of the methylene fragment, provides a good fit to these CO(v=1) rotational distributions. For E > 490 cm{sup -1}, the constrained PST matches the average rotational energy observed but predicts distributions which are broader than observed. This contrasts to the rotational distributions of the {sup 1}CH{sub 2} fragment which become shifted to lower rotational states than PST as energy increases from 200 cm{sup -1} above threshold. Dynamical models, the impulsive model and Franck-Condon mapping, do not account for the product rotational state distributions. The CO(v=1) rotational distributions for E > 200 cm{sup -1} contain no measurable product from triplet channel fragmentation. Therefore, they can be compared with the previously determined CO(v=0) rotational distributions in order to partition the CO(v=0) yield between singlet and triplet channels and recalculate the singlet yield. This new yield is found to be at the upper limits of the range previously reported. Rate constants and quantum yields have been determined for the photodissociation of ketene to produce CH{sub 2}(a {sup 1}A{sub 1}) (0,0,0) + CO(X {sup 1}{Sigma}+)(v=1). At 57, 110, 200, 357, and 490 cm{sup -1} above this product threshold, vibrational branching ratios for the singlet products were measured and compared to phase space theory (PST), separate statistical ensembles (SSE), and variational RRKM (var. RRKM).

  16. Different host cell proteases activate the SARS-coronavirus spike-protein for cell-cell and virus-cell fusion

    Science.gov (United States)

    Simmons, Graham; Bertram, Stephanie; Glowacka, Ilona; Steffen, Imke; Chaipan, Chawaree; Agudelo, Juliet; Lu, Kai; Rennekamp, Andrew J.; Hofmann, Heike; Bates, Paul; Pöhlmann, Stefan

    2011-01-01

    Severe acute respiratory syndrome coronavirus (SARS-CoV) poses a considerable threat to human health. Activation of the viral spike (S)-protein by host cell proteases is essential for viral infectivity. However, the cleavage sites in SARS-S and the protease(s) activating SARS-S are incompletely defined. We found that R667 was dispensable for SARS-S-driven virus-cell fusion and for SARS-S-activation by trypsin and cathepsin L in a virus-virus fusion assay. Mutation T760R, which optimizes the minimal furin consensus motif 758-RXXR-762, and furin overexpression augmented SARS-S-activity, but did not result in detectable SARS-S cleavage. Finally, SARS-S-driven cell-cell fusion was independent of cathepsin L, a protease essential for virus-cell fusion. Instead, a so far unknown leupeptin-sensitive host cell protease activated cellular SARS-S for fusion with target cells expressing high levels of ACE2. Thus, different host cell proteases activate SARS-S for virus-cell and cell-cell fusion and SARS-S cleavage at R667 and 758-RXXR-762 can be dispensable for SARS-S activation. PMID:21435673

  17. Antigen Production in Plant to Tackle Infectious Diseases Flare Up: the Case of SARS

    Directory of Open Access Journals (Sweden)

    Olivia C eDemurtas

    2016-02-01

    Full Text Available Severe Acute Respiratory Syndrome (SARS is a dangerous infection with pandemic potential. It emerged in 2002 and its aetiological agent, the SARS Coronavirus (SARS-CoV, crossed the species barrier to infect humans, showing high morbidity and mortality rates. No vaccines are currently licensed for SARS-CoV and important efforts have been performed during the first outbreak to develop diagnostic tools. Here we demonstrate the transient expression in Nicotiana benthamiana of two important antigenic determinants of the SARS-CoV, the nucleocapsid protein (N and the membrane protein (M using a virus-derived vector or agro-infiltration, respectively. For the M protein, this is the first description of production in plants, while for plant-derived N protein we demonstrate that it is recognized by sera of patients from the SARS outbreak in Hong Kong in 2003. The availability of recombinant N and M proteins from plants opens the way to further evaluation of their potential utility for the development of diagnostic and protection/therapy tools to be quickly manufactured, at low cost and with minimal risk, to face potential new highly infectious SARS-CoV outbreaks.

  18. Antigen Production in Plant to Tackle Infectious Diseases Flare Up: The Case of SARS.

    Science.gov (United States)

    Demurtas, Olivia C; Massa, Silvia; Illiano, Elena; De Martinis, Domenico; Chan, Paul K S; Di Bonito, Paola; Franconi, Rosella

    2016-01-01

    Severe acute respiratory syndrome (SARS) is a dangerous infection with pandemic potential. It emerged in 2002 and its aetiological agent, the SARS Coronavirus (SARS-CoV), crossed the species barrier to infect humans, showing high morbidity and mortality rates. No vaccines are currently licensed for SARS-CoV and important efforts have been performed during the first outbreak to develop diagnostic tools. Here we demonstrate the transient expression in Nicotiana benthamiana of two important antigenic determinants of the SARS-CoV, the nucleocapsid protein (N) and the membrane protein (M) using a virus-derived vector or agro-infiltration, respectively. For the M protein, this is the first description of production in plants, while for plant-derived N protein we demonstrate that it is recognized by sera of patients from the SARS outbreak in Hong Kong in 2003. The availability of recombinant N and M proteins from plants opens the way to further evaluation of their potential utility for the development of diagnostic and protection/therapy tools to be quickly manufactured, at low cost and with minimal risk, to face potential new highly infectious SARS-CoV outbreaks.

  19. Bioinformatic Analysis of Putative Gene Products Encoded in SARS-HCoV Genome

    Institute of Scientific and Technical Information of China (English)

    赵心刚; 韩敬东; 宁元亨; 孟安明; 陈晔光

    2003-01-01

    The cause of severe acute respiratory syndrome (SARS) has been identified as a new coronavirus named as SARS-HCoV.Using bioinformatic methods, we have performed a detailed domain search.In addition to the viral structure proteins, we have found that several putative polypeptides share sequence similarity to known domains or proteins.This study may provide a basis for future studies on the infection and replication process of this notorious virus.

  20. A mouse-adapted SARS-coronavirus causes disease and mortality in BALB/c mice.

    Directory of Open Access Journals (Sweden)

    Anjeanette Roberts

    2007-01-01

    Full Text Available No single animal model for severe acute respiratory syndrome (SARS reproduces all aspects of the human disease. Young inbred mice support SARS-coronavirus (SARS-CoV replication in the respiratory tract and are available in sufficient numbers for statistical evaluation. They are relatively inexpensive and easily accessible, but their use in SARS research is limited because they do not develop illness following infection. Older (12- to 14-mo-old BALB/c mice develop clinical illness and pneumonitis, but they can be hard to procure, and immune senescence complicates pathogenesis studies. We adapted the SARS-CoV (Urbani strain by serial passage in the respiratory tract of young BALB/c mice. Fifteen passages resulted in a virus (MA15 that is lethal for mice following intranasal inoculation. Lethality is preceded by rapid and high titer viral replication in lungs, viremia, and dissemination of virus to extrapulmonary sites accompanied by lymphopenia, neutrophilia, and pathological changes in the lungs. Abundant viral antigen is extensively distributed in bronchial epithelial cells and alveolar pneumocytes, and necrotic cellular debris is present in airways and alveoli, with only mild and focal pneumonitis. These observations suggest that mice infected with MA15 die from an overwhelming viral infection with extensive, virally mediated destruction of pneumocytes and ciliated epithelial cells. The MA15 virus has six coding mutations associated with adaptation and increased virulence; when introduced into a recombinant SARS-CoV, these mutations result in a highly virulent and lethal virus (rMA15, duplicating the phenotype of the biologically derived MA15 virus. Intranasal inoculation with MA15 reproduces many aspects of disease seen in severe human cases of SARS. The availability of the MA15 virus will enhance the use of the mouse model for SARS because infection with MA15 causes morbidity, mortality, and pulmonary pathology. This virus will be of value as

  1. Wave directional spectrum from SAR imagery

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, A.A.; Sarma, Y.V.B.; Menon, H.B.; Vethamony, P.

    Gaussian smoothed SAR image spectra have been evaluated from 512 x 512 pixel sub- scenes of image mode ERS-1 SAR scenes off Goa, Visakhapatnam, Paradeep and Portugal. The two recently acquired scenes off Portugal showed the signature of swell...

  2. SAR Image Enhancement using Particle Filters

    Data.gov (United States)

    National Aeronautics and Space Administration — In this paper, we propose a novel approach to reduce the noise in Synthetic Aperture Radar (SAR) images using particle filters. Interpretation of SAR images is a...

  3. Novel Polarimetric SAR Interferometry Algorithms Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Polarimetric radar interferometry (PolInSAR) is a new SAR imaging mode that is rapidly becoming an important technique for bare earth topographic mapping, tree...

  4. SARS Patients and Their Close Contacts

    Science.gov (United States)

    ... Links Clinician Registry Travelers' Health Fact Sheet for SARS Patients and Their Close Contacts Format: Select one ... of the World Health Organization (WHO) . Symptoms of SARS The illness usually begins with a fever (measured ...

  5. Wave directional spectrum from SAR imagery

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, A.A.; Sarma, Y.V.B.; Menon, H.B.; Vethamony, P.

    Gaussian smoothed SAR image spectra have been evaluated from 512 x 512 pixel subscenes of image mode ERS-1 SAR scenes off Goa, Visakhapatnam, Paradeep and Portugal. The two recently acquired scenes off Portugal showed the signature of swell...

  6. Accelerated Scientific InSAR Processing Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Neva Ridge Technologies proposes to develop a suite of software tools for the analysis of SAR and InSAR data, focused on having a robust and adopted capability well...

  7. Precision Rectification of Airborne SAR Image

    DEFF Research Database (Denmark)

    Dall, Jørgen; Liao, M.; Zhang, Zhe

    1997-01-01

    A simple and direct procedure for the rectification of a certain class of airborne SAR data is presented. The relief displacements of SAR data are effectively removed by means of a digital elevation model and the image is transformed to the ground coordinate system. SAR data from the Danish EMISAR...... for the application of SAR data in the difficult process of map revision and updating....

  8. Exacerbated Innate Host Response to SARS-CoV in Aged Non-Human Primates

    Science.gov (United States)

    Smits, Saskia L.; de Lang, Anna; van den Brand, Judith M. A.; Leijten, Lonneke M.; van IJcken, Wilfred F.; Eijkemans, Marinus J. C.; van Amerongen, Geert; Kuiken, Thijs; Andeweg, Arno C.; Osterhaus, Albert D. M. E.; Haagmans, Bart L.

    2010-01-01

    The emergence of viral respiratory pathogens with pandemic potential, such as severe acute respiratory syndrome coronavirus (SARS-CoV) and influenza A H5N1, urges the need for deciphering their pathogenesis to develop new intervention strategies. SARS-CoV infection causes acute lung injury (ALI) that may develop into life-threatening acute respiratory distress syndrome (ARDS) with advanced age correlating positively with adverse disease outcome. The molecular pathways, however, that cause virus-induced ALI/ARDS in aged individuals are ill-defined. Here, we show that SARS-CoV-infected aged macaques develop more severe pathology than young adult animals, even though viral replication levels are similar. Comprehensive genomic analyses indicate that aged macaques have a stronger host response to virus infection than young adult macaques, with an increase in differential expression of genes associated with inflammation, with NF-κB as central player, whereas expression of type I interferon (IFN)-β is reduced. Therapeutic treatment of SARS-CoV-infected aged macaques with type I IFN reduces pathology and diminishes pro-inflammatory gene expression, including interleukin-8 (IL-8) levels, without affecting virus replication in the lungs. Thus, ALI in SARS-CoV-infected aged macaques developed as a result of an exacerbated innate host response. The anti-inflammatory action of type I IFN reveals a potential intervention strategy for virus-induced ALI. PMID:20140198

  9. SARS Vaccine: Progress and Challenge

    Institute of Scientific and Technical Information of China (English)

    Yan Zhi; James M. Wilson; Hao Shen

    2005-01-01

    Severe acute respiratory syndrome (SARS) emerged in 2002 as a severe and highly contagious infectious disease that rapidly spread to a number of different countries. The collaborative efforts of the global scientific community have provided, within a short period of time, substantial insights into the molecular biology and immunology of SARS-CoV. Although the outbreak has been contained, there is continuous concern that the virus may resurface into the human population through seasonal changes, animal reservoirs or laboratory accidents. The severe morbidity and mortality associated with SARS make it imperative that an effective vaccine be developed to prevent reemergence and epidemics in the future. Cellular & Molecular Immunology. 2005;2(2):101-105.

  10. A Strategy Toward Convergent Combination Immunotherapy for SARS

    Institute of Scientific and Technical Information of China (English)

    Wayne; A.; Marasco

    2005-01-01

    Passive Immunotherapyfor viral infections withimmune humanimmunoglobulin has been usedfor many yearsinthe pro-phylaxis andtreatment of infectious disease such as RSV,CMV,rabies,hepatitis Aand B and others.Recently,ad-vances in antibody engineering have allowedthe rapid isolation and pre-clinical development of human monoclonal anti-bodies(Mab)for the treatment of humaninfectious diseases and other conditions.We have explored the use of humanmonoclonal antibodies against the newly emerged SARS coronavirus(Co...

  11. T-cell immunity of SARS-CoV: Implications for vaccine development against MERS-CoV.

    Science.gov (United States)

    Liu, William J; Zhao, Min; Liu, Kefang; Xu, Kun; Wong, Gary; Tan, Wenjie; Gao, George F

    2017-01-01

    Over 12 years have elapsed since severe acute respiratory syndrome (SARS) triggered the first global alert for coronavirus infections. Virus transmission in humans was quickly halted by public health measures and human infections of SARS coronavirus (SARS-CoV) have not been observed since. However, other coronaviruses still pose a continuous threat to human health, as exemplified by the recent emergence of Middle East respiratory syndrome (MERS) in humans. The work on SARS-CoV widens our knowledge on the epidemiology, pathophysiology and immunology of coronaviruses and may shed light on MERS coronavirus (MERS-CoV). It has been confirmed that T-cell immunity plays an important role in recovery from SARS-CoV infection. Herein, we summarize T-cell immunological studies of SARS-CoV and discuss the potential cross-reactivity of the SARS-CoV-specific immunity against MERS-CoV, which may provide useful recommendations for the development of broad-spectrum vaccines against coronavirus infections. Copyright © 2016 Elsevier B.V. All rights reserved.

  12. SIMULATION STUDY ON AIRBORNE SAR ECHO SIGNAL

    Institute of Scientific and Technical Information of China (English)

    Bao Houbing; Liu Zhao

    2004-01-01

    Through analyzing the influence on echo signal by factors of kinematical parameters of airborne SAR platform and radar antenna direction, this letter, on the basis of classical SAR echo signal analogue algorithm, puts forward certain airborne SAR echo signal analogue algorithm of distance directional frequency domain pulse coherent accumulation, and goes through simulation. The simulation results have proved the effectiveness of this algorithm.

  13. Convolutional Neural Networks for SAR Image Segmentation

    DEFF Research Database (Denmark)

    Malmgren-Hansen, David; Nobel-Jørgensen, Morten

    2015-01-01

    Segmentation of Synthetic Aperture Radar (SAR) images has several uses, but it is a difficult task due to a number of properties related to SAR images. In this article we show how Convolutional Neural Networks (CNNs) can easily be trained for SAR image segmentation with good results. Besides...

  14. SAR Systems and Related Signal Processing

    NARCIS (Netherlands)

    Hoogeboom, P.; Dekker, R.J.; Otten, M.P.G.

    1996-01-01

    Synthetic Aperture Radar (SAR) is today a valuable source of remote sensing information. SAR is a side-looking imaging radar and operates from airborne and spacebome platforms. Coverage, resolution and image quality are strongly influenced by the platform. SAR processing can be performed on standard

  15. SAR Systems and Related Signal Processing

    NARCIS (Netherlands)

    Hoogeboom, P.; Dekker, R.J.; Otten, M.P.G.

    1996-01-01

    Synthetic Aperture Radar (SAR) is today a valuable source of remote sensing information. SAR is a side-looking imaging radar and operates from airborne and spacebome platforms. Coverage, resolution and image quality are strongly influenced by the platform. SAR processing can be performed on standard

  16. Polarization Filtering of SAR Data

    Science.gov (United States)

    Dubois, Pascale C.; Van Zyl, Jakob J.

    1991-01-01

    Theoretical analysis of polarization filtering of synthetic-aperture-radar (SAR) returns provide hybrid method applied to either (1) maximize signal-to-noise ratio of return from given target or (2) enhance contrast between targets of two different types (that have different polarization properties). Method valid for both point and extended targets and for both monostatic and bistatic radars as well as SAR. Polarization information in return signals provides more complete description of radar-scattering properties of targets and used to obtain additional information about targets for use in classifying them, discriminating between them, or enhancing features of radar images.

  17. Molecular signature of clinical severity in recovering patients with severe acute respiratory syndrome coronavirus (SARS-CoV

    Directory of Open Access Journals (Sweden)

    Wu Ting-Shu

    2005-09-01

    Full Text Available Abstract Background Severe acute respiratory syndrome (SARS, a recent epidemic human disease, is caused by a novel coronavirus (SARS-CoV. First reported in Asia, SARS quickly spread worldwide through international travelling. As of July 2003, the World Health Organization reported a total of 8,437 people afflicted with SARS with a 9.6% mortality rate. Although immunopathological damages may account for the severity of respiratory distress, little is known about how the genome-wide gene expression of the host changes under the attack of SARS-CoV. Results Based on changes in gene expression of peripheral blood, we identified 52 signature genes that accurately discriminated acute SARS patients from non-SARS controls. While a general suppression of gene expression predominated in SARS-infected blood, several genes including those involved in innate immunity, such as defensins and eosinophil-derived neurotoxin, were upregulated. Instead of employing clustering methods, we ranked the severity of recovering SARS patients by generalized associate plots (GAP according to the expression profiles of 52 signature genes. Through this method, we discovered a smooth transition pattern of severity from normal controls to acute SARS patients. The rank of SARS severity was significantly correlated with the recovery period (in days and with the clinical pulmonary infection score. Conclusion The use of the GAP approach has proved useful in analyzing the complexity and continuity of biological systems. The severity rank derived from the global expression profile of significantly regulated genes in patients may be useful for further elucidating the pathophysiology of their disease.

  18. SARS coronavirus entry into host cells through a novel clathrin- and caveolae-independent endocytic pathway

    Institute of Scientific and Technical Information of China (English)

    Hongliang Wang; Peng Yang; Kangtai Liu; Feng Guo; Yanli Zhang; Gongyi Zhang; Chengyu Jiang

    2008-01-01

    While severe acute respiratory syndrome coronavirus (SARS-CoV)fwas initially thought to enter cells through direct fusion with the plasma membrane, more recent evidence suggests that virus entry may also involve endocytosis. We have found that SARS-CoV enters cells via pH- and receptor-dependent endocytosis. Treatment of cells with either SARS-CoV spike protein or spike-bearing pseudoviruses resulted in the translocation of angiotensin-converting enzyme 2 (ACE2), the functional receptor of SARS-CoV, from the cell surface to endosomes. In addition, the spike-bearing pseudoviruses and early endosome antigen 1 were found to colocalize in endosomes. Further analyses using specific endocytic pathway inhibitors and dominant-negative Eps15 as well as caveolin-1 colocalization study suggested that virus entry was mediated by a clathrin- and caveolae-independent mechanism. Moreover, cholesterol- and sphingolipid-rich lipid raft microdomains in the plasma membrane, which have been shown to act as platforms for many physiological signaling pathways, were shown to be involved in virus entry. Endocytic entry of SARS-CoV may expand the cellular range of SARS-CoV infection, and our findings here contribute to the understanding of SARS-CoV pathogenesis, providing new information for anti-viral drug research.

  19. A facile inhibitor screening of SARS coronavirus N protein using nanoparticle-based RNA oligonucleotide.

    Science.gov (United States)

    Roh, Changhyun

    2012-01-01

    Hundreds of million people worldwide have been infected with severe acute respiratory syndrome (SARS), and the rate of global death from SARS has remarkably increased. Hence, the development of efficient drug treatments for the biological effects of SARS is highly needed. We have previously shown that quantum dots (QDs)-conjugated RNA oligonucleotide is sensitive to the specific recognition of the SARS-associated coronavirus (SARS-CoV) nucleocapsid (N) protein. In this study, we found that a designed biochip could analyze inhibitors of the SARS-CoV N protein using nanoparticle-based RNA oligonucleotide. Among the polyphenolic compounds examined, (-)-catechin gallate and (-)-gallocatechin gallate demonstrated a remarkable inhibition activity on SARS-CoV N protein. (-)-catechin gallate and (-)-gallocatechin gallate attenuated the binding affinity in a concentrated manner as evidenced by QDs-conjugated RNA oligonucleotide on a designed biochip. At a concentration of 0.05 μg mL(-1), (-)-catechin gallate and (-)-gallocatechin gallate showed more than 40% inhibition activity on a nanoparticle-based RNA oligonucleotide biochip system.

  20. A simple and rapid approach for screening of SARS-coronavirus genotypes: an evaluation study

    Directory of Open Access Journals (Sweden)

    Jin Yongjie

    2005-10-01

    Full Text Available Abstract Background The Severe Acute Respiratory Syndrome (SARS was a newly emerged infectious disease which caused a global epidemic in 2002–2003. Sequence analysis of SARS-coronavirus isolates revealed that specific genotypes predominated at different periods of the epidemic. This information can be used as a footprint for tracing the epidemiology of infections and monitor viral evolution. However, direct sequencing analysis of a large number of clinical samples is cumbersome and time consuming. We present here a simple and rapid assay for the screening of SARS-coronavirus genotypes based on the use of fluorogenic oligonucleotide probes for allelic discrimination. Methods Thirty SARS patients were recruited. Allelic discrimination assays were developed based on the use of fluorogenic oligonucleotide probes (TaqMan. Genotyping of the SARS-coronavirus isolates obtained from these patients were carried out by the allelic discrimination assays and confirmed by direct sequencing. Results Genotyping based on the allelic discrimination assays were fully concordant with direct sequencing. All of the 30 SARS-coronavirus genotypes studied were characteristic of genotypes previously documented to be associated with the latter part of the epidemic. Seven of the isolates contained a previously reported major deletion but in patients not epidemiologically related to the previously studied cohort. Conclusion We have developed a simple and accurate method for the characterization and screening of SARS-coronavirus genotypes. It is a promising tool for the study of epidemiological relationships between documented cases during an outbreak.

  1. Polarimetric scattering and SAR information retrieval

    CERN Document Server

    Jin, Ya-Qiu

    2013-01-01

    Taking an innovative look at Synthetic Aperture Radar (SAR), this practical reference fully covers new developments in SAR and its various methodologies and enables readers to interpret SAR imagery An essential reference on polarimetric Synthetic Aperture Radar (SAR), this book uses scattering theory and radiative transfer theory as a basis for its treatment of topics. It is organized to include theoretical scattering models and SAR data analysis techniques, and presents cutting-edge research on theoretical modelling of terrain surface. The book includes quantitative app

  2. Signal processing for FMCW SAR

    NARCIS (Netherlands)

    Meta, A.; Hoogeboom, P.; Ligthart, L.P.

    2007-01-01

    The combination of frequency-modulated continuous-wave (FMCW) technology and synthetic aperture radar (SAR) techniques leads to lightweight cost-effective imaging sensors of high resolution. One limiting factor to the use of FMCW sensors is the well-known presence of nonlinearities in the

  3. Canopy reconstruction from interferometric SAR

    NARCIS (Netherlands)

    Varekamp, C.

    2001-01-01

    Interferometric Synthetic Aperture Radar (InSAR) is investigated as a method for 3D tree mapping. When operational, the method may be important for monitoring forests with a persistent cloud cover such as tropical rain forests. The problem of crown displacement due to lay-over in a vegetation with a

  4. Stalking SARS: CDC at Work

    Centers for Disease Control (CDC) Podcasts

    2014-05-22

    In this podcast for kids, the Kidtastics talk about the SARS outbreak and how CDC worked to solve the mystery.  Created: 5/22/2014 by National Center for Immunization and Respiratory Diseases (NCIRD).   Date Released: 5/22/2014.

  5. Light weight digital array SAR

    NARCIS (Netherlands)

    Otten, M.; Maas, N.; Bolt, R.; Anitori, L.

    2010-01-01

    A light weight SAR has been designed, suitable for short range tactical UAVs, consisting of a fully digital receive array, and a very compact active transmit antenna. The weight of the complete RF front is expected to be below 3 kg, with a power consumption below 30 W. This X-band system can provide

  6. Pains and Gains from China’s Experiences with Emerging Epidemics: From SARS to H7N9

    Directory of Open Access Journals (Sweden)

    Pengfei Wei

    2016-01-01

    Full Text Available Over the recent decades, China experienced several emerging virus outbreaks including those caused by the severe acute respiratory syndrome- (SARS- coronavirus (Cov, H5N1 virus, and H7N9 virus. The SARS tragedy revealed faults in China’s infectious disease prevention system, propelling the Chinese government to enact reforms that enabled better combating of the subsequent H1N1 and H7N9 avian flu epidemics. The system is buttressed by three fundamental, mutually reinforcing components: (1 enduring government administration reforms, including legislation establishing a unified public health emergency management system; (2 prioritized funding for biotechnology and biomedicine industrialization, especially in the areas of pathogen identification, drug production, and the development of vaccines and diagnostics; and (3 increasing investment for public health and establishment of a rapid-response infectious diseases prevention and control system. China is now using its hard-gained experience to support the fight against Ebola in Africa and the Middle East Respiratory Syndrome in its own country.

  7. Computerized ionospheric tomography based on geosynchronous SAR

    Science.gov (United States)

    Hu, Cheng; Tian, Ye; Dong, Xichao; Wang, Rui; Long, Teng

    2017-02-01

    Computerized ionospheric tomography (CIT) based on spaceborne synthetic aperture radar (SAR) is an emerging technique to construct the three-dimensional (3-D) image of ionosphere. The current studies are all based on the Low Earth Orbit synthetic aperture radar (LEO SAR) which is limited by long repeat period and small coverage. In this paper, a novel ionospheric 3-D CIT technique based on geosynchronous SAR (GEO SAR) is put forward. First, several influences of complex atmospheric environment on GEO SAR focusing are detailedly analyzed, including background ionosphere and multiple scattering effects (induced by turbulent ionosphere), tropospheric effects, and random noises. Then the corresponding GEO SAR signal model is constructed with consideration of the temporal-variant background ionosphere within the GEO SAR long integration time (typically 100 s to 1000 s level). Concurrently, an accurate total electron content (TEC) retrieval method based on GEO SAR data is put forward through subband division in range and subaperture division in azimuth, obtaining variant TEC value with respect to the azimuth time. The processing steps of GEO SAR CIT are given and discussed. Owing to the short repeat period and large coverage area, GEO SAR CIT has potentials of covering the specific space continuously and completely and resultantly has excellent real-time performance. Finally, the TEC retrieval and GEO SAR CIT construction are performed by employing a numerical study based on the meteorological data. The feasibility and correctness of the proposed methods are verified.

  8. [Medical history from SARS to pneumonia].

    Science.gov (United States)

    Zhen, Cheng

    2003-05-31

    SARS is a new kind of pneumonia. From the end of 2002 to the beginning of 2003, SARS broke in Guangdong province, Hong Kong and Beijing, and then gradually spread to the world. SARS is extremely contagious. The symptoms of SARS progress very quickly. SARS smashes the people's tranquil life and many people live in horror, worry and anxiety. But if we review the medical history of pneumonia, we would have a better understanding of SARS. This article focuses the history of people's understanding of pneumonia on the historical documents, diagnosis, etiology and treatment. Through the epidemic of SARS, the author hopes to express that contagion will live with us for a long time, but it is not a deadly disease. It is preventable and good care is essential for contagious patients. As Chinese people, we should have the best use of TCM in our combat with contagion.

  9. Experimental and numerical analysis of B1+ field and SAR with a new transmit array design for 7 T breast MRI

    Science.gov (United States)

    Kim, Junghwan; Krishnamurthy, Narayan; Santini, Tales; Zhao, Yujuan; Zhao, Tiejun; Bae, Kyongtae Ty; Ibrahim, Tamer S.

    2016-08-01

    Developing a radiofrequency (RF) coil system that produces a uniform B1+ field (circularly polarized component of the transverse magnetic field responsible for excitation) and low specific absorption rate (SAR) is critical for high performance ultrahigh field human imaging. In this study, we provide the design of a new eight channel radiofrequency (RF) transmit (Tx) array for breast MRI at 7 T. A numerical analysis utilizing an in-house finite difference time domain (FDTD) package was carried out in (1) four breast models, (2) homogeneous spherical model and (3) full body model to calculate the B1+ intensity (μT) and homogeneity represented by coefficient of variation (CoV = standard deviation/mean) in the proposed RF array design. The numerical results were compared with that measured in breast phantom (Bphantom) and homogeneous spherical phantom at 7 T MRI and showed very good agreement. Average and peak SARs were also calculated in the four breast models and the temperature rises due to the operation of the RF array were also measured in the Bphantom. The proposed RF array; which can operate in a single or multi transmit modes, demonstrates homogeneous RF field excitation with acceptable local/average SAR levels for breast MRI at 7 T.

  10. SARS coronavirus papain-like protease up-regulates the collagen expression through non-Samd TGF-β1 signaling.

    Science.gov (United States)

    Wang, Ching-Ying; Lu, Chien-Yi; Li, Shih-Wen; Lai, Chien-Chen; Hua, Chun-Hung; Huang, Su-Hua; Lin, Ying-Ju; Hour, Mann-Jen; Lin, Cheng-Wen

    2017-05-02

    SARS coronavirus (CoV) papain-like protease (PLpro) reportedly induced the production of TGF-β1 through p38 MAPK/STAT3-meidated Egr-1-dependent activation (Sci. Rep. 6, 25754). This study investigated the correlation of PLpro-induced TGF-β1 with the expression of Type I collagen in human lung epithelial cells and mouse pulmonary tissues. Specific inhibitors for TGF-βRI, p38 MAPK, MEK, and STAT3 proved that SARS-CoV PLpro induced TGF-β1-dependent up-regulation of Type I collagen in vitro and in vivo. Subcellular localization analysis of SMAD3 and SMAD7 indicated that non-SMAD pathways in TGF-β1 signaling involved in the production of Type I collagen in transfected cells with pSARS-PLpro. Comprehensive analysis of ubiquitin-conjugated proteins using immunoprecipitation and nanoLC-MS/MS indicated that SARS-CoV PLpro caused the change in the ubiquitination profile of Rho GTPase family proteins, in which linked with the increase of Rho-like GTPase family proteins. Moreover, selective inhibitors TGF-βRI and STAT6 (AS1517499) ascertained that STAT6 activation was required for PLpro-induced TGF-β1-dependent up-regulation of Type I collagen in human lung epithelial cells. The results showed that SARS-CoV PLpro stimulated TGF-β1-dependent expression of Type I collagen via activating STAT6 pathway. Copyright © 2017 Elsevier B.V. All rights reserved.

  11. Stochastic forecasting of the geomagnetic field from the COV-OBS.x1 geomagnetic field model, and candidate models for IGRF-12

    DEFF Research Database (Denmark)

    Gillet, Nicolas; Barrois, Olivier; Finlay, Chris

    2015-01-01

    filter algorithm. We show that the envelope of forecasts includes the observed secular variation of the geomagnetic field over 5-year intervals, even in the case of rapid changes. In a purpose of testing hypotheses about the core dynamics, this prototype method could be implemented to build the ‘state......We present the geomagnetic field model COV-OBS.x1, covering 1840 to 2020, from which have been derived candidate models for the IGRF-12. Towards the most recent epochs, it is primarily constrained by first differences of observatory annual means and measurements from the Oersted, Champ, and Swarm...... the ‘observations’ uncertainties in data assimilation schemes for the study of the outer core dynamics.We also present and illustrate a stochastic algorithm designed to forecast the geomagnetic field. The radial field at the outer core surface is advected by core motions governed by an auto-regressive process...

  12. Association of SARS susceptibility with single nucleic acid polymorphisms of OASI and MxA genes: A case-control study

    NARCIS (Netherlands)

    J. He (Jing); D. Feng (Dan); S.J. de Vlas (Sake); H. Wang (Hongwei); A. Fontanet (Arnaud); F. Zhang (Fang); S. Plancoulaine (Sabine); F. Tang (Fang); L. Zhan (Lin); H. Yang (Honghui); T. Wang (Teng); J.H. Richardus (Jan Hendrik); J.D.F. Habbema (Dik); W.-C. Cao (Wuchun)

    2006-01-01

    textabstractBackground: Host genetic factors may play a role in susceptibility and resistance to SARS associated coronavirus (SARS-CoV) infection. The study was carried out to investigate the association between the genetic polymorphisms of 2′,5′-oligoadenylate synthetase I (OASI) gene as well as my

  13. Association of SARS susceptibility with single nucleic acid polymorphisms of OAS1 and MxA genes : a case-control study

    NARCIS (Netherlands)

    He, Jing; Feng, Dan; de Vlas, Sake J.; Wang, Hongwei; Fontanet, Arnaud; Zhang, Panhe; Plancoulaine, Sabine; Tang, Fang; Zhan, Lin; Yang, Hong; Wang, Tianbao; Richardus, Jan H.; Habbema, J. Dik F.; Cao, Wuchun

    2006-01-01

    Background: Host genetic factors may play a role in susceptibility and resistance to SARS associated coronavirus (SARS-CoV) infection. The study was carried out to investigate the association between the genetic polymorphisms of 2',5'-oligoadenylate synthetase 1 (OAS1) gene as well as myxovirus resi

  14. Refocusing vibrating targets in SAR images

    Science.gov (United States)

    Wang, Qi; Santhanam, Balu; Pepin, Matthew; Atwood, Tom; Hayat, Majeed M.

    2012-06-01

    In synthetic-aperture radar (SAR) returned signals, ground-target vibrations introduce a phase modulation that is linearly proportional to the vibration displacement. Such modulation, termed the micro-Doppler effect, introduces ghost targets along the azimuth direction in reconstructed SAR images that prevents SAR from forming focused images of the vibrating targets. Recently, a discrete fractional Fourier transform (DFrFT) based method was developed to estimate the vibration frequencies and instantaneous vibration accelerations of the vibrating targets from SAR returned signals. In this paper, a demodulation-based algorithm is proposed to reconstruct focused SAR images of vibrating targets by exploiting the estimation results of the DFrFT-based vibration estimation method. For a single-component harmonic vibration, the history of the vibration displacement is first estimated from the estimated vibration frequency and the instantaneous vibration accelerations. Then a reference signal whose phase is modulated by the estimated vibration displacement with a delay of 180 degree is constructed. After that, the SAR phase history from the vibration target is multiplied by the reference signal and the vibration-induced phase modulation is canceled. Finally, the SAR image containing the re-focused vibration target is obtained by applying the 2-D Fourier transform to the demodulated SAR phase history. This algorithm is applied to simulated SAR data and successfully reconstructs the SAR image containing the re-focused vibrating target.

  15. Controlling Data Collection to Support SAR Image Rotation

    Science.gov (United States)

    Doerry, Armin W.; Cordaro, J. Thomas; Burns, Bryan L.

    2008-10-14

    A desired rotation of a synthetic aperture radar (SAR) image can be facilitated by adjusting a SAR data collection operation based on the desired rotation. The SAR data collected by the adjusted SAR data collection operation can be efficiently exploited to form therefrom a SAR image having the desired rotational orientation.

  16. Infections

    Science.gov (United States)

    ... Does My Child Need? How to Safely Give Acetaminophen Is It a Cold or the Flu? Is the Flu Vaccine a Good Idea for Your Family? Too Late for the Flu Vaccine? Common Childhood Infections Can Chronic Ear Infections Cause Long-Term Hearing Loss? Chickenpox Cold Sores Common Cold Diarrhea Fever and ...

  17. Upscaling the impact of convective overshooting (COV) through BRAMS: a continental and wet-season scale study of the water vapour (WV) budget in the tropical tropopause layer (TTL).

    Science.gov (United States)

    Behera, Abhinna; Rivière, Emmanuel; Marécal, Virginie; Rysman, Jean-François; Claud, Chantal; Burgalat, Jérémie

    2017-04-01

    The stratospheric water vapour (WV) has a conceding impact on the radiative and chemical budget of Earth's atmosphere. The convective overshooting (COV) at the tropics is well admitted for playing a role in transporting directly WV to the stratosphere. Nonetheless, its impact on the lower stratosphere is yet to be determined at global scale, as the satellite and other air-borne measurements are not of having fine enough resolution to quantify this impact at large scale. Therefore, efforts have been made to quantify the influence of COV over the WV budget in the tropical tropopause layer (TTL) through modelling. Our approach is to build two synthetic tropical wet-seasons; where one would be having only deep convection (DC) but no COV at all, and the second one would be having the COV, and in both cases the WV budget in the TTL would be estimated. Before that, a French-Brazilian TRO-pico campaign was carried out at Bauru, Brazil in order to understand the influence of COV on the WV budget in the TTL. The radio-sounding, and the small balloon-borne WV measurements from the campaign are being utilized to validate the model simulation. Brazilian version of Regional Atmospheric Modeling System (BRAMS) is used with a single grid system to simulate a WV variability in a wet-season. Grell's convective parameterization with ensemble closure, microphysics with double moment scheme and 7 types of hydrometeors are incorporated to simulate the WV variability for a wet-season at the tropics. The grid size of simulation is chosen to be 20 km x 20 km horizontally and from surface to 30 km altitude, so that there cannot be COV at all, only DC due to such a relatively coarse resolution. The European Centre for Medium-range Weather Forecasts (ECMWF) operational analyses data are used every 6 hours for grid initialization and boundary conditions, and grid center nudging. The simulation is carried out for a full wet-season (Nov 2012 - Mar 2013) at Brazilian scale, so that it would

  18. A combination of independent transcriptional regulators shapes bacterial virulence gene expression during infection.

    Directory of Open Access Journals (Sweden)

    Samuel A Shelburne

    2010-03-01

    Full Text Available Transcriptional regulatory networks are fundamental to how microbes alter gene expression in response to environmental stimuli, thereby playing a critical role in bacterial pathogenesis. However, understanding how bacterial transcriptional regulatory networks function during host-pathogen interaction is limited. Recent studies in group A Streptococcus (GAS suggested that the transcriptional regulator catabolite control protein A (CcpA influences many of the same genes as the control of virulence (CovRS two-component gene regulatory system. To provide new information about the CcpA and CovRS networks, we compared the CcpA and CovR transcriptomes in a serotype M1 GAS strain. The transcript levels of several of the same genes encoding virulence factors and proteins involved in basic metabolic processes were affected in both DeltaccpA and DeltacovR isogenic mutant strains. Recombinant CcpA and CovR bound with high-affinity to the promoter regions of several co-regulated genes, including those encoding proteins involved in carbohydrate and amino acid metabolism. Compared to the wild-type parental strain, DeltaccpA and DeltacovRDeltaccpA isogenic mutant strains were significantly less virulent in a mouse myositis model. Inactivation of CcpA and CovR alone and in combination led to significant alterations in the transcript levels of several key GAS virulence factor encoding genes during infection. Importantly, the transcript level alterations in the DeltaccpA and DeltacovRDeltaccpA isogenic mutant strains observed during infection were distinct from those occurring during growth in laboratory medium. These data provide new knowledge regarding the molecular mechanisms by which pathogenic bacteria respond to environmental signals to regulate virulence factor production and basic metabolic processes during infection.

  19. Management of Critically Ill Patients with Severe Acute Respiratory Syndrome (SARS

    Directory of Open Access Journals (Sweden)

    2004-03-01

    Full Text Available Severe acute respiratory syndrome (SARS is frequently complicated with acute respiratory failure. In this article, we aim to focus on the management of the subgroup of SARS patients who are critically ill. Most SARS patients would require high flow oxygen supplementation, 20–30% required intensive care unit (ICU or high dependency care, and 13–26% developed acute respiratory distress syndrome (ARDS. In some of these patients, the clinical course can progress relentlessly to septic shock and/or multiple organ dysfunction syndrome (MODS. The management of critically ill SARS patients requires timely institution of pharmacotherapy where applicable and supportive treatment (oxygen therapy, noninvasive and invasive ventilation. Superimposed bacterial and other opportunistic infections are common, especially in those treated with mechanical ventilation. Subcutaneous emphysema, pneumothoraces and pneumomediastinum may arise spontaneously or as a result of positive ventilatory assistance. Older age is a consistently a poor prognostic factor. Appropriate use of personal protection equipment and adherence to infection control measures is mandatory for effective infection control. Much of the knowledge about the clinical aspects of SARS is based on retrospective observational data and randomized-controlled trials are required for confirmation. Physicians and scientists all over the world should collaborate to study this condition which may potentially threaten human existence.

  20. Study on Geosynchronous Circular SAR

    Directory of Open Access Journals (Sweden)

    Hong Wen

    2015-06-01

    Full Text Available The concept of Geosynchronous Circular SAR (Geo-CSAR is introduced in this paper. With the design of the geosynchronous orbit parameters, a near-circular satellite sub-track could be formed to enable the staring imaging mode, which supports the advanced applications for wide-field and 3-D information acquisition under long-term consistent observation. This paper also analyzes Geo-CSAR's imaging formation capabilities, and concludes its attractive advantages over low-earth orbit spaceborne SAR in terms of instantaneous coverage, consistent observing area, 3-D positioning accuracy and etc.. Encouraging expectations for Geo-CSAR thus could be positively predicted in military investigation and disaster monitoring management applications.

  1. Reflectors for SAR performance testing.

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin Walter

    2008-01-01

    Synthetic Aperture Radar (SAR) performance testing and estimation is facilitated by observing the system response to known target scene elements. Trihedral corner reflectors and other canonical targets play an important role because their Radar Cross Section (RCS) can be calculated analytically. However, reflector orientation and the proximity of the ground and mounting structures can significantly impact the accuracy and precision with which measurements can be made. These issues are examined in this report.

  2. SAR Image Complex Pixel Representations

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin W. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2015-03-01

    Complex pixel values for Synthetic Aperture Radar (SAR) images of uniform distributed clutter can be represented as either real/imaginary (also known as I/Q) values, or as Magnitude/Phase values. Generally, these component values are integers with limited number of bits. For clutter energy well below full-scale, Magnitude/Phase offers lower quantization noise than I/Q representation. Further improvement can be had with companding of the Magnitude value.

  3. Spaceborne SAR Imaging Algorithm for Coherence Optimized.

    Directory of Open Access Journals (Sweden)

    Zhiwei Qiu

    Full Text Available This paper proposes SAR imaging algorithm with largest coherence based on the existing SAR imaging algorithm. The basic idea of SAR imaging algorithm in imaging processing is that output signal can have maximum signal-to-noise ratio (SNR by using the optimal imaging parameters. Traditional imaging algorithm can acquire the best focusing effect, but would bring the decoherence phenomenon in subsequent interference process. Algorithm proposed in this paper is that SAR echo adopts consistent imaging parameters in focusing processing. Although the SNR of the output signal is reduced slightly, their coherence is ensured greatly, and finally the interferogram with high quality is obtained. In this paper, two scenes of Envisat ASAR data in Zhangbei are employed to conduct experiment for this algorithm. Compared with the interferogram from the traditional algorithm, the results show that this algorithm is more suitable for SAR interferometry (InSAR research and application.

  4. Signal Processing for Digital Beamforming FMCW SAR

    Directory of Open Access Journals (Sweden)

    Qin Xin

    2014-01-01

    Full Text Available According to the limitations of single channel Frequency Modulation Continuous Wave (FMCW Synthetic Aperture Radar (SAR, Digital Beamforming (DBF technology is introduced to improve system performance. Combined with multiple receive apertures, DBF FMCW SAR can obtain high resolution in low pulse repetition frequency, which can increase the processing gain and decrease the sampling frequency. The received signal model of DBF FMCW SAR is derived. The continuous antenna motion which is the main characteristic of FMCW SAR received signal is taken into account in the whole signal processing. The detailed imaging diagram of DBF FMCW SAR is given. A reference system is also demonstrated in the paper by comparing with a single channel FMCW SAR. The validity of the presented diagram is demonstrated with a point target simulation results.

  5. Building Detection in SAR Imagery

    Energy Technology Data Exchange (ETDEWEB)

    Steinbach, Ryan Matthew [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Koch, Mark William [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Moya, Mary M [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Goold, Jeremy [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2014-08-01

    Current techniques for building detection in Synthetic Aperture Radar (SAR) imagery can be computationally expensive and/or enforce stringent requirements for data acquisition. The desire is to present a technique that is effective and efficient at determining an approximate building location. This approximate location can be used to extract a portion of the SAR image to then perform a more robust detection. The proposed technique assumes that for the desired image, bright lines and shadows, SAR artifact effects, are approximately labeled. These labels are enhanced and utilized to locate buildings, only if the related bright lines and shadows can be grouped. In order to find which of the bright lines and shadows are related, all of the bright lines are connected to all of the shadows. This allows the problem to be solved from a connected graph viewpoint. Where the nodes are the bright lines and shadows and the arcs are the connections between bright lines and shadows. Constraints based on angle of depression and the relationship between connected bright lines and shadows are applied to remove unrelated arcs. Once the related bright lines and shadows are grouped, their locations are combined to provide an approximate building location. Experimental results are provided showing the outcome of the technique.

  6. InSAR Forensics: Tracing InSAR Scatterers in High Resolution Optical Image

    Science.gov (United States)

    Wang, Yuanyuan; Zhu, XiaoXiang

    2015-05-01

    This paper presents a step towards a better interpretation of the scattering mechanism of different objects and their deformation histories in SAR interferometry (InSAR). The proposed technique traces individual SAR scatterer in high resolution optical images where their geometries, materials, and other properties can be better analyzed and classified. And hence scatterers of a same object can be analyzed in group, which brings us to a new level of InSAR deformation monitoring.

  7. Satellite SAR geocoding with refined RPC model

    Science.gov (United States)

    Zhang, Lu; Balz, Timo; Liao, Mingsheng

    2012-04-01

    Recent studies have proved that the Rational Polynomial Camera (RPC) model is able to act as a reliable replacement of the rigorous Range-Doppler (RD) model for the geometric processing of satellite SAR datasets. But its capability in absolute geolocation of SAR images has not been evaluated quantitatively. Therefore, in this article the problems of error analysis and refinement of SAR RPC model are primarily investigated to improve the absolute accuracy of SAR geolocation. Range propagation delay and azimuth timing error are identified as two major error sources for SAR geolocation. An approach based on SAR image simulation and real-to-simulated image matching is developed to estimate and correct these two errors. Afterwards a refined RPC model can be built from the error-corrected RD model and then used in satellite SAR geocoding. Three experiments with different settings are designed and conducted to comprehensively evaluate the accuracies of SAR geolocation with both ordinary and refined RPC models. All the experimental results demonstrate that with RPC model refinement the absolute location accuracies of geocoded SAR images can be improved significantly, particularly in Easting direction. In another experiment the computation efficiencies of SAR geocoding with both RD and RPC models are compared quantitatively. The results show that by using the RPC model such efficiency can be remarkably improved by at least 16 times. In addition the problem of DEM data selection for SAR image simulation in RPC model refinement is studied by a comparative experiment. The results reveal that the best choice should be using the proper DEM datasets of spatial resolution comparable to that of the SAR images.

  8. Association of SARS susceptibility with single nucleic acid polymorphisms of OAS1 and MxA genes: a case-control study

    Directory of Open Access Journals (Sweden)

    Yang Hong

    2006-07-01

    Full Text Available Abstract Background Host genetic factors may play a role in susceptibility and resistance to SARS associated coronavirus (SARS-CoV infection. The study was carried out to investigate the association between the genetic polymorphisms of 2',5'-oligoadenylate synthetase 1 (OAS1 gene as well as myxovirus resistance 1 (MxA gene and susceptibility to SARS in Chinese Han population. Methods A hospital-based case-control study was conducted. A collective of 66 SARS cases and 64 close contact uninfected controls were enrolled in this study. End point real time polymerase chain reaction (PCR and PCR-based Restriction Fragment Length Polymorphism (RFLP analysis were used to detect the single nucleic polymorphisms (SNPs in OAS1 and MxA genes. Information on other factors associated with SARS infection was collected using a pre-tested questionnaire. Univariate and multivariate logistic analyses were conducted. Results One polymorphism in the 3'-untranslated region (3'-UTR of the OAS1 gene was associated with SARS infection. Compared to AA genotype, AG and GG genotypes were found associated with a protective effect on SARS infection with ORs (95% CI of 0.42 (0.20~0.89 and 0.30 (0.09~0.97, respectively. Also, a GT genotype at position 88 in the MxA gene promoter was associated with increased susceptibility to SARS infection compared to a GG genotype (OR = 3.06, 95% CI: 1.25~7.50. The associations of AG genotype in OAS1 and GT genotype in MxA remained significant in multivariate analyses after adjusting for SARS protective measures (OR = 0.38, 95% CI: 0.14~0.98 and OR = 3.22, 95% CI: 1.13~9.18, respectively. Conclusion SNPs in the OAS1 3'-UTR and MxA promoter region appear associated with host susceptibility to SARS in Chinese Han population.

  9. MiniSAR: a miniature, lightweight, low cost, scalable SAR system

    NARCIS (Netherlands)

    Steeghs, T.P.H.; Halsema, D. van; Hoogeboom, P.

    2001-01-01

    TNO-FEL is developing a miniature, lightweight, low cost, and scalable SAR/MTI system called 'MiniSAR'. The MiniSAR system will be unique in its size and architecture. Initially the demonstrator system will be integrated in a two-seater motorglider platform. Wherever possible,

  10. A Research on Airborne Squint Hybrid SAR

    Institute of Scientific and Technical Information of China (English)

    BIANYong; ZHOUYinqing; LIChunsheng

    2004-01-01

    In this paper, we establish the squint mode hybrid SAR (Synthetic aperture radar) geometry. Based on the squint mode SAR geometry, the hybrid SAR signal model in squint case is derived. Based on this signal model, the hybrid SAR imaging process parameter is discussed. Aimed at the squint case, we analyze not only the relationship between the resolution and SAR system parameters, but also the relation between the time extension of the maximum azimuth signal and SAR system parameters. This research establishes the theoretical foundation for the design of squint hybrid SAR and serves as a good guide for the future work of improving the resolution of squint hybrid SAR. Based on the two-step algorithm, by considering the squint angle and cubic phase term, we are going to use the deramp SC-Chirp Scaling algorithm for squint hybrid SAR imaging. This algorithm uses the deramp method for the first step processing, and the SC-Chirp Scaling algorithm for the second step processing. The process procedure of this algorithm includes the squint angle, has the explicit physical meaning, therefore is convenient for analysis. The computer simulation result proves the validity of the analysis.

  11. Bistatic SAR: Signal Processing and Image Formation.

    Energy Technology Data Exchange (ETDEWEB)

    Wahl, Daniel E.; Yocky, David A.

    2014-10-01

    This report describes the significant processing steps that were used to take the raw recorded digitized signals from the bistatic synthetic aperture RADAR (SAR) hardware built for the NCNS Bistatic SAR project to a final bistatic SAR image. In general, the process steps herein are applicable to bistatic SAR signals that include the direct-path signal and the reflected signal. The steps include preprocessing steps, data extraction to for a phase history, and finally, image format. Various plots and values will be shown at most steps to illustrate the processing for a bistatic COSMO SkyMed collection gathered on June 10, 2013 on Kirtland Air Force Base, New Mexico.

  12. TanDEM-X Bistatic SAR Processing

    OpenAIRE

    Balss, Ulrich; Niedermeier, Andreas; Breit, Helko

    2010-01-01

    In June, 2010 the German SAR satellite TanDEM-X (TerraSAR-X-Add-on for Digital Elevation Measurements) will be launched. Together with TerraSAR-X, launched June 15, 2007, it will form the first spaceborne bistatic SAR platform. Usually one of the satellite is transmitting (active satellite), while both are receiving. As both satellites fly in a helix orbit constellation, during a recording a satellite has to be passive, if the other one is close to the line of sight to the observation targ...

  13. DETEKCIJA SPREMEMB V RADARSKIH SLIKAH SAR

    OpenAIRE

    Izak, Rok

    2016-01-01

    V magistrskem delu je opisan princip detekcije sprememb površja Zemlje s pomočjo radarskih slik SAR, ki so bile zajete s satelitom TanDEM-X. Opisani so tudi principi delovanja radarja z umetno odprtino, načini zajema podatkov ter osnove interferometrije V prvem sklopu magistrskega dela, je bil cilj predlagati metodo za zaznavo gozdne površine v slikah SAR. V drugem delu so bile s pomočjo SAR interferometrije zaznane spremembe na kroni gozdov v okolici Postojne. Slike SAR, so bile zajete v raz...

  14. High resolution SAR applications and instrument design

    Science.gov (United States)

    Dionisio, C.; Torre, A.

    1993-01-01

    The Synthetic Aperture Radar (SAR) has viewed, in the last two years, a huge increment of interest from many preset and potential users. The good spatial resolution associated to the all weather capability lead to considering SAR not only a scientific instrument but a tool for verifying and controlling the daily human relationships with the Earth Environment. New missions were identified for SAR as spatial resolution became lower than three meters: disasters, pollution, ships traffic, volcanic eruptions, earthquake effect are only a few of the possible objects which can be effectively detected, controlled and monitored by SAR mounted on satellites. High resolution radar design constraints and dimensioning are discussed.

  15. The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus.

    Science.gov (United States)

    McDermott, Jason E; Mitchell, Hugh D; Gralinski, Lisa E; Eisfeld, Amie J; Josset, Laurence; Bankhead, Armand; Neumann, Gabriele; Tilton, Susan C; Schäfer, Alexandra; Li, Chengjun; Fan, Shufang; McWeeney, Shannon; Baric, Ralph S; Katze, Michael G; Waters, Katrina M

    2016-09-23

    The complex interplay between viral replication and host immune response during infection remains poorly understood. While many viruses are known to employ anti-immune strategies to facilitate their replication, highly pathogenic virus infections can also cause an excessive immune response that exacerbates, rather than reduces pathogenicity. To investigate this dichotomy in severe acute respiratory syndrome coronavirus (SARS-CoV), we developed a transcriptional network model of SARS-CoV infection in mice and used the model to prioritize candidate regulatory targets for further investigation. We validated our predictions in 18 different knockout (KO) mouse strains, showing that network topology provides significant predictive power to identify genes that are important for viral infection. We identified a novel player in the immune response to virus infection, Kepi, an inhibitory subunit of the protein phosphatase 1 (PP1) complex, which protects against SARS-CoV pathogenesis. We also found that receptors for the proinflammatory cytokine tumor necrosis factor alpha (TNFα) promote pathogenesis, presumably through excessive inflammation. The current study provides validation of network modeling approaches for identifying important players in virus infection pathogenesis, and a step forward in understanding the host response to an important infectious disease. The results presented here suggest the role of Kepi in the host response to SARS-CoV, as well as inflammatory activity driving pathogenesis through TNFα signaling in SARS-CoV infections. Though we have reported the utility of this approach in bacterial and cell culture studies previously, this is the first comprehensive study to confirm that network topology can be used to predict phenotypes in mice with experimental validation.

  16. Three-dimensional surface reconstruction from multistatic SAR images.

    Science.gov (United States)

    Rigling, Brian D; Moses, Randolph L

    2005-08-01

    This paper discusses reconstruction of three-dimensional surfaces from multiple bistatic synthetic aperture radar (SAR) images. Techniques for surface reconstruction from multiple monostatic SAR images already exist, including interferometric processing and stereo SAR. We generalize these methods to obtain algorithms for bistatic interferometric SAR and bistatic stereo SAR. We also propose a framework for predicting the performance of our multistatic stereo SAR algorithm, and, from this framework, we suggest a metric for use in planning strategic deployment of multistatic assets.

  17. InfoTerra/TerraSAR initiative

    Science.gov (United States)

    Wahl, Manfred W.

    2004-01-01

    The overarching goal of the InfoTerra/TerraSAR Initiative is to establish a self-sustaining operational/commercial business built on Europe"s know-how and experience in space-borne Synthetic Aperture Radar (SAR) technology, in SAR data processing as well as in SAR applications. InfoTerra stands for a new business concept based on supplying innovative geo-information products and services. TerraSAR is a space and ground system conceived to consist of an initial deployment and operation of 2 Radar satellites (one in X- and one in L-band) flying in a tandem configuration in the same orbit. The design of TerraSAR is driven by the market and is user-oriented. TerraSAR is key to capturing a significant proportion of the existing market and to opening new market opportunities, when it becomes operational. The InfoTerra/TerraSAR Initiative has evolved gradually. It started in 1997 as a joint venture between German (DSS) and British (MMS-UK) space industry, strongly supported by both space agencies, DLR and BNSC. In early 2001, DLR and BNSC submitted to ESA the Formal Programme Proposal for InfoTerra/TerraSAR to become an essential element of ESA"s Earth Watch Programme. In summer 2001, when it became evident that there was not yet sufficient support from the ESA Member States to allow immediate start entering into TerraSAR Phase C/D, it has been decided to implement first a TerraSAR consolidation phase. In early 2002, in order to avoid further delays, a contract was signed between DLR and Astrium GmbH on the development of one component of TerraSAR, the TerraSAR-X, in the frame of a national programme, governed by a Public Private Partnership Agreement. Even if now the different launch dates for TerraSAR-X and TerraSAR-L are narrowing down the window of common data acquisition, it is a reasonable starting point, but it should always be kept in mind that the utmost goal for the longterm is to achieve self sustainability by supplying geo-information products and services

  18. Infections

    Directory of Open Access Journals (Sweden)

    Virginia Vanzzini Zago

    2012-01-01

    Full Text Available This is a retrospective, and descriptive study about the support that the laboratory of microbiology aids can provide in the diagnosis of ocular infections in patients whom were attended a tertiary-care hospital in México City in a 10-year-time period. We describe the microbiological diagnosis in palpebral mycose; in keratitis caused by Fusarium, Aspergillus, Candida, and melanized fungi; endophthalmitis; one Histoplasma scleritis and one mucormycosis. Nowadays, ocular fungal infections are more often diagnosed, because there is more clinical suspicion and there are easy laboratory confirmations. Correct diagnosis is important because an early medical treatment gives a better prognosis for visual acuity. In some cases, fungal infections are misdiagnosed and the antifungal treatment is delayed.

  19. Transmission characteristics of MERS and SARS in the healthcare setting: a comparative study.

    Science.gov (United States)

    Chowell, Gerardo; Abdirizak, Fatima; Lee, Sunmi; Lee, Jonggul; Jung, Eunok; Nishiura, Hiroshi; Viboud, Cécile

    2015-09-03

    highly across individual hospital outbreaks (Kruskal-Wallis test; P SARS. Simulations indicate a 2-fold higher probability of occurrence of large outbreaks (>100 cases) for SARS than MERS (2 % versus 1 %); however, owing to higher transmission heterogeneity, the largest outbreaks of MERS are characterized by sharper incidence peaks. The probability of occurrence of MERS outbreaks larger than the South Korean cluster (n = 186) is of the order of 1 %. Our study suggests that the South Korean outbreak followed a similar progression to previously described hospital clusters involving coronaviruses, with early super-spreading events generating a disproportionately large number of secondary infections, and the transmission potential diminishing greatly in subsequent generations. Differences in relative exposure patterns and transmission heterogeneity of MERS and SARS could point to changes in hospital practices since 2003 or differences in transmission mechanisms of these coronaviruses.

  20. Modeling and public health emergency responses: lessons from SARS.

    Science.gov (United States)

    Glasser, John W; Hupert, Nathaniel; McCauley, Mary M; Hatchett, Richard

    2011-03-01

    Modelers published thoughtful articles after the 2003 SARS crisis, but had limited if any real-time impact on the global response and may even have inadvertently contributed to a lingering misunderstanding of the means by which the epidemic was controlled. The impact of any intervention depends on its efficiency as well as efficacy, and efficient isolation of infected individuals before they become symptomatic is difficult to imagine. Nonetheless, in exploring the possible impact of quarantine, the product of efficiency and efficacy was varied over the entire unit interval. Another mistake was repeatedly fitting otherwise appropriate gamma distributions to times to event regardless of whether they were stationary or not, particularly onset-isolation intervals whose progressive reduction evidently contributed to SARS control. By virtue of their unknown biology, newly-emerging diseases are more challenging than familiar human scourges. Influenza, for example, recurs annually and has been modeled more thoroughly than any other infectious disease. Moreover, models were integrated into preparedness exercises, during which working relationships were established that bore fruit during the 2009 A/H1N1 pandemic. To provide the most accurate and timely advice possible, especially about the possible impact of measures designed to control diseases caused by novel human pathogens, we must appreciate the value and difficulty of policy-oriented modeling. Effective communication of insights gleaned from modeling SARS will help to ensure that policymakers involve modelers in future outbreaks of newly-emerging infectious diseases. Accordingly, we illustrate the increasingly timely care-seeking by which, together with increasingly accurate diagnoses and effective isolation, SARS was controlled via heuristic arguments and descriptive analyses of familiar observations.

  1. PHARUS: Airborne SAR Development in the Netherlands

    NARCIS (Netherlands)

    Hoogeboom, P.; Koomen, P.J.; Snoeij, P.; Pouwels, H.

    1992-01-01

    The PHARUS project (PHARUS stands for Phased Array Universal SAR) aims for a polarimetric C-band aircraft SAR that will be finalized in 1994. The system will make use of a phased array antenna with solid state amplifiers. The project consists of two phases, a definition phase and a realization

  2. PHARUS: Airborne SAR Development in the Netherlands

    NARCIS (Netherlands)

    Hoogeboom, P.; Koomen, P.J.; Snoeij, P.; Pouwels, H.

    1992-01-01

    The PHARUS project (PHARUS stands for Phased Array Universal SAR) aims for a polarimetric C-band aircraft SAR that will be finalized in 1994. The system will make use of a phased array antenna with solid state amplifiers. The project consists of two phases, a definition phase and a realization phase

  3. Advanced antennas for SAR spacecraft

    Science.gov (United States)

    Gail, William B.

    1993-01-01

    Single and multi-frequency antenna concepts were developed to evaluate the feasibility of building large aperture polarimetric synthetic aperture radar (SAR) systems to be launched in low cost vehicles such as the Delta 2. The antennas are 18.9 m long by 2.6 m wide (L-band) and achieve single polarization imaging to an incidence angle of 55 degrees and dual/quad imaging to 42 degrees. When combined with strawman spacecraft designs, both concepts meet the mass and volume constraints imposed by a Delta 2 launch.

  4. The SARS-coronavirus papain-like protease: structure, function and inhibition by designed antiviral compounds.

    Science.gov (United States)

    Báez-Santos, Yahira M; St John, Sarah E; Mesecar, Andrew D

    2015-03-01

    Over 10 years have passed since the deadly human coronavirus that causes severe acute respiratory syndrome (SARS-CoV) emerged from the Guangdong Province of China. Despite the fact that the SARS-CoV pandemic infected over 8500 individuals, claimed over 800 lives and cost billions of dollars in economic loss worldwide, there still are no clinically approved antiviral drugs, vaccines or monoclonal antibody therapies to treat SARS-CoV infections. The recent emergence of the deadly human coronavirus that causes Middle East respiratory syndrome (MERS-CoV) is a sobering reminder that new and deadly coronaviruses can emerge at any time with the potential to become pandemics. Therefore, the continued development of therapeutic and prophylactic countermeasures to potentially deadly coronaviruses is warranted. The coronaviral proteases, papain-like protease (PLpro) and 3C-like protease (3CLpro), are attractive antiviral drug targets because they are essential for coronaviral replication. Although the primary function of PLpro and 3CLpro are to process the viral polyprotein in a coordinated manner, PLpro has the additional function of stripping ubiquitin and ISG15 from host-cell proteins to aid coronaviruses in their evasion of the host innate immune responses. Therefore, targeting PLpro with antiviral drugs may have an advantage in not only inhibiting viral replication but also inhibiting the dysregulation of signaling cascades in infected cells that may lead to cell death in surrounding, uninfected cells. This review provides an up-to-date discussion on the SARS-CoV papain-like protease including a brief overview of the SARS-CoV genome and replication followed by a more in-depth discussion on the structure and catalytic mechanism of SARS-CoV PLpro, the multiple cellular functions of SARS-CoV PLpro, the inhibition of SARS-CoV PLpro by small molecule inhibitors, and the prospect of inhibiting papain-like protease from other coronaviruses. This paper forms part of a series of

  5. SAR processing using SHARC signal processing systems

    Science.gov (United States)

    Huxtable, Barton D.; Jackson, Christopher R.; Skaron, Steve A.

    1998-09-01

    Synthetic aperture radar (SAR) is uniquely suited to help solve the Search and Rescue problem since it can be utilized either day or night and through both dense fog or thick cloud cover. Other papers in this session, and in this session in 1997, describe the various SAR image processing algorithms that are being developed and evaluated within the Search and Rescue Program. All of these approaches to using SAR data require substantial amounts of digital signal processing: for the SAR image formation, and possibly for the subsequent image processing. In recognition of the demanding processing that will be required for an operational Search and Rescue Data Processing System (SARDPS), NASA/Goddard Space Flight Center and NASA/Stennis Space Center are conducting a technology demonstration utilizing SHARC multi-chip modules from Boeing to perform SAR image formation processing.

  6. Composite SAR imaging using sequential joint sparsity

    Science.gov (United States)

    Sanders, Toby; Gelb, Anne; Platte, Rodrigo B.

    2017-06-01

    This paper investigates accurate and efficient ℓ1 regularization methods for generating synthetic aperture radar (SAR) images. Although ℓ1 regularization algorithms are already employed in SAR imaging, practical and efficient implementation in terms of real time imaging remain a challenge. Here we demonstrate that fast numerical operators can be used to robustly implement ℓ1 regularization methods that are as or more efficient than traditional approaches such as back projection, while providing superior image quality. In particular, we develop a sequential joint sparsity model for composite SAR imaging which naturally combines the joint sparsity methodology with composite SAR. Our technique, which can be implemented using standard, fractional, or higher order total variation regularization, is able to reduce the effects of speckle and other noisy artifacts with little additional computational cost. Finally we show that generalizing total variation regularization to non-integer and higher orders provides improved flexibility and robustness for SAR imaging.

  7. Different residues in the SARS-CoV spike protein determine cleavage and activation by the host cell protease TMPRSS2.

    Science.gov (United States)

    Reinke, Lennart Michel; Spiegel, Martin; Plegge, Teresa; Hartleib, Anika; Nehlmeier, Inga; Gierer, Stefanie; Hoffmann, Markus; Hofmann-Winkler, Heike; Winkler, Michael; Pöhlmann, Stefan

    2017-01-01

    The spike (S) protein of severe acute respiratory syndrome coronavirus (SARS-CoV) mediates viral entry into target cells. Cleavage and activation of SARS S by a host cell protease is essential for infectious viral entry and the responsible enzymes are potential targets for antiviral intervention. The type II transmembrane serine protease TMPRSS2 cleaves and activates SARS S in cell culture and potentially also in the infected host. Here, we investigated which determinants in SARS S control cleavage and activation by TMPRSS2. We found that SARS S residue R667, a previously identified trypsin cleavage site, is also required for S protein cleavage by TMPRSS2. The cleavage fragments produced by trypsin and TMPRSS2 differed in their decoration with N-glycans, suggesting that these proteases cleave different SARS S glycoforms. Although R667 was required for SARS S cleavage by TMPRSS2, this residue was dispensable for TMPRSS2-mediated S protein activation. Conversely, residue R797, previously reported to be required for SARS S activation by trypsin, was dispensable for S protein cleavage but required for S protein activation by TMPRSS2. Collectively, these results show that different residues in SARS S control cleavage and activation by TMPRSS2, suggesting that these processes are more complex than initially appreciated.

  8. Human LINE1 endonuclease domain as a putative target of SARS-associated autoantibodies involved in the pathogenesis of severe acute respiratory syndrome

    Institute of Scientific and Technical Information of China (English)

    HE Wei-ping; SHU Cui-li; LI Bo-an; ZHAO Jun; CHENG Yun

    2008-01-01

    Background Severe acute respiratory syndrome(SARS)is a disease with a mortality of 9.56%.Although SARS is etiologically linked to a new coronavirus(SARS-CoV)and functional cell receptor has been identified,the pathogenesis of the virus infection is largely unclear.Methods The clinical specimens were processed and analyzed using an indirect enzyme-linked immunosorbent assay (ELISA) in-house.Further investigations of target antigen included reviews of phage display technique,rapid amplification of cDNA ends(RACE)technique,protein expression and purification,Western blotting validation,serological and immunohistochemical staining in postmortem tissue.Results A type of medium or low titer anti-lung tissue antibodies were found in the sera of SARS patients at the early stage of the disease.Human long interspersed nuclear element 1(LINE1)gene endonuclease(EN)domain protein was one of the target autoantigens and it was aberrantly expressed in the lung tissue of SARS patients.Anti-EN antibody was positive in the sera of 40.9% of SARS patients.Conclusions Human LINE1 endonuclease domain was identified as a putative target of SARS-associated autoantibodies,which were presented in the serum of SARS patients and may be involved in the pathogenesis of SARS.

  9. AVALIAÇÃO DA FORÇA DE RETENÇÃO DE COMPOSTOS ORGÂNICOS (COV EM NANOESTRUTURAS DE CARBONO “CUP STACKED”

    Directory of Open Access Journals (Sweden)

    Waldir Nagel Schirmer

    2009-01-01

    Full Text Available Adsorventes carbonados estão entre as melhores opções na remoção de compostos orgânicos voláteis (COV de correntes gasosas, pela boa afinidade que apresentam com compostos dessa natureza, além de baixo custo e disponibilidade. O presente trabalho avalia o desempenho do ciclo adsorção/dessorção de dois compostos orgânicos voláteis (fenol e tolueno em nanotubos de carbono (NTC comparativamente a um carbono grafitizado de aplicação tipicamente analítica (Carbotrap. As metodologias de amostragem e análise empregadas compreendem a coleta de gases por bombeamento (amostragem ativa em cartuchos (tubos, contendo o material adsorvente com posterior análise por cromatografia gasosa e espectrometria de massa (CG/EM, de acordo com o Método TO-17 da USEPA. Em relação ao desempenho dos adsorventes, o nanotubo obteve clara vantagem em relação ao Carbotrap, conseguindo reter mais adsorbato por massa de adsorvente. Além disso, não foi verificada interação diferenciada do fenol e tolueno com os dois adsorventes, tanto na etapa de adsorção quanto na de dessorção.

  10. AVALIAÇÃO DA FORÇA DE RETENÇÃO DE COMPOSTOS ORGÂNICOS (COV EM NANOESTRUTURAS DE CARBONO “CUP STACKED”

    Directory of Open Access Journals (Sweden)

    Waldir Nagel Schirmer

    2008-12-01

    Full Text Available Adsorventes carbonados estão entre as melhores opções na remoção de compostos orgânicos voláteis (COV de correntes gasosas,pela boa afinidade que apresentam com compostos dessa natureza, além de baixo custo e disponibilidade. O presente trabalhoavalia o desempenho do ciclo adsorção/dessorção de dois compostos orgânicos voláteis (fenol e tolueno em nanotubos de carbono(NTC comparativamente a um carbono grafitizado de aplicação tipicamente analítica (Carbotrap. As metodologias deamostragem e análise empregadas compreendem a coleta de gases por bombeamento (amostragem ativa em cartuchos (tubos,contendo o material adsorvente com posterior análise por cromatografia gasosa e espectrometria de massa (CG/EM, de acordocom o Método TO-17 da USEPA. Em relação ao desempenho dos adsorventes, o nanotubo obteve clara vantagem em relação aoCarbotrap, conseguindo reter mais adsorbato por massa de adsorvente. Além disso, não foi verificada interação diferenciada dofenol e tolueno com os dois adsorventes, tanto na etapa de adsorção quanto na de dessorção.

  11. Soy promotes juvenile granulosa cell tumor development in mice and in the human granulosa cell tumor-derived COV434 cell line.

    Science.gov (United States)

    Mansouri-Attia, Nadéra; James, Rebecca; Ligon, Alysse; Li, Xiaohui; Pangas, Stephanie A

    2014-10-01

    Soy attracts attention for its health benefits, such as lowering cholesterol or preventing breast and colon cancer. Soybeans contain isoflavones, which act as phytoestrogens. Even though isoflavones have beneficial health effects, a role for isoflavones in the initiation and progression of diseases including cancer is becoming increasingly recognized. While data from rodent studies suggest that neonatal exposure to genistein (the predominant isoflavone in soy) disrupts normal reproductive function, its role in ovarian cancers, particularly granulosa cell tumors (GCT), is largely unknown. Our study aimed to define the contribution of a soy diet in GCT development using a genetically modified mouse model for juvenile GCTs (JGCT; Smad1 Smad5 conditional double knockout mice) as well as a human JGCT cell line (COV434). While dietary soy cannot initiate JGCT development in mice, we show that it has dramatic effects on GCT growth and tumor progression compared to a soy-free diet. Loss of Smad1 and Smad5 alters estrogen receptor alpha (Esr1) expression in granulosa cells, perhaps sensitizing the cells to the effects of genistein. In addition, we found that genistein modulates estrogen receptor expression in the human JGCT cell line and positively promotes cell growth in part by suppressing caspase-dependent apoptosis. Combined, our work suggests that dietary soy consumption has deleterious effects on GCT development.

  12. Message concerning Severe Acute Respiratory Syndrome ("SARS")

    CERN Multimedia

    2003-01-01

    IMPORTANT REMINDER If you have just come back from one of the regions identified by the WHO as being infected with SARS, it is essential to monitor your state of health for ten days after your return. The syndrome manifests itself in the rapid onset of a high fever combined with respiratory problems (coughing, breathlessness, breathing difficulty). Should these signs appear, you must contact the CERN Medical Service as quickly as possible on number 73802 or 73186 during normal working hours, and the fire brigade at all other times on number 74444, indicating that you have just returned from one of the WHO-identified areas with recent local transmission.China: Beijing, Hong Kong (Special Administrative Region), Guangdong Province, Inner Mongolia, Shanxi Province, Tianjin ProvinceTaiwan:TaipeiMoreover, until further notice the CERN Management requests that all trips to these various regions of the world be reduced to a strict minimum and then only with the consent of the Division Leader concerned. Anyone comin...

  13. Infection

    Science.gov (United States)

    2010-09-01

    Interactions between biofilms and the environment. FEMS Microbiol Rev. 1997;20:291–303. 4. Webb LX, Wagner W, Carroll D, et al. Osteomyelitis and...treatment of osteomyelitis . Biomed Mater. 2008;3: 034114. 6. Gristina AG. Biomaterial-centered infection: microbial adhesion versus tissue integration...vertebral osteomyelitis . Spine. 2007;32: 2996–3006. 15. Beckham JD, Tuttle K, Tyler KL. Reovirus activates transforming growth factor ß and bone

  14. Extraordinary GU-rich single-strand RNA identified from SARS coronavirus contributes an excessive innate immune response.

    Science.gov (United States)

    Li, Yan; Chen, Ming; Cao, Hongwei; Zhu, Yuanfeng; Zheng, Jiang; Zhou, Hong

    2013-02-01

    A dangerous cytokine storm occurs in the SARS involving in immune disorder, but many aspects of the pathogenetic mechanism remain obscure since its outbreak. To deeply reveal the interaction of host and SARS-CoV, based on the basic structural feature of pathogen-associated molecular pattern, we created a new bioinformatics method for searching potential pathogenic molecules and identified a set of SARS-CoV specific GU-rich ssRNA fragments with a high-density distribution in the genome. In vitro experiments, the result showed the representative SARS-CoV ssRNAs had powerful immunostimulatory activities to induce considerable level of pro-inflammatory cytokine TNF-a, IL-6 and IL-12 release via the TLR7 and TLR8, almost 2-fold higher than the strong stimulatory ssRNA40 that was found previously from other virus. Moreover, SARS-CoV ssRNA was able to cause acute lung injury in mice with a high mortality rate in vivo experiment. It suggests that SARS-CoV specific GU-rich ssRNA plays a very important role in the cytokine storm associated with a dysregulation of the innate immunity. This study not only presents new evidence about the immunopathologic damage caused by overactive inflammation during the SARS-CoV infection, but also provides a useful clue for a new therapeutic strategy. Copyright © 2012 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

  15. Development of a single nucleotide polymorphism DNA microarray for the detection and genotyping of the SARS coronavirus.

    Science.gov (United States)

    Guo, Xi; Geng, Peng; Wang, Quan; Cao, Boyang; Liu, Bin

    2014-10-01

    Severe acute respiratory syndrome (SARS), a disease that spread widely in the world during late 2002 to 2004, severely threatened public health. Although there have been no reported infections since 2004, the extremely pathogenic SARS coronavirus (SARS-CoV), as the causative agent of SARS, has recently been identified in animals, showing the potential for the re-emergence of this disease. Previous studies showed that 27 single nucleotide polymorphism (SNP) mutations among the spike (S) gene of this virus are correlated closely with the SARS pathogenicity and epidemicity. We have developed a SNP DNA microarray in order to detect and genotype these SNPs, and to obtain related information on the pathogenicity and epidemicity of a given strain. The microarray was hybridized with PCR products amplified from cDNAs obtained from different SARS-CoV strains. We were able to detect 24 SNPs and determine the type of a given strain. The hybridization profile showed that 19 samples were detected and genotyped correctly by using our microarray, with 100% accuracy. Our microarray provides a novel method for the detection and epidemiological surveillance of SARS-CoV.

  16. Validation of burst overlapping for ALOS-2 PALSAR-2 ScanSAR-ScanSAR interferometry

    Science.gov (United States)

    Natsuaki, Ryo; Motohka, Takeshi; Ohki, Masato; Watanabe, Manabu; Suzuki, Shinichi

    2016-10-01

    The Phased Array type L-band Synthetic Aperture Radar-2 (PALSAR-2) aboard the Advanced Land Observing Satellite- 2 (ALOS-2, "DAICHI-2") is the latest L-band spaceborne synthetic aperture radar (SAR). PALSAR-2 observes the world mainly with 10 m resolution / 70 km swath Stripmap mode and 25 m resolution / 350 km swath ScanSAR mode. The 3-m resolution Stripmap mode is mainly used upon Japan. 350 km ScanSAR observation could detect large scale deformation e.g., the Mw 7.8 Gorkha, Nepal earthquake and its aftershocks in 2015. ALOS-2 ScanSAR is the first one that supports ScanSAR-ScanSAR interferometry in L-band spaceborne SAR. However, because of the parameter setting error for the orbit estimation, ALOS-2 PALSAR-2 ScanSAR could achieve little number of interferometric pair until the software modification on February 8, 2015. That is, the burst overlap timing required for the interferometric analysis was insufficient and it depends on the observation date. In this paper, we report the investigation results of this case and discuss the current status of the ALOS-2 ScanSAR InSAR. Some archives achieved before February 8, 2015 can be used for interferometric analysis with after Feb. 8. However, most of them have no interferometric pair. We also report that the archives acquired after February 8, have enough burst overlapping.

  17. Updated progress in theories and applications of spaceborne SAR interferometry

    Science.gov (United States)

    Chen, Yan-Ling; Huang, Cheng; Ding, Xiao-Li; Li, Zhi-Wei

    2006-12-01

    InSAR (Interferometric Synthetic Aperture Radar) and D-InSAR (Differential InSAR) are rapidly developed new technologies of space geodesy during the late 20th century, and now obviously become hot research topics in the field of microwave remote sensing. Compared with the other sensors, InSAR possesses many incomparable advantages such as the capability to work at all-time and under all weather, very high spatial resolution and strong penetrability through the ground surface. This paper introduces general status of SAR, InSAR, D-InSAR technology, and the principles of InSAR and D-InSAR. New theories and the potential problems of (D-)InSAR technology are largely discussed, including multi-baseline interferometry, Pol-InSAR technique, the correction of atmospheric effects, permanent Scatterers method, the synthesization technique between InSAR and GPS, LIDAR etc., and the InSAR parallel algorithm. Then the new applications of InSAR and D-InSAR are described in detail including 3D topographic mapping, deformation monitoring (including surface subsidence, landside monitoring and ITRF's foundation and maintenance, etc.), thematic mapping (including agriculture and forestry, oceanic surveying and flood monitoring, etc.) and meteorology etc.. Finally, the prospect and future trends in InSAR development are summarized.

  18. SARS (SEVERE ACUTE RESPIRATORY SYNDROME – A NEW CHALLENGE FOR THE MANKIND

    Directory of Open Access Journals (Sweden)

    Andrej Trampuž

    2003-07-01

    Full Text Available Background. SARS (severe acute respiratory syndrome is a recently recognized new infectious respiratory illness, which first appeared in southern China in November 2002, and has since then within months spread to 29 countries. In total, 8437 cases and 813 deaths occurred (situation as of August 1, 2003. SARS is caused by a novel coronavirus that is primarily spread by large droplet transmission, less commonly by surface contamination or by air (airborne. Around half of the infected were health care workers; the majority of cases acquired the infection in the hospital.Conclusions. Incubation period of SARS is 2 to 10 days. Early manifestations include fever, myalgia, and headache, followed 2 to 4 days later by cough, shortness of breath, and diarrhea. In 10–20% of patients, tracheal intubation and mechanical ventilation is required. Case-fatality is approximately 15%, in patients aged 60 years or older may be higher than 40%. There is no specific therapy or vaccine, and management consists of supportive care. This article summarizes updated information regarding epidemiology, clinical features, etiologic agent, modes of transmission of the disease, and infection control measures to contain SARS.

  19. The Role of Severe Acute Respiratory Syndrome (SARS)-Coronavirus Accessory Proteins in Virus Pathogenesis

    Science.gov (United States)

    McBride, Ruth; Fielding, Burtram C.

    2012-01-01

    A respiratory disease caused by a novel coronavirus, termed the severe acute respiratory syndrome coronavirus (SARS-CoV), was first reported in China in late 2002. The subsequent efficient human-to-human transmission of this virus eventually affected more than 30 countries worldwide, resulting in a mortality rate of ~10% of infected individuals. The spread of the virus was ultimately controlled by isolation of infected individuals and there has been no infections reported since April 2004. However, the natural reservoir of the virus was never identified and it is not known if this virus will re-emerge and, therefore, research on this virus continues. The SARS-CoV genome is about 30 kb in length and is predicted to contain 14 functional open reading frames (ORFs). The genome encodes for proteins that are homologous to known coronavirus proteins, such as the replicase proteins (ORFs 1a and 1b) and the four major structural proteins: nucleocapsid (N), spike (S), membrane (M) and envelope (E). SARS-CoV also encodes for eight unique proteins, called accessory proteins, with no known homologues. This review will summarize the current knowledge on SARS-CoV accessory proteins and will include: (i) expression and processing; (ii) the effects on cellular processes; and (iii) functional studies. PMID:23202509

  20. Antenna motion errors in bistatic SAR imagery

    Science.gov (United States)

    Wang, Ling; Yazıcı, Birsen; Cagri Yanik, H.

    2015-06-01

    Antenna trajectory or motion errors are pervasive in synthetic aperture radar (SAR) imaging. Motion errors typically result in smearing and positioning errors in SAR images. Understanding the relationship between the trajectory errors and position errors in reconstructed images is essential in forming focused SAR images. Existing studies on the effect of antenna motion errors are limited to certain geometries, trajectory error models or monostatic SAR configuration. In this paper, we present an analysis of position errors in bistatic SAR imagery due to antenna motion errors. Bistatic SAR imagery is becoming increasingly important in the context of passive imaging and multi-sensor imaging. Our analysis provides an explicit quantitative relationship between the trajectory errors and the positioning errors in bistatic SAR images. The analysis is applicable to arbitrary trajectory errors and arbitrary imaging geometries including wide apertures and large scenes. We present extensive numerical simulations to validate the analysis and to illustrate the results in commonly used bistatic configurations and certain trajectory error models.

  1. SARS - infectious disease of 21st century

    Directory of Open Access Journals (Sweden)

    Tjandra Y. Aditama

    2005-03-01

    Full Text Available Severe acute respiratory syndrome (SARS is an emerging viral infectious disease. According to the World Health Organization, a suspected case of SARS is defined as documented fever (temperature >38°C, lower respiratory tract symptoms, and contact with a person believed to have had SARS or history of travel to an area of documented transmission. A probable case is a suspected case with chest radiographic findings of pneumonia, acute respiratory distress syndrome (ARDS, or an unexplained respiratory illness resulting in death, with autopsy findings of ARDS without identifiable cause. In this article some SARS epidemiological data in Indonesia will also presented. There are 7 SARS suspected cases and 2 probable cases were registered in Indonesia on the period of 1 March to 9 July 2003, and no more cases were reported after that time. How will be SARS progression in the future will be a subject of discussion among scientist, and we will have to wait and be prepared for any development might occur. (Med J Indones 2005; 14: 59-63Keywords: SARS, Case Definition, Etiology, Indonesia

  2. From SARS to MERS: 10 years of research on highly pathogenic human coronaviruses.

    Science.gov (United States)

    Hilgenfeld, Rolf; Peiris, Malik

    2013-10-01

    This article introduces a series of invited papers in Antiviral Research marking the 10th anniversary of the outbreak of severe acute respiratory syndrome (SARS), caused by a novel coronavirus that emerged in southern China in late 2002. Until that time, coronaviruses had not been recognized as agents causing severe disease in humans, hence, the emergence of the SARS-CoV came as a complete surprise. Research during the past ten years has revealed the existence of a diverse pool of coronaviruses circulating among various bat species and other animals, suggesting that further introductions of highly pathogenic coronaviruses into the human population are not merely probable, but inevitable. The recent emergence of another coronavirus causing severe disease, Middle East respiratory syndrome (MERS), in humans, has made it clear that coronaviruses pose a major threat to human health, and that more research is urgently needed to elucidate their replication mechanisms, identify potential drug targets, and develop effective countermeasures. In this series, experts in many different aspects of coronavirus replication and disease will provide authoritative, up-to-date reviews of the following topics: - clinical management and infection control of SARS; - reservoir hosts of coronaviruses; - receptor recognition and cross-species transmission of SARS-CoV; - SARS-CoV evasion of innate immune responses; - structures and functions of individual coronaviral proteins; - anti-coronavirus drug discovery and development; and - the public health legacy of the SARS outbreak. Each article will be identified in the last line of its abstract as belonging to the series "From SARS to MERS: 10years of research on highly pathogenic human coronaviruses." Copyright © 2013 Elsevier B.V. All rights reserved.

  3. What will be Changed by SARS?%SARS改变了什么?

    Institute of Scientific and Technical Information of China (English)

    钱静; 杨沛奇

    2003-01-01

    The invisible SARS,instead of sand storm,attacked all of us in this spring.Because of SARS our customary and fixed life style is changed,in order to avoid being infected we wear gauze masks mostly,which also makes us lose the pleasure of face-to-face communication.Now the importance of internet and communication network becomes especially obvious.Telephone and internet help us to communicate as we used to do .Less and less people tend to go shopping.while shopping on-line becomes more and more prevalent.Many schools have to stop the classes because of SARS,but a lot of classrooms on-line are opened.

  4. Land Subsidence Monitoring Using PS-InSAR Technique for L-Band SAR Data

    Science.gov (United States)

    Thapa, S.; Chatterjee, R. S.; Singh, K. B.; Kumar, D.

    2016-10-01

    Differential SAR-Interferometry (D-InSAR) is one of the potential source to measure land surface motion induced due to underground coal mining. However, this technique has many limitation such as atmospheric in homogeneities, spatial de-correlation, and temporal decorrelation. Persistent Scatterer Interferometry synthetic aperture radar (PS-InSAR) belongs to a family of time series InSAR technique, which utilizes the properties of some of the stable natural and anthropogenic targets which remain coherent over long time period. In this study PS-InSAR technique has been used to monitor land subsidence over selected location of Jharia Coal field which has been correlated with the ground levelling measurement. This time series deformation observed using PS InSAR helped us to understand the nature of the ground surface deformation due to underground mining activity.

  5. Offshore wind mapping Mediterranean area using SAR

    DEFF Research Database (Denmark)

    Calaudi, Rosamaria; Arena, Felice; Badger, Merete;

    2013-01-01

    Satellite observations of the ocean surface, for example from Synthetic Aperture Radars (SAR), provide information about the spatial wind variability over large areas. This is of special interest in the Mediterranean Sea, where spatial wind information is only provided by sparse buoys, often...... with long periods of missing data. Here, we focus on evaluating the use of SAR for offshore wind mapping. Preliminary results from the analysis of SAR-based ocean winds in Mediterranean areas show interesting large scale wind flow features consistent with results from previous studies using numerical models...

  6. SAR ATR Based on Convolutional Neural Network

    Directory of Open Access Journals (Sweden)

    Tian Zhuangzhuang

    2016-06-01

    Full Text Available This study presents a new method of Synthetic Aperture Radar (SAR image target recognition based on a convolutional neural network. First, we introduce a class separability measure into the cost function to improve this network’s ability to distinguish between categories. Then, we extract SAR image features using the improved convolutional neural network and classify these features using a support vector machine. Experimental results using moving and stationary target acquisition and recognition SAR datasets prove the validity of this method.

  7. Geologic mapping in Greenland with polarimetric SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Madsen, Søren Nørvang; Brooks, C. K.

    1995-01-01

    The application of synthetic aperture radar (SAR) for geologic mapping in Greenland is investigated by the Danish Center for Remote Sensing (DCRS) in co-operation with the Danish Lithosphere Centre (DLC). In 1994 a pilot project was conducted in East Greenland. The Danish airborne SAR, EMISAR......, acquired fully polarimetric C-band data which, upon processing and calibration, was interpreted jointly by DCRS and DLC. Several geologic phenomena are readily identified in the SAR imagery, while different lithologies seem to be indistinguishable because they have similar geomorphologies. The geologic...

  8. Analysis of Resolution of Bistatic SAR

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In this paper, the spatial resolutions at different directions of bistatic synthetic aperture radar (BiSAR) have been derived from the ambiguity function. Compared with monostatic signal to noise ratio, BiSAR's resolutions of a fixed point target are varying with slow time since BiSAR system is space-variant. Constraints for the assumption of space-invariant bistatic topology are proposed in the paper. Moreover, under the assumption of invariance, the change of resolutions at different point in the image scene is taken into account, and we have specified two key parameters that affect resolutions directly and analyzed the way how they influence on the resolutions.

  9. Geometric calibration of ERS satellite SAR images

    DEFF Research Database (Denmark)

    Mohr, Johan Jacob; Madsen, Søren Nørvang

    2001-01-01

    Geometric calibration of the European Remote Sensing (ERS) Satellite synthetic aperture radar (SAR) slant range images is important in relation to mapping areas without ground reference points and also in relation to automated processing. The relevant SAR system parameters are discussed...... on a seven-year ERS-1 and a four-year ERS-2 time series, the long term stability is found to be sufficient to allow a single calibration covering the entire mission period. A descending and an ascending orbit tandem pair of the ESA calibration site on Flevoland, suitable for calibration of ERS SAR processors...

  10. SAR observations of coastal zone conditions

    Science.gov (United States)

    Meadows, G. A.; Kasischke, E. S.; Shuchman, R. A.

    1980-01-01

    Applications of Synthetic Aperture Radar (SAR) technology to the observation of coastal zones phenomena are detailed. The conditions observed include gravity wave detection, surf zone location, surface currents, and long-period 'surf beats'. Algorithms have been developed and successfully tested that determine significant wave and current parameters from the sea surface backscatter of microwave energy. Doppler information from the SAR optical correlator allows a rough estimation of near shore surface flow velocities that has been found in agreement with both theory and in situ observations as well. Seasat SAR data of the Scotland and North Carolina coasts are considered, as well as the results of bathymetric updating of coastal area charts.

  11. Applying Theory of Planned Behavior to Predict Nurses' Intention and Volunteering to Care for Sars Patients in Southern Taiwan

    Directory of Open Access Journals (Sweden)

    Nai-Ying Ko

    2004-08-01

    Full Text Available Severe acute respiratory syndrome (SARS spread worldwide after an outbreak in Guangdong Province, China, in mid-November 2002. Health care workers were at highest risk of infection. The purpose of this study, which was based on Ajzen's theory of planned behavior (TPB, was to determine the extent to which personal attitudes, subjective norms, and perceived control influence nurses' intention and volunteering to care for SARS patients. After the SARS outbreak, a total of 750 staff nurses (response rate 90% at one hospital completed a questionnaire assessing their intention to provide care to SARS patients. Overall, 42.7% of nurses had a positive intention to provide care to SARS patients, and 25.4% of nurses would volunteer to care for SARS patients. Four factors explaining 35% of the variance in nurses' intention to care for SARS patients were self-efficacy (β = 0.39, p < 0.001, attitude (β = 0.25, p < 0.001, years of working in the study hospital (β = −0.15, p < 0.001, and receiving resources from the hospital (β = 0.13, p < 0.001. Two factors explaining 15% of the variance in nurses' volunteering to care for SARS patients were intention (β = 0.31, p < 0.001 and attitude (β = 0.15, p < 0.001. The final model shows that the variables of the TPB contributed significantly to the explanation of a portion of variance in nurses' intention and volunteering to care for SARS patients. The results are helpful for human resources managers facing a new contagious disease.

  12. Bistatic Experiment Using TerraSAR-X and DLR’s new F-SAR System

    OpenAIRE

    Baumgartner, Stefan; Rodriguez-Cassolà, Marc; Nottensteiner, Anton; Horn, Ralf; Scheiber, Rolf; Steinbrecher, Ulrich; Metzig, Robert; Limbach, Markus; Mittermayer, Josef; Krieger, Gerhard; Moreira, Alberto; Schwerdt, Marco

    2008-01-01

    A bistatic X-band experiment was successfully performed early November 2007. TerraSAR-X was used as transmitter and DLR’s new airborne radar system F-SAR, which was programmed to acquire data in a quasi-continuous mode to avoid echo window synchronization issues, was used as bistatic receiver. Precise phase and time referencing between both systems, which is essential for obtaining high resolution SAR images, was derived during the bistatic processing. Hardware setup and performance analyses ...

  13. SAR-SIFT: A SIFT-LIKE ALGORITHM FOR SAR IMAGES

    OpenAIRE

    Dellinger, Flora; Delon, Julie; Gousseau, Yann; Michel, Julien; Tupin, Florence

    2015-01-01

    International audience; The Scale Invariant Feature Transform (SIFT) algorithm is widely used in computer vision to match features between images or to localize and recognize objets. However, mostly because of speckle noise, it does not perform well on synthetic aperture radar (SAR) images. We present here an improvement of this algorithm for SAR images, named SAR-SIFT. A new gradient computation, yielding an orientation and a magnitude robust to speckle noise, is first introduced. It is then...

  14. GRECO-SAR: An Orbital Polarimetric SAR Simulator of Deterministic Complex Targets for Vessel Classification Studies

    OpenAIRE

    Margarit Martín, Gerard; Mallorquí Franquet, Jordi Joan; Rius Casals, Juan Manuel; Sanz Marcos, Jesús

    2006-01-01

    This paper presents a synthetic aperture radar (SAR) simulator that is able to generate polarimetric SAR (POLSAR) and polarimetric inverse SAR data of complex targets. It solves the electromagnetic problem via high-frequency approximations, such as physical optics and the physical theory of diffraction, with notable computational efficiency. In principle, any orbital monostatic sensor working at any band, resolution, and operating mode can be modeled. To make simulations more realistic, the t...

  15. SARS-A Worldwide Threat

    Institute of Scientific and Technical Information of China (English)

    姜保华

    2003-01-01

    所谓SARS,即严重急性呼吸道综合症,是一种传染力很强的呼吸道疾病。这种新的疾病最先由世界卫生组织医生Carlo Urbani博士确诊,患者是一位48岁的商人,后来因该病而死亡。Urbani医生本人也因感染该病而于2003年3月29日去世,死时年仅46岁。在此期间,SARS开始蔓延。自SARS发现后的一个半月里,全球已有数千人被感染。

  16. Atmosphere Observations by Geosynchronous SARs

    Science.gov (United States)

    Monti guarnieri, Andrea; Rocca, Fabio; Wadge, Geoff; Schulz, Detlef

    2014-05-01

    We analyze different geosynchronous Synthetic Aperture RADAR concepts aimed to get both tropospheric and ionospheric delay maps with a revisit time of minutes and sub-continental coverage. Such products could be used either to compensate the delay in LEO-SAR missions and GNSS, or to generate integrated water-vapor maps to be used for Numerical Weather Forecast. The system exploits the principle of RADAR location, by transmitting a pulse with a suitable bandwidth, and the residual non-zero eccentricity of COMmunication SATellites. Different concepts are proposed as payload in COMSAT, or constellations of small satellites, that is monostatic or bistatic/multistatic RADARS. The selection of the best frequency, from L to Ku, and the analysis of performances is presented.

  17. Elevated plasma surfactant protein D (SP-D) levels and a direct correlation with anti-severe acute respiratory syndrome coronavirus-specific IgG antibody in SARS patients

    DEFF Research Database (Denmark)

    Wu, Y P; Liu, Z H; Wei, R

    2009-01-01

    Pulmonary SP-D is a defence lectin promoting clearance of viral infections. SP-D is recognized to bind the S protein of SARS-CoV and enhance phagocytosis. Moreover, systemic SP-D is widely used as a biomarker of alveolar integrity. We investigated the relation between plasma SP-D, SARS-type pneum...

  18. Advanced Antenna for Digital Beamforming SAR Project

    Data.gov (United States)

    National Aeronautics and Space Administration — Develop a wideband (500 MHz) L-band phased-array antenna for airborne Synthetic Aperture Radar (SAR) applications based on a novel approach that will make possible...

  19. Introduction to Synthetic Aperture Radar (SAR)

    Science.gov (United States)

    2006-09-01

    18 m L RADARSAT 1995 10 m × 9 m C ENVISAT 2002 25 m × 25 m C TerraSAR-X 2006 < 1 m × 1 m X Radarsat II 2005 3 m × 3 m C SAR-Lupe 2005 < 1 m...1 m X IGS-2b 2008 30 cm × 30 cm X Airborne SAR DOSAR 1989 < 1 m × 1 m S,C,X,Ka CARABAS- II 1997 3 m × 3 m VHF PAMIR 2003 10 cm × 10 cm X...Lynx 1999 10 cm × 10 cm Ku MISAR 2003 0.5 m × 0.5 m Ka RAMSES 1994 10 cm × 10 cm P,L,S,C,X,Ku,Ka,W MEMPHIS 1997 20 cm × 20 cm Ka,W E-SAR 1994 1.5

  20. Ionosphere correction algorithm for spaceborne SAR imaging

    Institute of Scientific and Technical Information of China (English)

    Lin Yang; Mengdao Xing; Guangcai Sun

    2016-01-01

    For spaceborne synthetic aperture radar (SAR) ima-ging, the dispersive ionosphere has significant effects on the pro-pagation of the low frequency (especial y P-band) radar signal. The ionospheric effects can be a significant source of the phase error in the radar signal, which causes a degeneration of the image quality in spaceborne SAR imaging system. The background ionospheric effects on spaceborne SAR through modeling and simulation are analyzed, and the qualitative and quantitative analysis based on the spatio-temporal variability of the ionosphere is given. A novel ionosphere correction algorithm (ICA) is proposed to deal with the ionospheric effects on the low frequency spaceborne SAR radar signal. With the proposed algorithm, the degradation of the image quality caused by the ionosphere is corrected. The simulation re-sults show the effectiveness of the proposed algorithm.

  1. Polarimetric SAR Interferometry Evaluation in Mangroves

    Science.gov (United States)

    Lee, Seung-Kuk; Fatoyinbo,Temilola; Osmanoglu, Batuhan; Sun, Guoqing

    2014-01-01

    TanDEM-X (TDX) enables to generate an interferometric coherence without temporal decorrelation effect that is the most critical factor for a successful Pol-InSAR inversion, as have recently been used for forest parameter retrieval. This paper presents mangrove forest height estimation only using single-pass/single-baseline/dual-polarization TDX data by means of new dual-Pol-InSAR inversion technique. To overcome a lack of one polarization in a conventional Pol- InSAR inversion (i.e. an underdetermined problem), the ground phase in the Pol-InSAR model is directly estimated from TDX interferograms assuming flat underlying topography in mangrove forest. The inversion result is validated against lidar measurement data (NASA's G-LiHT data).

  2. Progress in Circular SAR Imaging Technique

    Directory of Open Access Journals (Sweden)

    Hong Wen

    2012-06-01

    Full Text Available Circular SAR (CSAR is a newly developed all-directional high resolution 3D imaging mode in recent years, to satisfy the demand of finer observation. The National Key Laboratory of Science and Technology on Microwave Imaging, Institute of Electronics, Chinese Academy of Sciences (MITL, IECAS, had the first test flight experiment in Aug. 2011 with a P-band full polarization SAR system, and successfully obtained the all-directional high resolution circular SAR image. The initial results show that CSAR technique has the encouraging potential capability in the fields of high precision mapping, disaster evaluation, resource management and the other related applications. This paper firstly makes a detailed discussion on the progress of circular SAR imaging technique, which emphases on the several airborne experiments performed these years to show CSAR’s attractive features, then studies and illustrates the key techniques, and finally discusses the development trends.

  3. Cross-calibration of interferometric SAR data

    DEFF Research Database (Denmark)

    Dall, Jørgen

    2003-01-01

    Generation of digital elevation models from interferometric synthetic aperture radar (SAR) data is a well established technique. Achieving a high geometric fidelity calls for a calibration accounting for inaccurate navigation data and system parameters as well as system imperfections. Fully...

  4. Optimal Approach to SAR Image Despeckling

    Institute of Scientific and Technical Information of China (English)

    2002-01-01

    Speckle filtering of synthetic aperture radar (SAR) images while preserving the spatial signal variability (texture and fine structures) still remains a challenge. Many algorithms have been proposed for the SAR imagery despeckling. However,simulated annealing (SA) method is one of excellent choices currently. A critical problem in the study on SA is to provide appropriate cooling schedules that ensure fast convergence to near-optimal solutions. This paper gives a new necessary and sufficient condition for the cooling schedule so that the algorithm state converges in all probability to the set of globally minimum cost states.Moreover, it constructs an appropriate objective function for SAR image despeckling. An experimental result of the actual SAR image processing is obtained.

  5. Satellite sar detection of hurricane helene (2006)

    DEFF Research Database (Denmark)

    Ju, Lian; Cheng, Yongcun; Xu, Qing

    2013-01-01

    In this paper, the wind structure of hurricane Helene (2006) over the Atlantic Ocean is investigated from a C-band RADARSAT-1 synthetic aperture radar (SAR) image acquired on 20 September 2006. First, the characteristics, e.g., the center, scale and area of the hurricane eye (HE) are determined....... There is a good agreement between the SAR-estimated HE center location and the best track data from the National Hurricane Center. The wind speeds at 10 m above the ocean surface are also retrieved from the SAR data using the geophysical model function (GMF), CMOD5, and compared with in situ wind speed...... observations from the stepped frequency microwave radiometer (SFMR) on NOAA P3 aircraft. All the results show the capability of hurricane monitoring by satellite SAR. Copyright © 2013 by the International Society of Offshore and Polar Engineers (ISOPE)....

  6. On Bistatic Forward-looking SAR Imaging

    OpenAIRE

    Vu, Viet Thuy; Pettersson, Mats

    2014-01-01

    Left/right ambiguity and low angular (azimuth) resolution are severe problems for monostatic forward-looking SAR imaging. It is strongly believed that these technical issues can definitely be solved with bistatic forward-looking SAR. The analysis presented in this paper points out that the left/right ambiguity problem still exits. However, an appropriate selection of the position of bistatic base line and antenna beamwidth allows us to conceal it. The paper also gives some recommendations whi...

  7. Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice.

    Science.gov (United States)

    Gralinski, Lisa E; Menachery, Vineet D; Morgan, Andrew P; Totura, Allison L; Beall, Anne; Kocher, Jacob; Plante, Jessica; Harrison-Shostak, D Corinne; Schäfer, Alexandra; Pardo-Manuel de Villena, Fernando; Ferris, Martin T; Baric, Ralph S

    2017-06-07

    Host genetic variation is known to contribute to differential pathogenesis following infection. Mouse models allow direct assessment of host genetic factors responsible for susceptibility to Severe Acute Respiratory Syndrome coronavirus (SARS-CoV). Based on an assessment of early stage lines from the Collaborative Cross mouse multi-parent population, we identified two lines showing highly divergent susceptibilities to SARS-CoV: the resistant CC003/Unc and the susceptible CC053/Unc. We generated 264 F2 mice between these strains, and infected them with SARS-CoV. Weight loss, pulmonary hemorrhage, and viral load were all highly correlated disease phenotypes. We identified a quantitative trait locus of major effect on chromosome 18 (27.1-58.6 Mb) which affected weight loss, viral titer and hemorrhage. Additionally, each of these three phenotypes had distinct quantitative trait loci [Chr 9 (weight loss), Chrs 7 and 12 (virus titer), and Chr 15 (hemorrhage)]. We identified Ticam2, an adaptor protein in the TLR signaling pathways, as a candidate driving differential disease at the Chr 18 locus. Ticam2(-/-) mice were highly susceptible to SARS-CoV infection, exhibiting increased weight loss and more pulmonary hemorrhage than control mice. These results indicate a critical role for Ticam2 in SARS-CoV disease, and highlight the importance of host genetic variation in disease responses. Copyright © 2017 Gralinski et al.

  8. SARS: Key factors in crisis management.

    Science.gov (United States)

    Tseng, Hsin-Chao; Chen, Thai-Form; Chou, Shieu-Ming

    2005-03-01

    This study was conducted at a single hospital selected in Taipei during the SARS (Severe Acute Respiratory Syndrome) outbreak from March to July, 2003 in Taiwan. During this period of time, 104 SARS patients were admitted to the hospital. There were no negative reports related to the selected hospital despite its being located right in the center of an area struck by the epidemic. The purpose of this study was to identify the key factors enabling the hospital to survive SARS unscathed. Data were collected from in-depth interviews with the nursing directors and nursing managers of the SARS units, along with a review of relevant hospital documents. The five key elements identified as survival factors during this SARS crisis are as follows: 1. good control of timing for crisis management, 2. careful decision-making, 3. thorough implementation, 4. effective communication, and 5. trust between management and employees. The results of this study reconfirmed the selected hospital as a model for good crisis management during the SARS epidemic.

  9. Stability of SARS Coronavirus in Human Specimens and Environment and Its Sensitivity to Heating and UV Irradiation

    Institute of Scientific and Technical Information of China (English)

    SHU-MING DUAN; XIAO-PING DONG; SARS RESEARCH TEAM; XIN-SHENG ZHAO; RUI-FU WEN; JING-JING HUANG; GUO-HUA PI; SU-XIANG ZHANG; JUN HAN; SHENG-LI BI; LI RUAN

    2003-01-01

    The causal agent for SARS is considered as a novel coronavirus that has never been described both in human and animals previously. The stability of SARS coronavirus in human specimens and in environments was studied. Methods Using a SARS coronavirus strain CoV-P9,which was isolated from pharyngeal swab of a probable SARS case in Beijing, its stability in mimic human specimens and in mimic environment including surfaces of commonly used materials or in household conditions, as well as its resistances to temperature and UV irradiation were analyzed. A total of 106 TCID50 viruses were placed in each tested condition, and changes of the viral infectivity in samples after treatments were measured by evaluating cytopathic effect (CPE) in cell line Vero-E6 at 48 h after infectionn. Results The results showed that SARS coronavirus in the testing condition could survive in serum, 1:20 diluted sputum and feces for at least 96 h, whereas it could remain alive in urine for at least 72 h with a low level of infectivity. The survival abilities on the surfaces of eight different materials and in water were quite comparable, revealing reduction of infectivity after 72 to 96 h exposure. Viruses stayed stable at 4℃, at room temperature (20℃) and at 37℃ for at least 2 h without remarkable change in the infectious ability in cells, but were convened to be non-infectious after 90-, 60- and 30-min exposure at 56℃, at 67℃ and at 75℃, respectively. Irradiation of UV for 60 min on the virus in culture medium resulted in the destruction of viral infectivity at an undetectable level. Conclusion The survival ability of SARS coronavirus in human specimens and in environments seems to be relatively strong. Heating and UV irradiation can efficiently eliminate the viral infectivity.

  10. Development of animal models against emerging coronaviruses: From SARS to MERS coronavirus.

    Science.gov (United States)

    Sutton, Troy C; Subbarao, Kanta

    2015-05-01

    Two novel coronaviruses have emerged to cause severe disease in humans. While bats may be the primary reservoir for both viruses, SARS coronavirus (SARS-CoV) likely crossed into humans from civets in China, and MERS coronavirus (MERS-CoV) has been transmitted from camels in the Middle East. Unlike SARS-CoV that resolved within a year, continued introductions of MERS-CoV present an on-going public health threat. Animal models are needed to evaluate countermeasures against emerging viruses. With SARS-CoV, several animal species were permissive to infection. In contrast, most laboratory animals are refractory or only semi-permissive to infection with MERS-CoV. This host-range restriction is largely determined by sequence heterogeneity in the MERS-CoV receptor. We describe animal models developed to study coronaviruses, with a focus on host-range restriction at the level of the viral receptor and discuss approaches to consider in developing a model to evaluate countermeasures against MERS-CoV. Copyright © 2015. Published by Elsevier Inc.

  11. Anti-SARS virus antibody responses against human SARS-associated coronavirus and animal SARS-associated coronavirus-like virus

    Institute of Scientific and Technical Information of China (English)

    王鸣; 徐慧芳; 莫自耀; 郑伯健; 高阳; 顾菁; 秦鹏哲; 张周斌; 邹晓忠; 梁彩云; 赵宇腾; 高凯

    2004-01-01

    @@ Severe acute respiratory syndrome (SARS) is an infectious disease first recognized in November 2002 in Guangdong province, China. It was spread to many countries all over the world within a few months.1,2 By April 2003, SARS-associated coronavirus (SARS-CoV) was found to be the etiological agent.

  12. Coronavirus Infections in the Central Nervous System and Respiratory Tract Show Distinct Features in Hospitalized Children.

    Science.gov (United States)

    Li, Yuanyuan; Li, Haipeng; Fan, Ruyan; Wen, Bo; Zhang, Jian; Cao, Xiaoying; Wang, Chengwu; Song, Zhanyi; Li, Shuochi; Li, Xiaojie; Lv, Xinjun; Qu, Xiaowang; Huang, Renbin; Liu, Wenpei

    2016-01-01

    Coronavirus (CoV) infections induce respiratory tract illnesses and central nervous system (CNS) diseases. We aimed to explore the cytokine expression profiles in hospitalized children with CoV-CNS and CoV-respiratory tract infections. A total of 183 and 236 hospitalized children with acute encephalitis-like syndrome and respiratory tract infection, respectively, were screened for anti-CoV IgM antibodies. The expression profiles of multiple cytokines were determined in CoV-positive patients. Anti-CoV IgM antibodies were detected in 22/183 (12.02%) and 26/236 (11.02%) patients with acute encephalitis-like syndrome and respiratory tract infection, respectively. Cytokine analysis revealed that the level of serum granulocyte colony-stimulating factor (G-CSF) was significantly higher in both CoV-CNS and CoV-respiratory tract infection compared with healthy controls. Additionally, the serum level of granulocyte macrophage colony-stimulating factor (GM-CSF) was significantly higher in CoV-CNS infection than in CoV-respiratory tract infection. In patients with CoV-CNS infection, the levels of IL-6, IL-8, MCP-1, and GM-CSF were significantly higher in their cerebrospinal fluid samples than in matched serum samples. To the best of our knowledge, this is the first report showing a high incidence of CoV infection in hospitalized children, especially with CNS illness. The characteristic cytokine expression profiles in CoV infection indicate the importance of host immune response in disease progression. © 2017 S. Karger AG, Basel.

  13. Immunohistochemical, in situ hybridization, and ultrastructural localization of SARS-associated coronavirus in lung of a fatal case of severe acute respiratory syndrome in Taiwan.

    Science.gov (United States)

    Shieh, Wun-Ju; Hsiao, Cheng-Hsiang; Paddock, Christopher D; Guarner, Jeannette; Goldsmith, Cynthia S; Tatti, Kathleen; Packard, Michelle; Mueller, Laurie; Wu, Mu-Zong; Rollin, Pierre; Su, Ih-Jen; Zaki, Sherif R

    2005-03-01

    This article describes the pathological studies of fatal severe acute respiratory syndrome (SARS) in a 73-year-old man during an outbreak of SARS in Taiwan, 2003. Eight days before onset of symptoms, he visited a municipal hospital that was later identified as the epicenter of a large outbreak of SARS. On admission to National Taiwan University Hospital in Taipei, the patient experienced chest tightness, progressive dyspnea, and low-grade fever. His condition rapidly deteriorated with increasing respiratory difficulty, and he died 7 days after admission. The most prominent histopathologic finding was diffuse alveolar damage of the lung. Immunohistochemical and in situ hybridization assays demonstrated evidence of SARS-associated coronavirus (SARS-CoV) infection in various respiratory epithelial cells, predominantly type II pneumocytes, and in alveolar macrophages in the lung. Electron microscopic examination also revealed coronavirus particles in the pneumocytes, and their identity was confirmed as SARS-CoV by immunogold labeling electron microscopy. This report is the first to describe the cellular localization of SARS-CoV in human lung tissue by using a combination of immunohistochemistry, double-stain immunohistochemistry, in situ hybridization, electron microscopy, and immunogold labeling electron microscopy. These techniques represent valuable laboratory diagnostic modalities and provide insights into the pathogenesis of this emerging infection.

  14. SAR-PC: Edge Detection in SAR Images via an Advanced Phase Congruency Model

    Directory of Open Access Journals (Sweden)

    Yuming Xiang

    2017-02-01

    Full Text Available Edge detection in Synthetic Aperture Radar (SAR images has been a challenging task due to the speckle noise. Ratio-based edge detectors are robust operators for SAR images that provide constant false alarm rates, but they are only optimal for step edges. Edge detectors developed by the phase congruency model provide the identification of different types of edge features, but they suffer from speckle noise. By combining the advantages of the two edge detectors, we propose a SAR phase congruency detector (SAR-PC. Firstly, an improved local energy model for SAR images is obtained by replacing the convolution of raw image and the quadrature filters by the ratio responses. Secondly, a new noise level is estimated for the multiplicative noise. Substituting the SAR local energy and the new noise level into the phase congruency model, SAR-PC is derived. Edge response corresponds to the max moment of SAR-PC. We compare the proposed detector with the ratio-based edge detectors and the phase congruency edge detectors. Receiver Operating Characteristic (ROC curves and visual effects are used to evaluate the performance. Experimental results of simulated images and real-world images show that the proposed edge detector is robust to speckle noise and it provides a consecutive edge response.

  15. Online Health Education on SARS to University Students during the SARS Outbreak

    Science.gov (United States)

    Wong, Mee Lian; Koh, David; Iyer, Prasad; Seow, Adeline; Goh, Lee Gan; Chia, Sin Eng; Lim, Meng Kin; Ng, Daniel; Ong, Choon Nam; Phua, Kai Hong; Tambyah, Paul; Chow, Vincent T K; Chew, Suok Kai; Chandran, Ravi; Lee, Hin Peng

    2005-01-01

    Little is known about how online learning may be used to disseminate health information rapidly and widely to large university populations if there is an infectious disease outbreak. During the SARS outbreak in Singapore in 2003, a six-lesson elearning module on SARS was developed for a large university population of 32,000 students. The module…

  16. Synthetic SAR Image Generation using Sensor, Terrain and Target Models

    DEFF Research Database (Denmark)

    Kusk, Anders; Abulaitijiang, Adili; Dall, Jørgen

    2016-01-01

    A tool to generate synthetic SAR images of objects set on a clutter background is described. The purpose is to generate images for training Automatic Target Recognition and Identification algorithms. The tool employs a commercial electromagnetic simulation program to calculate radar cross sections...... of the object using a CAD-model. The raw measurements are input to a SAR system and terrain model, which models thermal noise, terrain clutter, and SAR focusing to produce synthetic SAR images. Examples of SAR images at 0.3m and 0.1m resolution, and a comparison with real SAR imagery from the MSTAR dataset...

  17. Multiresolution analysis of SAR data

    Science.gov (United States)

    Hummel, Robert

    1993-01-01

    The 'Multiresolution Analysis of SAR Data' program supported research work in five areas. Geometric hashing theory can now be viewed as a Bayesian approach to object recognition. False alarm rates can be greatly reduced by using certain enhancements and modifications developed under this project. Geometric hashing algorithms now exist for the Connection Machine. Recognition of synthetically-produced dot arrays was demonstrated using a model base of 1024 objects. The work represents a substantial advance over existing model-based vision capabilities. Algorithms were developed for determining the translation and rotation of a sensor given only the image flow field data. These are new algorithms, and are much more stable than existing computer vision algorithms for this task. The algorithms might provide independent verification of gyroscopic data, or might be used to compute relative motion with respect to a moving scene object, or may be useful for motion-based segmentation. Our theories explaining the Dempster/Shafer calculus and developing new uncertainty reasoning calculi were extended, and presented at a conference and were incorporated into the Bayesian interpretation of geometric hashing. 'Wavelet Slice Theorem' was developed in several different versions, any of which yields an alternate approach to image formation. The result may well provide a more stable approach to image formation than the standard Fourier-based projection slide theorem, since interpolation of unknown spectra values is better-founded.

  18. Performance evaluation of SAR/GMTI algorithms

    Science.gov (United States)

    Garber, Wendy; Pierson, William; Mcginnis, Ryan; Majumder, Uttam; Minardi, Michael; Sobota, David

    2016-05-01

    There is a history and understanding of exploiting moving targets within ground moving target indicator (GMTI) data, including methods for modeling performance. However, many assumptions valid for GMTI processing are invalid for synthetic aperture radar (SAR) data. For example, traditional GMTI processing assumes targets are exo-clutter and a system that uses a GMTI waveform, i.e. low bandwidth (BW) and low pulse repetition frequency (PRF). Conversely, SAR imagery is typically formed to focus data at zero Doppler and requires high BW and high PRF. Therefore, many of the techniques used in performance estimation of GMTI systems are not valid for SAR data. However, as demonstrated by papers in the recent literature,1-11 there is interest in exploiting moving targets within SAR data. The techniques employed vary widely, including filter banks to form images at multiple Dopplers, performing smear detection, and attempting to address the issue through waveform design. The above work validates the need for moving target exploitation in SAR data, but it does not represent a theory allowing for the prediction or bounding of performance. This work develops an approach to estimate and/or bound performance for moving target exploitation specific to SAR data. Synthetic SAR data is generated across a range of sensor, environment, and target parameters to test the exploitation algorithms under specific conditions. This provides a design tool allowing radar systems to be tuned for specific moving target exploitation applications. In summary, we derive a set of rules that bound the performance of specific moving target exploitation algorithms under variable operating conditions.

  19. Hydrodynamics of the groundwater-fed Sian Ka'an Wetlands, Mexico, From InSAR and SAR Data

    DEFF Research Database (Denmark)

    Gondwe, Bibi Ruth Neuman; Hong, S.; Wdowinski, S.

    2008-01-01

    to understand, quantify and predict the wetland dynamics. Remotely sensed Interferometric Synthetic Aperture Radar (InSAR) and Synthetic Aperture Radar (SAR) data offer new opportunities to get hydrodynamic information, which is useful for wetland management. InSAR data produces temporal phase......-changes of the backscattered radar signal, which can be related to the water level changes in vegetated wetlands. SAR data reveals information of surface properties such as the degree of flooding through the amplitude of the backscattered signal. We used RADARSAT-1 InSAR and SAR data to form 36 interferograms and 13 flooding...

  20. Inhibition of severe acute respiratory syndrome coronavirus replication in a lethal SARS-CoV BALB/c mouse model by stinging nettle lectin, Urtica dioica agglutinin

    Science.gov (United States)

    Kumaki, Yohichi; Wandersee, Miles K.; Smith, Aaron J.; Zhou, Yanchen; Simmons, Graham; Nelson, Nathan M.; Bailey, Kevin W.; Vest, Zachary G.; Li, Joseph K.-K.; Chan, Paul Kay-Sheung; Smee, Donald F.; Barnard, Dale L.

    2011-01-01

    Urtica dioica agglutinin (UDA) is a small plant monomeric lectin, 8.7 kDa in size, with an N-acetylglucosamine specificity that inhibits viruses from Nidovirales in vitro. In the current study, we first examined the efficacy of UDA on the replication of different SARS-CoV strains in Vero 76 cells. UDA inhibited virus replication in a dose-dependent manner and reduced virus yields of the Urbani strain by 90% at 1.1 ± 0.4 µg/ml in Vero 76 cells. Then, UDA was tested for efficacy in a lethal SARS-CoV-infected BALB/c mouse model. BALB/c mice were infected with two LD50 (575 PFU) of virus for 4 hours before the mice were treated intraperitoneally with UDA at 20, 10, 5 or 0 mg/kg/day for 4 days. Treatment with UDA at 5 mg/kg significantly protected the mice against a lethal infection with mouse-adapted SARS-CoV (pSARS infection in mice leads to a substantial therapeutic effect that protects mice against death and weight loss. Furthermore, the mode of action of UDA in vitro was further investigated using live SARS-CoV Urbani strain virus and retroviral particles pseudotyped with SARS-CoV spike (S). UDA specifically inhibited the replication of live SARS-CoV or SARS-CoV pseudotyped virus when added just before, but not after, adsorption. These data suggested that UDA likely inhibits SARS-CoV infection by targeting early stages of the replication cycle, namely, adsorption or penetration. In addition, we demonstrated that UDA neutralizes the virus infectivity, presumably by binding to the SARS-CoV spike (S) glycoprotein. Finally, the target molecule for inhibition of virus replication was partially characterized. When UDA was exposed to N-acetylglucosamine and then UDA was added to cells just prior to adsorption, UDA did not inhibit the virus infection. These data support the conclusion that UDA might bind to N-acetylglucosamine-like residues present on the glycosylated envelope glycoproteins, thereby preventing virus attachment to cells. PMID:21338626

  1. The impact of SARS on hospital performance

    Directory of Open Access Journals (Sweden)

    Chen Ran-Chou

    2008-11-01

    Full Text Available Abstract Background During the SARS epidemic, healthcare utilization and medical services decreased significantly. However, the long-term impact of SARS on hospital performance needs to be further discussed. Methods A municipal hospital in Taipei City was shut down for a month due to SARS and then became the designated SARS and infectious disease hospital for the city. This study collected the outpatient, inpatient and emergency service volumes for every year from April to March over four years. Average monthly service amount ± standard deviation were used to compare patient volume for the whole hospital, as well as the outpatient numbers accessing different departments. The ARIMA model of outpatient volume in the pre-SARS year was developed. Results The average monthly service volume of outpatient visits for the base year 2002 was 52317 ± 4204 visits per month, and number for 2003 and the following two years were 55%, 82% and 84% of the base year respectively. The average emergency service volume was 4382 ± 356 visits per month at the base year and this became 45%, 77% and 87% of the base year for the following three years respectively. Average inpatient service volume was 8520 ± 909 inpatient days per month at the base year becoming 43%, 81% and 87% of the base year for the following three years respectively. Only the emergency service volume had recovered to the level of a non-significant difference at the second year after SARS. In addition, the departments of family medicine, metabolism and nephrology reached the 2002 patient number in 2003. The ARIMA (2,1,0 model was the most suitable for outpatient volume in pre-SARS year. The MAPE of the ARIMA (2,1,0 model for the pre-SARS year was 6.9%, and 43.2%, 10.6%, 6.2% for following 3 years. Conclusion This study demonstrates that if a hospital is completely shut down due to SARS or a similar disease, the impact is longer than previous reported and different departments may experience

  2. When animal viruses attack: SARS and avian influenza.

    Science.gov (United States)

    Lee, Paul J; Krilov, Leonard R

    2005-01-01

    SARS and avian influenza have many common features. They both arose in Asia and originated from animal viruses. They both have the potential to become pandemics because human beings lack antibodies to the animal-derived antigens present on the viral surface and rapid dissemination can occur from the relative ease and availability of high speed and far-reaching transportation methods. Pediatricians, in particular, should remain alert about the possibility of pandemic illnesses in their patients. Annual rates of influenza in children may be 1.5 to 3 times those in the adult population, and infection rates during a community epidemic may exceed 40% in preschool-aged children and 30% in school-aged children. Infected children also play a central role in disseminating influenza, as they are the major point of entry for the virus into the household, from which adults spread disease into the community. Of course, children younger than 24 months also are at high risk for complications from influenza. A 1999 Centers for Disease Control and Prevention projection of an influenza pandemic in the US paints a grim picture: 89,000 to 207,000 deaths, 314,000 to 734,000 hospitalizations, 18 million to 42 million outpatient visits, and 20 million to 47 million additional illnesses, at a cost to society of at least dollars 71.3 billion to dollars 166.5 billion. High-risk patients (15% of the population) would account for approximately 84% of all deaths. Although SARS has been kind to the pediatric population so far, there are no guarantees that future outbreaks would be as sparing. To aid readers in remaining up-to-date with SARS and avian influenza, some useful websites are listed in the Sidebar. Two masters of suspense, Alfred Hitchcock and Stephen King, may have been closer to the truth than they ever would have believed. Both birds and a super flu could bring about the end of civilization as we know it. But all is not lost--to paraphrase Thomas Jefferson, the price of health is

  3. Representations of SARS in the British newspapers.

    Science.gov (United States)

    Washer, Peter

    2004-12-01

    In the Spring of 2003, there was a huge interest in the global news media following the emergence of a new infectious disease: severe acute respiratory syndrome (SARS). This study examines how this novel disease threat was depicted in the UK newspapers, using social representations theory and in particular existing work on social representations of HIV/AIDS and Ebola to analyse the meanings of the epidemic. It investigates the way that SARS was presented as a dangerous threat to the UK public, whilst almost immediately the threat was said to be 'contained' using the mechanism of 'othering': SARS was said to be unlikely to personally affect the UK reader because the Chinese were so different to 'us'; so 'other'. In this sense, the SARS scare, despite the remarkable speed with which it was played out in the modern global news media, resonates with the meanings attributed to other epidemics of infectious diseases throughout history. Yet this study also highlights a number of differences in the social representations of SARS compared with earlier epidemics. In particular, this study examines the phenomena of 'emerging and re-emerging infectious diseases' over the past 30 or so years and suggests that these have impacted on the faith once widely held that Western biomedicine could 'conquer' infectious disease.

  4. A modified algorithm for SAR parallel imaging

    Institute of Scientific and Technical Information of China (English)

    HU Ju-rong; WANG Fei; CAO Ning; LU Hao

    2009-01-01

    Synthetic aperture radar can provide two dimension images by converting the acquired echoed SAR signal to targets coordinate and reflectivity. With the advancement of sophisticated SAR signal processing, more and more SAR imaging methods have been proposed for synthetic aperture radar which works at near field and the Fresnel approximation is not appropriate. Time domain correlation is a kind of digital reconstruction method based on processing the synthetic aperture radar data in the two-dimensional frequency domain via Fourier transform. It reconstructs SAR image via simply correlation without any need for approximation or interpolation. But its high computational cost for correlation makes it unsuitable for real time imaging. In order to reduce the computational burden a modified algorithm about time domain correlation was given in this paper. It also can take full advantage of parallel computations of the imaging processor. Its practical implementation was proposed and the preliminary simulation results were presented. Simulation results show that the proposed algorithm is a computationally efficient way of implementing the reconstruction in real time SAR image processing.

  5. Automated rectification and geocoding of SAR imagery

    Science.gov (United States)

    Kwok, R.; Curlander, J. C.

    1987-01-01

    An automated post-processing system has been developed for rectification and geocoding of SAR (Synthetic Aperture Radar) imagery. The system uses as input a raw uncorrected image from the operational SAR correlator, and produces as a standard output a rectified and geocoded product. The accurate geolocation of SAR image pixels is provided by a spatial transformation model which maps the slant range-azimuth SAR image pixels into their location on a prespecified map grid. This model predicts the geodetic location of each pixel by utilizing: the sensor platform position; a geoid model; the parameters of the data collection system and the processing parameters used in the SAR correlator. Based on their geodetic locations, the pixels are mapped by using the desired cartographic projection equations. This rectification and geocoding technique has been tested with Seasat and SIR-B images. The test results demonstrate absolute location uncertainty of less than 50 m and relative distortion (scale factor and skew) of less than 0.1 percent relative to local variations from the assumed geoid.

  6. Low complexity efficient raw SAR data compression

    Science.gov (United States)

    Rane, Shantanu; Boufounos, Petros; Vetro, Anthony; Okada, Yu

    2011-06-01

    We present a low-complexity method for compression of raw Synthetic Aperture Radar (SAR) data. Raw SAR data is typically acquired using a satellite or airborne platform without sufficient computational capabilities to process the data and generate a SAR image on-board. Hence, the raw data needs to be compressed and transmitted to the ground station, where SAR image formation can be carried out. To perform low-complexity compression, our method uses 1-dimensional transforms, followed by quantization and entropy coding. In contrast to previous approaches, which send uncompressed or Huffman-coded bits, we achieve more efficient entropy coding using an arithmetic coder that responds to a continuously updated probability distribution. We present experimental results on compression of raw Ku-SAR data. In those we evaluate the effect of the length of the transform on compression performance and demonstrate the advantages of the proposed framework over a state-of-the-art low complexity scheme called Block Adaptive Quantization (BAQ).

  7. ICAO's anti-SARS airport activities.

    Science.gov (United States)

    Finkelstein, Silvio; Curdt-Christiansen, Claus M

    2003-11-01

    To prevent SARS from spreading through air travel and in order to rebuild the confidence of the traveling public in the safety of air travel, ICAO has set up an "Anti-SARS Airport Evaluation Project." The first phase of this project was to develop a set of protective measures for international airports in affected areas to adopt and implement and then to send out, on the request of Contracting States, a team of inspectors to evaluate and assess airports and issue a "statement of evaluation" that the airport inspected complies with the ICAO anti-SARS protective measures. In cooperation with the World Health Organization (WHO), the first part of phase 1 was completed in early June this year, and the second part of phase 1 followed soon after. By mid-July, five international airports in Southeast Asia had been inspected and found to be in full compliance with the ICAO anti-SARS protective measures. The success of this ICAO project is believed to have contributed significantly to the recovery of international air travel and related industries now taking place. Phase 2 of the project is now being developed. It is aimed at preventing a resurgence of SARS, but it also contains elements to make the methodology developed applicable to future outbreaks of any other communicable disease in which the mode of transmission could involve aviation and/or the need to prevent the spread of the disease by air travel.

  8. Photodissociation of ketene: CH2CO → CH2(a1A1) + CO(v=1) rates and dynamics

    Energy Technology Data Exchange (ETDEWEB)

    Wade, Elisabeth Ayn [Univ. of California, Berkeley, CA (United States)

    1996-12-01

    The rotational energy release in the dissociation of ketene (CH2CO) along its singlet potential energy surface is observed and compared with several statistical and dynamical theories. Rotational distributions for the product, CO($\\tilde{X}$1Σ+)(v=1), are measured from the threshold for production of CH2($\\tilde{a}$ 1A1) (0,0,0) + CO($\\tilde{X}$1Σ+)(v=1) to 1720 cm-1 above. Near threshold (E≤ 200 cm-1 over threshold), phase space theory (PST) matches the observed distributions. At 357 and 490 cm-1, PST constrained by the measured state distributions of the methylene fragment, provides a good fit to these CO(v=1) rotational distributions. For E > 490 cm-1, the constrained PST matches the average rotational energy observed but predicts distributions which are broader than observed. This contrasts to the rotational distributions of the 1CH2 fragment which become shifted to lower rotational states than PST as energy increases from 200 cm-1 above threshold. Dynamical models, the impulsive model and Franck-Condon mapping, do not account for the product rotational state distributions. The CO(v=1) rotational distributions for E > 200 cm-1 contain no measurable product from triplet channel fragmentation. Therefore, they can be compared with the previously determined CO(v=0) rotational distributions in order to partition the CO(v=0) yield between singlet and triplet channels and recalculate the singlet yield. This new yield is found to be at the upper limits of the range previously reported. Rate constants and quantum yields have been determined for the photodissociation of ketene to produce CH2(a 1A1) (0,0,0) + CO(X 1Σ+)(v=1). At 57, 110, 200, 357, and 490 cm-1 above this product threshold, vibrational branching ratios for the singlet products were measured and

  9. Exploration of Advanced Bistatic SAR Experiments (in English

    Directory of Open Access Journals (Sweden)

    Deng Yun-kai

    2014-02-01

    Full Text Available This study concentrates on the results of several advanced hybrid bistatic SAR experiments. The hybrid bistatic configuration applies to the case in which the transmitter and receiver are mounted on different types of platforms, e.g., spaceborne/airborne, airborne/stationary, spaceborne/stationary, and so on. Several hybrid bistatic SAR experiments have been performed successfully, i.e., TerraSAR-X/PAMIR, PAMIR/stationary, and TerraSAR-X/stationary. Furthermore, Multiple Baseline Interferometry SAR (MB-InSAR and Digital Beam-Forming (DBF technologies are validated in the TerraSAR-X/stationary configuration. Note that the DBF experiment results based on the spaceborne illuminator are discussed for the first time in SAR community. In addition, this paper emphasizes imaging geometry, image analysis, and focusing results.

  10. Application of SAR Imagery in Submarine Topography Surveys

    Institute of Scientific and Technical Information of China (English)

    张宁川; 梁开龙; 桂力民

    2004-01-01

    An important research area in oceanographic surveying and mapping is to obtain submarine topography by remote sensing technique, especially by SAR imagery. In this article, problems related to SAR imagery are analyzed to provide references for the further research.

  11. Distinct patterns of IFITM-mediated restriction of filoviruses, SARS coronavirus, and influenza A virus.

    Directory of Open Access Journals (Sweden)

    I-Chueh Huang

    Full Text Available Interferon-inducible transmembrane proteins 1, 2, and 3 (IFITM1, 2, and 3 are recently identified viral restriction factors that inhibit infection mediated by the influenza A virus (IAV hemagglutinin (HA protein. Here we show that IFITM proteins restricted infection mediated by the entry glycoproteins (GP(1,2 of Marburg and Ebola filoviruses (MARV, EBOV. Consistent with these observations, interferon-β specifically restricted filovirus and IAV entry processes. IFITM proteins also inhibited replication of infectious MARV and EBOV. We observed distinct patterns of IFITM-mediated restriction: compared with IAV, the entry processes of MARV and EBOV were less restricted by IFITM3, but more restricted by IFITM1. Moreover, murine Ifitm5 and 6 did not restrict IAV, but efficiently inhibited filovirus entry. We further demonstrate that replication of infectious SARS coronavirus (SARS-CoV and entry mediated by the SARS-CoV spike (S protein are restricted by IFITM proteins. The profile of IFITM-mediated restriction of SARS-CoV was more similar to that of filoviruses than to IAV. Trypsin treatment of receptor-associated SARS-CoV pseudovirions, which bypasses their dependence on lysosomal cathepsin L, also bypassed IFITM-mediated restriction. However, IFITM proteins did not reduce cellular cathepsin activity or limit access of virions to acidic intracellular compartments. Our data indicate that IFITM-mediated restriction is localized to a late stage in the endocytic pathway. They further show that IFITM proteins differentially restrict the entry of a broad range of enveloped viruses, and modulate cellular tropism independently of viral receptor expression.

  12. PRF Ambiguity Detrmination for Radarsat ScanSAR System

    Science.gov (United States)

    Jin, Michael Y.

    1998-01-01

    PRF ambiguity is a potential problem for a spaceborne SAR operated at high frequencies. For a strip mode SAR, there were several approaches to solve this problem. This paper, however, addresses PRF ambiguity determination algorithms suitable for a burst mode SAR system such as the Radarsat ScanSAR. The candidate algorithms include the wavelength diversity algorithm, range look cross correlation algorithm, and multi-PRF algorithm.

  13. Exploration of Advanced Bistatic SAR Experiments (in English)

    OpenAIRE

    Deng Yun-kai; Robert Wang

    2014-01-01

    This study concentrates on the results of several advanced hybrid bistatic SAR experiments. The hybrid bistatic configuration applies to the case in which the transmitter and receiver are mounted on different types of platforms, e.g., spaceborne/airborne, airborne/stationary, spaceborne/stationary, and so on. Several hybrid bistatic SAR experiments have been performed successfully, i.e., TerraSAR-X/PAMIR, PAMIR/stationary, and TerraSAR-X/stationary. Furthermore, Multiple Baseline Interferomet...

  14. Infrastructure monitoring with spaceborne SAR sensors

    CERN Document Server

    ANGHEL, ANDREI; CACOVEANU, REMUS

    2017-01-01

    This book presents a novel non-intrusive infrastructure monitoring technique based on the detection and tracking of scattering centers in spaceborne SAR images. The methodology essentially consists of refocusing each available SAR image on an imposed 3D point cloud associated to the envisaged infrastructure element and identifying the reliable scatterers to be monitored by means of four dimensional (4D) tomography. The methodology described in this book provides a new perspective on infrastructure monitoring with spaceborne SAR images, is based on a standalone processing chain, and brings innovative technical aspects relative to conventional approaches. The book is intended primarily for professionals and researchers working in the area of critical infrastructure monitoring by radar remote sensing.

  15. Verification of L-band SAR calibration

    Science.gov (United States)

    Larson, R. W.; Jackson, P. L.; Kasischke, E.

    1985-01-01

    Absolute calibration of a digital L-band SAR system to an accuracy of better than 3 dB has been verified. This was accomplished with a calibration signal generator that produces the phase history of a point target. This signal relates calibration values to various SAR data sets. Values of radar cross-section (RCS) of reference reflectors were obtained using a derived calibration relationship for the L-band channel on the ERIM/CCRS X-C-L SAR system. Calibrated RCS values were compared to known RCS values of each reference reflector for verification and to obtain an error estimate. The calibration was based on the radar response to 21 calibrated reference reflectors.

  16. ANALYSIS ON STABILITY OF AN AUTONOMOUS DYNAMICS SYSTEM FOR SARS EPIDEMIC

    Institute of Scientific and Technical Information of China (English)

    ZHANG Shuang-de; HAO Hai

    2005-01-01

    An extended dynamic model for SARS epidemic was deduced on the basis of the K-M infection model with taking the density constraint of susceptible population and the cure and death rates of patients into consideration. It is shown that the infectionfree equilibrium is the global asymptotic stability under given conditions, and endemic equilibrium is not the asymptotic stability. It comes to the conclusion that the epidemic system is the permanent persistence existence under appropriate conditions.

  17. False-Positive Results in a Recombinant Severe Acute Respiratory Syndrome-Associated Coronavirus (SARS-CoV) Nucleocapsid-Based Western Blot Assay Were Rectified by the Use of Two Subunits (S1 and S2) of Spike for Detection of Antibody to SARS-CoV

    Science.gov (United States)

    Maache, Mimoun; Komurian-Pradel, Florence; Rajoharison, Alain; Perret, Magali; Berland, Jean-Luc; Pouzol, Stéphane; Bagnaud, Audrey; Duverger, Blandine; Xu, Jianguo; Osuna, Antonio; Paranhos-Baccalà, Glaucia

    2006-01-01

    To evaluate the reactivity of the recombinant proteins expressed in Escherichia coli strain BL21(DE3), a Western blot assay was performed by using a panel of 78 serum samples obtained, respectively, from convalescent-phase patients infected with severe acute respiratory syndrome-associated coronavirus (SARS-CoV) (30 samples) and from healthy donors (48 samples). As antigen for detection of SARS-CoV, the nucleocapsid protein (N) showed high sensitivity and strong reactivity with all samples from SARS-CoV patients and cross-reacted with all serum samples from healthy subjects, with either those obtained from China (10 samples) or those obtained from France (38 serum samples), giving then a significant rate of false positives. Specifically, our data indicated that the two subunits, S1 (residues 14 to 760) and S2 (residues 761 to 1190), resulted from the divided spike reacted with all samples from SARS-CoV patients and without any cross-reactivity with any of the healthy serum samples. Consequently, these data revealed the nonspecific nature of N protein in serodiagnosis of SARS-CoV compared with the S1 and S2, where the specificity is of 100%. Moreover, the reported results indicated that the use of one single protein as a detection antigen of SARS-CoV infection may lead to false-positive diagnosis. These may be rectified by using more than one protein for the serodiagnosis of SARS-CoV. PMID:16522785

  18. Efficacy of various disinfectants against SARS coronavirus.

    Science.gov (United States)

    Rabenau, H F; Kampf, G; Cinatl, J; Doerr, H W

    2005-10-01

    The recent severe acute respiratory syndrome (SARS) epidemic in Asia and Northern America led to broad use of various types of disinfectant in order to control the public spread of the highly contagious virus. However, only limited data were available to demonstrate their efficacy against SARS coronavirus (SARS-CoV). We therefore investigated eight disinfectants for their activity against SARS-CoV according to prEN 14476. Four hand rubs were tested at 30s (Sterillium, based on 45% iso-propanol, 30% n-propanol and 0.2% mecetronium etilsulphate; Sterillium Rub, based on 80% ethanol; Sterillium Gel, based on 85% ethanol; Sterillium Virugard, based on 95% ethanol). Three surface disinfectants were investigated at 0.5% for 30 min and 60 min (Mikrobac forte, based on benzalkonium chloride and laurylamine; Kohrsolin FF, based on benzalkonium chloride, glutaraldehyde and didecyldimonium chloride; Dismozon pur, based on magnesium monoperphthalate), and one instrument disinfectant was investigated at 4% for 15 min, 3% for 30 min and 2% for 60 min [Korsolex basic, based on glutaraldehyde and (ethylenedioxy)dimethanol]. Three types of organic load were used: 0.3% albumin, 10% fetal calf serum, and 0.3% albumin with 0.3% sheep erythrocytes. Virus titres were determined by a quantitative test (endpoint titration) in 96-well microtitre plates. With all tested preparations, SARS-CoV was inactivated to below the limit of detection (reduction factor mostly > or =4), regardless of the type of organic load. In summary, SARS-CoV can be inactivated quite easily with many commonly used disinfectants.

  19. Severe Acute Respiratory Syndrome (SARS) Prevention in Taiwan

    Science.gov (United States)

    Liu, Hsueh-Erh

    2004-01-01

    Severe Acute Respiratory Syndrome (SARS) is a newly identified respiratory disease that threatened Taiwan between April 14 and July 5, 2003. Chang Gung University experienced various SARS-related episodes, such as the postponement of classes for 7 days, the reporting of probable SARS cases, and the isolation of students under Level A and B…

  20. Progress Toward Demonstrating SAR Monitoring of Chinese Seas

    Science.gov (United States)

    Huang, Weigen; Johannessen, Johnny; Alpers, Werner; Yang, Jingsong

    2010-12-01

    "Demonstrating SAR monitoring of Chinese seas" is a project of the ESA-MOST Dragon 2 program. This paper presents the progress of the project. Retrieval algorithms for SAR monitoring of sea surface currents, oceanic internal waves, sea surface winds, oil spills and ships have been advanced. SAR monitoring of Chinese seas in near-real-time is now in demonstration phase.

  1. (Q)SARs for human toxicological endpoints: a literature search

    NARCIS (Netherlands)

    Hulzebos E; Schielen P; Masilankiewicz L; CSR; NVIC

    1999-01-01

    Het doel van dit rapport is het beschrijven van humaan toxicologische SARs (structuur-activiteitsrelaties) die beschikbaar zijn in de literatuur alsmede de SARs die gebruikt worden door de US EPA (Environmental Protection Agency). De implementatie van het gebruik van SARs voor de effect assessment

  2. (Q)SARs for human toxicological endpoints: a literature search

    NARCIS (Netherlands)

    Hulzebos E; Schielen P; Masilankiewicz L; CSR; NVIC

    1999-01-01

    The goal here was to describe human toxicological SARs (structure-activity relationships) available in the literature and used by the US EPA (Environmental Protection Agency). The CSR laboratory investigated implementation of SARs for the effect assessment. SARs correlate the molecular structure

  3. Estimating IMU heading error from SAR images.

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin Walter

    2009-03-01

    Angular orientation errors of the real antenna for Synthetic Aperture Radar (SAR) will manifest as undesired illumination gradients in SAR images. These gradients can be measured, and the pointing error can be calculated. This can be done for single images, but done more robustly using multi-image methods. Several methods are provided in this report. The pointing error can then be fed back to the navigation Kalman filter to correct for problematic heading (yaw) error drift. This can mitigate the need for uncomfortable and undesired IMU alignment maneuvers such as S-turns.

  4. Geocoding of AIRSAR/TOPSAR SAR Data

    Science.gov (United States)

    Holecz, Francesco; Lou, Yun-Ling; vanZyl, Jakob

    1996-01-01

    It has been demonstrated and recognized that radar interferometry is a promising method for the determination of digital elevation information and terrain slope from Synthetic Aperture Radar (SAR) data. An important application of Interferometric SAR (InSAR) data in areas with topographic variations is that the derived elevation and slope can be directly used for the absolute radiometric calibration of the amplitude SAR data as well as for scattering mechanisms analysis. On the other hand polarimetric SAR data has long been recognized as permitting a more complete inference of natural surfaces than a single channel radar system. In fact, imaging polarimetry provides the measurement of the amplitude and relative phase of all transmit and receive polarizations. On board the NASA DC-8 aircraft, NASA/JPL operates the multifrequency (P, L and C bands) multipolarimetric radar AIRSAR. The TOPSAR, a special mode of the AIRSAR system, is able to collect single-pass interferometric C- and/or L-band VV polarized data. A possible configuration of the AIRSAR/TOPSAR system is to acquire single-pass interferometric data at C-band VV polarization and polarimetric radar data at the two other lower frequencies. The advantage of this system configuration is to get digital topography information at the same time the radar data is collected. The digital elevation information can therefore be used to correctly calibrate the SAR data. This step is directly included in the new AIRSAR Integrated Processor. This processor uses a modification of the full motion compensation algorithm described by Madsen et al. (1993). However, the Digital Elevation Model (DEM) with the additional products such as local incidence angle map, and the SAR data are in a geometry which is not convenient, since especially DEMs must be referred to a specific cartographic reference system. Furthermore, geocoding of SAR data is important for multisensor and/or multitemporal purposes. In this paper, a procedure to

  5. Science data collection with polarimetric SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Woelders, Kim; Madsen, Søren Nørvang

    1996-01-01

    Discusses examples on the use of polarimetric SAR in a number of Earth science studies. The studies are presently being conducted by the Danish Center for Remote Sensing. A few studies of the European Space Agency's EMAC programme are also discussed. The Earth science objectives are presented, an......, and the potential of polarimetric SAR is discussed and illustrated with data collected by the Danish airborne EMISAR system during a number of experiments in 1994 and 1995. The presentation will include samples of data acquired for the different studies...

  6. A decade after SARS: Strategies to control emerging coronaviruses

    Science.gov (United States)

    Graham, Rachel L.; Donaldson, Eric F.; Baric, Ralph S.

    2016-01-01

    Two novel coronaviruses have emerged in humans in the 21st century, Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) and Middle East Respiratory Syndrome human coronavirus (MERS-CoV), both of which cause acute respiratory distress syndrome (ARDS) and have high mortality rates. There are no clinically approved vaccines or antiviral drugs available for either of these infections; thus, a priority in the field is the development of effective therapeutic and preventive strategies that can be readily applied to new emergent strains. This review will: describe the emergence and identification of novel human coronaviruses over the last 10 years; review their key biological features, including tropism and receptor use; and summarize approaches to develop broadly effective vaccines. PMID:24217413

  7. Certainties and Uncertainties Facing Emerging Respiratory Infectious Diseases: Lessons from SARS

    Directory of Open Access Journals (Sweden)

    Yee-Chun Chen

    2008-06-01

    Full Text Available Every emerging infectious disease is a challenge to the whole of mankind. There are uncertainties regarding whether there will be a pandemic, if it will be caused by the highly pathogenic H5N1 influenza virus, when or where it will occur, how imminent or how severe it will be. No one can accurately predict if and when a given virus will become a pandemic virus. Pandemic prevention strategies must be based on preparing for the unexpected and being capable of reacting accordingly. There is growing evidence that infection control measures were helpful in containment of severe acute respiratory syndrome (SARS as well as avian influenza. Compliance of standard infection control measures, intensive promotion of hand and respiratory hygiene, vigilance and triage of patients with febrile illness, and specific infection control measures are key components to contain a highly contagious disease in hospital and to protect healthcare workers, patients and visitors. The importance of standard precautions for any patient and cleaning and disinfection for the healthcare environment cannot be overemphasized. SARS illustrated dramatically the potential of air travel and globalization for the dissemination of an emerging infectious disease. To prevent the potential serious consequences of pandemic influenza, timely implementation of pharmaceutical and non-pharmaceutical interventions locally within the outbreak area is the key to minimizing global spread. Herein, we relate our perspective on useful lessons derived from a review of the SARS epidemic that may be useful to physicians, especially when looking ahead to the next epidemic.

  8. Severe acute respiratory syndrome (SARS) in a paediatric cluster in Singapore

    Energy Technology Data Exchange (ETDEWEB)

    Tsou, Ian Y.; Kaw, Gregory J.; Chee, Thomas S. [Department of Diagnostic Radiology, Tan Tock Seng Hospital, 11 Jalan Tan Tock Seng, 308433, Singapore (Singapore); Loh, Lik Eng; Chan, Irene [Department of Paediatric Medicine, KK Women' s and Children' s Hospital, 100 Bukit Timah Road, 229899, Singapore (Singapore)

    2004-01-01

    Severe acute respiratory syndrome (SARS) is a major infectious disease pandemic that occurred in early 2003, and one of the diagnostic criteria is the presence of chest radiographic findings. To describe the radiographic features of SARS in a cluster of affected children. The chest radiographs of four related children ranging in age from 18 months to 9 years diagnosed as having SARS were reviewed for the presence of air-space shadowing, air bronchograms, peribronchial thickening, interstitial disease, pleural effusion, pneumothorax, hilar lymphadenopathy and mediastinal widening. Ill-defined air-space shadowing was the common finding in all the children. The distribution was unifocal or multifocal. No other findings were seen on the radiographs. None of the children developed radiographic findings consistent with acute respiratory distress syndrome. All four children showed significant resolution of the radiographic findings 4-6 days after the initial radiograph. Early recognition of these features is important in implementing isolation and containment measures to prevent the spread of infection. SARS in children appears to manifest as a milder form of the disease as compared to adults. (orig.)

  9. Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis

    NARCIS (Netherlands)

    Hamming, [No Value; Timens, W; Bulthuis, MLC; Lely, AT; Navis, GJ; van Goor, H

    2004-01-01

    Severe acute respiratory syndrome (SARS) is an acute infectious disease that spreads mainly via the respiratory route. A distinct coronavirus (SARS-CoV) has been identified as the aetiological agent of SARS. Recently, a metallopeptidase named angiotensin-converting enzyme 2 (ACE2) has been identifie

  10. Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis

    NARCIS (Netherlands)

    Hamming, [No Value; Timens, W; Bulthuis, MLC; Lely, AT; Navis, GJ; van Goor, H

    Severe acute respiratory syndrome (SARS) is an acute infectious disease that spreads mainly via the respiratory route. A distinct coronavirus (SARS-CoV) has been identified as the aetiological agent of SARS. Recently, a metallopeptidase named angiotensin-converting enzyme 2 (ACE2) has been

  11. SARS knowledge, perceptions, and behaviors: a comparison between Finns and the Dutch during the SARS outbreak in 2003

    NARCIS (Netherlands)

    Vartti, A.M.; Oenema, A.; Schreck, M.; Uutela, A.; Zwart, de O.; Brug, J.; Aro, A.R.

    2009-01-01

    BACKGROUND: The SARS outbreak served to test both local and international outbreak management and risk communication practices. PURPOSE: The study compares SARS knowledge, perceptions, behaviors, and information between Finns and the Dutch during the SARS outbreak in 2003. METHOD: The participants

  12. Quantum-SAR extension of the spectral-SAR algorithm: application to polyphenolic anticancer bioactivity.

    Science.gov (United States)

    Putz, Mihai V; Putz, Ana-Maria; Lazea, Marius; Ienciu, Luciana; Chiriac, Adrian

    2009-03-01

    Aiming to assess the role of individual molecular structures in the molecular mechanism of ligand-receptor interaction correlation analysis, the recent Spectral-SAR approach is employed to introduce the Quantum-SAR (QuaSAR) "wave" and "conversion factor" in terms of difference between inter-endpoint inter-molecular activities for a given set of compounds; this may account for inter-conversion (metabolization) of molecular (concentration) effects while indicating the structural (quantum) based influential/detrimental role on bio-/eco- effect in a causal manner rather than by simple inspection of measured values; the introduced QuaSAR method is then illustrated for a study of the activity of a series of flavonoids on breast cancer resistance protein.

  13. TomoSAR Platform: The New Irstea Service as Demand for SAR, Interferometry, Polarimetry and Tomography

    Science.gov (United States)

    Ho Tong Minh, Dinh; Ngo, Yen-Nhi; Baghdadi, Nicolas; Maurel, Pierre

    2016-08-01

    Developing and improving methods to monitor both natural and non-natural environments such as forest and urban in space and time is a timely challenge. To overcome this challenge, we created a software platform - TomoSAR. The kernel of this platform supports the entire processing from SAR, Interferometry, Polarimetry, to Tomography (so called TomoSAR). The objective of this paper is to introduce this platform about its design architecture and its capacity. We showed four examples to highlight the TomoSAR platform capacities. First, the useful of the interferometric coherence of TOPS Sentinel-1 for land cover classification was highlighted. Second, a TOPS Sentinel-1 differential interferogram in a complex scenario volcano was successfully produced. Third, a TOPS Persistent Scatterers Interferometry analysis for estimating subsidence in Ho Chi Minh City area was demonstrated. Finally, the capability of processing and modelling of 3D P-band tomography in volume forest scattering were reported.

  14. Quantum-SAR Extension of the Spectral-SAR Algorithm. Application to Polyphenolic Anticancer Bioactivity

    Science.gov (United States)

    Putz, Mihai V.; Putz, Ana-Maria; Lazea, Marius; Ienciu, Luciana; Chiriac, Adrian

    2009-01-01

    Aiming to assess the role of individual molecular structures in the molecular mechanism of ligand-receptor interaction correlation analysis, the recent Spectral-SAR approach is employed to introduce the Quantum-SAR (QuaSAR) “wave” and “conversion factor” in terms of difference between inter-endpoint inter-molecular activities for a given set of compounds; this may account for inter-conversion (metabolization) of molecular (concentration) effects while indicating the structural (quantum) based influential/detrimental role on bio-/eco- effect in a causal manner rather than by simple inspection of measured values; the introduced QuaSAR method is then illustrated for a study of the activity of a series of flavonoids on breast cancer resistance protein. PMID:19399244

  15. An Optical Flow Method Applied to Co-Registration of Remote Sensing Images: Example for SAR/SAR, SAR/LIDAR, SAR/Optical Images of BIOSAR 2010 Campaign

    Science.gov (United States)

    Colin-Koeniguer, Elise

    2016-08-01

    This article proposes an optical flow type method for coregistration of forest remote sensing images. The principle of the algorithm called GeFolki is first explained. Results are shown on the images of the BioSAR 3 campaign, for the production of SAR interferograms, the coregistration a SAR and LIDAR image, and the coregistration an optical image and SAR image.The advantages of such an algorithm over conventional algorithms are explained. Finally, we propose various applications within the operating data for future BIOMASS mission: massive interferometry, ground truth production, upscaling by fusion of LIDAR and SAR data, and image mining.

  16. A Review About SAR Technique for Shallow Water Bathymetry Surveys

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    Synthetic Aperture Radar (SAR) has become one of the important tools for shallow water bathymetry surveys. This has significant economic efficiency compared with the traditional bathymetry surveys. Numerical models have been developed to simulate shallow water bathymetry SAR images. Inversion of these models makes it possible to assess the water depths from SAR images. In this paper, these numerical models of SAR technique are reviewed, and examples are illustrated including in the coastal areas of China. Some issues about SAR technique available and the research orientation in future are also discussed.

  17. SAR Image Texture Analysis of Oil Spill

    Science.gov (United States)

    Ma, Long; Li, Ying; Liu, Yu

    Oil spills are seriously affecting the marine ecosystem and cause political and scientific concern since they have serious affect on fragile marine and coastal ecosystem. In order to implement an emergency in case of oil spills, it is necessary to monitor oil spill using remote sensing. Spaceborne SAR is considered a promising method to monitor oil spill, which causes attention from many researchers. However, research in SAR image texture analysis of oil spill is rarely reported. On 7 December 2007, a crane-carrying barge hit the Hong Kong-registered tanker "Hebei Spirit", which released an estimated 10,500 metric tons of crude oil into the sea. The texture features on this oil spill were acquired based on extracted GLCM (Grey Level Co-occurrence Matrix) by using SAR as data source. The affected area was extracted successfully after evaluating capabilities of different texture features to monitor the oil spill. The results revealed that the texture is an important feature for oil spill monitoring. Key words: oil spill, texture analysis, SAR

  18. Ambiguity noise analysis of a SAR system

    Science.gov (United States)

    Tian, Haishan; Chang, Wenge; Li, Xiangyang

    2015-12-01

    The presence of range and azimuth (or Doppler) ambiguities in synthetic aperture radars (SARs) is well known. The ambiguity noise is related to the antenna pattern and the value of pulse repetition frequency (PRF). Because a new frequency modulated continuous wave (FMCW) SAR has the characters of low cost and small size, and the capacity of real-time signal processing, the antenna will likely vibrate or deform due to a lack of the stabilized platform. And the value of PRF cannot be much high because of the high computation burden for the real-time processing. The aim of this study is to access and improve the performance of a new FMCW SAR system based on the ambiguity noise. First, the quantitative analysis of the system's ambiguity noise level is performed; an antenna with low sidelobes is designed. The conclusion is that the range ambiguity noise is small; the azimuth ambiguity noise is somewhat increased, however, it is sufficiently small to have marginal influence on the image quality. Finally, the ambiguity noise level is measured using the imaging data from a Ku-band FMCW SAR. The results of this study show that the measured noise level coincides with the theoretical noise level.

  19. CFAR Edge Detector for Polarimetric SAR Images

    DEFF Research Database (Denmark)

    Schou, Jesper; Skriver, Henning; Nielsen, Allan Aasbjerg;

    2003-01-01

    Finding the edges between different regions in an image is one of the fundamental steps of image analysis, and several edge detectors suitable for the special statistics of synthetic aperture radar (SAR) intensity images have previously been developed. In this paper, a new edge detector...

  20. Multichannel imaging with the AMBER FMCW SAR

    NARCIS (Netherlands)

    Otten, M.P.G.; Rossum, W.L. van; Graaf, M.W. van der; Vlothuizen, W.J.; Tan, R.G.

    2014-01-01

    An X-band Digital Array Synthetic Aperture Radar for a Short Range Tactical UAV is presented. The Frequency Modulated Continuous Wave radar principle in combination with digital beam forming over 24 receive channels is used to achieve low power and advanced imaging SAR capabilities on small platform

  1. Satellite sar detection of hurricane helene (2006)

    DEFF Research Database (Denmark)

    Ju, Lian; Cheng, Yongcun; Xu, Qing;

    2013-01-01

    In this paper, the wind structure of hurricane Helene (2006) over the Atlantic Ocean is investigated from a C-band RADARSAT-1 synthetic aperture radar (SAR) image acquired on 20 September 2006. First, the characteristics, e.g., the center, scale and area of the hurricane eye (HE) are determined...

  2. What is Gammarus campylops of Sars, 1894

    NARCIS (Netherlands)

    Stock, J.H.; Kant, P.

    1966-01-01

    A revision of the specimens described by Sars, 1894, as Gammarus campylops Leach, 1814, proved that they did not belong to that species, nor to Gammarus ochlos Reid, 1945 (= G. sarsi Reid, 1943), as Reid believed. Reid’s species, of which also original specimens have been reexamined, is identical

  3. Multichannel imaging with the AMBER FMCW SAR

    NARCIS (Netherlands)

    Otten, M.P.G.; Rossum, W.L. van; Graaf, M.W. van der; Vlothuizen, W.J.; Tan, R.G.

    2014-01-01

    An X-band Digital Array Synthetic Aperture Radar for a Short Range Tactical UAV is presented. The Frequency Modulated Continuous Wave radar principle in combination with digital beam forming over 24 receive channels is used to achieve low power and advanced imaging SAR capabilities on small platform

  4. Epidemic Models for SARS and Measles

    Science.gov (United States)

    Rozema, Edward

    2007-01-01

    Recent events have led to an increased interest in emerging infectious diseases. This article applies various deterministic models to the SARS epidemic of 2003 and a measles outbreak in the Netherlands in 1999-2000. We take a historical approach beginning with the well-known logistic curve and a lesser-known extension popularized by Pearl and Reed…

  5. Living in the Shadow of SARS

    Institute of Scientific and Technical Information of China (English)

    LUZHU

    2003-01-01

    I Was born in April, when spring is in the air, the sun shines, the sky is blue, and the fragrance of lilacs is everywhere. This year's birthday was unforgettable.As the SARS epidemic had broken out in Beijing, it was spent under the threat of this killer disease.

  6. Multichannel imaging with the AMBER FMCW SAR

    NARCIS (Netherlands)

    Otten, M.P.G.; Rossum, W.L. van; Graaf, M.W. van der; Vlothuizen, W.J.; Tan, R.G.

    2014-01-01

    An X-band Digital Array Synthetic Aperture Radar for a Short Range Tactical UAV is presented. The Frequency Modulated Continuous Wave radar principle in combination with digital beam forming over 24 receive channels is used to achieve low power and advanced imaging SAR capabilities on small

  7. What is Gammarus campylops of Sars, 1894

    NARCIS (Netherlands)

    Stock, J.H.; Kant, P.

    1966-01-01

    A revision of the specimens described by Sars, 1894, as Gammarus campylops Leach, 1814, proved that they did not belong to that species, nor to Gammarus ochlos Reid, 1945 (= G. sarsi Reid, 1943), as Reid believed. Reid’s species, of which also original specimens have been reexamined, is identical wi

  8. Forest Height Inversion Using Dual-pol Polarimetric SAR Interferometry

    Science.gov (United States)

    Fu, W. X.; Guo, H. D.; Xie, C.; Lu, Y. C.; Li, X. W.

    2014-03-01

    Polarimetric Synthetic Aperture Radar Interferometry (PolInSAR) has been extensively applied for forest parameter inversion over different frequencies and polarimetric conditions. So far, most research was based on full-pol SAR images with relatively small coverage. A spaceborne SAR system will have the potential for PolInSAR applications used for global forest monitoring. Spaceborne dual-pol SAR images usually have higher resolution and larger swath than full-pol mode. In this paper, forest height retrieval was attempted by PolInSAR from a L-band spaceborne dual-pol SAR pairs using HH and HV channels. The random volume over ground (RVoG) model was used to retrieve the height and the coherence optimization method was extended to the dual-pol PolInSAR, which makes use of polarimetry to enhance the quality of SAR interferograms. The three-stage process is also used in the dual-pol PolInSAR technique. Finally, the experimental test was performed for forest height estimation on the dual-pol L-band SAR data of the Saihanba forest acquired by the ALOS PALSAR sensor in 2009.

  9. SAR Raw Data Generation for Complex Airport Scenes

    Directory of Open Access Journals (Sweden)

    Jia Li

    2014-10-01

    Full Text Available The method of generating the SAR raw data of complex airport scenes is studied in this paper. A formulation of the SAR raw signal model of airport scenes is given. Via generating the echoes from the background, aircrafts and buildings, respectively, the SAR raw data of the unified SAR imaging geometry is obtained from their vector additions. The multipath scattering and the shadowing between the background and different ground covers of standing airplanes and buildings are analyzed. Based on the scattering characteristics, coupling scattering models and SAR raw data models of different targets are given, respectively. A procedure is given to generate the SAR raw data of airport scenes. The SAR images from the simulated raw data demonstrate the validity of the proposed method.

  10. The first Sentinel-1 SAR image of a typhoon

    Institute of Scientific and Technical Information of China (English)

    LI Xiaofeng

    2015-01-01

    In this note, we present the first Sentinel-1 synthetic aperture radar (SAR) typhoon image acquired in the northwest Pacific on October 4, 2014. The eye shape and sea surface wind patterns associated with Typhoon Phanfone are clearly shown in the high-quality SAR image. SAR winds retrieval procedure was given but the actual wind estimates will only be available after the European Space Agency (ESA) releases the official calibration coefficients in order to accurately derive the SAR-measured normalized radar cross section. This study demonstrates the advantage of Sentinel-1 SAR with regards to imaging fine scale typhoon patterns on the sea surface beneath storm clouds. This paper also advocates the use of Sentinel-1 SAR data that is made freely and openly available worldwide for the first time in civilian SAR history.

  11. ANALYSIS OF MULTIPATH PIXELS IN SAR IMAGES

    Directory of Open Access Journals (Sweden)

    J. W. Zhao

    2016-06-01

    Full Text Available As the received radar signal is the sum of signal contributions overlaid in one single pixel regardless of the travel path, the multipath effect should be seriously tackled as the multiple bounce returns are added to direct scatter echoes which leads to ghost scatters. Most of the existing solution towards the multipath is to recover the signal propagation path. To facilitate the signal propagation simulation process, plenty of aspects such as sensor parameters, the geometry of the objects (shape, location, orientation, mutual position between adjacent buildings and the physical parameters of the surface (roughness, correlation length, permittivitywhich determine the strength of radar signal backscattered to the SAR sensor should be given in previous. However, it's not practical to obtain the highly detailed object model in unfamiliar area by field survey as it's a laborious work and time-consuming. In this paper, SAR imaging simulation based on RaySAR is conducted at first aiming at basic understanding of multipath effects and for further comparison. Besides of the pre-imaging simulation, the product of the after-imaging, which refers to radar images is also taken into consideration. Both Cosmo-SkyMed ascending and descending SAR images of Lupu Bridge in Shanghai are used for the experiment. As a result, the reflectivity map and signal distribution map of different bounce level are simulated and validated by 3D real model. The statistic indexes such as the phase stability, mean amplitude, amplitude dispersion, coherence and mean-sigma ratio in case of layover are analyzed with combination of the RaySAR output.

  12. BioSAR Airborne Biomass Sensing System

    Energy Technology Data Exchange (ETDEWEB)

    Graham, R.L.; Johnson, P.

    2007-05-24

    This CRADA was developed to enable ORNL to assist American Electronics, Inc. test a new technology--BioSAR. BioSAR is a an airborne, low frequency (80-120 MHz {approx} FM radio frequencies) synthetic aperture radar (SAR) technology which was designed and built for NASA by ZAI-Amelex under Patrick Johnson's direction. At these frequencies, leaves and small branches are nearly transparent and the majority of the energy reflected from the forest and returned to the radar is from the tree trunks. By measuring the magnitude of the back scatter, the volume of the tree trunk and therefore the biomass of the trunks can be inferred. The instrument was successfully tested on tropical rain forests in Panama. Patrick Johnson, with American Electronics, Inc received a Phase II SBIR grant from DOE Office of Climate Change to further test and refine the instrument. Mr Johnson sought ORNL expertise in measuring forest biomass in order for him to further validate his instrument. ORNL provided ground truth measurements of forest biomass at three locations--the Oak Ridge Reservation, Weyerhaeuser Co. commercial pine plantations in North Carolina, and American Energy and Power (AEP) Co. hardwood forests in southern Ohio, and facilitated flights over these forests. After Mr. Johnson processed the signal data from BioSAR instrument, the processed data were given to ORNL and we attempted to derive empirical relationships between the radar signals and the ground truth forest biomass measurements using standard statistical techniques. We were unsuccessful in deriving such relationships. Shortly before the CRADA ended, Mr Johnson discovered that FM signal from local radio station broadcasts had interfered with the back scatter measurements such that the bulk of the signal received by the BioSAR instrument was not backscatter from the radar but rather was local radio station signals.

  13. Challenges and Strategies of Laboratory Diagnosis for Newly Emerging Influenza Viruses in Taiwan: A Decade after SARS

    Directory of Open Access Journals (Sweden)

    Jih-Hui Lin

    2015-01-01

    Full Text Available Since the first case of severe acute respiratory syndrome (SARS in Taiwan was identified in March 2003, viral respiratory infections, in particular the influenza virus, have become a national public health concern. Taiwan would face a serious threat of public health problems if another SARS epidemic overlapped with a flu outbreak. After SARS, the Taiwan Centers for Disease Control accelerated and strengthened domestic research on influenza and expanded the exchange of information with international counterparts. The capacity of influenza A to cross species barriers presents a potential threat to human health. Given the mutations of avian flu viruses such as H7N9, H6N1, and H10N8, all countries, including Taiwan, must equip themselves to face a possible epidemic or pandemic. Such preparedness requires global collaboration.

  14. Aplicación de técnicas de biología molecular para la caracterización de la población microbiana en la degradación de compuestos orgánicos volátiles (COV) mediante biofiltros y biofiltros percoladores

    OpenAIRE

    Pérez Gil, María del Carmen

    2015-01-01

    Los compuestos orgánicos volátiles (COV) son unos de los principales contaminantes atmosféricos presentes en las emisiones gaseosas de una gran variedad de industrias. El conocimiento de los efectos nocivos que presentan estas sustancias sobre el medio ambiente y la salud humana ha tenido como consecuencia el desarrollo de normativas ambientales en la Unión Europea en relación al control de las emisiones industriales de COV. Esto ha originado, a su vez, el interés por el desarrollo de nuevas ...

  15. Severe acute respiratory syndrome (SARS): knowledge, attitudes, practices and sources of information among physicians answering a SARS fever hotline service.

    Science.gov (United States)

    Deng, J-F; Olowokure, B; Kaydos-Daniels, S C; Chang, H-J; Barwick, R S; Lee, M-L; Deng, C-Y; Factor, S H; Chiang, C-E; Maloney, S A

    2006-01-01

    In June 2003, Taiwan introduced a severe acute respiratory syndrome (SARS) telephone hotline service to provide concerned callers with rapid access to information, advice and appropriate referral where necessary. This paper reports an evaluation of the knowledge, attitude, practices and sources of information relating to SARS among physicians who staffed the SARS fever hotline service. A retrospective survey was conducted using a self-administered postal questionnaire. Participants were physicians who staffed a SARS hotline during the SARS epidemic in Taipei, Taiwan from June 1 to 10, 2003. A response rate of 83% was obtained. All respondents knew the causative agent of SARS, and knowledge regarding SARS features and preventive practices was good. However, only 54% of respondents knew the incubation period of SARS. Hospital guidelines and news media were the major information sources. In responding to two case scenarios most physicians were likely to triage callers at high risk of SARS appropriately, but not callers at low risk. Less than half of all respondents answered both scenarios correctly. The results obtained suggest that knowledge of SARS was generally good although obtained from both medical and non-medical sources. Specific knowledge was however lacking in certain areas and this affected the ability to appropriately triage callers. Standardized education and assessment of prior knowledge of SARS could improve the ability of physicians to triage callers in future outbreaks.

  16. SARS hCoV papain-like protease is a unique Lys48 linkage-specific di-distributive deubiquitinating enzyme.

    Science.gov (United States)

    Békés, Miklós; Rut, Wioletta; Kasperkiewicz, Paulina; Mulder, Monique P C; Ovaa, Huib; Drag, Marcin; Lima, Christopher D; Huang, Tony T

    2015-06-01

    Ubiquitin (Ub) and the Ub-like (Ubl) modifier interferon-stimulated gene 15 (ISG15) participate in the host defence of viral infections. Viruses, including the severe acute respiratory syndrome human coronavirus (SARS hCoV), have co-opted Ub-ISG15 conjugation pathways for their own advantage or have evolved effector proteins to counter pro-inflammatory properties of Ub-ISG15-conjugated host proteins. In the present study, we compare substrate specificities of the papain-like protease (PLpro) from the recently emerged Middle East respiratory syndrome (MERS) hCoV to the related protease from SARS, SARS PLpro. Through biochemical assays, we show that, similar to SARS PLpro, MERS PLpro is both a deubiquitinating (DUB) and a deISGylating enzyme. Further analysis of the intrinsic DUB activity of these viral proteases revealed unique differences between the recognition and cleavage specificities of polyUb chains. First, MERS PLpro shows broad linkage specificity for the cleavage of polyUb chains, whereas SARS PLpro prefers to cleave Lys48-linked polyUb chains. Secondly, MERS PLpro cleaves polyUb chains in a 'mono-distributive' manner (one Ub at a time) and SARS PLpro prefers to cleave Lys48-linked polyUb chains by sensing a di-Ub moiety as a minimal recognition element using a 'di-distributive' cleavage mechanism. The di-distributive cleavage mechanism for SARS PLpro appears to be uncommon among USP (Ub-specific protease)-family DUBs, as related USP family members from humans do not display such a mechanism. We propose that these intrinsic enzymatic differences between SARS and MERS PLpro will help to identify pro-inflammatory substrates of these viral DUBs and can guide in the design of therapeutics to combat infection by coronaviruses.

  17. Comparative genomics of Streptococcus pyogenes M1 isolates differing in virulence and propensity to cause systemic infection in mice.

    Science.gov (United States)

    Fiebig, Anne; Loof, Torsten G; Babbar, Anshu; Itzek, Andreas; Koehorst, Jasper J; Schaap, Peter J; Nitsche-Schmitz, D Patric

    2015-09-01

    Streptococcus pyogenes serotype M1 is a frequent cause of severe infections in humans. Some M1 isolates are pathogenic in mice and used in studies on infection pathogenesis. We observed marked differences in murine infections caused by M1 strain SF370, 5448, 5448AP or AP1 which prompted us to sequence the whole genome of isolates 5448 and AP1 for comparative analysis. Strain 5448 is known to acquire inactivating mutations in the CovRS two-component system during mouse infection, producing hypervirulent progeny such as 5448AP. Isolates AP1 and 5448AP, more than 5448, caused disseminating infections that became systemic and lethal. SF370 was not pathogenic. Phages caused gross genetic differences and increased the gene content of AP1 by 8% as compared to 5448 and SF370. Each of six examined M1 genomes contained two CRISPR-Cas systems. Phage insertion destroyed a type II CRISPR-Cas system in AP1 and other strains of serotypes M1, M3, M6 and M24, but not in M1 strains 5448, SF370, MGAS5005, A20 or M1 476. A resulting impaired defence against invading genetic elements could have led to the wealth of phages in AP1. AP1 lacks genetic features of the MGAS5005-like clonal complex including the streptodornase that drives selection for hypervirulent clones with inactivated CovRS system. Still, inactivating mutations in covS were a common genetic feature of AP1 and the MGAS5005-like isolate 5448AP. Abolished expression of the cysteine proteinase SpeB, due to CovRS inactivation could be a common cause for hypervirulence of the two isolates. Moreover, an additional protein H-coding gene and a mutation in the regulator gene rofA distinguished AP1 form other M1 isolates. In conclusion, hypervirulence of S. pyogenes M1 in mice is not limited to the MGAS5005-like genotype. Copyright © 2015 Elsevier GmbH. All rights reserved.

  18. Identification of phosphorylation sites in the nucleocapsid protein (N protein) of SARS-coronavirus

    Science.gov (United States)

    Lin, Liang; Shao, Jianmin; Sun, Maomao; Liu, Jinxiu; Xu, Gongjin; Zhang, Xumin; Xu, Ningzhi; Wang, Rong; Liu, Siqi

    2007-12-01

    partially clarified the argument regarding the phosphorylation possibility of the N protein during the infection process of SARS-CoV to human host.

  19. Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor.

    Science.gov (United States)

    Ge, Xing-Yi; Li, Jia-Lu; Yang, Xing-Lou; Chmura, Aleksei A; Zhu, Guangjian; Epstein, Jonathan H; Mazet, Jonna K; Hu, Ben; Zhang, Wei; Peng, Cheng; Zhang, Yu-Ji; Luo, Chu-Ming; Tan, Bing; Wang, Ning; Zhu, Yan; Crameri, Gary; Zhang, Shu-Yi; Wang, Lin-Fa; Daszak, Peter; Shi, Zheng-Li

    2013-11-28

    The 2002-3 pandemic caused by severe acute respiratory syndrome coronavirus (SARS-CoV) was one of the most significant public health events in recent history. An ongoing outbreak of Middle East respiratory syndrome coronavirus suggests that this group of viruses remains a key threat and that their distribution is wider than previously recognized. Although bats have been suggested to be the natural reservoirs of both viruses, attempts to isolate the progenitor virus of SARS-CoV from bats have been unsuccessful. Diverse SARS-like coronaviruses (SL-CoVs) have now been reported from bats in China, Europe and Africa, but none is considered a direct progenitor of SARS-CoV because of their phylogenetic disparity from this virus and the inability of their spike proteins to use the SARS-CoV cellular receptor molecule, the human angiotensin converting enzyme II (ACE2). Here we report whole-genome sequences of two novel bat coronaviruses from Chinese horseshoe bats (family: Rhinolophidae) in Yunnan, China: RsSHC014 and Rs3367. These viruses are far more closely related to SARS-CoV than any previously identified bat coronaviruses, particularly in the receptor binding domain of the spike protein. Most importantly, we report the first recorded isolation of a live SL-CoV (bat SL-CoV-WIV1) from bat faecal samples in Vero E6 cells, which has typical coronavirus morphology, 99.9% sequence identity to Rs3367 and uses ACE2 from humans, civets and Chinese horseshoe bats for cell entry. Preliminary in vitro testing indicates that WIV1 also has a broad species tropism. Our results provide the strongest evidence to date that Chinese horseshoe bats are natural reservoirs of SARS-CoV, and that intermediate hosts may not be necessary for direct human infection by some bat SL-CoVs. They also highlight the importance of pathogen-discovery programs targeting high-risk wildlife groups in emerging disease hotspots as a strategy for pandemic preparedness.

  20. Simulation of SAR backscatter for forest vegetation

    Science.gov (United States)

    Prajapati, Richa; Kumar, Shashi; Agrawal, Shefali

    2016-05-01

    Synthetic Aperture Radar (SAR) is one of the most recent imaging technology to study the forest parameters. The invincible characteristics of microwave acquisition in cloudy regions and night imaging makes it a powerful tool to study dense forest regions. A coherent combination of radar polarimetry and interferometry (PolInSAR) enhances the accuracy of retrieved biophysical parameters. This paper attempts to address the issue of estimation of forest structural information caused due to instability of radar platforms through simulation of SAR image. The Terai Central Forest region situated at Haldwani area in Uttarakhand state of India was chosen as the study area. The system characteristics of PolInSAR dataset of Radarsat-2 SAR sensor was used for simulation process. Geometric and system specifications like platform altitude, center frequency, mean incidence angle, azimuth and range resolution were taken from metadata. From the field data it was observed that average tree height and forest stand density were 25 m and 300 stems/ha respectively. The obtained simulated results were compared with the sensor acquired master and slave intensity images. It was analyzed that for co-polarized horizontal component (HH), the mean values of simulated and real master image had a difference of 0.3645 with standard deviation of 0.63. Cross-polarized (HV) channel showed better results with mean difference of 0.06 and standard deviation of 0.1 while co-polarized vertical component (VV) did not show similar values. In case of HV polarization, mean variation between simulated and real slave images was found to be the least. Since cross-polarized channel is more sensitive to vegetation feature therefore better simulated results were obtained for this channel. Further the simulated images were processed using PolInSAR inversion modelling approach using three different techniques DEM differencing, Coherence Amplitude Inversion and Random Volume over Ground Inversion. DEM differencing

  1. SAR Ice Classification Using Fuzzy Screening Method

    Science.gov (United States)

    Gill, R. S.

    2003-04-01

    A semi-automatic SAR sea ice classification algorithm is described. It is based on combining the information in the original SAR data with those in the three 'image' products derived from it, namely Power-to-Mean Ratio (PMR), the Gamma distribution and the second order texture parameter entropy, respectively. The latter products contain information which is often useful during the manual interpretation of the images. The technique used to fuse the information in these products is based on a method c lled Multi Experts Multi Criteria Decision Making fuzzy a screening. The Multiple Experts in this case are the above four 'image' products. The two criteria used currently for making decisions are the Kolmogorov-Smirnov distribution matching and the statistical mean of different surface classes. The algorithm classifies an image into any number of predefined classes of sea ice and open water. The representative classes of these surface types are manually identified by the user. Further, as SAR signals from sea ice covered regions and open water are ambiguous, it was found that a minimum of 4 pre-identified surface classes (calm and turbulent water and sea ice with low and high backscatter values) are required to accurately classify an image. Best results are obtained when a total of 8 surface classes (2 each of sea ice and open water in the near range and a similar number in the far range of the SAR image) are used. The main advantage of using this image classification scheme is that, like neural networks, no prior knowledge is required of the statistical distribution of the different surface types. Furthermore, unlike the methods based on neural networks, no prior data sets are required to train the algorithm. All the information needed for image classification by the method is contained in the individual SAR images and associated products. Initial results illustrating the potential of this ice classification algorithm using the RADARSAT ScanSAR Wide data are presented

  2. Spaceborne Polarimetric SAR Interferometry: Performance Analysis and Mission Concepts

    Directory of Open Access Journals (Sweden)

    Cloude Shane R

    2005-01-01

    Full Text Available We investigate multichannel imaging radar systems employing coherent combinations of polarimetry and interferometry (Pol-InSAR. Such systems are well suited for the extraction of bio- and geophysical parameters by evaluating the combined scattering from surfaces and volumes. This combination leads to several important differences between the design of Pol-InSAR sensors and conventional single polarisation SAR interferometers. We first highlight these differences and then investigate the Pol-InSAR performance of two proposed spaceborne SAR systems (ALOS/PalSAR and TerraSAR-L operating in repeat-pass mode. For this, we introduce the novel concept of a phase tube which enables (1 a quantitative assessment of the Pol-InSAR performance, (2 a comparison between different sensor configurations, and (3 an optimization of the instrument settings for different Pol-InSAR applications. The phase tube may hence serve as an interface between system engineers and application-oriented scientists. The performance analysis reveals major limitations for even moderate levels of temporal decorrelation. Such deteriorations may be avoided in single-pass sensor configurations and we demonstrate the potential benefits from the use of future bi- and multistatic SAR interferometers.

  3. Federated query services provided by the Seamless SAR Archive project

    Science.gov (United States)

    Baker, S.; Bryson, G.; Buechler, B.; Meertens, C. M.; Crosby, C. J.; Fielding, E. J.; Nicoll, J.; Youn, C.; Baru, C.

    2013-12-01

    The NASA Advancing Collaborative Connections for Earth System Science (ACCESS) seamless synthetic aperture radar (SAR) archive (SSARA) project is a 2-year collaboration between UNAVCO, the Alaska Satellite Facility (ASF), the Jet Propulsion Laboratory (JPL), and OpenTopography at the San Diego Supercomputer Center (SDSC) to design and implement a seamless distributed access system for SAR data and derived data products (i.e. interferograms). A major milestone for the first year of the SSARA project was a unified application programming interface (API) for SAR data search and results at ASF and UNAVCO (WInSAR and EarthScope data archives) through the use of simple web services. A federated query service was developed using the unified APIs, providing users a single search interface for both archives (http://www.unavco.org/ws/brokered/ssara/sar/search). A command line client that utilizes this new service is provided as an open source utility for the community on GitHub (https://github.com/bakerunavco/SSARA). Further API development and enhancements added more InSAR specific keywords and quality control parameters (Doppler centroid, faraday rotation, InSAR stack size, and perpendicular baselines). To facilitate InSAR processing, the federated query service incorporated URLs for DEM (from OpenTopography) and tropospheric corrections (from the JPL OSCAR service) in addition to the URLs for SAR data. This federated query service will provide relevant QC metadata for selecting pairs of SAR data for InSAR processing and all the URLs necessary for interferogram generation. Interest from the international community has prompted an effort to incorporate other SAR data archives (the ESA Virtual Archive 4 and the DLR TerraSAR-X_SSC Geohazard Supersites and Natural Laboratories collections) into the federated query service which provide data for researchers outside the US and North America.

  4. SarA is a negative regulator of Staphylococcus epidermidis biofilm formation

    DEFF Research Database (Denmark)

    Martin, Christer; Heinze, C.; Busch, M.

    2012-01-01

    Biofilm formation is essential for Staphylococcus epidermidis pathogenicity in implant-associated infections. Nonetheless, large proportions of invasive S. epidermidis isolates fail to show accumulative biofilm growth in vitro. We here tested the hypothesis that this apparent paradox is related...... to the existence of superimposed regulatory systems suppressing a multi-cellular biofilm life style in vitro. Transposon mutagenesis of clinical significant but biofilm-negative S. epidermidis 1585 was used to isolate a biofilm positive mutant carrying a Tn917 insertion in sarA,chief regulator of staphylococcal...... virulence. Genetic analysis revealed that inactivation of sarA induced biofilm formation via over-expression of the giant 1 MDa extracellular matrix binding protein (Embp), serving as an intercellular adhesin. In addition to Embp, increased extracellular DNA (eDNA) release significantly contributed...

  5. The flight test of Pi-SAR(L) for the repeat-pass interferometric SAR

    Science.gov (United States)

    Nohmi, Hitoshi; Shimada, Masanobu; Miyawaki, Masanori

    2006-09-01

    This paper describes the experiment of the repeat pass interferometric SAR using Pi-SAR(L). The air-borne repeat-pass interferometric SAR is expected as an effective method to detect landslide or predict a volcano eruption. To obtain a high-quality interferometric image, it is necessary to make two flights on the same flight pass. In addition, since the antenna of the Pi-SAR(L) is secured to the aircraft, it is necessary to fly at the same drift angle to keep the observation direction same. We built a flight control system using an auto pilot which has been installed in the airplane. This navigation system measures position and altitude precisely with using a differential GPS, and the PC Navigator outputs a difference from the desired course to the auto pilot. Since the air density is thinner and the speed is higher than the landing situation, the gain of the control system is required to be adjusted during the repeat pass flight. The observation direction could be controlled to some extent by adjusting a drift angle with using a flight speed control. The repeat-pass flight was conducted in Japan for three days in late November. The flight was stable and the deviation was within a few meters for both horizontal and vertical direction even in the gusty condition. The SAR data were processed in time domain based on range Doppler algorism to make the complete motion compensation. Thus, the interferometric image processed after precise phase compensation is shown.

  6. SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum.

    Directory of Open Access Journals (Sweden)

    Kèvin Knoops

    2008-09-01

    Full Text Available Positive-strand RNA viruses, a large group including human pathogens such as SARS-coronavirus (SARS-CoV, replicate in the cytoplasm of infected host cells. Their replication complexes are commonly associated with modified host cell membranes. Membrane structures supporting viral RNA synthesis range from distinct spherular membrane invaginations to more elaborate webs of packed membranes and vesicles. Generally, their ultrastructure, morphogenesis, and exact role in viral replication remain to be defined. Poorly characterized double-membrane vesicles (DMVs were previously implicated in SARS-CoV RNA synthesis. We have now applied electron tomography of cryofixed infected cells for the three-dimensional imaging of coronavirus-induced membrane alterations at high resolution. Our analysis defines a unique reticulovesicular network of modified endoplasmic reticulum that integrates convoluted membranes, numerous interconnected DMVs (diameter 200-300 nm, and "vesicle packets" apparently arising from DMV merger. The convoluted membranes were most abundantly immunolabeled for viral replicase subunits. However, double-stranded RNA, presumably revealing the site of viral RNA synthesis, mainly localized to the DMV interior. Since we could not discern a connection between DMV interior and cytosol, our analysis raises several questions about the mechanism of DMV formation and the actual site of SARS-CoV RNA synthesis. Our data document the extensive virus-induced reorganization of host cell membranes into a network that is used to organize viral replication and possibly hide replicating RNA from antiviral defense mechanisms. Together with biochemical studies of the viral enzyme complex, our ultrastructural description of this "replication network" will aid to further dissect the early stages of the coronavirus life cycle and its virus-host interactions.

  7. SAR Target Recognition via Supervised Discriminative Dictionary Learning and Sparse Representation of the SAR-HOG Feature

    Directory of Open Access Journals (Sweden)

    Shengli Song

    2016-08-01

    Full Text Available Automatic target recognition (ATR in synthetic aperture radar (SAR images plays an important role in both national defense and civil applications. Although many methods have been proposed, SAR ATR is still very challenging due to the complex application environment. Feature extraction and classification are key points in SAR ATR. In this paper, we first design a novel feature, which is a histogram of oriented gradients (HOG-like feature for SAR ATR (called SAR-HOG. Then, we propose a supervised discriminative dictionary learning (SDDL method to learn a discriminative dictionary for SAR ATR and propose a strategy to simplify the optimization problem. Finally, we propose a SAR ATR classifier based on SDDL and sparse representation (called SDDLSR, in which both the reconstruction error and the classification error are considered. Extensive experiments are performed on the MSTAR database under standard operating conditions and extended operating conditions. The experimental results show that SAR-HOG can reliably capture the structures of targets in SAR images, and SDDL can further capture subtle differences among the different classes. By virtue of the SAR-HOG feature and SDDLSR, the proposed method achieves the state-of-the-art performance on MSTAR database. Especially for the extended operating conditions (EOC scenario “Training 17 ∘ —Testing 45 ∘ ”, the proposed method improves remarkably with respect to the previous works.

  8. SAR impulse response with residual chirps.

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin Walter

    2009-06-01

    A Linear Frequency-Modulated (LFM) chirp is a function with unit amplitude and quadratic phase characteristic. In a focused Synthetic Aperture Radar (SAR) image, a residual chirp is undesired for targets of interest, as it coarsens the manifested resolution. However, for undesired spurious signals, a residual chirp is often advantageous because it spreads the energy and thereby diminishes its peak value. In either case, a good understanding of the effects of a residual LFM chirp on a SAR Impulse Response (IPR) is required to facilitate system analysis and design. This report presents an analysis of the effects of a residual chirp on the IPR. As reference, there is a rich body of publications on various aspects of LFM chirps. A quick search reveals a plethora of articles, going back to the early 1950s. We mention here purely as trivia one of the earlier analysis papers on this waveform by Klauder, et al.

  9. MCA: a multichannel approach to SAR autofocus.

    Science.gov (United States)

    Morrison, Robert L; Do, Minh N; Munson, David C

    2009-04-01

    We present a new noniterative approach to synthetic aperture radar (SAR) autofocus, termed the multichannel autofocus (MCA) algorithm. The key in the approach is to exploit the multichannel redundancy of the defocusing operation to create a linear subspace, where the unknown perfectly focused image resides, expressed in terms of a known basis formed from the given defocused image. A unique solution for the perfectly focused image is then directly determined through a linear algebraic formulation by invoking an additional image support condition. The MCA approach is found to be computationally efficient and robust and does not require prior assumptions about the SAR scene used in existing methods. In addition, the vector-space formulation of MCA allows sharpness metric optimization to be easily incorporated within the restoration framework as a regularization term. We present experimental results characterizing the performance of MCA in comparison with conventional autofocus methods and discuss the practical implementation of the technique.

  10. How SARS Taught Me to Cook

    Institute of Scientific and Technical Information of China (English)

    GUAVALEE

    2003-01-01

    DURING the week-long May Day holiday I usually hold a party, or enjoy the good weather on outings with friends, but thanks to the SARS epidemic in Beijing this year, I stayed at home the entire May Day holiday. It was no problem finding something to do with my ample spare time, as I can surf the Internet for hours on end. My biggest headache was eating.Having dined in cafeterias and restaurants for the previous ten years or so, I had never learned to cook, but as SARS had begun to spread in Beijing in late April, the cafeteria in my work unit and most restaurants were closed for the holiday.

  11. Non-parametric partitioning of SAR images

    Science.gov (United States)

    Delyon, G.; Galland, F.; Réfrégier, Ph.

    2006-09-01

    We describe and analyse a generalization of a parametric segmentation technique adapted to Gamma distributed SAR images to a simple non parametric noise model. The partition is obtained by minimizing the stochastic complexity of a quantized version on Q levels of the SAR image and lead to a criterion without parameters to be tuned by the user. We analyse the reliability of the proposed approach on synthetic images. The quality of the obtained partition will be studied for different possible strategies. In particular, one will discuss the reliability of the proposed optimization procedure. Finally, we will precisely study the performance of the proposed approach in comparison with the statistical parametric technique adapted to Gamma noise. These studies will be led by analyzing the number of misclassified pixels, the standard Hausdorff distance and the number of estimated regions.

  12. Automated preprocessing of spaceborne SAR data

    Science.gov (United States)

    Curlander, J. C.; Wu, C.; Pang, A.

    1982-01-01

    An efficient algorithm has been developed for estimation of the echo phase delay in spaceborne synthetic aperture radar (SAR) data. This algorithm utilizes the spacecraft ephemeris data and the radar echo data to produce estimates of two parameters: (1) the centroid of the Doppler frequency spectrum f(d) and (2) the Doppler frequency rate. Results are presented from tests conducted with Seasat SAR data. The test data indicates that estimation accuracies of 3 Hz for f(d) and 0.3 Hz/sec for the Doppler frequency rate are attainable. The clutterlock and autofocus techniques used for estimation of f(d) and the Doppler frequency rate, respectively are discussed and the algorithm developed for optimal implementation of these techniques is presented.

  13. SARS: Safeguards Accounting and Reporting Software

    Science.gov (United States)

    Mohammedi, B.; Saadi, S.; Ait-Mohamed, S.

    In order to satisfy the requirements of the SSAC (State System for Accounting and Control of nuclear materials), for recording and reporting objectives; this computer program comes to bridge the gape between nuclear facilities operators and national inspection verifying records and delivering reports. The SARS maintains and generates at-facility safeguards accounting records and generates International Atomic Energy Agency (IAEA) safeguards reports based on accounting data input by the user at any nuclear facility. A database structure is built and BORLAND DELPHI programming language has been used. The software is designed to be user-friendly, to make extensive and flexible management of menus and graphs. SARS functions include basic physical inventory tacking, transaction histories and reporting. Access controls are made by different passwords.

  14. Estimating the Doppler centroid of SAR data

    DEFF Research Database (Denmark)

    Madsen, Søren Nørvang

    1989-01-01

    After reviewing frequency-domain techniques for estimating the Doppler centroid of synthetic-aperture radar (SAR) data, the author describes a time-domain method and highlights its advantages. In particular, a nonlinear time-domain algorithm called the sign-Doppler estimator (SDE) is shown to have...... attractive properties. An evaluation based on an existing SEASAT processor is reported. The time-domain algorithms are shown to be extremely efficient with respect to requirements on calculations and memory, and hence they are well suited to real-time systems where the Doppler estimation is based on raw SAR...... data. For offline processors where the Doppler estimation is performed on processed data, which removes the problem of partial coverage of bright targets, the ΔE estimator and the CDE (correlation Doppler estimator) algorithm give similar performance. However, for nonhomogeneous scenes it is found...

  15. Fast SAR Imaging Algorithm for FLGPR

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    A fast SAR imaging algorithm for near- field subsurface forward-looking ground penetrating radar (FLGPR) is presented. By using nonstationary convolution filter, the refocused image spectrum can be reconstructed directly from the backscattered signal spectrum of target area. The experimental results show the proposed method can fast achieve image refocusing. Also it has higher computational efficiency than the phase-shift migration approach and the delay-and-sum (DAS) approach.

  16. Adaptive Filter in SAR Interferometry Derived DEM

    Institute of Scientific and Technical Information of China (English)

    XU Caijun; WANG Hua; WANG Jianglin; GE Linlin

    2005-01-01

    In this paper, the performance of median filter, elevation dependent adaptive sigma median filter, and directionally dependent adaptive sigma median filter are tested on both InSAR Tandem DEM and simulated high-level noisy DEM. Through the comparison, the directionally dependent adaptive sigma median filter is proved to be the most effective one not only in the noise removing but also in the boundary preserve.

  17. Bistatic SAR tomography: processing and experimental results

    OpenAIRE

    Duque Biarge, Sergio; López Dekker, Francisco J.; Merlano Duncan, Juan Carlos; Mallorquí Franquet, Jordi Joan

    2010-01-01

    This paper presents across-track tomography applied to a bistatic geometry with fixed receivers. This kind of geometry can overcome some of the classical monostatic tomography limitations such as temporal decorrelation and irregular baseline distribution. The Remote Sensing Laboratory (RSLab)of the Universitat Politècnica de Catalunya (UPC) has implemented a SAR Bistatic Receiver for INterferometric Applications,SABRINA, with 4-channels. SABRINA has been used to carry out a bistatic tomogr...

  18. Multiplier-free filters for wideband SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Christensen, Erik Lintz

    2001-01-01

    This paper derives a set of parameters to be optimized when designing filters for digital demodulation and range prefiltering in SAR systems. Aiming at an implementation in field programmable gate arrays (FPGAs), an approach for the design of multiplier-free filters is outlined. Design results ar...... are presented in terms of filter complexity and performance. One filter has been coded in VHDL and preliminary results indicate that the filter can meet a 2 GHz input sample rate....

  19. Digital demodulator for wide bandwidth SAR

    DEFF Research Database (Denmark)

    Jørgensen, Jørn Hjelm

    2000-01-01

    A novel approach to the design of efficient digital quadrature demodulators for wide bandwidth SAR systems is described. Efficiency is obtained by setting the intermediate frequency to 1/4 the ADC sampling frequency. One channel is made filter-free by synchronizing the local oscillator...... with the output decimator. The filter required by the other channel is optimized through global search using the system level performance metrics integrated sidelobe level ratio (ISLR) and peak sidelobe level ratio (PSLR)....

  20. SAR Product Improvements and Enhancements - SARprises

    Science.gov (United States)

    2013-09-30

    paper on current fields at Orkney, Scotland, was accepted for publication in IEEE - TGARS and is currently in press (available on IEEE Xplore as Early...Sea surface velocity vector retrieval using dual-beam interferometry: First demonstration, IEEE TGARS, 43, 2494- 2502, 2005. [2] Chapron, B., F...Bight by airborne along-track interferometric SAR, Proc. IGARSS 2002, 1822-1824, IEEE , 2002. [4] Bjerklie, D.M., S.L. Dingman, C.J. Vorosmarty, C.H

  1. Low-SAR metamaterial-inspired printed monopole antenna

    Science.gov (United States)

    Hossain, M. I.; Faruque, M. R. I.; Islam, M. T.; Ali, M. T.

    2017-01-01

    In this paper, a low-SAR metamaterial-embedded planar monopole antenna is introduced for a wireless communication system. A printed monopole antenna is designed for modern mobile, which operates in GSM, UMTS, LTE, WLAN, and Bluetooth frequency bands. A metamaterial structure is designed to use in the mobile handset with a multi-band printed monopole antenna. The finite integration technique of the CST microwave studio is used in this study. The measurement of antenna performances is taken in an anechoic chamber, and the SAR values are measured using COMOSAR system. The results indicate that metamaterial structure leads to reduce SAR without affecting antenna performance significantly. According to the measured results, the metamaterial attachment leads to reduce 87.7% peak SAR, 68.2% 1-g SAR, and 46.78% 10-g SAR compared to antenna without metamaterial.

  2. Efficient Bistatic SAR Raw Signal Simulator of Extended Scenes

    Directory of Open Access Journals (Sweden)

    Liang Yang

    2014-01-01

    Full Text Available Bistatic SAR system is a new mode that allocates the radar transmitter and receiver on different platforms and has more advantages compared to the monostatic case. However, the existing bistatic SAR raw data simulator in the frequency domain can only handle the case of translation invariant system. In this paper, an efficient 2D frequency-domain raw data simulator of extended scenes for bistatic SAR of translation variant system is proposed by a geometric transformation method for the first time, where inverse STOLT interpolation is used to formulate the range migration terms. The presented simulator can accommodate the translation variant bistatic SAR system compared with existing bistatic SAR simulator. And it is more efficient than the time domain one by making use of Fast Fourier Transform (FFT. Simulation results for point targets and a real SAR image demonstrate its validity and effectiveness.

  3. SARS epidemical forecast research in mathematical model

    Institute of Scientific and Technical Information of China (English)

    DING Guanghong; LIU Chang; GONG Jianqiu; WANG Ling; CHENG Ke; ZHANG Di

    2004-01-01

    The SIJR model, simplified from the SEIJR model, is adopted to analyze the important parameters of the model of SARS epidemic such as the transmission rate, basic reproductive number. And some important parameters are obtained such as the transmission rate by applying this model to analyzing the situation in Hong Kong, Singapore and Canada at the outbreak of SARS. Then forecast of the transmission of SARS is drawn out here by the adjustment of parameters (such as quarantined rate) in the model. It is obvious that inflexion lies on the crunode of the graph, which indicates the big difference in transmission characteristics between the epidemic under control and not under control. This model can also be used in the comparison of the control effectiveness among different regions. The results from this model match well with the actual data in Hong Kong, Singapore and Canada and as a by-product, the index of the effectiveness of control in the later period can be acquired. It offers some quantitative indexes, which may help the further research in epidemic diseases.

  4. Monitoring Building Deformation with InSAR: Experiments and Validation.

    Science.gov (United States)

    Yang, Kui; Yan, Li; Huang, Guoman; Chen, Chu; Wu, Zhengpeng

    2016-12-20

    Synthetic Aperture Radar Interferometry (InSAR) techniques are increasingly applied for monitoring land subsidence. The advantages of InSAR include high accuracy and the ability to cover large areas; nevertheless, research validating the use of InSAR on building deformation is limited. In this paper, we test the monitoring capability of the InSAR in experiments using two landmark buildings; the Bohai Building and the China Theater, located in Tianjin, China. They were selected as real examples to compare InSAR and leveling approaches for building deformation. Ten TerraSAR-X images spanning half a year were used in Permanent Scatterer InSAR processing. These extracted InSAR results were processed considering the diversity in both direction and spatial distribution, and were compared with true leveling values in both Ordinary Least Squares (OLS) regression and measurement of error analyses. The detailed experimental results for the Bohai Building and the China Theater showed a high correlation between InSAR results and the leveling values. At the same time, the two Root Mean Square Error (RMSE) indexes had values of approximately 1 mm. These analyses show that a millimeter level of accuracy can be achieved by means of InSAR technique when measuring building deformation. We discuss the differences in accuracy between OLS regression and measurement of error analyses, and compare the accuracy index of leveling in order to propose InSAR accuracy levels appropriate for monitoring buildings deformation. After assessing the advantages and limitations of InSAR techniques in monitoring buildings, further applications are evaluated.

  5. Efficient Bistatic SAR Raw Signal Simulator of Extended Scenes

    OpenAIRE

    Liang Yang; Weidong Yu; Shichao Zheng; Lei Zhang

    2014-01-01

    Bistatic SAR system is a new mode that allocates the radar transmitter and receiver on different platforms and has more advantages compared to the monostatic case. However, the existing bistatic SAR raw data simulator in the frequency domain can only handle the case of translation invariant system. In this paper, an efficient 2D frequency-domain raw data simulator of extended scenes for bistatic SAR of translation variant system is proposed by a geometric transformation method for the first t...

  6. InSAR Scientific Computing Environment

    Science.gov (United States)

    Gurrola, E. M.; Rosen, P. A.; Sacco, G.; Zebker, H. A.; Simons, M.; Sandwell, D. T.

    2010-12-01

    The InSAR Scientific Computing Environment (ISCE) is a software development effort in its second year within the NASA Advanced Information Systems and Technology program. The ISCE will provide a new computing environment for geodetic image processing for InSAR sensors that will enable scientists to reduce measurements directly from radar satellites and aircraft to new geophysical products without first requiring them to develop detailed expertise in radar processing methods. The environment can serve as the core of a centralized processing center to bring Level-0 raw radar data up to Level-3 data products, but is adaptable to alternative processing approaches for science users interested in new and different ways to exploit mission data. The NRC Decadal Survey-recommended DESDynI mission will deliver data of unprecedented quantity and quality, making possible global-scale studies in climate research, natural hazards, and Earth's ecosystem. The InSAR Scientific Computing Environment is planned to become a key element in processing DESDynI data into higher level data products and it is expected to enable a new class of analyses that take greater advantage of the long time and large spatial scales of these new data, than current approaches. At the core of ISCE is both legacy processing software from the JPL/Caltech ROI_PAC repeat-pass interferometry package as well as a new InSAR processing package containing more efficient and more accurate processing algorithms being developed at Stanford for this project that is based on experience gained in developing processors for missions such as SRTM and UAVSAR. Around the core InSAR processing programs we are building object-oriented wrappers to enable their incorporation into a more modern, flexible, extensible software package that is informed by modern programming methods, including rigorous componentization of processing codes, abstraction and generalization of data models, and a robust, intuitive user interface with

  7. Risk Factors for SARS-Related Deaths in 2003, Beijing

    Institute of Scientific and Technical Information of China (English)

    MIN LIU; WAN-NIAN LIANG; QI CHEN; XUE-QIN XIE; JIANG WU; XIONG HE; ZE-JUN LIU

    2006-01-01

    Objective To study the potential risk factors for severe acute respiratory syndromes (SARS)-related deaths in Beijing. Methods Epidemiological data were collected among the confirmed SARS patients officially reported by Beijing Centers for Disease Control and Prevention (BCDC), and information was also supplemented by a follow-up case survey. Chi-square test and multivariate stepwise logistic regression analysis were performed. Results Old age (over 60 years) was found to be significantly associated with SARS-related deaths in the univariate analysis. Also, history of contacting SARS patients within 2 weeks prior to the onset of illness, health occupation, and inferior hospital ranking as well as longer interval of clinic consulting (longer than 1 day) were the risk factors for SARS-related deaths. Multivariate stepwise logistic regression analysis found four risk factors for SARS-related deaths. Conclusion Old age (over 60 years) is the major risk factor for SARS-related deaths.Moreover, hospital health workers, the designated hospitals for SARS clinical services and the interval of consulting doctors (less than 1 day) are protective factors for surviving from SARS.

  8. Geometric registration and rectification of spaceborne SAR imagery

    Science.gov (United States)

    Curlander, J. C.; Pang, S. N.

    1982-01-01

    This paper describes the development of automated location and geometric rectification techniques for digitally processed synthetic aperture radar (SAR) imagery. A software package has been developed that is capable of determining the absolute location of an image pixel to within 60 m using only the spacecraft ephemeris data and the characteristics of the SAR data collection and processing system. Based on this location capability algorithms have been developed that geometrically rectify the imagery, register it to a common coordinate system and mosaic multiple frames to form extended digital SAR maps. These algorithms have been optimized using parallel processing techniques to minimize the operating time. Test results are given using Seasat SAR data.

  9. Landslide Inventory and Monitoring Using Sentinel-1 SAR Imagery

    Science.gov (United States)

    Monserrat, Oriol; Crosetto, Michele; Devanthery, Nuria; Cuevas-Gonzalez, Maria; Barra, Anna; Crippa, Bruno

    2016-08-01

    An important application of differential SAR interferometry (DInSAR) and Persistent Scatterer Interferometry is landslide detection and monitoring. Several studies have been published, which make use of the entire spectrum of SAR data types available in the last 25 years. This paper describes a procedure to update landslide inventory maps using Sentinel-1 data. The paper briefly discusses the main advantages of the Sentinel-1 SAR data. Then it describes the data analysis procedure used to update landslide inventory maps using interferometric data and a number of additional information layers. The effectiveness of the procedure is illustrated by the results of a study area located in the Molise region, in Southern Italy.

  10. Bistatic SAR: State of the Art and Development Trend

    Directory of Open Access Journals (Sweden)

    Zeng Tao

    2012-12-01

    Full Text Available Bistatic SAR (BiSAR systems have attracted the interests from global researchers and become a hotspot in the international radar community due to the progress of radar technology and rapidly increased applications nowadays. Based on the BiSAR experiments and breakthrough of the key technology, the paper summarized the general progresses of BiSAR systems, especially in European radar community, from different aspects such as system design, processing idea and topology etc. Different bistatic image formation algorithms have been analyzed and reviewed. Finally, the development trend is discussed in the paper.

  11. Motion measurement errors and autofocus in bistatic SAR.

    Science.gov (United States)

    Rigling, Brian D; Moses, Randolph L

    2006-04-01

    This paper discusses the effect of motion measurement errors (MMEs) on measured bistatic synthetic aperture radar (SAR) phase history data that has been motion compensated to the scene origin. We characterize the effect of low-frequency MMEs on bistatic SAR images, and, based on this characterization, we derive limits on the allowable MMEs to be used as system specifications. Finally, we demonstrate that proper orientation of a bistatic SAR image during the image formation process allows application of monostatic SAR autofocus algorithms in postprocessing to mitigate image defocus.

  12. Coastline detection in SAR images using discriminant cuts segmentation

    Science.gov (United States)

    Ding, Xianwen; Zou, Xiaolin; Yu, Tan

    2016-11-01

    The discriminant cut algorithm is used to detect coastlines in synthetic aperture radar (SAR) images. The proposed approach is a region-based one, which is able to capture and utilize spatial information in the image. The real SAR images, e.g. ALOS-1 PALSAR and COSMO-SkyMed SAR images, together with in-situ GPS data were collected and used to validate the performance of the proposed approach for coastline detection in SAR images. The accuracy is better than 4 times the image resolution. The efficiency is also tested.

  13. Crop identification of SAR data using digital textural analysis

    Science.gov (United States)

    Nuesch, D. R.

    1983-01-01

    After preprocessing SEASAT SAR data which included slant to ground range transformation, registration to LANDSAT MSS data and appropriate filtering of the raw SAR data to minimize coherent speckle, textural features were developed based upon the spatial gray level dependence method (SGLDM) to compute entropy and inertia as textural measures. It is indicated that the consideration of texture features are very important in SAR data analysis. The SEASAT SAR data are useful for the improvement of field boundary definitions and for an earlier season estimate of corn and soybean area location than is supported by LANDSAT alone.

  14. Prevalence and phylogeny of coronaviruses in wild birds from the Bering Strait area (Beringia.

    Directory of Open Access Journals (Sweden)

    Shaman Muradrasoli

    Full Text Available Coronaviruses (CoVs can cause mild to severe disease in humans and animals, their host range and environmental spread seem to have been largely underestimated, and they are currently being investigated for their potential medical relevance. Infectious bronchitis virus (IBV belongs to gamma-coronaviruses and causes a costly respiratory viral disease in chickens. The role of wild birds in the epidemiology of IBV is poorly understood. In the present study, we examined 1,002 cloacal and faecal samples collected from 26 wild bird species in the Beringia area for the presence of CoVs, and then we performed statistical and phylogenetic analyses. We detected diverse CoVs by RT-PCR in wild birds in the Beringia area. Sequence analysis showed that the detected viruses are gamma-coronaviruses related to IBV. These findings suggest that wild birds are able to carry gamma-coronaviruses asymptomatically. We concluded that CoVs are widespread among wild birds in Beringia, and their geographic spread and frequency is higher than previously realised. Thus, Avian CoV can be efficiently disseminated over large distances and could be a genetic reservoir for future emerging pathogenic CoVs. Considering the great animal health and economic impact of IBV as well as the recent emergence of novel coronaviruses such as SARS-coronavirus, it is important to investigate the role of wildlife reservoirs in CoV infection biology and epidemiology.

  15. Identification of an HLA-A* 0201-restricted CD8+ T-cell epitope SSp-1 of SARS-CoV spike protein

    Institute of Scientific and Technical Information of China (English)

    Wang B; Yu Y; Wang X; Yang R; Cao X; Chen H; Jiang X; Zhang M; Wan T; Li N; Zhou X; Wu Y; Yang F

    2004-01-01

    A novel coronavirus, severe acute respiratory syndrome (SARS)-associated coronavirus (SARS-CoV), has been identified as the causal agent of SARS. Spike (S) protein is a major structural glycoprotein of the SARS virus and a potential target for SARS-specific cell-mediated immune responses. A panel of S protein-derived peptides was tested for their binding affinity to HLA-A * 0201 molecules. Peptides with high affinity for HLA-A * 0201 were then assessed for their capacity to elicit specific immune responses mediated by cytotoxic T lymphocytes (CTLs) both in vivo, in HLA-A2. 1/Kb transgenic mice, and in vitro, from peripheral blood lymphocytes (PBLs) harvested from healthy HLA-A2.1 + donors. SARS-CoV protein-derived peptide-1 (SSp-1 RLNEVAKNL), induced peptide-specific CTLs both in vivo (transgenic mice) and in vitro (human PBLs), which specifically released interferon-gamma (IFN-gamma) upon stimulation with SSp-1-pulsed autologous dendritic cells (DCs) or T2 cells. SSp-1-specific CTLs also lysed major histocompatibility complex (MHC)-matched tumor cell lines engineered to express S proteins. HLA-A * 0201-SSp-1 tetramer staining revealed the presence of significant populations of SSp-1-specific CTLs in SSp-1-induced CD8+ T cells. We propose that the newly identified epitope SSp-1 will help in the characterization of virus control mechanisms and immunopathology in SARS-CoV infection, and may be relevant to the development of immunotherapeutic approaches for SARS.

  16. MULTI-TEMPORAL SAR INTERFEROMETRY FOR LANDSLIDE MONITORING

    Directory of Open Access Journals (Sweden)

    R. Dwivedi

    2016-06-01

    Full Text Available In the past few years, SAR Interferometry specially InSAR and D-InSAR were extensively used for deformation monitoring related applications. Due to temporal and spatial decorrelation in dense vegetated areas, effectiveness of InSAR and D-InSAR observations were always under scrutiny. Multi-temporal InSAR methods are developed in recent times to retrieve the deformation signal from pixels with different scattering characteristics. Presently, two classes of multi-temporal InSAR algorithms are available- Persistent Scatterer (PS and Small Baseline (SB methods. This paper discusses the Stanford Method for Persistent Scatterer (StaMPS based PS-InSAR and the Small Baselines Subset (SBAS techniques to estimate the surface deformation in Tehri dam reservoir region in Uttarkhand, India. Both PS-InSAR and SBAS approaches used sixteen ENVISAT ASAR C-Band images for generating single master and multiple master interferograms stack respectively and their StaMPS processing resulted in time series 1D-Line of Sight (LOS mean velocity maps which are indicative of deformation in terms of movement towards and away from the satellites. From 1D LOS velocity maps, localization of landslide is evident along the reservoir rim area which was also investigated in the previous studies. Both PS-InSAR and SBAS effectively extract measurement pixels in the study region, and the general results provided by both approaches show a similar deformation pattern along the Tehri reservoir region. Further, we conclude that StaMPS based PS-InSAR method performs better in terms of extracting more number of measurement pixels and in the estimation of mean Line of Sight (LOS velocity as compared to SBAS method. It is also proposed to take up a few major landslides area in Uttarakhand for slope stability assessment.

  17. Multi-Temporal SAR Interferometry for Landslide Monitoring

    Science.gov (United States)

    Dwivedi, R.; Narayan, A. B.; Tiwari, A.; Dikshit, O.; Singh, A. K.

    2016-06-01

    In the past few years, SAR Interferometry specially InSAR and D-InSAR were extensively used for deformation monitoring related applications. Due to temporal and spatial decorrelation in dense vegetated areas, effectiveness of InSAR and D-InSAR observations were always under scrutiny. Multi-temporal InSAR methods are developed in recent times to retrieve the deformation signal from pixels with different scattering characteristics. Presently, two classes of multi-temporal InSAR algorithms are available- Persistent Scatterer (PS) and Small Baseline (SB) methods. This paper discusses the Stanford Method for Persistent Scatterer (StaMPS) based PS-InSAR and the Small Baselines Subset (SBAS) techniques to estimate the surface deformation in Tehri dam reservoir region in Uttarkhand, India. Both PS-InSAR and SBAS approaches used sixteen ENVISAT ASAR C-Band images for generating single master and multiple master interferograms stack respectively and their StaMPS processing resulted in time series 1D-Line of Sight (LOS) mean velocity maps which are indicative of deformation in terms of movement towards and away from the satellites. From 1D LOS velocity maps, localization of landslide is evident along the reservoir rim area which was also investigated in the previous studies. Both PS-InSAR and SBAS effectively extract measurement pixels in the study region, and the general results provided by both approaches show a similar deformation pattern along the Tehri reservoir region. Further, we conclude that StaMPS based PS-InSAR method performs better in terms of extracting more number of measurement pixels and in the estimation of mean Line of Sight (LOS) velocity as compared to SBAS method. It is also proposed to take up a few major landslides area in Uttarakhand for slope stability assessment.

  18. Beyond PSInSAR: the SQUEESAR Approach

    Science.gov (United States)

    Ferretti, A.; Novali, F.; Fumagalli, A.; Prati, C.; Rocca, F.; Rucci, A.

    2009-12-01

    After a decade since the first results on ERS data, Permanent Scatterer (PS) InSAR has become an operational technology for detecting and monitoring slow surface deformation phenomena such as subsidence and uplift, landslides, seismic fault creeping, volcanic inflation, etc. Processing procedures have been continuously updated, but the core of the algorithm has not been changed significantly. As well known, in PSInSAR, the main target is the identification of individual pixels that exhibit a “PS behavior”, i.e. they are only slightly affected by both temporal and geometrical decorrelation. Typically, these scatterers correspond to man-made objects, but PS have been identified also in non-urban areas, where exposed rocks or outcrops can indeed create good radar benchmarks and enable high-quality displacement measurements. Contrary to interferogram stacking techniques, PS analyses are carried out on a pixel-by-pixel basis, with no filtering of the interferograms, in order to preserve phase values from possible incoherent clutter surrounding good radar targets. In fact, any filtering process implies a spatial smoothing of the data that could compromise - rather than improve - phase coherence, at least for isolated PS. Although the PS approach usually allows one to retrieve high quality deformation measurements on a sparse grid of good radar targets, in some datasets it is quite evident how the number of pixels where some information can be extracted could be significantly increased by relaxing the hypothesis on target coherence and searching for pixels where the coherence level is high enough at least in some interferograms of the data-stack, not necessarily all. The idea of computing a “coherence matrix” for each pixel of the area of interest have been already proposed in previous papers, together with a statistical estimation of some physical parameters of interest (e.g. the average displacement rate) based on the covariance matrix. In past publications

  19. InSAR Geodesy: The Next Phase

    Science.gov (United States)

    Simons, M.

    2016-12-01

    Published in 1993, the first prominent geophysical applications of repeat pass Interferometric Synthetic Aperture Radar (InSAR) demonstrated spatially continuous imaging of the velocity of a remote ice stream in Antarctica and the ground displacement from a large earthquake in California. These studies heralded comprehensive assessments of rapid changes in the ice sheets and novel perspectives on earthquake source physics, all enabled by a new era in geodetic imaging with sub-centimeter sensitivity, meter-scale spatial resolution and expansive coverage. Since 1993, the promise of InSAR has been to provide deformation measurements "everywhere and all the time". Indeed, the new generation of satellites are already providing shorter revisit times and the gradual move to constellations of nearly identical satellites allows sub-weekly revisits at selected radar frequencies for many regions of interest. This increase in temporal sampling has prompted the geodetic community to develop a variety of InSAR time series methods and corrections techniques to mitigate the impact of path delays accrued in the atmosphere, all while inferring one or more components of the 3D time-dependent motions of Earth's solid surface. We illustrate these capabilities with recent studies that include detection of shallow aseismic slip transients on a major strike slip fault, dynamics of a subglacial eruption, the signature of aquifer management, mapping of rapid aseismic fault slip following a major earthquake and the long-distance response of ice stream motion to ocean tides. The increased sampling rate of observations allows us to improve our sensitivity to small amplitude deformation processes, separate overlapping physical processes by their different spatio-temporal signatures, and increase the general utility of imaging geodesy for rapid disaster response. At the same time, we need to rethink how data is managed for users with different capabilities - a critical challenge as we aim for a

  20. Nursing interventions and protective measures during hospitalization of a patient with Middle East Respiratory Syndrome -coV. A case report

    Directory of Open Access Journals (Sweden)

    Georgios Argyriou

    2015-04-01

    Full Text Available Middle East Respiratory Syndrome (MERS is a respiratory disease caused by a novel coronavirus (MERS-CoV that was first identified in Saudi Arabia in 2012. On the April 18nth 2014, a laboratory- confirmed case of MERS-CoV infection was reported in Athens, Greece in a patient returning from Jeddah, Saudi Arabia. Within two days the patient was transferred to Intensive Care Unit (ICU in the Chest Infection hospital of Athens. In this article we report the procedure followed the period since patient’s hospitalization in a negative pressure room until his transfer to general ICU where his laboratory results were twice negative for MERS-CoV.

  1. The Danish polarimetric SAR for remote sensing applications

    DEFF Research Database (Denmark)

    Christensen, Erik Lintz; Madsen, Søren Nørvang; Dall, Jørgen

    1994-01-01

    Presents the Danish polarimetric SAR system, EMISAR, and the approach taken in the system design to achieve a reliable high performance system. The design and implementation of the antenna system as well as the analog and digital hardware are discussed. The SAR utilises a dual polarised microstri...

  2. SAR11 bacteria linked to ocean anoxia and nitrogen loss

    DEFF Research Database (Denmark)

    Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel

    2016-01-01

    . Anaerobic metabolism has not yet been observed in SAR11, and it remains unknown how these bacteria contribute to OMZ biogeochemical cycling. Here, genomic analysis of single cells from the world’s largest OMZ revealed previously uncharacterized SAR11 lineages with adaptations for life without oxygen...

  3. Genome organization of the SARS-CoV

    DEFF Research Database (Denmark)

    Xu, Jing; Hu, Jianfei; Wang, Jing;

    2003-01-01

    Annotation of the genome sequence of the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) is indispensable to understand its evolution and pathogenesis. We have performed a full annotation of the SARS-CoV genome sequences by using annotation programs publicly available or devel...

  4. Speckle filtering in satellite SAR change detection imagery

    NARCIS (Netherlands)

    Dekker, R.J.

    1998-01-01

    Repeat-pass Synthetic Aperture Radar (SAR) imagery is useful for change detection. A disadvantage of SAR is the system-inherent speckle noise. This can be reduced by filtering. Various filter types and methods are described in the literature, but not one fits the speckle noise in change detection

  5. Signal Processing for High Resolution FMCW SAR and Moving Target

    NARCIS (Netherlands)

    Meta, A.; Hoogeboom, P.

    2005-01-01

    The combination of Frequency Modulated ContinuousWave (FMCW) technology and Synthetic Aperture Radar (SAR) leads to lightweight, cost-effective imaging sensors of high resolution. In FMCW SAR applications the conventional stop-and-go approximation used in pulse radar algorithms cannot be considered

  6. The ONERA Airborne Multi Frequency SAR Imaging Systems (PREPRINT)

    Science.gov (United States)

    2014-10-09

    The ONERA Airborne Multi-Frequency SAR Imaging Systems Olivier Ruault du Plessis Electromagnetism and Radar Department ONERA Salon de...Provence FRANCE Olivier.Ruault_du_Plessis@onera.fr Philippe Dreuillet Electromagnetism and Radar Department ONERA Palaiseau FRANCE...Philippe.Dreuillet@onera.fr Abstract—RAMSES-NG and SETHI, the airborne SAR systems developed by ONERA , integrate new generation of radar and optronics

  7. SARS treatment: experience from a team in Guangdong, China

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    @@ The epidemic of SARS in Guangdong province of China is beginning to be restrained. In May 2003, Dr. Zhong Nanshan, head of the Guangzhou Institute of Respiratory Disease, presented at a training course in Beijing for medical personnel. Some important issues have been addressed based on the experience concluded during their combating with SARS in Guangdong.

  8. Impact of SARS on China's economy limited

    Institute of Scientific and Technical Information of China (English)

    TaoRunyuan

    2003-01-01

    China's economic upsurge cannot be reversed by the severe acute respiratory syndrome (SARS) now ravaging some parts of the country. China's economy will maintain its steady growth momentum despite the SARS' impact to some extent on investment, consumption andexport, according to a number of noted Chinese experts.

  9. An Adaptive Ship Detection Scheme for Spaceborne SAR Imagery

    Directory of Open Access Journals (Sweden)

    Xiangguang Leng

    2016-08-01

    Full Text Available With the rapid development of spaceborne synthetic aperture radar (SAR and the increasing need of ship detection, research on adaptive ship detection in spaceborne SAR imagery is of great importance. Focusing on practical problems of ship detection, this paper presents a highly adaptive ship detection scheme for spaceborne SAR imagery. It is able to process a wide range of sensors, imaging modes and resolutions. Two main stages are identified in this paper, namely: ship candidate detection and ship discrimination. Firstly, this paper proposes an adaptive land masking method using ship size and pixel size. Secondly, taking into account the imaging mode, incidence angle, and polarization channel of SAR imagery, it implements adaptive ship candidate detection in spaceborne SAR imagery by applying different strategies to different resolution SAR images. Finally, aiming at different types of typical false alarms, this paper proposes a comprehensive ship discrimination method in spaceborne SAR imagery based on confidence level and complexity analysis. Experimental results based on RADARSAT-1, RADARSAT-2, TerraSAR-X, RS-1, and RS-3 images demonstrate that the adaptive scheme proposed in this paper is able to detect ship targets in a fast, efficient and robust way.

  10. Polarimetric SAR interferometry applied to land ice: modeling

    DEFF Research Database (Denmark)

    Dall, Jørgen; Papathanassiou, Konstantinos; Skriver, Henning

    2004-01-01

    This paper introduces a few simple scattering models intended for the application of polarimetric SAR interfer-ometry to land ice. The principal aim is to eliminate the penetration bias hampering ice sheet elevation maps generated with single-channel SAR interferometry. The polarimetric coherent...

  11. Classification of Targets in SAR Images Using ISAR Data

    NARCIS (Netherlands)

    Wit, J.J.M. de; Dekker, R.J.; Broek, A.C. van den

    2005-01-01

    Feature-based classification of targets in SAR images by using ISAR measurements was studied, based on polarimetric SAR and ISAR data acquired with the MEMPHIS radar system of FGAN-FHR. The data contained one T-72 battle tank, one BMP combat vehicle, and several confusers. The resolution was 75 cm.

  12. Comparing satellite SAR and wind farm wake models

    DEFF Research Database (Denmark)

    Hasager, Charlotte Bay; Vincent, P.; Husson, R.

    2015-01-01

    The aim of the paper is to present offshore wind farm wake observed from satellite Synthetic Aperture Radar (SAR) wind fields from RADARSAT-1/-2 and Envisat and to compare these wakes qualitatively to wind farm wake model results. From some satellite SAR wind maps very long wakes are observed. Th...

  13. (Q)SAR: A Tool for the Toxicologist.

    Science.gov (United States)

    Steinbach, Thomas; Gad-McDonald, Samantha; Kruhlak, Naomi; Powley, Mark; Greene, Nigel

    2015-01-01

    A continuing education (CE) course at the 2014 American College of Toxicology annual meeting covered the topic of (Quantitative) Structure-Activity Relationships [(Q)SAR]. The (Q)SAR methodologies use predictive computer modeling based on predefined rules to describe the relationship between chemical structure and a chemical's associated biological activity or statistical tools to find correlations between biologic activity and the molecular structure or properties of a compound. The (Q)SAR has applications in risk assessment, drug discovery, and regulatory decision making. Pressure within industry to reduce the cost of drug development and societal pressure for government regulatory agencies to produce more accurate and timely risk assessment of drugs and chemicals have necessitated the use of (Q)SAR. Producing a high-quality (Q)SAR model depends on many factors including the choice of statistical methods and descriptors, but first and foremost the quality of the data input into the model. Understanding how a (Q)SAR model is developed and applied is critical to the successful use of such a tool. The CE session covered the basic principles of (Q)SAR, practical applications of these computational models in toxicology, how regulatory agencies use and interpret (Q)SAR models, and potential pitfalls of using them.

  14. Crop Classification Using Short-Revisit Multitemporal SAR Data

    DEFF Research Database (Denmark)

    Skriver, Henning; Mattia, Francesco; Satalino, Giuseppe;

    2011-01-01

    Classification of crops and other land cover types is an important application of both optical/infrared and SAR satellite data. It is already an import application of present satellite systems, as it will be for planned missions, such as the Sentinels. An airborne SAR data set with a short revisi...

  15. Investigation of Polarimetric SAR Data Acquired at Multiple Incidence Angles

    DEFF Research Database (Denmark)

    Svendsen, Morten Thougaard; Skriver, Henning; Thomsen, A.

    1998-01-01

    The dependence of different polarimetric parameters on the incidence angles in the range of 30° to 60° is investigated for a number of different crops using airborne SAR data. The purpose of the investigation is to determine the effect of the variation of incidence angle within a SAR image when...

  16. Ocean Surface Wind Speed of Hurricane Helene Observed by SAR

    DEFF Research Database (Denmark)

    Xu, Qing; Cheng, Yongcun; Li, Xiaofeng

    2011-01-01

    The hurricanes can be detected by many remote sensors, but synthetic aperture radar (SAR) can yield high-resolution (sub-kilometer) and low-level wind information that cannot be seen below the cloud by other sensors. In this paper, an assessment of SAR capability of monitoring high-resolution hur......The hurricanes can be detected by many remote sensors, but synthetic aperture radar (SAR) can yield high-resolution (sub-kilometer) and low-level wind information that cannot be seen below the cloud by other sensors. In this paper, an assessment of SAR capability of monitoring high......-resolution hurricane was conducted. A case study was carried out to retrieve ocean surface wind field from C-band RADARSAT-1 SAR image which captured the structure of hurricane Helene over the Atlantic Ocean on 20 September, 2006. With wind direction from the outputs of U.S. Navy Operational Global Atmospheric...... CIWRAP models have been tested to extract wind speed from SAR data. The SAR retrieved ocean surface winds were compared to the aircraft wind speed observations from stepped frequency microwave radiometer (SFMR). The results show the capability of hurricane wind monitoring by SAR....

  17. Cloaked similarity between HIV-1 and SARS-CoV suggests an anti-SARS strategy

    Directory of Open Access Journals (Sweden)

    Kliger Yossef

    2003-09-01

    Full Text Available Abstract Background Severe acute respiratory syndrome (SARS is a febrile respiratory illness. The disease has been etiologically linked to a novel coronavirus that has been named the SARS-associated coronavirus (SARS-CoV, whose genome was recently sequenced. Since it is a member of the Coronaviridae, its spike protein (S2 is believed to play a central role in viral entry by facilitating fusion between the viral and host cell membranes. The protein responsible for viral-induced membrane fusion of HIV-1 (gp41 differs in length, and has no sequence homology with S2. Results Sequence analysis reveals that the two viral proteins share the sequence motifs that construct their active conformation. These include (1 an N-terminal leucine/isoleucine zipper-like sequence, and (2 a C-terminal heptad repeat located upstream of (3 an aromatic residue-rich region juxtaposed to the (4 transmembrane segment. Conclusions This study points to a similar mode of action for the two viral proteins, suggesting that anti-viral strategy that targets the viral-induced membrane fusion step can be adopted from HIV-1 to SARS-CoV. Recently the FDA approved Enfuvirtide, a synthetic peptide corresponding to the C-terminal heptad repeat of HIV-1 gp41, as an anti-AIDS agent. Enfuvirtide and C34, another anti HIV-1 peptide, exert their inhibitory activity by binding to a leucine/isoleucine zipper-like sequence in gp41, thus inhibiting a conformational change of gp41 required for its activation. We suggest that peptides corresponding to the C-terminal heptad repeat of the S2 protein may serve as inhibitors for SARS-CoV entry.

  18. sar Aira y el exotismo

    Directory of Open Access Journals (Sweden)

    Ricardo Gutiérrez-Mouat

    2013-07-01

    Full Text Available The present paper analyses one of the less commonly studied aspects of the poetics of César Aira: exoticism, which in Aira stems from the unstable and paradoxical place proper of a post-modern writer from the Rio de la Plata facing traditional (and European representations of exoticism in a period of cultural globalisation. The paper examines such a paradox and concludes that Aira’s exoticism is manifest in the ethnographic simulation and in certain thoughts on the de-familiarisation of the mother tongue.

  19. Two dimensional estimates from ocean SAR images

    Directory of Open Access Journals (Sweden)

    J. M. Le Caillec

    1996-01-01

    Full Text Available Synthetic Aperture Radar (SAR images of the ocean yield a lot of information on the sea-state surface providing that the mapping process between the surface and the image is clearly defined. However it is well known that SAR images exhibit non-gaussian statistics and that the motion of the scatterers on the surface, while the image is being formed, may yield to nonlinearities. The detection and quantification of these nonlinearities are made possible by using Higher Order Spectra (HOS methods and more specifically, bispectrum estimation. The development of the latter method allowed us to find phase relations between different parts of the image and to recognise their level of coupling, i.e. if and how waves of different wavelengths interacted nonlinearly. This information is quite important as the usual models assume strong nonlinearities when the waves are propagating in the azimuthal direction (i.e. along the satellite track and almost no nonlinearities when propagating in the range direction. In this paper, the mapping of the ocean surface to the SAR image is reinterpreted and a specific model (i.e. a Second Order Volterra Model is introduced. The nonlinearities are thus explained as either produced by a nonlinear system or due to waves propagating into selected directions (azimuth or range and interacting during image formation. It is shown that quadratic nonlinearities occur for waves propagating near the range direction while for those travelling in the azimuthal direction the nonlinearities, when present, are mostly due to wave interactions but are almost completely removed by the filtering effect coming from the surface motion itself (azimuth cut-off. An inherent quadratic interaction filtering (azimuth high pass filter is also present. But some other effects, apparently nonlinear, are not detected with the methods described here, meaning that either the usual relation developed for the Ocean-to-SAR transform is somewhat incomplete

  20. Unparallel trajectory bistatic spotlight SAR imaging

    Institute of Scientific and Technical Information of China (English)

    ZHANG Lei; JING Wei; XING MengDao; BAO Zheng

    2009-01-01

    A new approach for unparallel trajectory bistatic spotlight SAR imaging is proposed. The approach utilizes the concept of instantaneous Doppler wavenumber and introduces two variants, the sum-range and subtraction-range, to develop the 2D frequency analytical formula. Based on the assumption of plane wavefront, the transmitting and receiving Doppler are separated and formulated via series reversion. And frequency scaling is applied to focus image. The algorithm is with high computational efficiency, and provides well focus for limited scene imaging. Simulation result confirms the validity of the approach.

  1. Permanent scatterer InSAR processing: Forsmark

    Energy Technology Data Exchange (ETDEWEB)

    Dehls, John F. [Geological Survey of Norway, Trondheim (Norway)

    2006-04-15

    It has been speculated that slow, aseismic movement may be occurring along some of the fracture zones crosscutting the Forsmark area. The purpose of this study is to determine if it is possible to measure such movement using dInSAR. Differential SAR Interferometry (DInSAR) is a technique that compares the phases of multiple radar images of an area to measure surface change. The method has the potential to detect millimetric surface deformation along the sensor - target line-of-sight. Differences in phase between two images are easily viewed by combining, or interfering, the two phase-images. In the resulting image, the waves will either reinforce or cancel one another, depending upon the relative phases. The resulting image is called an interferogram and contains concentric bands of colour, or fringes, that are related to topography and/or surface deformation. New algorithms use many images acquired over a long time period to determine the movement history of individual objects, referred to as permanent scatterers. In the current project, standard PSInSAR processing was performed on 40 ERS-1 and ERS-2 scenes. The total area processed is approximately 1,500 km{sup 2}. Slightly less than 20,000 permanent scatterers were identified.The highest densities were obtained along the coast and on the islands, where natural outcrops are more abundant. Two main classes of objects act as permanent scatterers in this area. The first are natural reflectors, such as rocks. The second are man-made reflectors, such as parts of buildings. Numerous local movements were found in the study area, relating to building subsidence, or compaction of anthropogenic fill. The dataset was divided into three groups for analysis, based upon the location of regional lineaments provided by SKB. Both statistical and geostatistical techniques were used. The median velocity of the three blocks did not differ by more than 0.2 mm/yr. This is not considered significant, given the possible magnitude of

  2. Cross-calibration of interferometric SAR data

    DEFF Research Database (Denmark)

    Dall, Jørgen

    2003-01-01

    Generation of digital elevation models from interferometric synthetic aperture radar (SAR) data is a well established technique. Achieving a high geometric fidelity calls for a calibration accounting for inaccurate navigation data and system parameters as well as system imperfections. Fully......, but not necessarily from map to map. It is based on natural distributed targets for which no a priori knowledge is needed. In particular, no DEM is required as in calibration techniques based on dedicated calibration scenes. To achieve absolute calibration, i.e. elimination of a constant elevation offset, a single...

  3. The Accuratre Signal Model and Imaging Processing in Geosynchronous SAR

    Science.gov (United States)

    Hu, Cheng

    With the development of synthetic aperture radar (SAR) application, the disadvantage of low earth orbit (LEO) SAR becomes more and more apparent. The increase of orbit altitude can shorten the revisit time and enlarge the coverage area in single look, and then satisfy the application requirement. The concept of geosynchronous earth orbit (GEO) SAR system is firstly presented and deeply discussed by K.Tomiyasi and other researchers. A GEO SAR, with its fine temporal resolution, would overcome the limitations of current imaging systems, allowing dense interpretation of transient phenomena as GPS time-series analysis with a spatial density several orders of magnitude finer. Until now, the related literatures about GEO SAR are mainly focused in the system parameter design and application requirement. As for the signal characteristic, resolution calculation and imaging algorithms, it is nearly blank in the related literatures of GEO SAR. In the LEO SAR, the signal model analysis adopts the `Stop-and-Go' assumption in general, and this assumption can satisfy the imaging requirement in present advanced SAR system, such as TerraSAR, Radarsat2 and so on. However because of long propagation distance and non-negligible earth rotation, the `Stop-and-Go' assumption does not exist and will cause large propagation distance error, and then affect the image formation. Furthermore the long propagation distance will result in the long synthetic aperture time such as hundreds of seconds, therefore the linear trajectory model in LEO SAR imaging will fail in GEO imaging, and the new imaging model needs to be proposed for the GEO SAR imaging processing. In this paper, considering the relative motion between satellite and earth during signal propagation time, the accurate analysis method for propagation slant range is firstly presented. Furthermore, the difference between accurate analysis method and `Stop-and-Go' assumption is analytically obtained. Meanwhile based on the derived

  4. The efficacy of Chinese medicine for SARS: a review of Chinese publications after the crisis.

    Science.gov (United States)

    Leung, Ping-Chung

    2007-01-01

    During the SARS crisis in China, 40-60% infected patients, at some stages of their treatment, received Chinese medicine treatment on top of the standard modern medicine treatment. This practice was endorsed and encouraged by the Chinese Center for Disease Control and Prevention, and some details of the herbal treatment were recommended. A review of the publications during and after the SARS crisis enabled us to get an objective view of the true value of the adjuvant therapy using Chinese medicinal herbs. Of the 130 articles searched, 90 were of reasonable quality and contained sufficient information for the enlightenment of the situation. These were reviewed. The results revealed positive but inconclusive indications about the efficacy of the combined treatments using Chinese medicine as an adjuvant. Positive effects using adjuvant herbal therapy included better control of fever, quicker clearance of chest infection, lesser consumption of steroids and other symptoms relief. In a few reports, some evidences of immunological boosterings were also found. More caution is required on the allegation about the efficacy of herbal medicine for the treatment or prevention of viral infection affecting the respiratory tract, while more clinical studies are indicated.

  5. Radiometric and geometric calibration of JERS-1 SAR

    Science.gov (United States)

    Shimada, M.

    Since the beginning of April '92, the calibration and validation has been being conducted to characterize the JERS-1's SAR and qualify the SAR image products using the calibration instruments and evaluation software tools, such as the 2.4 meter trihedral corner reflectors and the active radar calibrators whose radar cross sections are known as well as their locations. Analysis of SAR data using such instruments derived the conversion factor (CF), which relates the digital number (DN) of SAR image pixel and the normalized radar cross section (NRCS) of the target, as -68.51 dB with the accuracy of 1.86 dB(1 sigma) for the full swath of SAR image. The image quality was also recognized as well as designed.

  6. Ionospheric effects on repeat-pass SAR interferometry

    Science.gov (United States)

    Feng, Jian; Zhen, Weimin; Wu, Zhensen

    2017-10-01

    InSAR measurements can be significantly affected by the atmosphere when the radar signal propagates through the atmosphere since it varies with space and time. Great efforts have been made in recent years to better understand the properties of the tropospheric effects and to develop methods for mitigating these effects. By using the basic principles of InSAR, the quantitative analysis of ionospheric delay effects on topography and surface deformation have been introduced for the first time. The measurement errors can be related to the vertical ionospheric total electron content (vTEC). By using the ionospheric observations, the effects of temporal ionospheric variations on InSAR have been analyzed. The results indicate that the ionospheric variations with time, season, solar cycle and geomagnetic activities can compromise the effectiveness of InSAR for both the measurement of topography and surface determination. The repeat-pass SAR interferometry errors induced by ionosphere should be corrected by actual measurements.

  7. Flood Mapping Using InSAR Coherence Map

    Science.gov (United States)

    Selmi, S.; Ben Abdallah, W.; Abdelfatteh, R.

    2014-09-01

    Classic approaches for the detection of flooded areas are based on a static analysis of optical images and/or SAR data during and after the event. In this paper, we aim to extract the flooded zones by using the SAR image coupled with the InSAR coherence. A new formulation of the ratio approach for flood detection is given considering InSAR coherence. Our contribution is to take advantage from the coherence map provided using the InSAR pairs (one before and one after the event) to enhance the detection of flooded areas. We explore the fact that the coherence values during and after the flood are mainly differents on the flooded zones and we give a more suitable flood decision rule using this assumption. The proposed approach is tested and validated in the case of the flood taken place in 2005 in the region of Kef in Tunisia.

  8. SAR Image Desp eckling by Sparse Reconstruction Based on Shearlets

    Institute of Scientific and Technical Information of China (English)

    JI Jian; LI Xiao; XU Shuang-Xing; LIU Huan; HUANG Jing-Jing

    2015-01-01

    Synthetic aperture radar (SAR) image is usually polluted by multiplicative speckle noise, which can affect further processing of SAR image. This paper presents a new approach for multiplicative noise removal in SAR images based on sparse coding by shearlets filtering. First, a SAR despeckling model is built by the theory of compressed sensing (CS). Secondly, obtain shearlets coefficient through shearlet transform, each scale coefficient is represented as a unit. For each unit, sparse coefficient is iteratively estimated by using Bayesian estimation based on shearlets domain. The represented units are finally collaboratively aggregated to construct the despeckling image. Our results in SAR image despeckling show the good performance of this algorithm, and prove that the algorithm proposed is robustness to noise, which is not only good for reducing speckle, but also has an advantage in holding information of the edge.

  9. Identification of an epitope of SARS-coronavirus nucleocapsid protein

    Institute of Scientific and Technical Information of China (English)

    YING LIN; JIN WANG; HONG XIA WANG; HUA LIANG JIANG; JIAN HUA SHEN; YOU HUA XIE; YUAN WANG; GANG PEI; BEI FEN SHEN; JIA RUI WU; BING SUN; XU SHEN; RUI FU YANG; YI XUE LI; YONG YONG JI; YOU YU HE; MUDE SHI; WEI LU; TIE LIU SHI

    2003-01-01

    The nucleocapsid (N) protein of severe acute respiratory syndrome-coronavirus (SARS-CoV) is a majorvirion structural protein. In this study, two epitopes (N1 and N2) of the N protein of SARS-CoV werepredicted by bioinformatics analysis. After immunization with two peptides, the peptides-specific antibodieswere isolated from the immunized rabbits. The further experiments demonstrated that N1 peptide-inducedpolyclonal antibodies had a high affinity to bind to E. coli expressed N protein of SARS-CoV. Furthermore, itwas confirmed that N1 peptide-specific IgG antibodies were detectable in the sera of severe acute respiratorysyndrome (SARS) patients. The results indicated that an epitope of the N protein has been identified andN protein specific Abs were produced by peptide immunization, which will be useful for the study of SARS-CoV.

  10. INVENTORY OF IRRIGATED RICE ECOSYSTEM USING POLARIMETRIC SAR DATA

    Directory of Open Access Journals (Sweden)

    P. Srikanth

    2012-08-01

    Full Text Available An attempt has been made in the current study to assess the potential of polarimetric SAR data for inventory of kharif rice and the major competing crop like cotton. In the process, physical process of the scattering mechanisms occurring in rice and cotton crops at different phonological stages was studied through the use of temporal Radarsat 2 Fine quadpol SAR data. The temporal dynamics of the volume, double and odd bounce, entropy, anisotropy, alpha parameters and polarimertic signatures, classification through isodata clustering and Wishart techniques were assessed. The Wishart (H-a classification showed higher overall as well as rice and cotton crop accuracies compared to the isodata clustering from Freeman 3-component decomposition. The classification of temporal SAR data sets independently showed that the rice crop forecasting can be advanced with the use of appropriate single date polarimetric SAR data rather than using temporal SAR amplitude data sets with the single polarization in irrigated rice ecosystems

  11. Ice flow mapping with P-band SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Nielsen, Ulrik; Kusk, Anders

    2013-01-01

    -band SAR data have been acquired in Greenland, and both offset tracking and DInSAR have been applied to the full resolution data as well as to data degraded to the resolution of Biomass. Generally, ice velocity maps are successfully generated, but in the ablation zone, DInSAR fails in the melt season......Glacier and ice sheet dynamics are currently mapped with X-, C-, and L-band SAR. With the prospect of a P-band SAR, Biomass, to be launched within the next decade it is interesting to look into the potential of P-band for ice velocity mapping. In this paper first results are presented. Airborne P...

  12. Protective Role of Toll-like Receptor 3-Induced Type I Interferon in Murine Coronavirus Infection of Macrophages

    Directory of Open Access Journals (Sweden)

    Sonia Navas-Martin

    2012-05-01

    Full Text Available Toll-like Receptors (TLRs sense viral infections and induce production of type I interferons (IFNs, other cytokines, and chemokines. Viral recognition by TLRs and other pattern recognition receptors (PRRs has been proven to be cell-type specific. Triggering of TLRs with selected ligands can be beneficial against some viral infections. Macrophages are antigen-presenting cells that express TLRs and have a key role in the innate and adaptive immunity against viruses. Coronaviruses (CoVs are single-stranded, positive-sense RNA viruses that cause acute and chronic infections and can productively infect macrophages. Investigation of the interplay between CoVs and PRRs is in its infancy. We assessed the effect of triggering TLR2, TLR3, TLR4, and TLR7 with selected ligands on the susceptibility of the J774A.1 macrophage cell line to infection with murine coronavirus (mouse hepatitis virus, [MHV]. Stimulation of TLR2, TLR4, or TLR7 did not affect MHV production. In contrast, pre-stimulation of TLR3 with polyinosinic-polycytidylic acid (poly I:C hindered MHV infection through induction of IFN-β in macrophages. We demonstrate that activation of TLR3 with the synthetic ligand poly I:C mediates antiviral immunity that diminishes (MHV-A59 or suppresses (MHV-JHM, MHV-3 virus production in macrophages.

  13. Cryo-electron microscopy structures of the SARS-CoV spike glycoprotein reveal a prerequisite conformational state for receptor binding.

    Science.gov (United States)

    Gui, Miao; Song, Wenfei; Zhou, Haixia; Xu, Jingwei; Chen, Silian; Xiang, Ye; Wang, Xinquan

    2017-01-01

    The global outbreak of SARS in 2002-2003 was caused by the infection of a new human coronavirus SARS-CoV. The infection of SARS-CoV is mediated mainly through the viral surface glycoproteins, which consist of S1 and S2 subunits and form trimer spikes on the envelope of the virions. Here we report the ectodomain structures of the SARS-CoV surface spike trimer in different conformational states determined by single-particle cryo-electron microscopy. The conformation 1 determined at 4.3 Å resolution is three-fold symmetric and has all the three receptor-binding C-terminal domain 1 (CTD1s) of the S1 subunits in "down" positions. The binding of the "down" CTD1s to the SARS-CoV receptor ACE2 is not possible due to steric clashes, suggesting that the conformation 1 represents a receptor-binding inactive state. Conformations 2-4 determined at 7.3, 5.7 and 6.8 Å resolutions are all asymmetric, in which one RBD rotates away from the "down" position by different angles to an "up" position. The "up" CTD1 exposes the receptor-binding site for ACE2 engagement, suggesting that the conformations 2-4 represent a receptor-binding active state. This conformational change is also required for the binding of SARS-CoV neutralizing antibodies targeting the CTD1. This phenomenon could be extended to other betacoronaviruses utilizing CTD1 of the S1 subunit for receptor binding, which provides new insights into the intermediate states of coronavirus pre-fusion spike trimer during infection.

  14. Comparison and Analysis of Geometric Correction Models of Spaceborne SAR.

    Science.gov (United States)

    Jiang, Weihao; Yu, Anxi; Dong, Zhen; Wang, Qingsong

    2016-06-25

    Following the development of synthetic aperture radar (SAR), SAR images have become increasingly common. Many researchers have conducted large studies on geolocation models, but little work has been conducted on the available models for the geometric correction of SAR images of different terrain. To address the terrain issue, four different models were compared and are described in this paper: a rigorous range-doppler (RD) model, a rational polynomial coefficients (RPC) model, a revised polynomial (PM) model and an elevation derivation (EDM) model. The results of comparisons of the geolocation capabilities of the models show that a proper model for a SAR image of a specific terrain can be determined. A solution table was obtained to recommend a suitable model for users. Three TerraSAR-X images, two ALOS-PALSAR images and one Envisat-ASAR image were used for the experiment, including flat terrain and mountain terrain SAR images as well as two large area images. Geolocation accuracies of the models for different terrain SAR images were computed and analyzed. The comparisons of the models show that the RD model was accurate but was the least efficient; therefore, it is not the ideal model for real-time implementations. The RPC model is sufficiently accurate and efficient for the geometric correction of SAR images of flat terrain, whose precision is below 0.001 pixels. The EDM model is suitable for the geolocation of SAR images of mountainous terrain, and its precision can reach 0.007 pixels. Although the PM model does not produce results as precise as the other models, its efficiency is excellent and its potential should not be underestimated. With respect to the geometric correction of SAR images over large areas, the EDM model has higher accuracy under one pixel, whereas the RPC model consumes one third of the time of the EDM model.

  15. Comparison and Analysis of Geometric Correction Models of Spaceborne SAR

    Directory of Open Access Journals (Sweden)

    Weihao Jiang

    2016-06-01

    Full Text Available Following the development of synthetic aperture radar (SAR, SAR images have become increasingly common. Many researchers have conducted large studies on geolocation models, but little work has been conducted on the available models for the geometric correction of SAR images of different terrain. To address the terrain issue, four different models were compared and are described in this paper: a rigorous range-doppler (RD model, a rational polynomial coefficients (RPC model, a revised polynomial (PM model and an elevation derivation (EDM model. The results of comparisons of the geolocation capabilities of the models show that a proper model for a SAR image of a specific terrain can be determined. A solution table was obtained to recommend a suitable model for users. Three TerraSAR-X images, two ALOS-PALSAR images and one Envisat-ASAR image were used for the experiment, including flat terrain and mountain terrain SAR images as well as two large area images. Geolocation accuracies of the models for different terrain SAR images were computed and analyzed. The comparisons of the models show that the RD model was accurate but was the least efficient; therefore, it is not the ideal model for real-time implementations. The RPC model is sufficiently accurate and efficient for the geometric correction of SAR images of flat terrain, whose precision is below 0.001 pixels. The EDM model is suitable for the geolocation of SAR images of mountainous terrain, and its precision can reach 0.007 pixels. Although the PM model does not produce results as precise as the other models, its efficiency is excellent and its potential should not be underestimated. With respect to the geometric correction of SAR images over large areas, the EDM model has higher accuracy under one pixel, whereas the RPC model consumes one third of the time of the EDM model.

  16. Real-time optical processor prototype for remote SAR applications

    Science.gov (United States)

    Marchese, Linda; Doucet, Michel; Harnisch, Bernd; Suess, Martin; Bourqui, Pascal; Legros, Mathieu; Desnoyers, Nichola; Guillot, Ludovic; Mercier, Luc; Savard, Maxime; Martel, Anne; Châteauneuf, François; Bergeron, Alain

    2009-09-01

    A Compact Real-Time Optical SAR Processor has been successfully developed and tested. SAR, or Synthetic Aperture Radar, is a powerful tool providing enhanced day and night imaging capabilities. SAR systems typically generate large amounts of information generally in the form of complex data that are difficult to compress. Specifically, for planetary missions and unmanned aerial vehicle (UAV) systems with limited communication data rates this is a clear disadvantage. SAR images are typically processed electronically applying dedicated Fourier transformations. This, however, can also be performed optically in real-time. Indeed, the first SAR images have been optically processed. The optical processor architecture provides inherent parallel computing capabilities that can be used advantageously for the SAR data processing. Onboard SAR image generation would provide local access to processed information paving the way for real-time decision-making. This could eventually benefit navigation strategy and instrument orientation decisions. Moreover, for interplanetary missions, onboard analysis of images could provide important feature identification clues and could help select the appropriate images to be transmitted to Earth, consequently helping bandwidth management. This could ultimately reduce the data throughput requirements and related transmission bandwidth. This paper reviews the design of a compact optical SAR processor prototype that would reduce power, weight, and size requirements and reviews the analysis of SAR image generation using the table-top optical processor. Various SAR processor parameters such as processing capabilities, image quality (point target analysis), weight and size are reviewed. Results of image generation from simulated point targets as well as real satellite-acquired raw data are presented.

  17. Relations of SARS-Related Stressors and Coping to Chinese College Students' Psychological Adjustment during the 2003 Beijing SARS Epidemic

    Science.gov (United States)

    Main, Alexandra; Zhou, Qing; Ma, Yue; Luecken, Linda J.; Liu, Xin

    2011-01-01

    This study examined the main and interactive relations of stressors and coping related to severe acute respiratory syndrome (SARS) with Chinese college students' psychological adjustment (psychological symptoms, perceived general health, and life satisfaction) during the 2003 Beijing SARS epidemic. All the constructs were assessed by self-report…

  18. Rapid inactivation of SARS-like coronaviruses.

    Energy Technology Data Exchange (ETDEWEB)

    Kapil, Sanjay (Kansas State University, Manhattan, KS); Oberst, R. D. (Kansas State University, Manhattan, KS); Bieker, Jill Marie; Tucker, Mark David; Souza, Caroline Ann; Williams, Cecelia Victoria

    2004-03-01

    Chemical disinfection and inactivation of viruses is largely understudied, but is very important especially in the case of highly infectious viruses. The purpose of this LDRD was to determine the efficacy of the Sandia National Laboratories developed decontamination formulations against Bovine Coronavirus (BCV) as a surrogate for the coronavirus that causes Severe Acute Respiratory Syndrome (SARS) in humans. The outbreak of SARS in late 2002 resulted from a highly infectious virus that was able to survive and remain infectious for extended periods. For this study, preliminary testing with Escherichia coli MS-2 (MS-2) and Escherichia coli T4 (T4) bacteriophages was conducted to develop virucidal methodology for verifying the inactivation after treatment with the test formulations following AOAC germicidal methodologies. After the determination of various experimental parameters (i.e. exposure, concentration) of the formulations, final testing was conducted on BCV. All experiments were conducted with various organic challenges (horse serum, bovine feces, compost) for results that more accurately represent field use condition. The MS-2 and T4 were slightly more resistant than BCV and required a 2 minute exposure while BCV was completely inactivated after a 1 minute exposure. These results were also consistent for the testing conducted in the presence of the various organic challenges indicating that the test formulations are highly effective for real world application.

  19. The Ecosystems SAR (EcoSAR) an Airborne P-band Polarimetric InSAR for the Measurement of Vegetation Structure, Biomass and Permafrost

    Science.gov (United States)

    Rincon, Rafael F.; Fatoyinbo, Temilola; Ranson, K. Jon; Osmanoglu, Batuhan; Sun, Guoqing; Deshpande, Manohar D.; Perrine, Martin L.; Du Toit, Cornelis F.; Bonds, Quenton; Beck, Jaclyn; hide

    2014-01-01

    EcoSAR is a new synthetic aperture radar (SAR) instrument being developed at the NASA/ Goddard Space Flight Center (GSFC) for the polarimetric and interferometric measurements of ecosystem structure and biomass. The instrument uses a phased-array beamforming architecture and supports full polarimetric measurements and single pass interferometry. This Instrument development is part of NASA's Earth Science Technology Office Instrument Incubator Program (ESTO IIP).

  20. Spacial Variation in SAR Images of Different Resolution for Agricultural Fields

    DEFF Research Database (Denmark)

    Sandholt, Inge; Skriver, Henning

    1999-01-01

    The spatial variation in two types of Synthetic Aperture Radar (SAR) images covering agricultural fields is analysed. C-band polarimetric SAR data from the Danish airborne SAR, EMISAR, have been compared to space based ERS-1 C-band SAR with respect to scale and effect of polarization. The general...

  1. Efficient and Quick Inactivation of SARS Coronavirus and Other Microbes Exposed to the Surfaces of Some Metal Catalysts

    Institute of Scientific and Technical Information of China (English)

    JUN HAN; LAN CHEN; SHU-MIN DUAN; QING-XIANG YANG; MIN YANG; CHEN GAO; BAO-YUN ZHANG; HONG HE; XIAO-PING DONG

    2005-01-01

    Objective To study the two metal catalysts Ag/Al2O3 and Cu/Al2O3 that interdict the transmission pathway for SARS and other respiratory infectious diseases. Methods Two metal catalysts Ag/Al2O3 and Cu/Al2O3 were pressed into wafers. One hundred μL 106 TCID50/mL SARS-CoV, 100 μL 106 PFU/mL recombinant baculovirus expressing hamster's prion protein (haPrP) protein and roughly 106 E. coli were slowly dropped onto the surfaces of the catalyst wafers and exposed for 5 and 20 min, respectively. After eluted from the surfaces of wafers, the infectivity of viruses and propagation of bacteria were measured. The expression of PrP protein was determined by Western blot. The morphological changes of bacteria were observed by electronic microscopy. Results After exposure to the catalysts surfaces for 5 and 20 min, the infectivity of SARS-CoV in Vero cells and baculovirus in Sf9 cells dropped down to a very low and undetectable level, and no colony was detected using bacteria culture method. The expression of haPrP protein reduced to 21.8% in the preparation of Sf9 cells infected with recombinant baculovirus exposed for 5 min and was undetectable exposed for 20 min. Bacterial membranes seemed to be cracked and the cytoplasm seemed to be effluent from cell bodies. Conclusion Exposures to the surfaces of Ag/Al2O3 and Cu/Al2O3 destroy the replication and propagation abilities of SARS-CoV, baculovirus and E. coli. Inactivation ability of metal catalysts needs to interact with air, utilizing oxygen molecules in air. Efficiently killing viruses and bacteria on the surfaces of the two metal catalysts has a promising potential for air-disinfection in hospitals, communities, and households.

  2. Interferometric SAR Persistent Scatterer Analysis of Mayon volcano, Albay, Philippines

    Science.gov (United States)

    Bato, M. P.; Lagmay, A. A.; Paguican, E. R.

    2011-12-01

    Persistent Scatterer Interferometry (PSInSAR) is a new method of interferometric processing that overcomes the limitations of conventional Synthetic Aperture Radar differential interferometry (DInSAR) and is capable of detecting millimeter scale ground displacements. PSInSAR eliminate anomalies due to atmospheric delays and temporal and geometric decorrelation eminent in tropical regions by exploiting the temporal and spatial characteristics of radar interferometric signatures derived from time-coherent point-wise targets. In this study, PSInSAR conducted in Mayon Volcano, Albay Province, Bicol, Philippines, reveal tectonic deformation passing underneath the volcano. Using 47 combined ERS and ENVISAT ascending and descending imageries, differential movement between the northern horst and graben on which Mayon volcano lies, is as much as 2.5 cm/year in terms of the line-of-sight (LOS) change in the radar signal. The northern horst moves in the northwest direction whereas the graben moves mostly downward. PSInSAR results when coupled with morphological interpretation suggest left-lateral oblique-slip movement of the northern bounding fault of the Oas graben. The PSInSAR results are validated with dGPS measurements. This work presents the functionality of PSInSAR in a humid tropical environment and highlights the probable landslide hazards associated with an oversteepened volcano that may have been further deformed by tectonic activity.

  3. Regional landslide forecasting model using interferometric SAR images

    Institute of Scientific and Technical Information of China (English)

    董育烦; 张发明; 高正夏; 蒯志要

    2008-01-01

    Method of obtaining landslide evaluating information by using Interferometric Synthetic Aperture Radar (InSAR) technique was discussed. More precision landslide surface deformation data extracted from InSAR image need take suitable SAR interferometric data selecting, path tracking, phase unwrapping processes. Then, the DEM model of scope and surface shape of the landslide was built. Combining with geological property of landslide and sliding displacements obtained from InSAR/D-InSAR images, a new landslide forecasting model called equal central angle slice method for those not obviously deformed landslides was put forward. This model breaks the limits of traditional research methods of geology. In this model, the landslide safety factor was calculated by equal central angle slice method, then considering the persistence ratio of the sliding surface based on plastic theory, the minimum safety factor was the phase when plastic area were complete persistence. This new model makes the application of InSAR/D-InSAR technology become more practical in geology hazard research.

  4. Tight formation flying for an along-track SAR interferometer

    Science.gov (United States)

    Gill, Eberhard; Runge, Hartmut

    2004-08-01

    While space-borne synthetic aperture radar (SAR) has evolved into a mature technology over the past two decades, there is a growing interest in interferometric SAR applications. Especially along-track interferometry with its capability to resolve the velocity of on-ground objects and ocean currents is of high interest for scientific applications. The accuracy of the resolved velocity on ground scales directly with the along-track separation between adjacent SAR antennas. Since space vehicles are quite limited in size, a formation flying approach with two SAR instruments distributed onto two spacecraft thus appears to be an innovative approach to along-track SAR interferometry. In the framework of an ESA study, this paper discusses the potential benefits, drawbacks and problems associated with a close formation flight for an along-track interferometry SAR mission. To this end, the absolute and relative orbit reconstruction requirements for the SAR processing chain are derived from basic interferometric principles as well as appropriate baselines of the satellite formation in L-Band and X-Band. A discussion of potential space-borne navigation sensors is presented along with the accuracy of state-of-the-art relative orbit reconstruction. Finally, appropriate thrusters for formation acquisition and control are discussed together with approaches to formation flying guidance and control as well as fuel consumption.

  5. Research on Airborne SAR Imaging Based on Esc Algorithm

    Science.gov (United States)

    Dong, X. T.; Yue, X. J.; Zhao, Y. H.; Han, C. M.

    2017-09-01

    Due to the ability of flexible, accurate, and fast obtaining abundant information, airborne SAR is significant in the field of Earth Observation and many other applications. Optimally the flight paths are straight lines, but in reality it is not the case since some portion of deviation from the ideal path is impossible to avoid. A small disturbance from the ideal line will have a major effect on the signal phase, dramatically deteriorating the quality of SAR images and data. Therefore, to get accurate echo information and radar images, it is essential to measure and compensate for nonlinear motion of antenna trajectories. By means of compensating each flying trajectory to its reference track, MOCO method corrects linear phase error and quadratic phase error caused by nonlinear antenna trajectories. Position and Orientation System (POS) data is applied to acquiring accuracy motion attitudes and spatial positions of antenna phase centre (APC). In this paper, extend chirp scaling algorithm (ECS) is used to deal with echo data of airborne SAR. An experiment is done using VV-Polarization raw data of C-band airborne SAR. The quality evaluations of compensated SAR images and uncompensated SAR images are done in the experiment. The former always performs better than the latter. After MOCO processing, azimuth ambiguity is declined, peak side lobe ratio (PSLR) effectively improves and the resolution of images is improved obviously. The result shows the validity and operability of the imaging process for airborne SAR.

  6. Psychobehavioural responses to the 2014 Middle East respiratory syndrome-novel corona virus (MERS CoV) among adults in two shopping malls in Jeddah, western Saudi Arabia.

    Science.gov (United States)

    AlNajjar, N S; Attar, L M; Farahat, F M; AlThaqafi, A

    2017-02-01

    Sporadic cases of Middle East respiratory syndrome caused by a novel corona virus (MERS-CoV) were first detected in Saudi Arabia in June 2012. The number of cases was highest during April and May 2014. To assess determinants of psychobehavioural responses among the general population in Jeddah, western Saudi Arabia, a cross-sectional survey was conducted at the end of June 2014. Data included sociodemographic characteristics, level of anxiety, protective measures and social avoidance responses. A total of 358 participants completed the questionnaire; 58.4% were female, and the age range was 18-72 years. None of the participants was diagnosed with MERS-CoV. More than half (57.7%) recorded a moderate anxiety score using a visual analogue scale. Anxiety level was significantly associated with increased perception of susceptibility to infection and social avoidance behaviours related to travel and being in public places.

  7. Ground Displacement Measurement of the 2013 Balochistan Earthquake with interferometric TerraSAR-X ScanSAR data

    Science.gov (United States)

    Yague-Martinez, N.; Fielding, E. J.; Haghshenas-Haghighi, M.; Cong, X.; Motagh, M.

    2014-12-01

    This presentation will address the 24 September 2013 Mw 7.7 Balochistan Earthquake in western Pakistan from the point of view of interferometric processing algorithms of wide-swath TerraSAR-X ScanSAR images. The algorithms are also valid for TOPS acquisition mode, the operational mode of the Sentinel-1A ESA satellite that was successfully launched in April 2014. Spectral properties of burst-mode data and an overview of the interferometric processing steps of burst-mode acquisitions, emphasizing the importance of the co-registration stage, will be provided. A co-registration approach based on incoherent cross-correlation will be presented and applied to seismic scenarios. Moreover geodynamic corrections due to differential atmospheric path delay and differential solid Earth tides are considered to achieve accuracy in the order of several centimeters. We previously derived a 3D displacement map using cross-correlation techniques applied to optical images from Landsat-8 satellite and TerraSAR-X ScanSAR amplitude images. The Landsat-8 cross-correlation measurements cover two horizontal directions, and the TerraSAR-X displacements include both horizontal along-track and slant-range (radar line-of-sight) measurements that are sensitive to vertical and horizontal deformation. It will be justified that the co-seismic displacement map from TerraSAR-X ScanSAR data may be contaminated by postseismic deformation due to the fact that the post-seismic acquisition took place one month after the main shock, confirmed in part by a TerraSAR-X stripmap interferogram (processed with conventional InSAR) covering part of the area starting on 27 September 2013. We have arranged the acquisition of a burst-synchronized stack of TerraSAR-X ScanSAR images over the affected area after the earthquake. It will be possible to apply interferometry to these data to measure the lower magnitude of the expected postseismic displacements. The processing of single interferograms will be discussed. A

  8. Cross-reactive antibodies in convalescent SARS patients' sera against the emerging novel human coronavirus EMC (2012) by both immunofluorescent and neutralizing antibody tests.

    Science.gov (United States)

    Chan, Kwok-Hung; Chan, Jasper Fuk-Woo; Tse, Herman; Chen, Honglin; Lau, Candy Choi-Yi; Cai, Jian-Piao; Tsang, Alan Ka-Lun; Xiao, Xincai; To, Kelvin Kai-Wang; Lau, Susanna Kar-Pui; Woo, Patrick Chiu-Yat; Zheng, Bo-Jiang; Wang, Ming; Yuen, Kwok-Yung

    2013-08-01

    A severe acute respiratory syndrome (SARS)-like disease due to a novel betacoronavirus, human coronavirus EMC (HCoV-EMC), has emerged recently. HCoV-EMC is phylogenetically closely related to Tylonycteris-bat-coronavirus-HKU4 and Pipistrellus-bat-coronavirus-HKU5 in Hong Kong. We conducted a seroprevalence study on archived sera from 94 game-food animal handlers at a wild life market, 28 SARS patients, and 152 healthy blood donors in Southern China to assess the zoonotic potential and evidence for intrusion of HCoV-EMC and related viruses into humans. Anti-HCoV-EMC and anti-SARS-CoV antibodies were detected using screening indirect immunofluorescence (IF) and confirmatory neutralizing antibody tests. Two (2.1%) animal handlers had IF antibody titer of ≥ 1:20 against both HCoV-EMC and SARS-CoV with neutralizing antibody titer of SARS patients had significant IF antibody titers with 7/28 (25%) having anti-HCoV-EMC neutralizing antibodies at low titers which significantly correlated with that of HCoV-OC43. Bioinformatics analysis demonstrated a significant B-cell epitope overlapping the heptad repeat-2 region of Spike protein. Virulence of SARS-CoV over other betacoronaviruses may boost cross-reactive neutralizing antibodies against other betacoronaviruses. Convalescent SARS sera may contain cross-reactive antibodies against other betacoronaviruses and confound seroprevalence study for HCoV-EMC. Copyright © 2013 The British Infection Association. Published by Elsevier Ltd. All rights reserved.

  9. Temporal variability and social heterogeneity in disease transmission: the case of SARS in Hong Kong.

    Directory of Open Access Journals (Sweden)

    Anne Cori

    2009-08-01

    Full Text Available The extent to which self-adopted or intervention-related changes in behaviors affect the course of epidemics remains a key issue for outbreak control. This study attempted to quantify the effect of such changes on the risk of infection in different settings, i.e., the community and hospitals. The 2002-2003 severe acute respiratory syndrome (SARS outbreak in Hong Kong, where 27% of cases were healthcare workers, was used as an example. A stochastic compartmental SEIR (susceptible-exposed-infectious-removed model was used: the population was split into healthcare workers, hospitalized people and general population. Super spreading events (SSEs were taken into account in the model. The temporal evolutions of the daily effective contact rates in the community and hospitals were modeled with smooth functions. Data augmentation techniques and Markov chain Monte Carlo (MCMC methods were applied to estimate SARS epidemiological parameters. In particular, estimates of daily reproduction numbers were provided for each subpopulation. The average duration of the SARS infectious period was estimated to be 9.3 days (+/-0.3 days. The model was able to disentangle the impact of the two SSEs from background transmission rates. The effective contact rates, which were estimated on a daily basis, decreased with time, reaching zero inside hospitals. This observation suggests that public health measures and possible changes in individual behaviors effectively reduced transmission, especially in hospitals. The temporal patterns of reproduction numbers were similar for healthcare workers and the general population, indicating that on average, an infectious healthcare worker did not infect more people than any other infectious person. We provide a general method to estimate time dependence of parameters in structured epidemic models, which enables investigation of the impact of control measures and behavioral changes in different settings.

  10. Date of origin of the SARS coronavirus strains

    Directory of Open Access Journals (Sweden)

    Cai Lun

    2004-02-01

    Full Text Available Abstract Background A new respiratory infectious epidemic, severe acute respiratory syndrome (SARS, broke out and spread throughout the world. By now the putative pathogen of SARS has been identified as a new coronavirus, a single positive-strand RNA virus. RNA viruses commonly have a high rate of genetic mutation. It is therefore important to know the mutation rate of the SARS coronavirus as it spreads through the population. Moreover, finding a date for the last common ancestor of SARS coronavirus strains would be useful for understanding the circumstances surrounding the emergence of the SARS pandemic and the rate at which SARS coronavirus diverge. Methods We propose a mathematical model to estimate the evolution rate of the SARS coronavirus genome and the time of the last common ancestor of the sequenced SARS strains. Under some common assumptions and justifiable simplifications, a few simple equations incorporating the evolution rate (K and time of the last common ancestor of the strains (T0 can be deduced. We then implemented the least square method to estimate K and T0 from the dataset of sequences and corresponding times. Monte Carlo stimulation was employed to discuss the results. Results Based on 6 strains with accurate dates of host death, we estimated the time of the last common ancestor to be about August or September 2002, and the evolution rate to be about 0.16 base/day, that is, the SARS coronavirus would on average change a base every seven days. We validated our method by dividing the strains into two groups, which coincided with the results from comparative genomics. Conclusion The applied method is simple to implement and avoid the difficulty and subjectivity of choosing the root of phylogenetic tree. Based on 6 strains with accurate date of host death, we estimated a time of the last common ancestor, which is coincident with epidemic investigations, and an evolution rate in the same range as that reported for the HIV-1 virus.

  11. Indoor experimental facility for airborne synthetic aperture radar (SAR) configurations - rail-SAR

    Science.gov (United States)

    Kirose, Getachew; Phelan, Brian R.; Sherbondy, Kelly D.; Ranney, Kenneth I.; Koenig, Francois; Narayanan, Ram M.

    2014-05-01

    The Army Research Laboratory (ARL) is developing an indoor experimental facility to evaluate and assess airborne synthetic-aperture-radar-(SAR)-based detection capabilities. The rail-SAR is located in a multi-use facility that also provides a base for research and development in the area of autonomous robotic navigation. Radar explosive hazard detection is one key sensordevelopment area to be investigated at this indoor facility. In particular, the mostly wooden, multi-story building houses a two (2) story housing structure and an open area built over a large sandbox. The housing structure includes reconfigurable indoor walls which enable the realization of multiple See-Through-The-Wall (STTW) scenarios. The open sandbox, on the other hand, allows for surface and buried explosive hazard scenarios. The indoor facility is not rated for true explosive hazard materials so all targets will need to be inert and contain surrogate explosive fills. In this paper we discuss the current system status and describe data collection exercises conducted using canonical targets and frequencies that may be of interest to designers of ultra-wideband (UWB) airborne, ground penetrating SAR systems. A bi-static antenna configuration will be used to investigate the effects of varying airborne SAR parameters such as depression angle, bandwidth, and integration angle, for various target types and deployment scenarios. Canonical targets data were used to evaluate overall facility capabilities and limitations. These data is analyzed and summarized for future evaluations. Finally, processing techniques for dealing with RF multi-path and RFI due to operating inside the indoor facility are described in detail. Discussion of this facility and its capabilities and limitations will provide the explosive hazard community with a great airborne platform asset for sensor to target assessment.

  12. Multi-look polarimetric SAR image filtering using simulated annealing

    DEFF Research Database (Denmark)

    Schou, Jesper

    2000-01-01

    Based on a previously published algorithm capable of estimating the radar cross-section in synthetic aperture radar (SAR) intensity images, a new filter is presented utilizing multi-look polarimetric SAR images. The underlying mean covariance matrix is estimated from the observed sample covariance...... matrices, and by applying a set of small orientation-dependent filters in an iterative scheme, the input image becomes highly filtered while maintaining most of the structures in the scene. Results using multi-look polarimetric C-band data from the Danish airborne polarimetric SAR, EMISAR, are presented....

  13. Quad-Polarimetric SAR for Detection and Characterization of Icebergs

    Science.gov (United States)

    Akbari, V.; Brekke, C.; Doulgeris, A. P.; Storvold, R.; Silvertsen, A.

    2016-08-01

    This paper evaluates the performance of fully polarimetric SAR data in iceberg detection and characterization. The study aims to explore the potential of RADARSAT- 2 SAR data to detect icebergs and growlers in Svalbard that have broken off from the glaciers nearby. To be able to detect iceberg/growlers in a SAR image, a significant contrast between iceberg and background clutter is required. The sublook cross-correlation magnitude (SCM) is extracted from the complex cross-correlation between subapeture images and contrast between iceberg and sea clutter is measured. The results of target-to-clutter ratio from the SCM indicate that the sublook analysis has an impact on detection performance.

  14. SAR image effects on coherence and coherence estimation.

    Energy Technology Data Exchange (ETDEWEB)

    Bickel, Douglas Lloyd

    2014-01-01

    Radar coherence is an important concept for imaging radar systems such as synthetic aperture radar (SAR). This document quantifies some of the effects in SAR which modify the coherence. Although these effects can disrupt the coherence within a single SAR image, this report will focus on the coherence between separate images, such as for coherent change detection (CCD) processing. There have been other presentations on aspects of this material in the past. The intent of this report is to bring various issues that affect the coherence together in a single report to support radar engineers in making decisions about these matters.

  15. Mapping and monitoring renewable resources with space SAR

    Science.gov (United States)

    Ulaby, F. T.; Brisco, B.; Dobson, M. C.; Moezzi, S.

    1983-01-01

    The SEASAT-A SAR and SIR-A imagery was examined to evaluate the quality and type of information that can be extracted and used to monitor renewable resources on Earth. Two tasks were carried out: (1) a land cover classification study which utilized two sets of imagery acquired by the SEASAT-A SAR, one set by SIR-A, and one LANDSAT set (4 bands); and (2) a change detection to examine differences between pairs of SEASAT-A SAR images and relates them to hydrologic and/or agronomic variations in the scene.

  16. Wind mapping offshore in coastal Mediterranean area using SAR images

    DEFF Research Database (Denmark)

    Calaudi, Rosamaria; Arena, Felice; Badger, Merete

    Satellite observations of the ocean surface from Synthetic Aperture Radars (SAR) provide information about the spatial wind variability over large areas. This is of special interest in the Mediterranean, where spatial wind information is only provided by sparse buoys, often with long periods...... of missing data. Here, we focus on evaluating the use of SAR for offshore wind mapping. Preliminary results from the analysis of SAR-based ocean winds in Mediterranean areas show interesting large scale wind flow features consistent with results from previous studies using numerical models and space borne...

  17. Offshore Wind Resource Estimation in Mediterranean Area Using SAR Images

    DEFF Research Database (Denmark)

    Calaudi, Rosamaria; Arena, Felice; Badger, Merete

    Satellite observations of the ocean surface from Synthetic Aperture Radars (SAR) provide information about the spatial wind variability over large areas. This is of special interest in the Mediterranean, where spatial wind information is only provided by sparse buoys, often with long periods...... of missing data. Here, we focus on evaluating the use of SAR for offshore wind mapping. Preliminary results from the analysis of SAR-based ocean winds in Mediterranean areas show interesting large scale wind flow features consistent with results from previous studies using numerical models and space borne...

  18. Compact polarimetric SAR product and calibration considerations for target analysis

    Science.gov (United States)

    Sabry, Ramin

    2016-10-01

    Compact polarimetric (CP) data exploitation is currently of growing interest considering the new generation of such Synthetic Aperture Radar (SAR) systems. These systems offer target detection and classification capabilities comparable to those of polarimetric SARs (PolSAR) with less stringent requirements. A good example is the RADARSAT Constellation Mission (RCM). In this paper, some characteristic CP products are described and effects of CP mode deviation from ideal circular polarization transmit on classifications are modeled. The latter is important for operation of typical CP modes (e.g., RCM). The developed model can be used to estimate the ellipticity variation from CP measured data, and hence, calibrate the classification products.

  19. An overview on SAR measurements of sea surface wind

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Studies show that synthetic aperture radar (SAR) has the capability of providing high-resolution (sub-kilometer) sea surface wind fields. This is very useful for applications where knowledge of the sea surface wind at fine scales is crucial. This paper aims to review the latest work on sea surface wind field retrieval using SAR images. As shown, many different approaches have been developed for retrieving wind speed and wind direction. However, much more work will be required to fully exploit the SAR data for improving the retrieval accuracy of high-resolution winds and for producing wind products in an operational sense.

  20. SAR antenna design for ambiguity and multipath suppression

    DEFF Research Database (Denmark)

    Christensen, Erik Lintz; Dich, Mikael

    1993-01-01

    A high resolution airborne synthetic aperture radar (SAR) has been developed at the Electromagnetics Institute (EMI) for remote sensing applications. The paper considers the radiation of antennas for a SAR system from a systems perspective. The basic specifications of an idealised antenna...... are obtained from the required swath and the azimuth footprint needed for the SAR processing. The radiation from a real antenna causes unwanted signal returns that lead to intensity variations (multipath) and ghost echoes (ambiguity). Additional specifications are deduced by considering these signals...

  1. hPEPT1 Affinity and Translocation of Selected Gln-Sar and Glu-Sar Dipeptide Derivatives

    DEFF Research Database (Denmark)

    Eriksson, A. H.; Elm, Peter L.; Begtrup, Mikael

    2005-01-01

    The intestinal di- and tripeptide transporter hPEPT1 is considered responsible for the absorption of di- and tripeptides arising from digestion, along with several drugs and prodrugs. In order to gather information on the binding site of the protein, several structure-affinity relationships have....... The esters l-Glu(O-i-Bu)-Sar and l-Glu(OCH2Ada)-Sar and the amides l-Gln(N,N-dimethyl)-Sar and l-Gln(N-piperidinyl)-Sar were synthesized, and affinity to and translocation via hPEPT1 were investigated in mature Caco-2 cell monolayers, grown on permeable supports. Affinity was estimated in a competition assay...... using 14C-labeled Gly-Sar. Translocation was measured as fluorescence ratios induced by the substrates using the fluorescent probe BCECF and an epifluorescence microscope setup. All compounds showed high affinity to hPEPT1, but only the amides l-Gln(N,N-dimethyl)-Sar and l-Gln(N-piperidinyl)-Sar were...

  2. Speckle Suppression Method for SAR Image

    Directory of Open Access Journals (Sweden)

    Jiming Guo

    2013-04-01

    Full Text Available In this study, a new speckle reduction method was proposed in terms of by Bidimensional Empirical Mode Decomposition (BEMD. In this method, the SAR image containing speckle noise was decomposed into a number of elementary components by using BEMD and then the extremal points are done the boundary equivalent extension after screening and the residual continue to be done the boundary equivalent extension until screening is completed, finally, the image was reconstructed, which reduced the speckle noise. Experimental results show that this method has good effect on suppressing speckle noise, compared to the average filter, median filter and gaussian filter and has advantages of sufficiently retaining edge and detail information while suppressing speckle noise.

  3. SAR polar format implementation with MATLAB.

    Energy Technology Data Exchange (ETDEWEB)

    Martin, Grant D.; Doerry, Armin Walter

    2005-11-01

    Traditional polar format image formation for Synthetic Aperture Radar (SAR) requires a large amount of processing power and memory in order to accomplish in real-time. These requirements can thus eliminate the possible usage of interpreted language environments such as MATLAB. However, with trapezoidal aperture phase history collection and changes to the traditional polar format algorithm, certain optimizations make MATLAB a possible tool for image formation. Thus, this document's purpose is two-fold. The first outlines a change to the existing Polar Format MATLAB implementation utilizing the Chirp Z-Transform that improves performance and memory usage achieving near realtime results for smaller apertures. The second is the addition of two new possible image formation options that perform a more traditional interpolation style image formation. These options allow the continued exploration of possible interpolation methods for image formation and some preliminary results comparing image quality are given.

  4. Antibody binding site mapping of SARS-CoV spike protein receptor-binding domain by a combination of yeast surface display and phage peptide library screening.

    Science.gov (United States)

    Zhang, Xiaoping; Wang, Jingxue; Wen, Kun; Mou, Zhirong; Zou, Liyun; Che, Xiaoyan; Ni, Bing; Wu, Yuzhang

    2009-12-01

    The receptor-binding domain (RBD) of severe acute respiratory syndrome coronavirus (SARS-CoV) spike (S) protein plays an important role in viral infection, and is a potential major neutralizing determinant. In this study, three hybridoma cell lines secreting specific monoclonal antibodies against the RBD of the S protein were generated and their exact binding sites were identified. Using yeast surface display, the binding sites of these antibodies were defined to two linear regions on the RBD: S(337-360) and S(380-399). Using these monoclonal antibodies in phage peptide library screening identified 10 distinct mimotopes 12 amino acids in length. Sequence comparison between native epitopes and these mimotopes further confirmed the binding sites, and revealed key amino acid residues involved in antibody binding. None of these antibodies could neutralize the murine leukemia virus pseudotyped expressing the SARS-CoV spike protein (MLV/SARS-CoV). However, these mAbs could be useful in the diagnosis of SARS-CoV due to their exclusive reactivity with SARS-CoV. Furthermore, this study established a feasible platform for epitope mapping. Yeast surface display combined with phage peptide library screening provides a convenient strategy for the identification of epitope peptides from certain antigenic proteins.

  5. Palmitoylation of SARS-CoV S protein is necessary for partitioning into detergent-resistant membranes and cell-cell fusion but not interaction with M protein

    Science.gov (United States)

    McBride, Corrin E.; Machamer, Carolyn E.

    2010-01-01

    Coronaviruses are enveloped RNA viruses that generally cause mild disease in humans. However, the recently emerged coronavirus that caused severe acute respiratory syndrome (SARS-CoV) is the most pathogenic human coronavirus discovered to date. The SARS-CoV spike (S) protein mediates virus entry by binding cellular receptors and inducing fusion between the viral envelope and the host cell membrane. Coronavirus S proteins are palmitoylated, which may affect function. Here, we created a non-palmitoylated SARS-CoV S protein by mutating all nine cytoplasmic cysteine residues. Palmitoylation of SARS-CoV S was required for partitioning into detergent-resistant membranes and for cell-cell fusion. Surprisingly, however, palmitoylation of S was not required for interaction with SARS-CoV M protein. This contrasts with the requirement for palmitoylation of mouse hepatitis virus S protein for interaction with M protein, and may point to important differences in assembly and infectivity of these two coronaviruses. PMID:20580052

  6. Radionuclide release calculations for SAR-08

    Energy Technology Data Exchange (ETDEWEB)

    Thomson, Gavin; Miller, Alex; Smith, Graham; Jackson, Duncan (Enviros Consulting Ltd, Wolverhampton (United Kingdom))

    2008-04-15

    Following a review by the Swedish regulatory authorities of the post-closure safety assessment of the SFR 1 disposal facility for low and intermediate waste (L/ILW), SAFE, the SKB has prepared an updated assessment called SAR-08. This report describes the radionuclide release calculations that have been undertaken as part of SAR-08. The information, assumptions and data used in the calculations are reported and the results are presented. The calculations address issues raised in the regulatory review, but also take account of new information including revised inventory data. The scenarios considered include the main case of expected behaviour of the system, with variants; low probability releases, and so-called residual scenarios. Apart from these scenario uncertainties, data uncertainties have been examined using a probabilistic approach. Calculations have been made using the AMBER software. This allows all the component features of the assessment model to be included in one place. AMBER has been previously used to reproduce results the corresponding calculations in the SAFE assessment. It is also used in demonstration of the IAEA's near surface disposal assessment methodology ISAM and has been subject to very substantial verification tests and has been used in verifying other assessment codes. Results are presented as a function of time for the release of radionuclides from the near field, and then from the far field into the biosphere. Radiological impacts of the releases are reported elsewhere. Consideration is given to each radionuclide and to each component part of the repository. The releases from the entire repository are also presented. The peak releases rates are, for most scenarios, due to organic C-14. Other radionuclides which contribute to peak release rates include inorganic C-14, Ni-59 and Ni-63. (author)

  7. Modeling the Early Events of Severe Acute Respiratory Syndrome Coronavirus Infection In Vitro

    Science.gov (United States)

    Yen, Yu-Ting; Liao, Fang; Hsiao, Cheng-Hsiang; Kao, Chuan-Liang; Chen, Yee-Chun; Wu-Hsieh, Betty A.

    2006-01-01

    The clinical picture of severe acute respiratory syndrome (SARS) is characterized by pulmonary inflammation and respiratory failure, resembling that of acute respiratory distress syndrome. However, the events that lead to the recruitment of leukocytes are poorly understood. To study the cellular response in the acute phase of SARS coronavirus (SARS-CoV)-host cell interaction, we investigated the induction of chemokines, adhesion molecules, and DC-SIGN (dendritic cell-specific ICAM-3-grabbing nonintegrin) by SARS-CoV. Immunohistochemistry revealed neutrophil, macrophage, and CD8 T-cell infiltration in the lung autopsy of a SARS patient who died during the acute phase of illness. Additionally, pneumocytes and macrophages in the patient's lung expressed P-selectin and DC-SIGN. In in vitro study, we showed that the A549 and THP-1 cell lines were susceptible to SARS-CoV. A549 cells produced CCL2/monocyte chemoattractant protein 1 (MCP-1) and CXCL8/interleukin-8 (IL-8) after interaction with SARS-CoV and expressed P-selectin and VCAM-1. Moreover, SARS-CoV induced THP-1 cells to express CCL2/MCP-1, CXCL8/IL-8, CCL3/MIP-1α, CXCL10/IP-10, CCL4/MIP-1β, and CCL5/RANTES, which attracted neutrophils, monocytes, and activated T cells in a chemotaxis assay. We also demonstrated that DC-SIGN was inducible in THP-1 as well as A549 cells after SARS-CoV infection. Our in vitro experiments modeling infection in humans together with the study of a lung biopsy of a patient who died during the early phase of infection demonstrated that SARS-CoV, through a dynamic interaction with lung epithelial cells and monocytic cells, creates an environment conducive for immune cell migration and accumulation that eventually leads to lung injury. PMID:16501078

  8. ISCE: A Modular, Reusable Library for Scalable SAR/InSAR Processing

    Science.gov (United States)

    Agram, P. S.; Lavalle, M.; Gurrola, E. M.; Sacco, G. F.; Rosen, P. A.

    2016-12-01

    Traditional community SAR/InSAR processing software tools have primarily focused on differential interferometry and Solid Earth applications. The InSAR Scientific Computing Environment (ISCE) was specifically designed to support the Earth Sciences user community as well as large scale operational processing tasks, thanks to its two-layered (Python+C/Fortran) architecture and modular framework. ISCE is freely distributed as a source tarball, allowing advanced users to modify and extend it for their research purposes and developing exploratory applications, while providing a relatively simple user interface for novice users to perform routine data analysis efficiently. Modular design of the ISCE library also enables easier development of applications to address the needs of Ecosystems, Cryosphere and Disaster Response communities in addition to the traditional Solid Earth applications. In this talk, we would like to emphasize the broader purview of the ISCE library and some of its unique features that sets it apart from other freely available community software like GMTSAR and DORIS, including: Support for multiple geometry regimes - Native Doppler (ALOS-1) as well Zero Doppler (ESA missions) systems. Support for data acquired by airborne platforms - e.g, JPL's UAVSAR and AirMOSS, DLR's F-SAR. Radiometric Terrain Correction - Auxiliary output layers from the geometry modules include projection angles, incidence angles, shadow-layover masks. Dense pixel offsets - Parallelized amplitude cross correlation for cryosphere / ionospheric correction applications. Rubber sheeting - Pixel-by-pixel offsets fields for resampling slave imagery for geometric co-registration/ ionospheric corrections. Preliminary Tandem-X processing support - Bistatic geometry modules. Extensibility to support other non-Solid Earth missions - Modules can be directly adopted for use with other SAR missions, e.g., SWOT. Preliminary support for multi-dimensional data products- multi-polarization, multi

  9. A 193-amino acid fragment of the SARS coronavirus S protein efficiently binds angiotensin-converting enzyme 2.

    Science.gov (United States)

    Wong, Swee Kee; Li, Wenhui; Moore, Michael J; Choe, Hyeryun; Farzan, Michael

    2004-01-30

    The coronavirus spike (S) protein mediates infection of receptor-expressing host cells and is a critical target for antiviral neutralizing antibodies. Angiotensin-converting enzyme 2 (ACE2) is a functional receptor for the coronavirus (severe acute respiratory syndrome (SARS)-CoV) that causes SARS. Here we demonstrate that a 193-amino acid fragment of the S protein (residues 318-510) bound ACE2 more efficiently than did the full S1 domain (residues 12-672). Smaller S protein fragments, expressing residues 327-510 or 318-490, did not detectably bind ACE2. A point mutation at aspartic acid 454 abolished association of the full S1 domain and of the 193-residue fragment with ACE2. The 193-residue fragment blocked S protein-mediated infection with an IC(50) of less than 10 nm, whereas the IC(50) of the S1 domain was approximately 50 nm. These data identify an independently folded receptor-binding domain of the SARS-CoV S protein.

  10. Decreasing range resolution of a SAR image to permit correction of motion measurement errors beyond the SAR range resolution

    Science.gov (United States)

    Doerry, Armin W.; Heard, Freddie E.; Cordaro, J. Thomas

    2010-07-20

    Motion measurement errors that extend beyond the range resolution of a synthetic aperture radar (SAR) can be corrected by effectively decreasing the range resolution of the SAR in order to permit measurement of the error. Range profiles can be compared across the slow-time dimension of the input data in order to estimate the error. Once the error has been determined, appropriate frequency and phase correction can be applied to the uncompressed input data, after which range and azimuth compression can be performed to produce a desired SAR image.

  11. Bat-to-human: spike features determining 'host jump' of coronaviruses SARS-CoV, MERS-CoV, and beyond.

    Science.gov (United States)

    Lu, Guangwen; Wang, Qihui; Gao, George F

    2015-08-01

    Both severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle East respiratory syndrome coronavirus (MERS-CoV) are zoonotic pathogens that crossed the species barriers to infect humans. The mechanism of viral interspecies transmission is an important scientific question to be addressed. These coronaviruses contain a surface-located spike (S) protein that initiates infection by mediating receptor-recognition and membrane fusion and is therefore a key factor in host specificity. In addition, the S protein needs to be cleaved by host proteases before executing fusion, making these proteases a second determinant of coronavirus interspecies infection. Here, we summarize the progress made in the past decade in understanding the cross-species transmission of SARS-CoV and MERS-CoV by focusing on the features of the S protein, its receptor-binding characteristics, and the cleavage process involved in priming. Copyright © 2015 Elsevier Ltd. All rights reserved.

  12. Massachusetts Bay - Internal wave packets digitized from SAR imagery

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This feature class contains internal wave packets digitized from SAR imagery at 1:350,000 scale in Massachusetts Bay. Internal waves are nonsinusoidal waves that...

  13. Road network extraction in classified SAR images using genetic algorithm

    Institute of Scientific and Technical Information of China (English)

    肖志强; 鲍光淑; 蒋晓确

    2004-01-01

    Due to the complicated background of objectives and speckle noise, it is almost impossible to extract roads directly from original synthetic aperture radar(SAR) images. A method is proposed for extraction of road network from high-resolution SAR image. Firstly, fuzzy C means is used to classify the filtered SAR image unsupervisedly, and the road pixels are isolated from the image to simplify the extraction of road network. Secondly, according to the features of roads and the membership of pixels to roads, a road model is constructed, which can reduce the extraction of road network to searching globally optimization continuous curves which pass some seed points. Finally, regarding the curves as individuals and coding a chromosome using integer code of variance relative to coordinates, the genetic operations are used to search global optimization roads. The experimental results show that the algorithm can effectively extract road network from high-resolution SAR images.

  14. Airborne X-band SAR tomography for forest volumes

    Science.gov (United States)

    Muirhead, Fiona; Woodhouse, Iain H.; Mulgrew, Bernard

    2016-10-01

    We evaluate the usefulness of X-band, airborne (helicopter) data for tomography over forestry regions and discuss the use of compressive sensing algorithms to aid X-band airborne tomography. This work examines if there is any information that can be gained from forest volumes when analysing forestry sites using X-band data. To do so, different forest scenarios were simulated and a fast SAR simulator was used to model airborne multipass SAR data, at X-band, with parameters based on Leonardo's PicoSAR instrument. Model simulations considered varying factors that affect the height determination when using tomography. The main parameters that are considered here are: motion errors of the platform, the spacing of the flight paths, the resolution of the SAR images and plant life being present under the canopy (an understory). It was found that residual motion errors from the airborne platform cause the largest error in the tomographic profile.

  15. Copernicus Sentinel-1 Satellite And C-SAR Instrument

    Science.gov (United States)

    Panetti, Aniceto; Rostan, Friedhelm; L'Abbate, Michelangelo; Bruno, Claudio; Bauleo, Antonio; Catalano, Toni; Cotogni, Marco; Galvagni, Luigi; Pietropaolo, Andrea; Taini, Giacomo; Venditti, Paolo; Huchler, Markus; Torres, Ramon; Lokaas, Svein; Bibby, David

    2013-12-01

    The Copernicus Sentinel-1 Earth Radar Observatory, a mission funded by the European Union and developed by ESA, is a constellation of two C-band radar satellites. The satellites have been conceived to be a continuous and reliable source of C-band SAR imagery for operational applications such as mapping of global landmasses, coastal zones and monitoring of shipping routes. The Sentinel-1 satellites are built by an industrial consortium led by Thales Alenia Space Italia as Prime Contractor and with Astrium GmbH as SAR Instrument Contractor. The paper describes the general satellite architecture, the spacecraft subsystems, AIT flow and the satellite key performances. It provides also an overview on the C-SAR Instrument, its development status and pre- launch SAR performance prediction.

  16. Evolution and Variation of the SARS-CoV Genome

    Institute of Scientific and Technical Information of China (English)

    Jianfei Hu; Zizhang Zhang; Wei Wei; Songgang Li; Jun Wang; Jian Wang; Jun Yu; Huanming Yang; Jing Wang; Jing Xu; Wei Li; Yujun Han; Yan Li; Jia Ji; Jia Ye; Zhao Xu

    2003-01-01

    Knowledge of the evolution of pathogens is of great medical and biological significance to the prevention, diagnosis, and therapy of infectious diseases. In order to understand the origin and evolution of the SARS-CoV (severe acute respiratory syndrome-associated coronavirus), we collected complete genome sequences of all viruses available in GenBank, and made comparative analyses with the SARSCoV. Genomic signature analysis demonstrates that the coronaviruses all take the TGTT as their richest tetranucleotide except the SARS-CoV. A detailed analysis of the forty-two complete SARS-CoV genome sequences revealed the existence of two distinct genotypes, and showed that these isolates could be classified into four groups. Our manual analysis of the BLASTN results demonstrates that the HE (hemagglutinin-esterase) gene exists in the SARS-CoV, and many mutations made it unfamiliar to us.

  17. A beamforming algorithm for bistatic SAR image formation.

    Energy Technology Data Exchange (ETDEWEB)

    Yocky, David Alan; Wahl, Daniel Eugene; Jakowatz, Charles V., Jr.

    2010-03-01

    Beamforming is a methodology for collection-mode-independent SAR image formation. It is essentially equivalent to backprojection. The authors have in previous papers developed this idea and discussed the advantages and disadvantages of the approach to monostatic SAR image formation vis--vis the more standard and time-tested polar formatting algorithm (PFA). In this paper we show that beamforming for bistatic SAR imaging leads again to a very simple image formation algorithm that requires a minimal number of lines of code and that allows the image to be directly formed onto a three-dimensional surface model, thus automatically creating an orthorectified image. The same disadvantage of beamforming applied to monostatic SAR imaging applies to the bistatic case, however, in that the execution time for the beamforming algorithm is quite long compared to that of PFA. Fast versions of beamforming do exist to help alleviate this issue. Results of image reconstructions from phase history data are presented.

  18. A beamforming algorithm for bistatic SAR image formation

    Science.gov (United States)

    Jakowatz, Charles V., Jr.; Wahl, Daniel E.; Yocky, David A.

    2010-04-01

    Beamforming is a methodology for collection-mode-independent SAR image formation. It is essentially equivalent to backprojection. The authors have in previous papers developed this idea and discussed the advantages and disadvantages of the approach to monostatic SAR image formation vis-à-vis the more standard and time-tested polar formatting algorithm (PFA). In this paper we show that beamforming for bistatic SAR imaging leads again to a very simple image formation algorithm that requires a minimal number of lines of code and that allows the image to be directly formed onto a three-dimensional surface model, thus automatically creating an orthorectified image. The same disadvantage of beamforming applied to monostatic SAR imaging applies to the bistatic case, however, in that the execution time for the beamforming algorithm is quite long compared to that of PFA. Fast versions of beamforming do exist to help alleviate this issue. Results of image reconstructions from phase history data are presented.

  19. Brief Analysis on the Development and Application of Spaceborne SAR

    Directory of Open Access Journals (Sweden)

    Deng Yun-kai

    2012-03-01

    Full Text Available Spaceborne SAR, which is a kind of initiatively microwave imaging sensor, plays an important role in gathering information with its capability of all-day and all-weather imaging, and has become an indispensable sensor for observing the earth. With the development of SAR techniques, Spaceborne SAR has been provided with the ability of High-Resolution Wide-Swath, miniaturization with low cost, bistatic and multi-mode imaging, and Ground Moving Target Indicating (GMTI, so more accurate information about the culture could be obtained with lower cost. In the meantime, more technique problems with muliti-mode, new work system and complex environment are arising and needed to be solved. The main work of this paper is discussing the current situation and the future development of Spaceborne SAR.

  20. An Improved GLRT Method for Target Detection in SAR Imagery

    Directory of Open Access Journals (Sweden)

    Ju Yingyun

    2015-01-01

    Full Text Available Automatic ground vehicle detection based on SAR imagery is one of the important military applications of SAR. A region-based generalized likelihood ratio test (GLRT method is proposed in this paper, and this method combines the GLRT detection theory and image segmentation technology. First, the SAR imagery is roughly segmented as land clutter region and potential target region through the split and merge procedure often used for processing the original images. Then, based on the segmentation results, the reasonable statistical models for the data in the two regions are built respectively. Finally, with the knowledge of statistical characteristics of clutter and target, GLRT detection method is applied to the each pixel in the potential target region to obtain more accurate detection results. Experimental results based on real SAR data show that the proposed method can effectively detect the ground vehicle targets from the land clutter with excellent accuracy and speed.