New T Tauri stars in Chamaeleon I and Chamaeleon II

Science.gov (United States)

Hartigan, Patrick

1993-01-01

A new objective prism survey of the entire Chamaeleon I dark cloud and 2/3 of the Chamaeleon II cloud has uncovered 26 new H-alpha emission line objects that were missed by previous H-alpha plate surveys. The new H-alpha emission line objects have similar IR colors and spatial distributions to the known T Tauri stars in these dark clouds, and could represent the very low mass end of the stellar population in these clouds or an older, less active component to the usual classical T Tauri star population. The new H-alpha survey identified 70 percent of the total known Young Stellar Objects (YSOs) in Cha I, compared with 35 percent for IRAS, and 25 percent from the Einstein X-ray survey. Ten of the new objects are weak-lined stars, with H-alpha equivalent widths less than 10 A. Weak-lined T Tauri stars make up about half of the total population of young stars in the Chamaeleon I cloud, a proportion similar to the Taurus-Auriga cloud. Presented are coordinates, finding charts, and optical and IR photometry of the new emission-line objects.

The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species.

Science.gov (United States)

Hindle, Matthew M; Martin, Sarah F; Noordally, Zeenat B; van Ooijen, Gerben; Barrios-Llerena, Martin E; Simpson, T Ian; Le Bihan, Thierry; Millar, Andrew J

2014-08-02

The current knowledge of eukaryote signalling originates from phenotypically diverse organisms. There is a pressing need to identify conserved signalling components among eukaryotes, which will lead to the transfer of knowledge across kingdoms. Two useful properties of a eukaryote model for signalling are (1) reduced signalling complexity, and (2) conservation of signalling components. The alga Ostreococcus tauri is described as the smallest free-living eukaryote. With less than 8,000 genes, it represents a highly constrained genomic palette. Our survey revealed 133 protein kinases and 34 protein phosphatases (1.7% and 0.4% of the proteome). We conducted phosphoproteomic experiments and constructed domain structures and phylogenies for the catalytic protein-kinases. For each of the major kinases families we review the completeness and divergence of O. tauri representatives in comparison to the well-studied kinomes of the laboratory models Arabidopsis thaliana and Saccharomyces cerevisiae, and of Homo sapiens. Many kinase clades in O. tauri were reduced to a single member, in preference to the loss of family diversity, whereas TKL and ABC1 clades were expanded. We also identified kinases that have been lost in A. thaliana but retained in O. tauri. For three, contrasting eukaryotic pathways - TOR, MAPK, and the circadian clock - we established the subset of conserved components and demonstrate conserved sites of substrate phosphorylation and kinase motifs. We conclude that O. tauri satisfies our two central requirements. Several of its kinases are more closely related to H. sapiens orthologs than S. cerevisiae is to H. sapiens. The greatly reduced kinome of O. tauri is therefore a suitable model for signalling in free-living eukaryotes.

The character and behaviour of circumstellar shells at T Tauri stars

International Nuclear Information System (INIS)

Goetz, W.

1988-01-01

T Tauri stars are extremely young low-mass stars in the pre-main sequence stage. A brief review of investigations made at the Sonneberg observatory concerning the character and the behaviour of circumstellar shells at T Tauri stars is given. They lead to the construction of a shell model on the basis of observational facts. The idea rests upon the causal connection between the gas and dust shell phenomenon and the cosmogonic mass loss of the stars, which is the connecting link between the stars and their shells and which appears in the early phase of the pre-main sequence stage and decreases, like the accompanying shell phenomena, during the evolution of the stars. (author)

Chandra resolves the T Tauri binary system RW Aur

Energy Technology Data Exchange (ETDEWEB)

Skinner, Stephen L. [CASA, University of Colorado, Boulder, CO 80309-0389 (United States); Güdel, Manuel, E-mail: stephen.skinner@colorado.edu, E-mail: manuel.guedel@univie.ac.at [Department of Astrophysics, University of Vienna, Türkenschanzstr. 17, A-1180 Vienna (Austria)

2014-06-20

RW Aur is a multiple T Tauri system consisting of an early-K type primary (A) and a K5 companion (B) at a separation of 1.''4. RW Aur A drives a bipolar optical jet that is well characterized optically. We present results of a sensitive Chandra observation whose primary objective was to search for evidence of soft extended X-ray emission along the jet, as has been seen for a few other nearby T Tauri stars. The binary is clearly resolved by Chandra and both stars are detected as X-ray sources. The X-ray spectra of both stars reveal evidence for cool and hot plasma. Surprisingly, the X-ray luminosity of the less-massive secondary is at least twice that of the primary and is variable. The disparity is attributed to the primary whose X-ray luminosity is at the low end of the range for classical T Tauri stars of similar mass based on established correlations. Deconvolved soft-band images show evidence for slight outward elongation of the source structure of RW Aur A along the blueshifted jet axis inside the central arcsecond. In addition, a faint X-ray emission peak is present on the redshifted axis at an offset of 1.''2 ± 0.''2 from the star. Deprojected jet speeds determined from previous optical studies are too low to explain this faint emission peak as shock-heated jet plasma. Thus, unless flow speeds in the redshifted jet have been underestimated, other mechanisms such as magnetic jet heating may be involved.

JHKL photometry of three Herbig-Haro jet sources and a nebulous T Tauri star

International Nuclear Information System (INIS)

Vrba, F.J.; Rydgren, A.E.; Zak, D.S.; Computer Sciences Corp., Baltimore, MD; Rensselaer Polytechnic Institute, Troy, NY)

1985-01-01

Infrared sources have been detected at the positions of the Herbig-Haro jet sources HH 30, DG Tau B, and Haro 6-5 B in the Taurus dark cloud complex. The colors of these Herbig-Haro jet sources in the 1-4 micron wavelength range are comparable to those of the dustiest T Tauri stars, while the K magnitudes corrected for likely interstellar extinction are actually somewhat fainter than those oftypical T Tauri stars in this region. These observations are consistent with the view that these Herbig-Haro jet sources are low-mass premain-sequence stars. The nebulous T Tauri star Haro 6-5 was also observed and found to show both a large infrared excess and an intrinsic-polarization of about 3 percent in visible light. Thus this star seems to resemble HL Tau and DG Tau, which have been suggested as examples of young stars with circumstellar disks. 17 references

Ionization ratios and elemental abundances in the atmosphere of 68 Tauri

Science.gov (United States)

Aouina, A.; Monier, R.

2017-12-01

We have derived the ionization ratios of twelve elements in the atmosphere of the star 68 Tauri (HD 27962) using an ATLAS9 model atmosphere with 72 layers computed for the effective temperature and surface gravity of the star. We then computed a grid of synthetic spectra generated by SYNSPEC49 based on an ATLAS9 model atmosphere in order to model one high resolution spectrum secured by one of us (RM) with the échelle spectrograph SOPHIE at Observatoire de Haute Provence. We could determine the abundances of several elements in their dominant ionization stage, including those defining the Am phenomenon. We thus provide new abundance determinations for 68 Tauri using updated accurate atomic data retrieved from the NIST database which extend previous abundance works.

Abundâncias químicas de estrelas T Tauri fracas

Science.gov (United States)

Rojas, G. A.; Gregorio-Hetem, J.

2003-08-01

Apresentamos resultados do estudo de 44 estrelas pré-seqüência principal, para as quais buscamos realizar uma classificação espectroscópica e determinar parâmetros estelares e abundâncias químicas. A amostra foi escolhida da seguinte maneira : 21 objetos selecionados a partir de catálogos de objetos jovens, como o Pico dos Dias Survey e o Herbig Bell Catalogue, e 23 objetos selecionados a partir de contrapartidas ópticas de fontes de raios X detectadas pelo satélite ROSAT. Dentre 24 objetos previamente classificados como estrelas T Tauri Fracas, apenas 7 revelaram ser realmente pertencentes à essa classe, sendo os demais objetos T Tauri Clássicas ou estrelas evoluídas da pré-seqüência principal. Esse resultado demonstra que o critério mais utilizado para distinguir as T Tauri Clássicas das T Tauri Fracas, baseado na largura equivelente da emissão Ha, não é suficiente para determinar o estágio evolutivo desses objetos. Para o cálculo de parâmetros estelares e abundâncias, foram escolhidas as estrelas que apresentam características ideais para esse tipo de estudo, como ausência de velamento, baixa velocidade de rotação e espectros com razão sinal-ruído adequada. Os parâmetros estelares como temperatura efetiva e gravidade foram determinados através do equilíbrio de excitação e ionização das linhas de Ferro, e as abundâncias químicas foram calculadas utilizando o método de síntese espectral. Serão apresentados os parâmetros estelares e as abundâncias de Lítio para toda a amostra, e abundâncias de vários elementos quimicos para 7 estrelas estudadas em maior detalhe

Molecular analysis of Rv0679c and Rv0180c genes of Mycobacterium tuberculosis from clinical isolates of pulmonary tuberculosis

Directory of Open Access Journals (Sweden)

L Rupa

2016-01-01

Full Text Available Context: Two novel proteins/genes Rv0679c and Rv0180c of Mycobacterium tuberculosis (MTB H37Rv were classified as a hypothetical membrane and transmembrane proteins which might have a role in the invasion. Molecular analysis of these genes in human clinical isolates of pulmonary tuberculosis (PTB patients was not well characterised. Aims: To assess the molecular diversity of Rv0679c and Rv0180c genes of MTB from clinical isolates of PTB patients. Settings and Design: DNA from 97 clinical isolates was extracted and subjected to amplification using selective primers by polymerase chain reaction (PCR. The PCR product obtained was sequenced commercially. Patients and Methods: Clinical isolates obtained from tuberculosis patients were investigated for polymorphisms in the Rv0679c and Rv0180c genes by PCR and DNA sequencing. Genomic DNA isolated by cetyltrimethylammonium bromide method was used for amplification of genes. Results: Rv0679c gene was highly conserved in 61 out of 65 clinical isolates assessed for sequence homology with wild-type H37Rv gene and was identical using ClustalW. Fifty-five out of 78 (70.5% clinical isolates assessed for Rv0180c were positive for single nucleotide polymorphism (SNP at 258th position where the nucleotide G was replaced with T (G to T. In clinical isolates of untreated cases, the frequency was 54.5% for SNP at 258th position which is low compared to cases undergoing treatment where the frequency was 73.1%. Conclusions: Molecular analysis of Rv0180c in clinical isolates of PTB assessed in this study was the first report, where an SNP at 258th position G to T was identified within the gene. Rv0679c gene was highly conserved (94%, within Indian clinical isolates as compared to reports from other nations.

Identification and analysis of OsttaDSP, a phosphoglucan phosphatase from Ostreococcus tauri.

Directory of Open Access Journals (Sweden)

Julieta B Carrillo

Full Text Available Ostreococcus tauri, the smallest free-living (non-symbiotic eukaryote yet described, is a unicellular green alga of the Prasinophyceae family. It has a very simple cellular organization and presents a unique starch granule and chloroplast. However, its starch metabolism exhibits a complexity comparable to higher plants, with multiple enzyme forms for each metabolic reaction. Glucan phosphatases, a family of enzymes functionally conserved in animals and plants, are essential for normal starch or glycogen degradation in plants and mammals, respectively. Despite the importance of O. tauri microalgae in evolution, there is no information available concerning the enzymes involved in reversible phosphorylation of starch. Here, we report the molecular cloning and heterologous expression of the gene coding for a dual specific phosphatase from O. tauri (OsttaDSP, homologous to Arabidopsis thaliana LSF2. The recombinant enzyme was purified to electrophoretic homogeneity to characterize its oligomeric and kinetic properties accurately. OsttaDSP is a homodimer of 54.5 kDa that binds and dephosphorylates amylopectin. Also, we also determined that residue C162 is involved in catalysis and possibly also in structural stability of the enzyme. Our results could contribute to better understand the role of glucan phosphatases in the metabolism of starch in green algae.

The Curious Case of PDS 11: A Nearby, >10 Myr Old, Classical T Tauri Binary System

Energy Technology Data Exchange (ETDEWEB)

Mathew, Blesson; Manoj, P. [Department of Astronomy and Astrophysics, Tata Institute of Fundamental Research, Colaba, Mumbai 400005 (India); Bhatt, B. C.; Sahu, D. K.; Muneer, S. [Indian Institute of Astrophysics, Koramangala, Bangalore 560034 (India); Maheswar, G., E-mail: blesson.mathew@tifr.res.in [Aryabhatta Research Institute of Observational Sciences (ARIES), Nainital 263002 (India)

2017-05-01

We present results of our study of the PDS 11 binary system, which belongs to a rare class of isolated, high Galactic latitude T Tauri stars. Our spectroscopic analysis reveals that PDS 11 is an M2–M2 binary system with both components showing similar H α emission strengths. Both the components appear to be accreting and are classical T Tauri stars. The lithium doublet Li i  λ 6708, a signature of youth, is present in the spectrum of PDS 11A, but not in PDS 11B. From the application of lithium depletion boundary age-dating method and a comparison with the Li i  λ 6708 equivalent width distribution of moving groups, we estimated an age of 10–15 Myr for PDS 11A. Comparison with pre-main sequence evolutionary models indicates that PDS 11A is a 0.4 M {sub ⊙} T Tauri star at a distance of 114–131 pc. PDS 11 system does not appear to be associated with any known star-forming regions or moving groups. PDS 11 is a new addition, after TWA 30 and LDS 5606, to the interesting class of old, dusty, wide binary classical T Tauri systems in which both components are actively accreting.

EMTP-RV at a glance

Energy Technology Data Exchange (ETDEWEB)

Mahseredjian, J.; Dennetiere, S. [IREQ Headquarters, PQ (Canada); Saad, O.; Khodabakhchian, B. [TransEnergie Technologies, PQ (Canada)

2004-10-01

A new restructured version of an electromagnetic transient program, EMTP-RV, which is a combination of the well-known EMTP and a powerful graphical interface EMTPWorks, is described. EMTP-RV provides a higher level of capabilities in the simulation of large scale electrical networks, making it possible to rapidly design, simulate and view large and complex systems, without the usual large expenditure of engineering and development time, and at the same time allowing more detailed studies on the complex phenomena of power system transients. EMTP-RV has a completely new control system solver, an optional Newton method for finding the simultaneous solution of all control system blocks, and a complex matrix-based steady-state solution, used primarily in automatic initialization of state-variables. The article also describes the highly efficient, intuitive and user-friendly graphical user interface EMTPWorks, which has an open architecture for maximized user configurability from basic user-defined model assemblies to more advanced script-based programming. The EMTP-RV package also includes an efficient data acquisition and processing software, named ScopeView and another visualization function called MPLOT. ScopeView offers multi-page and multi-column capabilities, an advanced built-in function editor, and is especially well adapted for the simultaneous viewing and mathematical post-processing of EMTP-RV. MPLOT, a compiled version of a set of m-files, is well suited for waveform viewing and statistical analysis. A one-week seminar and computer workshop on different aspects of transient system studies and analysis with EMTP-RV is provided twice a year by TransEnergie Technologies. 1 fig.

Kohtujurist Ivo Raudjärv peab etteheiteid maksuametile põhjendatuiks / Ivo Raudjärv ; interv. Edith Kiilmaa

Index Scriptorium Estoniae

Raudjärv, Ivo, 1976-

2003-01-01

Maksumaksja intervjuu juristibüroo Raudjärv & Ko UÜ juhataja Ivo Raudjärvega. Kommentaarid: Lasse Lehis (TÜ finantsõiguse dotsent, Riigikohtu halduskolleegiumi nõunik) "Ivo Raudjärv - asendamatu asjatundja", Aivar Pau (Maksuameti pressiesindaja) "Maksuameti statistika põhineb jõustunud kohtulahenditel", Jüri Allikalt (Jüri Allikaltþi õigusbüroo jurist-maksukonsultant) "Analüütiline Ivo Raudjärv". Lisatud Ivo Raudjärve CV

CURVED WALLS: GRAIN GROWTH, SETTLING, AND COMPOSITION PATTERNS IN T TAURI DISK DUST SUBLIMATION FRONTS

International Nuclear Information System (INIS)

McClure, M. K.; Calvet, N.; Hartmann, L.; Ingleby, L.; D'Alessio, P.; Espaillat, C.; Sargent, B.; Watson, D. M.; Hernández, J.

2013-01-01

The dust sublimation walls of disks around T Tauri stars represent a directly observable cross-section through the disk atmosphere and midplane. Their emission properties can probe the grain size distribution and composition of the innermost regions of the disk, where terrestrial planets form. Here we calculate the inner dust sublimation wall properties for four classical T Tauri stars with a narrow range of spectral types and inclination angles and a wide range of mass accretion rates to determine the extent to which the walls are radially curved. Best fits to the near- and mid-IR excesses are found for curved, two-layer walls in which the lower layer contains larger, hotter, amorphous pyroxene grains with Mg/(Mg+Fe) = 0.6 and the upper layer contains submicron, cooler, mixed amorphous olivine and forsterite grains. As the mass accretion rates decrease from 10 –8 to 10 –10 M ☉ yr –1 , the maximum grain size in the lower layer decreases from ∼3 to 0.5 μm. We attribute this to a decrease in fragmentation and turbulent support for micron-sized grains with decreasing viscous heating. The atmosphere of these disks is depleted of dust with dust-gas mass ratios 1 × 10 –4 of the interstellar medium (ISM) value, while the midplane is enhanced to eight times the ISM value. For all accretion rates, the wall contributes at least half of the flux in the optically thin 10 μm silicate feature. Finally, we find evidence for an iron gradient in the disk, suggestive of that found in our solar system

CURVED WALLS: GRAIN GROWTH, SETTLING, AND COMPOSITION PATTERNS IN T TAURI DISK DUST SUBLIMATION FRONTS

Energy Technology Data Exchange (ETDEWEB)

McClure, M. K.; Calvet, N.; Hartmann, L.; Ingleby, L. [Department of Astronomy, The University of Michigan, 500 Church Street, 830 Dennison Building., Ann Arbor, MI 48109 (United States); D' Alessio, P. [Centro de Radioastronomía y Astrofísica, Universidad Nacional Autónoma de México, 58089 Morelia, Michoacán (Mexico); Espaillat, C. [Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Sargent, B. [Center for Imaging Science and Laboratory for Multiwavelength Astrophysics, Rochester Institute of Technology, 54 Lomb Memorial Drive, Rochester, NY 14623 (United States); Watson, D. M. [Department of Physics and Astronomy, University of Rochester, Rochester, NY 14627 (United States); Hernández, J., E-mail: melisma@umich.edu, E-mail: ncalvet@umich.edu, E-mail: lhartm@umich.edu, E-mail: lingleby@umich.edu, E-mail: p.dalessio@astrosmo.unam.mx, E-mail: cespaillat@cfa.harvard.edu, E-mail: baspci@rit.edu, E-mail: dmw@pas.rochester.edu, E-mail: hernandj@cida.ve [Centro de Investigaciones de Astronomía (CIDA), Mérida 5101-A (Venezuela, Bolivarian Republic of)

2013-10-01

The dust sublimation walls of disks around T Tauri stars represent a directly observable cross-section through the disk atmosphere and midplane. Their emission properties can probe the grain size distribution and composition of the innermost regions of the disk, where terrestrial planets form. Here we calculate the inner dust sublimation wall properties for four classical T Tauri stars with a narrow range of spectral types and inclination angles and a wide range of mass accretion rates to determine the extent to which the walls are radially curved. Best fits to the near- and mid-IR excesses are found for curved, two-layer walls in which the lower layer contains larger, hotter, amorphous pyroxene grains with Mg/(Mg+Fe) = 0.6 and the upper layer contains submicron, cooler, mixed amorphous olivine and forsterite grains. As the mass accretion rates decrease from 10{sup –8} to 10{sup –10} M{sub ☉} yr{sup –1}, the maximum grain size in the lower layer decreases from ∼3 to 0.5 μm. We attribute this to a decrease in fragmentation and turbulent support for micron-sized grains with decreasing viscous heating. The atmosphere of these disks is depleted of dust with dust-gas mass ratios 1 × 10{sup –4} of the interstellar medium (ISM) value, while the midplane is enhanced to eight times the ISM value. For all accretion rates, the wall contributes at least half of the flux in the optically thin 10 μm silicate feature. Finally, we find evidence for an iron gradient in the disk, suggestive of that found in our solar system.

Residual Gas and Dust around Transition Objects and Weak T Tauri Stars

Energy Technology Data Exchange (ETDEWEB)

Doppmann, Greg W. [W. M. Keck Observatory, 65-1120 Mamalahoa Hwy., Kamuela, HI 96743 (United States); Najita, Joan R. [National Optical Astronomy Observatory, 950 N. Cherry Avenue, Tucson, AZ 85719 (United States); Carr, John S., E-mail: gdoppmann@keck.hawaii.edu, E-mail: najita@noao.edu, E-mail: carr@nrl.navy.mil [Naval Research Laboratory, Code 7213, Washington, DC 20375 (United States)

2017-02-20

Residual gas in disks around young stars can spin down stars, circularize the orbits of terrestrial planets, and whisk away the dusty debris that is expected to serve as a signpost of terrestrial planet formation. We have carried out a sensitive search for residual gas and dust in the terrestrial planet region surrounding young stars ranging in age from a few to ∼10 Myr. Using high-resolution 4.7 μ m spectra of transition objects (TOs) and weak T Tauri stars, we searched for weak continuum excesses and CO fundamental emission, after making a careful correction for the stellar contribution to the observed spectrum. We find that the CO emission from TOs is weaker and located farther from the star than CO emission from nontransition T Tauri stars with similar stellar accretion rates. The difference is possibly the result of chemical and/or dynamical effects (i.e., a low CO abundance or close-in low-mass planets). The weak T Tauri stars show no CO fundamental emission down to low flux levels (5 × 10{sup −20} to 10{sup −18} W m{sup −2}). We illustrate how our results can be used to constrain the residual disk gas content in these systems and discuss their potential implications for star and planet formation.

Measuring the rotation periods of 4-10 Myr T-Tauri stars in the Orion OB1 association

Science.gov (United States)

Karim, Md Tanveer; Stassun, Keivan; Briceno, Cesar; Vivas, Kathy; Raetz, Stefanie; Calvet, Nuria; Mateu, Cecilia; Downes, Juan Jose; Hernandez, Jesus; Neuhäuser, Ralph; Mugrauer, Markus; Takahashi, Hidenori; Tachihara, Kengo; Chini, Rolf; YETI

2016-01-01

Most existing studies of young stellar populations have focused on the youngest (Investigaciones de Astronomía-Quest Equatorial Survey Team (CIDA-QUEST), the Young Exoplanet Transit Initiative (YETI) and from a Kitt Peak National Observatory (KPNO) campaign. We investigated stellar rotation periods according to the type of stars (Classical or Weak-lined T-Tauri stars) and their locations, to look for population-wide trends. We detected 563 periodic variables and 1411 non-periodic variables by investigating the light curves of these stars. We find that ~ 30% of Weak-line T-Tauri stars (WTTS) and ~ 20% of Classical T-Tauri stars (CTTS) are periodic. Though we did not find any noticeable difference in rotation period between CTTS and WTTS, our study does show a change in the overall rotation periods of stars 4-10 Myr old, consistent with predictions of angular momentum evolution models, an important constraint for theoretical models for an age range for which no similar data existed.

The Mysterious Dimmings of the T Tauri Star V1334 Tau

International Nuclear Information System (INIS)

Rodriguez, Joseph E.; Zhou, George; Cargile, Phillip A.; Relles, Howard M.; Latham, David W.; Eastman, Jason; Bieryla, Allyson; Esquerdo, Gilbert A.; Berlind, Perry; Calkins, Michael L.; Vanderburg, Andrew; Stevens, Daniel J.; Osborn, Hugh P.; Shappee, Benjamin J.; Reed, Phillip A.; Lund, Michael B.; Stassun, Keivan G.; Gaidos, Eric; Ansdell, Megan; Siverd, Robert J.

2017-01-01

We present the discovery of two extended ∼0.12 mag dimming events of the weak-lined T Tauri star V1334. The start of the first event was missed but came to an end in late 2003, and the second began in 2009 February, and continues as of 2016 November. Since the egress of the current event has not yet been observed, it suggests a period of >13 years if this event is periodic. Spectroscopic observations suggest the presence of a small inner disk, although the spectral energy distribution shows no infrared excess. We explore the possibility that the dimming events are caused by an orbiting body (e.g., a disk warp or dust trap), enhanced disk winds, hydrodynamical fluctuations of the inner disk, or a significant increase in the magnetic field flux at the surface of the star. We also find a ∼0.32 day periodic photometric signal that persists throughout the 2009 dimming which appears to not be due to ellipsoidal variations from a close stellar companion. High-precision photometric observations of V1334 Tau during K2 campaign 13, combined with simultaneous photometric and spectroscopic observations from the ground, will provide crucial information about the photometric variability and its origin.

The Mysterious Dimmings of the T Tauri Star V1334 Tau

Energy Technology Data Exchange (ETDEWEB)

Rodriguez, Joseph E.; Zhou, George; Cargile, Phillip A.; Relles, Howard M.; Latham, David W.; Eastman, Jason; Bieryla, Allyson; Esquerdo, Gilbert A.; Berlind, Perry; Calkins, Michael L.; Vanderburg, Andrew [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Stevens, Daniel J. [Department of Astronomy, The Ohio State University, Columbus, OH 43210 (United States); Osborn, Hugh P. [Department of Physics, University of Warwick, Gibbet Hill Road, Coventry, CV4 7AL (United Kingdom); Shappee, Benjamin J. [Carnegie Observatories, 813 Santa Barbara Street, Pasadena, CA 91101 (United States); Reed, Phillip A. [Department of Physical Sciences, Kutztown University, Kutztown, PA 19530 (United States); Lund, Michael B.; Stassun, Keivan G. [Department of Physics and Astronomy, Vanderbilt University, 6301 Stevenson Center, Nashville, TN 37235 (United States); Gaidos, Eric [Department of Geology and Geophysics, University of Hawai‘i at Mnoa, Honolulu, HI 96822 (United States); Ansdell, Megan [Institute for Astronomy, University of Hawai‘i at Manoa, Honolulu, HI 96822 (United States); Siverd, Robert J. [Las Cumbres Observatory Global Telescope Network, 6740 Cortona Drive, Suite 102, Santa Barbara, CA 93117 (United States); and others

2017-02-20

We present the discovery of two extended ∼0.12 mag dimming events of the weak-lined T Tauri star V1334. The start of the first event was missed but came to an end in late 2003, and the second began in 2009 February, and continues as of 2016 November. Since the egress of the current event has not yet been observed, it suggests a period of >13 years if this event is periodic. Spectroscopic observations suggest the presence of a small inner disk, although the spectral energy distribution shows no infrared excess. We explore the possibility that the dimming events are caused by an orbiting body (e.g., a disk warp or dust trap), enhanced disk winds, hydrodynamical fluctuations of the inner disk, or a significant increase in the magnetic field flux at the surface of the star. We also find a ∼0.32 day periodic photometric signal that persists throughout the 2009 dimming which appears to not be due to ellipsoidal variations from a close stellar companion. High-precision photometric observations of V1334 Tau during K2 campaign 13, combined with simultaneous photometric and spectroscopic observations from the ground, will provide crucial information about the photometric variability and its origin.

Analysis on Dynamic Transmission Accuracy for RV Reducer

Directory of Open Access Journals (Sweden)

Zhang Fengshou

2017-01-01

Full Text Available By taking rotate vector (RV reducer as the research object, the factors affecting the transmission accuracy are studied, including the machining errors of the main parts, assembly errors, clearance, micro-displacement, gear mesh stiffness and damping, bearing stiffness. Based on Newton second law, the transmission error mathematical model of RV reducer is set up. Then, the RV reducer transmission error curve is achieved by solving the mathematical model using the Runge-Kutta methods under the combined action of various error factors. Through the analysis of RV reducer transmission test, it can be found that there are similar variation trend and frequency components compared the theoretical research and experimental result. The presented method is useful to the research on dynamic transmission accuracy of RV reducer, and also applies to research the transmission accuracy of other cycloid drive systems.

Flat spectrum T Tauri stars: The case for infall

Science.gov (United States)

Calvet, Nuria; Hartmann, Lee; Kenyon, S. J.; Whitney, B. A.

1994-01-01

We show that the mid- to far-infrared fluxes of 'flat spectrum' T Tauri stars can be explained by radiative equilibrium emission from infalling dusty envelopes. Infall eliminates the need for accretion disks with non-standard temperature distributions. The simplicity and power of this explanantion indicates that models employing 'active' disks, in which the temperature distribution is a parameterized power law, should be invoked with caution. Infall also naturally explains the scattered light nebulae detected around many flat spectrum sources. To match the observed spectra, material must fall onto a disk rather than the central star, as expected for collapse of a rotating molecular cloud. It may be necessary to invoke cavities in the envelopes to explain the strength of optical and near-infrared emission; these cavities could be produced by the powerful bipolar outflows commonly observed from young stars. If viewed along the cavity, a source may be lightly extincted at visual wavelengths, while still accreting substantial amounts of material from the envelope. Infall may also be needed to explain the infrared-bright companions of many optical T Tauri stars. This picture suggests that many of the flat spectrum sources are 'protostars'-young stellar objects surrounded by dust infalling envelopes of substantial mass.

High-resolution TNG spectra of T Tauri stars. Near-IR GIANO observations of the young variables XZ Tauri and DR Tauri

Science.gov (United States)

Antoniucci, S.; Nisini, B.; Biazzo, K.; Giannini, T.; Lorenzetti, D.; Sanna, N.; Harutyunyan, A.; Origlia, L.; Oliva, E.

2017-10-01

Aims: We aim to characterise the star-disk interaction region in T Tauri stars that show photometric and spectroscopic variability. Methods: We used the GIANO instrument at the Telescopio Nazionale Galileo to obtain near-infrared high-resolution spectra (R 50 000) of XZ Tau and DR Tau, which are two actively accreting T Tauri stars classified as EXors. Equivalent widths and profiles of the observed features are used to derive information on the properties of the inner disk, the accretion columns, and the winds. Results: Both sources display composite H I line profiles, where contributions from both accreting gas and high-velocity winds can be recognised. These lines are progressively more symmetric and narrower with increasing upper energy which may be interpreted in terms of two components with different decrements or imputed to self-absorption effects. XZ Tau is observed in a relatively high state of activity with respect to literature observations. The variation of the He I 1.08 μm line blue-shifted absorption, in particular, suggests that the inner wind has undergone a dramatic change in its velocity structure, connected with a recent accretion event. DR Tau has a more stable wind as its He I 1.08 μm absorption does not show variations with time in spite of strong variability of the emission component. The IR veiling in the two sources can be interpreted as due to blackbody emission at temperatures of 1600 K and 2300 K for XZ Tau and DR Tau, respectively, with emitting areas 30 times larger than the central star. While for XZ Tau these conditions are consistent with emission from the inner rim of the dusty disk, the fairly high temperature inferred for DR Tau might suggest that its veiling originates from a thick gaseous disk located within the dust sublimation radius. Strong and broad metallic lines, mainly from C I and Fe I, are detected in XZ Tau, similar to those observed in other EXor sources during burst phases. At variance, DR Tau shows weaker and

T Tauri stars - Wild as dust

International Nuclear Information System (INIS)

Bertout, C.

1989-01-01

T Tauri stars (TTSs), their surroundings, and their common evolution toward the main sequence are discussed. The photospheric properties of TTSs and their solar-type outer atmospheres, recent evidence for circumstellar disks around classical TTSs (CTTSs), and CTTS mass outflows are examined. TTSs are depicted as complex systems whose properties depend mostly on the initial conditions of star formation and on their rotation rates, which appear to control the magnetodynamic activity in the stars. The most exotic traits of CTTSs are primarily due to the disk and its interaction with the star, and the properties of weak-line TTSs (WTTSs) are mainly manifestations of the enhanced solar-type magnetic activity expected from their rotation rates. CTTSs are expected to become WTTSs when their disks dissipate. 217 refs

Local protoplanetary disk ionisation by T Tauri star energetic particles

Science.gov (United States)

Fraschetti, F.; Drake, J.; Cohen, O.; Garraffo, C.

2017-10-01

The evolution of protoplanetary disks is believed to be driven largely by viscosity. The ionization of the disk that gives rise to viscosity is caused by X-rays from the central star or by energetic particles released by shock waves travelling into the circumstellar medium. We have performed test-particle numerical simulations of GeV-scale protons traversing a realistic magnetised wind of a young solar mass star with a superposed small-scale turbulence. The large-scale field is generated via an MHD model of a T Tauri wind, whereas the isotropic (Kolmogorov power spectrum) turbulent component is synthesised along the particles' trajectories. We have combined Chandra observations of T Tauri flares with solar flare scaling for describing the energetic particle spectrum. In contrast with previous models, we find that the disk ionization is dominated by X-rays except within narrow regions where the energetic particles are channelled onto the disk by the strongly tangled and turbulent field lines; the radial thickness of such regions broadens with the distance from the central star (5 stellar radii or more). In those regions, the disk ionization due to energetic particles can locally dominate the stellar X-rays, arguably, out to large distances (10, 100 AU) from the star.

Intrinsic polarization changes and the H-alpha and CA II emission features in T-Tauri stars

Science.gov (United States)

Svatos, J.; Solc, M.

1981-12-01

On the basis of the correlation between polarization and emission features observed in certain T-Tauri stars, it is concluded that flaring effects associated with UV and/or X-ray irradiation and with increased magnetic field are responsible for the intrinsic polarization changes in T-Tauri stars. The correlation between emission Ca II lines and polarization degree both in Miras and T-Tau stars is thought to support the contention that the intrinsic polarization changes are due to the irradiation of silicate-like grains. In some T-Tau stars the increase in the magnetic field can be the principal agent causing the polarization increase due to the enhanced orientation of elongated grains.

A radio survey of weak T Tauri stars in Taurus-Auriga

International Nuclear Information System (INIS)

O'neal, D.; Feigelson, E.D.; Mathieu, R.D.; Myers, P.C.

1990-01-01

A multi-epoch 5 GHz survey of candidate or confirmed weak T Tauri stars in the Taurus-Auriga molecular cloud complex was conducted with the Very Large Array. The stars were chosen from those having detectable X-ray or chromospheric emission, and weak-emission-line pre-main-sequence stars found by other means. Snapshots of 99 VLA fields containing 119 candidate stars were obtained with a sensitivity of 0.7 mJy; most fields were observed on two or three dates. Nine radio sources coincident with cataloged stars were found. One may be an RS CVn binary system; the other eight are pre-main-sequence stars. Three of the detected stars - HD 283447, V410 Tau, and FK X-ray 1 - were previously known radio sources. Five new detections are Herbig's Anon 1, Hubble 4, HDE 283572, Elias 12, and HK Tau/c. At least five of the sources are variable, and no linear or circular polarization was found. Several lines of evidence suggest that the radio-detected weak T Tauri stars are quite young, perhaps younger on average than nondetected stars. 54 refs

THE SPITZER c2d SURVEY OF WEAK-LINE T TAURI STARS. III. THE TRANSITION FROM PRIMORDIAL DISKS TO DEBRIS DISKS

International Nuclear Information System (INIS)

Wahhaj, Zahed; Cieza, Lucas; Koerner, David W.; Case, April; Stapelfeldt, Karl R.; Chapman, Nicholas; Padgett, Deborah L.; Brooke, Tim; Keller, James R.; MerIn, Bruno; Evans, Neal J.; Harvey, Paul; Sargent, Anneila; Van Dishoeck, Ewine F.; Allen, Lori; Blake, Geoff; Mundy, Lee; Myers, Philip C.

2010-01-01

We present 3.6 to 70 μm Spitzer photometry of 154 weak-line T Tauri stars (WTTSs) in the Chamaeleon, Lupus, Ophiuchus, and Taurus star formation regions, all of which are within 200 pc of the Sun. For a comparative study, we also include 33 classical T Tauri stars which are located in the same star-forming regions. Spitzer sensitivities allow us to robustly detect the photosphere in the IRAC bands (3.6 to 8 μm) and the 24 μm MIPS band. In the 70 μm MIPS band, we are able to detect dust emission brighter than roughly 40 times the photosphere. These observations represent the most sensitive WTTSs survey in the mid- to far-infrared to date and reveal the frequency of outer disks (r = 3-50 AU) around WTTSs. The 70 μm photometry for half the c2d WTTSs sample (the on-cloud objects), which were not included in the earlier papers in this series, those of Padgett et al. and Cieza et al., are presented here for the first time. We find a disk frequency of 19% for on-cloud WTTSs, but just 5% for off-cloud WTTSs, similar to the value reported in the earlier works. WTTSs exhibit spectral energy distributions that are quite diverse, spanning the range from optically thick to optically thin disks. Most disks become more tenuous than L disk /L * = 2 x 10 -3 in 2 Myr and more tenuous than L disk /L * = 5 x 10 -4 in 4 Myr.

Herbig-Haro objects and T Tauri nebulae

International Nuclear Information System (INIS)

Boehm, K.H.

1975-01-01

The empirical information about Herbig-Haro objects and T Tauri nebulae is summarized. We emphasize especially the importance of the spectroscopic and spectrophotometric data. Relative and (preliminary) absolute emission line fluxes are presented and discussed. We consider the radial velocity data and the detection of a faint blue continuum in Herbig-Haro objects as important from a theoretical point of view. The direct interpretation of the emission line spectra is simple and leads to values of the electron temperature, electron density, density inhomogeneities, filling factors, degree of ionization and chemical abundances. The relevant procedures are discussed in some detail. The possible role of the Herbig-Haro objects in the early phases of stellar evolution is discussed. (orig./BJ) [de

The wind and the magnetospheric accretion onto the T Tauri star S Coronae Australis at sub-au resolution

Science.gov (United States)

Gravity Collaboration; Garcia Lopez, R.; Perraut, K.; Caratti O Garatti, A.; Lazareff, B.; Sanchez-Bermudez, J.; Benisty, M.; Dougados, C.; Labadie, L.; Brandner, W.; Garcia, P. J. V.; Henning, Th.; Ray, T. P.; Abuter, R.; Amorim, A.; Anugu, N.; Berger, J. P.; Bonnet, H.; Buron, A.; Caselli, P.; Clénet, Y.; Coudé Du Foresto, V.; de Wit, W.; Deen, C.; Delplancke-Ströbele, F.; Dexter, J.; Eckart, A.; Eisenhauer, F.; Garcia Dabo, C. E.; Gendron, E.; Genzel, R.; Gillessen, S.; Haubois, X.; Haug, M.; Haussmann, F.; Hippler, S.; Hubert, Z.; Hummel, C. A.; Horrobin, M.; Jocou, L.; Kellner, S.; Kervella, P.; Kulas, M.; Kolb, J.; Lacour, S.; Le Bouquin, J.-B.; Léna, P.; Lippa, M.; Mérand, A.; Müller, E.; Ott, T.; Panduro, J.; Paumard, T.; Perrin, G.; Pfuhl, O.; Ramirez, A.; Rau, C.; Rohloff, R.-R.; Rousset, G.; Scheithauer, S.; Schöller, M.; Straubmeier, C.; Sturm, E.; Thi, W. F.; van Dishoeck, E.; Vincent, F.; Waisberg, I.; Wank, I.; Wieprecht, E.; Wiest, M.; Wiezorrek, E.; Woillez, J.; Yazici, S.; Zins, G.

2017-12-01

Aims: To investigate the inner regions of protoplanetary discs, we performed near-infrared interferometric observations of the classical T Tauri binary system S CrA. Methods: We present the first VLTI-GRAVITY high spectral resolution (R 4000) observations of a classical T Tauri binary, S CrA (composed of S CrA N and S CrA S and separated by 1.̋4), combining the four 8m telescopes in dual-field mode. Results: Our observations in the near-infrared K-band continuum reveal a disc around each binary component, with similar half-flux radii of about 0.1 au at d 130 pc, inclinations (i = 28 ± 3° and i = 22 ± 6°), and position angles (PA = 0°± 6° and PA = –2°± 12°), suggesting that they formed from the fragmentation of a common disc. The S CrA N spectrum shows bright He I and Brγ line emission exhibiting inverse P Cygni profiles, typically associated with infalling gas. The continuum-compensated Brγ line visibilities of S CrA N show the presence of a compact Brγ emitting region whose radius is about 0.06 au, which is twice as big as the truncation radius. This component is mostly tracing a wind. Moreover, a slight radius change between the blue- and red-shifted Brγ line components is marginally detected. Conclusions: The presence of an inverse P Cygni profile in the He I and Brγ lines, along with the tentative detection of a slightly larger size of the blue-shifted Brγ line component, hint at the simultaneous presence of a wind and magnetospheric accretion in S CrA N.

Chemistry in T Tauri winds

Energy Technology Data Exchange (ETDEWEB)

Rawlings, J M.C.; Williams, D A; Canto, J

1988-02-15

The chemistry occurring in the winds of T Tauri stars is investigated. On the assumption that the wind is dust-free, then routes to H/sub 2/ are inhibited under the conditions in the wind, and subsequent chemistry does not produce substantial molecular abundances. The major losses to the chemical network lie in the geometrical dilution and collisional dissociation rather than in chemical destruction and photodissociation. Mass loading of the wind with dust and H/sub 2/ may, however, occur. This stimulates the chemistry and may in some circumstances lead to a conversion of approx.1-10 per cent of carbon into CO. This gives a column density of CO which is marginally detectable. A positive detection of CO at high wind velocities would imply that the winds must be cool and that mixing of molecular material from a disc, which may play a role in collimating the wind, or the remnants of a disc, must occur.

Transcriptional analysis of genetic region RvD1 of Mycobacterium bovis

Directory of Open Access Journals (Sweden)

Víctor Manuel Tibatá R.

2004-07-01

Full Text Available Mycobacterium bovis, shares 99.9% of genomic identity with M. tuberculosis, M. africanum and M. microti. Within this 0.1 % of difference, there are two genetic regions characteristics of M. bovis that are deleted in M. tuberculo­sis H37Rv: RvD1 and RvD2. According to bioinformatic analysis, these regions contain Open Reading Frames (ORFs. With the purpose of determining if the RvD1 region transcribes the ORFs predicted by bioinformatics (ORF1, ORF2 and Rv2024; total RNA was extracted from a culture of M. bovis BCG Pasteur, at different time points along the growth curve. The RNA samples were analyzed by Real Time Reverse Transcription - Poly-merase Chain Reaction (RTq-PCR. The findings show that ORF1, ORF2 and Rv2024, were transcribed consti-tutively, something that has not been reported previously. These results are a first step in order to determine the function of M. bovis RvD1 region, its possible role in pathogenesis and its interaction with both cattle and humans. Key words: Mycobacterium bovis, BCG, RNA, Real Time, RT-PCR, RvD1

Infection with koala retrovirus subgroup B (KoRV-B), but not KoRV-A, is associated with chlamydial disease in free-ranging koalas (Phascolarctos cinereus).

Science.gov (United States)

Waugh, Courtney A; Hanger, Jonathan; Loader, Joanne; King, Andrew; Hobbs, Matthew; Johnson, Rebecca; Timms, Peter

2017-03-09

The virulence of chlamydial infection in wild koalas is highly variable between individuals. Some koalas can be infected (PCR positive) with Chlamydia for long periods but remain asymptomatic, whereas others develop clinical disease. Chlamydia in the koala has traditionally been studied without regard to coinfection with other pathogens, although koalas are usually subject to infection with koala retrovirus (KoRV). Retroviruses can be immunosuppressive, and there is evidence of an immunosuppressive effect of KoRV in vitro. Originally thought to be a single endogenous strain, a new, potentially more virulent exogenous variant (KoRV-B) was recently reported. We hypothesized that KoRV-B might significantly alter chlamydial disease outcomes in koalas, presumably via immunosuppression. By studying sub-groups of Chlamydia and KoRV infected koalas in the wild, we found that neither total KoRV load (either viraemia or proviral copies per genome), nor chlamydial infection level or strain type, was significantly associated with chlamydial disease risk. However, PCR positivity with KoRV-B was significantly associated with chlamydial disease in koalas (p = 0.02961). This represents an example of a recently evolved virus variant that may be predisposing its host (the koala) to overt clinical disease when co-infected with an otherwise asymptomatic bacterial pathogen (Chlamydia).

THE HERSCHEL DIGIT SURVEY OF WEAK-LINE T TAURI STARS: IMPLICATIONS FOR DISK EVOLUTION AND DISSIPATION

International Nuclear Information System (INIS)

Cieza, Lucas A.; Olofsson, Johan; Henning, Thomas; Harvey, Paul M.; Evans, Neal J. II; Najita, Joan; Merín, Bruno; Liebhart, Armin; Güdel, Manuel; Augereau, Jean-Charles; Pinte, Christophe

2013-01-01

As part of the 'Dust, Ice, and Gas In Time (DIGIT)' Herschel Open Time Key Program, we present Herschel photometry (at 70, 160, 250, 350, and 500 μm) of 31 weak-line T Tauri star (WTTS) candidates in order to investigate the evolutionary status of their circumstellar disks. Of the stars in our sample, 13 had circumstellar disks previously known from infrared observations at shorter wavelengths, while 18 of them had no previous evidence for a disk. We detect a total of 15 disks as all previously known disks are detected at one or more Herschel wavelengths and two additional disks are identified for the first time. The spectral energy distributions (SEDs) of our targets seem to trace the dissipation of the primordial disk and the transition to the debris disk regime. Of the 15 disks, 7 appear to be optically thick primordial disks, including 2 objects with SEDs indistinguishable from those of typical Classical T Tauri stars, 4 objects that have significant deficit of excess emission at all IR wavelengths, and 1 'pre-transitional' object with a known gap in the disk. Despite their previous WTTS classification, we find that the seven targets in our sample with optically thick disks show evidence for accretion. The remaining eight disks have weaker IR excesses similar to those of optically thin debris disks. Six of them are warm and show significant 24 μm Spitzer excesses, while the last two are newly identified cold debris-like disks with photospheric 24 μm fluxes, but significant excess emission at longer wavelengths. The Herschel photometry also places strong constraints on the non-detections, where systems with F 70 /F 70,* ∼> 5-15 and L disk /L * ∼> 10 –3 to 10 –4 can be ruled out. We present preliminary models for both the optically thick and optically thin disks and discuss our results in the context of the evolution and dissipation of circumstellar disks.

THE HERSCHEL DIGIT SURVEY OF WEAK-LINE T TAURI STARS: IMPLICATIONS FOR DISK EVOLUTION AND DISSIPATION

Energy Technology Data Exchange (ETDEWEB)

Cieza, Lucas A. [Institute for Astronomy, University of Hawaii at Manoa, Honolulu, HI 96822 (United States); Olofsson, Johan; Henning, Thomas [Max Planck Institute fuer Astronomie, Koenigstuhl 17, D-69117 Heidelberg (Germany); Harvey, Paul M.; Evans, Neal J. II [Department of Astronomy, University of Texas at Austin, 2515 Speedway, Stop C1400, Austin, TX 78712-1205 (United States); Najita, Joan [National Optical Astronomy Observatory, 950 N. Cherry Avenue, Tucson, AZ 86719 (United States); Merin, Bruno [Herschel Science Centre, European Space Astronomy Centre, ESA, P.O. Box 78, E-28691 Villanueva de la Canada, Madrid (Spain); Liebhart, Armin; Guedel, Manuel [Department of Astronomy, University of Vienna, Tuerkenschanzstr. 17, A-1180 Vienna (Austria); Augereau, Jean-Charles; Pinte, Christophe, E-mail: lcieza@ifa.hawaii.edu [UJF-Grenoble 1/CNRS-INSU, Institut de Planetologie et d' Astrophysique (IPAG) UMR 5274, BP 53, F-38041 Grenoble cedex 9 (France)

2013-01-10

As part of the 'Dust, Ice, and Gas In Time (DIGIT)' Herschel Open Time Key Program, we present Herschel photometry (at 70, 160, 250, 350, and 500 {mu}m) of 31 weak-line T Tauri star (WTTS) candidates in order to investigate the evolutionary status of their circumstellar disks. Of the stars in our sample, 13 had circumstellar disks previously known from infrared observations at shorter wavelengths, while 18 of them had no previous evidence for a disk. We detect a total of 15 disks as all previously known disks are detected at one or more Herschel wavelengths and two additional disks are identified for the first time. The spectral energy distributions (SEDs) of our targets seem to trace the dissipation of the primordial disk and the transition to the debris disk regime. Of the 15 disks, 7 appear to be optically thick primordial disks, including 2 objects with SEDs indistinguishable from those of typical Classical T Tauri stars, 4 objects that have significant deficit of excess emission at all IR wavelengths, and 1 'pre-transitional' object with a known gap in the disk. Despite their previous WTTS classification, we find that the seven targets in our sample with optically thick disks show evidence for accretion. The remaining eight disks have weaker IR excesses similar to those of optically thin debris disks. Six of them are warm and show significant 24 {mu}m Spitzer excesses, while the last two are newly identified cold debris-like disks with photospheric 24 {mu}m fluxes, but significant excess emission at longer wavelengths. The Herschel photometry also places strong constraints on the non-detections, where systems with F {sub 70}/F {sub 70,*} {approx}> 5-15 and L {sub disk}/L {sub *} {approx}> 10{sup -3} to 10{sup -4} can be ruled out. We present preliminary models for both the optically thick and optically thin disks and discuss our results in the context of the evolution and dissipation of circumstellar disks.

RV-Typer: A Web Server for Typing of Rhinoviruses Using Alignment-Free Approach.

Directory of Open Access Journals (Sweden)

Pandurang S Kolekar

Full Text Available Rhinoviruses (RV are increasingly being reported to cause mild to severe infections of respiratory tract in humans. RV are antigenically the most diverse species of the genus Enterovirus and family Picornaviridae. There are three species of RV (RV-A, -B and -C, with 80, 32 and 55 serotypes/types, respectively. Antigenic variation is the main limiting factor for development of a cross-protective vaccine against RV.Serotyping of Rhinoviruses is carried out using cross-neutralization assays in cell culture. However, these assays become laborious and time-consuming for the large number of strains. Alternatively, serotyping of RV is carried out by alignment-based phylogeny of both protein and nucleotide sequences of VP1. However, serotyping of RV based on alignment-based phylogeny is a multi-step process, which needs to be repeated every time a new isolate is sequenced. In view of the growing need for serotyping of RV, an alignment-free method based on "return time distribution" (RTD of amino acid residues in VP1 protein has been developed and implemented in the form of a web server titled RV-Typer. RV-Typer accepts nucleotide or protein sequences as an input and computes return times of di-peptides (k = 2 to assign serotypes. The RV-Typer performs with 100% sensitivity and specificity. It is significantly faster than alignment-based methods. The web server is available at http://bioinfo.net.in/RV-Typer/home.html.

Rotavirus shedding following administration of RV3-BB human neonatal rotavirus vaccine.

Science.gov (United States)

Cowley, Daniel; Boniface, Karen; Bogdanovic-Sakran, Nada; Kirkwood, Carl D; Bines, Julie E

2017-08-03

The RV3-BB human neonatal rotavirus vaccine aims to provide protection from severe rotavirus disease from birth. A phase IIa safety and immunogenicity trial was undertaken in Dunedin, New Zealand between January 2012 and April 2014. Healthy, full-term (≥ 36 weeks gestation) babies, who were 0-5 d old were randomly assigned (1:1:1) to receive 3 doses of oral RV3-BB vaccine with the first dose given at 0-5 d after birth (neonatal schedule), or the first dose given at about 8 weeks after birth (infant schedule), or to receive placebo (placebo schedule). Vaccine take (serum immune response or stool shedding of vaccine virus after any dose) was detected after 3 doses of RV3-BB vaccine in >90% of participants when the first dose was administered in the neonatal and infant schedules. The aim of the current study was to characterize RV3-BB shedding and virus replication following administration of RV3-BB in a neonatal and infant vaccination schedule. Shedding was defined as detection of rotavirus by VP6 reverse transcription polymerase chain reaction (RT-PCR) in stool on days 3-7 after administration of RV3-BB. Shedding of rotavirus was highest following vaccination at 8 weeks of age in both neonatal and infant schedules (19/30 and 17/27, respectively). Rotavirus was detected in stool on days 3-7, after at least one dose of RV3-BB, in 70% (21/30) of neonate, 78% (21/27) of infant and 3% (1/32) placebo participants. In participants who shed RV3-BB, rotavirus was detectable in stool on day 1 following RV3-BB administration and remained positive until day 4-5 after administration. The distinct pattern of RV3-BB stool viral load demonstrated using a NSP3 quantitative qRT-PCR in participants who shed RV3-BB, suggests that detection of RV3-BB at day 3-7 was the result of replication rather than passage through the gastrointestinal tract.

1993 recreational vehicle (RV) park census in Beatty and Pahrump, Nevada

International Nuclear Information System (INIS)

Levy, L.E.; Housel, M.D.

1994-01-01

This paper reports on the second annual study of seasonal nonpermanent residents in the towns of Beatty and Pahrump in southern Nye County, Nevada, situs county of the Yucca Mountain Site Characterization Project. The study used a census of recreational vehicle (RV) park managers to enumerate and characterize in demographic terms nonpermanent residents staying in RV parks. The questionnaire sought information from RV park managers which ordinarily would come from a household survey. The main objective was to study open-quotes snowbirdsclose quotes, the households of older couples who stay for a month or more each winter. The findings suggest that snowbirds are a majority of the seasonal influx of nonpermanent residents to RV parks in Pahrump. In contrast, a group called open-quotes seasonal travelersclose quotes, similar demographically but who stay less than a month, dominate the seasonal nonpermanent population in Beatty's RV parks. The study also tentatively identified the seasonality of nonpermanent resident occupancy. Because only RV parks were contacted, the study left unanswered the question of how many snowbirds live in other types of accommodations in Beatty and Pahrump

X-ray sources in stars formation areas: T Tauri stars and proto-stars in the rho Ophiuchi dark cloud

International Nuclear Information System (INIS)

Grosso, Nicolas

1999-01-01

This thesis studies from large to small scales, X-ray sources in the rho Ophiuchi dark cloud. After some background on the formation of the low-mass young stars (Chapter 1), Chapter 2 takes an interest in the T Tauri star population. Chapter 3 tackles the search of the magnetic activity at the younger stage of protostar, presenting a powerful X-ray emission from an IR protostar, called YLW15, during a flare, and a quasi-periodic flare of the same source; as well as a new detection of another IR protostar in the ROSAT archives. It ends with a review of protostar detections. Some IR protostar flares show a very long increasing phase. Chapter 4 links this behaviour with a modulation by the central star rotation. The standard model of jet emission assumes that the central star rotates at the same speed that the inner edge of its accretion disk. This chapter shows that the observation of the YLW15 quasi-periodic flare suggests rather that the forming star rotates faster than its accretion disk, at the break up limit. The synchronism with the accretion disk, observed on T Tauri stars, must be reach progressively by magnetic breaking during the IR protostar stage, and more or less rapidly depending on the forming star mass. Recent studies have shown that T Tauri star X-ray emission could ionize the circumstellar disk, and play a role in the instability development, as well as stimulate the accretion. The protostar X-ray emission might be higher than the T Tauri star one, Chapter 5 presents a millimetric interferometric observation dedicated to measure this effect on YLW15. Finally, Chapter 6 reassembles conclusions and perspectives of this work. (author) [fr

Radial Velocities of Subgiant Stars and New Astrophysical Insights into RV Jitter

Science.gov (United States)

Luhn, Jacob; Bastien, Fabienne; Wright, Jason T.

2018-01-01

For nearly 20 years, the California Planet Search (CPS) has simultaneously monitored precise radial velocities and chromospheric activity levels of stars from Keck observatory to search for exoplanets. This sample provides a useful set of stars to better determine the dependence of RV jitter on flicker (which traces surface gravity) first shown in Bastien et al. (2014). We expand upon this initial work by examining a much larger sample of stars covering a much wider range of stellar parameters (effective temperature, surface gravity, and activity, among others). For more than 600 stars, there are enough RV measurements to distinguish this astrophysical jitter from accelerations due to orbital companions. To properly isolate RV jitter from these effects, we must first remove the RV signal due to these companions, including several previously unannounced giant planets around subgiant stars. We highlight some new results from our analysis of the CPS data. A more thorough understanding of the various sources of RV jitter and the underlying stellar phenomena that drive these intrinsic RV variations will enable more precise jitter estimates for RV follow-up targets such as those from K2 or the upcoming TESS mission.

TIME VARIATION OF AV AND RV FOR TYPE Ia SUPERNOVAE BEHIND INTERSTELLAR DUST

Science.gov (United States)

Huang, Xiaosheng; Biederman, M.; Herger, B.; Aldering, G. S.

2014-01-01

TIME VARIATION OF AV AND RV FOR TYPE Ia SUPERNOVAE BEHIND NON-UNIFORM INTERSTELLAR DUST ABSTRACT We investigate the time variation of the visual extinction, AV, and the total-to-selective extinction ratio, RV, resulting from interstellar dust in front of an expanding photospheric disk of a type Ia supernova (SN Ia). We simulate interstellar dust clouds according to a power law power spectrum and produce extinction maps that either follow a pseudo-Gaussian distribution or a lognormal distribution. The RV maps are produced through a correlation between AV and RV. With maps of AV and RV generated in each case (pseudo-Gaussian and lognormal), we then compute the effective AV and RV for a SN as its photospheric disk expands behind the dust screen. We find for a small percentage of SNe the AV and RV values can vary by a large factor from day to day in the first 40 days after explosion.

Oligomeric stability of Rapana venosa hemocyanin (RvH) and its structural subunits.

Science.gov (United States)

Dolashka-Angelova, Pavlina; Schwarz, Heinz; Dolashki, Aleksandar; Stevanovic, Stefan; Fecker, Miriam; Saeed, Muhammad; Voelter, Wolfgang

2003-03-21

The two structural subunits RvH1 and RvH2 were separated after overnight dialysis of Rapana venosa Hc against 130 mM Gly/NaOH buffer, pH 9.6, on an ion exchange column Hiload 26/10 Sepharose Q using a fast performance liquid chromatography (FPLC) system. The reassociation characteristics of these two RvH isoforms and the native molecule were studied in buffers with different pH values and concentrations of Ca(2+) and Mg(2+). Reassociation of mixed RvH subunits was performed over a period of several days using a stabilizing buffer (SB) of pH 7.0 containing different concentrations of Ca(2+) and Mg(2+) ions. After 2 days of dialysis, an RvH subunit mixture of didecamers and multidecamers was observed in the presence of 100 mM CaCl(2) and MgCl(2), though RvH1 and RvH2 are biochemically and immunologically different and have also different dissociation properties. The reassociation, performed at pH 9.6 with 2 mM CaCl(2) and MgCl(2) at 4 degrees C over a period of one to several weeks, led to the formation of decameric oligomers, while didecamers formed predominantly in the SB at pH 7.0. Higher concentrations of calcium and magnesium ions led to a more rapid reassociation of RvH1 resulting in long stable multidecamers and helical tubules, which were stable and slowly dissociated into shorter multidecamers and decamers at higher pH values. The reassociation of the RvH2 structural subunit in the same buffers processed slowly and yielded didecamers, shorter tubule polymers and long multidecamers which are less stable at higher pH values. The stability of RvH isoforms under varying ionic conditions is compared with the stability of keyhole limpet (KLH, Megathura crenulata) hemocyanin (KLH) and Haliotis tuberculata hemocyanin (HtH) isoforms. The process of dissociation and reassociation is connected with changes of the fluorescence intensity at 600 nm, which can be explained by differences in opalescence of the solutions of these two isoforms. The solutions of longer tubule

PLANETARY SYSTEM FORMATION IN THE PROTOPLANETARY DISK AROUND HL TAURI

Energy Technology Data Exchange (ETDEWEB)

Akiyama, Eiji; Hasegawa, Yasuhiro; Hayashi, Masahiko; Iguchi, Satoru, E-mail: eiji.akiyama@nao.ac.jp, E-mail: yasuhiro.hasegawa@nao.ac.jp [National Astronomical Observatory of Japan, 2-21-1 Osawa, Mitaka, Tokyo 181-8588 (Japan)

2016-02-20

We reprocess the Atacama Large Millimeter/Submillimeter Array (ALMA) long-baseline science verification data taken toward HL Tauri. Assuming the observed gaps are opened up by currently forming, unseen bodies, we estimate the mass of such hypothetical bodies based on the following two approaches: the Hill radius analysis and a more elaborate approach developed from the angular momentum transfer analysis in gas disks. For the former, the measured gap widths are used for estimating the mass of the bodies, while for the latter, the measured gap depths are utilized. We show that their masses are comparable to or less than the mass of Jovian planets. By evaluating Toomre’s gravitational instability (GI) condition and cooling effect, we find that the GI might be a mechanism to form the bodies in the outer region of the disk. As the disk might be gravitationally unstable only in the outer region of the disk, inward planetary migration would be needed to construct the current architecture of the observed disk. We estimate the gap-opening mass and show that type II migration might be able to play such a role. Combining GIs with inward migration, we conjecture that all of the observed gaps may be a consequence of bodies that might have originally formed at the outer part of the disk, and have subsequently migrated to the current locations. While ALMA’s unprecedented high spatial resolution observations can revolutionize our picture of planet formation, more dedicated observational and theoretical studies are needed to fully understand the HL Tauri images.

Pulsed Accretion in the T Tauri Binary TWA 3A

Energy Technology Data Exchange (ETDEWEB)

Tofflemire, Benjamin M.; Mathieu, Robert D. [Department of Astronomy, University of Wisconsin–Madison, 475 North Charter Street, Madison, WI 53706 (United States); Herczeg, Gregory J. [The Kavli Institute for Astronomy and Astrophysics, Peking University, Beijing 100871 (China); Akeson, Rachel L.; Ciardi, David R. [NASA Exoplanet Science Institute, IPAC/Caltech, Pasadena, CA 91125 (United States)

2017-06-20

TWA 3A is the most recent addition to a small group of young binary systems that both actively accrete from a circumbinary disk and have spectroscopic orbital solutions. As such, it provides a unique opportunity to test binary accretion theory in a well-constrained setting. To examine TWA 3A’s time-variable accretion behavior, we have conducted a two-year, optical photometric monitoring campaign, obtaining dense orbital phase coverage (∼20 observations per orbit) for ∼15 orbital periods. From U -band measurements we derive the time-dependent binary mass accretion rate, finding bursts of accretion near each periastron passage. On average, these enhanced accretion events evolve over orbital phases 0.85 to 1.05, reaching their peak at periastron. The specific accretion rate increases above the quiescent value by a factor of ∼4 on average but the peak can be as high as an order of magnitude in a given orbit. The phase dependence and amplitude of TWA 3A accretion is in good agreement with numerical simulations of binary accretion with similar orbital parameters. In these simulations, periastron accretion bursts are fueled by periodic streams of material from the circumbinary disk that are driven by the binary orbit. We find that TWA 3A’s average accretion behavior is remarkably similar to DQ Tau, another T Tauri binary with similar orbital parameters, but with significantly less variability from orbit to orbit. This is only the second clear case of orbital-phase-dependent accretion in a T Tauri binary.

PLANETARY SYSTEM FORMATION IN THE PROTOPLANETARY DISK AROUND HL TAURI

International Nuclear Information System (INIS)

Akiyama, Eiji; Hasegawa, Yasuhiro; Hayashi, Masahiko; Iguchi, Satoru

2016-01-01

We reprocess the Atacama Large Millimeter/Submillimeter Array (ALMA) long-baseline science verification data taken toward HL Tauri. Assuming the observed gaps are opened up by currently forming, unseen bodies, we estimate the mass of such hypothetical bodies based on the following two approaches: the Hill radius analysis and a more elaborate approach developed from the angular momentum transfer analysis in gas disks. For the former, the measured gap widths are used for estimating the mass of the bodies, while for the latter, the measured gap depths are utilized. We show that their masses are comparable to or less than the mass of Jovian planets. By evaluating Toomre’s gravitational instability (GI) condition and cooling effect, we find that the GI might be a mechanism to form the bodies in the outer region of the disk. As the disk might be gravitationally unstable only in the outer region of the disk, inward planetary migration would be needed to construct the current architecture of the observed disk. We estimate the gap-opening mass and show that type II migration might be able to play such a role. Combining GIs with inward migration, we conjecture that all of the observed gaps may be a consequence of bodies that might have originally formed at the outer part of the disk, and have subsequently migrated to the current locations. While ALMA’s unprecedented high spatial resolution observations can revolutionize our picture of planet formation, more dedicated observational and theoretical studies are needed to fully understand the HL Tauri images

Prevention of pneumonic plague in mice, rats, guinea pigs and non-human primates with clinical grade rV10, rV10-2 or F1-V vaccines

Science.gov (United States)

Quenee, Lauriane E.; Ciletti, Nancy A.; Elli, Derek; Hermanas, Timothy M.; Schneewind, Olaf

2012-01-01

Yersinia pestis causes plague, a disease with high mortality in humans that can be transmitted by fleabite or aerosol. A US Food and Drug Administration (FDA)-licensed plague vaccine is currently not available. Vaccine developers have focused on two subunits of Y. pestis: LcrV, a protein at the tip of type III secretion needles, and F1, the fraction 1 pilus antigen. F1-V, a hybrid generated via translational fusion of both antigens, is being developed for licensure as a plague vaccine. The rV10 vaccine is a non-toxigenic variant of LcrV lacking residues 271–300. Here we developed Current Good Manufacturing Practice (cGMP) protocols for rV10. Comparison of clinical grade rV10 with F1-V did not reveal significant differences in plague protection in mice, guinea pigs or cynomolgus macaques. We also developed cGMP protocols for rV10-2, a variant of rV10 with an altered affinity tag. Immunization with rV10-2 adsorbed to aluminum hydroxide elicited antibodies against LcrV and conferred pneumonic plague protection in mice, rats, guinea pigs, cynomolgus macaques and African Green monkeys. The data support further development of rV10-2 for FDA Investigational New Drug (IND) authorization review and clinical testing. PMID:21763383

C2D spitzer-IRS spectra of disks around T tauri stars : II. PAH emission features

NARCIS (Netherlands)

Geers, V. C.; Augereau, J. -C; Pontoppidan, K. M.; Dullemond, C. P.; Visser, R.; Kessler-Silacci, J. E.; Evans, N. J.; van Dishoeck, E. F.; Blake, G. A.; Boogert, A. C. A.; Lahuis, F.; Merin, B.

Aims. We search for Polycyclic Aromatic Hydrocarbon (PAH) features towards young low-mass (T Tauri) stars and compare them with surveys of intermediate mass (Herbig Ae/Be) stars. The presence and strength of the PAH features are interpreted with disk radiative transfer models exploring the PAH

Rv0004 is a new essential member of the mycobacterial DNA replication machinery.

Science.gov (United States)

Mann, Katherine M; Huang, Deborah L; Hooppaw, Anna J; Logsdon, Michelle M; Richardson, Kirill; Lee, Hark Joon; Kimmey, Jacqueline M; Aldridge, Bree B; Stallings, Christina L

2017-11-01

DNA replication is fundamental for life, yet a detailed understanding of bacterial DNA replication is limited outside the organisms Escherichia coli and Bacillus subtilis. Many bacteria, including mycobacteria, encode no identified homologs of helicase loaders or regulators of the initiator protein DnaA, despite these factors being essential for DNA replication in E. coli and B. subtilis. In this study we discover that a previously uncharacterized protein, Rv0004, from the human pathogen Mycobacterium tuberculosis is essential for bacterial viability and that depletion of Rv0004 leads to a block in cell cycle progression. Using a combination of genetic and biochemical approaches, we found that Rv0004 has a role in DNA replication, interacts with DNA and the replicative helicase DnaB, and affects DnaB-DnaA complex formation. We also identify a conserved domain in Rv0004 that is predicted to structurally resemble the N-terminal protein-protein interaction domain of DnaA. Mutation of a single conserved tryptophan within Rv0004's DnaA N-terminal-like domain leads to phenotypes similar to those observed upon Rv0004 depletion and can affect the association of Rv0004 with DnaB. In addition, using live cell imaging during depletion of Rv0004, we have uncovered a previously unappreciated role for DNA replication in coordinating mycobacterial cell division and cell size. Together, our data support that Rv0004 encodes a homolog of the recently identified DciA family of proteins found in most bacteria that lack the DnaC-DnaI helicase loaders in E. coli and B. subtilis. Therefore, the mechanisms of Rv0004 elucidated here likely apply to other DciA homologs and reveal insight into the diversity of bacterial strategies in even the most conserved biological processes.

Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities.

Directory of Open Access Journals (Sweden)

Peehu Pardeshi

Full Text Available A bioinformatics study revealed that Mycobacterium tuberculosis H37Rv (Mtb contains sequence homologs of Campylobacter jejuni protein glycosylation enzymes. The ORF Rv3634c from Mtb was identified as a sequence homolog of C. jejuni UDP-Gal/GalNAc 4-epimerase. This study reports the cloning of Rv3634c and its expression as an N-terminal His-tagged protein. The recombinant protein was shown to have UDP-Gal/Glc 4-epimerase activity by GOD-POD assay and by reverse phase HPLC. This enzyme was shown to have UDP-GalNAc 4-epimerase activity also. Residues Ser121, Tyr146 and Lys150 were shown by site-directed mutagenesis to be important for enzyme activity. Mutation of Ser121 and Tyr146 to Ala and Phe, respectively, led to complete loss of activity whereas mutation of Lys150 to Arg led to partial loss of activity. There were no gross changes in the secondary structures of any of these three mutants. These results suggest that Ser121 and Tyr146 are essential for epimerase activity of Rv3634c. UDP-Gal/Glc 4-epimerases from other organisms also have a catalytic triad consisting of Ser, Tyr and Lys. The triad carries out proton transfer from nucleotide sugar to NAD+ and back, thus effecting the epimerization of the substrate. Addition of NAD+ to Lys150 significantly abrogates the loss of activity, suggesting that, as in other epimerases, NAD+ is associated with Rv3634c.

Nærvær i pædagogisk praksis

DEFF Research Database (Denmark)

Nærvær i pædagogisk praksis handler om, hvordan lærere og pædagoger kan arbejde med mindfulness i skole og daginstitution. Målet er at give inspiration til, hvordan man kan skabe et lærings- og udviklingsmiljø, som understøtter en praksis, hvor børn får erfaringer med at være til stede i sig selv......, ligesom de giver eksempler på nærværende kunst- og musikundervisning.   Den røde tråd er ønsket om at bistå barnet i at rumme sig selv og andre og en interesse for de muligheder, som øget nærvær kan give det enkelte barn og fællesskabet....

EVIDENCE FOR AN FU ORIONIS-LIKE OUTBURST FROM A CLASSICAL T TAURI STAR

International Nuclear Information System (INIS)

Miller, Adam A.; Poznanski, Dovi; Silverman, Jeffrey M.; Kleiser, Io K. W.; Cenko, S. Bradley; Bloom, Joshua S.; Filippenko, Alexei V.; Hillenbrand, Lynne A.; Kasliwal, Mansi M.; Ofek, Eran O.; Quimby, Robert M.; Covey, Kevin R.; Rojas-Ayala, Barbara; Muirhead, Philip S.; Law, Nicholas M.; Dekany, Richard G.; Rahmer, Gustavo; Hale, David; Smith, Roger; Nugent, Peter

2011-01-01

We present pre- and post-outburst observations of the new FU Orionis-like young stellar object PTF 10qpf (also known as LkHα 188-G4 and HBC 722). Prior to this outburst, LkHα 188-G4 was classified as a classical T Tauri star (CTTS) on the basis of its optical emission-line spectrum superposed on a K8-type photosphere and its photometric variability. The mid-infrared spectral index of LkHα 188-G4 indicates a Class II-type object. LkHα 188-G4 exhibited a steady rise by ∼1 mag over ∼11 months starting in August 2009, before a subsequent more abrupt rise of >3 mag on a timescale of ∼2 months. Observations taken during the eruption exhibit the defining characteristics of FU Orionis variables: (1) an increase in brightness by ∼>4 mag, (2) a bright optical/near-infrared reflection nebula appeared, (3) optical spectra are consistent with a G supergiant and dominated by absorption lines, the only exception being Hα which is characterized by a P Cygni profile, (4) near-infrared spectra resemble those of late K-M giants/supergiants with enhanced absorption seen in the molecular bands of CO and H 2 O, and (5) outflow signatures in H and He are seen in the form of blueshifted absorption profiles. LkHα 188-G4 is the first member of the FU Orionis-like class with a well-sampled optical to mid-infrared spectral energy distribution in the pre-outburst phase. The association of the PTF 10qpf outburst with the previously identified CTTS LkHα 188-G4 (HBC 722) provides strong evidence that FU Orionis-like eruptions represent periods of enhanced disk accretion and outflow, likely triggered by instabilities in the disk. The early identification of PTF 10qpf as an FU Orionis-like variable will enable detailed photometric and spectroscopic observations during its post-outburst evolution for comparison with other known outbursting objects.

Changes in right ventricular function assessed by echocardiography in dog models of mild RV pressure overload.

Science.gov (United States)

Morita, Tomoya; Nakamura, Kensuke; Osuga, Tatsuyuki; Yokoyama, Nozomu; Morishita, Keitaro; Sasaki, Noboru; Ohta, Hiroshi; Takiguchi, Mitsuyoshi

2017-07-01

The assessment of hemodynamic change by echocardiography is clinically useful in patients with pulmonary hypertension. Recently, mild elevation of the mean pulmonary arterial pressure (PAP) has been shown to be associated with increased mortality. However, changes in the echocardiographic indices of right ventricular (RV) function are still unknown. The objective of this study was to validate the relationship between echocardiographic indices of RV function and right heart catheterization variables under a mild RV pressure overload condition. Echocardiography and right heart catheterization were performed in dog models of mild RV pressure overload induced by thromboxane A 2 analog (U46619) (n=7). The mean PAP was mildly increased (19.3±1.1 mm Hg), and the cardiac index was decreased. Most echocardiographic indices of RV function were significantly impaired even under a mild RV pressure overload condition. Multivariate analysis revealed that the RV free wall longitudinal strain (RVLS), standard deviation of the time-to-peak longitudinal strain of RV six segments (RV-SD) by speckle-tracking echocardiography, and Tei index were independent echocardiographic predictors of the mean PAP (free wall RVLS, β=-0.60, P<.001; RV-SD, β=0.40, P=.011), pulmonary vascular resistance (free wall RVLS, β=-0.39, P=.020; RV-SD, β=0.47, P=.0086; Tei index, β=0.34, P=.047), and cardiac index (Tei index, β=-0.65, P<.001). Free wall RVLS, RV-SD, and Tei index are useful for assessing the hemodynamic change under a mild RV pressure overload condition. © 2017, Wiley Periodicals, Inc.

Hydrochemical data from R/V MIKHAIL LOMONSOV and R/V AKADEMIK VERNADSKIY in the Indian Ocean from 16 May 1966 to 01 October 1981 (NODC Accession 0000277)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Hydrochemical data were collected from R/V MIKHAIL LOMONSOV and R/V AKADEMIK VERNADSKIY in the Indian Ocean from 16 May 1966 to 01 October 1981. Data were collected...

Mycobacterium tuberculosislpdC, Rv0462, induces dendritic cell maturation and Th1 polarization

Energy Technology Data Exchange (ETDEWEB)

Heo, Deok Rim [Department of Microbiology and Immunology, School of Medicine, Pusan National University, Beom-eo Ri, Mulgum Eop, Yangsan, Gyeongsangnam-do 626-770 (Korea, Republic of); Shin, Sung Jae; Kim, Woo Sik [Department of Microbiology, College of Medicine, Chungnam National University, Munwha-Dong, Jung-Ku, Daejeon 301-747 (Korea, Republic of); Noh, Kyung Tae; Park, Jin Wook; Son, Kwang Hee [Department of Microbiology and Immunology, School of Medicine, Pusan National University, Beom-eo Ri, Mulgum Eop, Yangsan, Gyeongsangnam-do 626-770 (Korea, Republic of); Park, Won Sun [Department of Physiology, Kangwon National University, School of Medicine, Chuncheon 200-701 (Korea, Republic of); Lee, Min-Goo [Department of Physiology, Korea University, College of Medicine, Anam-dong, Sungbuk-Gu, Seoul 136-705 (Korea, Republic of); Kim, Daejin [Department of Anatomy, Chung-Ang University, College of Medicine, 221 Heuksuk-Dong, Dongjak-Ku, Seoul 156-756 (Korea, Republic of); Shin, Yong Kyoo [Department of Pharmacology, Chung-Ang University, College of Medicine, 221 Heuksuk-Dong, Dongjak-Ku, Seoul 156-756 (Korea, Republic of); Jung, In Duk, E-mail: jungid@pusan.ac.kr [Department of Microbiology and Immunology, School of Medicine, Pusan National University, Beom-eo Ri, Mulgum Eop, Yangsan, Gyeongsangnam-do 626-770 (Korea, Republic of); Research Institute of Convergence of Biomedical Science and Technology, Pusan National University Yangsan Hospital, Beom-eo Ri, Mulgum Eop, Yangsan, Gyeongsangnam-do 626-770 (Korea, Republic of); Park, Yeong-Min, E-mail: immunpym@pusan.ac.kr [Department of Microbiology and Immunology, School of Medicine, Pusan National University, Beom-eo Ri, Mulgum Eop, Yangsan, Gyeongsangnam-do 626-770 (Korea, Republic of); Research Institute of Convergence of Biomedical Science and Technology, Pusan National University Yangsan Hospital, Beom-eo Ri, Mulgum Eop, Yangsan, Gyeongsangnam-do 626-770 (Korea, Republic of)

2011-08-05

Highlights: {yields} Treatment with Rv0462 induces the expression of surface molecules and the production of cytokines in DCs. {yields} Rv0462 induces the activation of MAPKs. {yields} Rv0462-treated DCs enhances the proliferation of CD4{sup +} T cells. -- Abstract: Mycobacterium tuberculosis, the etiological factor of pulmonary tuberculosis, causes significant morbidity and mortality worldwide. Activation of host immune responses for containment of mycobacterial infections involves participation of innate immune cells, such as dendritic cells (DCs). In this study, we demonstrated that the gene encoding lipoamide dehydrogenase C (lpdC) from M. tuberculosis, Rv0462, induce maturation and activation of DCs involved in the MAPKs signaling pathway. Moreover, Rv0462-treated DCs activated naive T cells, polarized CD4{sup +} and CD8{sup +} T cells to secrete IFN-{gamma} in syngeneic mixed lymphocyte reactions, which would be expected to contribute to Th1 polarization of the immune response. Our results suggest that Rv0462 can contribute to the innate and adaptive immune responses during tuberculosis infection, and thus modulate the clinical course of tuberculosis.

Mycobacterium tuberculosislpdC, Rv0462, induces dendritic cell maturation and Th1 polarization

International Nuclear Information System (INIS)

Heo, Deok Rim; Shin, Sung Jae; Kim, Woo Sik; Noh, Kyung Tae; Park, Jin Wook; Son, Kwang Hee; Park, Won Sun; Lee, Min-Goo; Kim, Daejin; Shin, Yong Kyoo; Jung, In Duk; Park, Yeong-Min

2011-01-01

Highlights: → Treatment with Rv0462 induces the expression of surface molecules and the production of cytokines in DCs. → Rv0462 induces the activation of MAPKs. → Rv0462-treated DCs enhances the proliferation of CD4 + T cells. -- Abstract: Mycobacterium tuberculosis, the etiological factor of pulmonary tuberculosis, causes significant morbidity and mortality worldwide. Activation of host immune responses for containment of mycobacterial infections involves participation of innate immune cells, such as dendritic cells (DCs). In this study, we demonstrated that the gene encoding lipoamide dehydrogenase C (lpdC) from M. tuberculosis, Rv0462, induce maturation and activation of DCs involved in the MAPKs signaling pathway. Moreover, Rv0462-treated DCs activated naive T cells, polarized CD4 + and CD8 + T cells to secrete IFN-γ in syngeneic mixed lymphocyte reactions, which would be expected to contribute to Th1 polarization of the immune response. Our results suggest that Rv0462 can contribute to the innate and adaptive immune responses during tuberculosis infection, and thus modulate the clinical course of tuberculosis.

Which is the better forecasting model? A comparison between HAR-RV and multifractality volatility

Science.gov (United States)

Ma, Feng; Wei, Yu; Huang, Dengshi; Chen, Yixiang

2014-07-01

In this paper, by taking the 5-min high frequency data of the Shanghai Composite Index as example, we compare the forecasting performance of HAR-RV and Multifractal volatility, Realized volatility, Realized Bipower Variation and their corresponding short memory model with rolling windows forecasting method and the Model Confidence Set which is proved superior to SPA test. The empirical results show that, for six loss functions, HAR-RV outperforms other models. Moreover, to make the conclusions more precise and robust, we use the MCS test to compare the performance of their logarithms form models, and find that the HAR-log(RV) has a better performance in predicting future volatility. Furthermore, by comparing the two models of HAR-RV and HAR-log(RV), we conclude that, in terms of performance forecasting, the HAR-log(RV) model is the best model among models we have discussed in this paper.

Ülehomme on õpetajate päev - milline oli teie parim õpetaja? / Toomas Edur, Tauri Tallermaa, Irene Käosaar...[jt.

Index Scriptorium Estoniae

2009-01-01

Küsimusele vastavad Rahvusooper Estonia balleti kunstiline juht Toomas Edur, koolitaja Tauri Tallermaa, haridus- ja teadusministeeriumi osakonnajuhataja Irene Käosaar, Tartu Karlova Gümnaasiumi direktor Undel Kokk ja näitleja Andrus Vaarik

Turbulent mixing layers in supersonic protostellar outflows, with application to DG Tauri

Science.gov (United States)

White, M. C.; Bicknell, G. V.; Sutherland, R. S.; Salmeron, R.; McGregor, P. J.

2016-01-01

Turbulent entrainment processes may play an important role in the outflows from young stellar objects at all stages of their evolution. In particular, lateral entrainment of ambient material by high-velocity, well-collimated protostellar jets may be the cause of the multiple emission-line velocity components observed in the microjet-scale outflows driven by classical T Tauri stars. Intermediate-velocity outflow components may be emitted by a turbulent, shock-excited mixing layer along the boundaries of the jet. We present a formalism for describing such a mixing layer based on Reynolds decomposition of quantities measuring fundamental properties of the gas. In this model, the molecular wind from large disc radii provides a continual supply of material for entrainment. We calculate the total stress profile in the mixing layer, which allows us to estimate the dissipation of turbulent energy, and hence the luminosity of the layer. We utilize MAPPINGS IV shock models to determine the fraction of total emission that occurs in [Fe II] 1.644 μm line emission in order to facilitate comparison to previous observations of the young stellar object DG Tauri. Our model accurately estimates the luminosity and changes in mass outflow rate of the intermediate-velocity component of the DG Tau approaching outflow. Therefore, we propose that this component represents a turbulent mixing layer surrounding the well-collimated jet in this object. Finally, we compare and contrast our model to previous work in the field.

Cellular and molecular basis of RV hypertrophy in congenital heart disease.

Science.gov (United States)

Iacobazzi, D; Suleiman, M-S; Ghorbel, M; George, S J; Caputo, M; Tulloh, R M

2016-01-01

RV hypertrophy (RVH) is one of the triggers of RV failure in congenital heart disease (CHD). Therefore, improving our understanding of the cellular and molecular basis of this pathology will help in developing strategic therapeutic interventions to enhance patient benefit in the future. This review describes the potential mechanisms that underlie the transition from RVH to RV failure. In particular, it addresses structural and functional remodelling that encompass contractile dysfunction, metabolic changes, shifts in gene expression and extracellular matrix remodelling. Both ischaemic stress and reactive oxygen species production are implicated in triggering these changes and will be discussed. Finally, RV remodelling in response to various CHDs as well as the potential role of biomarkers will be addressed. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://www.bmj.com/company/products-services/rights-and-licensing/

CLOSE COMPANIONS TO YOUNG STARS. I. A LARGE SPECTROSCOPIC SURVEY IN CHAMAELEON I AND TAURUS-AURIGA

International Nuclear Information System (INIS)

Nguyen, Duy Cuong; Brandeker, Alexis; Van Kerkwijk, Marten H.; Jayawardhana, Ray

2012-01-01

We present the results of a multiplicity survey of 212 T Tauri stars in the Chamaeleon I and Taurus-Auriga star-forming regions, based on high-resolution spectra from the Magellan Clay 6.5 m telescope. From these data, we achieved a typical radial velocity (RV) precision of ∼80 m s –1 with slower rotators yielding better precision, in general. For 174 of these stars, we obtained multi-epoch data with sufficient time baselines to identify binaries based on RV variations. We identified eight close binaries and four close triples, of which three and two, respectively, are new discoveries. The spectroscopic multiplicity fractions we find for Chamaeleon I (7%) and Taurus-Auriga (6%) are similar to each other, and to the results of field star surveys in the same mass and period regime. However, unlike the results from imaging surveys, the frequency of systems with close companions in our sample is not seen to depend on primary mass. Additionally, we do not find a strong correlation between accretion and close multiplicity. This implies that close companions are not likely the main source of the accretion shut down observed in weak-lined T Tauri stars. Our results also suggest that sufficient RV precision can be achieved for at least a subset of slowly rotating young stars to search for hot Jupiter planets.

Ülemiste City kvartal Tallinnas / Mattias Agabus, Eero Endjärv, Illimar Truverk...[jt.] ; fotod: Kaido Haagen

Index Scriptorium Estoniae

2008-01-01

asendiplaan, 3 korruste plaani, 3 värv. välisvaadet, restorani Mercado sisevaade; projekteerijad: M. Agabus, E. Endjärv, I.Truverk (Agabus, Endjärv & Truverk Arhitektid); hoonete arhitektuurne osa: E. Endjärv; sisearhitektid: K. Lents, H. Kääramees, T. Aunre (restoran Mercado); konstruktorid: Ü. Suvemaa, A. Lehtla, K. Adoberg; maastikuarhitektuur: Ü. Grišakov, M. Agabus, E. Endjärv

Structure of Rv1848 (UreA), the Mycobacterium tuberculosis urease γ subunit

International Nuclear Information System (INIS)

Habel, Jeff E.; Bursey, Evan H.; Rho, Beom-Seop; Kim, Chang-Yub; Segelke, Brent W.; Rupp, Bernhard; Park, Min S.; Terwilliger, Thomas C.; Hung, Li-Wei

2010-01-01

Crystal and solution structures of Rv1848 protein and their implications in the biological assembly of Mtb urease is presented. The crystal structure of the urease γ subunit (UreA) from Mycobacterium tuberculosis, Rv1848, has been determined at 1.8 Å resolution. The asymmetric unit contains three copies of Rv1848 arranged into a homotrimer that is similar to the UreA trimer in the structure of urease from Klebsiella aerogenes. Small-angle X-ray scattering experiments indicate that the Rv1848 protein also forms trimers in solution. The observed homotrimer and the organization of urease genes within the M. tuberculosis genome suggest that M. tuberculosis urease has the (αβγ) 3 composition observed for other bacterial ureases. The γ subunit may be of primary importance for the formation of the urease quaternary structure

1.55 Å resolution X-ray crystal structure of Rv3902c from Mycobacterium tuberculosis

Energy Technology Data Exchange (ETDEWEB)

Reddy, Bharat G.; Moates, Derek B. [University of Alabama at Birmingham, 1025 18th Street South, Birmingham, AL 35233 (United States); Kim, Heung-Bok [Los Alamos National Laboratory, Los Alamos, NM 87545 (United States); Green, Todd J. [University of Alabama at Birmingham, 1025 18th Street South, Birmingham, AL 35233 (United States); Kim, Chang-Yub; Terwilliger, Thomas C. [Los Alamos National Laboratory, Los Alamos, NM 87545 (United States); DeLucas, Lawrence J., E-mail: duke2@uab.edu [University of Alabama at Birmingham, 1025 18th Street South, Birmingham, AL 35233 (United States)

2014-03-25

The 1.55 Å resolution X-ray crystal structure of Rv3902c from M. tuberculosis reveals a novel fold. The crystallographic structure of the Mycobacterium tuberculosis (TB) protein Rv3902c (176 residues; molecular mass of 19.8 kDa) was determined at 1.55 Å resolution. The function of Rv3902c is unknown, although several TB genes involved in bacterial pathogenesis are expressed from the operon containing the Rv3902c gene. The unique structural fold of Rv3902c contains two domains, each consisting of antiparallel β-sheets and α-helices, creating a hand-like binding motif with a small binding pocket in the palm. Structural homology searches reveal that Rv3902c has an overall structure similar to that of the Salmonella virulence-factor chaperone InvB, with an r.m.s.d. for main-chain atoms of 2.3 Å along an aligned domain.

1.55 Å resolution X-ray crystal structure of Rv3902c from Mycobacterium tuberculosis

International Nuclear Information System (INIS)

Reddy, Bharat G.; Moates, Derek B.; Kim, Heung-Bok; Green, Todd J.; Kim, Chang-Yub; Terwilliger, Thomas C.; DeLucas, Lawrence J.

2014-01-01

The 1.55 Å resolution X-ray crystal structure of Rv3902c from M. tuberculosis reveals a novel fold. The crystallographic structure of the Mycobacterium tuberculosis (TB) protein Rv3902c (176 residues; molecular mass of 19.8 kDa) was determined at 1.55 Å resolution. The function of Rv3902c is unknown, although several TB genes involved in bacterial pathogenesis are expressed from the operon containing the Rv3902c gene. The unique structural fold of Rv3902c contains two domains, each consisting of antiparallel β-sheets and α-helices, creating a hand-like binding motif with a small binding pocket in the palm. Structural homology searches reveal that Rv3902c has an overall structure similar to that of the Salmonella virulence-factor chaperone InvB, with an r.m.s.d. for main-chain atoms of 2.3 Å along an aligned domain

Mottled Protoplanetary Disk Ionization by Magnetically Channeled T Tauri Star Energetic Particles

Science.gov (United States)

Fraschetti, F.; Drake, J. J.; Cohen, O.; Garraffo, C.

2018-02-01

The evolution of protoplanetary disks is believed to be driven largely by angular momentum transport resulting from magnetized disk winds and turbulent viscosity. The ionization of the disk that is essential for these processes has been thought to be due to host star coronal X-rays but could also arise from energetic particles produced by coronal flares, or traveling shock waves, and advected by the stellar wind. We have performed test-particle numerical simulations of energetic protons propagating into a realistic T Tauri stellar wind, including a superposed small-scale magnetostatic turbulence. The isotropic (Kolmogorov power spectrum) turbulent component is synthesized along the individual particle trajectories. We have investigated the energy range [0.1–10] GeV, consistent with expectations from Chandra X-ray observations of large flares on T Tauri stars and recent indications by the Herschel Space Observatory of a significant contribution of energetic particles to the disk ionization of young stars. In contrast with a previous theoretical study finding a dominance of energetic particles over X-rays in the ionization throughout the disk, we find that the disk ionization is likely dominated by X-rays over much of its area, except within narrow regions where particles are channeled onto the disk by the strongly tangled and turbulent magnetic field. The radial thickness of such regions is 5 stellar radii close to the star and broadens with increasing radial distance. This likely continues out to large distances from the star (10 au or greater), where particles can be copiously advected and diffused by the turbulent wind.

TIME VARIABILITY OF EMISSION LINES FOR FOUR ACTIVE T TAURI STARS. I. OCTOBER-DECEMBER IN 2010

Energy Technology Data Exchange (ETDEWEB)

Chou, Mei-Yin; Takami, Michihiro; Karr, Jennifer L.; Shang Hsien; Liu, Hauyu Baobab [Institute of Astronomy and Astrophysics, Academia Sinica, P.O. Box 23-141, Taipei 10617, Taiwan (China); Manset, Nadine [Canada-France-Hawaii Telescope, 65-1238 Mamalahoa Hwy, Kamuela, HI 96743 (United States); Beck, Tracy [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Pyo, Tae-Soo [Subaru Telescope, 650 North Aohoku Place, Hilo, HI 96720 (United States); Chen, Wen-Ping; Panwar, Neelam [Institute of Astronomy, National Central University, Taoyuan County 32001, Taiwan (China)

2013-04-15

We present optical spectrophotometric monitoring of four active T Tauri stars (DG Tau, RY Tau, XZ Tau, RW Aur A) at high spectral resolution (R {approx}> 1 Multiplication-Sign 10{sup 4}), to investigate the correlation between time variable mass ejection seen in the jet/wind structure of the driving source and time variable mass accretion probed by optical emission lines. This may allow us to constrain the understanding of the jet/wind launching mechanism, the location of the launching region, and the physical link with magnetospheric mass accretion. In 2010, observations were made at six different epochs to investigate how daily and monthly variability might affect such a study. We perform comparisons between the line profiles we observed and those in the literature over a period of decades and confirm the presence of time variability separate from the daily and monthly variability during our observations. This is so far consistent with the idea that these line profiles have a long-term variability (3-20 yr) related to episodic mass ejection suggested by the structures in the extended flow components. We also investigate the correlations between equivalent widths and between luminosities for different lines. We find that these correlations are consistent with the present paradigm of steady magnetospheric mass accretion and emission line regions that are close to the star.

TIME VARIABILITY OF EMISSION LINES FOR FOUR ACTIVE T TAURI STARS. I. OCTOBER–DECEMBER IN 2010

International Nuclear Information System (INIS)

Chou, Mei-Yin; Takami, Michihiro; Karr, Jennifer L.; Shang Hsien; Liu, Hauyu Baobab; Manset, Nadine; Beck, Tracy; Pyo, Tae-Soo; Chen, Wen-Ping; Panwar, Neelam

2013-01-01

We present optical spectrophotometric monitoring of four active T Tauri stars (DG Tau, RY Tau, XZ Tau, RW Aur A) at high spectral resolution (R ∼> 1 × 10 4 ), to investigate the correlation between time variable mass ejection seen in the jet/wind structure of the driving source and time variable mass accretion probed by optical emission lines. This may allow us to constrain the understanding of the jet/wind launching mechanism, the location of the launching region, and the physical link with magnetospheric mass accretion. In 2010, observations were made at six different epochs to investigate how daily and monthly variability might affect such a study. We perform comparisons between the line profiles we observed and those in the literature over a period of decades and confirm the presence of time variability separate from the daily and monthly variability during our observations. This is so far consistent with the idea that these line profiles have a long-term variability (3-20 yr) related to episodic mass ejection suggested by the structures in the extended flow components. We also investigate the correlations between equivalent widths and between luminosities for different lines. We find that these correlations are consistent with the present paradigm of steady magnetospheric mass accretion and emission line regions that are close to the star.

Phase I trial of RV3-BB rotavirus vaccine: a human neonatal rotavirus vaccine.

Science.gov (United States)

Danchin, M; Kirkwood, C D; Lee, K J; Bishop, R F; Watts, E; Justice, F A; Clifford, V; Cowley, D; Buttery, J P; Bines, J E

2013-05-28

RV3 is a human neonatal rotavirus strain (G3P[6]) that has been associated with asymptomatic neonatal infection and replicates well in the infant gut. RV3-BB rotavirus vaccine has been developed as a rotavirus vaccine candidate for administration at birth. A single-centre, double-blind, randomised placebo-controlled Phase I study evaluated the safety and tolerability of a single oral dose of the second generation RV3-BB rotavirus vaccine (8.3×10(6)FFU/mL) in 20 adults, 20 children and 20 infants (10 vaccine and 10 placebo per age cohort). Vaccine take was defined as seroconversion (a 3-fold increase in serum anti-rotavirus IgA or serum neutralising antibody (SNA) from baseline at day 28 post-dose) or evidence of RV3-BB viral replication in the faeces by RT-PCR analysis 3-6 days post-vaccination. RV3-BB presence was confirmed by sequence analysis. The RV3-BB vaccine was well tolerated in all participants, with no pattern of adverse events shown to be associated with the study vaccine. In the infant cohort, vaccine take was demonstrated in 8/9 infants following a single dose of vaccine compared with 2/7 placebo recipients. In the infant vaccine group, 5/9 infants exhibited either IgA or SNA seroconversion and 7/9 infants had evidence of RV3-BB replication on days 3-6, compared with 2/7 infants who seroconverted and 0/10 infants with evidence of replication in the placebo group. Two infants in the placebo group had serological evidence of a rotavirus infection within the 28-day study period: one demonstrated an IgA and the other an SNA response, with wild-type virus replication detected in another infant. A single dose of RV3-BB rotavirus vaccine was well tolerated in adults, children and infants. Most infants (8/9) who received RV3-BB demonstrated vaccine take following a single dose. These data support progression of RV3-BB to Phase II immunogenicity and efficacy trials. Copyright © 2013 Elsevier Ltd. All rights reserved.

V819 TAU: A RARE WEAK-LINED T TAURI STAR WITH A WEAK INFRARED EXCESS

International Nuclear Information System (INIS)

Furlan, E.; Forrest, W. J.; Manoj, P.; Kim, K. H.; Watson, Dan M.; Sargent, B. A.

2009-01-01

We use Spitzer data to infer that the small infrared excess of V819 Tau, a weak-lined T Tauri star in Taurus, is real and not attributable to a 'companion' 10'' to the south. We do not confirm the mid-infrared excess in HBC 427 and V410 X-ray 3, which are also non-accreting T Tauri stars in the same region; instead, for the former object, the excess arises from a red companion 9'' to the east. A single-temperature blackbody fit to the continuum excess of V819 Tau implies a dust temperature of 143 K; however, a better fit is achieved when the weak 10 and 20 μm silicate emission features are also included. We infer a disk of sub-μm silicate grains between about 1 AU and several 100 AU with a constant surface density distribution. The mid-infrared excess of V819 Tau can be successfully modeled with dust composed mostly of small amorphous olivine grains at a temperature of 85 K, and most of the excess emission is optically thin. The disk could still be primordial, but gas-poor and therefore short-lived, or already at the debris disk stage, which would make it one of the youngest debris disk systems known.

Clumpy molecular clouds: A dynamic model self-consistently regulated by T Tauri star formation

International Nuclear Information System (INIS)

Norman, C.; Silk, J.

1980-01-01

A new model is proposed which can account for the longevity, energetics, and dynamical structure of dark molecular clouds. It seems clear that the kinetic and gravitational energy in macroscopic cloud motions cannot account for the energetic of many molecular clouds. A stellar energy source must evidently be tapped, and infrared observations indicate that one cannot utilize massive stars in dark clouds. Recent observations of a high space density of T Tauri stars in some dark clouds provide the basis for our assertion that high-velocity winds from these low-mass pre--main-sequence stars provide a continuous dynamic input into molecular clouds. The T Tauri winds sweep up shells of gas, the intersections or collisions of which form dense clumps embedded in a more rarefied interclump medium. Observations constrain the clumps to be ram-pressure confined, but at the relatively low Mach numbers, continuous leakage occurs. This mass input into the interclump medium leads to the existence of two phases; a dense, cold phase (clumps of density approx.10 4 --10 5 cm -3 and temperature approx.10 K) and a warm, more diffuse, interclump medium (ICM, of density approx.10 3 --10 4 cm -3 and temperature approx.30 K). Clump collisions lead to coalescence, and the evolution of the mass spectrum of clumps is studied

Teadlase eetika / Magnus Ilmjärv

Index Scriptorium Estoniae

Ilmjärv, Magnus, 1961-

2008-01-01

Vastukaja art.: Valge, Jaak. Pätsi riigipööret ei inspireeritud väljastpoolt // Postimees (2008) 26. apr., lk. 13. President Konstantin Pätsi kohta leitud uutest arhiivimaterjalidest. Raamatu "Hääletu alistumine" autor, ajaloolane Magnus Ilmjärv peab Jaak Valge kriitikat tema suhtes põhjendamatult suureks

Geir Hønneland, Russia and the Arctic: Environment, Identity and Foreign Policy & Leif Christian Jensen, International Relations in the Arctic: Norway and the Struggle for Power in the New North (London/New York: IB Tauris, 2016

Directory of Open Access Journals (Sweden)

Romain Chuffart

2017-03-01

Full Text Available A review of the books: Geir Hønneland, Russia and the Arctic: Environment, Identity and Foreign Policy (London/New York: IB Tauris, 2016; and Leif Christian Jensen, International Relations in the Arctic: Norway and the Struggle for Power in the New North (London/New York: IB Tauris, 2016

ON THE TRANSITIONAL DISK CLASS: LINKING OBSERVATIONS OF T TAURI STARS AND PHYSICAL DISK MODELS

International Nuclear Information System (INIS)

Espaillat, C.; Andrews, S.; Qi, C.; Wilner, D.; Ingleby, L.; Calvet, N.; Hernández, J.; Furlan, E.; D'Alessio, P.; Muzerolle, J.

2012-01-01

Two decades ago 'transitional disks' (TDs) described spectral energy distributions (SEDs) of T Tauri stars with small near-IR excesses, but significant mid- and far-IR excesses. Many inferred this indicated dust-free holes in disks possibly cleared by planets. Recently, this term has been applied disparately to objects whose Spitzer SEDs diverge from the expectations for a typical full disk (FD). Here, we use irradiated accretion disk models to fit the SEDs of 15 such disks in NGC 2068 and IC 348. One group has a 'dip' in infrared emission while the others' continuum emission decreases steadily at all wavelengths. We find that the former have an inner disk hole or gap at intermediate radii in the disk and we call these objects 'transitional disks' and 'pre-transitional disks' (PTDs), respectively. For the latter group, we can fit these SEDs with FD models and find that millimeter data are necessary to break the degeneracy between dust settling and disk mass. We suggest that the term 'transitional' only be applied to objects that display evidence for a radical change in the disk's radial structure. Using this definition, we find that TDs and PTDs tend to have lower mass accretion rates than FDs and that TDs have lower accretion rates than PTDs. These reduced accretion rates onto the star could be linked to forming planets. Future observations of TDs and PTDs will allow us to better quantify the signatures of planet formation in young disks.

Mid-infrared interferometric variability of DG Tauri: Implications for the inner-disk structure

Science.gov (United States)

Varga, J.; Gabányi, K. É.; Ábrahám, P.; Chen, L.; Kóspál, Á.; Menu, J.; Ratzka, Th.; van Boekel, R.; Dullemond, C. P.; Henning, Th.; Jaffe, W.; Juhász, A.; Moór, A.; Mosoni, L.; Sipos, N.

2017-08-01

Context. DG Tau is a low-mass pre-main sequence star, whose strongly accreting protoplanetary disk exhibits a so-far enigmatic behavior: its mid-infrared thermal emission is strongly time-variable, even turning the 10 μm silicate feature from emission to absorption temporarily. Aims: We look for the reason for the spectral variability at high spatial resolution and at multiple epochs. Methods: Infrared interferometry can spatially resolve the thermal emission of the circumstellar disk, also giving information about dust processing. We study the temporal variability of the mid-infrared interferometric signal, observed with the VLTI/MIDI instrument at six epochs between 2011 and 2014. We fit a geometric disk model to the observed interferometric signal to obtain spatial information about the disk. We also model the mid-infrared spectra by template fitting to characterize the profile and time dependence of the silicate emission. We use physically motivated radiative transfer modeling to interpret the mid-infrared interferometric spectra. Results: The inner disk (r 1-3 au) spectra show a crystalline silicate feature in emission, similar to the spectra of comet Hale-Bopp. The striking difference between the inner and outer disk spectral feature is highly unusual among T Tauri stars. The mid-infrared variability is dominated by the outer disk. The strength of the silicate feature changed by more than a factor of two. Between 2011 and 2014 the half-light radius of the mid-infrared-emitting region decreased from 1.15 to 0.7 au. Conclusions: For the origin of the absorption we discuss four possible explanations: a cold obscuring envelope, an accretion heated inner disk, a temperature inversion on the disk surface and a misaligned inner geometry. The silicate emission in the outer disk can be explained by dusty material high above the disk plane, whose mass can change with time, possibly due to turbulence in the disk. Based on observations made with the ESO Very Large

Emission-line widths and stellar-wind flows in T Tauri stars

International Nuclear Information System (INIS)

Sa, C.; Lago, M.T.V.T.

1986-01-01

Spectra are reported of T Tauri stars taken with the IPCS on the Isaac Newton Telescope at the Observatorio del Roque de los Muchachos at a dispersion of l7 A mm -1 . These were taken in order to determine emission-line widths and hence flow velocities in the winds of these stars following the successful modelling of the wind from RU Lupi using such data. Line widths in RW Aur suggest a similar pattern to the wind flow as in RU Lupi with velocities rising in the inner chromosphere of the star and then entering a 'ballistic' zone. The wind from DFTau is also similar but velocities are generally much lower and the lines sharper. (author)

Rationale and design of the ranolazine PH-RV study: a multicentred randomised and placebo-controlled study of ranolazine to improve RV function in patients with non-group 2 pulmonary hypertension.

Science.gov (United States)

Han, Yuchi; Forfia, Paul R; Vaidya, Anjali; Mazurek, Jeremy A; Park, Myung H; Ramani, Gautam; Chan, Stephen Y; Waxman, Aaron B

2018-01-01

A major determining factor on outcomes in patients with pulmonary arterial hypertension (PAH) is right ventricular (RV) function. Ranolazine, which is currently approved for chronic stable angina, has been shown to improve RV function in an animal model and has been shown to be safe in small human studies with PAH. We aim to study the effect of ranolazine on RV function using cardiovascular magnetic resonance (CMR) in patients with pulmonary hypertension (non-group 2 patients) and monitor the effect of ranolazine on metabolism using metabolic profiling and changes of microRNA. This study is a longitudinal, randomised, double-blind, placebo-controlled, multicentre proof-of-concept study in 24 subjects with pulmonary hypertension and RV dysfunction treated with ranolazine over 6 months. Subjects who meet the protocol definition of RV dysfunction (CMR RV ejection fraction (EF) <45%) will be randomised to ranolazine or placebo with a ratio of 2:1. Enrolled subjects will be assessed for functional class, 6 min walk test and health outcome based on SF-36 tool. Peripheral blood will be obtained for N-terminal-pro brain natriuretic peptide, metabolic profiling, and microRNA at baseline and the conclusion of the treatment period. CMR will be performed at baseline and the conclusion of the treatment period. The primary outcome is change in RVEF. The exploratory outcomes include clinical, other CMR parameters, metabolic and microRNA changes. The trial protocol was approved by Institutional Review Boards. The trial findings will be disseminated in scientific journals and meetings. NCT01839110 and NCT02829034; Pre-results.

Determination of particles concentration in Black Sea waters from spectral beam attenuation coefficient

Science.gov (United States)

Korchemkina, E. N.; Latushkin, A. A.; Lee, M. E.

2017-11-01

The methods of determination of concentration and scattering by suspended particles in seawater are compared. The methods considered include gravimetric measurements of the mass concentration of suspended matter, empirical and analytical calculations based on measurements of the light beam attenuation coefficient (BAC) in 4 spectral bands, calculation of backscattering by particles using satellite measurements in the visible spectral range. The data were obtained in two cruises of the R/V "Professor Vodyanitsky" in the deep-water part of the Black Sea in July and October 2016., Spatial distribution of scattering by marine particles according to satellite data is in good agreement with the contact measurements.

Disk accretion onto magnetic T Tauri stars

International Nuclear Information System (INIS)

Koenigl, A.

1991-01-01

The dynamical and radiative consequences of disk accretion onto magnetic T Tauri stars (TTS) are examined using the Ghosh and Lamb model. It is shown that a prolonged disk accretion phase is compatible with the low rotation rates measured in these stars if they possess a kilogauss strength field that disrupts the disk at a distance of a few stellar radii from the center. It is estimated that a steady state in which the net torque exerted on the star is zero can be attained on a time scale that is shorter than the age of the youngest visible TTS. Although the disk does not develop an ordinary shear boundary layer in this case, one can account for the observed UV excess and Balmer emission in terms of the shocks that form at the bottom of the high-latitude magnetic accretion columns on the stellar surface. This picture also provides a natural explanation of some of the puzzling variability properties of stars like DF Tau and RY Lup. YY Ori stars are interpreted as magnetic TTS in which the observer's line of sight is roughly parallel to an accretion column. 37 refs

Rv2477c is an antibiotic-sensitive manganese-dependent ABC-F ATPase in Mycobacterium tuberculosis.

Science.gov (United States)

Daniel, Jaiyanth; Abraham, Liz; Martin, Amanda; Pablo, Xyryl; Reyes, Shelby

2018-01-01

The Rv2477c protein of Mycobacterium tuberculosis (Mtb) belongs to the ATP-binding cassette (ABC) subfamily F that contains proteins with tandem nucleotide-binding domains but lacking transmembrane domains. ABC-F subfamily proteins have been implicated in diverse cellular processes such as translation, antibiotic resistance, cell growth and nutrient sensing. In order to investigate the biochemical characteristics of Rv2477c, we expressed it in Escherichia coli, purified it and characterized its enzymatic functions. We show that Rv2477c displays strong ATPase activity (V max  = 45.5 nmol/mg/min; K m  = 90.5 μM) that is sensitive to orthovanadate. The ATPase activity was maximal in the presence of Mn 2+ at pH 5.2. The Rv2477c protein was also able to hydrolyze GTP, TTP and CTP but at lower rates. Glutamate to glutamine substitutions at amino acid residues 185 and 468 in the two Walker B motifs of Rv2477c severely inhibited its ATPase activity. The antibiotics tetracycline and erythromycin, which target protein translation, were able to inhibit the ATPase activity of Rv2477c. We postulate that Rv2477c could be involved in mycobacterial protein translation and in resistance to tetracyclines and macrolides. This is the first report of the biochemical characterization of an ABC-F subfamily protein in Mtb. Copyright © 2017 Elsevier Inc. All rights reserved.

New upper limit to the coronal line emission from the T Tauri star RU Lupi

Energy Technology Data Exchange (ETDEWEB)

Gahm, G F [Stockholm Observatory (Sweden); Lago, M T.V.T. [Universidade do Porto (Portugal). Grupo de Matematica Aplicada; Penston, M V [ESTEC, European Space Agency, Villafranca Satellite Tracking Station, Madrid, (Spain)

1981-05-01

A high dispersion AAT spectrogram sets an upper limit on the (Fe x) emission line lambda 6374.5 A in the T Tauri star RU Lupi. The intensity of any 10/sup 6/ K corona in this star is less than 600 times that of the Sun compared to a chromosphere and transition region of 3 x 10/sup 3/ to 2 x 10/sup 5/ K gas 10/sup 6/ times stronger than the Sun's. The important theoretical implications are noted.

Mycobacterium tuberculosis Universal Stress Protein Rv2623 Regulates Bacillary Growth by ATP Binding: Requirement for Establishing Chronic Persistent Infection

Energy Technology Data Exchange (ETDEWEB)

Drumm, J.; Mi, K; Bilder, P; Sun, M; Lim, J; Bielefeldt-Ohmann, H; Basaraba, R; So, M; Zhu, G; et. al.

2009-01-01

Tuberculous latency and reactivation play a significant role in the pathogenesis of tuberculosis, yet the mechanisms that regulate these processes remain unclear. The Mycobacterium tuberculosisuniversal stress protein (USP) homolog, rv2623, is among the most highly induced genes when the tubercle bacillus is subjected to hypoxia and nitrosative stress, conditions thought to promote latency. Induction of rv2623 also occurs when M. tuberculosis encounters conditions associated with growth arrest, such as the intracellular milieu of macrophages and in the lungs of mice with chronic tuberculosis. Therefore, we tested the hypothesis that Rv2623 regulates tuberculosis latency. We observed that an Rv2623-deficient mutant fails to establish chronic tuberculous infection in guinea pigs and mice, exhibiting a hypervirulence phenotype associated with increased bacterial burden and mortality. Consistent with this in vivo growth-regulatory role, constitutive overexpression of rv2623 attenuates mycobacterial growth in vitro. Biochemical analysis of purified Rv2623 suggested that this mycobacterial USP binds ATP, and the 2.9-A-resolution crystal structure revealed that Rv2623 engages ATP in a novel nucleotide-binding pocket. Structure-guided mutagenesis yielded Rv2623 mutants with reduced ATP-binding capacity. Analysis of mycobacteria overexpressing these mutants revealed that the in vitro growth-inhibitory property of Rv2623 correlates with its ability to bind ATP. Together, the results indicate that i M. tuberculosis Rv2623 regulates mycobacterial growth in vitro and in vivo, and ii Rv2623 is required for the entry of the tubercle bacillus into the chronic phase of infection in the host; in addition, iii Rv2623 binds ATP; and iv the growth-regulatory attribute of this USP is dependent on its ATP-binding activity. We propose that Rv2623 may function as an ATP-dependent signaling intermediate in a pathway that promotes persistent infection.

Three-dimensional models of Mycobacterium tuberculosis proteins Rv1555, Rv1554 and their docking analyses with sildenafil, tadalafil, vardenafil drugs, suggest interference with quinol binding likely to affect protein's function.

Science.gov (United States)

Dash, Pallabini; Bala Divya, M; Guruprasad, Lalitha; Guruprasad, Kunchur

2018-04-18

Earlier based on bioinformatics analyses, we had predicted the Mycobacterium tuberculosis (M.tb) proteins; Rv1555 and Rv1554, among the potential new tuberculosis drug targets. According to the 'TB-drugome' the Rv1555 protein is 'druggable' with sildenafil (Viagra), tadalafil (Cialis) and vardenafil (Levitra) drugs. In the present work, we intended to understand via computer modeling studies, how the above drugs are likely to inhibit the M.tb protein's function. The three-dimensional computer models for M.tb proteins; Rv1555 and Rv1554 constructed on the template of equivalent membrane anchor subunits of the homologous E.coli quinol fumarate reductase respiratory protein complex, followed by drug docking analyses, suggested that the binding of above drugs interferes with quinol binding sites. Also, we experimentally observed the in-vitro growth inhibition of E.coli bacteria containing the homologous M.tb protein sequences with sildenafil and tadalafil drugs. The predicted binding sites of the drugs is likely to affect the above M.tb proteins function as quinol binding is known to be essential for electron transfer function during anaerobic respiration in the homologous E.coli protein complex. Therefore, sildenafil and related drugs currently used in the treatment of male erectile dysfunction targeting the human phosphodiesterase 5 enzyme may be evaluated for their plausible role as repurposed drugs to treat human tuberculosis.

Altered Immune Cytokine Expression Associated with KoRV B Infection and Season in Captive Koalas

Science.gov (United States)

Higgins, Damien P.

2016-01-01

Koala (Phascolarctos cinereus) populations are increasingly vulnerable and one of the main threats is chlamydial infection. Koala retrovirus (KoRV) has been proposed as an underlying cause of the koala’s susceptibility to infection with Chlamydia and high rates of lymphoid neoplasia; however, the regionally ubiquitous, endogenous nature of this virus suggests that KoRV A infection is not sufficient for immune suppression to occur. A recently discovered exogenous variant of KoRV, KoRV B, has several structural elements that cause increased pathogenicity in related retroviruses and was associated with lymphoid neoplasia in one study. The present study assesses whether KoRV B infection is associated with alterations in immune function. Cytokine gene expression by mitogen stimulated lymphocytes of KoRV B positive (n = 5–6) and negative (n = 6–7) captive koalas was evaluated by qPCR four times (April 2014-February 2015) to control for seasonal variation. Key immune genes in the Th1 pathway (IFNγ, TNFα), Th2 pathway (IL 10, IL4, IL6) and Th17 pathway (IL17A), along with CD4:CD8 ratio, were assessed. KoRV B positive koalas showed significantly increased up-regulation of IL17A and IL10 in three out of four sampling periods and IFNγ, IL6, IL4 and TNFα in two out of four. IL17A is an immune marker for chlamydial pathogenesis in the koala; increased expression of IL17A in KoRV B positive koalas, and concurrent immune dysregulation, may explain the differences in susceptibility to chlamydial infection and severity of disease seen between individuals and populations. There was also marked seasonal variation in up-regulation for most of the cytokines and the CD4:CD8 ratio. The up-regulation in both Th1 and Th2 cytokines mirrors changes associated with immune dysregulation in humans and felids as a result of retroviral infections. This is the first report of altered immune expression in koalas infected by an exogenous variant of KoRV and also the first report of

Crystallization and preliminary X-ray analysis of a novel esterase Rv0045c from Mycobacterium tuberculosis

International Nuclear Information System (INIS)

Xu, Lipeng; Guo, Jiubiao; Zheng, Xiangdong; Wen, Tingyi; Sun, Fei; Liu, Siguo; Pang, Hai

2010-01-01

The novel esterase Rv0045c from M. tuberculosis was expressed and purified to homogeneity. The crystals of native and SeMet-labelled Rv0045c protein that were obtained diffracted to resolutions of 2.7 and 3.0 Å, respectively. The Rv0045c protein is predicted to be an esterase that is involved in lipid metabolism in Mycobacterium tuberculosis. The protein was overproduced in Escherichia coli, purified and crystallized using the hanging-drop vapour-diffusion method. The Rv0045c protein crystals diffracted to a resolution of 2.7 Å using a synchrotron-radiation source and belonged to space group P3 1 or P3 2 , with unit-cell parameters a = b = 73.465, c = 48.064 Å, α = β = 90, γ = 120°. Purified SeMet-labelled Rv0045c protein was also crystallized and formed crystals that diffracted to a resolution of 3.0 Å using an in-house X-ray radiation source

HOT GAS LINES IN T TAURI STARS

International Nuclear Information System (INIS)

Ardila, David R.; Herczeg, Gregory J.; Gregory, Scott G.; Hillenbrand, Lynne A.; Ingleby, Laura; Bergin, Edwin; Bethell, Thomas; Calvet, Nuria; France, Kevin; Brown, Alexander; Edwards, Suzan; Johns-Krull, Christopher; Linsky, Jeffrey L.; Yang, Hao; Valenti, Jeff A.; Abgrall, Hervé; Alexander, Richard D.; Brown, Joanna M.; Espaillat, Catherine; Hussain, Gaitee

2013-01-01

For Classical T Tauri Stars (CTTSs), the resonance doublets of N V, Si IV, and C IV, as well as the He II 1640 Å line, trace hot gas flows and act as diagnostics of the accretion process. In this paper we assemble a large high-resolution, high-sensitivity data set of these lines in CTTSs and Weak T Tauri Stars (WTTSs). The sample comprises 35 stars: 1 Herbig Ae star, 28 CTTSs, and 6 WTTSs. We find that the C IV, Si IV, and N V lines in CTTSs all have similar shapes. We decompose the C IV and He II lines into broad and narrow Gaussian components (BC and NC). The most common (50%) C IV line morphology in CTTSs is that of a low-velocity NC together with a redshifted BC. For CTTSs, a strong BC is the result of the accretion process. The contribution fraction of the NC to the C IV line flux in CTTSs increases with accretion rate, from ∼20% to up to ∼80%. The velocity centroids of the BCs and NCs are such that V BC ∼> 4 V NC , consistent with the predictions of the accretion shock model, in at most 12 out of 22 CTTSs. We do not find evidence of the post-shock becoming buried in the stellar photosphere due to the pressure of the accretion flow. The He II CTTSs lines are generally symmetric and narrow, with FWHM and redshifts comparable to those of WTTSs. They are less redshifted than the CTTSs C IV lines, by ∼10 km s –1 . The amount of flux in the BC of the He II line is small compared to that of the C IV line, and we show that this is consistent with models of the pre-shock column emission. Overall, the observations are consistent with the presence of multiple accretion columns with different densities or with accretion models that predict a slow-moving, low-density region in the periphery of the accretion column. For HN Tau A and RW Aur A, most of the C IV line is blueshifted suggesting that the C IV emission is produced by shocks within outflow jets. In our sample, the Herbig Ae star DX Cha is the only object for which we find a P-Cygni profile in the C IV

Purification, crystallization and preliminary X-ray crystallographic studies of Rv3705c from Mycobacterium tuberculosis

International Nuclear Information System (INIS)

Lu, Feifei; Gao, Feng; Li, Honglin; Gong, Weimin; Zhou, Lin; Bi, Lijun

2014-01-01

The cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of Rv3705c from M. tuberculosis are described. The conserved protein Rv3705c from Mycobacterium tuberculosis has been cloned, expressed, purified and crystallized by the sitting-drop vapour-diffusion method using PEG 3350 as a precipitant. The Rv3705c crystals exhibited space group P6 1 22 or P6 5 22, with unit-cell parameters a = b = 198.0, c = 364.1 Å, α = β = 90, γ = 120°, and diffracted to a resolution of 3.3 Å

Purification, crystallization and preliminary X-ray crystallographic studies of Rv3705c from Mycobacterium tuberculosis

Energy Technology Data Exchange (ETDEWEB)

Lu, Feifei [East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People’s Republic of (China); Gao, Feng [Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People’s Republic of (China); Li, Honglin [East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People’s Republic of (China); Gong, Weimin [Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People’s Republic of (China); Zhou, Lin, E-mail: gdtb-bg@vip.163.com [Center for Tuberculosis Control of Guangdong Province, Guangzhou, People’s Republic of (China); Bi, Lijun, E-mail: gdtb-bg@vip.163.com [East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, People’s Republic of (China)

2014-07-23

The cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of Rv3705c from M. tuberculosis are described. The conserved protein Rv3705c from Mycobacterium tuberculosis has been cloned, expressed, purified and crystallized by the sitting-drop vapour-diffusion method using PEG 3350 as a precipitant. The Rv3705c crystals exhibited space group P6{sub 1}22 or P6{sub 5}22, with unit-cell parameters a = b = 198.0, c = 364.1 Å, α = β = 90, γ = 120°, and diffracted to a resolution of 3.3 Å.

IMAGING THE DISK AND JET OF THE CLASSICAL T TAURI STAR AA TAU

International Nuclear Information System (INIS)

Cox, Andrew W.; Grady, Carol A.; Hammel, Heidi B.; Hornbeck, Jeremy; Russell, Ray W.; Sitko, Michael L.; Woodgate, Bruce E.

2013-01-01

Previous studies of the classical T Tauri star AA Tau have interpreted the UX-Orionis-like photo-polarimetric variability as being due to a warp in the inner disk caused by an inclined stellar magnetic dipole field. We test that these effects are macroscopically observable in the inclination and alignment of the disk. We use Hubble Space Telescope (HST)/STIS coronagraphic imagery to measure the V magnitude of the star for both STIS coronagraphic observations, compare these data with optical photometry in the literature, and find that, unlike other classical T Tauri stars observed in the same HST program, the disk is most robustly detected in scattered light at stellar optical minimum light. We measure the outer disk radius, 1.''15 ± 0.''10, major-axis position angle, and disk inclination and find that the inner disk, as reported in the literature, is both misinclined and misaligned with respect to the outer disk. AA Tau drives a faint jet, detected in both STIS observations and in follow-on Goddard Fabry-Perot imagery, which is also misaligned with respect to the projection of the outer disk minor axis and is poorly collimated near the star, but which can be traced 21'' from the star in data from 2005. The measured outer disk inclination, 71° ± 1°, is out of the range of inclinations suggested for stars with UX-Orionis-like variability when no grain growth has occurred in the disk. The faintness of the disk, small disk size, and detection of the star despite the high inclination all indicate that the dust disk must have experienced grain growth and settling toward the disk midplane, which we verify by comparing the observed disk with model imagery from the literature.

Cardiac magnetic resonance markers of progressive RV dilation and dysfunction after tetralogy of Fallot repair

NARCIS (Netherlands)

Wald, Rachel M.; Valente, Anne Marie; Gauvreau, Kimberlee; Babu-Narayan, Sonya V.; Assenza, Gabriele Egidy; Schreier, Jenna; Gatzoulis, Michael A.; Kilner, Philip J.; Koyak, Zeliha; Mulder, Barbara; Powell, Andrew J.; Geva, Tal

2015-01-01

Patients with repaired tetralogy of Fallot (TOF) are followed serially by cardiac magnetic resonance (CMR) for surveillance of RV dilation and dysfunction. We sought to define the prevalence of progressive RV disease and the optimal time interval between CMR evaluations. Candidates were selected

Registration of cytoplasmic male-sterile oilseed sunflower genetic stocks CMS GIG2 and CMS GIG2-RV, and fertility restoration lines RF GIG2-MAX 1631 and RF GIG2-MAX 1631-RV

Science.gov (United States)

Two cytoplasmic male-sterile (CMS) oilseed sunflower (Helianthus annuus L.) genetic stocks, CMS GIG2 (Reg. No. xxx, PI xxxx), and CMS GIG2-RV (Reg. No. xxx, PI xxxx), and corresponding fertility restoration lines RF GIG2-MAX 1631 (Reg. No. xxx, PI xxxx) and RF GIG2-MAX 1631-RV (Reg. No. xxx, PI xxx...

Cloning, overexpression, purification and preliminary X-ray analysis of a feast/famine regulatory protein (Rv2779c) from Mycobacterium tuberculosis H37Rv.

Science.gov (United States)

Dey, Abhishek; Ramachandran, Ravishankar

2014-01-01

Rv2779c from Mycobacterium tuberculosis is a feast/famine regulatory protein. This class of proteins are also known as the leucine-responsive regulatory protein/asparagine synthase C family (Lrp/AsnC) of transcriptional regulators and are known to be involved in various metabolic processes in bacteria and fungi. They contain a RAM (regulator of amino-acid metabolism) domain that is rarely found in humans and acts as the oligomerization domain. Since the oligomeric status is often linked to the particular functional role in these proteins, binding of ligands to the domain can elicit specific functional responses. Full-length Rv2779c corresponding to a molecular mass of 19.8 kDa and 179 residues was cloned and purified to homogeneity following transformation into Escherichia coli C41 (DE3) cells. Crystals were grown by vapour diffusion using the hanging-drop method. Diffraction data extending to 2.8 Å resolution were collected from a single crystal that belonged to space group P2(1)2(1)2, with unit-cell parameters a = 99.6, b = 146.0, c = 49.9 Å. Matthews coefficient (VM) calculations suggest that four molecules are present in the asymmetric unit, corresponding to a solvent content of ∼46%. Molecular-replacement calculations using the crystal structure of a homologue, Rv3291c, as the search model gave an unambiguous solution corresponding to four subunits in the asymmetric unit.

Optical veiling, disk accretion, and the evolution of T Tauri stars

International Nuclear Information System (INIS)

Hartmann, L.W.; Kenyon, S.J.

1990-01-01

High-resolution spectra of 31 K7-M1 T Tauri stars (TTs) in the Taurus-Auriga molecular cloud demonstrate that most of these objects exhibit substantial excess emission at 5200 A. Extrapolations of these data consistent with low-resolution spectrophotometry indicate that the extra emission is comparable to the stellar luminosity in many cases. If this continuum emission arises in the boundary layers of accreting disks, more than about 30 percent of all TTs may be accreting material at a rate which is sufficiently rapid to alter their evolution from standard Hayashi tracks. It is estimated that roughly 10 percent of the final stellar mass is accreted in the TT phase. This amount of material is comparable to the minimum gravitationally unstable disk mass estimated by Larson and it is speculated that the TT phase represents the final stages of disk accretion driven by gravitational instabilities. 40 refs

Observations of Hα-emission stars in the young cluster NGC 2264

International Nuclear Information System (INIS)

Rydgren, A.E.

1979-01-01

UBVRI photometry is given for a sample of 25 late-type Hα-emission stars in the young cluster NGC 2264. The stars are in the magnitude range 12< or =V<16. Some but not all appear to be T Tauri stars. The color--color diagrams support the view that the deviations from normal photospheric colors (due to ''spectral veiling'' and line emission) decrease with increasing wavelength between the U and I filters. In the (V, V-R) diagram, the Hα-emission stars lie in a well-defined pre-main-sequence band. Within this sample, there is a trend toward stronger line emission and spectral veiling with later spectral type. All of the likely legitimate T Tauri stars have inferred spectral types later than about K3. The question of cluster membership for stars in the cluster field with very small proper motions is considered

X-shooter spectroscopy of FU Tauri A

Science.gov (United States)

Stelzer, B.; Alcalá, J. M.; Scholz, A.; Natta, A.; Randich, S.; Covino, E.

2013-03-01

We have analyzed a broad-band optical and near-infrared spectrum of FU Tau A, which is a presumed young brown dwarf in the Taurus star forming region that has intrigued both theorists and observers by its overluminosity in the Hertzsprung-Russell (HR) diagram with respect to standard pre-main sequence evolutionary models. FU Tau A is brighter than any other Taurus member of the same or similar spectral type, and various phenomena (accretion, activity, binarity) have been put forth as possible explanations. The new data, obtained with the X-shooter spectrograph at the Very Large Telescope, include an unprecedented wealth of information on stellar parameters and simultaneously observed accretion and outflow indicators for FU Tau A. We present the first measurements of gravity (log g = 3.5 ± 0.5), radial velocity (RV = 22.5 ± 2.9 km s-1), rotational velocity (vsini = 20 ± 5 km s-1), and lithium equivalent width (EWLi = 430 ± 20 mÅ) for FU Tau A. From the rotational velocity and the published period we infer a disk inclination of i ≳ 50°. The lithium content is much lower than theoretically expected for such a young very low-mass object, adding another puzzling feature to this object's properties. We determine the mass accretion rate of FU Tau A from comparison of the luminosities of 20 emission lines to empirical calibrations from the literature and find a mean of log Ṁacc [M⊙/yr] = -9.9 with standard deviation σ = 0.2. The accretion rate determined independently from modeling of the excess emission in the Balmer and Paschen continua is consistent with this value. The corresponding accretion luminosity is too low to make a significant contribution to the bolometric luminosity. Strong magnetic activity affecting the stellar parameters or binarity of FU Tau A, both combined with extreme youth, may be responsible for its position in the HR diagram. The existence of an outflow in FU Tau A is demonstrated through the first detection of forbidden emission lines

Avastatud maa-alune järv võib lõpetada Darfuri kodusõja / Karin Volmer

Index Scriptorium Estoniae

Volmer, Karin

2007-01-01

Ilmunud ka: Postimees : na russkom jazõke, 23. juuli 2007, lk. 6. Teadlaste hinnangul võib Darfuri konflikti lõpetada Darfuris avastatud maa-alune järv, sest kodusõda araablastest karjakasvatajate ja põlluharijatest põliselanike vahel võib tingitud olla veepuudusest. Kaart: Darfuri maa-alune järv. Lisa: Darfuri konflikt

The Norwood procedure: in favor of the RV-PA conduit.

Science.gov (United States)

Barron, David J

2013-01-01

Evolution of the Norwood procedure has culminated in there currently being three treatment strategies available for initial management: the 'classical' Norwood (utilizing a Blalock-Taussig shunt), the Norwood with right-ventricle to pulmonary artery (RV-PA) conduit, and the 'hybrid' Norwood procedure utilizing bilateral pulmonary artery banding and ductal stenting. Each variant has its potential advantages and disadvantages, and this paper looks to examine the evidence in favor of each strategy, with emphasis on the supportive data for the RV-PA conduit. The 'classical' procedure has the benefit of the greatest accumulated surgical experience and avoids any incision into the ventricle. However, the diastolic run-off of the Blalock-Taussig shunt can cause hemodynamic instability and unpredictable coronary steal phenomenon. The RV-PA conduit has the advantage of maintaining diastolic pressure with a more stable postoperative course, but at the cost of a ventriculotomy that may have detrimental long-term sequelae. The 'hybrid' procedure has the advantage of avoiding cardiopulmonary bypass, but does not always secure coronary blood flow and has a high inter-stage morbidity and reintervention rate. The evidence shows that each technique may have its place in future management, and that treatment algorithms could emerge that direct the choice of procedure for specific patient groups. Copyright © 2013 Elsevier Inc. All rights reserved.

Radial velocity variations of photometrically quiet, chromospherically inactive Kepler stars: A link between RV jitter and photometric flicker

Energy Technology Data Exchange (ETDEWEB)

Bastien, Fabienne A.; Stassun, Keivan G.; Pepper, Joshua [Physics and Astronomy Department, Vanderbilt University, 1807 Station B, Nashville, TN 37235 (United States); Wright, Jason T. [Center for Exoplanets and Habitable Worlds, 525 Davey Laboratory, The Pennsylvania State University, University Park, PA 16803 (United States); Aigrain, Suzanne [Sub-department of Astrophysics, Department of Physics, University of Oxford, Oxford OX1 3RH (United Kingdom); Basri, Gibor [Astronomy Department, University of California, Berkeley, CA 94720 (United States); Johnson, John A. [Department of Astrophysics, California Institute of Technology, MC 249-17, Pasadena, CA 91125 (United States); Howard, Andrew W. [Institute for Astronomy, University of Hawaii, 2680 Woodlawn Drive, Honolulu, HI 96822 (United States); Walkowicz, Lucianne M. [Department of Astrophysical Sciences, Princeton University, 4 Ivy Lane, Princeton, NJ 08544 (United States)

2014-02-01

We compare stellar photometric variability, as measured from Kepler light curves by Basri et al., with measurements of radial velocity (RV) rms variations of all California Planet Search overlap stars. We newly derive rotation periods from the Kepler light curves for all of the stars in our study sample. The RV variations reported herein range from less than 4 to 135 m s{sup –1}, yet the stars all have amplitudes of photometric variability less than 3 mmag, reflecting the preference of the RV program for chromospherically 'quiet' stars. Despite the small size of our sample, we find with high statistical significance that the RV rms manifests strongly in the Fourier power spectrum of the light curve: stars that are noisier in RV have a greater number of frequency components in the light curve. We also find that spot models of the observed light curves systematically underpredict the observed RV variations by factors of ∼2-1000, likely because the low-level photometric variations in our sample are driven by processes not included in simple spot models. The stars best fit by these models tend to have simpler light curves, dominated by a single relatively high-amplitude component of variability. Finally, we demonstrate that the RV rms behavior of our sample can be explained in the context of the photometric variability evolutionary diagram introduced by Bastien et al. We use this diagram to derive the surface gravities of the stars in our sample, revealing many of them to have moved off the main sequence. More generally, we find that the stars with the largest RV rms are those that have evolved onto the 'flicker floor' sequence in that diagram, characterized by relatively low amplitude but highly complex photometric variations which grow as the stars evolve to become subgiants.

Mutation of Rv2887, a marR-like gene, confers Mycobacterium tuberculosis resistance to an imidazopyridine-based agent.

Science.gov (United States)

Winglee, Kathryn; Lun, Shichun; Pieroni, Marco; Kozikowski, Alan; Bishai, William

2015-11-01

Drug resistance is a major problem in Mycobacterium tuberculosis control, and it is critical to identify novel drug targets and new antimycobacterial compounds. We have previously identified an imidazo[1,2-a]pyridine-4-carbonitrile-based agent, MP-III-71, with strong activity against M. tuberculosis. In this study, we evaluated mechanisms of resistance to MP-III-71. We derived three independent M. tuberculosis mutants resistant to MP-III-71 and conducted whole-genome sequencing of these mutants. Loss-of-function mutations in Rv2887 were common to all three MP-III-71-resistant mutants, and we confirmed the role of Rv2887 as a gene required for MP-III-71 susceptibility using complementation. The Rv2887 protein was previously unannotated, but domain and homology analyses suggested it to be a transcriptional regulator in the MarR (multiple antibiotic resistance repressor) family, a group of proteins first identified in Escherichia coli to negatively regulate efflux pumps and other mechanisms of multidrug resistance. We found that two efflux pump inhibitors, verapamil and chlorpromazine, potentiate the action of MP-III-71 and that mutation of Rv2887 abrogates their activity. We also used transcriptome sequencing (RNA-seq) to identify genes which are differentially expressed in the presence and absence of a functional Rv2887 protein. We found that genes involved in benzoquinone and menaquinone biosynthesis were repressed by functional Rv2887. Thus, inactivating mutations of Rv2887, encoding a putative MarR-like transcriptional regulator, confer resistance to MP-III-71, an effective antimycobacterial compound that shows no cross-resistance to existing antituberculosis drugs. The mechanism of resistance of M. tuberculosis Rv2887 mutants may involve efflux pump upregulation and also drug methylation. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Archive of Digitized Analog Boomer and Minisparker Seismic Reflection Data Collected from the Alabama-Mississippi-Louisiana Shelf During Cruises Onboard the R/V Carancahua and R/V Gyre, April and July, 1981

Science.gov (United States)

Sanford, Jordan M.; Harrison, Arnell S.; Wiese, Dana S.; Flocks, James G.

2009-01-01

In April and July of 1981, the U.S. Geological Survey (USGS) conducted geophysical surveys to investigate the shallow geologic framework of the Alabama-Mississippi-Louisiana Shelf in the northern Gulf of Mexico. Work was conducted onboard the Texas A&M University R/V Carancahua and the R/V Gyre to develop a geologic understanding of the study area and to locate potential hazards related to offshore oil and gas production. While the R/V Carancahua only collected boomer data, the R/V Gyre used a 400-Joule minisparker, 3.5-kilohertz (kHz) subbottom profiler, 12-kHz precision depth recorder, and two air guns. The authors selected the minisparker data set because, unlike with the boomer data, it provided the most complete record. This report is part of a series to digitally archive the legacy analog data collected from the Mississippi-Alabama SHelf (MASH). The MASH data rescue project is a cooperative effort by the USGS and the Minerals Management Service (MMS). This report serves as an archive of high-resolution scanned Tagged Image File Format (TIFF) and Graphics Interchange Format (GIF) images of the original boomer and minisparker paper records, navigation files, trackline maps, Geographic Information System (GIS) files, cruise logs, and formal Federal Geographic Data Committee (FGDC) metadata.

The Surface of V410 Tauri

Science.gov (United States)

Rice, J. B.; Strassmeier, K. G.; Kopf, M.

2011-02-01

We present Doppler images of the weak-lined T Tauri star V410 Tau obtained with two different Doppler-imaging codes. The images are consistent and show a cool extended spot, symmetric about the pole, at a temperature approximately 750 K below the average photospheric value. Smaller cool spots are found fairly uniformly distributed at latitudes below the polar cap with temperatures about 450 K below the average photospheric temperature. Resolution on the stellar surface is limited to about 7° of arc, so structure within these spots is not visible. Also at lower latitudes are hotter features with temperatures up to 1000 K above the photosphere. A trial Doppler image using a TiO molecular feature reproduced the cool polar cap at a temperature about 100 K below the value from the atomic line images. The equatorial features, however, were not properly reproduced since Doppler imaging relies on information in the wings of lines for reconstructing equatorial features, and for V410 Tau these molecular band lines overlap. In 1993, V410 Tau had a large photometric amplitude resulting from the concentration of cool spots on the hemisphere of the star visible at phase 0°, a phenomenon known as preferred longitude. In contrast, the small photometric amplitude observed currently is due to a strong symmetric polar spot and the uniform distribution in longitude of equatorial cool and warm spots. This redistribution of surface features may be the beginning of a slow "flip-flop" for V410 Tau where spot locations alternate between preferred longitudes. Flare events linked to two of the hotter spots in the Doppler image were observed.

Stringent DDI-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.

Science.gov (United States)

Zhou, Hufeng; Rezaei, Javad; Hugo, Willy; Gao, Shangzhi; Jin, Jingjing; Fan, Mengyuan; Yong, Chern-Han; Wozniak, Michal; Wong, Limsoon

2013-01-01

H. sapiens-M. tuberculosis H37Rv protein-protein interaction (PPI) data are very important information to illuminate the infection mechanism of M. tuberculosis H37Rv. But current H. sapiens-M. tuberculosis H37Rv PPI data are very scarce. This seriously limits the study of the interaction between this important pathogen and its host H. sapiens. Computational prediction of H. sapiens-M. tuberculosis H37Rv PPIs is an important strategy to fill in the gap. Domain-domain interaction (DDI) based prediction is one of the frequently used computational approaches in predicting both intra-species and inter-species PPIs. However, the performance of DDI-based host-pathogen PPI prediction has been rather limited. We develop a stringent DDI-based prediction approach with emphasis on (i) differences between the specific domain sequences on annotated regions of proteins under the same domain ID and (ii) calculation of the interaction strength of predicted PPIs based on the interacting residues in their interaction interfaces. We compare our stringent DDI-based approach to a conventional DDI-based approach for predicting PPIs based on gold standard intra-species PPIs and coherent informative Gene Ontology terms assessment. The assessment results show that our stringent DDI-based approach achieves much better performance in predicting PPIs than the conventional approach. Using our stringent DDI-based approach, we have predicted a small set of reliable H. sapiens-M. tuberculosis H37Rv PPIs which could be very useful for a variety of related studies. We also analyze the H. sapiens-M. tuberculosis H37Rv PPIs predicted by our stringent DDI-based approach using cellular compartment distribution analysis, functional category enrichment analysis and pathway enrichment analysis. The analyses support the validity of our prediction result. Also, based on an analysis of the H. sapiens-M. tuberculosis H37Rv PPI network predicted by our stringent DDI-based approach, we have discovered some

A novel vaccine p846 encoding Rv3615c, Mtb10.4, and Rv2660c elicits robust immune response and alleviates lung injury induced by Mycobacterium infection.

Science.gov (United States)

Kong, Hongmei; Dong, Chunsheng; Xiong, Sidong

2014-01-01

Development of effective anti-tuberculosis (TB) vaccines is one of the important steps to improve control of TB. Cell-mediated immune response significantly affects the control of M. tuberculosis infection. Thus, vaccines able to elicit strong cellular immune response hold special advantages against TB. In this study, three well-defined mycobacterial antigens (Rv3615c, Mtb10.4 [Rv0228], and Rv2660c) were engineered as a novel triple-antigen fusion DNA vaccine p846. The p846 vaccine consists of a high density of CD4(+) and CD8(+) T-cell epitopes. Intramuscular immunization of p846 induced robust T cells mediated immune response comparable to that of bacillus Calmette-Guérin (BCG) vaccination but more effective than that of individual antigen vaccination. After mycobacterial challenge, p846 immunization decreased bacterial burden at least 15-fold compared with individual antigen-based vaccination. Notably, the lungs of mice immunized with p846 exhibited fewer inflammatory cell infiltrates and less damage than those of control group mice. Our data demonstrate that the potential of p846 vaccine to protect against TB and the feasibility of this design strategy for further TB vaccine development.

Imunogenicidade da cepa avirulenta RV194-2 do vírus rábico em camundongos

Directory of Open Access Journals (Sweden)

Rugimar Marcovistz

1996-12-01

Full Text Available O vírus rábico RV194-2, uma variante avirulenta da cepa CVS (Challenge Vírus Standard, produz uma infecção inaparente quando inoculado intracerebralmente em camundongos adultos. Sugerindo que a resposta imunológica do hospedeiro permite a eliminação do vírus do sistema nervoso central. Por esta razão foram estudadas a indução de interferon e a resposta imune humoral em camundongos BALB/c inoculados com vírus RV194-2. Durante a infecção, estes camundongos apresentaram elevados níveis de interferon no plasma e no cérebro com altos títulos de anticorpos neutralizantes anti-rábicos. A 2-5A sintetase. um marcador da ação dos interferons,foi também analisada no cérebro destes animais. Sua atividade, aumentou, paralelamente, á produção de interferon, demonstrando que este interferon é bioquímicamente ativo. O vírus RV194-2 também induziu, 45 dias após sua inoculação, proteção aos animais quando desafiados com a cepa virulenta CVS. Estes resultados demonstram que a cepa RV194-2possui um alto nível imunogênico.RV194-2 rabies virus, an avirulent mutant of CVS strain, induces an inapparent infection limited to the central nervous system (CNS in adult mice inoculated intracerebrally. This fact suggest that immune response of the host is able to eliminate the virus in CNS. For this reason, we have studied the induction of interferon and the humoral immune responses in BALB/c mice after RV194-2 inoculation. These mice presented high levels of interferon in the plasma and in the brain, with elevated levels of neutralizing antirabies antibodies. The 2-5A synthetase, an enzyme marker of interferon action, was analyzed in the brain of inoculated animals. Its enhancement in parallel to the interferon production in the brain, showed biochemical evidence that this interferon is active. Forty five days after RV194-2 virus inoculation, mice were protected against a challenge with the CVS virulent strain. The results presented

Structure of Mycobacterium tuberculosis Rv2714, a representative of a duplicated gene family in Actinobacteria

International Nuclear Information System (INIS)

Graña, Martin; Bellinzoni, Marco; Miras, Isabelle; Fiez-Vandal, Cedric; Haouz, Ahmed; Shepard, William; Buschiazzo, Alejandro; Alzari, Pedro M.

2009-01-01

The crystal structure of Rv2714, a protein of unknown function from M. tuberculosis, has been determined at 2.6 Å resolution using single-wavelength anomalous diffraction methods. The gene Rv2714 from Mycobacterium tuberculosis, which codes for a hypothetical protein of unknown function, is a representative member of a gene family that is largely confined to the order Actinomycetales of Actinobacteria. Sequence analysis indicates the presence of two paralogous genes in most mycobacterial genomes and suggests that gene duplication was an ancient event in bacterial evolution. The crystal structure of Rv2714 has been determined at 2.6 Å resolution, revealing a trimer in which the topology of the protomer core is similar to that observed in a functionally diverse set of enzymes, including purine nucleoside phosphorylases, some carboxypeptidases, bacterial peptidyl-tRNA hydrolases and even the plastidic form of an intron splicing factor. However, some structural elements, such as a β-hairpin insertion involved in protein oligomerization and a C-terminal α-helical domain that serves as a lid to the putative substrate-binding (or ligand-binding) site, are only found in Rv2714 bacterial homologues and represent specific signatures of this protein family

Structure of Mycobacterium tuberculosis Rv2714, a representative of a duplicated gene family in Actinobacteria

Energy Technology Data Exchange (ETDEWEB)

Graña, Martin; Bellinzoni, Marco [Institut Pasteur, Unité de Biochimie Structurale, URA CNRS 2185, 25 Rue du Dr Roux, 75724 Paris (France); Miras, Isabelle; Fiez-Vandal, Cedric; Haouz, Ahmed; Shepard, William [Institut Pasteur, Plate-forme de Cristallogenèse et Diffraction des Rayons X, 25 Rue du Dr Roux, 75724 Paris (France); Buschiazzo, Alejandro; Alzari, Pedro M., E-mail: alzari@pasteur.fr [Institut Pasteur, Unité de Biochimie Structurale, URA CNRS 2185, 25 Rue du Dr Roux, 75724 Paris (France)

2009-10-01

The crystal structure of Rv2714, a protein of unknown function from M. tuberculosis, has been determined at 2.6 Å resolution using single-wavelength anomalous diffraction methods. The gene Rv2714 from Mycobacterium tuberculosis, which codes for a hypothetical protein of unknown function, is a representative member of a gene family that is largely confined to the order Actinomycetales of Actinobacteria. Sequence analysis indicates the presence of two paralogous genes in most mycobacterial genomes and suggests that gene duplication was an ancient event in bacterial evolution. The crystal structure of Rv2714 has been determined at 2.6 Å resolution, revealing a trimer in which the topology of the protomer core is similar to that observed in a functionally diverse set of enzymes, including purine nucleoside phosphorylases, some carboxypeptidases, bacterial peptidyl-tRNA hydrolases and even the plastidic form of an intron splicing factor. However, some structural elements, such as a β-hairpin insertion involved in protein oligomerization and a C-terminal α-helical domain that serves as a lid to the putative substrate-binding (or ligand-binding) site, are only found in Rv2714 bacterial homologues and represent specific signatures of this protein family.

Karakterisasi Klon Rekombinan pGEMT-Rv1984c Sebagai Antigen untuk Imunodiagnostik Tuberkulosis Laten

OpenAIRE

Baharaeni, Wa Ode

2017-01-01

The research about "Characterization of Recombinant Clones pGEMT-Rv1984c as Antigen for Latent Tuberculosis Immunodiagnostic" has been done. Rv1984c gene is the gene that is owned by Mycobacterium tuberculosis, and encodes a protein formation CFP21 which serve as antigen candidate for latent tuberculosis immunodiagnostic through gene cloning. The result of transformation of gene cloning still has the possibility of failure of the process of transformation and ligation, so we need a character...

Identification of novel adhesins of M. tuberculosis H37Rv using integrated approach of multiple computational algorithms and experimental analysis.

Directory of Open Access Journals (Sweden)

Sanjiv Kumar

Full Text Available Pathogenic bacteria interacting with eukaryotic host express adhesins on their surface. These adhesins aid in bacterial attachment to the host cell receptors during colonization. A few adhesins such as Heparin binding hemagglutinin adhesin (HBHA, Apa, Malate Synthase of M. tuberculosis have been identified using specific experimental interaction models based on the biological knowledge of the pathogen. In the present work, we carried out computational screening for adhesins of M. tuberculosis. We used an integrated computational approach using SPAAN for predicting adhesins, PSORTb, SubLoc and LocTree for extracellular localization, and BLAST for verifying non-similarity to human proteins. These steps are among the first of reverse vaccinology. Multiple claims and attacks from different algorithms were processed through argumentative approach. Additional filtration criteria included selection for proteins with low molecular weights and absence of literature reports. We examined binding potential of the selected proteins using an image based ELISA. The protein Rv2599 (membrane protein binds to human fibronectin, laminin and collagen. Rv3717 (N-acetylmuramoyl-L-alanine amidase and Rv0309 (L,D-transpeptidase bind to fibronectin and laminin. We report Rv2599 (membrane protein, Rv0309 and Rv3717 as novel adhesins of M. tuberculosis H37Rv. Our results expand the number of known adhesins of M. tuberculosis and suggest their regulated expression in different stages.

Stringent homology-based prediction of H. sapiens-M. tuberculosis H37Rv protein-protein interactions.

Science.gov (United States)

Zhou, Hufeng; Gao, Shangzhi; Nguyen, Nam Ninh; Fan, Mengyuan; Jin, Jingjing; Liu, Bing; Zhao, Liang; Xiong, Geng; Tan, Min; Li, Shijun; Wong, Limsoon

2014-04-08

H. sapiens-M. tuberculosis H37Rv protein-protein interaction (PPI) data are essential for understanding the infection mechanism of the formidable pathogen M. tuberculosis H37Rv. Computational prediction is an important strategy to fill the gap in experimental H. sapiens-M. tuberculosis H37Rv PPI data. Homology-based prediction is frequently used in predicting both intra-species and inter-species PPIs. However, some limitations are not properly resolved in several published works that predict eukaryote-prokaryote inter-species PPIs using intra-species template PPIs. We develop a stringent homology-based prediction approach by taking into account (i) differences between eukaryotic and prokaryotic proteins and (ii) differences between inter-species and intra-species PPI interfaces. We compare our stringent homology-based approach to a conventional homology-based approach for predicting host-pathogen PPIs, based on cellular compartment distribution analysis, disease gene list enrichment analysis, pathway enrichment analysis and functional category enrichment analysis. These analyses support the validity of our prediction result, and clearly show that our approach has better performance in predicting H. sapiens-M. tuberculosis H37Rv PPIs. Using our stringent homology-based approach, we have predicted a set of highly plausible H. sapiens-M. tuberculosis H37Rv PPIs which might be useful for many of related studies. Based on our analysis of the H. sapiens-M. tuberculosis H37Rv PPI network predicted by our stringent homology-based approach, we have discovered several interesting properties which are reported here for the first time. We find that both host proteins and pathogen proteins involved in the host-pathogen PPIs tend to be hubs in their own intra-species PPI network. Also, both host and pathogen proteins involved in host-pathogen PPIs tend to have longer primary sequence, tend to have more domains, tend to be more hydrophilic, etc. And the protein domains from both

Forkhead-associated (FHA) Domain Containing ABC Transporter Rv1747 Is Positively Regulated by Ser/Thr Phosphorylation in Mycobacterium tuberculosis*

Science.gov (United States)

Spivey, Vicky L.; Molle, Virginie; Whalan, Rachael H.; Rodgers, Angela; Leiba, Jade; Stach, Lasse; Walker, K. Barry; Smerdon, Stephen J.; Buxton, Roger S.

2011-01-01

One major signaling method employed by Mycobacterium tuberculosis, the causative agent of tuberculosis, is through reversible phosphorylation of proteins mediated by protein kinases and phosphatases. This study concerns one of these enzymes, the serine/threonine protein kinase PknF, that is encoded in an operon with Rv1747, an ABC transporter that is necessary for growth of M. tuberculosis in vivo and contains two forkhead-associated (FHA) domains. FHA domains are phosphopeptide recognition motifs that specifically recognize phosphothreonine-containing epitopes. Experiments to determine how PknF regulates the function of Rv1747 demonstrated that phosphorylation occurs on two specific threonine residues, Thr-150 and Thr-208. To determine the in vivo consequences of phosphorylation, infection experiments were performed in bone marrow-derived macrophages and in mice using threonine-to-alanine mutants of Rv1747 that prevent specific phosphorylation and revealed that phosphorylation positively modulates Rv1747 function in vivo. The role of the FHA domains in this regulation was further demonstrated by isothermal titration calorimetry, using peptides containing both phosphothreonine residues. FHA-1 domain mutation resulted in attenuation in macrophages highlighting the critical role of this domain in Rv1747 function. A mutant deleted for pknF did not, however, have a growth phenotype in an infection, suggesting that other kinases can fulfill its role when it is absent. This study provides the first information on the molecular mechanism(s) regulating Rv1747 through PknF-dependent phosphorylation but also indicates that phosphorylation activates Rv1747, which may have important consequences in regulating growth of M. tuberculosis. PMID:21622570

X-ray stars observed in LAMOST spectral survey

Science.gov (United States)

Lu, Hong-peng; Zhang, Li-yun; Han, Xianming L.; Shi, Jianrong

2018-05-01

X-ray stars have been studied since the beginning of X-ray astronomy. Investigating and studying the chromospheric activity from X-ray stellar optical spectra is highly significant in providing insights into stellar magnetic activity. The big data of LAMOST survey provides an opportunity for researching stellar optical spectroscopic properties of X-ray stars. We inferred the physical properties of X-ray stellar sources from the analysis of LAMOST spectra. First, we cross-matched the X-ray stellar catalogue (12254 X-ray stars) from ARXA with LAMOST data release 3 (DR3), and obtained 984 good spectra from 713 X-ray sources. We then visually inspected and assigned spectral type to each spectrum and calculated the equivalent width (EW) of Hα line using the Hammer spectral typing facility. Based on the EW of Hα line, we found 203 spectra of 145 X-ray sources with Hα emission above the continuum. For these spectra we also measured the EWs of Hβ, Hγ, Hδ and Ca ii IRT lines of these spectra. After removing novae, planetary nebulae and OB-type stars, we found there are 127 X-ray late-type stars with Hα line emission. By using our spectra and results from the literature, we found 53 X-ray stars showing Hα variability; these objects are Classical T Tauri stars (CTTs), cataclysmic variables (CVs) or chromospheric activity stars. We also found 18 X-ray stars showing obvious emissions in the Ca ii IRT lines. Of the 18 X-ray stars, 16 are CTTs and 2 are CVs. Finally, we discussed the relationships between the EW of Hα line and X-ray flux.

The 1600 Å Emission Bump in Protoplanetary Disks: A Spectral Signature of H2O Dissociation

Science.gov (United States)

France, Kevin; Roueff, Evelyne; Abgrall, Hervé

2017-08-01

The FUV continuum spectrum of many accreting pre-main sequence stars, Classical T Tauri Stars (CTTSs), does not continue smoothly from the well-studied Balmer continuum emission in the NUV, suggesting that additional processes contribute to the short-wavelength emission in these objects. The most notable spectral feature in the FUV continuum of some CTTSs is a broad emission approximately centered at 1600 Å, which has been referred to as the “1600 Å Bump.” The origin of this feature remains unclear. In an effort to better understand the molecular properties of planet-forming disks and the UV spectral properties of accreting protostars, we have assembled archival FUV spectra of 37 disk-hosting systems observed by the Hubble Space Telescope-Cosmic Origins Spectrograph. Clear 1600 Å Bump emission is observed above the smooth, underlying 1100-1800 Å continuum spectrum in 19/37 Classical T Tauri disks in the HST-COS sample, with the detection rate in transition disks (8/8) being much higher than that in primordial or non-transition sources (11/29). We describe a spectral deconvolution analysis to separate the Bump (spanning 1490-1690 Å) from the underlying FUV continuum, finding an average Bump luminosity L(Bump) ≈ 7 × 1029 erg s-1. Parameterizing the Bump with a combination of Gaussian and polynomial components, we find that the 1600 Å Bump is characterized by a peak wavelength λ o = 1598.6 ± 3.3 Å, with FWHM = 35.8 ± 19.1 Å. Contrary to previous studies, we find that this feature is inconsistent with models of H2 excited by electron -impact. We show that this Bump makes up between 5%-50% of the total FUV continuum emission in the 1490-1690 Å band and emits roughly 10%-80% of the total fluorescent H2 luminosity for stars with well-defined Bump features. Energetically, this suggests that the carrier of the 1600 Å Bump emission is powered by Lyα photons. We argue that the most likely mechanism is Lyα-driven dissociation of H2O in the inner disk, r �

Benthic data from bottom grabs from Prince William Sound in support of Exxon Valdez Oil Spill Restoration Project from the R/V DAVIDSON and R/V BIG VALLEY from 03 July 1990 to 25 June of 1991 (NODC Accession 0000447)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic samples and other data were collected from the R/V DAVIDSON and R/V BIG VALLEY from the Prince William Sound from 03 July 1990 to 25 June of 1991 . Data were...

The development of remote controlled linear guide and mast vertical guide of repair robot for RV head CRDM nozzle region in NPP

International Nuclear Information System (INIS)

Kim, Seung Ho; Seo, Yong Chil; Shin, Ho Cheol; Lee, Sung Uk; Jung, Kyung Min

2006-11-01

Reactor vessel which is core instrument in NPP must maintains integrity in the high temperature, high pressure and high radiation environment. Therefore RV must be inspected periodically. If there is defect, the RV must be repaired. A remote controlled linear guide and a vertical guide were developed for a welding repair robot of the RV head CRDM nozzle region. During inspection/maintenance, the RV head is placed RV head storage which is a double circled concrete structure. A linear guide was developed to provide a linear motion to the repair robot, which locates the robot under the RV head. The linear guide also provides a strong support to the robot not to overturn when the robot repairs the RV head. The robot needs lifting about 2m to reach the CRDM nozzle, therefore a vertical guide was developed. For easy traveling, the linear guide is designed 4 parts and the vertical guide is designed 3 parts. A control system was developed to remotely control the guide system which is composed of a connecter box, cables, control box, a computer and a control program. A monitoring system was developed to monitor operation of the guide system

The development of remote controlled linear guide and mast vertical guide of repair robot for RV head CRDM nozzle region in NPP

Energy Technology Data Exchange (ETDEWEB)

Kim, Seung Ho; Seo, Yong Chil; Shin, Ho Cheol; Lee, Sung Uk; Jung, Kyung Min

2006-11-15

Reactor vessel which is core instrument in NPP must maintains integrity in the high temperature, high pressure and high radiation environment. Therefore RV must be inspected periodically. If there is defect, the RV must be repaired. A remote controlled linear guide and a vertical guide were developed for a welding repair robot of the RV head CRDM nozzle region. During inspection/maintenance, the RV head is placed RV head storage which is a double circled concrete structure. A linear guide was developed to provide a linear motion to the repair robot, which locates the robot under the RV head. The linear guide also provides a strong support to the robot not to overturn when the robot repairs the RV head. The robot needs lifting about 2m to reach the CRDM nozzle, therefore a vertical guide was developed. For easy traveling, the linear guide is designed 4 parts and the vertical guide is designed 3 parts. A control system was developed to remotely control the guide system which is composed of a connecter box, cables, control box, a computer and a control program. A monitoring system was developed to monitor operation of the guide system.

Performances of cutting fluids in turning. Vegetable based oil - RV

DEFF Research Database (Denmark)

Axinte, Dragos Aurelian; Belluco, Walter

1999-01-01

Scope of the present measurement campaign is the evaluation of the cutting fluid performance. The report presents the standard routine and the results obtained when turning stainless steel and brass with a commercial vegetable based oil called RV. The methods were developed to be applicable...

MAGNETIC FIELD MEASUREMENTS OF T TAURI STARS IN THE ORION NEBULA CLUSTER

International Nuclear Information System (INIS)

Hao Yang; Johns-Krull, Christopher M.

2011-01-01

We present an analysis of high-resolution (R ∼ 50, 000) infrared K-band echelle spectra of 14 T Tauri stars (TTSs) in the Orion Nebula Cluster. We model Zeeman broadening in three magnetically sensitive Ti I lines near 2.2 μm and consistently detect kilogauss-level magnetic fields in the stellar photospheres. The data are consistent in each case with the entire stellar surface being covered with magnetic fields, suggesting that magnetic pressure likely dominates over gas pressure in the photospheres of these stars. These very strong magnetic fields might themselves be responsible for the underproduction of X-ray emission of TTSs relative to what is expected based on main-sequence star calibrations. We combine these results with previous measurements of 14 stars in Taurus and 5 stars in the TW Hydrae association to study the potential variation of magnetic field properties during the first 10 million years of stellar evolution, finding a steady decline in total magnetic flux with age.

Nutrients and physical data from the R/V Thomas Washington and the R/V Oshoru Maru using bottle and CTD casts as part of the Inner Shelf Transport and Recycling (ISHTAR) project from 12 June 1986 to 19 October 1988 (NODC Accession 0000333)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Nutrients and physical data were collected from the R/V THOMAS WASHINGTON and R/V OSHORU MARU from June 12, 1986 to October 19, 1988. Data were submitted by...

The 1600 Å Emission Bump in Protoplanetary Disks: A Spectral Signature of H{sub 2}O Dissociation

Energy Technology Data Exchange (ETDEWEB)

France, Kevin [Laboratory for Atmospheric and Space Physics, University of Colorado, 600 UCB, Boulder, CO 80309 (United States); Roueff, Evelyne; Abgrall, Hervé, E-mail: kevin.france@colorado.edu [LERMA, Observatoire de Paris, PSL Research University, CNRS, Sorbonne Universités, UPMC Univ. Paris 06, F-92190, Meudon (France)

2017-08-01

The FUV continuum spectrum of many accreting pre-main sequence stars, Classical T Tauri Stars (CTTSs), does not continue smoothly from the well-studied Balmer continuum emission in the NUV, suggesting that additional processes contribute to the short-wavelength emission in these objects. The most notable spectral feature in the FUV continuum of some CTTSs is a broad emission approximately centered at 1600 Å, which has been referred to as the “1600 Å Bump.” The origin of this feature remains unclear. In an effort to better understand the molecular properties of planet-forming disks and the UV spectral properties of accreting protostars, we have assembled archival FUV spectra of 37 disk-hosting systems observed by the Hubble Space Telescope -Cosmic Origins Spectrograph. Clear 1600 Å Bump emission is observed above the smooth, underlying 1100–1800 Å continuum spectrum in 19/37 Classical T Tauri disks in the HST -COS sample, with the detection rate in transition disks (8/8) being much higher than that in primordial or non-transition sources (11/29). We describe a spectral deconvolution analysis to separate the Bump (spanning 1490–1690 Å) from the underlying FUV continuum, finding an average Bump luminosity L (Bump) ≈ 7 × 10{sup 29} erg s{sup −1}. Parameterizing the Bump with a combination of Gaussian and polynomial components, we find that the 1600 Å Bump is characterized by a peak wavelength λ {sub o} = 1598.6 ± 3.3 Å, with FWHM = 35.8 ± 19.1 Å. Contrary to previous studies, we find that this feature is inconsistent with models of H{sub 2} excited by electron -impact. We show that this Bump makes up between 5%–50% of the total FUV continuum emission in the 1490–1690 Å band and emits roughly 10%–80% of the total fluorescent H{sub 2} luminosity for stars with well-defined Bump features. Energetically, this suggests that the carrier of the 1600 Å Bump emission is powered by Ly α photons. We argue that the most likely mechanism

Novel mechanism of gene regulation: the protein Rv1222 of Mycobacterium tuberculosis inhibits transcription by anchoring the RNA polymerase onto DNA.

Science.gov (United States)

Rudra, Paulami; Prajapati, Ranjit Kumar; Banerjee, Rajdeep; Sengupta, Shreya; Mukhopadhyay, Jayanta

2015-07-13

We propose a novel mechanism of gene regulation in Mycobacterium tuberculosis where the protein Rv1222 inhibits transcription by anchoring RNA polymerase (RNAP) onto DNA. In contrast to our existing knowledge that transcriptional repressors function either by binding to DNA at specific sequences or by binding to RNAP, we show that Rv1222-mediated transcription inhibition requires simultaneous binding of the protein to both RNAP and DNA. We demonstrate that the positively charged C-terminus tail of Rv1222 is responsible for anchoring RNAP on DNA, hence the protein slows down the movement of RNAP along the DNA during transcription elongation. The interaction between Rv1222 and DNA is electrostatic, thus the protein could inhibit transcription from any gene. As Rv1222 slows down the RNA synthesis, upon expression of the protein in Mycobacterium smegmatis or Escherichia coli, the growth rate of the bacteria is severely impaired. The protein does not possess any significant affinity for DNA polymerase, thus, is unable to inhibit DNA synthesis. The proposed mechanism by which Rv1222 inhibits transcription reveals a new repertoire of prokaryotic gene regulation. © Crown copyright 2015.

A functional role of Rv1738 in Mycobacterium tuberculosis persistence suggested by racemic protein crystallography.

Science.gov (United States)

Bunker, Richard D; Mandal, Kalyaneswar; Bashiri, Ghader; Chaston, Jessica J; Pentelute, Bradley L; Lott, J Shaun; Kent, Stephen B H; Baker, Edward N

2015-04-07

Protein 3D structure can be a powerful predictor of function, but it often faces a critical roadblock at the crystallization step. Rv1738, a protein from Mycobacterium tuberculosis that is strongly implicated in the onset of nonreplicating persistence, and thereby latent tuberculosis, resisted extensive attempts at crystallization. Chemical synthesis of the L- and D-enantiomeric forms of Rv1738 enabled facile crystallization of the D/L-racemic mixture. The structure was solved by an ab initio approach that took advantage of the quantized phases characteristic of diffraction by centrosymmetric crystals. The structure, containing L- and D-dimers in a centrosymmetric space group, revealed unexpected homology with bacterial hibernation-promoting factors that bind to ribosomes and suppress translation. This suggests that the functional role of Rv1738 is to contribute to the shutdown of ribosomal protein synthesis during the onset of nonreplicating persistence of M. tuberculosis.

Ostreococcus tauri Luminescent Reporter Lines as Biosensors for Detecting Pollution From Copper-Mine Tailing Effluents in Coastal Environments

Directory of Open Access Journals (Sweden)

Carlos Henríquez-Castillo

2018-05-01

Full Text Available Phytoplankton cells are excellent biosensors for environmental monitoring and toxicity assessments in different natural systems. Green algae, in particular, appear to be more responsive to copper (Cu disturbances. This is interesting considering that Cu pollution in coastal environments has increased over the last century, with enormous repercussions to marine ecosystems. Unfortunately, no high-throughput method exists for the environmental monitoring of Cu toxicity in seawater. To assess potential uses as biosensors of Cu pollution, high-throughput screening was performed on five luminescence reporter lines constructed in the green algae Ostreococcus tauri RCC745. The reporter line expressing the iron storage ferritin protein fused to luciferase (Fer-Luc was the most sensitive, responding to Cu concentrations in the μM range. Fer-Luc was also the most sensitive reporter line for detecting toxicity in mining-derived polluted seawater predominantly contaminated by soluble Cu. Nevertheless, the Cyclin-Dependent-Kinase A (CDKA reporter was most suitable for detecting the toxicity of copper-mine tailing effluents containing other metals (e.g., iron. These results highlight that Ostreococcus biosensors can serve as a reliable, inexpensive, and automated, high-throughput laboratory approach for performing seawater analyses of coastal areas subjected to metal disturbances. When challenged with Cu, O. tauri not only evidenced a rapid, transcriptional response for the tested genes, but also showed changes in a broad range of genes, especially as related to the stress response. Overall, the obtained results reinforce that a single biosensor is insufficient when dealing with complex mixtures of toxic compounds in natural environments.

The ORF59 DNA polymerase processivity factor homologs of Old World primate RV2 rhadinoviruses are highly conserved nuclear antigens expressed in differentiated epithelium in infected macaques

Directory of Open Access Journals (Sweden)

Burnside Kellie L

2009-11-01

Full Text Available Abstract Background ORF59 DNA polymerase processivity factor of the human rhadinovirus, Kaposi's sarcoma-associated herpesvirus (KSHV, is required for efficient copying of the genome during virus replication. KSHV ORF59 is antigenic in the infected host and is used as a marker for virus activation and replication. Results We cloned, sequenced and expressed the genes encoding related ORF59 proteins from the RV1 rhadinovirus homologs of KSHV from chimpanzee (PtrRV1 and three species of macaques (RFHVMm, RFHVMn and RFHVMf, and have compared them with ORF59 proteins obtained from members of the more distantly-related RV2 rhadinovirus lineage infecting the same non-human primate species (PtrRV2, RRV, MneRV2, and MfaRV2, respectively. We found that ORF59 homologs of the RV1 and RV2 Old World primate rhadinoviruses are highly conserved with distinct phylogenetic clustering of the two rhadinovirus lineages. RV1 and RV2 ORF59 C-terminal domains exhibit a strong lineage-specific conservation. Rabbit antiserum was developed against a C-terminal polypeptide that is highly conserved between the macaque RV2 ORF59 sequences. This anti-serum showed strong reactivity towards ORF59 encoded by the macaque RV2 rhadinoviruses, RRV (rhesus and MneRV2 (pig-tail, with no cross reaction to human or macaque RV1 ORF59 proteins. Using this antiserum and RT-qPCR, we determined that RRV ORF59 is expressed early after permissive infection of both rhesus primary fetal fibroblasts and African green monkey kidney epithelial cells (Vero in vitro. RRV- and MneRV2-infected foci showed strong nuclear expression of ORF59 that correlated with production of infectious progeny virus. Immunohistochemical studies of an MneRV2-infected macaque revealed strong nuclear expression of ORF59 in infected cells within the differentiating layer of epidermis corroborating previous observations that differentiated epithelial cells are permissive for replication of KSHV-like rhadinoviruses

Integrity evaluation of Alloy 600 RV head penetration tubes in Korean PWR plants

International Nuclear Information System (INIS)

Kang, Young Hwan; Park, Sung Ho; Hong, Sung Yull; Choi, Kwang Hee

1995-01-01

The structural integrity assessment of Alloy 600 RV head penetration tubes has been an important issue for the economical and reliable operation of power plants. In this paper, an overview of the integrity evaluation program for the RV head penetration tubes in Korean nuclear power plants is presented. Since the crack growth mechanism of the penetration tube is due to the primary water stress corrosion cracking (PWSCC) which is mainly related to the stress at the tube, the present paper consists of three primary activities: the stress evaluation, the flaw evaluation, and data generation through material and mechanical tests. (author). 5 refs, 2 figs, 1 tab

The embedded young stars in the Taurus-Auriga molecular cloud. I - Models for spectral energy distributions

Science.gov (United States)

Kenyon, Scott J.; Calvet, Nuria; Hartmann, Lee

1993-01-01

We describe radiative transfer calculations of infalling, dusty envelopes surrounding pre-main-sequence stars and use these models to derive physical properties for a sample of 21 heavily reddened young stars in the Taurus-Auriga molecular cloud. The density distributions needed to match the FIR peaks in the spectral energy distributions of these embedded sources suggest mass infall rates similar to those predicted for simple thermally supported clouds with temperatures about 10 K. Unless the dust opacities are badly in error, our models require substantial departures from spherical symmetry in the envelopes of all sources. These flattened envelopes may be produced by a combination of rotation and cavities excavated by bipolar flows. The rotating infall models of Terebey et al. (1984) models indicate a centrifugal radius of about 70 AU for many objects if rotation is the only important physical effect, and this radius is reasonably consistent with typical estimates for the sizes of circumstellar disks around T Tauri stars.

Mycothiol acetyltransferase (Rv0819) of Mycobacterium tuberculosis is a potential biomarker for direct diagnosis of tuberculosis using patient serum specimens.

Science.gov (United States)

Zeitoun, H; Bahey-El-Din, M; Kassem, M A; Aboushleib, H M

2017-12-01

Mycobacterium tuberculosis infection constitutes a global threat that results in significant morbidity and mortality worldwide. Efficient and early diagnosis of tuberculosis (TB) is of paramount importance for successful treatment. The aim of the current study is to investigate the mycobacterial mycothiol acetyltransferase Rv0819 as a potential novel biomarker for the diagnosis of active TB infection. The gene encoding Rv0819 was cloned and successfully expressed in Escherichia coli. The recombinant Rv0819 was purified using metal affinity chromatography and was used to raise murine polyclonal antibodies against Rv0819. The raised antibodies were employed for direct detection of Rv0819 in patient serum samples using dot blot assay and competitive enzyme-linked immunosorbent assay (ELISA). Serum samples were obtained from 68 confirmed new TB patients and 35 healthy volunteers as negative controls. The dot blot assay showed sensitivity of 64·7% and specificity of 100%, whereas the competitive ELISA assay showed lower sensitivity (54·4%) and specificity (88·57%). The overall sensitivity of the combined results of the two tests was found to be 89·7%. Overall, the mycobacterial Rv0819 is a potential TB serum biomarker that can be exploited, in combination with other TB biomarkers, for efficient and reliable diagnosis of active TB infection. The early and accurate diagnosis of tuberculosis infection is of paramount importance for initiating treatment and avoiding clinical complications. Most current diagnostic tests have poor sensitivity and/or specificity and in many cases they are too expensive for routine diagnostic testing in resource-limited settings. In the current study, we examined a novel mycobacterial serum biomarker, namely mycothiol acetyltransferase Rv0819. The antigen was detectable in serum specimens of a significant number of tuberculosis patients. This article proves the importance of Rv0819 and paves the way towards its future use as a useful

Investigations of High Resolution Imaging through the Earth’s Atmosphere Using Speckle Interferometry.

Science.gov (United States)

1987-03-15

Jeffreys, W. H. 1980. A.J., 85 177 - 1982, Asir. Ap., 115. 253. . 1981AJ..86 149 Bonneau. D..and Lebeyne. A . 1973.4 p. J. (Letters. 181. LI. Karovska . M...supergiant and the nearby companion recently proposed by Karovska et al. (1986). 4 65 ’ A ,-"’ A V.. -Y U . ....WW WVWV 2 Imaging Technique The WSA...91-96. 9 Nisenson,P., R.V. Stachnik, M. Karovska , and R. Noyes (1985). A new optical source associated with T Tauri. Astrophs. J. 297, L17-L20

Identification of Rv0222 from RD4 as a novel serodiagnostic target for tuberculosis

DEFF Research Database (Denmark)

Rosenkrands, Ida; Aagaard, Claus; Weldingh, Karin

2008-01-01

tuberculosis patients and healthy controls led to identification of Rv0222 as the most promising serodiagnostic antigen. Recognition of the Rv0222 was compared with the 38 kDa protein and a fusion protein of the RD1 proteins ESAT-6 and CFP10 in a serum panel from pulmonary tuberculosis (TB) patients from......Forty-seven Mycobacterium tuberculosis genes from the 'regions of difference' RD2-7, RD9-13 and RD15 were cloned and expressed, and the purified recombinant proteins were screened for their serodiagnostic potential. Evaluation of six selected proteins in serum samples from Danish resident...

SPECTROPOLARIMETRY OF THE CLASSICAL T TAURI STAR BP TAU

International Nuclear Information System (INIS)

Chen, Wei; Johns-Krull, Christopher M.

2013-01-01

We implement a least-squares deconvolution (LSD) code to study magnetic fields on cool stars. We first apply our code to high-resolution optical echelle spectra of 53 Cam (a magnetic Ap star) and three well-studied cool stars (Arcturus, 61 Cyg A, and ξ Boo A) as well as the Sun (by observing the asteroid Vesta) as tests of the code and the instrumentation. Our analysis is based on several hundred photospheric lines spanning the wavelength range 5000 Å to 9000 Å. We then apply our LSD code to six nights of data on the Classical T Tauri Star BP Tau. A maximum longitudinal field of 370 ± 80 G is detected from the photospheric lines on BP Tau. A 1.8 kG dipole tilted at 129° with respect to the rotation axis and a 1.4 kG octupole tilted at 104° with respect to the rotation axis, both with a filling factor of 0.25, best fit our LSD Stokes V profiles. Measurements of several emission lines (He I 5876 Å, Ca II 8498 Å, and 8542 Å) show the presence of strong magnetic fields in the line formation regions of these lines, which are believed to be the base of the accretion footpoints. The field strength measured from these lines shows night-to-night variability consistent with rotation of the star

SPECTROPOLARIMETRY OF THE CLASSICAL T TAURI STAR BP TAU

Energy Technology Data Exchange (ETDEWEB)

Chen, Wei; Johns-Krull, Christopher M., E-mail: wc2@rice.edu, E-mail: cmj@rice.edu [Department of Physics and Astronomy, Rice University, Houston, TX 77005 (United States)

2013-10-20

We implement a least-squares deconvolution (LSD) code to study magnetic fields on cool stars. We first apply our code to high-resolution optical echelle spectra of 53 Cam (a magnetic Ap star) and three well-studied cool stars (Arcturus, 61 Cyg A, and ξ Boo A) as well as the Sun (by observing the asteroid Vesta) as tests of the code and the instrumentation. Our analysis is based on several hundred photospheric lines spanning the wavelength range 5000 Å to 9000 Å. We then apply our LSD code to six nights of data on the Classical T Tauri Star BP Tau. A maximum longitudinal field of 370 ± 80 G is detected from the photospheric lines on BP Tau. A 1.8 kG dipole tilted at 129° with respect to the rotation axis and a 1.4 kG octupole tilted at 104° with respect to the rotation axis, both with a filling factor of 0.25, best fit our LSD Stokes V profiles. Measurements of several emission lines (He I 5876 Å, Ca II 8498 Å, and 8542 Å) show the presence of strong magnetic fields in the line formation regions of these lines, which are believed to be the base of the accretion footpoints. The field strength measured from these lines shows night-to-night variability consistent with rotation of the star.

Det Digitale Nærvær

DEFF Research Database (Denmark)

Heilesen, Simon

Computer-medieret kommunikation (CMC – via intranet- og internet, ”allestedsnærværende computing” mm. ), er grundlaget for det informations- og videnssamfund, der begynder at tage form i disse år. CMC er blevet kolossalt udbredt de seneste 10 – 15 år og har forandret den måde vi udsender og søger...... information, kommunikerer med hinanden både privat og i organisationer, samarbejder, underviser og tilegner os viden. Denne bog går tæt på tre udvalgte områder inden for den computer-medierede kommunikation: · Videndeling i formelle og uformelle organisationer, · Netbaseret samarbejde og læring, · Design af...

Further observations of the lambda 10830 He line in stars and their significance as a measure of stellar activity

International Nuclear Information System (INIS)

Zirin, H.

1975-11-01

Measurements of the lambda 10830 He line in 198 stars are given along with data on other features in that spectral range. Nearly 80% of all G and K stars show some lambda 10830; of these, half are variable and 1/4 show emission. It was confirmed that lambda 10830 is not found in M stars, is weak in F stars, and is particularly strong in close binaries. The line is found in emission in extremely late M and S stars, along with P gamma, but P gamma is not in emission in G and K stars with lambda 10830 emissions. Variable He emission and Ti I emission are found in the RV Tauri variables R Scuti and U Mon. In R Aqr the Fe XIII coronal line lambda 10747 and a line at lambda 11012, which may be singlet He or La II, are found, as well as lambda 10830 and P gamma. The nature of coronas or hot chromospheres in the various stars is discussed. It was concluded that the lambda 10830 intensity must be more or less proportional to the energy deposited in the chromosphere corona by non-thermal processes

Crystal Structure of Mycobacterium tuberculosis H37Rv AldR (Rv2779c), a Regulator of the ald Gene: DNA BINDING AND IDENTIFICATION OF SMALL MOLECULE INHIBITORS.

Science.gov (United States)

Dey, Abhishek; Shree, Sonal; Pandey, Sarvesh Kumar; Tripathi, Rama Pati; Ramachandran, Ravishankar

2016-06-03

Here we report the crystal structure of M. tuberculosis AldR (Rv2779c) showing that the N-terminal DNA-binding domains are swapped, forming a dimer, and four dimers are assembled into an octamer through crystal symmetry. The C-terminal domain is involved in oligomeric interactions that stabilize the oligomer, and it contains the effector-binding sites. The latter sites are 30-60% larger compared with homologs like MtbFFRP (Rv3291c) and can consequently accommodate larger molecules. MtbAldR binds to the region upstream to the ald gene that is highly up-regulated in nutrient-starved tuberculosis models and codes for l-alanine dehydrogenase (MtbAld; Rv2780). Further, the MtbAldR-DNA complex is inhibited upon binding of Ala, Tyr, Trp and Asp to the protein. Studies involving a ligand-binding site G131T mutant show that the mutant forms a DNA complex that cannot be inhibited by adding the amino acids. Comparative studies suggest that binding of the amino acids changes the relative spatial disposition of the DNA-binding domains and thereby disrupt the protein-DNA complex. Finally, we identified small molecules, including a tetrahydroquinoline carbonitrile derivative (S010-0261), that inhibit the MtbAldR-DNA complex. The latter molecules represent the very first inhibitors of a feast/famine regulatory protein from any source and set the stage for exploring MtbAldR as a potential anti-tuberculosis target. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Dosimetry using Gafchromic XR-RV2 radiochromic films in interventional radiology

International Nuclear Information System (INIS)

Neocleous, A.; Yakoumakis, E.; Gialousis, G.; Dimitriadis, A.; Yakoumakis, N.; Georgiou, E.

2011-01-01

Patient dose measurements of local entrance dose to the skin have been carried out using radiochromic film (Gafchromic XR-RV2) in a sample of interventional procedures. The major aim of the work was to measure patient entrance dose from such examinations using Gafchromic XR-RV2. Forty-five various interventional procedures (including nephrostomies and urinary stenting, biliary stenting and percutaneous transhepatic biliary drainage (PTBD) and aorta stent grafting) were evaluated. Maximum entrance doses were 537±119 mGy in nephrostomies, 943±631 mGy in biliary stenting and PTBD and 2425±569 mGy in aorta stent grafting. Results indicate that all patients undergoing aorta stent grafting received skin dose above 1500 mGy, which means that there is an increasing potential to suffer radiation-induced skin injuries. The film provides dose mapping, the position of the skin area with highest dose and can be used for immediate qualitative and as well as for quantitative assessment of patient skin dose. (authors)

Potential Mechanism of Action of meso-Dihydroguaiaretic Acid on Mycobacterium tuberculosis H37Rv

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Aldo F. Clemente-Soto

2014-12-01

Full Text Available The isolation and characterization of the lignan meso-dihydroguaiaretic acid (MDGA from Larrea tridentata and its activity against Mycobacterial tuberculosis has been demonstrated, but no information regarding its mechanism of action has been documented. Therefore, in this study we carry out the gene expression from total RNA obtained from M. tuberculosis H37Rv treated with MDGA using microarray technology, which was validated by quantitative real time polymerase chain reaction. Results showed that the alpha subunit of coenzyme A transferase of M. tuberculosis H37Rv is present in both geraniol and 1-and 2-methylnaphthalene degradation pathways, which are targeted by MDGA. This assumption was supported by molecular docking which showed stable interaction between MDGA with the active site of the enzyme. We propose that inhibition of coenzyme A transferase of M. tuberculosis H37Rv results in the accumulation of geraniol and 1-and 2-methylnaphtalene inside bacteria, causing membrane destabilization and death of the pathogen. The natural product MDGA is thus an attractive template to develop new anti-tuberculosis drugs, because its target is different from those of known anti-tubercular agents.

Statistical study of overvoltages by maneuvering in switches in high voltage using EMTP-RV

International Nuclear Information System (INIS)

Dominguez Herrera, Diego Armando

2013-01-01

The transient overvoltages produced by maneuvering of switches are studied in a statistical way and through a variation the sequential closing times of switches in networks larger than 230 kV. This study is performed according to time delays and typical deviation ranges, using the tool EMTP- RV (ElectroMagnetic Trasient Program Restructured Version). A conceptual framework related with the electromagnetic transients by maneuver is developed in triphasic switches installed in nominal voltages higher than 230 kV. The methodology established for the execution of statistical studies of overvoltages by switch maneuver is reviewed and evaluated by simulating two fictitious cases in EMTP-RV [es

Human neonatal rotavirus vaccine (RV3-BB) targets rotavirus from birth

Science.gov (United States)

Thobari, Jarir At; Satria, Cahya Dewi; Handley, Amanda; Watts, Emma; Cowley, Daniel; Nirwati, Hera; Ackland, James; Standish, Jane; Justice, Frances; Byars, Gabrielle; Lee, Katherine J.; Barnes, Graeme L.; Bachtiar, Novilia S.; Icanervilia, Ajeng Viska; Boniface, Karen; Bogdanovic-Sakran, Nada; Pavlic, Daniel; Bishop, Ruth F.; Kirkwood, Carl D.; Buttery, Jim P.; Soenarto, Yati

2018-01-01

Background A birth dose strategy using a neonatal rotavirus vaccine to target early prevention of rotavirus disease may address remaining barriers to global vaccine implementation. Methods We conducted a randomized, placebo-controlled trial in Indonesia to evaluate the efficacy of an oral human neonatal rotavirus vaccine (RV3-BB) to prevent rotavirus gastroenteritis. Healthy newborns received three doses of RV3-BB administered in a neonatal schedule at 0-5 days, 8 and 14 weeks or infant schedule at 8, 14 and 18 weeks, or placebo. Laboratory-confirmed rotavirus gastroenteritis was graded using a modified Vesikari score. The primary analysis was efficacy against severe rotavirus gastroenteritis from two weeks after all doses to 18 months in the combined vaccine group (neonatal and infant schedule) compared with placebo. Results Vaccine efficacy against severe rotavirus gastroenteritis to 18 months was 63% in the combined vaccine group (95% CI 34, 80; p<0.001), 75% in the neonatal vaccine group (95% confidence interval [CI] 44, 91; p<0.001) and 51% in the infant vaccine group (95% CI 7, 76; p=0.03) in the per protocol analysis, with similar results in the intention-to-treat analysis. Vaccine efficacy to 12 months was 94% in the neonatal vaccine group (95%CI 56, 99; p=0.006). Vaccine take occurred in 78/83 (94%) in the neonatal vaccine group and 83/84 (99%) in the infant vaccine group. The vaccine was well tolerated, with similar incidence of adverse events in vaccine and placebo recipients. Conclusion RV3-BB was efficacious, immunogenic and well-tolerated when administered in a neonatal or infant schedule in Indonesia. PMID:29466164

Overview of errors in the reference sequence and annotation of Mycobacterium tuberculosis H37Rv, and variation amongst its isolates

KAUST Repository

Köser, Claudio U.

2012-06-01

Since its publication in 1998, the genome sequence of the Mycobacterium tuberculosis H37Rv laboratory strain has acted as the cornerstone for the study of tuberculosis. In this review we address some of the practical aspects that have come to light relating to the use of H37Rv throughout the past decade which are of relevance for the ongoing genomic and laboratory studies of this pathogen. These include errors in the genome reference sequence and its annotation, as well as the recently detected variation amongst isolates of H37Rv from different laboratories. © 2011 Elsevier B.V..

SDSS-III MARVELS Planet Candidate RV Follow-up

Science.gov (United States)

Ge, Jian; Thomas, Neil; Ma, Bo; Li, Rui; SIthajan, Sirinrat

2014-02-01

Planetary systems, discovered by the radial velocity (RV) surveys, reveal strong correlations between the planet frequency and stellar properties, such as metallicity and mass, and a greater diversity in planets than found in the solar system. However, due to the sample sizes of extant surveys (~100 to a few hundreds of stars) and their heterogeneity, many key questions remained to be addressed: Do metal poor stars obey the same trends for planet occurrence as metal rich stars? What is the distribution of giant planets around intermediate- mass stars and binaries? Is the ``planet desert'' within 0.6 AU in the planet orbital distribution of intermediate-mass stars real? The MARVELS survey has produced the largest homogeneous RV measurements of 3300 V=7.6-12 FGK stars. The latest data pipeline effort at UF has been able to remove long term systematic errors suffered in the earlier data pipeline. 18 high confident giant planet candidates have been identified among newly processed data. We propose to follow up these giant planet candidates with the KPNO EXPERT instrument to confirm the detection and also characterize their orbits. The confirmed planets will be used to measure occurrence rates, distributions and multiplicity of giants planets around F,G,K stars with a broad range of mass (~0.6-2.5 M_⊙) and metallicity ([Fe/H]~-1.5-0.5). The well defined MARVELS survey cadence allows robust determinations of completeness limits for rigorously testing giant planet formation theories and constraining models.

Mycobacterium tuberculosis Latent Antigen Rv2029c from the Multistage DNA Vaccine A39 Drives TH1 Responses via TLR-mediated Macrophage Activation

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Haibo Su

2017-11-01

Full Text Available Targeting of Mycobacterium tuberculosis (MTB latent antigens comprises a crucial strategy for the development of alternative tuberculosis (TB vaccine(s that protects against TB reactivation. Here, we generated a multistage DNA vaccine, A39, containing the early antigens Ag85A and Rv3425 as well as the latency-associated protein Rv2029c, which conferred protective immunity in a pre-exposure mouse model. Moreover, administration of the A39 vaccination after MTB exposure inhibited reactivation and resulted in significantly lower bacterial loads in the lungs and spleen of mice, compared to those in the control population. Subsequently, we investigated the effect of Rv2029c on innate immunity and characterized the molecular details of the interaction of this protein with the host via iTRAQ proteomic and biochemical assay analyses. Rv2029c activated macrophages, triggered the production of pro-inflammatory cytokines, and promoted toll-like receptor/mitogen-activated protein kinase (TLR/MAPK-dependent macrophage apoptosis. Furthermore, Rv2029c treatment enhanced the ability of Mycobacterium bovis Bacillus Calmette-Guérin (BCG-infected macrophages to present antigens to CD4+ T cells in vitro, which correlated with an increase in MHC-II expression. Lastly, Rv2029c-treated macrophages activated T cells, effectively polarized CD4+ and CD8+ T cells to secrete IFN-γ and IL-2, and specifically expanded a population of CD44highCD62LlowCD4+/CD8+ effector/memory cells, indicating that Rv2029c, as a specific recall antigen, contributes to Th1 polarization in T cell immunity. These results suggest that Rv2029c and A39 comprise promising targets for the development of next-generation clinical TB therapeutic vaccines.

Measuring mental health in the clinical setting: what is important to service users? The Mini-Service user Recovery Evaluation scale (Mini-SeRvE).

Science.gov (United States)

Barber, Joanna M; Parsons, Helen; Wilson, Carol A; Cook, Christopher C H

2017-12-01

Since 2001, a policy of positive mental health recovery has been promoted in the UK, with service user involvement. This has not been easy to implement in the clinical setting. To develop and validate a brief self-report, service user-designed, outcome measure (Mini-SeRvE), for clinical use, including spiritual and religious issues. From the previously developed Service user Recovery Evaluation scale (SeRvE), 15 questions were selected for Mini-SeRvE which was self-completed by 207 people; 100 service users and, for comparison, 107 staff. Results were analysed using SPSS software (SPSS Inc., Chicago, IL). Mini-SeRvE is reliable, Cronbach's alpha 0.852. Correlation with another recovery scale, Mental Health Recovery Measure, was high, r = 0.819. Three reliable subscales emerged; existential well-being (EWB), mental ill-being (MIB) and religious well-being (RWB). Scores of the EWB and MIB subscales were higher for staff, consistent with higher mental well-being. Religious well-being scores were higher in service users, who also rated religion as more important to them. Mini-SeRvE is a valid measure of service user recovery. The importance of religion/spiritual belief for our users is highlighted, this being reflected in the subject matter of Mini-SeRvE. Mini-SeRvE assessments could show individual priorities, evaluate therapy and aid clinical decision-making.

Molecular characterization of tlyA gene product, Rv1694 of Mycobacterium tuberculosis: A non-conventional hemolysin and a ribosomal RNA methyl transferase

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Ahmed Neesar

2010-09-01

Full Text Available Abstract Background Mycobacterium tuberculosis is a virulent bacillus causing tuberculosis, a disease responsible for million deaths each year worldwide. In order to understand its mechanism of pathogenesis in humans and to help control tuberculosis, functions of numerous Mycobacterium tuberculosis genes are being characterized. In this study we report the dual functionality of tlyA gene product of Mycobacterium tuberculosis annotated as Rv1694, a 268 amino acid long basic protein. Results The recombinant purified Rv1694 protein was found to exhibit hemolytic activity in vitro. It showed concentration and time-dependent hemolysis of rabbit and human erythrocytes. Multiple oligomeric forms (dimers to heptamers of this protein were seen on the membranes of the lysed erythrocytes. Like the oligomers of conventional, well-known, pore-forming toxins, the oligomers of Rv1694 were found to be resistant to heat and SDS, but were susceptible to reducing agents like β-mercaptoethanol as it had abolished the hemolytic activity of Rv1694 indicating the role of disulfide bond(s. The Rv1694 generated de novo by in vitro transcription and translation also exhibited unambiguous hemolysis confirming the self assembly and oligomerization properties of this protein. Limited proteolytic digestion of this protein has revealed that the amino terminus is susceptible while in solution but is protected in presence of membrane. Striking feature of Rv1694 is its presence on the cell wall of E. coli as visualized by confocal microscopy. The surface expression is consistent with the contact dependent haemolytic ability of E. coli expressing this protein. Also, immune serum specific to this protein inhibits the contact dependent hemolysis. Moreover, Rv1694 protein binds to and forms stable oligomers on the macrophage phagosomal membranes. In addition to all these properties, E. coli expressing Rv1694 was found to be susceptible to the antibiotic capreomycin as its growth

SU-E-T-599: Patient Safety Enhancements Through a Study of R&V System Override Data

Energy Technology Data Exchange (ETDEWEB)

Hendrickson, K; Vimolchalao, S [University of Washington, Seattle, WA (United States)

2015-06-15

Purpose: Record and verify (R&V) software systems include safety checks that compare actual machine parameters with prescribed values for a patient’s treatment, such as treatment couch position, linac, energy, and MUs. The therapist is warned of a mismatch with a pop-up and prompted to approve an override in order to continue without changes. Override approval is often legitimate, but the pop-up can also genuinely indicate a problem that would Result in the wrong treatment. When there are numerous pop-up warnings, human nature leads us to approve any override without careful reading, undermining the effectiveness of the safety mechanism. Methods: Override data was collected from our R&V system for all patients treated between October 8 and 29, 2012, on four linacs and entered into a spreadsheet. Additional data collected included treatment technique, disease site, immobilization, time, linac, and whether localization images were obtained. Data were analyzed using spreadsheet tools to reveal trends, patterns and associations that might suggest appropriate process changes that could decrease the total number of overrides. Results: 76 out of 113 patients had overrides. Out of the 944 treatments, 599 override items were generated. The majority were due to couch positions. 74 of the 84 overrides on a linac equipped with a 6D couch were due to the use of the rotational corrections and the fact that the 6D couch control does not communicate with the R&V system; translations required to rotate the couch appear to the R&V system as translations outside the tolerance range. Conclusion: Many findings were interesting but did not suggest a process change. Proposed process changes include creating site-specific instead of just technique-specific tolerance tables for couch shifts. Proposed improvements to the vendor are to facilitate direct communication between the 6D couch and the R&V system to eliminate those override warnings related to lack of communication.

Physical and chemical data collected by bottle and CTD in the Gulf of Mexico from the R/V Gyre and R/V Pelican, April 2004 - July 2009 to help resolve the dominant oceanographic processes that control the timing, duration, and severity of hypoxia of the region (NODC Accession 0088164)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical and chemical oceanographic observational data collected by bottle and CTD in the Gulf of Mexico from the R/V Gyre and R/V Pelican, April 2004 - July 2009....

Stellar astrophysics

International Nuclear Information System (INIS)

1988-01-01

Enhanced mass loss occurs at critical stages in the evolution of stars over a wide range of stellar mass. Observationally, these stages are difficult to identify because of their short duration and because the star is often obscured by dust which condenses in the ejecta. A study of a G-type star, of which only the outer envelope was directly visible, was undertaken by the South African Astronomical Observatory (SAAO). The star itself was obscured by dust clouds and its light was only feebly seen by reflection from some of these clouds. Other studies of the galaxy undertaken by the SAAO include observations of the following: the extreme carbon star IRAS 15194-5115; RV Tauri and T Tauri stars; pre-main sequence stars; the properties of circumstellar dust; rotational modulation and flares on RS CVn and BY Dra stars; heavy-element stars; hydrogen-deficient stars; the open cluster NGC6192; stars in Omega Centauri, and lunar occulations of stars. Simultaneous x-ray, radio and optical data of the flare star YZ CMi were also obtained. 1 fig

Current meter and other data collected using current meter casts from R/V RESEARCHER and R/V CALANUS in the Atlantic and Pacific Ocean as part of the Eastern Pacific Ocean Circulation Study (EPOCS) and Subtropical Atlantic Current Study (STACS), 23 March 1983 - 19 November 1986 (NODC Accession 8700226)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Current meter and other data were collected using current meter casts from R/V RESEARCHER and R/V CALANUS in the Atlantic and Pacific Ocean from March 23, 1983 to...

Spectroscopy of bright Algol-type semi-detached close binary system HU Tauri (HR 1471)

Science.gov (United States)

Parthasarathy, M.

2018-01-01

Radial velocities of the primary component (B8V) of HU Tauri derived from the photographic spectra obtained during January 1974 to December 1974 and spectroscopic orbital elements from the analysis of the radial velocity curve of the B8V primary are given. The H line of the late type secondary component is clearly detected on the photographic spectra taken around the quadratures and radial velocities of the secondary component are derived. The radial velocity semi amplitudes of the primary (K) and secondary (K) are found to be 60 km/sec and 234 km/sec respectively. The mass ratio M/M = K/K is found to be 0.2564. The detection of the H line of the secondary is confirmed from the high resolution spectra that I obtained during 1981 and 1983 at quadratures using the 2.1-m McDonald observatory Otto Struve reflector telescope and high resolution coude Reticon spectrograph.

Influence of Distal Resistance and Proximal Stiffness on Hemodynamics and RV Afterload in Progression and Treatments of Pulmonary Hypertension: A Computational Study with Validation Using Animal Models

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Zhenbi Su

2013-01-01

Full Text Available We develop a simple computational model based on measurements from a hypoxic neonatal calf model of pulmonary hypertension (PH to investigate the interplay between vascular and ventricular measures in the setting of progressive PH. Model parameters were obtained directly from in vivo and ex vivo measurements of neonatal calves. Seventeen sets of model-predicted impedance and mean pulmonary arterial pressure (mPAP show good agreement with the animal measurements, thereby validating the model. Next, we considered a predictive model in which three parameters, PVR, elastic modulus (EM, and arterial thickness, were varied singly from one simulation to the next to study their individual roles in PH progression. Finally, we used the model to predict the individual impacts of clinical (vasodilatory and theoretical (compliance increasing PH treatments on improving pulmonary hemodynamics. Our model (1 displayed excellent patient-specific agreement with measured global pulmonary parameters; (2 quantified relationships between PVR and mean pressure and PVS and pulse pressure, as well as studiying the right ventricular (RV afterload, which could be measured as a hydraulic load calculated from spectral analysis of pulmonary artery pressure and flow waves; (3 qualitatively confirmed the derangement of vascular wall shear stress in progressive PH; and (4 established that decreasing proximal vascular stiffness through a theoretical treatment of reversing proximal vascular remodeling could decrease RV afterload.

PEMBUATAN PROGRAM INTERFACE UNTUK PENGONTROLAN RV-M1

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Endra Endra

2007-10-01

Full Text Available Article explores the making of interface of RV-M1 hand robot control that replaced the cosiprog program,a program that is able to help student in Mecatronica-1 Practice, and able to control the hand robot by localnetwork by two user or more. The used methods were literature study, and field study, that is design method. Theresearch result are control of hand robot on X,Y,Z axis and point to point, the use of local network to control thehand robot, save certain position, and use several user to control the robot.Keywords: interface program, robot, local network

Millisele õpetajale kingiksite imerohu? / Karl Martin Sinijärv, Vahur Keller, Kaarel Tarand ... [jt.

Index Scriptorium Estoniae

2010-01-01

Küsimusele vastavad: Eesti kirjanike liidu esimees Karl Martin Sinijärv, nuku- ja noorsooteatri lavastaja Vahur Keller, Sirbi peatoimetaja Kaarel Tarand, kirjanik Andrus Kivirähk, ajakirjanik Juhani Püttsepp

Infection with koala retrovirus subgroup B (KoRV-B), but not KoRV-A, is associated with chlamydial disease in free-ranging koalas (Phascolarctos cinereus)

OpenAIRE

Waugh, Courtney A.; Hanger, Jonathan; Loader, Joanne; King, Andrew; Hobbs, Matthew; Johnson, Rebecca; Timms, Peter

2017-01-01

The virulence of chlamydial infection in wild koalas is highly variable between individuals. Some koalas can be infected (PCR positive) with Chlamydia for long periods but remain asymptomatic, whereas others develop clinical disease. Chlamydia in the koala has traditionally been studied without regard to coinfection with other pathogens, although koalas are usually subject to infection with koala retrovirus (KoRV). Retroviruses can be immunosuppressive, and there is evidence of an immunosuppr...

Heat Flow Data Cruise MD72 RV Marion Dufresne over the Mascarene Ridge

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Data were gathered by the R/V Marion Dufresne in May and June of 1992 over the Mascarene Ridge in the Indian Ocean on cruise MD72/MASCAFLUX. Heat flow measurements...

The Prognostic Impact of the Evolution of RV Function in Idiopathic DCM.

Science.gov (United States)

Merlo, Marco; Gobbo, Marco; Stolfo, Davide; Losurdo, Pasquale; Ramani, Federica; Barbati, Giulia; Pivetta, Alberto; Di Lenarda, Andrea; Anzini, Marco; Gigli, Marta; Pinamonti, Bruno; Sinagra, Gianfranco

2016-09-01

In this study, the authors analyzed the prognostic role of right ventricular systolic function (RVF) longitudinal trends in a large cohort of patients affected by dilated cardiomyopathy (DCM). RVF is a known prognostic predictor in DCM; however, whether RVF changes over time to better predict the long-term disease progression has not been investigated. From 1993 to 2008, we analyzed 512 patients with DCM (46 years of age [36 to 55 years of age], left ventricular ejection fraction 32% [25% to 41%]) with a potential follow-up of ≥72 months and available data at baseline and at least 1 pre-specified follow-up evaluation (i.e., 6, 24, 48, or 72 months). RV dysfunction was defined as RV fractional area change model, RVF revaluation over time maintained an independent predictive value (hazard ratio: 2.83; 95% CI: 1.57 to 5.11; p = 0.0006). Patients with DCM frequently present RV dysfunction at first evaluation. However, a complete RVF recovery is largely observed early after optimization of medical therapy and predates subsequent left ventricular reverse remodeling. Systematic revaluation of patients including RVF throughout regular follow-up conferred additive long-term prognostic value to the baseline evaluation. Copyright © 2016 American College of Cardiology Foundation. Published by Elsevier Inc. All rights reserved.

Rv2131c gene product: An unconventional enzyme that is both inositol monophosphatase and fructose-1,6-bisphosphatase

International Nuclear Information System (INIS)

Gu Xiaoling; Chen Mao; Shen Hongbo; Jiang Xin; Huang Yishu; Wang Honghai

2006-01-01

Inositol monophosphatase is an enzyme in the biosynthesis of myo-inostiol, a crucial substrate for the synthesis of phosphatidylinositol, which has been demonstrated to be an essential component of mycobacteria. In this study, the Rv2131c gene from Mycobacterium tuberculosis H37Rv was cloned into the pET28a vector and the recombinant plasmid was transformed into Escherichia coli BL21 (DE3) strain, allowing the expression of the enzyme in fusion with a histidine-rich peptide on the N-terminal. The fusion protein was purified from the soluble fraction of the lysed cells under native conditions by immobilized metal affinity chromatography (IMAC). The purified Rv2131c gene product showed inositol monophosphatase activity but with substrate specificity that was broader than those of several bacterial and eukaryotic inositol monophosphatases, and it also acted as fructose-1,6-bisphosphatase. The dimeric enzyme exhibited dual activities of IMPase and FBPase, with K m of 0.22 ± 0.03 mM for inositol-1-phosphate and K m of 0.45 ± 0.05 mM for fructose-1,6-bisphosphatase. To better understand the relationship between the function and structure of the Rv2131c enzyme, we constructed D40N, L71A, and D94N mutants and purified these corresponding proteins. Mutations of D40N and D94N caused the proteins to almost completely lose both the inositol monophosphatase and fructose-1,6-bisphosphatase activities. However, L71A mutant did not cause loss either of the activities, but the activity toward the inositol was 12-fold more resistant to inhibition by lithium (IC 5 ∼ 60 mM). Based on the substrate specificity and presence of conserved sequence motifs of the M. tuberculosis Rv2131c, we proposed that the enzyme belonged to class IV fructose-1,6-bisphosphatase (FBPase IV)

Probing Signatures of a Distant Planet around the Young T-Tauri Star CI Tau Hosting a Possible Hot Jupiter

Science.gov (United States)

Konishi, Mihoko; Hashimoto, Jun; Hori, Yasunori

2018-06-01

We search for signatures of a distant planet around the two million-year-old classical T-Tauri star CI Tau hosting a hot-Jupiter candidate ({M}{{p}}\\sin i∼ 8.1 {M}Jupiter}) in an eccentric orbit (e ∼ 0.3). To probe the existence of an outer perturber, we reanalyzed 1.3 mm dust continuum observations of the protoplanetary disk around CI Tau obtained by the Atacama Large Millimeter/submillimeter Array (ALMA). We found a gap structure at ∼0.″8 in CI Tau’s disk. Our visibility fitting assuming an axisymmetric surface brightness profile suggested that the gap is located at a deprojected radius of 104.5 ± 1.6 au and has a width of 36.9 ± 2.9 au. The brightness temperature around the gap was calculated to be ∼2.3 K lower than that of the ambient disk. Gap-opening mechanisms such as secular gravitational instability (GI) and dust trapping can explain the gap morphology in the CI Tau disk. The scenario that an unseen planet created the observed gap structure cannot be ruled out, although the coexistence of an eccentric hot Jupiter and a distant planet around the young CI Tau would be challenging for gravitational scattering scenarios. The mass of the planet was estimated to be between ∼0.25 M Jupiter and ∼0.8 M Jupiter from the gap width and depth ({0.41}-0.06+0.04) in the modeled surface brightness image, which is lower than the current detection limits of high-contrast direct imaging. The young classical T-Tauri CI Tau may be a unique system for exploring the existence of a potential distant planet as well as the origin of an eccentric hot Jupiter.

Inhibition of apoptosis by Rv2456c through nuclear factor-κB extends the survival of Mycobacterium tuberculosis

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Kristen L. Jurcic Smith

2016-01-01

Full Text Available Mycobacterium tuberculosis, the causative agent of tuberculosis, is an intracellular pathogen with several survival mechanisms aimed at subverting the host immune system. Apoptosis has been shown to be mycobactericidal, to activate CD8+ T cells, and to be modulated by mycobacterial proteins. Since few mycobacterial proteins have so far been directly implicated in the interactions between M. Tuberculosis and host cell apoptosis, we screened M. Tuberculosis H37Rv transposon mutants to identify mutants that fail to inhibit cell death (FID. One of these FID mutants, FID19, had a transposon insertion in Rv2456c and is important for survival in host cells. The lack of the protein resulted in enhanced caspase-3 mediated apoptosis, which is probably due to an inability to activate nuclear factor-κB. Additionally, FID19 infection enhanced polyfunctional CD8+ T cells and induced a higher frequency of interferon-γ secreting immune cells in a murine model. Taken together, our data suggest that Rv2456c is important for the survival of H37Rv by subduing the innate and ultimately adaptive immune responses of its host by preventing apoptosis of the infected cell. Better understanding of the host-mycobacterial interactions may be beneficial to develop novel drug targets and engineer more efficacious vaccine strains against tuberculosis.

Der Peipussee/Peipsi järv Fischereiche Ostgrenze der EU / Arne von Maydell

Index Scriptorium Estoniae

Maydell, Arne von

2012-01-01

Mööda Peipsi järve kulgeb alates 1. maist 2004 Euroopa Liidu ja Venemaa vaheline piir. Suur siseeveekogu on üks suuremaid järvi Euroopas. Järv on väga kalarikas. Nii vene kui eesti kultuuris on Peipsi järvel oma koht

Mycobacterium tuberculosis Rv3402c enhances mycobacterial survival within macrophages and modulates the host pro-inflammatory cytokines production via NF-kappa B/ERK/p38 signaling.

Directory of Open Access Journals (Sweden)

Wu Li

Full Text Available Intracellular survival plays a central role in the pathogenesis of Mycobacterium tuberculosis, a process which depends on an array of virulence factors to colonize and replicate within the host. The M. tuberculosis iron regulated open reading frame (ORF rv3402c, encoding a conserved hypothetical protein, was shown to be up-regulated upon infection in both human and mice macrophages. To explore the function of this ORF, we heterologously expressed the rv3402c gene in the non-pathogenic fast-growing Mycobacterium smegmatis strain, and demonstrated that Rv3402c, a cell envelope-associated protein, was able to enhance the intracellular survival of recombinant M. smegmatis. Enhanced growth was not found to be the result of an increased resistance to intracellular stresses, as growth of the Rv3402c expressing strain was unaffected by iron depletion, H2O2 exposure, or acidic conditions. Colonization of macrophages by M. smegmatis expressing Rv3402c was associated with substantial cell death and significantly greater amount of TNF-α and IL-1β compared with controls. Rv3402c-induced TNF-α and IL-1β production was found to be mediated by NF-κB, ERK and p38 pathway in macrophages. In summary, our study suggests that Rv3402c delivered in a live M. smegmatis vehicle can modify the cytokines profile of macrophage, promote host cell death and enhance the persistence of mycobacterium within host cells.

Sedimentary record of heavy metals in Lake Rõuge Liinjärv, southern Estonia

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Lepane, Viia

2007-12-01

Full Text Available Anthropogenic impact on Lake Liinjärv (Rõuge, southern Estonia was studied back to the mid-19th century on the basis of heavy metals (Pb, Cu, Zn, Mn, and Hg and geochemical parameters of a short sediment core dated by 210Pb isotopes. The development of the lake and its sediment composition are heavily influenced by the inflow of saturated calcareous waters that cause precipitation of calcium carbonates. The concentrations of most of the metals started to increase at the end of the 1970s. This is most clearly observable for Zn, Cu, and Pb. At the same time the distribution pattern of Mn seems to be controlled mainly by the redox conditions in the hypolimneon. The main sources of pollutants in Lake Liinjärv, due to its large catchment area, are the influence of agricultural activity and atmospheric input. Organic matter is the main factor affecting heavy metal (Pb, Hg, Cu, and Zn distribution in lake sediments.

Improving the distances of post-AGB objects in the Milky Way

International Nuclear Information System (INIS)

Vickers, Shane B; Owers, Matt S; Frew, David J; Parker, Quentin A; Bojičič, Ivan S

2016-01-01

Post-AGB (PAGB) stars are short-lived, low-intermediate mass objects transitioning from the asymptotic giant branch (AGB) to the white dwarf (WD) phase. These objects are characterised by a constant, core-mass dependent luminosity and a large infrared excess from the dusty envelope ejected at the top of the AGB. PAGB stars provide insights into the evolution of their direct descendants, planetary nebulae (PNe). Calculation of physical characteristics of PAGB are dependent on accurately determined distances scarcely available in the literature. Using the Torun catalogue for PAGB objects, supplemented with archival data, we have determined distances to the known population of Galactic PAGB stars. This is by modelling their spectral energy distributions (SED) with black bodies and numerically integrating over the entire wavelength range to determine the total integrated object flux. For most PAGB stars we assumed their luminosities are based on their positional characteristics and stellar evolution models. RV Tauri stars however are known to follow a period-luminosity relation (PLR) reminiscent of type-2 Cepheids. For these variable PAGB stars we determined their luminosities via the PLR and hence their distances. This allows us to overcome the biggest obstacle to characterising these poorly understood objects that play a vital part in Galactic chemical enrichment. (paper)

Assessment of right ventricular longitudinal strain by 2D speckle tracking imaging compared with RV function and hemodynamics in pulmonary hypertension.

Science.gov (United States)

Li, Yidan; Wang, Yidan; Meng, Xiangli; Zhu, Weiwei; Lu, Xiuzhang

2017-11-01

The right ventricular longitudinal strain (RVLS) of pulmonary hypertension (PH) patients and its relationship with RV function parameters measured by echocardiography and hemodynamic parameters measured by right heart catheterization was investigated. According to the WHO functional class (FC), 66 PH patients were divided into FC I/II (group 1) and III/IV (group 2). RV function parameters were measured by echocardiographic examinations. Hemodynamic parameters were obtained by right heart catheterization. Patients in group 2 had higher systolic pulmonary artery pressure (sPAP; P good sensitivity and specificity. Evidence has shown that RVLS measurement can provide the much-needed and reliable information on RV function and hemodynamics. Therefore, this qualifies as a patient-friendly approach for the clinical management of PH patients.

Discussing the low fraction of disk-bearing T Tauri stars discovered near to the Sh2-296 nebula

Science.gov (United States)

Gregorio-Hetem, Jane

2015-08-01

A multiband study has been developed by our team in the direction of young star clusters associated to the Sh2-296 nebula aiming to unveil the star formation history of this galactic molecular cloud that shows a mixing of different age stellar groups. A sample of 58 pre-main sequence stars has been recently discovered by us in this region (Fernandes et al. 2015, MNRAS in press), based on optical spectral features. Only 41% of the sample shows evidence of IR excess revealing the presence of circumstellar disks. It is interesting to note that the targets were revealed by their strong X-ray emission, typically found in T Tauri stars (TTs) (Santos-Silva et al. 2015, in preparation) . In this case, it would be expected a larger number of disk-bearing stars and also the fraction of circumstellar emission (fc = Ldisk/Ltotal ) should be more significant in these objects. However, we verified that only 12% of the sample has fc > 30%. This low fraction is quite rare compared to most young star-forming regions, suggesting that some external factor has accelerated the disc dissipation. In the present work we explore the circumstellar structure of a subsample of 8 TTs associated to Sh2-296. The TTs were selected on the basis of their high circumstellar emission, which is estimated by SED fitting that uses near- to mid-IR data extracted from available catalogues (WISE, AKARI, MSX). The circumstellar characteristics are confronted to interstellar environment by comparing the stellar spatial distribution with 12CO maps (Nanten Survey, Fukui et al. ). Most of the TTs are projected against moderate molecular emission (33 Jy), but some of them are found in regions of lower levels of gas distribution (3.8 Jy). The similarities and differences found among the studied objects are discussed in order to better understand the formation and evolution of protostellar disks of the selected sample and their role in the star formation scenario nearby Sh2-296

The ABC transporter Rv1272c of Mycobacterium tuberculosis enhances the import of long-chain fatty acids in Escherichia coli.

Science.gov (United States)

Martin, Audrey; Daniel, Jaiyanth

2018-02-05

Mycobacterium tuberculosis (Mtb), which causes tuberculosis, is capable of accumulating triacylglycerol (TAG) by utilizing fatty acids from host cells. ATP-binding cassette (ABC) transporters are involved in transport processes in all organisms. Among the classical ABC transporters in Mtb none have been implicated in fatty acid import. Since the transport of fatty acids from the host cell is important for dormancy-associated TAG synthesis in the pathogen, mycobacterial ABC transporter(s) could potentially be involved in this process. Based on sequence identities with a bacterial ABC transporter that mediates fatty acid import for TAG synthesis, we identified Rv1272c, a hitherto uncharacterized ABC-transporter in Mtb that also shows sequence identities with a plant ABC transporter involved in fatty acid transport. We expressed Rv1272c in E. coli and show that it enhances the import of radiolabeled fatty acids. We also show that Rv1272c causes a significant increase in the metabolic incorporation of radiolabeled long-chain fatty acids into cardiolipin, a tetra-acylated phospholipid, and phosphatidylglycerol in E. coli. This is the first report on the function of Rv1272c showing that it displays a long-chain fatty acid transport function. Copyright © 2018 Elsevier Inc. All rights reserved.

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial.

Directory of Open Access Journals (Sweden)

Paul T Edlefsen

2015-02-01

Full Text Available The RV144 clinical trial showed the partial efficacy of a vaccine regimen with an estimated vaccine efficacy (VE of 31% for protecting low-risk Thai volunteers against acquisition of HIV-1. The impact of vaccine-induced immune responses can be investigated through sieve analysis of HIV-1 breakthrough infections (infected vaccine and placebo recipients. A V1/V2-targeted comparison of the genomes of HIV-1 breakthrough viruses identified two V2 amino acid sites that differed between the vaccine and placebo groups. Here we extended the V1/V2 analysis to the entire HIV-1 genome using an array of methods based on individual sites, k-mers and genes/proteins. We identified 56 amino acid sites or "signatures" and 119 k-mers that differed between the vaccine and placebo groups. Of those, 19 sites and 38 k-mers were located in the regions comprising the RV144 vaccine (Env-gp120, Gag, and Pro. The nine signature sites in Env-gp120 were significantly enriched for known antibody-associated sites (p = 0.0021. In particular, site 317 in the third variable loop (V3 overlapped with a hotspot of antibody recognition, and sites 369 and 424 were linked to CD4 binding site neutralization. The identified signature sites significantly covaried with other sites across the genome (mean = 32.1 more than did non-signature sites (mean = 0.9 (p < 0.0001, suggesting functional and/or structural relevance of the signature sites. Since signature sites were not preferentially restricted to the vaccine immunogens and because most of the associations were insignificant following correction for multiple testing, we predict that few of the genetic differences are strongly linked to the RV144 vaccine-induced immune pressure. In addition to presenting results of the first complete-genome analysis of the breakthrough infections in the RV144 trial, this work describes a set of statistical methods and tools applicable to analysis of breakthrough infection genomes in general vaccine

EXOSAT observations of V471 Tauri - a 9.25 minute white dwarf pulsation and orbital phase dependent X-ray dips

International Nuclear Information System (INIS)

Jensen, K.A.; Swank, J.H.; Petre, P.; Guinan, E.F.; Sion, E.M.; Navy, E. O. Hulburt Center for Space Research, Washington, DC; Villanova Univ., PA)

1986-01-01

New results obtained from a 28 hr continuous observation of V471 Tauri with the EXOSAT satellite are reported. The detection of soft X-ray fluxes from both the white dwarf and the K dwarf, the discovery of a 9.25 minute pulsation from the white dwarf, and the discovery of orbital phase-related soft X-ray dips are discussed. The dips may be correlated with the triangular Lagrangian points of the binary orbit. The X-ray flux from the white dwarf is consistent with thermal models for a white dwarf photosphere with T(eff) of about 35,000 K, log g = 8.0-8.5, and log N(H) = 18.65 + or - 0.2. 25 references

Crystallization and preliminary X-ray characterization of phosphoglucose isomerase from Mycobacterium tuberculosis H37Rv

International Nuclear Information System (INIS)

Mathur, Divya; Anand, Kanchan; Mathur, Deepika; Jagadish, Nirmala; Suri, Anil; Garg, Lalit C.

2007-01-01

The phosphoglucose isomerase from Mycobacterium tuberculosis H37Rv was crystallized and diffraction data were collected to 2.8 Å resolution. Phosphoglucose isomerase is a ubiquitous enzyme that catalyzes the isomerization of d-glucopyranose-6-phosphate to d-fructofuranose-6-phosphate. The present investigation reports the expression, purification, crystallization and preliminary crystallographic studies of the phosphoglucose isomerase from Mycobacterium tuberculosis H37Rv, which shares 46% sequence identity with that of its human host. The recombinant protein, which was prepared using an Escherichia coli expression system, was crystallized by the hanging-drop vapour-diffusion method. The crystals diffracted to a resolution of 2.8 Å and belonged to the orthorhombic space group I2 1 2 1 2 1 , with unit-cell parameters a = 109.0, b = 119.8, c = 138.9 Å

ORF73 LANA homologs of RRV and MneRV2 contain an extended RGG/RG-rich nuclear and nucleolar localization signal that interacts directly with importin β1 for non-classical nuclear import.

Science.gov (United States)

Howard, Kellie; Cherezova, Lidia; DeMaster, Laura K; Rose, Timothy M

2017-11-01

The latency-associated nuclear antigens (LANA) of KSHV and macaque RFHVMn, members of the RV1 rhadinovirus lineage, are closely related with conservation of complex nuclear localization signals (NLS) containing bipartite KR-rich motifs and RG-rich domains, which interact distinctly with importins α and ß1 for nuclear import via classical and non-classical pathways, respectively. RV1 LANAs are expressed in the nucleus of latently-infected cells where they inhibit replication and establish a dominant RV1 latency. Here we show that LANA homologs of macaque RRV and MneRV2 from the more distantly-related RV2 lineage, lack the KR-rich NLS, and instead have a large RG-rich NLS with multiple RG dipeptides and a conserved RGG motif. The RG-NLS interacts uniquely with importin β1, which mediates nuclear import and accumulation of RV2 LANA in the nucleolus. The alternative nuclear import and localization of RV2 LANA homologs may contribute to the dominant RV2 lytic replication phenotype. Copyright © 2017. Published by Elsevier Inc.

Bactericidal impact of Ag, ZnO and mixed AgZnO colloidal nanoparticles on H37Rv Mycobacterium tuberculosis phagocytized by THP-1 cell lines.

Science.gov (United States)

Jafari, Alireza; Mosavari, Nader; Movahedzadeh, Farahnaz; Nodooshan, Saeedeh Jafari; Safarkar, Roya; Moro, Rossella; Kamalzadeh, Morteza; Majidpour, Ali; Boustanshenas, Mina; Mosavi, Tahereh

2017-09-01

The purpose of this research project was to infection of human macrophages (THP-1) cell lines by H 37 Rv strain of Mycobacterium tuberculosis (H 37 RvMTB) and find out the ratio/dilution of mixture silver (Ag NPs) and zinc oxide nanoparticles (ZnO NPs) whose ability to eliminate phagocytized bacteria compared to rifampicin. The colloidal Ag NPs and ZnO NPs were synthesized and their characteristics were evaluated. The THP-1 cell lines were infected with different concentration of H 37 RvMTB. Next, the infected cells were treated with different ratios/dilutions of Ag NPs, ZnO NPs and rifampicin. The THP-1 were lysed and were cultured in Lowenstein-Jensen agar medium, for eight weeks. The TEM and AFM images of NPs and H 37 RvMTB were supplied. It is observed that Ag NPs, 2 Ag :8 ZnO and 8 Ag :2 ZnO did not have any anti-tubercular effects on phagocytized H 37 RvMTB. Conversely, ZnO NPs somehow eliminated 18.7 × 10 4  CFU ml -1 of H 37 RvMTB in concentration of ∼ 0.468 ppm. To compare with 40 ppm of rifampicin, ∼ 0.663 ppm of 5 Ag :5 ZnO had the ability to kill of H 37 RvMTB, too. Based on previous research, ZnO NPs had strong anti-tubercular impact against H 37 RvMTB to in-vitro condition, but it was toxic in concentration of ∼ 0.468 ppm to both of THP-1 and normal lung (MRC-5) cell lines. It also seems that 5 Ag :5 ZnO is justified because in concentration of ∼ 0.663 ppm of 5 Ag :5 ZnO , phagocytized H 37 RvMTB into the THP-1 had died without any toxicity effects against THP-1 and also MRC-5 cell lines. It is obvious that the mixture of colloidal silver and zinc oxide NPs with ratio of 5 Ag :5 ZnO would be trustworthy options as anti-tubercular nano-drugs in future researches. Copyright © 2017. Published by Elsevier Ltd.

Conserved hypothetical protein Rv1977 in Mycobacterium tuberculosis strains contains sequence polymorphisms and might be involved in ongoing immune evasion.

Science.gov (United States)

Jiang, Yi; Liu, Haican; Wang, Xuezhi; Li, Guilian; Qiu, Yan; Dou, Xiangfeng; Wan, Kanglin

2015-01-01

Host immune pressure and associated parasite immune evasion are key features of host-pathogen co-evolution. A previous study showed that human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved and thus it was deduced that M. tuberculosis lacks antigenic variation and immune evasion. Here, we selected 151 clinical Mycobacterium tuberculosis isolates from China, amplified gene encoding Rv1977 and compared the sequences. The results showed that Rv1977, a conserved hypothetical protein, is not conserved in M. tuberculosis strains and there are polymorphisms existed in the protein. Some mutations, especially one frameshift mutation, occurred in the antigen Rv1977, which is uncommon in M.tb strains and may lead to the protein function altering. Mutations and deletion in the gene all affect one of three T cell epitopes and the changed T cell epitope contained more than one variable position, which may suggest ongoing immune evasion.

HIGH-RESOLUTION OBSERVATIONS OF DUST CONTINUUM EMISSION AT 340 GHz FROM THE LOW-MASS T TAURI STAR FN TAURI

International Nuclear Information System (INIS)

Momose, Munetake; Ohashi, Nagayoshi; Kudo, Tomoyuki; Tamura, Motohide; Kitamura, Yoshimi

2010-01-01

FN Tau is a rare example of a very low-mass T Tauri star that exhibits a spatially resolved nebulosity in near-infrared scattering light. To directly derive the parameters of a circumstellar disk around FN Tau, observations of dust continuum emission at 340 GHz are carried out with the Submillimeter Array (SMA). A point-like dust continuum emission was detected with a synthesized beam of ∼0.''7 in FWHM. From the analysis of the visibility plot, the radius of the emission is estimated to be ≤0.''29, corresponding to 41 AU. This is much smaller than the radius of the nebulosity, 1.''85 for its brighter part at 1.6 μm. The 340 GHz continuum emission observed with the SMA and the photometric data at λ ≤ 70 μm are explained by a power-law disk model whose outer radius and mass are 41 AU and (0.24-5.9) x 10 -3 M sun , respectively, if the exponent of dust mass opacity (β) is assumed to be 0-2. The disk model cannot fully reproduce the flux density at 230 GHz obtained with the IRAM 30 m telescope, suggesting that there is another extended 'halo' component that is missed in the SMA observations. By requiring the halo not to be detected with the SMA, the lower limit to the size of the halo is evaluated to be between 174 AU and 574 AU, depending on the assumed β value. This size is comparable to the near-infrared nebulosity, implying that the halo unseen with the SMA corresponds to the origin of the near-infrared nebulosity. The halo can contain mass comparable to or at most 8 times greater than that of the inner power-law disk, but its surface density should be lower than that at the outer edge of the power-law disk by more than 1 order of magnitude. The physical nature of the halo is unclear, but it may be the periphery of a flared circumstellar disk that is not described well in terms of a power-law disk model, or a remnant of a protostellar envelope having flattened structure.

UNTANGLING THE NEAR-IR SPECTRAL FEATURES IN THE PROTOPLANETARY ENVIRONMENT OF KH 15D

Energy Technology Data Exchange (ETDEWEB)

Arulanantham, Nicole A.; Herbst, William; Gilmore, Martha S.; Cauley, P. Wilson [Astronomy Department, Wesleyan University, Middletown, CT 06459 (United States); Leggett, S. K., E-mail: nicole.arulanantham@colorado.edu [Gemini Observatory (North), Hilo, HI 96720 (United States)

2017-01-10

We report on Gemini/GNIRS observations of the binary T Tauri system V582 Mon (KH 15D) at three orbital phases. These spectra allow us to untangle five components of the system: the photosphere and magnetosphere of star B, the jet, scattering properties of the ring material, and excess near-infrared (near-IR) radiation previously attributed to a possible self-luminous planet. We confirm an early-K subgiant classification for star B and show that the magnetospheric He i emission line is variable, possibly indicating increased mass accretion at certain times. As expected, the H{sub 2} emission features associated with the inner part of the jet show no variation with orbital phase. We show that the reflectance spectrum for the scattered light has a distinctive blue slope and spectral features consistent with scattering and absorption by a mixture of water and methane ice grains in the 1–50 μ m size range. This suggests that the methane frost line is closer than ∼5 au in this system, requiring that the grains be shielded from direct radiation. After correcting for features from the scattered light, jet, magnetosphere, and photosphere, we confirm the presence of leftover near-IR light from an additional source, detectable near minimum brightness. A spectral emission feature matching the model spectrum of a 10 M {sub J}, 1 Myr old planet is found in the excess flux, but other expected features from this model are not seen. Our observations, therefore, tentatively support the picture that a luminous planet is present within the system, although they cannot yet be considered definitive.

A Study on the Marketing Strategy of RV Travel in China%国内房车旅游营销策略研究

Institute of Scientific and Technical Information of China (English)

梁磊

2011-01-01

With the advent of experience economy, RV travel is increasingly welcomed as a fashionable way to travel. At present, the domestic RV tourism development is far behind the developed countries, and there exist such problems as delayed construction of camping and related facilities, the inadequate consumption capacity, the inadequate RV tourism marketing and delayed tourism facilities and services. To solve these problems, this paper puts forward some marketing strategies, including carrying out camp marketing, subdividing RV tourism market, strengthening cooperation among related industries and enterprises, improving ways and means of RV tourism information dissemination, and promoting the construction of RV rental network.%随着体验经济时代的到来，房车旅游作为一种时尚的旅游方式日益受到人们的青睐。当前，国内房车旅游发展远远落后于发达国家，并存在露营地及相关设施建设滞后、居民消费能力不足、房车旅游营销力度不够和房车旅游设施及服务滞后的问题，针对这些问题，提出开展营地营销、细分房车旅游市场、加强房车旅游相关行业企业之间的合作、优化房车旅游信息传播方式和手段、加强房车租赁网络建设的房车旅游具体营销策略。

THE BIMODALITY OF ACCRETION IN T TAURI STARS AND BROWN DWARFS

International Nuclear Information System (INIS)

Vorobyov, E. I.; Basu, Shantanu

2009-01-01

We present numerical solutions of the collapse of prestellar cores that lead to the formation and evolution of circumstellar disks. The disk evolution is then followed for up to three million years. A variety of models of different initial masses and rotation rates allow us to study disk accretion around brown dwarfs and low-mass T Tauri stars (TTSs), with central object mass M * sun , as well as intermediate- and upper-mass TTSs (0.2 M sun * sun ). Our models include self-gravity and allow for nonaxisymmetric motions. In addition to the self-consistently generated gravitational torques, we introduce an effective turbulent α-viscosity with α = 0.01, which allows us particularly to model accretion in the low-mass regime where disk self-gravity is diminishing. A range of models with observationally motivated values of the initial ratio of rotational-to-gravitational energy yield a correlation between mass accretion rate M-dot and M * that is relatively steep, as observed. Additionally, our modeling reveals evidence for a bimodality in the M-dot - M * correlation, with a steeper slope at lower masses and a shallower slope at intermediate and upper masses, as also implied by observations. Furthermore, we show that the neglect of disk self-gravity leads to a much steeper M-dot - M * relation for intermediate- and upper-mass TTSs. This demonstrates that an accurate treatment of global self-gravity is essential to understanding observations of circumstellar disks.

A SURPRISING DYNAMICAL MASS FOR V773 Tau B

Energy Technology Data Exchange (ETDEWEB)

Boden, Andrew F. [Division of Physics, Mathematics, and Astronomy, California Institute of Technology, MS 11-17, Pasadena, CA 91125 (United States); Torres, Guillermo [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Duchene, Gaspard [Division of Astronomy and Astrophysics, University of California, Berkeley, CA 94720 (United States); Konopacky, Quinn [Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, CA 94550 (United States); Ghez, A. M. [Department of Physics and Astronomy, UCLA, Los Angeles, CA 90095-1562 (United States); Torres, Rosa M. [Argelander-Institut fuer Astronomie, Universitaet Bonn, Auf dem Huegel 71, D-53121 Bonn (Germany); Loinard, Laurent [Centro de Radiostronomia y Astrofisica, Universidad Nacional Autonoma de Mexico, Apartado Postal 72-3 (Xangari), 58089 Morelia, Michoacan (Mexico)

2012-03-01

We report on new high-resolution imaging and spectroscopy on the multiple T Tauri star system V773 Tau over the 2003-2009 period. With these data we derive relative astrometry, photometry between the A and B components, and radial velocity (RV) of the A-subsystem components. Combining these new data with previously published astrometry and RVs, we update the relative A-B orbit model. This updated orbit model, the known system distance, and A-subsystem parameters yield a dynamical mass for the B component for the first time. Remarkably, the derived B dynamical mass is in the range 1.7-3.0 M{sub Sun }. This is much higher than previous estimates and suggests that like A, B is also a multiple stellar system. Among these data, spatially resolved spectroscopy provides new insight into the nature of the B component. Similar to A, these near-IR spectra indicate that the dominant source in B is of mid-K spectral type. If B is in fact a multiple star system as suggested by the dynamical mass estimate, the simplest assumption is that B is composed of similar {approx}1.2 M{sub Sun} pre-main-sequence stars in a close (<1 AU) binary system. This inference is supported by line-shape changes in near-IR spectroscopy of B, tentatively interpreted as changing RV among components in V773 Tau B. Relative photometry indicates that B is highly variable in the near-IR. The most likely explanation for this variability is circum-B material resulting in variable line-of-sight extinction. The distribution of this material must be significantly affected by both the putative B multiplicity and the A-B orbit.

Peculiarities of component interaction in {Gd, Er}-V-Sn Ternary systems at 870 K and crystal structure of RV6Sn6 stannides

International Nuclear Information System (INIS)

Romaka, L.; Stadnyk, Yu.; Romaka, V.V.; Demchenko, P.; Stadnyshyn, M.; Konyk, M.

2011-01-01

Highlights: → {Gd, Er}-V-Sn ternary systems at 870 K are characterized by formation of stannides with general compositions RV 6 Sn 6 . → Isostructural RV 6 Sn 6 compounds were also found with Y, Dy, Ho, Tm, and Lu. → The crystal structure of RV 6 Sn 6 compounds was determined by powder diffraction method. → Structural analysis showed that RV 6 Sn 6 compounds (R = Gd, Dy-Tm, Lu) are disordered; YV 6 Sn 6 is characterized by structure ordering. - Abstract: The phase equilibria in the Gd-V-Sn and Er-V-Sn ternary systems were studied at 870 K by means of X-ray and metallographic analyses in the whole concentration range. Both Gd-V-Sn and Er-V-Sn systems are characterized by formation of one ternary compound at investigated temperature, with stoichiometry RV 6 Sn 6 (SmMn 6 Sn 6 -type, space group P6/mmm, a = 0.55322(3) nm, c = 0.91949(7) nm for Gd, a = 0.55191(2) nm, c = 0.91869(8) nm for Er). Solubility of the third component in the binary compounds was not observed. Compounds with the SmMn 6 Sn 6 -type were also found with Dy, Ho, Tm, and Lu, while YV 6 Sn 6 compound crystallizes in HfFe 6 Ge 6 structure type. All investigated compounds are the first ternary stannides with rare earth elements and vanadium.

Development of Deterministic and Probabilistic Fracture Mechanics Analysis Code PROFAS-RV for Reactor Pressure Vessel - Progress of the Work

Energy Technology Data Exchange (ETDEWEB)

Kim, Jong Min; Lee, Bong Sang [KAERI, Daejeon (Korea, Republic of)

2016-05-15

In this study, a deterministic/probabilistic fracture mechanics analysis program for reactor pressure vessel, PROFAS-RV, is developed. This program can evaluate failure probability of RPV using recent radiation embrittlement model of 10CFR50.61a and stress intensity factor calculation method of RCC-MRx code as well as the required basic functions of PFM program. Applications of some new radiation embrittlement model, material database, calculation method of stress intensity factors, and others which can improve fracture mechanics assessment of RPV are introduced. The purpose of this study is to develop a probabilistic fracture mechanics (PFM) analysis program for RPV considering above modification and application of newly developed models and calculation methods. In this paper, it deals with the development progress of the PFM analysis program for RPV, PROFAS-RV. The PROFAS-RV is being tested with other codes, and it is expected to revise and upgrade by reflecting the latest model and calculation method continuously. These efforts can minimize the uncertainty of the integrity evaluation for the reactor pressure vessel.

Rotavirus specific maternal antibodies and immune response to RV3-BB neonatal rotavirus vaccine in New Zealand

Science.gov (United States)

Chen, Mee-Yew; Kirkwood, Carl D.; Bines, Julie; Cowley, Daniel; Pavlic, Daniel; Lee, Katherine J.; Orsini, Francesca; Watts, Emma; Barnes, Graeme; Danchin, Margaret

2017-01-01

ABSTRACT Background: Maternal antibodies, acquired passively via placenta and/or breast milk, may contribute to the reduced efficacy of oral rotavirus vaccines observed in children in developing countries. This study aimed to investigate the effect of rotavirus specific maternal antibodies on the serum IgA response or stool excretion of vaccine virus after any dose of an oral rotavirus vaccine, RV3-BB, in parallel to a Phase IIa clinical trial conducted at Dunedin Hospital, New Zealand. At the time of the study rotavirus vaccines had not been introduced in New Zealand and the burden of rotavirus disease was evident. Methods: Rotavirus specific IgG and serum neutralizing antibody (SNA) levels in cord blood and IgA levels in colostrum and breast milk samples collected ∼4 weeks, ∼20 weeks and ∼28 weeks after birth were measured. Infants were randomized to receive the first dose of vaccine at 0–5 d (neonatal schedule) or 8 weeks (infant schedule). Breast feeding was with-held for 30 minutes before and after vaccine administration. The relationship between rotavirus specific IgG and SNA levels in cord blood and IgA in colostrum and breast milk at the time of first active dose of RV3-BB vaccine and level of IgA response and stool excretion after 3 doses of vaccine was assessed using linear and logistic regression. Results: Forty infants received 3 doses of RV3-BB rotavirus vaccine and were included in the analysis of the neonatal and infant groups. Rotavirus specific IgA in colostrum (neonatal schedule group) and breast milk at 4 weeks (infant schedule group) was identified in 14/21 (67%) and 14/17 (82%) of infants respectively. There was little evidence of an association between IgA in colostrum or breast milk IgA at 4 weeks, or between cord IgG or SNA level, and IgA response or stool excretion after 3 doses of RV3-BB, or after one dose (neonatal schedule) (all p>0.05). Conclusions: The level of IgA in colostrum or breast milk and level of placental Ig

Rotavirus specific maternal antibodies and immune response to RV3-BB neonatal rotavirus vaccine in New Zealand.

Science.gov (United States)

Chen, Mee-Yew; Kirkwood, Carl D; Bines, Julie; Cowley, Daniel; Pavlic, Daniel; Lee, Katherine J; Orsini, Francesca; Watts, Emma; Barnes, Graeme; Danchin, Margaret

2017-05-04

Maternal antibodies, acquired passively via placenta and/or breast milk, may contribute to the reduced efficacy of oral rotavirus vaccines observed in children in developing countries. This study aimed to investigate the effect of rotavirus specific maternal antibodies on the serum IgA response or stool excretion of vaccine virus after any dose of an oral rotavirus vaccine, RV3-BB, in parallel to a Phase IIa clinical trial conducted at Dunedin Hospital, New Zealand. At the time of the study rotavirus vaccines had not been introduced in New Zealand and the burden of rotavirus disease was evident. Rotavirus specific IgG and serum neutralizing antibody (SNA) levels in cord blood and IgA levels in colostrum and breast milk samples collected ∼4 weeks, ∼20 weeks and ∼28 weeks after birth were measured. Infants were randomized to receive the first dose of vaccine at 0-5 d (neonatal schedule) or 8 weeks (infant schedule). Breast feeding was with-held for 30 minutes before and after vaccine administration. The relationship between rotavirus specific IgG and SNA levels in cord blood and IgA in colostrum and breast milk at the time of first active dose of RV3-BB vaccine and level of IgA response and stool excretion after 3 doses of vaccine was assessed using linear and logistic regression. Forty infants received 3 doses of RV3-BB rotavirus vaccine and were included in the analysis of the neonatal and infant groups. Rotavirus specific IgA in colostrum (neonatal schedule group) and breast milk at 4 weeks (infant schedule group) was identified in 14/21 (67%) and 14/17 (82%) of infants respectively. There was little evidence of an association between IgA in colostrum or breast milk IgA at 4 weeks, or between cord IgG or SNA level, and IgA response or stool excretion after 3 doses of RV3-BB, or after one dose (neonatal schedule) (all p>0.05). The level of IgA in colostrum or breast milk and level of placental IgG and SNA did not impact on the serum IgA response or

Medical Image of the Week: Cardiac Magnetic Resonance Imaging Findings of Severe RV Failure

Directory of Open Access Journals (Sweden)

Wickstrom K

2018-05-01

Full Text Available No abstract available. Article truncated at 150 words. A 56-year-old man with history a of alcohol abuse presents with progressive shortness of breath on exertion, bilateral lower extremity swelling and 12-pound weight gain over two weeks. His transthoracic echocardiography (Figure 1 demonstrated severely increased global right ventricle (RV size, severely dilated right atrium (RA, severe pulmonary artery (PA dilation, moderate tricuspid regurgitation (TR and right ventricular systolic pressure (RVSP estimated at 85 + central venous pressure (CVP in the context of severely reduced RV systolic function. Right heart catheterization (RHC showed PA pressure (systolic/diastolic, mean of 94/28, 51 mmHg with a PA occlusion pressure of 12 mmHg. After extensive evaluation, our patient’s presentation of right heart failure seemed to be a manifestation of idiopathic pulmonary arterial hypertension. Our patient subsequently had cardiac MRI (cMRI with findings shown above (Figure 2. CMRI is a valuable, three-dimensional imaging modality that provides detailed morphology of the cardiac chambers along with accurate …

Machine learning methods enable predictive modeling of antibody feature:function relationships in RV144 vaccinees.

Science.gov (United States)

Choi, Ickwon; Chung, Amy W; Suscovich, Todd J; Rerks-Ngarm, Supachai; Pitisuttithum, Punnee; Nitayaphan, Sorachai; Kaewkungwal, Jaranit; O'Connell, Robert J; Francis, Donald; Robb, Merlin L; Michael, Nelson L; Kim, Jerome H; Alter, Galit; Ackerman, Margaret E; Bailey-Kellogg, Chris

2015-04-01

The adaptive immune response to vaccination or infection can lead to the production of specific antibodies to neutralize the pathogen or recruit innate immune effector cells for help. The non-neutralizing role of antibodies in stimulating effector cell responses may have been a key mechanism of the protection observed in the RV144 HIV vaccine trial. In an extensive investigation of a rich set of data collected from RV144 vaccine recipients, we here employ machine learning methods to identify and model associations between antibody features (IgG subclass and antigen specificity) and effector function activities (antibody dependent cellular phagocytosis, cellular cytotoxicity, and cytokine release). We demonstrate via cross-validation that classification and regression approaches can effectively use the antibody features to robustly predict qualitative and quantitative functional outcomes. This integration of antibody feature and function data within a machine learning framework provides a new, objective approach to discovering and assessing multivariate immune correlates.

Machine learning methods enable predictive modeling of antibody feature:function relationships in RV144 vaccinees.

Directory of Open Access Journals (Sweden)

Ickwon Choi

2015-04-01

Full Text Available The adaptive immune response to vaccination or infection can lead to the production of specific antibodies to neutralize the pathogen or recruit innate immune effector cells for help. The non-neutralizing role of antibodies in stimulating effector cell responses may have been a key mechanism of the protection observed in the RV144 HIV vaccine trial. In an extensive investigation of a rich set of data collected from RV144 vaccine recipients, we here employ machine learning methods to identify and model associations between antibody features (IgG subclass and antigen specificity and effector function activities (antibody dependent cellular phagocytosis, cellular cytotoxicity, and cytokine release. We demonstrate via cross-validation that classification and regression approaches can effectively use the antibody features to robustly predict qualitative and quantitative functional outcomes. This integration of antibody feature and function data within a machine learning framework provides a new, objective approach to discovering and assessing multivariate immune correlates.

Hydrogen production by co-cultures of Lactobacillus and a photosynthetic bacterium, Rhodobacter sphaeroides RV

Energy Technology Data Exchange (ETDEWEB)

Asada, Yasuo; Ishimi, Katsuhiro [Department of General Education, College of Science and Technology, Nihon University, Narashinodai, Chiba 274-8501 (Japan); Tokumoto, Masaru; Aihara, Yasuyuki; Oku, Masayo; Kohno, Hideki [Department of Applied Molecular Chemistry, College of Industrial Technology, Nihon University, Izumi-cho, Chiba 275-8575 (Japan); Wakayama, Tatsuki; Miyake, Jun [Research Institute for Cell Engineering, National Institute of Advanced Industrial Science and Technology, Nakoji, Amagasaki, Hyogo 661-0974 (Japan); Tomiyama, Masamitsu [Genetic Diversity Department, National Institute of Agrobiological Science, Tsukuba, Ibaraki 305-8602 (Japan)

2006-09-15

Hydrogen production with glucose by using co-immobilized cultures of a lactic acid bacterium, Lactobacillus delbrueckii NBRC13953, and a photosynthetic bacterium, Rhodobacter sphaeroides RV, in agar gels was studied. Glucose was converted to hydrogen gas in a yield of 7.1mol of hydrogen per mole of glucose at a maximum under illuminated conditions. (author)

Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial.

Science.gov (United States)

Edlefsen, Paul T; Rolland, Morgane; Hertz, Tomer; Tovanabutra, Sodsai; Gartland, Andrew J; deCamp, Allan C; Magaret, Craig A; Ahmed, Hasan; Gottardo, Raphael; Juraska, Michal; McCoy, Connor; Larsen, Brendan B; Sanders-Buell, Eric; Carrico, Chris; Menis, Sergey; Kijak, Gustavo H; Bose, Meera; Arroyo, Miguel A; O'Connell, Robert J; Nitayaphan, Sorachai; Pitisuttithum, Punnee; Kaewkungwal, Jaranit; Rerks-Ngarm, Supachai; Robb, Merlin L; Kirys, Tatsiana; Georgiev, Ivelin S; Kwong, Peter D; Scheffler, Konrad; Pond, Sergei L Kosakovsky; Carlson, Jonathan M; Michael, Nelson L; Schief, William R; Mullins, James I; Kim, Jerome H; Gilbert, Peter B

2015-02-01

The RV144 clinical trial showed the partial efficacy of a vaccine regimen with an estimated vaccine efficacy (VE) of 31% for protecting low-risk Thai volunteers against acquisition of HIV-1. The impact of vaccine-induced immune responses can be investigated through sieve analysis of HIV-1 breakthrough infections (infected vaccine and placebo recipients). A V1/V2-targeted comparison of the genomes of HIV-1 breakthrough viruses identified two V2 amino acid sites that differed between the vaccine and placebo groups. Here we extended the V1/V2 analysis to the entire HIV-1 genome using an array of methods based on individual sites, k-mers and genes/proteins. We identified 56 amino acid sites or "signatures" and 119 k-mers that differed between the vaccine and placebo groups. Of those, 19 sites and 38 k-mers were located in the regions comprising the RV144 vaccine (Env-gp120, Gag, and Pro). The nine signature sites in Env-gp120 were significantly enriched for known antibody-associated sites (p = 0.0021). In particular, site 317 in the third variable loop (V3) overlapped with a hotspot of antibody recognition, and sites 369 and 424 were linked to CD4 binding site neutralization. The identified signature sites significantly covaried with other sites across the genome (mean = 32.1) more than did non-signature sites (mean = 0.9) (p analysis of the breakthrough infections in the RV144 trial, this work describes a set of statistical methods and tools applicable to analysis of breakthrough infection genomes in general vaccine efficacy trials for diverse pathogens.

Extracellular Sphingomyelinase Rv0888 of Mycobacterium tuberculosis Contributes to Pathological Lung Injury of Mycobacterium smegmatis in Mice via Inducing Formation of Neutrophil Extracellular Traps.

Science.gov (United States)

Dang, Guanghui; Cui, Yingying; Wang, Lei; Li, Tiantian; Cui, Ziyin; Song, Ningning; Chen, Liping; Pang, Hai; Liu, Siguo

2018-01-01

Mycobacterium tuberculosis is the causative agent of tuberculosis (TB), which mainly causes pulmonary injury and tubercles. Although macrophages are generally considered to harbor the main cells of M. tuberculosis , new evidence suggests that neutrophils are rapidly recruited to the infected lung. M. tuberculosis itself, or its early secreted antigenic target protein 6 (ESAT-6), can induce formation of neutrophil extracellular traps (NETs). However, NETs trap mycobacteria but are unable to kill them. The role of NETs' formation in the pathogenesis of mycobacteria remains unclear. Here, we report a new M. tuberculosis extracellular factor, bifunctional enzyme Rv0888, with both nuclease and sphingomyelinase activities. Rv0888 sphingomyelinase activity can induce NETs' formation in vitro and in the lung of the mice and enhance the colonization ability of Mycobacterium smegmatis in the lungs of mice. Mice infected by M. smegmatis harboring Rv0888 sphingomyelinase induced pathological injury and inflammation of the lung, which was mainly mediated by NETs, induced by Rv0888 sphingomyelinase, associated protein (myeloperoxidase) triggered caspase-3. In summary, the study sheds new light on the pathogenesis of mycobacteria and reveals a novel target for TB treatment.

2.5D global-disk oscillation models of the Be shell star ζ Tauri. I. Spectroscopic and polarimetric analysis

Science.gov (United States)

Escolano, C.; Carciofi, A. C.; Okazaki, A. T.; Rivinius, T.; Baade, D.; Štefl, S.

2015-04-01

Context. A large number of Be stars exhibit intensity variations of their violet and red emission peaks in their H i lines observed in emission. This is the so-called V/R phenomenon, usually explained by the precession of a one-armed spiral density perturbation in the circumstellar disk. That global-disk oscillation scenario was confirmed, both observationally and theoretically, in the previous series of two papers analyzing the Be shell star ζ Tauri. The vertically averaged (2D) global-disk oscillation model used at the time was able to reproduce the V/R variations observed in Hα, as well as the spatially resolved interferometric data from AMBER/VLTI. Unfortunately, that model failed to reproduce the V/R phase of Br15 and the amplitude of the polarization variation, suggesting that the inner disk structure predicted by the model was incorrect. Aims: The first aim of the present paper is to quantify the temporal variations of the shell-line characteristics of ζ Tauri. The second aim is to better understand the physics underlying the V/R phenomenon by modeling the shell-line variations together with the V/R and polarimetric variations. The third aim is to test a new 2.5D disk oscillation model, which solves the set of equations that describe the 3D perturbed disk structure but keeps only the equatorial (i.e., 2D) component of the solution. This approximation was adopted to allow comparisons with the previous 2D model, and as a first step toward a future 3D model. Methods: We carried out an extensive analysis of ζ Tauri's spectroscopic variations by measuring various quantities characterizing its Balmer line profiles: red and violet emission peak intensities (for Hα, Hβ, and Br15), depth and asymmetry of the shell absorption (for Hβ, Hγ, and Hδ), and the respective position (i.e., radial velocity) of each component. We attempted to model the observed variations by implementing in the radiative transfer code HDUST the perturbed disk structure computed with a

Overexpression of Adenylyl Cyclase Encoded by the Mycobacterium tuberculosis Rv2212 Gene Confers Improved Fitness, Accelerated Recovery from Dormancy and Enhanced Virulence in Mice

Directory of Open Access Journals (Sweden)

Margarita O. Shleeva

2017-08-01

Full Text Available Earlier we demonstrated that the adenylyl cyclase (AC encoded by the MSMEG_4279 gene plays a key role in the resuscitation and growth of dormant Mycobacterium smegmatis and that overexpression of this gene leads to an increase in intracellular cAMP concentration and prevents the transition of M. smegmatis from active growth to dormancy in an extended stationary phase accompanied by medium acidification. We surmised that the homologous Rv2212 gene of M. tuberculosis (Mtb, the main cAMP producer, plays similar physiological roles by supporting, under these conditions, the active state and reactivation of dormant bacteria. To test this hypothesis, we established Mtb strain overexpressing Rv2212 and compared its in vitro and in vivo growth characteristics with a control strain. In vitro, the AC-overexpressing pMindRv2212 strain demonstrated faster growth in a liquid medium, prolonged capacity to form CFUs and a significant delay or even prevention of transition toward dormancy. AC-overexpressing cells exhibited easier recovery from dormancy. In vivo, AC-overexpressing bacteria demonstrated significantly higher growth rates (virulence in the lungs and spleens of infected mice compared to the control strain, and, unlike the latter, killed mice in the TB-resistant strain before month 8 of infection. Even in the absence of selecting hygromycin B, all pMindRv2212 CFUs retained the Rv2212 insert during in vivo growth, strongly suggesting that AC overexpression is beneficial for bacteria. Taken together, our results indicate that cAMP supports the maintenance of Mtb cells vitality under unfavorable conditions in vitro and their virulence in vivo.

Dehalogenation of Haloalkanes by Mycobacterium tuberculosis H37Rv and Other Mycobacteria

Science.gov (United States)

Jesenská, Andrea; Sedlác̆ek, Ivo; Damborský, Jir̆í

2000-01-01

Haloalkane dehalogenases convert haloalkanes to their corresponding alcohols by a hydrolytic mechanism. To date, various haloalkane dehalogenases have been isolated from bacteria colonizing environments that are contaminated with halogenated compounds. A search of current databases with the sequences of these known haloalkane dehalogenases revealed the presence of three different genes encoding putative haloalkane dehalogenases in the genome of the human parasite Mycobacterium tuberculosis H37Rv. The ability of M. tuberculosis and several other mycobacterial strains to dehalogenate haloaliphatic compounds was therefore studied. Intact cells of M. tuberculosis H37Rv were found to dehalogenate 1-chlorobutane, 1-chlorodecane, 1-bromobutane, and 1,2-dibromoethane. Nine isolates of mycobacteria from clinical material and four strains from a collection of microorganisms were found to be capable of dehalogenating 1,2-dibromoethane. Crude extracts prepared from two of these strains, Mycobacterium avium MU1 and Mycobacterium smegmatis CCM 4622, showed broad substrate specificity toward a number of halogenated substrates. Dehalogenase activity in the absence of oxygen and the identification of primary alcohols as the products of the reaction suggest a hydrolytic dehalogenation mechanism. The presence of dehalogenases in bacterial isolates from clinical material, including the species colonizing both animal tissues and free environment, indicates a possible role of parasitic microorganisms in the distribution of degradation genes in the environment. PMID:10618227

Mindfulness og nærværende opmærksomhed i skole og daginstitution

DEFF Research Database (Denmark)

Nielsen, Anne Maj; Herskind, Mia

Mindfulness og nærværende opmærksomhed i skole og daginstitution Vi præsenterer resultater fra undersøgelser af, hvordan lærere og pædagoger lærer mindfulness og hvordan det får betydning for deres praksis og forholdemåder i pædagogik og undervisning. Undersøgelserne er kvalitative og i...

The 22Rv1 prostate cancer cell line carries mixed genetic ancestry: Implications for prostate cancer health disparities research using pre-clinical models.

Science.gov (United States)

Woods-Burnham, Leanne; Basu, Anamika; Cajigas-Du Ross, Christina K; Love, Arthur; Yates, Clayton; De Leon, Marino; Roy, Sourav; Casiano, Carlos A

2017-12-01

Understanding how biological factors contribute to prostate cancer (PCa) health disparities requires mechanistic functional analysis of specific genes or pathways in pre-clinical cellular and animal models of this malignancy. The 22Rv1 human prostatic carcinoma cell line was originally derived from the parental CWR22R cell line. Although 22Rv1 has been well characterized and used in numerous mechanistic studies, no racial identifier has ever been disclosed for this cell line. In accordance with the need for racial diversity in cancer biospecimens and recent guidelines by the NIH on authentication of key biological resources, we sought to determine the ancestry of 22RV1 and authenticate previously reported racial identifications for four other PCa cell lines. We used 29 established Ancestry Informative Marker (AIM) single nucleotide polymorphisms (SNPs) to conduct DNA ancestry analysis and assign ancestral proportions to a panel of five PCa cell lines that included 22Rv1, PC3, DU145, MDA-PCa-2b, and RC-77T/E. We found that 22Rv1 carries mixed genetic ancestry. The main ancestry proportions for this cell line were 0.41 West African (AFR) and 0.42 European (EUR). In addition, we verified the previously reported racial identifications for PC3 (0.73 EUR), DU145 (0.63 EUR), MDA-PCa-2b (0.73 AFR), and RC-77T/E (0.74 AFR) cell lines. Considering the mortality disparities associated with PCa, which disproportionately affect African American men, there remains a burden on the scientific community to diversify the availability of biospecimens, including cell lines, for mechanistic studies on potential biological mediators of these disparities. This study is beneficial by identifying another PCa cell line that carries substantial AFR ancestry. This finding may also open the door to new perspectives on previously published studies using this cell line. © 2017 Wiley Periodicals, Inc.

Spectral gamuts and spectral gamut mapping

Science.gov (United States)

Rosen, Mitchell R.; Derhak, Maxim W.

2006-01-01

All imaging devices have two gamuts: the stimulus gamut and the response gamut. The response gamut of a print engine is typically described in CIE colorimetry units, a system derived to quantify human color response. More fundamental than colorimetric gamuts are spectral gamuts, based on radiance, reflectance or transmittance units. Spectral gamuts depend on the physics of light or on how materials interact with light and do not involve the human's photoreceptor integration or brain processing. Methods for visualizing a spectral gamut raise challenges as do considerations of how to utilize such a data-set for producing superior color reproductions. Recent work has described a transformation of spectra reduced to 6-dimensions called LabPQR. LabPQR was designed as a hybrid space with three explicit colorimetric axes and three additional spectral reconstruction axes. In this paper spectral gamuts are discussed making use of LabPQR. Also, spectral gamut mapping is considered in light of the colorimetric-spectral duality of the LabPQR space.

Selgusid kirjanduse aastapreemiate saajad / Rein Veidemann ; komment. Karl Martin Sinijärv, Viivi Luik

Index Scriptorium Estoniae

Veidemann, Rein, 1946-

2006-01-01

Eesti Kultuurkapitali aastapreemiad: Kristiina Ehini luulekogu "Kaitseala" ja Jürgen Rooste luulekogu "Ilusaks inimeseks", Piret Raud "Sanna ja salakütid", Merle Karusoo näidend "Misjonärid", Madis Kõivu artiklikogumik "Luhta-minek". Tõlkepreemiad tõlkijatele Anu Saluäär, Heili Einasto, Lembi Loigu, Veronika Kivisilla, Risto Järv. Vabaauhind Käbi Laretei. Artiklipreemia Aare Pilv. Venekeelse autori kirjandusauhind Gohar Markosjan-Käsper, Svetlan Semenenko

Human Neonatal Rotavirus Vaccine (RV3-BB) to Target Rotavirus from Birth.

Science.gov (United States)

Bines, Julie E; At Thobari, Jarir; Satria, Cahya Dewi; Handley, Amanda; Watts, Emma; Cowley, Daniel; Nirwati, Hera; Ackland, James; Standish, Jane; Justice, Frances; Byars, Gabrielle; Lee, Katherine J; Barnes, Graeme L; Bachtiar, Novilia S; Viska Icanervilia, Ajeng; Boniface, Karen; Bogdanovic-Sakran, Nada; Pavlic, Daniel; Bishop, Ruth F; Kirkwood, Carl D; Buttery, Jim P; Soenarto, Yati

2018-02-22

A strategy of administering a neonatal rotavirus vaccine at birth to target early prevention of rotavirus gastroenteritis may address some of the barriers to global implementation of a rotavirus vaccine. We conducted a randomized, double-blind, placebo-controlled trial in Indonesia to evaluate the efficacy of an oral human neonatal rotavirus vaccine (RV3-BB) in preventing rotavirus gastroenteritis. Healthy newborns received three doses of RV3-BB, administered according to a neonatal schedule (0 to 5 days, 8 weeks, and 14 weeks of age) or an infant schedule (8 weeks, 14 weeks, and 18 weeks of age), or placebo. The primary analysis was conducted in the per-protocol population, which included only participants who received all four doses of vaccine or placebo within the visit windows, with secondary analyses performed in the intention-to-treat population, which included all participants who underwent randomization. Among the 1513 participants in the per-protocol population, severe rotavirus gastroenteritis occurred up to the age of 18 months in 5.6% of the participants in the placebo group (28 of 504 babies), in 1.4% in the neonatal-schedule vaccine group (7 of 498), and in 2.7% in the infant-schedule vaccine group (14 of 511). This resulted in a vaccine efficacy of 75% (95% confidence interval [CI], 44 to 91) in the neonatal-schedule group (PBill and Melinda Gates Foundation and others; Australian New Zealand Clinical Trials Registry number, ACTRN12612001282875 .).

ACCRETION AND MAGNETIC RECONNECTION IN THE CLASSICAL T TAURI BINARY DQ TAU

International Nuclear Information System (INIS)

Tofflemire, Benjamin M.; Mathieu, Robert D.; Ardila, David R.; Akeson, Rachel L.; Ciardi, David R.; Johns-Krull, Christopher; Herczeg, Gregory J.; Quijano-Vodniza, Alberto

2017-01-01

The theory of binary star formation predicts that close binaries ( a < 100 au) will experience periodic pulsed accretion events as streams of material form at the inner edge of a circumbinary disk (CBD), cross a dynamically cleared gap, and feed circumstellar disks or accrete directly onto the stars. The archetype for the pulsed accretion theory is the eccentric, short-period, classical T Tauri binary DQ Tau. Low-cadence (∼daily) broadband photometry has shown brightening events near most periastron passages, just as numerical simulations would predict for an eccentric binary. Magnetic reconnection events (flares) during the collision of stellar magnetospheres near periastron could, however, produce the same periodic, broadband behavior when observed at a one-day cadence. To reveal the dominant physical mechanism seen in DQ Tau’s low-cadence observations, we have obtained continuous, moderate-cadence, multiband photometry over 10 orbital periods, supplemented with 27 nights of minute-cadence photometry centered on four separate periastron passages. While both accretion and stellar flares are present, the dominant timescale and morphology of brightening events are characteristic of accretion. On average, the mass accretion rate increases by a factor of five near periastron, in good agreement with recent models. Large variability is observed in the morphology and amplitude of accretion events from orbit to orbit. We argue that this is due to the absence of stable circumstellar disks around each star, compounded by inhomogeneities at the inner edge of the CBD and within the accretion streams themselves. Quasiperiodic apastron accretion events are also observed, which are not predicted by binary accretion theory.

ACCRETION AND MAGNETIC RECONNECTION IN THE CLASSICAL T TAURI BINARY DQ TAU

Energy Technology Data Exchange (ETDEWEB)

Tofflemire, Benjamin M.; Mathieu, Robert D. [Department of Astronomy, University of Wisconsin–Madison, 475 North Charter Street, Madison, WI 53706 (United States); Ardila, David R. [The Aerospace Corporation, M2-266, El Segundo, CA 90245 (United States); Akeson, Rachel L.; Ciardi, David R. [NASA Exoplanet Science Institute, IPAC/Caltech, Pasadena, CA 91125 (United States); Johns-Krull, Christopher [Department of Physics and Astronomy, Rice University, Houston, TX 77005 (United States); Herczeg, Gregory J. [The Kavli Institute for Astronomy and Astrophysics, Peking University, Beijing 100871 (China); Quijano-Vodniza, Alberto [University of Nariño Observatory, Pasto, Nariño (Colombia)

2017-01-20

The theory of binary star formation predicts that close binaries ( a < 100 au) will experience periodic pulsed accretion events as streams of material form at the inner edge of a circumbinary disk (CBD), cross a dynamically cleared gap, and feed circumstellar disks or accrete directly onto the stars. The archetype for the pulsed accretion theory is the eccentric, short-period, classical T Tauri binary DQ Tau. Low-cadence (∼daily) broadband photometry has shown brightening events near most periastron passages, just as numerical simulations would predict for an eccentric binary. Magnetic reconnection events (flares) during the collision of stellar magnetospheres near periastron could, however, produce the same periodic, broadband behavior when observed at a one-day cadence. To reveal the dominant physical mechanism seen in DQ Tau’s low-cadence observations, we have obtained continuous, moderate-cadence, multiband photometry over 10 orbital periods, supplemented with 27 nights of minute-cadence photometry centered on four separate periastron passages. While both accretion and stellar flares are present, the dominant timescale and morphology of brightening events are characteristic of accretion. On average, the mass accretion rate increases by a factor of five near periastron, in good agreement with recent models. Large variability is observed in the morphology and amplitude of accretion events from orbit to orbit. We argue that this is due to the absence of stable circumstellar disks around each star, compounded by inhomogeneities at the inner edge of the CBD and within the accretion streams themselves. Quasiperiodic apastron accretion events are also observed, which are not predicted by binary accretion theory.

Medical Image of the Week: Cardiac Magnetic Resonance Imaging Findings of Severe RV Failure

OpenAIRE

Wickstrom K; Ateeli H; Chaudhary S

2018-01-01

No abstract available. Article truncated at 150 words. A 56-year-old man with history a of alcohol abuse presents with progressive shortness of breath on exertion, bilateral lower extremity swelling and 12-pound weight gain over two weeks. His transthoracic echocardiography (Figure 1) demonstrated severely increased global right ventricle (RV) size, severely dilated right atrium (RA), severe pulmonary artery (PA) dilation, moderate tricuspid regurgitation (TR) and right ventricular systo...

PHOTO-REVERBERATION MAPPING OF A PROTOPLANETARY ACCRETION DISK AROUND A T TAURI STAR

Energy Technology Data Exchange (ETDEWEB)

Meng, Huan Y. A.; Plavchan, Peter; Ciardi, David [Infrared Processing and Analysis Center, California Institute of Technology, MC 100-22, 770 S. Wilson Ave., Pasadena, CA 91125 (United States); Rieke, George H. [Lunar and Planetary Laboratory and Department of Planetary Sciences, University of Arizona, 1629 E. University Blvd., Tucson, AZ 85721 (United States); Cody, Ann Marie [NASA Ames Research Center, Moffett Field, CA 94035 (United States); Güth, Tina [Department of Physics, New Mexico Institute of Mining and Technology, 801 Leroy Pl., Socorro, NM 87801 (United States); Stauffer, John; Carey, Sean; Rebull, Luisa M. [Infrared Science Archive and Spitzer Science Center, Infrared Processing and Analysis Center, California Institute of Technology, MC 314-6, 1200 E. California Blvd., Pasadena, CA 91125 (United States); Covey, Kevin [Department of Physics and Astronomy, MS-9164, Western Washington University, 516 High St., Bellingham, WA 98225 (United States); Duran-Rojas, Maria C. [Instituto de Astronomía, Universidad Nacional Autónoma de México, Apartado Postal 106, 22800, Ensenada, Baja California, México (Mexico); Gutermuth, Robert A. [Department of Astronomy, University of Massachusetts, Amherst, MA 01003 (United States); Morales-Calderón, María, E-mail: hyameng@lpl.arizona.edu [Centro de Astrobiología, Departamento de Astrofísica, INTA-CSIC, P.O. Box 78, E-28691, ESAC Campus, Villanueva de la Cañada, Madrid (Spain); and others

2016-05-20

Theoretical models and spectroscopic observations of newborn stars suggest that protoplantary disks have an inner “wall” at a distance set by the disk interaction with the star. Around T Tauri stars, the size of this disk hole is expected to be on a 0.1 au scale that is unresolved by current adaptive optics imaging, though some model-dependent constraints have been obtained by near-infrared interferometry. Here we report the first measurement of the inner disk wall around a solar-mass young stellar object, YLW 16B in the ρ Ophiuchi star-forming region, by detecting the light-travel time of the variable radiation from the stellar surface to the disk. Consistent time lags were detected on two nights, when the time series in H (1.6 μ m) and K (2.2 μ m) bands were synchronized while the 4.5 μ m emission lagged by 74.5 ± 3.2 s. Considering the nearly edge-on geometry of the disk, the inner rim should be 0.084 au from the protostar on average, with an error of order 0.01 au. This size is likely larger than the range of magnetospheric truncations and consistent with an optically and geometrically thick disk front at the dust sublimation radius at ∼1500 K. The widths of the cross-correlation functions between the data in different wavebands place possible new constraints on the geometry of the disk.

Photo-reverberation Mapping of a Protoplanetary Accretion Disk around a T Tauri Star

Science.gov (United States)

Meng, Huan Y. A.; Plavchan, Peter; Rieke, George H.; Cody, Ann Marie; Güth, Tina; Stauffer, John; Covey, Kevin; Carey, Sean; Ciardi, David; Duran-Rojas, Maria C.; Gutermuth, Robert A.; Morales-Calderón, María; Rebull, Luisa M.; Watson, Alan M.

2016-05-01

Theoretical models and spectroscopic observations of newborn stars suggest that protoplantary disks have an inner “wall” at a distance set by the disk interaction with the star. Around T Tauri stars, the size of this disk hole is expected to be on a 0.1 au scale that is unresolved by current adaptive optics imaging, though some model-dependent constraints have been obtained by near-infrared interferometry. Here we report the first measurement of the inner disk wall around a solar-mass young stellar object, YLW 16B in the ρ Ophiuchi star-forming region, by detecting the light-travel time of the variable radiation from the stellar surface to the disk. Consistent time lags were detected on two nights, when the time series in H (1.6 μm) and K (2.2 μm) bands were synchronized while the 4.5 μm emission lagged by 74.5 ± 3.2 s. Considering the nearly edge-on geometry of the disk, the inner rim should be 0.084 au from the protostar on average, with an error of order 0.01 au. This size is likely larger than the range of magnetospheric truncations and consistent with an optically and geometrically thick disk front at the dust sublimation radius at ˜1500 K. The widths of the cross-correlation functions between the data in different wavebands place possible new constraints on the geometry of the disk.

Research Vessel R/V Sikuliaq: Joining the UNOLS Fleet in 2014

Science.gov (United States)

Whitledge, T. E.

2013-12-01

The global class research vessel R/V Sikuliaq is being constructed on behalf of the NSF to support future scientific studies in high latitude waters. The 261 foot vessel will be capable of breaking 2.5 foot thick ice at 2 knots with an endurance of 45 days at sea and cruising at 11 knots. The R/V Sikuliaq has a beam of 52 feet and a draft of 18.9 feet that will carry 26 scientists and a crew of 20. Berthing accommodations are a combination of single/double rooms with one stateroom and the common areas of the vessel are designed for ADA access and accommodations. The total laboratory space (main, analytical, electronics, wet, upper, and Baltic room are 2100 square feet. The 4360 square foot working deck that is approximately 70 feet in length will accommodate 2-4 vans and multiple science operations. The vessel design strives to have the lowest possible environmental impact, including a low underwater-radiated noise signature. The science systems are prescribed to be state-of-the-art for bottom mapping, over-the-side 'hands free' gear handling, broad band communications and scientific walk-in freezer and environmental chamber. More details and photos of the construction progress are available on the website at www.sfos.uaf.edu/arrv. The vessel was launched in October 2012 and delivery to the University of Alaska Fairbanks is scheduled for November 2013. Scientific operations following testing and science sea trials are planned to start in summer of 2014. Questions about the science systems or vessel capabilities should be directed to Terry Whitledge (terry@ims.uaf.edu).

Characterization of GafChromic XR-RV2 film and comparator strip using a flatbed scanner in reflection mode

International Nuclear Information System (INIS)

Mendoza-Moctezuma, A. I.; Aguilar, J. Garcia; Garcia-Garduno, O. A.

2010-01-01

Interventional cardiology procedures are an effective alternative for the reestablishment of correct sanguineous circulation in the heart. However, this kind of procedures exposes to the patients to a relatively high radiation doses. Usually, the surface peak skin dose is evaluated using a visual scale with a comparator strip, nevertheless, even if the comparator strip provides a simple and quick method for estimating the dose it has an uncertainty of ±25%. For this reason, a better evaluation method is needed. The objective of our project is to determine the surface peak skin dose of interventional cardiology procedures using GafChromic XR-RV2 film together with a commercial flatbed scanner in reflection mode. Here we report a protocol to handle GafChromic XR-RV2 film using a commercial flat bed scanner in reflection mode aiming at an uncertainty of ±3%.

Long-term behavior of the population II Cepheid V1 in the globular cluster Messier 12

International Nuclear Information System (INIS)

Clement, C.M.; Hogg, H.S.; Yee, A.

1988-01-01

Observations made over an interval of 73 yr have been used to study the period changes of the W Virginis star in M12. They show that the period has undergone a series of abrupt changes, both increasing and decreasing, instead of a smooth change as predicted by evolutionary theory. This result is compared with period changes of W Virginis and RV Tauri stars in other galactic globular clusters, and it is found that the long-term behavior of the periods of most of these stars is similar to that of the variable in M12. However, two stars, V42 in M5 and V1 in Omega Centauri, may be in their final blueward evolutionary phase. 45 references

On the Existence and Uniqueness of Rv-Generalized Solution for Dirichlet Problem with Singularity on All Boundary

Directory of Open Access Journals (Sweden)

V. Rukavishnikov

2014-01-01

Full Text Available The existence and uniqueness of the Rv-generalized solution for the first boundary value problem and a second order elliptic equation with coordinated and uncoordinated degeneracy of input data and with strong singularity solution on all boundary of a two-dimensional domain are established.

MN Lup: X-RAYS FROM A WEAKLY ACCRETING T TAURI STAR

International Nuclear Information System (INIS)

Günther, H. M.; Wolk, S. J.; Wolter, U.; Robrade, J.

2013-01-01

Young T Tauri stars (TTS) are surrounded by an accretion disk, which over time disperses due to photoevaporation, accretion, and possibly planet formation. The accretion shock on the central star produces an UV/optical veiling continuum, line emission, and X-ray signatures. As the accretion rate decreases, the impact on the central star must change. In this article we study MN Lup, a young star where no indications of a disk are seen in IR observations. We present XMM-Newton and VLT/UVES observations, some of them taken simultaneously. The X-ray data show that MN Lup is an active star with L X /L bol close to the saturation limit. However, we find high densities (n e > 3 × 10 10 cm –3 ) in the X-ray grating spectrum. This can be well fitted using an accretion shock model with an accretion rate of 2 × 10 –11 M ☉ yr –1 . Despite the simple Hα line profile which has a broad component, but no absorption signatures as typically seen on accreting TTS, we find rotational modulation in Ca II K and in photospheric absorption lines. These line profile modulations do not clearly indicate the presence of a localized hot accretion spot on the star. In the Hα line we see a prominence in absorption about 2R * above the stellar surface—the first of its kind on a TTS. MN Lup is also the only TTS where accretion is seen, but no dust disk is detected that could fuel it. We suggest that MN Lup presents a unique and short-lived state in the disk evolution. It may have lost its dust disk only recently and is now accreting the remaining gas at a very low rate.

Rv2969c, essential for optimal growth in Mycobacterium tuberculosis, is a DsbA-like enzyme that interacts with VKOR-derived peptides and has atypical features of DsbA-like disulfide oxidases

International Nuclear Information System (INIS)

Premkumar, Lakshmanane; Heras, Begoña; Duprez, Wilko; Walden, Patricia; Halili, Maria; Kurth, Fabian; Fairlie, David P.; Martin, Jennifer L.

2013-01-01

The gene product of M. tuberculosis Rv2969c is shown to be a disulfide oxidase enzyme that has a canonical DsbA-like fold with novel structural and functional characteristics. The bacterial disulfide machinery is an attractive molecular target for developing new antibacterials because it is required for the production of multiple virulence factors. The archetypal disulfide oxidase proteins in Escherichia coli (Ec) are DsbA and DsbB, which together form a functional unit: DsbA introduces disulfides into folding proteins and DsbB reoxidizes DsbA to maintain it in the active form. In Mycobacterium tuberculosis (Mtb), no DsbB homologue is encoded but a functionally similar but structurally divergent protein, MtbVKOR, has been identified. Here, the Mtb protein Rv2969c is investigated and it is shown that it is the DsbA-like partner protein of MtbVKOR. It is found that it has the characteristic redox features of a DsbA-like protein: a highly acidic catalytic cysteine, a highly oxidizing potential and a destabilizing active-site disulfide bond. Rv2969c also has peptide-oxidizing activity and recognizes peptide segments derived from the periplasmic loops of MtbVKOR. Unlike the archetypal EcDsbA enzyme, Rv2969c has little or no activity in disulfide-reducing and disulfide-isomerase assays. The crystal structure of Rv2969c reveals a canonical DsbA fold comprising a thioredoxin domain with an embedded helical domain. However, Rv2969c diverges considerably from other DsbAs, including having an additional C-terminal helix (H8) that may restrain the mobility of the catalytic helix H1. The enzyme is also characterized by a very shallow hydrophobic binding surface and a negative electrostatic surface potential surrounding the catalytic cysteine. The structure of Rv2969c was also used to model the structure of a paralogous DsbA-like domain of the Ser/Thr protein kinase PknE. Together, these results show that Rv2969c is a DsbA-like protein with unique properties and a limited

Rv2969c, essential for optimal growth in Mycobacterium tuberculosis, is a DsbA-like enzyme that interacts with VKOR-derived peptides and has atypical features of DsbA-like disulfide oxidases

Energy Technology Data Exchange (ETDEWEB)

Premkumar, Lakshmanane, E-mail: p.lakshmanane@imb.uq.edu.au; Heras, Begoña; Duprez, Wilko; Walden, Patricia; Halili, Maria; Kurth, Fabian; Fairlie, David P.; Martin, Jennifer L., E-mail: p.lakshmanane@imb.uq.edu.au [University of Queensland, St Lucia, QLD 4067 (Australia)

2013-10-01

The gene product of M. tuberculosis Rv2969c is shown to be a disulfide oxidase enzyme that has a canonical DsbA-like fold with novel structural and functional characteristics. The bacterial disulfide machinery is an attractive molecular target for developing new antibacterials because it is required for the production of multiple virulence factors. The archetypal disulfide oxidase proteins in Escherichia coli (Ec) are DsbA and DsbB, which together form a functional unit: DsbA introduces disulfides into folding proteins and DsbB reoxidizes DsbA to maintain it in the active form. In Mycobacterium tuberculosis (Mtb), no DsbB homologue is encoded but a functionally similar but structurally divergent protein, MtbVKOR, has been identified. Here, the Mtb protein Rv2969c is investigated and it is shown that it is the DsbA-like partner protein of MtbVKOR. It is found that it has the characteristic redox features of a DsbA-like protein: a highly acidic catalytic cysteine, a highly oxidizing potential and a destabilizing active-site disulfide bond. Rv2969c also has peptide-oxidizing activity and recognizes peptide segments derived from the periplasmic loops of MtbVKOR. Unlike the archetypal EcDsbA enzyme, Rv2969c has little or no activity in disulfide-reducing and disulfide-isomerase assays. The crystal structure of Rv2969c reveals a canonical DsbA fold comprising a thioredoxin domain with an embedded helical domain. However, Rv2969c diverges considerably from other DsbAs, including having an additional C-terminal helix (H8) that may restrain the mobility of the catalytic helix H1. The enzyme is also characterized by a very shallow hydrophobic binding surface and a negative electrostatic surface potential surrounding the catalytic cysteine. The structure of Rv2969c was also used to model the structure of a paralogous DsbA-like domain of the Ser/Thr protein kinase PknE. Together, these results show that Rv2969c is a DsbA-like protein with unique properties and a limited

Treatment of marine sewage pumpout and RV park pumpout wastewater containing high strength concentrations of formaldehyde

International Nuclear Information System (INIS)

Salonich, J.

2002-01-01

'Full text:' A consortium of companies has developed an integrated 'on-site' wastewater treatment technology that is capable of handling and degrading RV Park and Marine Sewage Pumpout Wastes which contain formaldehyde [35 - 80 mg/L]. Boat and RV owners add formaldehyde to their toilets to eliminate odors. When these materials are pumped out they are high in solids content and have high concentrations of HCHO, which makes them difficult to degrade at POTWs. At the heart of this process is 1. An aeration tank with a Venturi Aerator totally external to the tank and 2. The addition of a blend of cultured bacteria that have selected for their ability to degrade formaldehyde. For a complete 'on-site' treatment system Bioclere Trickling Filters can follow this aeration/bacterial treatment system. This is an ideal system configuration for remote locations (RV Parks) or for fresh water lake Marinas looking to reduce their disposal costs and for groundwater discharge with no adverse effect on water quality. Until the development of the formaldehyde degrading bacteria for an industrial wastewater process there were no cultures commercially available specifically for degrading formaldehyde. The most commonly used bacteria were pseudomonas strains for carbohydrate or hydrocarbon wastewater extracted from activated sludge plants. And since formaldehyde is infinitely soluble in a liquid it is difficult to degrade or mineralize. The process in an activated sludge WWTP plant took over 72 hours. With the newly selected consortia of cultures, HCHO can be degraded in 12-14 hours on a batch basis. This is accomplished in a uniquely configured aeration tank where the 'environment' of the tank is constantly conditioned by a Venturi Aerator which strips carbon dioxide generated by the aerobes to maintain a neutral pH, and provide high levels of DO (>5.0 mg/L) to keep the process aerobic. (author)

WATER TEMPERATURE and Other Data from R.V. MADIDIHANG and Other Platforms from 19780722 to 19780726 (NODC Accession 9700129)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton, temperature, hydrochemical, and other data were collected from bottle and nets casts in the South China Sea from the R/V Madidihang and other platforms...

Förvärmning av tilluften med återvunnen värme

OpenAIRE

Kader, Aza; Yousif, Peter

2017-01-01

Idag är det vanligt för fjärrvärmebolagen att basera sin taxa på effektbehovet för fastigheten. Effekttaxeringsmetod skiljer sig mellan olika fjärrvärmeleverantörer. Dock är toppeffektbehoven för fastigheterna en gemensam nämnare för bolagen när debiteringsunderlag beslutas.I Sverige finns det idag befintlig teknik som sänker effektbehovet genom förvärmning av uteluft, vilket reducerar frostbildning i värmeväxlaren och förbättras dess verkningsgrad. Denna teknik utnyttjar geoenergi som värmek...

The R/V Folger a Floating Laboratory: Teaching Marine Science Skills on Lake Champlain (Invited)

Science.gov (United States)

Manley, P.; Manley, T.

2013-12-01

Undergraduate senior work has been required at Middlebury College as far back as 1960's and hands-on experiential learning was and still is the mode for our geology courses. The history of Middlebury College having a research vessel started in the 1970's when Dave Folger started the marine component of our curriculum and obtained the first Middlebury College's research vessel - a coast guard rescue surf boat (Bruno Schmidt). The second Middlebury College research vessel, the R/V Baldwin was purchased in 1985 and was used exclusively in a river-like setting due to its open cockpit and minimal research equipment. In 1990, Middlebury College received a grant from NSF-MRI to upgrade the vessel, to a then state-of the-art small oceanographic vessel including new equipment (CTD, side-scan sonar, ROV, met station, coring devices, computers and navigation). Middlebury College contributed monies to enclose the wheelhouse, install safer diesel engines, as well as a winch and an A-frame to haul in equipment. Over 600+ students used the Baldwin in a variety of geology courses; mainly Oceanography and Marine Geology. In 2010, Middlebury College received an NSF -ARRA grant (American Recovery and Reinvestment Act) to replace the ailing R/V Baldwin with a floating state-of-the art laboratory with the specific goals of increasing 1) access to lake research for Middlebury faculty and students in the biological, chemical, and environmental sciences, 2) the scope of lake research by reducing transit times over this 100km long lake, 3) stability for broad-lake research, 4) improve and expand research capabilities on Lake Champlain, 5) the carrying capacity (both equipment and people), and 6) instructional capability and overnight capabilities. The newly built R/V Folger is a sophisticated research vessel with advanced capabilities that provides a greater capacity to the research infrastructure on Lake Champlain, enhancing interdisciplinary inquiry not only for Middlebury College, but

Hints for Small Disks around Very Low Mass Stars and Brown Dwarfs

Energy Technology Data Exchange (ETDEWEB)

Hendler, Nathanial P.; Mulders, Gijs D.; Pascucci, Ilaria [Lunar and Planetary Laboratory, The University of Arizona, Tucson, AZ 85721 (United States); Greenwood, Aaron; Kamp, Inga [Kapteyn Astronomical Institute, University of Groningen, Postbus 800, 9700 AV Groningen (Netherlands); Henning, Thomas [Max Planck Institute for Astronomy, Konigstuhl 17, D-69117 Heidelberg (Germany); Ménard, François [Univ. Grenoble Alpes, CNRS, IPAG, F-38000 Grenoble (France); Dent, William R. F. [Department of Engineering, Atacama Large Millimeter/submillimeter Array (ALMA) Santiago Central Offices, Alonso de Córdova 3107, Vitacura, Casilla 763 0355, Santiago (Chile); II, Neal J. Evans, E-mail: equant@lpl.arizona.edu [Department of Astronomy, The University of Texas at Austin, Austin, TX 78712 (United States)

2017-06-01

The properties of disks around brown dwarfs and very low mass stars (hereafter VLMOs) provide important boundary conditions on the process of planet formation and inform us about the numbers and masses of planets than can form in this regime. We use the Herschel Space Observatory PACS spectrometer to measure the continuum and [O i] 63 μ m line emission toward 11 VLMOs with known disks in the Taurus and Chamaeleon I star-forming regions. We fit radiative transfer models to the spectral energy distributions of these sources. Additionally, we carry out a grid of radiative transfer models run in a regime that connects the luminosity of our sources with brighter T Tauri stars. We find that VLMO disks with sizes 1.3–78 au, smaller than typical T Tauri disks, fit well the spectral energy distributions assuming that disk geometry and dust properties are stellar mass independent. Reducing the disk size increases the disk temperature, and we show that VLMOs do not follow previously derived disk temperature–stellar luminosity relationships if the disk outer radius scales with stellar mass. Only 2 out of 11 sources are detected in [O i] despite a better sensitivity than was achieved for T Tauri stars, suggesting that VLMO disks are underluminous. Using thermochemical models, we show that smaller disks can lead to the unexpected [O i] 63 μ m nondetections in our sample. The disk outer radius is an important factor in determining the gas and dust observables. Hence, spatially resolved observations with ALMA—to establish if and how disk radii scale with stellar mass—should be pursued further.

Hints for Small Disks around Very Low Mass Stars and Brown Dwarfs

International Nuclear Information System (INIS)

Hendler, Nathanial P.; Mulders, Gijs D.; Pascucci, Ilaria; Greenwood, Aaron; Kamp, Inga; Henning, Thomas; Ménard, François; Dent, William R. F.; II, Neal J. Evans

2017-01-01

The properties of disks around brown dwarfs and very low mass stars (hereafter VLMOs) provide important boundary conditions on the process of planet formation and inform us about the numbers and masses of planets than can form in this regime. We use the Herschel Space Observatory PACS spectrometer to measure the continuum and [O i] 63 μ m line emission toward 11 VLMOs with known disks in the Taurus and Chamaeleon I star-forming regions. We fit radiative transfer models to the spectral energy distributions of these sources. Additionally, we carry out a grid of radiative transfer models run in a regime that connects the luminosity of our sources with brighter T Tauri stars. We find that VLMO disks with sizes 1.3–78 au, smaller than typical T Tauri disks, fit well the spectral energy distributions assuming that disk geometry and dust properties are stellar mass independent. Reducing the disk size increases the disk temperature, and we show that VLMOs do not follow previously derived disk temperature–stellar luminosity relationships if the disk outer radius scales with stellar mass. Only 2 out of 11 sources are detected in [O i] despite a better sensitivity than was achieved for T Tauri stars, suggesting that VLMO disks are underluminous. Using thermochemical models, we show that smaller disks can lead to the unexpected [O i] 63 μ m nondetections in our sample. The disk outer radius is an important factor in determining the gas and dust observables. Hence, spatially resolved observations with ALMA—to establish if and how disk radii scale with stellar mass—should be pursued further.

Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri.

Directory of Open Access Journals (Sweden)

Quentin Thommen

Full Text Available The development of systemic approaches in biology has put emphasis on identifying genetic modules whose behavior can be modeled accurately so as to gain insight into their structure and function. However, most gene circuits in a cell are under control of external signals and thus, quantitative agreement between experimental data and a mathematical model is difficult. Circadian biology has been one notable exception: quantitative models of the internal clock that orchestrates biological processes over the 24-hour diurnal cycle have been constructed for a few organisms, from cyanobacteria to plants and mammals. In most cases, a complex architecture with interlocked feedback loops has been evidenced. Here we present the first modeling results for the circadian clock of the green unicellular alga Ostreococcus tauri. Two plant-like clock genes have been shown to play a central role in the Ostreococcus clock. We find that their expression time profiles can be accurately reproduced by a minimal model of a two-gene transcriptional feedback loop. Remarkably, best adjustment of data recorded under light/dark alternation is obtained when assuming that the oscillator is not coupled to the diurnal cycle. This suggests that coupling to light is confined to specific time intervals and has no dynamical effect when the oscillator is entrained by the diurnal cycle. This intriguing property may reflect a strategy to minimize the impact of fluctuations in daylight intensity on the core circadian oscillator, a type of perturbation that has been rarely considered when assessing the robustness of circadian clocks.

Perfil de temperatura dos funis magnetosféricos de estrelas T Tauri com aquecimento alfvênico

Science.gov (United States)

Vasconcelos, M. J.

2003-08-01

Estrelas T Tauri Clássicas são objetos jovens circundados por discos de gás e poeira e que apresentam uma intensa atividade magnética. Seu espectro mostra linhas de emissão alargadas que são razoavelmente reproduzidas nos modelos de acresção magnetosférica. No entanto, o perfil de temperatura dos funis magnéticos é desconhecido. Aquecimento magnético compressional e difusão ambipolar foram considerados para estas estruturas, porém as temperaturas obtidas não são suficientes para explicar as observações. Neste trabalho, examinamos o aquecimento gerado pelo amortecimento de ondas Alfvén através de quatro mecanismos, os amortecimentos não-linear, turbulento, viscoso-resistivo e colisional como função da freqüência da onda. Inicialmente, a temperatura é ajustada para reproduzir as observações e o grau de turbulência requerido para que o mecanismo seja viável é calculado. Os resultados mostram que este é compatível com os dados observacionais. Apresentam-se, também, resultados preliminares do cálculo auto-consistente do perfil de temperatura dos funis, levando-se em conta fontes de aquecimento Alfvênica e fontes de resfriamento.

VizieR Online Data Catalog: UV spectra of classical T Tauri stars (France+, 2014)

Science.gov (United States)

France, K.; Schindhelm, E.; Bergin, E. A.; Roueff, E.; Abgrall, H.

2017-06-01

We present 16 objects from the larger GTO + DAO T Tauri star samples described by Ardila et al. (2013ApJS..207....1A; focusing on the hot gas emission lines) and France et al. (2012, J/ApJ/756/171; focusing on the molecular circumstellar environment). Eleven of the 16 sources were observed as part of the DAO of Tau guest observing program (PID 11616; PI: G. Herczeg), four were part of the COS Guaranteed Time Observing program on protoplanetary disks (PIDs 11533 and 12036; PI: J. Green), and we have included archival STIS observations of the well-studied CTTS TW Hya (Herczeg et al. 2002ApJ...572..310H, 2004ApJ...607..369H), obtained through StarCAT (Ayres 2010, J/ApJS/187/149). The targets were selected by the availability of reconstructed Lyα spectra, as this emission line is a critical component to the intrinsic CTTS UV radiation field (Schindhelm et al. 2012ApJ...756L..23S) and has not been uniformly included in recent studies of the CTTS radiation field (e.g., Ingleby et al. 2011AJ....141..127I; Yang et al. 2012, J/ApJ/744/121). Most of the targets were observed with the medium-resolution FUV modes of COS (G130M and G160M; Green et al. 2012ApJ...744...60G). (2 data files).

Multimodal actions of the phytochemical sulforaphane suppress both AR and AR-V7 in 22Rv1 cells: Advocating a potent pharmaceutical combination against castration-resistant prostate cancer.

Science.gov (United States)

Khurana, Namrata; Kim, Hogyoung; Chandra, Partha K; Talwar, Sudha; Sharma, Pankaj; Abdel-Mageed, Asim B; Sikka, Suresh C; Mondal, Debasis

2017-11-01

Prostate cancer (PCa) cells expressing full-length androgen receptor (AR-FL) are susceptible to androgen deprivation therapy (ADT). However, outgrowth of castration-resistant prostate cancer (CRPC) can occur due to the expression of constitutively active (ligand-independent) AR splice variants, particularly AR-V7. We previously demonstrated that sulforaphane (SFN), an isothiocyanate phytochemical, can decrease AR-FL levels in the PCa cell lines, LNCaP and C4-2B. Here, we examined the efficacy of SFN in targeting both AR-FL and AR-V7 in the CRPC cell line, CWR22Rv1 (22Rv1). MTT cell viability, wound-heal assay, and colony forming unit (CFU) measurements revealed that 22Rv1 cells are resistant to the anti-androgen, enzalutamide (ENZ). However, co-exposure to SFN sensitized these cells to the potent anticancer effects of ENZ (PAR-FL and AR-V7 levels, and immunofluorescence microscopy (IFM) depicted decreased AR in both cytoplasm and nucleus with SFN treatment. SFN increased both ubiquitination and proteasomal activity in 22Rv1 cells. Studies using a protein synthesis inhibitor (cycloheximide) or a proteasomal inhibitor (MG132) indicated that SFN increases both ubiquitin-mediated aggregation and subsequent proteasomal-degradation of AR proteins. Previous studies reported that SFN inhibits the chaperone activity of heat-shock protein 90 (Hsp90) and induces the nuclear factor erythroid-2-like 2 (Nrf2) transcription factor. Therefore, we investigated whether the Hsp90 inhibitor, ganetespib (G) or the Nrf2 activator, bardoxolone methyl (BM) can similarly suppress AR levels in 22Rv1 cells. Low doses of G and BM, alone or in combination, decreased both AR-FL and AR-V7 levels, and combined exposure to G+BM sensitized 22Rv1 cells to ENZ. Therefore, adjunct treatment with the phytochemical SFN or a safe pharmaceutical combination of G+BM may be effective against CRPC cells, especially those expressing AR-V7.

Research Vessel R/V Sikuliaq: A New Asset For The UNOLS Fleet

Science.gov (United States)

Whitledge, T. E.

2012-12-01

The research vessel R/V Sikuliaq is currently being constructed on behalf of the NSF to support future scientific studies in high latitude waters. The 261 foot global class vessel will be capable of breaking 2.5 foot thick ice at 2 knots with an endurance of 45 days at sea and cruising at 11 knots. The R/V Sikuliaq will have a beam of 52 feet and a draft of 18.9 feet that will carry 26 scientists and a crew of 20. Berthing accommodations are a combination of single/double rooms with one stateroom and the common areas of the vessel are designed for ADA access and accommodations. The total laboratory space (main, analytical, electronics, wet, upper, and Baltic room will be 2100 square feet. The 4360 square foot working deck that is approximately 70 feet in length will accommodate 2-4 vans and multiple science operations. The vessel design strives to have the lowest possible environmental impact, including a low underwater-radiated noise signature. The science systems are prescribed to be state-of-the-art for bottom mapping, over-the-side "hands free" gear handling, broad band communications and scientific walk-in freezer and environmental chamber. More details and photos of the construction progress are available on the website at www.sfos.uaf.edu/arrv. The shipyard schedule has a launch date of October 2012 and delivery to the University of Alaska Fairbanks in July 2013. Scientific operations following trials and testing is planned to start in January 2014. Questions about the science systems or vessel capabilities should be directed to Terry Whitledge (terry@ims.uaf.edu).;

Eco RV RFLP at the insulin-like growth factor I (IGF I) locus on chromosome 12

Energy Technology Data Exchange (ETDEWEB)

Schneid, H; Noguiez, P; Girard, F; Binoux, M; Le Bouc, Y [INSERM U 142, Paris (France)

1988-09-26

The human liver IFG I cDNA insert from the {lambda}TG03 (1) was subcloned in PGEM4 (pTG 3906). The 660 bp Eco RI-Bam HI fragment containing the 5{prime} untranslated, the coding and the 3{prime} untranslated region of the IGF IA gene (exons 1, 2, 3 and 5) was used. Eco RV digestion of genomic DNA and hybridization with the IGF I probe reveals invariant fragments of 20; 8, 7 and 5 kb and polymorphic fragments of 13 kb (allele 1) and 11, 5 kb (allele 2). The frequency of alleles was studied in 51 unrelated European Caucasians. Co-dominant segregation was observed in 2 European families (9 individuals). Hind III and Pvu II digestions show previous described RFLP. Allelic frequencies however were: Hind III (5, 2 kb allele = 0, 14 and 4, 9 kb allele = 0, 86) and Pvu II (5 kb allele = 0, 14 and 4, 7 kb allele = 0, 86). Hind III and Pvu II RFLPs are linked. Among the DNA of the 14 individuals, where Eco RV RFLP was found, only one exhibited Hind III and Pvu II RFLPs.

ASIAEX, East China Sea, Cruise Report of the Activities of the R/V Melville, 29 May to 9 June 2001

National Research Council Canada - National Science Library

Dahl, Peter

2001-01-01

Science teams from APL-UW, MPL-SIO, and URI deployed a constellation of instruments from the R/V Melville to measure acoustic propagation and scattering over a broad frequency range (100 Hz to 20 kHz...

Deep down: Isopod biodiversity of the Kuril-Kamchatka abyssal area including a comparison with data of previous expeditions of the RV Vityaz

Science.gov (United States)

Elsner, Nikolaus O.; Malyutina, Marina V.; Golovan, Olga A.; Brenke, Nils; Riehl, Torben; Brandt, Angelika

2015-01-01

This study focusses on the isopod biodiversity in the abyssal area southeast of the Kuril-Kamchatka Trench. The KuramBio (Kuril-Kamchatka Biodiversity Studies) expedition in summer 2012 collected altogether 10,169 isopods from 21 C-EBS hauls at 12 stations, belonging to 19 families, 73 genera and 207 species from the depth range between 4830 and 5780 m. Munnopsidae and Desmosomatidae were the most abundant and species-rich families, Eurycope (Munnopsidae) and Macrostylis (Macrostylidae) the most abundant genera. An nMDS plot on the basis of the Cosine similarity index reveals no clear pattern and all hauls to be different from each other. We compared our data with 12 stations from the same depth range sampled by the Russian RV Vityaz about 50 years ago and were able to identify several species collected by the RV Vityaz. The identified isopod species belonged to the families Munnopsidae, Macrostylidae, Haploniscidae, Desmosomatidae, Ischnomesidae and Nannoniscidae. Of the 333 individuals collected by the RV Vityaz, Haploniscidae and Munnopsidae were the most abundant families. Desmosomatidae were only represented by rarefaction curves of both the KuramBio and the Vityaz samples are not approaching an asymptote, indicating that even after repeated sampling just a part of the local fauna has been recorded so far.

Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab).

Science.gov (United States)

Varsos, Constantinos; Patkos, Theodore; Oulas, Anastasis; Pavloudi, Christina; Gougousis, Alexandros; Ijaz, Umer Zeeshan; Filiopoulou, Irene; Pattakos, Nikolaos; Vanden Berghe, Edward; Fernández-Guerra, Antonio; Faulwetter, Sarah; Chatzinikolaou, Eva; Pafilis, Evangelos; Bekiari, Chryssoula; Doerr, Martin; Arvanitidis, Christos

2016-01-01

Parallel data manipulation using R has previously been addressed by members of the R community, however most of these studies produce ad hoc solutions that are not readily available to the average R user. Our targeted users, ranging from the expert ecologist/microbiologists to computational biologists, often experience difficulties in finding optimal ways to exploit the full capacity of their computational resources. In addition, improving performance of commonly used R scripts becomes increasingly difficult especially with large datasets. Furthermore, the implementations described here can be of significant interest to expert bioinformaticians or R developers. Therefore, our goals can be summarized as: (i) description of a complete methodology for the analysis of large datasets by combining capabilities of diverse R packages, (ii) presentation of their application through a virtual R laboratory (RvLab) that makes execution of complex functions and visualization of results easy and readily available to the end-user. In this paper, the novelty stems from implementations of parallel methodologies which rely on the processing of data on different levels of abstraction and the availability of these processes through an integrated portal. Parallel implementation R packages, such as the pbdMPI (Programming with Big Data - Interface to MPI) package, are used to implement Single Program Multiple Data (SPMD) parallelization on primitive mathematical operations, allowing for interplay with functions of the vegan package. The dplyr and RPostgreSQL R packages are further integrated offering connections to dataframe like objects (databases) as secondary storage solutions whenever memory demands exceed available RAM resources. The RvLab is running on a PC cluster, using version 3.1.2 (2014-10-31) on a x86_64-pc-linux-gnu (64-bit) platform, and offers an intuitive virtual environmet interface enabling users to perform analysis of ecological and microbial communities based on

CTD data from R/V Kilo Moana Cruise KM1123 during 2011-08 north of Hawaii (NODC Accession 0125443)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Profiles were taken with a Sea-Bird SBE-911 plus CTD from the R/V Kilo Moana on cruise KM1123 2011-08-11 to 2011-08-25 in the vicinity of Station ALOHA, the Hawaii...

Peculiarities of component interaction in {l_brace}Gd, Er{r_brace}-V-Sn Ternary systems at 870 K and crystal structure of RV{sub 6}Sn{sub 6} stannides

Energy Technology Data Exchange (ETDEWEB)

Romaka, L., E-mail: romakal@franko.lviv.ua [Inorganic Chemistry Department, Ivan Franko Lviv National University, Kyryla and Mefodiya str. 6, 79005 Lviv (Ukraine); Stadnyk, Yu. [Inorganic Chemistry Department, Ivan Franko Lviv National University, Kyryla and Mefodiya str. 6, 79005 Lviv (Ukraine); Romaka, V.V. [Department of Materials Engineering and Applied Physics, Lviv Polytechnic National University, Ustyyanovycha Str. 5, 79013 Lviv (Ukraine); Demchenko, P.; Stadnyshyn, M.; Konyk, M. [Inorganic Chemistry Department, Ivan Franko Lviv National University, Kyryla and Mefodiya str. 6, 79005 Lviv (Ukraine)

2011-09-08

Highlights: > {l_brace}Gd, Er{r_brace}-V-Sn ternary systems at 870 K are characterized by formation of stannides with general compositions RV{sub 6}Sn{sub 6}. > Isostructural RV{sub 6}Sn{sub 6} compounds were also found with Y, Dy, Ho, Tm, and Lu. > The crystal structure of RV{sub 6}Sn{sub 6} compounds was determined by powder diffraction method. > Structural analysis showed that RV{sub 6}Sn{sub 6} compounds (R = Gd, Dy-Tm, Lu) are disordered; YV{sub 6}Sn{sub 6} is characterized by structure ordering. - Abstract: The phase equilibria in the Gd-V-Sn and Er-V-Sn ternary systems were studied at 870 K by means of X-ray and metallographic analyses in the whole concentration range. Both Gd-V-Sn and Er-V-Sn systems are characterized by formation of one ternary compound at investigated temperature, with stoichiometry RV{sub 6}Sn{sub 6} (SmMn{sub 6}Sn{sub 6}-type, space group P6/mmm, a = 0.55322(3) nm, c = 0.91949(7) nm for Gd, a = 0.55191(2) nm, c = 0.91869(8) nm for Er). Solubility of the third component in the binary compounds was not observed. Compounds with the SmMn{sub 6}Sn{sub 6}-type were also found with Dy, Ho, Tm, and Lu, while YV{sub 6}Sn{sub 6} compound crystallizes in HfFe{sub 6}Ge{sub 6} structure type. All investigated compounds are the first ternary stannides with rare earth elements and vanadium.

Revisiting host preference in the Mycobacterium tuberculosis complex: experimental infection shows M. tuberculosis H37Rv to be avirulent in cattle.

Directory of Open Access Journals (Sweden)

Adam O Whelan

Full Text Available Experiments in the late 19th century sought to define the host specificity of the causative agents of tuberculosis in mammals. Mycobacterium tuberculosis, the human tubercle bacillus, was independently shown by Smith, Koch, and von Behring to be avirulent in cattle. This finding was erroneously used by Koch to argue the converse, namely that Mycobacterium bovis, the agent of bovine tuberculosis, was avirulent for man, a view that was subsequently discredited. However, reports in the literature of M. tuberculosis isolation from cattle with tuberculoid lesions suggests that the virulence of M. tuberculosis for cattle needs to be readdressed. We used an experimental bovine infection model to test the virulence of well-characterized strains of M. tuberculosis and M. bovis in cattle, choosing the genome-sequenced strains M. tuberculosis H37Rv and M. bovis 2122/97. Cattle were infected with approximately 10(6 CFU of M. tuberculosis H37Rv or M. bovis 2122/97, and sacrificed 17 weeks post-infection. IFN-gamma and tuberculin skin tests indicated that both M. bovis 2122 and M. tuberculosis H37Rv were equally infective and triggered strong cell-mediated immune responses, albeit with some indication of differential antigen-specific responses. Postmortem examination revealed that while M. bovis 2122/97-infected animals all showed clear pathology indicative of bovine tuberculosis, the M. tuberculosis-infected animals showed no pathology. Culturing of infected tissues revealed that M. tuberculosis was able to persist in the majority of animals, albeit at relatively low bacillary loads. In revisiting the early work on host preference across the M. tuberculosis complex, we have shown M. tuberculosis H37Rv is avirulent for cattle, and propose that the immune status of the animal, or genotype of the infecting bacillus, may have significant bearing on the virulence of a strain for cattle. This work will serve as a baseline for future studies into the genetic basis

Antigenicity and Immunogenicity of RV144 Vaccine AIDSVAX Clade E Envelope Immunogen Is Enhanced by a gp120 N-Terminal Deletion

Science.gov (United States)

Liao, Hua-Xin; Tomaras, Georgia D.; Bonsignori, Mattia; Tsao, Chun-Yen; Hwang, Kwan-Ki; Chen, Haiyan; Lloyd, Krissey E.; Bowman, Cindy; Sutherland, Laura; Jeffries, Thomas L.; Kozink, Daniel M.; Stewart, Shelley; Anasti, Kara; Jaeger, Frederick H.; Parks, Robert; Yates, Nicole L.; Overman, R. Glenn; Sinangil, Faruk; Berman, Phillip W.; Pitisuttithum, Punnee; Kaewkungwal, Jaranit; Nitayaphan, Sorachai; Karasavva, Nicos; Rerks-Ngarm, Supachai; Kim, Jerome H.; Michael, Nelson L.; Zolla-Pazner, Susan; Santra, Sampa; Letvin, Norman L.; Harrison, Stephen C.

2013-01-01

An immune correlates analysis of the RV144 HIV-1 vaccine trial revealed that antibody responses to the gp120 V1/V2 region correlated inversely with infection risk. The RV144 protein immunogens (A244-rp120 and MN-rgp120) were modified by an N-terminal 11-amino-acid deletion (Δ11) and addition of a herpes simplex virus (HSV) gD protein-derived tag (gD). We investigated the effects of these modifications on gp120 expression, antigenicity, and immunogenicity by comparing unmodified A244 gp120 with both Δ11 deletion and gD tag and with Δ11 only. Analysis of A244 gp120, with or without Δ11 or gD, demonstrated that the Δ11 deletion, without the addition of gD, was sufficient for enhanced antigenicity to gp120 C1 region, conformational V2, and V1/V2 gp120 conformational epitopes. RV144 vaccinee serum IgGs bound more avidly to A244 gp120 Δ11 than to the unmodified gp120, and their binding was blocked by C1, V2, and V1/V2 antibodies. Rhesus macaques immunized with the three different forms of A244 gp120 proteins gave similar levels of gp120 antibody titers, although higher antibody titers developed earlier in A244 Δ11 gp120-immunized animals. Conformational V1/V2 monoclonal antibodies (MAbs) gave significantly higher levels of blocking of plasma IgG from A244 Δ11 gp120-immunized animals than IgG from animals immunized with unmodified A244 gp120, thus indicating a qualitative difference in the V1/V2 antibodies induced by A244 Δ11 gp120. These results demonstrate that deletion of N-terminal residues in the RV144 A244 gp120 immunogen improves both envelope antigenicity and immunogenicity. PMID:23175357

Mycobacterium tuberculosis PPE44 (Rv2770c) is involved in response to multiple stresses and promotes the macrophage expression of IL-12 p40 and IL-6 via the p38, ERK, and NF-κB signaling axis.

Science.gov (United States)

Yu, Zhaoxiao; Zhang, Chenhui; Zhou, Mingliang; Li, Qiming; Li, Hui; Duan, Wei; Li, Xue; Feng, Yonghong; Xie, Jianping

2017-09-01

Tuberculosis (TB), caused by Mycobacterium tuberculosis, remains a formidable threat to global public health. The successful intracellular persistence of M. tuberculosis significantly contributes to the intractability of tuberculosis. Proline-glutamic acid (PE) and proline-proline-glutamic acid (PPE) are mycobacterial exclusive protein families that widely reported to be involved in the bacterial virulence, physiology and interaction with host. Rv2770c (PPE44), a predicted virulence factor, was up-regulated upon the infected guinea pig lungs. To investigate the role of Rv2770c, we heterologously expressed the PPE44 in the nonpathogenic fast-growing M. smegmatis strain. Subcellular location analysis demonstrated that Rv2770c is a cell wall associated protein, suggestive of a potential candidate involved in host-pathogen interaction. The Rv2770c can enhance M. smegmatis survival within macrophages and under stresses such as H 2 O 2 , SDS, diamide exposure, and low pH condition. M. smegmatis expressing Rv2770c is more virulent as testified by the increased death of macrophages and the increased expression of interlukin-6 (IL-6) and interlukin-12p40 (IL-12p40). Moreover, Rv2770c altered the secretion of IL-6 and IL-12p40 of macrophages via NF-κB, ERK1/2 and p38 MAPK axis. Taken together, this study implicated that Rv2770c was a virulent factor actively engaged in the interaction with host macrophage. Copyright © 2017. Published by Elsevier B.V.

Understanding Soliton Spectral Tunneling as a Spectral Coupling Effect

DEFF Research Database (Denmark)

Guo, Hairun; Wang, Shaofei; Zeng, Xianglong

2013-01-01

Soliton eigenstate is found corresponding to a dispersive phase profile under which the soliton phase changes induced by the dispersion and nonlinearity are instantaneously counterbalanced. Much like a waveguide coupler relying on a spatial refractive index profile that supports mode coupling...... between channels, here we suggest that the soliton spectral tunneling effect can be understood supported by a spectral phase coupler. The dispersive wave number in the spectral domain must have a coupler-like symmetric profile for soliton spectral tunneling to occur. We show that such a spectral coupler...

Structural and Biophysical Characterization of the Mycobacterium tuberculosis Protein Rv0577, a Protein Associated with Neutral Red Staining of Virulent Tuberculosis Strains and Homologue of the Streptomyces coelicolor Protein KbpA

Energy Technology Data Exchange (ETDEWEB)

Buchko, Garry W.; Echols, Nathaniel; Flynn, E. M.; Ng, Ho-Leung; Stephenson, Sam; Kim, Heungbok; Myler, Peter J.; Terwilliger, Thomas C.; Alber, Tom; Kim, Chang Y.

2017-07-25

The 261-residue Mycobacterium tuberculosis protein Rv0577 is a prominent antigen in tuberculosis patients, the responsible component for neutral red staining of virulent strains of M. tuberculosis, a putative component in a methylglyoxal detoxification pathway, and an agonist of toll-like receptor 2. It also has 36% sequence identity to AfsK-binding protein A (KbpA), a component in the complex secondary metabolite pathways in the Streptomycetes genus from which many commercial antibiotics are derived. To gain insight into the biological function of Rv0577 and the family of KpbA kinase regulators, the crystal structure for Rv0577 was determined to a resolution of 1.75 Å (3OXH), binding properties with neutral red and deoxyadenosine (Ado) surveyed, backbone dynamics measured, and thermal stability assayed by CD spectroscopy. The protein is composed of four approximate repeats with an topology arranged radially in consecutive pairs to form two continuous eight-strand -sheets capped on both ends with an -helix. The two -sheets intersect in the center at roughly a right angle and form an asymmetric deep “saddle” on both sides of the protein, saddle one (P11 to A129) and saddle two (L143 to A258), that may serve to bind ligands. NMR chemical shift perturbation experiments show that neutral red binds to Rv0577, further cementing the role of Rv0577 in the neutral red staining of virulent strains of M. tuberculosis. Similar experiments show that adenosine also bind to Rv0577, although less tightly, with estimated dissociation constants of 4.1 ± 0.3 mM for saddle one and > 1 M for saddle two. Heteronuclear steady-state {1H}-15N NOE, T1, and T2 values were generally uniform through-out the sequence with only a few modest pockets of differences suggestive of slightly different motion in loops between -strands in saddle 1. Circular dichroism spectroscopy characterization of the thermal stability of Rv0577 indicated irreversible unfolding upon heating with an estimated

Protoplanetary disks studied with 2-Dimensional imaging polarimetry

International Nuclear Information System (INIS)

Hajjar, R.; Bastien, P.

2000-01-01

Full text: This paper describes a method devised to determine density profiles of disks around Young Stellar Objects (YSOs), since this is crucial for the determination of the possible creation of planets based on theories of the proto solar nebula. It is based on the determination of the position of null polarization points in maps of YSOs as a function of wavelength. This information is interpreted in terms of variation in optical depth then converted to densities based on opacity tables for published grain models. This method has been used on a number of YSOs, namely HL Tau, the archetypal low mass T tauri protostar and showed a density profile compatible with previous models based on the spectral energy distribution of T Tauri stars. We will also explore the possibility of combining this method with millimeter and submillimeter data in order to better constraint grain models circumstellar matter distribution around YSOs

Overview of errors in the reference sequence and annotation of Mycobacterium tuberculosis H37Rv, and variation amongst its isolates

KAUST Repository

Kö ser, Claudio U.; Niemann, Stefan; Summers, David K.; Archer, John A.C.

2012-01-01

Since its publication in 1998, the genome sequence of the Mycobacterium tuberculosis H37Rv laboratory strain has acted as the cornerstone for the study of tuberculosis. In this review we address some of the practical aspects that have come to light

Clonal analysis of the T-cell response to in vivo expressed Mycobacterium tuberculosis protein Rv2034, using a CD154 expression based T-cell cloning method.

Directory of Open Access Journals (Sweden)

Susanna Commandeur

Full Text Available Tuberculosis (TB, caused by Mycobacterium tuberculosis (Mtb, remains a leading cause of death worldwide. A better understanding of the role of CD4+ and CD8+ T cells, which are both important to TB protection, is essential to unravel the mechanisms of protection and to identify the key antigens seen by these T cells. We have recently identified a set of in vivo expressed Mtb genes (IVE-TB which is expressed during in vivo pulmonary infection in mice, and shown that their encoded antigens are potently recognized by polyclonal T cells from tuberculin skin test-positive, in vitro ESAT-6/CFP10-responsive individuals. Here we have cloned T cells specific for one of these newly identified in vivo expressed Mtb (IVE-TB antigens, Rv2034. T cells were enriched based on the expression of CD154 (CD40L, which represents a new method for selecting antigen-specific (low frequency T cells independent of their specific function. An Rv2034-specific CD4+ T-cell clone expressed the Th1 markers T-bet, IFN-γ, TNF-α, IL-2 and the cytotoxicity related markers granzyme B and CD107a as measured by flow cytometry. The clone specifically recognized Rv2034 protein, Rv2034 peptide p81-100 and Mtb lysate. Remarkably, while the recognition of the dominant p81-100 epitope was HLA-DR restricted, the T-cell clone also recognized a neighboring epitope (p88-107 in an HLA-DR- as well as HLA-DQ1-restricted fashion. Importantly, the T-cell clone was able to inhibit Mtb outgrowth from infected monocytes significantly. The characterization of the polyfunctional and Mtb inhibitory T-cell response to IVE-TB Rv2034 at the clonal level provides detailed further insights into the potential of IVE-TB antigens as new vaccine candidate antigens in TB. Our new approach allowed the identification of T-cell subsets that likely play a significant role in controlling Mtb infection, and can be applied to the analysis of T-cell responses in patient populations.

Piecewise spectrally band-pass for compressive coded aperture spectral imaging

International Nuclear Information System (INIS)

Qian Lu-Lu; Lü Qun-Bo; Huang Min; Xiang Li-Bin

2015-01-01

Coded aperture snapshot spectral imaging (CASSI) has been discussed in recent years. It has the remarkable advantages of high optical throughput, snapshot imaging, etc. The entire spatial-spectral data-cube can be reconstructed with just a single two-dimensional (2D) compressive sensing measurement. On the other hand, for less spectrally sparse scenes, the insufficiency of sparse sampling and aliasing in spatial-spectral images reduce the accuracy of reconstructed three-dimensional (3D) spectral cube. To solve this problem, this paper extends the improved CASSI. A band-pass filter array is mounted on the coded mask, and then the first image plane is divided into some continuous spectral sub-band areas. The entire 3D spectral cube could be captured by the relative movement between the object and the instrument. The principle analysis and imaging simulation are presented. Compared with peak signal-to-noise ratio (PSNR) and the information entropy of the reconstructed images at different numbers of spectral sub-band areas, the reconstructed 3D spectral cube reveals an observable improvement in the reconstruction fidelity, with an increase in the number of the sub-bands and a simultaneous decrease in the number of spectral channels of each sub-band. (paper)

2002 EM1002 and EM120 Multibeam Sonar Data from Cruise R/V Kilo Moana KM-02-06 - Northwestern Hawaiian Islands

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — EM1002 and EM120 multibeam Data were collected in October/November 2002 aboard R/V Kilo Moana between Kauai Island and Lisianski Island in the Northwestern Hawaiian...

CHANDRA AND XMM-NEWTON X-RAY OBSERVATIONS OF THE HYPERACTIVE T TAURI STAR RY TAU

Energy Technology Data Exchange (ETDEWEB)

Skinner, Stephen L. [Center for Astrophysics and Space Astronomy (CASA), Univ. of Colorado, Boulder, CO 80309-0389 (United States); Audard, Marc [Dept. of Astronomy, University of Geneva, Ch. d’Ecogia 16, CH-1290 Versoix (Switzerland); Güdel, Manuel, E-mail: stephen.skinner@colorado.edu, E-mail: marc.audard@unige.ch, E-mail: manuel.guedel@univie.ac.at [Dept. of Astrophysics, Univ. of Vienna, Türkenschanzstr. 17, A-1180 Vienna (Austria)

2016-07-20

We present results of pointed X-ray observations of the accreting jet-driving T Tauri star RY Tau using Chandra and XMM-Newton . We obtained high-resolution grating spectra and excellent-quality CCD spectra and light curves with the objective of identifying the physical mechanisms underlying RY Tau’s bright X-ray emission. Grating spectra reveal numerous emission lines spanning a broad range of temperature superimposed on a hot continuum. The X-ray emission measure distribution is dominated by very hot plasma at T {sub hot} ∼ 50 MK, but higher temperatures were present during flares. A weaker cool plasma component is also present as revealed by low-temperature lines such as O viii. X-ray light curves show complex variability consisting of short-duration (∼hours) superhot flares accompanied by fluorescent Fe emission at 6.4 keV superimposed on a slowly varying (∼one day) component that may be tied to stellar rotation. The hot flaring component is undoubtedly of magnetic (e.g., coronal) origin. Soft- and hard-band light curves undergo similar slow variability implying that at least some of the cool plasma shares a common magnetic origin with the hot plasma. Any contribution to the X-ray emission from cool shocked plasma is small compared to the dominant hot component but production of individual low-temperature lines such as O viii in an accretion shock is not ruled out.

ULTRAVIOLET RAMAN SPECTRAL SIGNATURE ACQUISITION: UV RAMAN SPECTRAL FINGERPRINTS.

Energy Technology Data Exchange (ETDEWEB)

SEDLACEK,III, A.J.FINFROCK,C.

2002-09-01

As a member of the science-support part of the ITT-lead LISA development program, BNL is tasked with the acquisition of UV Raman spectral fingerprints and associated scattering cross-sections for those chemicals-of-interest to the program's sponsor. In support of this role, the present report contains the first installment of UV Raman spectral fingerprint data on the initial subset of chemicals. Because of the unique nature associated with the acquisition of spectral fingerprints for use in spectral pattern matching algorithms (i.e., CLS, PLS, ANN) great care has been undertaken to maximize the signal-to-noise and to minimize unnecessary spectral subtractions, in an effort to provide the highest quality spectral fingerprints. This report is divided into 4 sections. The first is an Experimental section that outlines how the Raman spectra are performed. This is then followed by a section on Sample Handling. Following this, the spectral fingerprints are presented in the Results section where the data reduction process is outlined. Finally, a Photographs section is included.

Efficacy and safety of a pentavalent live human-bovine reassortant rotavirus vaccine (RV5) in healthy Chinese infants: A randomized, double-blind, placebo-controlled trial.

Science.gov (United States)

Mo, Zhaojun; Mo, Yi; Li, Mingqiang; Tao, Junhui; Yang, Xu; Kong, Jilian; Wei, Dingkai; Fu, Botao; Liao, Xueyan; Chu, Jianli; Qiu, Yuanzheng; Hille, Darcy A; Nelson, Micki; Kaplan, Susan S

2017-10-13

A randomized, double-blind, placebo-controlled multicenter trial was conducted in healthy Chinese infants to assess the efficacy and safety of a pentavalent live human-bovine reassortant rotavirus vaccine (RotaTeq™, RV5) against rotavirus gastroenteritis (RVGE). 4040 participants aged 6-12weeks were enrolled and randomly assigned to either 3 oral doses of RV5 (n=2020) or placebo (n=2020), administered ∼4weeks apart. The participants also received OPV and DTaP in a concomitant or staggered fashion. The primary objective was to evaluate vaccine efficacy (VE) against naturally-occurring RVGE at least 14days following the third dose. Key secondary objectives included: VE against naturally-occurring severe RVGE and VE against severe and any-severity RVGE caused by rotavirus serotypes contained in the vaccine, occurring at least 14days after the third dose. All adverse events (AEs) were collected for 30days following each dose. Serious AEs (SAEs) and intussusception cases were collected during the entire study. (ClinicalTrials.gov registry: NCT02062385). VE against RVGE of any-severity caused by any serotype was 69.3% (95% CI: 54.5, 79.7). The secondary efficacy analysis showed an efficacy of: 78.9% (95% CI: 59.1, 90.1) against severe RVGE caused by any serotype; 69.9% (95% CI: 55.2, 80.3) and 78.9% (95% CI: 59.1, 90.1) against any-severity and severe RVGE caused by serotypes contained in the vaccine, respectively. Within 30days following any vaccination, 53.5% (1079/2015) and 53.3% (1077/2019) of participants reported at least one AE, and 5.8% (116/2015) and 5.7% (116/2019) reported SAEs in the vaccine and placebo groups, respectively. No SAEs were considered vaccine-related in recipients of RV5. Two intussusception cases were reported in recipients of RV5 who recovered after receiving treatment. Neither was considered vaccine-related. In Chinese infants, RV5 was efficacious against any-severity and severe RVGE caused by any serotype and generally well

The CARMENES search for exoplanets around M dwarfs. High-resolution optical and near-infrared spectroscopy of 324 survey stars

Science.gov (United States)

Reiners, A.; Zechmeister, M.; Caballero, J. A.; Ribas, I.; Morales, J. C.; Jeffers, S. V.; Schöfer, P.; Tal-Or, L.; Quirrenbach, A.; Amado, P. J.; Kaminski, A.; Seifert, W.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Ammler-von Eiff, M.; Antona, R.; Anglada-Escudé, G.; Anwand-Heerwart, H.; Arroyo-Torres, B.; Azzaro, M.; Baroch, D.; Barrado, D.; Bauer, F. F.; Becerril, S.; Béjar, V. J. S.; Benítez, D.; Berdinas˜, Z. M.; Bergond, G.; Blümcke, M.; Brinkmöller, M.; del Burgo, C.; Cano, J.; Cárdenas Vázquez, M. C.; Casal, E.; Cifuentes, C.; Claret, A.; Colomé, J.; Cortés-Contreras, M.; Czesla, S.; Díez-Alonso, E.; Dreizler, S.; Feiz, C.; Fernández, M.; Ferro, I. M.; Fuhrmeister, B.; Galadí-Enríquez, D.; Garcia-Piquer, A.; García Vargas, M. L.; Gesa, L.; Galera, V. Gómez; González Hernández, J. I.; González-Peinado, R.; Grözinger, U.; Grohnert, S.; Guàrdia, J.; Guenther, E. W.; Guijarro, A.; Guindos, E. de; Gutiérrez-Soto, J.; Hagen, H.-J.; Hatzes, A. P.; Hauschildt, P. H.; Hedrosa, R. P.; Helmling, J.; Henning, Th.; Hermelo, I.; Hernández Arabí, R.; Hernández Castaño, L.; Hernández Hernando, F.; Herrero, E.; Huber, A.; Huke, P.; Johnson, E. N.; Juan, E. de; Kim, M.; Klein, R.; Klüter, J.; Klutsch, A.; Kürster, M.; Lafarga, M.; Lamert, A.; Lampón, M.; Lara, L. M.; Laun, W.; Lemke, U.; Lenzen, R.; Launhardt, R.; López del Fresno, M.; López-González, J.; López-Puertas, M.; López Salas, J. F.; López-Santiago, J.; Luque, R.; Magán Madinabeitia, H.; Mall, U.; Mancini, L.; Mandel, H.; Marfil, E.; Marín Molina, J. A.; Maroto Fernández, D.; Martín, E. L.; Martín-Ruiz, S.; Marvin, C. J.; Mathar, R. J.; Mirabet, E.; Montes, D.; Moreno-Raya, M. E.; Moya, A.; Mundt, R.; Nagel, E.; Naranjo, V.; Nortmann, L.; Nowak, G.; Ofir, A.; Oreiro, R.; Pallé, E.; Panduro, J.; Pascual, J.; Passegger, V. M.; Pavlov, A.; Pedraz, S.; Pérez-Calpena, A.; Medialdea, D. Pérez; Perger, M.; Perryman, M. A. C.; Pluto, M.; Rabaza, O.; Ramón, A.; Rebolo, R.; Redondo, P.; Reffert, S.; Reinhart, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodríguez, E.; Rodríguez-López, C.; Rodríguez Trinidad, A.; Rohloff, R.-R.; Rosich, A.; Sadegi, S.; Sánchez-Blanco, E.; Sánchez Carrasco, M. A.; Sánchez-López, A.; Sanz-Forcada, J.; Sarkis, P.; Sarmiento, L. F.; Schäfer, S.; Schmitt, J. H. M. M.; Schiller, J.; Schweitzer, A.; Solano, E.; Stahl, O.; Strachan, J. B. P.; Stürmer, J.; Suárez, J. C.; Tabernero, H. M.; Tala, M.; Trifonov, T.; Tulloch, S. M.; Ulbrich, R. G.; Veredas, G.; Vico Linares, J. I.; Vilardell, F.; Wagner, K.; Winkler, J.; Wolthoff, V.; Xu, W.; Yan, F.; Zapatero Osorio, M. R.

2018-04-01

The CARMENES radial velocity (RV) survey is observing 324 M dwarfs to search for any orbiting planets. In this paper, we present the survey sample by publishing one CARMENES spectrum for each M dwarf. These spectra cover the wavelength range 520-1710 nm at a resolution of at least R >80 000, and we measure its RV, Hα emission, and projected rotation velocity. We present an atlas of high-resolution M-dwarf spectra and compare the spectra to atmospheric models. To quantify the RV precision that can be achieved in low-mass stars over the CARMENES wavelength range, we analyze our empirical information on the RV precision from more than 6500 observations. We compare our high-resolution M-dwarf spectra to atmospheric models where we determine the spectroscopic RV information content, Q, and signal-to-noise ratio. We find that for all M-type dwarfs, the highest RV precision can be reached in the wavelength range 700-900 nm. Observations at longer wavelengths are equally precise only at the very latest spectral types (M8 and M9). We demonstrate that in this spectroscopic range, the large amount of absorption features compensates for the intrinsic faintness of an M7 star. To reach an RV precision of 1 m s-1 in very low mass M dwarfs at longer wavelengths likely requires the use of a 10 m class telescope. For spectral types M6 and earlier, the combination of a red visual and a near-infrared spectrograph is ideal to search for low-mass planets and to distinguish between planets and stellar variability. At a 4 m class telescope, an instrument like CARMENES has the potential to push the RV precision well below the typical jitter level of 3-4 m s-1.

Construction Progress and Science Planning for the New Research Vessel R/V Sikuliaq

Science.gov (United States)

Whitledge, T. E.

2011-12-01

The research vessel R/V Sikuliaq (pronounced [see-KOO-lee-auk]) is currently being constructed on behalf of the NSF to support future scientific studies in high latitude waters. The 261 foot global class vessel will be capable of breaking 2.5 foot thick ice at 2 knots with an endurance of 45 days at sea and cruising at 11 knots. The R/V Sikuliaq will have a beam of 52 feet and a draft of 18.9 feet that will carry 26 scientists and a crew of 20. Berthing accommodations are a combination of single/double rooms with one stateroom and the common areas of the vessel are designed for ADA access and accommodations. The total laboratory space (main, analytical, electronics, wet, upper, and Baltic room will be 2100 square feet. The 4360 square foot working deck that is approximately 70 feet in length will accommodate 2-4 vans and multiple science operations. The vessel design strives to have the lowest possible environmental impact, including a low underwater-radiated noise signature. The science systems are prescribed to be state-of-the-art for bottom mapping, over-the-side "hands free" gear handling, broad band communications and scientific walk-in freezer and environmental chamber. More details and photos of the construction progress are available on the website at www.sfos.uaf.edu/arrv. The tentative shipyard schedule has a launch date of June 2012 and delivery to the University of Alaska Fairbanks in June 2013. Scientific operations following trials and testing is planned to start in January 2014. A Sikuliaq science planning workshop has been arranged for 18-19 February 2012 in Salt Lake City, UT just prior to the 2012 Ocean Sciences meeting. Interested participants should contact Terry Whitledge (terry@ims.uaf.edu).

Hydrodynamic ejection of bipolar flows from objects undergoing disk accretion: T Tauri stars, massive pre-main-sequence objects, and cataclysmic variables

International Nuclear Information System (INIS)

Torbett, M.V.

1984-01-01

A general mechanism is presented for generating pressure-driven winds that are intrinsically bipolar from objects undergoing disk accretion. The energy librated in a boundary layer shock as the disk matter impacts the central object is shown to be sufficient to eject a fraction βapprox.10 -2 to 10 -3 of the accreted mass. These winds are driven by a mechanism that accelerates the flow perpendicular to the plane of the disk and can therefore account for the bipolar geometry of the mass loss observed near young stars. The mass loss contained in these winds is comparable to that inferred for young stars. Thus, disk accretion-driven winds may constitute the T Tauri phase of stellar evolution. This mechanism is generally applicable, and thus massive pre-main-sequence objects as well as cataclysmic variables at times of enhanced accretion are predicted to eject bipolar outflows as well. Unmagnetized accreting neutron stas are also expected to eject bipolar flows. Since this mechanism requires stellar surfaces, however, it will not operate in disk accretion onto black holes

Rotation and kinematics of the premain-sequence stars in Taurus-Auriga with Ca II emission

Science.gov (United States)

Hartmann, Lee W.; Soderblom, David R.; Stauffer, John R.

1987-01-01

Radial velocities and v sin i values for the stars in the Taurus-Auriga region that were found to have strong Ca II H and K emission by Herbig, Vrba, and Rydgren 'HVR', (1986) are reported. Most of the velocities are determined to better than 2 km/s precision. The kinematic properties of the Ca II emission stars with strong Li are found to be indistinguishable from conventional T Tauris in Taurus-Auriga, contrary to HVR. These Li-rich stars also rotate like T Tauris. Most of the stars that lack Li are probable or possible members of the Hyades, in the foreground, and are among the brightest and most active stars in that cluster for their spectral types. It is suggested following Jones and Herbig (1979), that the apparent absence of low-mass stars older than 10 Myr in Taurus-Auriga is real, and is due to the finite lifetime of the cloud.

Rotation and kinematics of the premain-sequence stars in Taurus-Auriga with CA II emission

Science.gov (United States)

Hartmann, Lee W.; Soderblom, David R.; Stauffer, John R.

1987-04-01

The authors report radial velocities and v sin i values for the stars in the Taurus-Auriga region that were found to have strong Ca II H and K emission by Herbig, Vrba, and Rydgren (HVR). Most of the velocities are determined to better than 2 km s-1 precision. The authors find the kinematic properties of the Ca II emission stars with strong Li to be indistinguishable from conventional T Tauris in Taurus-Auriga, contrary to HVR. These Li-rich stars also rotate like T Tauris. Most of the stars that lack Li are probable or possible members of the Hyades, in the foreground, and are among the brightest and most active stars in that cluster for their spectral types. The authors suggest, following Jones and Herbig, that the apparent absence of low-mass stars older than 10 Myr in Taurus-Auriga is real, and is due to the finite lifetime of the cloud.

Conservation in gene encoding Mycobacterium tuberculosis antigen Rv2660 and a high predicted population coverage of H56 multistage vaccine in South Africa.

Science.gov (United States)

Perez-Martinez, Angy P; Ong, Edison; Zhang, Lixin; Marrs, Carl F; He, Yongqun; Yang, Zhenhua

2017-11-01

H56/AERAS-456+IC31 (H56), composed of two early secretion proteins, Ag85B and ESAT-6, and a latency associated protein, Rv2660, and the IC31 Intercell adjuvant, is a new fusion subunit vaccine candidate designed to induce immunity against both new infection and reactivation of latent tuberculosis infection. Efficacy of subunit vaccines may be affected by the diversity of vaccine antigens among clinical strains and the extent of recognition by the diverse HLA molecules in the recipient population. Although a previous study showed the conservative nature of Ag85B- and ESAT-6-encoding genes, genetic diversity of Rv2660c that encodes RV2660 is largely unknown. The population coverage of H56 as a whole yet remains to be assessed. The present study was conducted to address these important knowledge gaps. DNA sequence analysis of Rv2660c found no variation among 83 of the 84 investigated clinical strains belonging to four genetic lineages. H56 was predicted to have as high as 99.6% population coverage in the South Africa population using the Immune Epitope Database (IEDB) Population Coverage Tool. Further comparison of H56 population coverage between South African Blacks and Caucasians based on the phenotypic frequencies of binding MHC Class I and Class II supertype alleles found that all of the nine MHC-I and six of eight MHC-II human leukocyte antigen (HLA) supertype alleles analyzed were significantly differentially expressed between the two subpopulations. This finding suggests the presence of race-specific functional binding motifs of MHC-I and MHC-II HLA alleles, which, in turn, highlights the importance of including diverse populations in vaccine clinical evaluation. In conclusion, H56 vaccine is predicted to have a promising population coverage in South Africa; this study demonstrates the utility of integrating comparative genomics and bioinformatics in bridging animal and clinical studies of novel TB vaccines. Copyright © 2017 Elsevier B.V. All rights reserved.

Spectral evolution of GRBs with negative spectral lag using Fermi GBM observations

Science.gov (United States)

Chakrabarti, Arundhati; Chaudhury, Kishor; Sarkar, Samir K.; Bhadra, Arunava

2018-06-01

The positive spectral lag of Gamma Ray Bursts (GRBs) is often explained in terms of hard-to-soft spectral evolution of GRB pulses. While positive lags of GRBs is very common, there are few GRB pulses that exhibits negative spectral lags. In the present work we examine whether negative lags of GRBs also can be interpreted in terms of spectral evolution of GRB pulses or not. Using Fermi-GBM data, we identify two GRBs, GRB 090426C and GRB 150213A, with clean pulses that exhibit negative spectral lag. An indication of soft to hard transition has been noticed for the negative spectral lag events from the spectral evolution study. The implication of the present findings on the models of GRB spectral lags are discussed.

Underway pCO2 Measurements in Surface Waters and the Atmosphere During the R/V Nathaniel B. Palmer 2016 Expeditions (NCEI Accession 0166630)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0166630 includes Surface underway data collected from R/V Nathaniel B. Palmer in the South Pacific Ocean, South Atlantic Ocean, Southern Oceans from...

Underway pCO2 Measurements in Surface Waters and the Atmosphere During the R/V Laurence M. Gould 2016 Expeditions (NCEI Accession 0166525)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0166525 includes Surface underway data collected from R/V Laurence M. Gould in the South Atlantic Ocean, South Pacific Ocean and Southern Oceans from...

From spectral holeburning memory to spatial-spectral microwave signal processing

International Nuclear Information System (INIS)

Babbitt, Wm Randall; Barber, Zeb W; Harrington, Calvin; Mohan, R Krishna; Sharpe, Tia; Bekker, Scott H; Chase, Michael D; Merkel, Kristian D; Stiffler, Colton R; Traxinger, Aaron S; Woidtke, Alex J

2014-01-01

Many storage and processing systems based on spectral holeburning have been proposed that access the broad bandwidth and high dynamic range of spatial-spectral materials, but only recently have practical systems been developed that exceed the performance and functional capabilities of electronic devices. This paper reviews the history of the proposed applications of spectral holeburning and spatial-spectral materials, from frequency domain optical memory to microwave photonic signal processing systems. The recent results of a 20 GHz bandwidth high performance spectrum monitoring system with the additional capability of broadband direction finding demonstrates the potential for spatial-spectral systems to be the practical choice for solving demanding signal processing problems in the near future. (paper)

SigG Does Not Control Gene Expression in Response to DNA Damage in Mycobacterium tuberculosis H37Rv ▿ §

OpenAIRE

Smollett, Katherine L.; Dawson, Lisa F.; Davis, Elaine O.

2010-01-01

Expression of the Mycobacterium tuberculosis sigG sigma factor was induced by a variety of DNA-damaging agents, but inactivation of sigG did not affect induction of gene expression or bacterial survival under these conditions. Therefore, SigG does not control the DNA repair response of M. tuberculosis H37Rv.

Theoretical study of a novel refrigeration compressor - Part II: Performance of a rotating discharge valve in the revolving vane (RV) compressor

Energy Technology Data Exchange (ETDEWEB)

Teh, Y.L.; Ooi, K.T. [Thermal and Fluids Engineering Division, School of Mechanical and Aerospace Engineering, Nanyang Technological University, 50 Nanyang Avenue, S639798 (Singapore); Djamari, D. Wibowo [Engineering Mechanics Division, School of Mechanical and Aerospace Engineering, Nanyang Technological University, 50 Nanyang Avenue, S639798 (Singapore)

2009-08-15

A new refrigeration compressor, named 'Revolving Vane (RV) compressor', has been introduced in Part I of this paper series. For a first time in refrigeration compressors, a rotating discharge valve is employed in the RV compressor mainly due to the rotation of the entire cylinder. This paper presents a theoretical investigation on the dynamic behavior of a reed-type discharge valve undergoing rotatory motion, with the primary objective of elucidating the applicability of such valves in refrigeration compressors. Under the application of the Euler-Bernoulli beam theory, a mathematical model of the rotating valve is formulated and the transient response of the valve under centrifugal loads in addition to pressure forces is analyzed. Results have shown that under careful design considerations, the performance as well as the reliability of the rotating discharge valve can be enhanced as compared to a non-rotating valve that has been used in all refrigeration compressors currently. (author)

The period analysis of V418 AQL, SU BOO, RV CVn, CR CAS, GV CYG, V432 PER, and BD+42 2782

International Nuclear Information System (INIS)

Zasche, P.; Wolf, M.; Kučáková, H.; Uhlař, R.

2014-01-01

The minimum timings of eclipsing binaries V418 Aql, SU Boo, RV CVn, CR Cas, GV Cyg, V432 Per, and BD+42 2782 were collected and analyzed. Their long-term behavior was studied via period analysis, revealing a periodic term in eclipse times. We derived 576 new times of minimum. Hence, to describe the periodic variation, a third-body hypothesis was proposed and the resulting orbital periods are as follows: 70, 7.4, 53, 37, 27, 53, and 18 yr, respectively. For the system V432 Per an additional 9.5 yr variation was also found. The predicted minimum masses of these distant bodies were calculated and their detectability discussed. The light curves of SU Boo and RV CVn were analyzed using the PHOEBE program, resulting in physical parameters of the components. New variable stars in the field of V418 Aql were discovered.

Spectral Imaging by Upconversion

DEFF Research Database (Denmark)

Dam, Jeppe Seidelin; Pedersen, Christian; Tidemand-Lichtenberg, Peter

2011-01-01

We present a method to obtain spectrally resolved images using upconversion. By this method an image is spectrally shifted from one spectral region to another wavelength. Since the process is spectrally sensitive it allows for a tailored spectral response. We believe this will allow standard...... silicon based cameras designed for visible/near infrared radiation to be used for spectral images in the mid infrared. This can lead to much lower costs for such imaging devices, and a better performance....

Implantación de un Controlador para la Cinemática Inversa del Brazo Robot Mitsubishi RV-2AJ a través de una Tarjeta ARM y MatLab

OpenAIRE

Cajamarca Peñafiel, Jorge Andres; Portilla Vargas, Alexis David

2016-01-01

The project involves the design and construction of a controller for handling the inverse and forward kinematics of the robot Mitsubishi RV-2AJ arm, it is located in the laboratories of the Salesian University in order to create a direct communication through an external card ARM and MatLab software. This driver allows the user to manipulate the robot arm Mitsubishi RV-2AJ in two categories, by joints and coordinates, with a compact hardware and easy to use interface, the autonomy is given...

Robustness of the healthcare utilization results from the Rotavirus Efficacy and Safety Trial (REST evaluating the human-bovine (WC3 reassortant pentavalent rotavirus vaccine (RV5

Directory of Open Access Journals (Sweden)

Van Damme Pierre

2010-06-01

Full Text Available Abstract Background The Rotavirus Efficacy and Safety Trial was a placebo-controlled Phase III study that evaluated the safety and efficacy of a three-dose pentavalent rotavirus vaccine (RV5 including its effect on healthcare utilization for rotavirus gastroenteritis (RVGE. The per-protocol (PP analyses, which counted events occurring 14 days after dose 3 among infants without protocol violations, have already been published. This paper evaluates the consistency of the healthcare utilization results based on the modified intention to treat (MITT analyses with the PP analyses. The MITT analyses include all infants receiving at least one dose of vaccine or placebo and follow-up begins after dose 1. The paper also explores the consistency of the results for different subgroups of the study population with different types of surveillance. Methods Data on healthcare utilization for acute gastroenteritis were collected via telephone interviews after administration of the first dose. Parents were either contacted every 6 weeks or every 2 weeks depending on the substudy in which they were enrolled. Those contacted every 2 weeks were also asked to complete symptom diaries. Poisson regression was used to evaluate the effect of RV5 on the rates of RVGE-associated healthcare encounters in all of the analyses. Results In the first 2 years after vaccination, RV5 reduced the combined rate of hospitalizations and emergency department (ED visits 88.9% (95% CI: 84.9, 91.9 for all RVGE regardless of serotype in the MITT analysis compared with a 94.5% (95% CI: 91.2, 96.6 reduction based on the G1-G4 PP analysis. By type of surveillance, the rate reductions for the G1-G4 PP analysis were 91.0% (95% CI: 81.7, 95.5 and 95.9% (95% CI: 92.2, 97.8 among parents contacted every 2 weeks (number evaluable = 4,451 and every 6 weeks (number evaluable = 52,683 respectively. Conclusions Our analyses demonstrated that the effect of RV5 on reducing the rate of hospitalizations

Examination of Spectral Transformations on Spectral Mixture Analysis

Science.gov (United States)

Deng, Y.; Wu, C.

2018-04-01

While many spectral transformation techniques have been applied on spectral mixture analysis (SMA), few study examined their necessity and applicability. This paper focused on exploring the difference between spectrally transformed schemes and untransformed scheme to find out which transformed scheme performed better in SMA. In particular, nine spectrally transformed schemes as well as untransformed scheme were examined in two study areas. Each transformed scheme was tested 100 times using different endmember classes' spectra under the endmember model of vegetation- high albedo impervious surface area-low albedo impervious surface area-soil (V-ISAh-ISAl-S). Performance of each scheme was assessed based on mean absolute error (MAE). Statistical analysis technique, Paired-Samples T test, was applied to test the significance of mean MAEs' difference between transformed and untransformed schemes. Results demonstrated that only NSMA could exceed the untransformed scheme in all study areas. Some transformed schemes showed unstable performance since they outperformed the untransformed scheme in one area but weakened the SMA result in another region.

Rotavirus specific maternal antibodies and immune response to RV3-BB neonatal rotavirus vaccine in New Zealand

OpenAIRE

Chen, Mee-Yew; Kirkwood, Carl D.; Bines, Julie; Cowley, Daniel; Pavlic, Daniel; Lee, Katherine J.; Orsini, Francesca; Watts, Emma; Barnes, Graeme; Danchin, Margaret

2017-01-01

Background: Maternal antibodies, acquired passively via placenta and/or breast milk, may contribute to the reduced efficacy of oral rotavirus vaccines observed in children in developing countries. This study aimed to investigate the effect of rotavirus specific maternal antibodies on the serum IgA response or stool excretion of vaccine virus after any dose of an oral rotavirus vaccine, RV3-BB, in parallel to a Phase IIa clinical trial conducted at Dunedin Hospital, New Zealand. At the time o...

Perspective on sequence evolution of microsatellite locus (CCGn in Rv0050 gene from Mycobacterium tuberculosis

Directory of Open Access Journals (Sweden)

Jin Ruiliang

2011-08-01

Full Text Available Abstract Background The mycobacterial genome is inclined to polymerase slippage and a high mutation rate in microsatellite regions due to high GC content and absence of a mismatch repair system. However, the exact molecular mechanisms underlying microsatellite variation have not been fully elucidated. Here, we investigated mutation events in the hyper-variable trinucleotide microsatellite locus MML0050 located in the Rv0050 gene of W-Beijing and non-W-Beijing Mycobacterium tuberculosis strains in order to gain insight into the genomic structure and activity of repeated regions. Results Size analysis indicated the presence of five alleles that differed in length by three base pairs. Moreover, nucleotide gains occurred more frequently than loses in this trinucleotide microsatellite. Mutation frequency was not completely related with the total length, though the relative frequency in the longest allele was remarkably higher than that in the shortest. Sequence analysis was able to detect seven alleles and revealed that point mutations enhanced the level of locus variation. Introduction of an interruptive motif correlated with the total allele length and genetic lineage, rather than the length of the longest stretch of perfect repeats. Finally, the level of locus variation was drastically different between the two genetic lineages. Conclusion The Rv0050 locus encodes the bifunctional penicillin-binding protein ponA1 and is essential to mycobacterial survival. Our investigations of this particularly dynamic genomic region provide insights into the overall mode of microsatellite evolution. Specifically, replication slippage was implicated in the mutational process of this microsatellite and a sequence-based genetic analysis was necessary to determine that point mutation events acted to maintain microsatellite size integrity while providing genomic diversity.

Conductivity, temperature, depth, water quality and pigment data from R/V Bellows cruise BE-1311, 2012-12-12 to 2012-12-14 (NCEI Accession 0159411)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains conductivity, temperature, and depth data collected during R/V Bellows cruise BE-1311 of the offshore shelf of the Florida Panhandle Bight at...

Spectral image reconstruction using an edge preserving spatio-spectral Wiener estimation.

Science.gov (United States)

Urban, Philipp; Rosen, Mitchell R; Berns, Roy S

2009-08-01

Reconstruction of spectral images from camera responses is investigated using an edge preserving spatio-spectral Wiener estimation. A Wiener denoising filter and a spectral reconstruction Wiener filter are combined into a single spatio-spectral filter using local propagation of the noise covariance matrix. To preserve edges the local mean and covariance matrix of camera responses is estimated by bilateral weighting of neighboring pixels. We derive the edge-preserving spatio-spectral Wiener estimation by means of Bayesian inference and show that it fades into the standard Wiener reflectance estimation shifted by a constant reflectance in case of vanishing noise. Simulation experiments conducted on a six-channel camera system and on multispectral test images show the performance of the filter, especially for edge regions. A test implementation of the method is provided as a MATLAB script at the first author's website.

Euroopa Sotsiaalfondi vahendid Eesti noortekeskustes - kasutus, tulemused ja mõju noortekeskustele ning ühiskonnale / Heidi Paabort ; kommenteerinud Kerli Kõiv, Tiina Sinijärv, Aire Pruus

Index Scriptorium Estoniae

Paabort, Heidi

2013-01-01

ESFi programmide tulemusel toimunud muutusi noorsootöös kommenteerivad Rõuge vallavalitsuse noorsootöö spetsialist Kerli Kõiv, Keila ANK ja Keila Noortekeskuse juhataja Tiina Sinijärv ja Nursi noorsootöös osaleja Aire Pruus

A catalog of pre-main-sequence emission-line stars with IRAS source associations

International Nuclear Information System (INIS)

Weintraub, D.A.

1990-01-01

To aid in finding premain-sequence (PMS) emission-line stars that might have dusty circumstellar environments, 361 PMS stars that are associated with 304 separate IRAS sources were identified. These stars include 200 classical T Tauri stars, 25 weak-lined (naked) T Tauri stars, 56 Herbig Ae/Be stars, six FU Orionis stars, and two SU Aurigae stars. All six of the FU Orionis stars surveyed by IRAS were detected. Of the PMS-IRAS Point Source Catalog (PSC) associations, 90 are new and are not noted in the PSC. The other 271 entries include 104 that are correctly identified in the PSC but have not yet appeared in the literature, 56 more that can be found in both the PSC and in the published and unpublished iterature, and 111 that are in the literature but not in the PSC. Spectral slope diagrams constructed from the 12-, 25-, and 60-micron flux densities reveal unique distributions for the different PMS subclasses; these diagrams may help identify the best candidate PMS stars for observations of circumstellar dust. 30 refs

Spectrally selective glazings

Energy Technology Data Exchange (ETDEWEB)

NONE

1998-08-01

Spectrally selective glazing is window glass that permits some portions of the solar spectrum to enter a building while blocking others. This high-performance glazing admits as much daylight as possible while preventing transmission of as much solar heat as possible. By controlling solar heat gains in summer, preventing loss of interior heat in winter, and allowing occupants to reduce electric lighting use by making maximum use of daylight, spectrally selective glazing significantly reduces building energy consumption and peak demand. Because new spectrally selective glazings can have a virtually clear appearance, they admit more daylight and permit much brighter, more open views to the outside while still providing the solar control of the dark, reflective energy-efficient glass of the past. This Federal Technology Alert provides detailed information and procedures for Federal energy managers to consider spectrally selective glazings. The principle of spectrally selective glazings is explained. Benefits related to energy efficiency and other architectural criteria are delineated. Guidelines are provided for appropriate application of spectrally selective glazing, and step-by-step instructions are given for estimating energy savings. Case studies are also presented to illustrate actual costs and energy savings. Current manufacturers, technology users, and references for further reading are included for users who have questions not fully addressed here.

Preparing for Science at Sea - a Chief Scientists Training Cruise on Board the RV Sikuliaq

Science.gov (United States)

Coakley, B.; Pockalny, R. A.

2017-12-01

As part of their education, marine geology and geophysics students spend time at sea, collecting, processing and interpreting data to earn their degrees. While this is a critical component of their preparation, it is an incomplete introduction to the process of doing science at sea. Most students are unfamiliar with the proposal process. Many students spend their time at sea performing assigned tasks without responsibility or participation in cruise planning and execution. In December 2016, we conducted a two-week-long, NSF-funded "Chief Scientist Training Cruise" aboard the R/V Sikuliaq designed to complete their introduction to seagoing science by giving the students the opportunity to plan and execute surveys based hypotheses they formulated. The educational process began with applicants responding to a request for proposals (RFP), which provided a framework for the scientific potential of the cruise. This process continued training through two days of workshops and presentations at the Hawai'i Institute of Geophysics. The students used existing data to define hypotheses, plan surveys, and collect/analyze data to test their hypothesis. The survey design was subject to the time constraints imposed by the ship schedule and the physical constraints imposed by the ship's equipment. The training and sea time made it possible to address all of steps of the scientific process, including proposal writing. Once underway, the combination of conducting the planned surveys and attending daily presentations helped familiarize the students with at-sea operations, the equipment on board the RV Sikuliaq, and the process of writing proposals to NSF for sea-going science. Questionnaires conducted prior to the cruise and in the final days before arriving in port document the success of this training program for developing the abilities and confidence in identifying significant scientific problems, preparing proposals to secure funding, and planning and directing ship surveys.

Adaptive Spectral Doppler Estimation

DEFF Research Database (Denmark)

Gran, Fredrik; Jakobsson, Andreas; Jensen, Jørgen Arendt

2009-01-01

. The methods can also provide better quality of the estimated power spectral density (PSD) of the blood signal. Adaptive spectral estimation techniques are known to pro- vide good spectral resolution and contrast even when the ob- servation window is very short. The 2 adaptive techniques are tested......In this paper, 2 adaptive spectral estimation techniques are analyzed for spectral Doppler ultrasound. The purpose is to minimize the observation window needed to estimate the spectrogram to provide a better temporal resolution and gain more flexibility when designing the data acquisition sequence...... and compared with the averaged periodogram (Welch’s method). The blood power spectral capon (BPC) method is based on a standard minimum variance technique adapted to account for both averaging over slow-time and depth. The blood amplitude and phase estimation technique (BAPES) is based on finding a set...

WATER TEMPERATURE, Depth, and SALINITY collected from RV Walton Smith in Gulf of Mexico from 2012-07-01 to 2012-08-01 (NCEI Accession 0156594)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — 59 CTD casts made from small boats launched by the RV Walton Smith in the northern Gulf of Mexico near DeSoto Canyon in July 2012 as part of the Grand Lagrangian...

Water Temperature, Conductivity, and others collected from RV Walton Smith in Gulf of Mexico from 2012-07-21 to 2012-08-01 (NCEI Accession 0156586)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains 43 CTD casts made from the RV Walton Smith in the northern Gulf of Mexico near DeSoto Canyon in July-August 2012 as part of the Grand...

Role of local absorption on the X-ray emission from MHD accretion shocks in classical T Tauri stars

Directory of Open Access Journals (Sweden)

Bonito

2014-01-01

Full Text Available Accretion processes onto classical T Tauri stars (CTTSs are believed to generate shocks at the stellar surface due to the impact of supersonic downflowing plasma. Although current models of accretion streams provide a plausible global picture of this process, several aspects are still unclear. For example, the observed X-ray luminosity in accretion shocks is, in general, well below the predicted value. A possible explanation discussed in the literature is in terms of significant absorption of the emission due to the thick surrounding medium. Here we consider a 2D MHD model describing an accretion stream propagating through the atmosphere of a CTTS and impacting onto its chromosphere. The model includes all the relevant physics, namely the gravity, the thermal conduction, and the radiative cooling, and a realistic description of the unperturbed stellar atmosphere (from the chromosphere to the corona. From the model results, we synthesize the X-ray emission emerging from the hot slab produced by the accretion shock, exploring different configurations and strengths of the stellar magnetic field. The synthesis includes the local absorption by the thick surrounding medium and the Doppler shift of lines due to the component of plasma velocity along the line-of-sight. We explore the effects of absorption on the emerging X-ray spectrum, considering different inclinations of the accretion stream with respect to the observer. Finally we compare our results with the observations.

Water Formation and Destruction by 'Super' X-ray Flares from a T-Tauri Star in a Protoplanetary Disk

Science.gov (United States)

Waggoner, Abygail R.; Cleeves, L. Ilsedore

2018-01-01

We present models of H2O chemistry is protoplanetary disks in the presence of 'super' X-ray flares emitted by a T-Tauri star. We examine the time-evolving chemistry of H2O at radial locations from 1 to 20 AU at various vertical heights from the mid-plane to the surface of the disk. We find the gas-phase H2O abundance can be enhanced in the surface (Z/R ≥ 0.3) by more than a factor of approximately 3 - 5 by strong flares, i.e., those that increase the ionization rate by a factor of 100. Dissociative recombination of H3O+ , H2O adsorption onto grain, and photolysis of H2O are found to be the three dominant processes leading to a change in H2O abundance. We find X-ray flares have predominantly short- term (days) effects on gaseous H2O abundance, but some regions show a long-term (for the duration of the test about 15 days) decrease in gaseous H2O due to adsorption onto grains, which results in an increase (up to 200%) in ice H2O in regions where ice H2O is 10-8 abundance no are response in the ice is observed.Thanks to the National Science Foundation for funding this research as a part of the Smithsonian Astrophysical Observatory Research Experience for Undergraduates (SAO REU).

A SPITZER IRS STUDY OF INFRARED VARIABILITY IN TRANSITIONAL AND PRE-TRANSITIONAL DISKS AROUND T TAURI STARS

International Nuclear Information System (INIS)

Espaillat, C.; Furlan, E.; D'Alessio, P.; Sargent, B.; Muzerolle, J.; Nagel, E.; Calvet, N.; Watson, Dan M.

2011-01-01

We present a Spitzer IRS study of variability in 14 T Tauri stars in the Taurus and Chamaeleon star-forming regions. The sample is composed of transitional and pre-transitional objects which contain holes and gaps in their disks. We detect variability between 5 and 38 μm in all but two of our objects on timescales of 2-3 years. Most of the variability observed can be classified as seesaw behavior, whereby the emission at shorter wavelengths varies inversely with the emission at longer wavelengths. For many of the objects we can reasonably reproduce the observed variability using irradiated disk models, particularly by changing the height of the inner disk wall by ∼20%. When the inner wall is taller, the emission at the shorter wavelengths is higher since the inner wall dominates the emission at 2-8 μm. The taller inner wall casts a larger shadow on the outer disk wall, leading to less emission at wavelengths beyond 20 μm where the outer wall dominates. We discuss how the possible presence of planets in these disks could lead to warps that cause changes in the height of the inner wall. We also find that crystalline silicates are common in the outer disks of our objects and that in the four disks in the sample with the most crystalline silicates, variability on timescales of 1 week is present. In addition to explaining the infrared variability described above, planets can create shocks and collisions which can crystallize the dust and lead to short timescale variability.

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions

DEFF Research Database (Denmark)

Kavvas, Erol S.; Seif, Yara; Yurkovich, James T.

2018-01-01

previous M. tuberculosis H37Rv genome-scale reconstructions. We functionally assess iEK1011 against previous models and show that the model increases correct gene essentiality predictions on two different experimental datasets by 6% (53% to 60%) and 18% (60% to 71%), respectively. We compared simulations...

Hydrostatic pressure, water temperature, and others collected from R/V Pelican in Gulf of Mexico from 2012-11-28 to 2012-12-20 (NCEI Accession 0156587)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data was collected during the GISR G03 cruise aboard R/V Pelican held from 28 November to 20 December 2012. This data set includes vertical profiles of...

CONDUCTIVITY, WATER TEMPERATURE, and others collected from R/V Weatherbird II in Gulf of Mexico from 2013-06-24 to 2013-06-30 (NCEI Accession 0156593)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset reports conductivity, temperature and depth data collected in the Northern Gulf of Mexico during the R/V Weatherbird II cruise WB-1318 from June 24-30th...

Spectral multitude and spectral dynamics reflect changing conjugation length in single molecules of oligophenylenevinylenes

KAUST Repository

Kobayashi, Hiroyuki; Tsuchiya, Kousuke; Ogino, Kenji; Vacha, Martin

2012-01-01

Single-molecule study of phenylenevinylene oligomers revealed distinct spectral forms due to different conjugation lengths which are determined by torsional defects. Large spectral jumps between different spectral forms were ascribed to torsional flips of a single phenylene ring. These spectral changes reflect the dynamic nature of electron delocalization in oligophenylenevinylenes and enable estimation of the phenylene torsional barriers. © 2012 The Owner Societies.

Two-color photographic photometry of variables in the globular cluster M28

International Nuclear Information System (INIS)

Wehlau, A.; Butterworth, S.

1990-01-01

Visual magnitudes have been measured for 20 variables on 32 plates of M28. These have been combined with previously published as well as newly determined blue magnitudes in order to obtain colors for the variables. Blue and visual light curves are presented for 15 of the the variables, including one W Virginis star V4, one RV Tauri star V17, one field Mira variable V7, nine cluster RR Lyrae stars, and three field RR Lyrae stars. It is shown that V14, previously thought to be a c type RR Lyrae star, is to the red of the instability strip. The visual light curve of V9 suggests that the star may be a member of a binary or a very close optical double. Possible evidence for differential reddening in the vicinity of M28 is presented. The bimodal distribution of the periods of the RR Lyrae stars in M28 may indicate a spread in metallicity among the RR Lyrae variables. 16 refs

[Review of digital ground object spectral library].

Science.gov (United States)

Zhou, Xiao-Hu; Zhou, Ding-Wu

2009-06-01

A higher spectral resolution is the main direction of developing remote sensing technology, and it is quite important to set up the digital ground object reflectance spectral database library, one of fundamental research fields in remote sensing application. Remote sensing application has been increasingly relying on ground object spectral characteristics, and quantitative analysis has been developed to a new stage. The present article summarized and systematically introduced the research status quo and development trend of digital ground object reflectance spectral libraries at home and in the world in recent years. Introducing the spectral libraries has been established, including desertification spectral database library, plants spectral database library, geological spectral database library, soil spectral database library, minerals spectral database library, cloud spectral database library, snow spectral database library, the atmosphere spectral database library, rocks spectral database library, water spectral database library, meteorites spectral database library, moon rock spectral database library, and man-made materials spectral database library, mixture spectral database library, volatile compounds spectral database library, and liquids spectral database library. In the process of establishing spectral database libraries, there have been some problems, such as the lack of uniform national spectral database standard and uniform standards for the ground object features as well as the comparability between different databases. In addition, data sharing mechanism can not be carried out, etc. This article also put forward some suggestions on those problems.

Safety and immunogenicity of RV3-BB human neonatal rotavirus vaccine administered at birth or in infancy: a randomised, double-blind, placebo-controlled trial.

Science.gov (United States)

Bines, Julie E; Danchin, Margaret; Jackson, Pamela; Handley, Amanda; Watts, Emma; Lee, Katherine J; West, Amanda; Cowley, Daniel; Chen, Mee-Yew; Barnes, Graeme L; Justice, Frances; Buttery, Jim P; Carlin, John B; Bishop, Ruth F; Taylor, Barry; Kirkwood, Carl D

2015-12-01

Despite the success of rotavirus vaccines, suboptimal vaccine efficacy in regions with a high burden of disease continues to present a challenge to worldwide implementation. A birth dose strategy with a vaccine developed from an asymptomatic neonatal rotavirus strain has the potential to address this challenge and provide protection from severe rotavirus disease from birth. This phase 2a randomised, double-blind, three-arm, placebo-controlled safety and immunogenicity trial was undertaken at a single centre in New Zealand between Jan 13, 2012, and April 17, 2014. Healthy, full-term (≥36 weeks gestation) babies, who weighed at least 2500 g, and were 0-5 days old at the time of randomisation were randomly assigned (1:1:1; computer-generated; telephone central allocation) according to a concealed block randomisation schedule to oral RV3-BB vaccine with the first dose given at 0-5 days after birth (neonatal schedule), to vaccine with the first dose given at about 8 weeks after birth (infant schedule), or to placebo. The primary endpoint was cumulative vaccine take (serum immune response or stool shedding of vaccine virus after any dose) after three doses. The immunogenicity analysis included all randomised participants with available outcome data. This trial is registered with the Australian New Zealand Clinical Trials Registry, ACTRN12611001212943. 95 eligible participants were randomised, of whom 89 were included in the primary analysis. A cumulative vaccine take was detected in 27 (90%) of 30 participants in the neonatal schedule group after three doses of RV3-BB vaccine compared with four (13%) of 32 participants in the placebo group (difference in proportions 0·78, 95% CI 0·55-0·88; pvaccine take after three doses compared with eight (25%) of 32 participants in the placebo group (difference in proportions 0·68, 0·44-0·81; pvaccine was not associated with an increased frequency of fever or gastrointestinal symptoms compared with placebo. RV3-BB vaccine was

SpectralNET – an application for spectral graph analysis and visualization

Directory of Open Access Journals (Sweden)

Schreiber Stuart L

2005-10-01

Full Text Available Abstract Background Graph theory provides a computational framework for modeling a variety of datasets including those emerging from genomics, proteomics, and chemical genetics. Networks of genes, proteins, small molecules, or other objects of study can be represented as graphs of nodes (vertices and interactions (edges that can carry different weights. SpectralNET is a flexible application for analyzing and visualizing these biological and chemical networks. Results Available both as a standalone .NET executable and as an ASP.NET web application, SpectralNET was designed specifically with the analysis of graph-theoretic metrics in mind, a computational task not easily accessible using currently available applications. Users can choose either to upload a network for analysis using a variety of input formats, or to have SpectralNET generate an idealized random network for comparison to a real-world dataset. Whichever graph-generation method is used, SpectralNET displays detailed information about each connected component of the graph, including graphs of degree distribution, clustering coefficient by degree, and average distance by degree. In addition, extensive information about the selected vertex is shown, including degree, clustering coefficient, various distance metrics, and the corresponding components of the adjacency, Laplacian, and normalized Laplacian eigenvectors. SpectralNET also displays several graph visualizations, including a linear dimensionality reduction for uploaded datasets (Principal Components Analysis and a non-linear dimensionality reduction that provides an elegant view of global graph structure (Laplacian eigenvectors. Conclusion SpectralNET provides an easily accessible means of analyzing graph-theoretic metrics for data modeling and dimensionality reduction. SpectralNET is publicly available as both a .NET application and an ASP.NET web application from http://chembank.broad.harvard.edu/resources/. Source code is

(LMRG): Microscope Resolution, Objective Quality, Spectral Accuracy and Spectral Un-mixing

Science.gov (United States)

Bayles, Carol J.; Cole, Richard W.; Eason, Brady; Girard, Anne-Marie; Jinadasa, Tushare; Martin, Karen; McNamara, George; Opansky, Cynthia; Schulz, Katherine; Thibault, Marc; Brown, Claire M.

2012-01-01

The second study by the LMRG focuses on measuring confocal laser scanning microscope (CLSM) resolution, objective lens quality, spectral imaging accuracy and spectral un-mixing. Affordable test samples for each aspect of the study were designed, prepared and sent to 116 labs from 23 countries across the globe. Detailed protocols were designed for the three tests and customized for most of the major confocal instruments being used by the study participants. One protocol developed for measuring resolution and objective quality was recently published in Nature Protocols (Cole, R. W., T. Jinadasa, et al. (2011). Nature Protocols 6(12): 1929–1941). The first study involved 3D imaging of sub-resolution fluorescent microspheres to determine the microscope point spread function. Results of the resolution studies as well as point spread function quality (i.e. objective lens quality) from 140 different objective lenses will be presented. The second study of spectral accuracy looked at the reflection of the laser excitation lines into the spectral detection in order to determine the accuracy of these systems to report back the accurate laser emission wavelengths. Results will be presented from 42 different spectral confocal systems. Finally, samples with double orange beads (orange core and orange coating) were imaged spectrally and the imaging software was used to un-mix fluorescence signals from the two orange dyes. Results from 26 different confocal systems will be summarized. Time will be left to discuss possibilities for the next LMRG study.

Characterizing CDOM Spectral Variability Across Diverse Regions and Spectral Ranges

Science.gov (United States)

Grunert, Brice K.; Mouw, Colleen B.; Ciochetto, Audrey B.

2018-01-01

Satellite remote sensing of colored dissolved organic matter (CDOM) has focused on CDOM absorption (aCDOM) at a reference wavelength, as its magnitude provides insight into the underwater light field and large-scale biogeochemical processes. CDOM spectral slope, SCDOM, has been treated as a constant or semiconstant parameter in satellite retrievals of aCDOM despite significant regional and temporal variabilities. SCDOM and other optical metrics provide insights into CDOM composition, processing, food web dynamics, and carbon cycling. To date, much of this work relies on fluorescence techniques or aCDOM in spectral ranges unavailable to current and planned satellite sensors (e.g., global variability in SCDOM and fit deviations in the aCDOM spectra using the recently proposed Gaussian decomposition method. From this, we investigate if global variability in retrieved SCDOM and Gaussian components is significant and regionally distinct. We iteratively decreased the spectral range considered and analyzed the number, location, and magnitude of fitted Gaussian components to understand if a reduced spectral range impacts information obtained within a common spectral window. We compared the fitted slope from the Gaussian decomposition method to absorption-based indices that indicate CDOM composition to determine the ability of satellite-derived slope to inform the analysis and modeling of large-scale biogeochemical processes. Finally, we present implications of the observed variability for remote sensing of CDOM characteristics via SCDOM.

Analysis of 45-years of Eclipse Timings of the Hyades (K2 V+ DA) Eclipsing Binary V471 Tauri

Science.gov (United States)

Marchioni, Lucas; Guinan, Edward; Engle, Scott

2018-01-01

V471 Tau is an important detached 0.521-day eclipsing binary composed of a K2 V and a hot DA white dwarf star. This system resides in the Hyades star cluster located approximately 153 Ly from us. V471 Tau is considered to be the end-product of common-envelope binary star evolution and is currently a pre-CV system. V471 Tau serves as a valuable astrophysical laboratory for studying stellar evolution, white dwarfs, stellar magnetic dynamos, and possible detection of low mass companions using the Light Travel Time (LTT) Effects. Since its discovery as an eclipsing binary in 1970, photometry has been carried out and many eclipse timings have been determined. We have performed an analysis of the available photometric data available on V471 Tauri. The binary system has been the subject of analyses regarding the orbital period. From this analysis several have postulated the existence of a third body in the form of a brown dwarf that is causing periodic variations in the system’s apparent period. In this study we combine ground based data with photometry secured recently from the Kepler K2 mission. After detrending and phasing the available data, we are able to compare the changing period of the eclipsing binary system against predictions on the existence of this third body. The results of the analysis will be presented. This research is sponsored by grants from NASA and NSF for which we are very grateful.

Label-free quantitative analysis of the casein kinase 2-responsive phosphoproteome of the marine minimal model species Ostreococcus tauri.

Science.gov (United States)

Le Bihan, Thierry; Hindle, Matthew; Martin, Sarah F; Barrios-Llerena, Martin E; Krahmer, Johanna; Kis, Katalin; Millar, Andrew J; van Ooijen, Gerben

2015-12-01

Casein kinase 2 (CK2) is a protein kinase that phosphorylates a plethora of cellular target proteins involved in processes including DNA repair, cell cycle control, and circadian timekeeping. CK2 is functionally conserved across eukaryotes, although the substrate proteins identified in a range of complex tissues are often different. The marine alga Ostreococcus tauri is a unicellular eukaryotic model organism ideally suited to efficiently study generic roles of CK2 in the cellular circadian clock. Overexpression of CK2 leads to a slow circadian rhythm, verifying functional conservation of CK2 in timekeeping. The proteome was analysed in wild-type and CK2-overexpressing algae at dawn and dusk, revealing that differential abundance of the global proteome across the day is largely unaffected by overexpression. However, CK2 activity contributed more strongly to timekeeping at dusk than at dawn. The phosphoproteome of a CK2 overexpression line and cells treated with CK2 inhibitor was therefore analysed and compared to control cells at dusk. We report an extensive catalogue of 447 unique CK2-responsive differential phosphopeptide motifs to inform future studies into CK2 activity in the circadian clock of more complex tissues. All MS data have been deposited in the ProteomeXchange with identifier PXD000975 (http://proteomecentral.proteomexchange.org/dataset/PXD000975). © 2015 The Authors. PROTEOMICS Published by Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Calibration of GafChromic XR-RV3 radiochromic film for skin dose measurement using standardized x-ray spectra and a commercial flatbed scanner

International Nuclear Information System (INIS)

McCabe, Bradley P.; Speidel, Michael A.; Pike, Tina L.; Van Lysel, Michael S.

2011-01-01

Purpose: In this study, newly formulated XR-RV3 GafChromic film was calibrated with National Institute of Standards and Technology (NIST) traceability for measurement of patient skin dose during fluoroscopically guided interventional procedures. Methods: The film was calibrated free-in-air to air kerma levels between 15 and 1100 cGy using four moderately filtered x-ray beam qualities (60, 80, 100, and 120 kVp). The calibration films were scanned with a commercial flatbed document scanner. Film reflective density-to-air kerma calibration curves were constructed for each beam quality, with both the orange and white sides facing the x-ray source. A method to correct for nonuniformity in scanner response (up to 25% depending on position) was developed to enable dose measurement with large films. The response of XR-RV3 film under patient backscattering conditions was examined using on-phantom film exposures and Monte Carlo simulations. Results: The response of XR-RV3 film to a given air kerma depended on kVp and film orientation. For a 200 cGy air kerma exposure with the orange side of the film facing the source, the film response increased by 20% from 60 to 120 kVp. At 500 cGy, the increase was 12%. When 500 cGy exposures were performed with the white side facing the x-ray source, the film response increased by 4.0% (60 kVp) to 9.9% (120 kVp) compared to the orange-facing orientation. On-phantom film measurements and Monte Carlo simulations show that using a NIST-traceable free-in-air calibration curve to determine air kerma in the presence of backscatter results in an error from 2% up to 8% depending on beam quality. The combined uncertainty in the air kerma measurement from the calibration curves and scanner nonuniformity correction was ±7.1% (95% C.I.). The film showed notable stability. Calibrations of film and scanner separated by 1 yr differed by 1.0%. Conclusions: XR-RV3 radiochromic film response to a given air kerma shows dependence on beam quality and film

Spectral and spectral-frequency methods of investigating atmosphereless bodies of the Solar system

International Nuclear Information System (INIS)

Busarev, Vladimir V; Prokof'eva-Mikhailovskaya, Valentina V; Bochkov, Valerii V

2007-01-01

A method of reflectance spectrophotometry of atmosphereless bodies of the Solar system, its specificity, and the means of eliminating basic spectral noise are considered. As a development, joining the method of reflectance spectrophotometry with the frequency analysis of observational data series is proposed. The combined spectral-frequency method allows identification of formations with distinctive spectral features, and estimations of their sizes and distribution on the surface of atmospherelss celestial bodies. As applied to investigations of asteroids 21 Lutetia and 4 Vesta, the spectral frequency method has given us the possibility of obtaining fundamentally new information about minor planets. (instruments and methods of investigation)

Stratus Ocean Reference Station (20 deg S, 85 deg W) Mooring Recovery and Deployment Cruise, R/V Ronald H. Brown Cruise 06-07, October 9-October 27, 2006

National Research Council Canada - National Science Library

Bigorre, Sebastien; Weller, Robert; Lord, Jeff; Whelan, Sean; Galbraith, Nancy; Wolfe, Dan; Bariteau, Ludovic; Ghate, Virendra; Zajaczkovski, Uriel; Vera, Alvaro

2007-01-01

.... During the October 2006 cruise of NOAA's R/V Ronald H. Brown to the ORS Stratus site, the primary activities where recovery of the Stratus 6 WHOI surface mooring that had been deployed in October...

Conductivity, water temperature, coccolith species, and others collected from R/V Bellows in Gulf of Mexico from 2011-09-29 to 2011-10-01 (NCEI Accession 0159233)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains conductivity, temperature and depth data R/V Bellows cruise BE-1204 in the DeSoto Canyon from September 29th to October 1st 2011. Census data...

AGB nucleosynthesis in the Large Magellanic Cloud. Detailed abundance analysis of the RV Tauri star MACHO 47.2496.8

NARCIS (Netherlands)

Reyniers, M.; Abia, C.; van Winckel, H.; Lloyd Evans, T.; Decin, L.K.E.; Eriksson, K.; Pollard, K.R.

2007-01-01

Context: .Abundance analysis of post-AGB objects as probes of AGB nucleosynthesis. Aims: .A detailed photospheric abundance study is performed on the carbon-rich post-AGB candidate MACHO 47.2496.8 in the LMC. Methods: .High-resolution, high signal-to-noise ESO VLT-UVES spectra of MACHO 47.2496.8 are

Identification and application of ssDNA aptamers against H₃₇Rv in the detection of Mycobacterium tuberculosis.

Science.gov (United States)

Aimaiti, Rusitanmujiang; Qin, Lianhua; Cao, Ting; Yang, Hua; Wang, Jie; Lu, Junmei; Huang, Xiaochen; Hu, Zhongyi

2015-11-01

Microscopy of direct smear with the Ziehl-Neelsen stain is still broadly used in tuberculosis diagnosis. However, this method suffers from low specificity and is difficult to distinguish Mycobacterium tuberculosis (MTB) from nontuberculosis mycobacterial (NTM), since all mycobacterial species are positive in Ziehl-Neelsen stain. In this study, we utilized whole cell SELEX to obtain species-specific aptamers for increasing the specificity of MTB detection. Whole cell SELEX was performed in MTB reference strain H37Rv by two selection processes based on enzyme-linked plate or Eppendorf tube, respectively. To increase success rate of generating aptamers, the selection processes were systematically monitored to understand the dynamic evolution of aptamers against complex structure of target bacteria. Two preponderant groups and ten high-affinity aptamers were obtained by analyzing the dynamic evolution. Preponderant aptamer MA1 from group I showed relatively high binding affinity with apparent dissociation constant (KD value) of 12.02 nM. Sandwich ELISA assay revealed five aptamer combinations effectively bound MTB strains in preliminary evaluation, especially the combination based on aptamer MA2 (another preponderant aptamer from group II) and MA1. Further evaluated in many other strains, MA2/MA1 combination effectively identified MTB from NTM or other pathogenic bacteria, and displayed the high specificity and sensitivity. Binding analysis of aptamer MA1 or MA2 by fluorescence microscopy observation showed high binding reactivity with H37Rv, low apparent cross-reactivity with M. marinum, and no apparent cross-reactivity with Enterobacter cloacae. Taken together, this study provides attractive candidate species-specific aptamers to effectively capture or discriminate MTB strains.

Estimation of spectral kurtosis

Science.gov (United States)

Sutawanir

2017-03-01

Rolling bearings are the most important elements in rotating machinery. Bearing frequently fall out of service for various reasons: heavy loads, unsuitable lubrications, ineffective sealing. Bearing faults may cause a decrease in performance. Analysis of bearing vibration signals has attracted attention in the field of monitoring and fault diagnosis. Bearing vibration signals give rich information for early detection of bearing failures. Spectral kurtosis, SK, is a parameter in frequency domain indicating how the impulsiveness of a signal varies with frequency. Faults in rolling bearings give rise to a series of short impulse responses as the rolling elements strike faults, SK potentially useful for determining frequency bands dominated by bearing fault signals. SK can provide a measure of the distance of the analyzed bearings from a healthy one. SK provides additional information given by the power spectral density (psd). This paper aims to explore the estimation of spectral kurtosis using short time Fourier transform known as spectrogram. The estimation of SK is similar to the estimation of psd. The estimation falls in model-free estimation and plug-in estimator. Some numerical studies using simulations are discussed to support the methodology. Spectral kurtosis of some stationary signals are analytically obtained and used in simulation study. Kurtosis of time domain has been a popular tool for detecting non-normality. Spectral kurtosis is an extension of kurtosis in frequency domain. The relationship between time domain and frequency domain analysis is establish through power spectrum-autocovariance Fourier transform. Fourier transform is the main tool for estimation in frequency domain. The power spectral density is estimated through periodogram. In this paper, the short time Fourier transform of the spectral kurtosis is reviewed, a bearing fault (inner ring and outer ring) is simulated. The bearing response, power spectrum, and spectral kurtosis are plotted to

Conductivity, water temperature, Coccolith species counts, and others collected from R/V Bellows in Gulf of Mexico from 2011-10-24 to 2011-10-26 (NCEI Accession 0159274)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset reports conductivity, temperature, and depth data from R/V Bellows cruise BE-1205. This cruise took place from October 24-26, 2011 from the Florida...

Spectral stratigraphy

Science.gov (United States)

Lang, Harold R.

1991-01-01

A new approach to stratigraphic analysis is described which uses photogeologic and spectral interpretation of multispectral remote sensing data combined with topographic information to determine the attitude, thickness, and lithology of strata exposed at the surface. The new stratigraphic procedure is illustrated by examples in the literature. The published results demonstrate the potential of spectral stratigraphy for mapping strata, determining dip and strike, measuring and correlating stratigraphic sequences, defining lithofacies, mapping biofacies, and interpreting geological structures.

Spectral unmixing: estimating partial abundances

CSIR Research Space (South Africa)

Debba, Pravesh

2009-01-01

Full Text Available techniques is complicated when considering very similar spectral signatures. Iron-bearing oxide/hydroxide/sulfate minerals have similar spectral signatures. The study focuses on how could estimates of abundances of spectrally similar iron-bearing oxide...

Physical profile data from CTD casts in the Gulf of Alaska from the R/V ALPHA HELIX from 2001-04-18 to 2001-12-11 (NODC Accession 0000739)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical profile data were collected from CTD casts in the Gulf of Alaska from the R/V Alpha Helix. Data were collected by Western Washington University (WWU) and...

Introduction to spectral theory

CERN Document Server

Levitan, B M

1975-01-01

This monograph is devoted to the spectral theory of the Sturm- Liouville operator and to the spectral theory of the Dirac system. In addition, some results are given for nth order ordinary differential operators. Those parts of this book which concern nth order operators can serve as simply an introduction to this domain, which at the present time has already had time to become very broad. For the convenience of the reader who is not familar with abstract spectral theory, the authors have inserted a chapter (Chapter 13) in which they discuss this theory, concisely and in the main without proofs, and indicate various connections with the spectral theory of differential operators.

Partial LVAD restores ventricular outputs and normalizes LV but not RV stress distributions in the acutely failing heart in silico

OpenAIRE

Sack, Kevin L.; Baillargeon, Brian; Acevedo-Bolton, Gabriel; Genet, Martin; Rebelo, Nuno; Kuhl, Ellen; Klein, Liviu; Weiselthaler, Georg M.; Burkhoff, Daniel; Franz, Thomas; Guccione, Julius M.

2016-01-01

Purpose: Heart failure is a worldwide epidemic that is unlikely to change as the population ages and life expectancy increases. We sought to detail significant recent improvements to the Dassault Systèmes Living Heart Model (LHM) and use the LHM to compute left ventricular (LV) and right ventricular (RV) myofiber stress distributions under the following 4 conditions: (1) normal cardiac function; (2) acute left heart failure (ALHF); (3) ALHF treated using an LV assist device (LVAD) flow rate o...

[Analysis of sensitive spectral bands for burning status detection using hyper-spectral images of Tiangong-01].

Science.gov (United States)

Qin, Xian-Lin; Zhu, Xi; Yang, Fei; Zhao, Kai-Rui; Pang, Yong; Li, Zeng-Yuan; Li, Xu-Zhi; Zhang, Jiu-Xing

2013-07-01

To obtain the sensitive spectral bands for detection of information on 4 kinds of burning status, i. e. flaming, smoldering, smoke, and fire scar, with satellite data, analysis was conducted to identify suitable satellite spectral bands for detection of information on these 4 kinds of burning status by using hyper-spectrum images of Tiangong-01 (TG-01) and employing a method combining statistics and spectral analysis. The results show that: in the hyper-spectral images of TG-01, the spectral bands differ obviously for detection of these 4 kinds of burning status; in all hyper-spectral short-wave infrared channels, the reflectance of flaming is higher than that of all other 3 kinds of burning status, and the reflectance of smoke is the lowest; the reflectance of smoke is higher than that of all other 3 kinds of burning status in the channels corresponding to hyper-spectral visible near-infrared and panchromatic sensors. For spectral band selection, more suitable spectral bands for flaming detection are 1 000.0-1 956.0 and 2 020.0-2 400.0 nm; the suitable spectral bands for identifying smoldering are 930.0-1 000.0 and 1 084.0-2 400.0 nm; the suitable spectral bands for smoke detection is in 400.0-920.0 nm; for fire scar detection, it is suitable to select bands with central wavelengths of 900.0-930.0 and 1 300.0-2 400.0 nm, and then to combine them to construct a detection model.

Spectral Decomposition Algorithm (SDA)

Data.gov (United States)

National Aeronautics and Space Administration — Spectral Decomposition Algorithm (SDA) is an unsupervised feature extraction technique similar to PCA that was developed to better distinguish spectral features in...

In-situ diagnosis of stone monuments; the Ruin Garden in Székesfehérvár

Science.gov (United States)

Theodoridou, Magdalini; Török, Ákos

2014-05-01

Székesfehérvár is a city in central Hungary, located around 65 km southwest of Budapest. In the Middle Ages (11th and 12th centuries), the city was a Royal residence and until the Turkish occupation in 1543, one of the most important cities of Hungary. The Ruin Garden of Székesfehérvár is a unique assemblage of monuments belonging to the cultural heritage of Hungary due to its important role in the Middle Ages as the coronation church for the kings of the Hungarian Christian Kingdom and the burial place for fifteen kings and other members of the royal families and the high nobility. It was also the home of the royal treasury and relics. It is comprised of a provostal church dedicated to Virgin Mary, so called today "Royal Basilica", royal tombs and related ecclesial and lay buildings. Since it has been nominated for "National Memorial Place", its present and future protection is required. Its several reconstructions and expansions throughout Hungarian history introduce another aspect of the importance of the historical site. By a quick overview of the current state of the monument, the presence of several lithotypes could be found among the remained building and decorative stones. Therefore, the research related to the materials in order to understand their composition, structure, origin and behavior was crucial not only for the conservation of that specific monument but also for a series of other historic structures in the Hungarian territory. In order to help the study of the Ruin Garden in Székesfehérvár, a series of maps was created based on in-situ investigations. Five wall sections were selected for the sake of the different lithotypes distribution and the different construction periods were the ruins belong to. The total mapped area covers about 30 m2 of the existing walls surfaces. Three different kinds of maps were designed for each wall section. The first series of maps depicts the different construction periods of the selected section of the

Life-cycle and genome of OtV5, a large DNA virus of the pelagic marine unicellular green alga Ostreococcus tauri.

Directory of Open Access Journals (Sweden)

Evelyne Derelle

Full Text Available Large DNA viruses are ubiquitous, infecting diverse organisms ranging from algae to man, and have probably evolved from an ancient common ancestor. In aquatic environments, such algal viruses control blooms and shape the evolution of biodiversity in phytoplankton, but little is known about their biological functions. We show that Ostreococcus tauri, the smallest known marine photosynthetic eukaryote, whose genome is completely characterized, is a host for large DNA viruses, and present an analysis of the life-cycle and 186,234 bp long linear genome of OtV5. OtV5 is a lytic phycodnavirus which unexpectedly does not degrade its host chromosomes before the host cell bursts. Analysis of its complete genome sequence confirmed that it lacks expected site-specific endonucleases, and revealed the presence of 16 genes whose predicted functions are novel to this group of viruses. OtV5 carries at least one predicted gene whose protein closely resembles its host counterpart and several other host-like sequences, suggesting that horizontal gene transfers between host and viral genomes may occur frequently on an evolutionary scale. Fifty seven percent of the 268 predicted proteins present no similarities with any known protein in Genbank, underlining the wealth of undiscovered biological diversity present in oceanic viruses, which are estimated to harbour 200Mt of carbon.

VARIATIONS OF THE 10 μm SILICATE FEATURES IN THE ACTIVELY ACCRETING T TAURI STARS: DG Tau AND XZ Tau

International Nuclear Information System (INIS)

Bary, Jeffrey S.; Leisenring, Jarron M.; Skrutskie, Michael F.

2009-01-01

Using the Infrared Spectrograph aboard the Spitzer Space Telescope, we observed multiple epochs of 11 actively accreting T Tauri stars in the nearby Taurus-Auriga star-forming region. In total, 88 low-resolution mid-infrared spectra were collected over 1.5 years in Cycles 2 and 3. The results of this multi-epoch survey show that the 10 μm silicate complex in the spectra of two sources-DG Tau and XZ Tau-undergoes significant variations with the silicate feature growing both weaker and stronger over month- and year-long timescales. Shorter timescale variations on day- to week-long timescales were not detected within the measured flux errors. The time resolution coverage of this data set is inadequate for determining if the variations are periodic. Pure emission compositional models of the silicate complex in each epoch of the DG Tau and XZ Tau spectra provide poor fits to the observed silicate features. These results agree with those of previous groups that attempted to fit only single-epoch observations of these sources. Simple two-temperature, two-slab models with similar compositions successfully reproduce the observed variations in the silicate features. These models hint at a self-absorption origin of the diminution of the silicate complex instead of a compositional change in the population of emitting dust grains. We discuss several scenarios for producing such variability including disk shadowing, vertical mixing, variations in disk heating, and disk wind events associated with accretion outbursts.

Physical profile data from XTD and XCTD casts in the Southern Ocean from the R/V XUE LONG from 28 December 2001 to 11 March 2002 (NODC Accession 0000734)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical profile data were collected from XTD and XCTD casts in the Southeast Indian Ocean and Weddell Gyre from the R/V XUE LONG. Data were collected by...

Hydrological, plankton and pigment observations in the Makassar Strait, Madura Strait and Eastern Java Sea by the R.V. Samudera, April 16 to May 19, 1975 (NODC Accession 7700306)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton and chemical data were collected using net and bottle casts from the R.V. SAMUDERA in the Makassar Strait, Madura Strait and Eastern Java Sea from 16...

Optimization of spectral printer modeling based on a modified cellular Yule-Nielsen spectral Neugebauer model.

Science.gov (United States)

Liu, Qiang; Wan, Xiaoxia; Xie, Dehong

2014-06-01

The study presented here optimizes several steps in the spectral printer modeling workflow based on a cellular Yule-Nielsen spectral Neugebauer (CYNSN) model. First, a printer subdividing method was developed that reduces the number of sub-models while maintaining the maximum device gamut. Second, the forward spectral prediction accuracy of the CYNSN model for each subspace of the printer was improved using back propagation artificial neural network (BPANN) estimated n values. Third, a sequential gamut judging method, which clearly reduced the complexity of the optimal sub-model and cell searching process during printer backward modeling, was proposed. After that, we further modified the use of the modeling color metric and comprehensively improved the spectral and perceptual accuracy of the spectral printer model. The experimental results show that the proposed optimization approaches provide obvious improvements in aspects of the modeling accuracy or efficiency for each of the corresponding steps, and an overall improvement of the optimized spectral printer modeling workflow was also demonstrated.

Stratus Ocean Reference Station (20 deg. S, 85 deg. W) : Mooring Recovery and Deployment Cruise, R/V Ronald H. Brown Cruise 05-05, September 26, 2005-October 21, 2005

National Research Council Canada - National Science Library

Hutto, Lara; Weller, Robert; Lord, Jeff; Smith, Jason; Bouchard, Paul; Fairall, Chris; Pezoa, Sergio; Bariteau, Ludovic; Lundquist, Jessica; Ghate, Virendra

2006-01-01

.... During the October 2005 cruise of NOAA's R/V Ronald H. Brown to the ORS Stratus site, the primary activities were recovery of the WHOl surface mooring that had been deployed in December 2004, deployment of a new...

Crystal structure of the toxin Msmeg_6760, the structural homolog of Mycobacterium tuberculosis Rv2035, a novel type II toxin involved in the hypoxic response

Energy Technology Data Exchange (ETDEWEB)

Bajaj, R. Alexandra; Arbing, Mark A.; Shin, Annie; Cascio, Duilio; Miallau, Linda (UCLA)

2016-11-19

The structure of Msmeg_6760, a protein of unknown function, has been determined. Biochemical and bioinformatics analyses determined that Msmeg_6760 interacts with a protein encoded in the same operon, Msmeg_6762, and predicted that the operon is a toxin–antitoxin (TA) system. Structural comparison of Msmeg_6760 with proteins of known function suggests that Msmeg_6760 binds a hydrophobic ligand in a buried cavity lined by large hydrophobic residues. Access to this cavity could be controlled by a gate–latch mechanism. The function of the Msmeg_6760 toxin is unknown, but structure-based predictions revealed that Msmeg_6760 and Msmeg_6762 are homologous to Rv2034 and Rv2035, a predicted novel TA system involved inMycobacterium tuberculosislatency during macrophage infection. The Msmeg_6760 toxin fold has not been previously described for bacterial toxins and its unique structural features suggest that toxin activation is likely to be mediated by a novel mechanism.

CTD, water quality, and pigment data collected from R/V Bellows cruise BE-1317 in the Gulf of Mexico from 2013-04-06 to 2013-04-08 (NCEI Accession 0160919)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset reports conductivity, temperature, and depth data collected during R/V Bellows cruise BE-1317 of the offshore shelf of the Florida Panhandle Bight at...

Contribution of Impaired Parasympathetic Activity to Right Ventricular Dysfunction and Pulmonary Vascular Remodeling in Pulmonary Arterial Hypertension.

Science.gov (United States)

da Silva Gonçalves Bós, Denielli; Van Der Bruggen, Cathelijne E E; Kurakula, Kondababu; Sun, Xiao-Qing; Casali, Karina R; Casali, Adenauer G; Rol, Nina; Szulcek, Robert; Dos Remedios, Cris; Guignabert, Christophe; Tu, Ly; Dorfmüller, Peter; Humbert, Marc; Wijnker, Paul J M; Kuster, Diederik W D; van der Velden, Jolanda; Goumans, Marie-José; Bogaard, Harm-Jan; Vonk-Noordegraaf, Anton; de Man, Frances S; Handoko, M Louis

2018-02-27

The beneficial effects of parasympathetic stimulation have been reported in left heart failure, but whether it would be beneficial for pulmonary arterial hypertension (PAH) remains to be explored. Here, we investigated the relationship between parasympathetic activity and right ventricular (RV) function in patients with PAH, and the potential therapeutic effects of pyridostigmine (PYR), an oral drug stimulating the parasympathetic activity through acetylcholinesterase inhibition, in experimental pulmonary hypertension (PH). Heart rate recovery after a maximal cardiopulmonary exercise test was used as a surrogate for parasympathetic activity. RV ejection fraction was assessed in 112 patients with PAH. Expression of nicotinic (α-7 nicotinic acetylcholine receptor) and muscarinic (muscarinic acetylcholine type 2 receptor) receptors, and acetylcholinesterase activity were evaluated in RV (n=11) and lungs (n=7) from patients with PAH undergoing heart/lung transplantation and compared with tissue obtained from controls. In addition, we investigated the effects of PYR (40 mg/kg per day) in experimental PH. PH was induced in male rats by SU5416 (25 mg/kg subcutaneously) injection followed by 4 weeks of hypoxia. In a subgroup, sympathetic/parasympathetic modulation was assessed by power spectral analysis. At week 6, PH status was confirmed by echocardiography, and rats were randomly assigned to vehicle or treatment (both n=12). At the end of the study, echocardiography was repeated, with additional RV pressure-volume measurements, along with lung, RV histological, and protein analyses. Patients with PAH with lower RV ejection fraction (<41%) had a significantly reduced heart rate recovery in comparison with patients with higher RV ejection fraction. In PAH RV samples, α-7 nicotinic acetylcholine receptor was increased and acetylcholinesterase activity was reduced versus controls. No difference in muscarinic acetylcholine type 2 receptor expression was observed. Chronic

Physical and nutrient profile data from bottle casts from the R/V ALPHA HELIX in Gulf of Alaska from 03 December 1990 to 11 December 1998 (NODC Accession 0000221)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical and nutrients data were collected using bottle casts from the R/V ALPHA HELIX in Gulf of Alaska from December 3, 1980 to December 11, 1998. These data were...

TH28 (Krautter's star) and its string of Herbig-Haro objects

International Nuclear Information System (INIS)

Graham, J.A.; Heyer, M.H.

1988-01-01

A high-quality spectrogram of the unusual T Tauri-like star Th28 and its string of Herbig-Haro (HH) objects has been obtained. New velocities and line intensities for the star and the gaseous knots are reported, and data are given for a third HH object located 87 arcsec to the SE along the same collimation axis as defined by the other features. Th28 has a heliocentric velocity of +5 km/s which is close to the velocity of the CO in the area. The star's spectral type is probably in the G8-K2 range. 24 references

Spectral radius of graphs

CERN Document Server

Stevanovic, Dragan

2015-01-01

Spectral Radius of Graphs provides a thorough overview of important results on the spectral radius of adjacency matrix of graphs that have appeared in the literature in the preceding ten years, most of them with proofs, and including some previously unpublished results of the author. The primer begins with a brief classical review, in order to provide the reader with a foundation for the subsequent chapters. Topics covered include spectral decomposition, the Perron-Frobenius theorem, the Rayleigh quotient, the Weyl inequalities, and the Interlacing theorem. From this introduction, the

High-cadence, High-resolution Spectroscopic Observations of Herbig Stars HD 98922 and V1295 Aquila

Energy Technology Data Exchange (ETDEWEB)

Aarnio, Alicia N.; Monnier, John D.; Calvet, Nuria; Che, Xiao [Department of Astronomy, University of Michigan, 311 West Hall, 1085 S. University Avenue, Ann Arbor, MI 48109 (United States); Harries, Tim J.; Kraus, Stefan; Acreman, David [Department of Physics and Astronomy, University of Exeter, Stocker Road, Exeter EX4 4QL (United Kingdom)

2017-10-10

Recent observational work has indicated that mechanisms for accretion and outflow in Herbig Ae/Be star–disk systems may differ from magnetospheric accretion (MA) as it is thought to occur in T Tauri star–disk systems. In this work, we assess the temporal evolution of spectral lines probing accretion and mass loss in Herbig Ae/Be systems and test for consistency with the MA paradigm. For two Herbig Ae/Be stars, HD 98922 (B9e) and V1295 Aql (A2e), we have gathered multi-epoch (∼years) and high-cadence (∼minutes) high-resolution optical spectra to probe a wide range of kinematic processes. Employing a line equivalent width evolution correlation metric introduced here, we identify species co-evolving (indicative of common line origin) via novel visualization. We interferometrically constrain often problematically degenerate parameters, inclination and inner-disk radius, allowing us to focus on the structure of the wind, magnetosphere, and inner gaseous disk in radiative transfer models. Over all timescales sampled, the strongest variability occurs within the blueshifted absorption components of the Balmer series lines; the strength of variability increases with the cadence of the observations. Finally, high-resolution spectra allow us to probe substructure within the Balmer series’ blueshifted absorption components: we observe static, low-velocity features and time-evolving features at higher velocities. Overall, we find the observed line morphologies and variability are inconsistent with a scaled-up T Tauri MA scenario. We suggest that as magnetic field structure and strength change dramatically with increasing stellar mass from T Tauri to Herbig Ae/Be stars, so too may accretion and outflow processes.

High-cadence, High-resolution Spectroscopic Observations of Herbig Stars HD 98922 and V1295 Aquila

International Nuclear Information System (INIS)

Aarnio, Alicia N.; Monnier, John D.; Calvet, Nuria; Che, Xiao; Harries, Tim J.; Kraus, Stefan; Acreman, David

2017-01-01

Recent observational work has indicated that mechanisms for accretion and outflow in Herbig Ae/Be star–disk systems may differ from magnetospheric accretion (MA) as it is thought to occur in T Tauri star–disk systems. In this work, we assess the temporal evolution of spectral lines probing accretion and mass loss in Herbig Ae/Be systems and test for consistency with the MA paradigm. For two Herbig Ae/Be stars, HD 98922 (B9e) and V1295 Aql (A2e), we have gathered multi-epoch (∼years) and high-cadence (∼minutes) high-resolution optical spectra to probe a wide range of kinematic processes. Employing a line equivalent width evolution correlation metric introduced here, we identify species co-evolving (indicative of common line origin) via novel visualization. We interferometrically constrain often problematically degenerate parameters, inclination and inner-disk radius, allowing us to focus on the structure of the wind, magnetosphere, and inner gaseous disk in radiative transfer models. Over all timescales sampled, the strongest variability occurs within the blueshifted absorption components of the Balmer series lines; the strength of variability increases with the cadence of the observations. Finally, high-resolution spectra allow us to probe substructure within the Balmer series’ blueshifted absorption components: we observe static, low-velocity features and time-evolving features at higher velocities. Overall, we find the observed line morphologies and variability are inconsistent with a scaled-up T Tauri MA scenario. We suggest that as magnetic field structure and strength change dramatically with increasing stellar mass from T Tauri to Herbig Ae/Be stars, so too may accretion and outflow processes.

Distriktssköterskors erfarenheter av psykosocial arbetsmiljö i primärvården : En kvantitativ enkätstudie

OpenAIRE

Pettersson, Elin; Thomsgård, Elin

2018-01-01

Bakgrund I begreppet arbetsmiljö ingår de fysiska, psykiska och sociala upplevelser som en individ har i sitt arbete. Distriktssköterskans arbetsplats kan vara stressig på flera sätt vilket kan påverka den psykosociala arbetsmiljön negativt. Tillfredsställelse och motivation i arbetslivet är grundläggande för god psykosocial arbetsmiljö och för en individs goda hälsa. Syfte Att undersöka distriktsköterskors erfarenheter av psykosocial arbetsmiljö i primärvården. Metod Föreliggande studie har ...

Spectral L2/L1 norm: A new perspective for spectral kurtosis for characterizing non-stationary signals

Science.gov (United States)

Wang, Dong

2018-05-01

Thanks to the great efforts made by Antoni (2006), spectral kurtosis has been recognized as a milestone for characterizing non-stationary signals, especially bearing fault signals. The main idea of spectral kurtosis is to use the fourth standardized moment, namely kurtosis, as a function of spectral frequency so as to indicate how repetitive transients caused by a bearing defect vary with frequency. Moreover, spectral kurtosis is defined based on an analytic bearing fault signal constructed from either a complex filter or Hilbert transform. On the other hand, another attractive work was reported by Borghesani et al. (2014) to mathematically reveal the relationship between the kurtosis of an analytical bearing fault signal and the square of the squared envelope spectrum of the analytical bearing fault signal for explaining spectral correlation for quantification of bearing fault signals. More interestingly, it was discovered that the sum of peaks at cyclic frequencies in the square of the squared envelope spectrum corresponds to the raw 4th order moment. Inspired by the aforementioned works, in this paper, we mathematically show that: (1) spectral kurtosis can be decomposed into squared envelope and squared L2/L1 norm so that spectral kurtosis can be explained as spectral squared L2/L1 norm; (2) spectral L2/L1 norm is formally defined for characterizing bearing fault signals and its two geometrical explanations are made; (3) spectral L2/L1 norm is proportional to the square root of the sum of peaks at cyclic frequencies in the square of the squared envelope spectrum; (4) some extensions of spectral L2/L1 norm for characterizing bearing fault signals are pointed out.

CTD, water quality, and phytoplankton data from the R/V Bellows cruise BE-1322 in the Gulf of Mexico from 2013-06-02 to 2013-06-04 (NCEI Accession 0161217)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains conductivity, temperature, and depth data from R/V Bellows cruise BE-1322 of the offshore shelf of the Florida Panhandle Bight at the head of...

Spectral methods. Fundamentals in single domains

International Nuclear Information System (INIS)

Canuto, C.

2006-01-01

Since the publication of ''Spectral Methods in Fluid Dynamics'' 1988, spectral methods have become firmly established as a mainstream tool for scientific and engineering computation. The authors of that book have incorporated into this new edition the many improvements in the algorithms and the theory of spectral methods that have been made since then. This latest book retains the tight integration between the theoretical and practical aspects of spectral methods, and the chapters are enhanced with material on the Galerkin with numerical integration version of spectral methods. The discussion of direct and iterative solution methods is also greatly expanded. (orig.)

Vowel Inherent Spectral Change

CERN Document Server

Assmann, Peter

2013-01-01

It has been traditional in phonetic research to characterize monophthongs using a set of static formant frequencies, i.e., formant frequencies taken from a single time-point in the vowel or averaged over the time-course of the vowel. However, over the last twenty years a growing body of research has demonstrated that, at least for a number of dialects of North American English, vowels which are traditionally described as monophthongs often have substantial spectral change. Vowel Inherent Spectral Change has been observed in speakers’ productions, and has also been found to have a substantial effect on listeners’ perception. In terms of acoustics, the traditional categorical distinction between monophthongs and diphthongs can be replaced by a gradient description of dynamic spectral patterns. This book includes chapters addressing various aspects of vowel inherent spectral change (VISC), including theoretical and experimental studies of the perceptually relevant aspects of VISC, the relationship between ar...

Role of Mutations in Dihydrofolate Reductase DfrA (Rv2763c) and Thymidylate Synthase ThyA (Rv2764c) in Mycobacterium tuberculosis Drug Resistance

KAUST Repository

Koser, C. U.

2010-09-17

We would like to comment on a number of recent reports in this journal (6, 8, 12, 18) concerning Mycobacterium tuberculosis dihydrofolate reductase (DHFR), encoded by dfrA (Rv2763c). Around 36% of phenotypically para-aminosalicylic acid (PAS)-resistant M. tuberculosis strains harbor mutations in thyA (Rv2764c), which encodes a thymidylate synthase (20). In their effort to elucidate the remaining unknown resistance mechanism(s), Mathys et al. extended their sequence analysis to a number of additional genes, including dfrA (12). It was unclear whether the three dfrA mutations they identified in the PAS-resistant strains P-693 and P-3158 could contribute to PAS resistance on their own. Nonetheless, these findings are notable for two reasons. First, isoniazid (INH) has been shown to inhibit M. tuberculosis DHFR in vitro (1). Whether the same holds true for ethionamide, which shares a number of common resistance mechanisms with INH, was not tested (J. Blanchard, personal communication). In any case, the clinical relevance of DHFR-mediated INH resistance remains enigmatic. To date, only Ho et al. have addressed this question, but they did not identify any dfrA mutations in a screen of 127 INH-resistant clinical isolates (8). Consequently, Mathys et al. remain the first to describe mutations in this target (12). However, given that isolates with mutated DHFR are members of a cluster with baseline INH resistance, the importance of these mutations with respect to INH resistance remains unclear. Irrespective of their relevance in INH resistance, these dfrA mutations are noteworthy for a second reason. Contrary to previous wisdom, Forgacs et al. recently showed that M. tuberculosis is sensitive to the drug combination trimethoprim-sulfamethoxazole (TMP-SMX) (6, 18). DHFR is competitively inhibited by TMP, and consequently, mutations therein lead to resistance in a variety of organisms (9, 16, 19). The crystal structures of the wild-type M. tuberculosis DHFR in complex with

WATER TEMPERATURE and SALINITY - SURFACE WATER, and other parameters collected from R.V. Celtic Explorer in Mid Atlantic Ridge from 2016-05-12 to 2016-05-21 (NCEI Accession 0157069)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This dataset contains in situ sea surface measurements from R.V. Celtic Explorer in Mid Altlantic Ridge. The survey was conducted between May 12th and May 21, 2016...

Temperature profile and other data from surface measurements casts from the R/V ATLANTIC in a world-wide survey from 17 March 1900 to 08 March 1998 (NODC Accession 0000241)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Temperature profile and other data were collected from the R/V ATLANTIC in a world-wide distribution from March 17, 1900 to March 8, 1996. Data were collected by...

Benthic organisms collected using net casts and other instruments from the R/V VENTURE in the Gulf of Mexico from 27 October 1980 and 29 April 1984 (NODC Accession 8600027)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic organisms were collected using net, sediment sampler casts, and other instruments from the R/V VENTURE in the Gulf of Mexico from 27 October 1980 to 29 April...

On Detecting New Worlds: The Art of Doppler Spectroscopy with Iodine Cells

Science.gov (United States)

Wang, Sharon Xuesong

2016-08-01

The first discovery of an extra-solar planet (exoplanet) around a main-sequence star, 51 Peg b, discovered using Doppler spectroscopy, opened up the field of exoplanets. For more than a decade, the dominant way for finding exoplanets was using precise Doppler spectroscopy to measure the radial velocity (RV) changes of stars. Today, precise Doppler spectroscopy is still crucial for the discovery and characterization of exoplanets, and it has a great chance for finding the first rocky exoplanet in the Habitable Zone of its host star. However, such endeavor requires an exquisite precision of 10-50 cm/s while the current state of the art is 1 m/s. This thesis set out to improve the RV precision of two precise Doppler spectrometers on two 10-meter class telescopes: HET/HRS and Keck/HIRES. Both of these spectrometers use iodine cells as their wavelength calibration sources, and their spectral data are being analyzed via forward modeling to estimate stellar RVs. Neither HET/HRS or Keck/HIRES deliver an RV precision at the photon-limited level, meaning that there are additional RV systematic errors caused by instrumental changes or errors in the data analysis. HET/HRS has an RV precision of 3-5 m/s, while Keck/HIRES has about 1-2 m/s. I have found that the leading cause behind HET/HRS's "under-performance" in comparison to Keck/HIRES is temperature changes of the iodine gas cell (and thus an inaccurate iodine reference spectrum). Another reason is the insufficient modeling of the HET/HRS instrumental profile. While Keck/HIRES does not suffer from these problems, it also has several RV systematic error sources of con siderable sizes. The work in this thesis has revealed that the errors in Keck/HIRES's stellar reference spectrum add about 1 m/s to the error budget and are the major drivers behind the spurious RV signal at the period of a sidereal year and its harmonics. Telluric contamination and errors caused by the spectral fitting algorithm also contribute on the level of

Spectrally accurate contour dynamics

International Nuclear Information System (INIS)

Van Buskirk, R.D.; Marcus, P.S.

1994-01-01

We present an exponentially accurate boundary integral method for calculation the equilibria and dynamics of piece-wise constant distributions of potential vorticity. The method represents contours of potential vorticity as a spectral sum and solves the Biot-Savart equation for the velocity by spectrally evaluating a desingularized contour integral. We use the technique in both an initial-value code and a newton continuation method. Our methods are tested by comparing the numerical solutions with known analytic results, and it is shown that for the same amount of computational work our spectral methods are more accurate than other contour dynamics methods currently in use

Assessing the role of spectral and intensity cues in spectral ripple detection and discrimination in cochlear-implant users.

Science.gov (United States)

Anderson, Elizabeth S; Oxenham, Andrew J; Nelson, Peggy B; Nelson, David A

2012-12-01

Measures of spectral ripple resolution have become widely used psychophysical tools for assessing spectral resolution in cochlear-implant (CI) listeners. The objective of this study was to compare spectral ripple discrimination and detection in the same group of CI listeners. Ripple detection thresholds were measured over a range of ripple frequencies and were compared to spectral ripple discrimination thresholds previously obtained from the same CI listeners. The data showed that performance on the two measures was correlated, but that individual subjects' thresholds (at a constant spectral modulation depth) for the two tasks were not equivalent. In addition, spectral ripple detection was often found to be possible at higher rates than expected based on the available spectral cues, making it likely that temporal-envelope cues played a role at higher ripple rates. Finally, spectral ripple detection thresholds were compared to previously obtained speech-perception measures. Results confirmed earlier reports of a robust relationship between detection of widely spaced ripples and measures of speech recognition. In contrast, intensity difference limens for broadband noise did not correlate with spectral ripple detection measures, suggesting a dissociation between the ability to detect small changes in intensity across frequency and across time.

R/V KAIYO cruises from 1995-2000 collecting CTD, XCTD, and dissolved oxygen data in support of the Tropical Ocean Climate Study in the Tropical Western Pacific (NODC Accession 0048913)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data set includes 10 cruises of the R/V Kaiyo of the Japan Marine Science and Technology Center conducted in 1995-2000 as part of the Tropical Ocean Climate...

Overproduction, purification and preliminary X-ray diffraction analysis of a sulfotransferase from Mycobacterium tuberculosis H37Rv

International Nuclear Information System (INIS)

Tanaka, Shotaro; Moriizumi, Yuuji; Kimura, Makoto; Kakuta, Yoshimitsu

2004-01-01

A sulfotransferase from M. tuberculosis was crystallized and preliminarily analyzed using X-ray diffraction. Sulfotransferase STF1 from the Mycobacterium tuberculosis H37Rv genome was overproduced in Escherichia coli, purified and crystallized using the hanging-drop vapour-diffusion method. The crystals diffract to 1.5 Å resolution using synchrotron radiation at SPring-8. The crystals are monoclinic and belong to space group P2 1 , with unit-cell parameters a = 40.86, b = 95.76, c = 48.04 Å, β = 106.43°. The calculated Matthews coefficient is approximately 2.1 Å 3 Da −1 assuming the presence of one molecule of STF1 in the asymmetric unit. A substrate-binding assay using a PAP–agarose column suggests that STF1 exhibits sulfotransferase activity

Intersection numbers of spectral curves

CERN Document Server

Eynard, B.

2011-01-01

We compute the symplectic invariants of an arbitrary spectral curve with only 1 branchpoint in terms of integrals of characteristic classes in the moduli space of curves. Our formula associates to any spectral curve, a characteristic class, which is determined by the laplace transform of the spectral curve. This is a hint to the key role of Laplace transform in mirror symmetry. When the spectral curve is y=\\sqrt{x}, the formula gives Kontsevich--Witten intersection numbers, when the spectral curve is chosen to be the Lambert function \\exp{x}=y\\exp{-y}, the formula gives the ELSV formula for Hurwitz numbers, and when one chooses the mirror of C^3 with framing f, i.e. \\exp{-x}=\\exp{-yf}(1-\\exp{-y}), the formula gives the Marino-Vafa formula, i.e. the generating function of Gromov-Witten invariants of C^3. In some sense this formula generalizes ELSV, Marino-Vafa formula, and Mumford formula.

Characterization of HIV-1 gp120 antibody specificities induced in anogenital secretions of RV144 vaccine recipients after late boost immunizations.

Directory of Open Access Journals (Sweden)

Siriwat Akapirat

Full Text Available Sexual transmission is the principal driver of the human immunodeficiency virus (HIV pandemic. Understanding HIV vaccine-induced immune responses at mucosal surfaces can generate hypotheses regarding mechanisms of protection, and may influence vaccine development. The RV144 (ClinicalTrials.gov NCT00223080 efficacy trial showed protection against HIV infections but mucosal samples were not collected, therefore, the contribution of mucosal antibodies to preventing HIV-1 acquisition is unknown. Here, we report the generation, magnitude and persistence of antibody responses to recombinant gp120 envelope and antigens including variable one and two loop scaffold antigens (gp70V1V2 previously shown to correlate with risk in RV144. We evaluated antibody responses to gp120 A244gD and gp70V1V2 92TH023 (both CRF01_AE and Case A2 (subtype B in cervico-vaginal mucus (CVM, seminal plasma (SP and rectal secretions (RS from HIV-uninfected RV144 vaccine recipients, who were randomized to receive two late boosts of ALVAC-HIV/AIDSVAX®B/E, AIDSVAX®B/E, or ALVAC-HIV alone at 0 and 6 months. Late vaccine boosting increased IgG geometric mean titers (GMT to gp120 A244gD in AIDSVAX®B/E and ALVAC-HIV/AIDSVAX®B/E CVM (28 and 17 fold, respectively, followed by SP and RS. IgG to gp70V1V2 92TH023 increased in AIDSVAX®B/E and ALVAC-HIV/AIDSVAX®B/E CVM (11-17 fold and SP (2 fold two weeks post first boost. IgG to Case A2 was only detected in AIDSVAX®B/E and ALVAC-HIV/AIDSVAX®B/E CVM. Mucosal IgG to gp120 A244gD (CVM, SP, RS, gp70V1V2 92TH023 (CVM, SP, and Case A2 (CVM correlated with plasma IgG levels (p<0.001. Although the magnitude of IgG responses declined after boosting, anti-gp120 A244gD IgG responses in CVM persisted for 12 months post final vaccination. Further studies in localization, persistence and magnitude of envelope specific antibodies (IgG and dimeric IgA in anogenital secretions will help determine their role in preventing mucosal HIV acquisition.

Physical and nutrients profile data from the R/V ALPHA HELIX using bottle casts in the Gulf of Alaska from 06 April 1989 to 11 April 1989 (NODC Accession 0000223)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical and nutrient profile data were collected using bottle casts from the R/V ALPHA HELIX in the Gulf of Alaska from April 6, 1989 to April 11, 1989. Data were...

Atmospheric parameters, spectral indexes and their relation to CPV spectral performance

Energy Technology Data Exchange (ETDEWEB)

Núñez, Rubén, E-mail: ruben.nunez@ies-def.upm.es; Antón, Ignacio, E-mail: ruben.nunez@ies-def.upm.es; Askins, Steve, E-mail: ruben.nunez@ies-def.upm.es; Sala, Gabriel, E-mail: ruben.nunez@ies-def.upm.es [Instituto de Energía Solar - Universidad Politécnica de Madrid, Instituto de Energía Solar, ETSI Telecomunicación, Ciudad Universitaria 28040 Madrid (Spain)

2014-09-26

Air Mass and atmosphere components (basically aerosol (AOD) and precipitable water (PW)) define the absorption of the sunlight that arrive to Earth. Radiative models such as SMARTS or MODTRAN use these parameters to generate an equivalent spectrum. However, complex and expensive instruments (as AERONET network devices) are needed to obtain AOD and PW. On the other hand, the use of isotype cells is a convenient way to characterize spectrally a place for CPV considering that they provide the photocurrent of the different internal subcells individually. Crossing data from AERONET station and a Tri-band Spectroheliometer, a model that correlates Spectral Mismatch Ratios and atmospheric parameters is proposed. Considering the amount of stations of AERONET network, this model may be used to estimate the spectral influence on energy performance of CPV systems close to all the stations worldwide.

Calibration with near-continuous spectral measurements

DEFF Research Database (Denmark)

Nielsen, Henrik Aalborg; Rasmussen, Michael; Madsen, Henrik

2001-01-01

In chemometrics traditional calibration in case of spectral measurements express a quantity of interest (e.g. a concentration) as a linear combination of the spectral measurements at a number of wavelengths. Often the spectral measurements are performed at a large number of wavelengths and in thi...... by an example in which the octane number of gasoline is related to near infrared spectral measurements. The performance is found to be much better that for the traditional calibration methods....

Calibrating spectral images using penalized likelihood

NARCIS (Netherlands)

Heijden, van der G.W.A.M.; Glasbey, C.

2003-01-01

A new method is presented for automatic correction of distortions and for spectral calibration (which band corresponds to which wavelength) of spectral images recorded by means of a spectrograph. The method consists of recording a bar-like pattern with an illumination source with spectral bands

Spectral Learning for Supervised Topic Models.

Science.gov (United States)

Ren, Yong; Wang, Yining; Zhu, Jun

2018-03-01

Supervised topic models simultaneously model the latent topic structure of large collections of documents and a response variable associated with each document. Existing inference methods are based on variational approximation or Monte Carlo sampling, which often suffers from the local minimum defect. Spectral methods have been applied to learn unsupervised topic models, such as latent Dirichlet allocation (LDA), with provable guarantees. This paper investigates the possibility of applying spectral methods to recover the parameters of supervised LDA (sLDA). We first present a two-stage spectral method, which recovers the parameters of LDA followed by a power update method to recover the regression model parameters. Then, we further present a single-phase spectral algorithm to jointly recover the topic distribution matrix as well as the regression weights. Our spectral algorithms are provably correct and computationally efficient. We prove a sample complexity bound for each algorithm and subsequently derive a sufficient condition for the identifiability of sLDA. Thorough experiments on synthetic and real-world datasets verify the theory and demonstrate the practical effectiveness of the spectral algorithms. In fact, our results on a large-scale review rating dataset demonstrate that our single-phase spectral algorithm alone gets comparable or even better performance than state-of-the-art methods, while previous work on spectral methods has rarely reported such promising performance.

Metallicity and the spectral energy distribution and spectral types of dwarf O-stars

NARCIS (Netherlands)

Mokiem, MR; Martin-Hernandez, NL; Lenorzer, A; de Koter, A; Tielens, AGGA

We present a systematic study of the effect of metallicity on the stellar spectral energy distribution (SED) of 0 main sequence (dwarf) stars, focussing on the hydrogen and helium ionizing continua, and on the optical and near-IR lines used for spectral classification. The spectra are based on

Metallicity and the spectral energy distribution and spectral types of dwarf O-stars

NARCIS (Netherlands)

Mokiem, M.R.; Martín-Hernández, N.L.; Lenorzer, A.; de Koter, A.; Tielens, A.G.G.M.

2004-01-01

We present a systematic study of the effect of metallicity on the stellar spectral energy distribution (SED) of O main sequence (dwarf) stars, focussing on the hydrogen and helium ionizing continua, and on the optical and near-IR lines used for spectral classification. The spectra are based on

Spectral filtering for plant production

Energy Technology Data Exchange (ETDEWEB)

Young, R.E.; McMahon, M.J.; Rajapakse, N.C.; Becoteau, D.R.

1994-12-31

Research to date suggests that spectral filtering can be an effective alternative to chemical growth regulators for altering plant development. If properly implemented, it can be nonchemical and environmentally friendly. The aqueous CuSO{sub 4}, and CuCl{sub 2} solutions in channelled plastic panels have been shown to be effective filters, but they can be highly toxic if the solutions contact plants. Some studies suggest that spectral filtration limited to short EOD intervals can also alter plant development. Future research should be directed toward confirmation of the influence of spectral filters and exposure times on a broader range of plant species and cultivars. Efforts should also be made to identify non-noxious alternatives to aqueous copper solutions and/or to incorporate these chemicals permanently into plastic films and panels that can be used in greenhouse construction. It would also be informative to study the impacts of spectral filters on insect and microbal populations in plant growth facilities. The economic impacts of spectral filtering techniques should be assessed for each delivery methodology.

Evaluating the capabilities of vegetation spectral indices on chlorophyll content estimation at Sentinel-2 spectral resolutions

Science.gov (United States)

Sun, Qi; Jiao, Quanjun; Dai, Huayang

2018-03-01

Chlorophyll is an important pigment in green plants for photosynthesis and obtaining the energy for growth and development. The rapid, nondestructive and accurate estimation of chlorophyll content is significant for understanding the crops growth, monitoring the disease and insect, and assessing the yield of crops. Sentinel-2 equipped with the Multi-Spectral Instrument (MSI), which will provide images with high spatial, spectral and temporal resolution. It covers the VNIR/SWIR spectral region in 13 bands and incorporates two new spectral bands in the red-edge region and a spatial resolution of 20nm, which can be used to derive vegetation indices using red-edge bands. In this paper, we will focus on assessing the potential of vegetation spectral indices for retrieving chlorophyll content from Sentinel-2 at different angles. Subsequently, we used in-situ spectral data and Sentinel-2 data to test the relationship between VIs and chlorophyll content. The REP, MTCI, CIred-edge, CIgreen, Macc01, TCARI/OSAVI [705,750], NDRE1 and NDRE2 were calculated. NDRE2 index displays a strongly similar result for hyperspectral and simulated Sentinel-2 spectral bands (R2 =0.53, R2 =0.51, for hyperspectral and Sentinel-2, respectively). At different observation angles, NDRE2 has the smallest difference in performance (R2 = 0.51, R2 =0.64, at 0° and 15° , respectively).

Physical profile data from the R/V ALPHA HELIX in the Gulf of Alaska as part of the GLOBEC Project from 02 October 1998 to 07 December 1999 (NODC Accession 0000238)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Physical profile data were collected from the R/V ALPHA HELIX in the Gulf of Alaska from October 2, 1998 to December 7, 1999. Data were submitted by the University...

Hydrological, plankton and pigment observations in the South China Sea (C.S.K. Program, Cruise II) and around Seribu Islands by R.V. Jalanidhi, December 6-December 28, 1971 (NODC Accession 7300974)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Hydrological, plankton and pigment observations from the R.V. JALANIDHI in the South China Sea and other areas. Data were collected from 06 December 1971 to 28...

HDE 245059: A WEAK-LINED T TAURI BINARY REVEALED BY CHANDRA AND KECK

International Nuclear Information System (INIS)

Baldovin-Saavedra, C.; Audard, M.; Duchene, G.; Guedel, M.; Skinner, S.L.; Paerels, F. B. S.; Ghez, A.; McCabe, C.

2009-01-01

We present the Chandra High Energy Transmission Grating Spectrometer and Keck observations of HDE 245059, a young weak-lined T Tauri star (WTTS), member of the pre-main-sequence group in the λ Orionis Cluster. Our high spatial resolution, near-infrared observations with Keck reveal that HDE 245059 is in fact a binary separated by 0.''87, probably composed of two WTTS based on their color indices. Based on this new information we have obtained an estimate of the masses of the binary components; ∼3 M sun and ∼2.5 M sun for the north and south components, respectively. We have also estimated the age of the system to be ∼2-3 Myr. We detect both components of the binary in the zeroth-order Chandra image and in the grating spectra. The light curves show X-ray variability of both sources and in particular a flaring event in the weaker southern component. The spectra of both stars show similar features: a combination of cool and hot plasma as demonstrated by several iron lines from Fe XVII to Fe XXV and a strong bremsstrahlung continuum at short wavelengths. We have fitted the combined grating and zeroth-order spectrum (considering the contribution of both stars) in XSPEC. The coronal abundances and emission measure distribution for the binary have been obtained using different methods, including a continuous emission measure distribution and a multi-temperature approximation. In all cases we have found that the emission is dominated by plasma between ∼8 and ∼15 MK a soft component at ∼4 MK and a hard component at ∼50 MK are also detected. The value of the hydrogen column density was low, N H ∼ 8 x 10 19 cm -2 , likely due to the clearing of the inner region of the λ Orionis cloud, where HDE 245059 is located. The abundance pattern shows an inverse first ionization potential effect for all elements from O to Fe, the only exception being Ca. To obtain the properties of the binary components, a 3-T model was fitted to the individual zeroth-order spectra

A HIGH-PRECISION NEAR-INFRARED SURVEY FOR RADIAL VELOCITY VARIABLE LOW-MASS STARS USING CSHELL AND A METHANE GAS CELL

International Nuclear Information System (INIS)

Gagné, Jonathan; Plavchan, Peter; Gao, Peter; Anglada-Escude, Guillem; Furlan, Elise; Brinkworth, Carolyn; Ciardi, David R.; Davison, Cassy; Henry, Todd J.; White, Russel; Tanner, Angelle; Riedel, Adric R.; Latham, David; Johnson, John A.; Bottom, Michael; Mills, Sean; Beichman, Chas; Wallace, Kent; Mennesson, Bertrand; Von Braun, Kaspar

2016-01-01

We present the results of a precise near-infrared (NIR) radial velocity (RV) survey of 32 low-mass stars with spectral types K2–M4 using CSHELL at the NASA InfraRed Telescope Facility in the K band with an isotopologue methane gas cell to achieve wavelength calibration and a novel, iterative RV extraction method. We surveyed 14 members of young (≈25–150 Myr) moving groups, the young field star ε Eridani, and 18 nearby (<25 pc) low-mass stars and achieved typical single-measurement precisions of 8–15 m s −1 with a long-term stability of 15–50 m s −1 over longer baselines. We obtain the best NIR RV constraints to date on 27 targets in our sample, 19 of which were never followed by high-precision RV surveys. Our results indicate that very active stars can display long-term RV variations as low as ∼25–50 m s −1 at ≈2.3125 μ m, thus constraining the effect of jitter at these wavelengths. We provide the first multiwavelength confirmation of GJ 876 bc and independently retrieve orbital parameters consistent with previous studies. We recovered RV variabilities for HD 160934 AB and GJ 725 AB that are consistent with their known binary orbits, and nine other targets are candidate RV variables with a statistical significance of 3 σ –5 σ . Our method, combined with the new iSHELL spectrograph, will yield long-term RV precisions of ≲5 m s −1 in the NIR, which will allow the detection of super-Earths near the habitable zone of mid-M dwarfs.

On Longitudinal Spectral Coherence

DEFF Research Database (Denmark)

Kristensen, Leif

1979-01-01

It is demonstrated that the longitudinal spectral coherence differs significantly from the transversal spectral coherence in its dependence on displacement and frequency. An expression for the longitudinal coherence is derived and it is shown how the scale of turbulence, the displacement between ...... observation sites and the turbulence intensity influence the results. The limitations of the theory are discussed....

Speech recognition from spectral dynamics

Indian Academy of Sciences (India)

Carrier nature of speech; modulation spectrum; spectral dynamics ... the relationships between phonetic values of sounds and their short-term spectral envelopes .... the number of free parameters that need to be estimated from training data.

Temperature, salinity, microplankton abundance and other data from three cruises of the R/V Cape Hatteras in the NW Atlantic to study bacterial activity, August 2001 - March 2002 (NODC Accession 0001675)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This data is from three cruises on the R/V Cape Hatteras taken in Aug and October 2001, and March 2002 from Boothbay Harbor Maine to the Sargasso Sea. The purpose of...

Meson spectral functions at finite temperature

International Nuclear Information System (INIS)

Wetzorke, I.; Karsch, F.; Laermann, E.; Petreczky, P.; Stickan, S.

2001-10-01

The Maximum Entropy Method provides a Bayesian approach to reconstruct the spectral functions from discrete points in Euclidean time. The applicability of the approach at finite temperature is probed with the thermal meson correlation function. Furthermore the influence of fuzzing/smearing techniques on the spectral shape is investigated. We present first results for meson spectral functions at several temperatures below and above T c . The correlation functions were obtained from quenched calculations with Clover fermions on large isotropic lattices of the size (24 - 64) 3 x 16. We compare the resulting pole masses with the ones obtained from standard 2-exponential fits of spatial and temporal correlation functions at finite temperature and in the vacuum. The deviation of the meson spectral functions from free spectral functions is examined above the critical temperature. (orig.)

Meson spectral functions at finite temperature

International Nuclear Information System (INIS)

Wetzorke, I.; Karsch, F.; Laermann, E.; Petreczky, P.; Stickan, S.

2002-01-01

The Maximum Entropy Method provides a Bayesian approach to reconstruct the spectral functions from discrete points in Euclidean time. The applicability of the approach at finite temperature is probed with the thermal meson correlation function. Furthermore the influence of fuzzing/smearing techniques on the spectral shape is investigated. We present first results for meson spectral functions at several temperatures below and above T c . The correlation functions were obtained from quenched calculations with Clover fermions on large isotropic lattices of the size (24 - 64) 3 x 16. We compare the resulting pole masses with the ones obtained from standard 2-exponential fits of spatial and temporal correlation functions at finite temperature and in the vacuum. The deviation of the meson spectral functions from free spectral functions is examined above the critical temperature

Meson spectral functions at finite temperature

Energy Technology Data Exchange (ETDEWEB)

Wetzorke, I.; Karsch, F.; Laermann, E.; Petreczky, P.; Stickan, S

2002-03-01

The Maximum Entropy Method provides a Bayesian approach to reconstruct the spectral functions from discrete points in Euclidean time. The applicability of the approach at finite temperature is probed with the thermal meson correlation function. Furthermore the influence of fuzzing/smearing techniques on the spectral shape is investigated. We present first results for meson spectral functions at several temperatures below and above T{sub c}. The correlation functions were obtained from quenched calculations with Clover fermions on large isotropic lattices of the size (24 - 64){sup 3} x 16. We compare the resulting pole masses with the ones obtained from standard 2-exponential fits of spatial and temporal correlation functions at finite temperature and in the vacuum. The deviation of the meson spectral functions from free spectral functions is examined above the critical temperature.

Meson spectral functions at finite temperature

Energy Technology Data Exchange (ETDEWEB)

Wetzorke, I.; Karsch, F.; Laermann, E.; Petreczky, P.; Stickan, S. [Bielefeld Univ. (Germany). Fakultaet fuer Physik

2001-10-01

The Maximum Entropy Method provides a Bayesian approach to reconstruct the spectral functions from discrete points in Euclidean time. The applicability of the approach at finite temperature is probed with the thermal meson correlation function. Furthermore the influence of fuzzing/smearing techniques on the spectral shape is investigated. We present first results for meson spectral functions at several temperatures below and above T{sub c}. The correlation functions were obtained from quenched calculations with Clover fermions on large isotropic lattices of the size (24 - 64){sup 3} x 16. We compare the resulting pole masses with the ones obtained from standard 2-exponential fits of spatial and temporal correlation functions at finite temperature and in the vacuum. The deviation of the meson spectral functions from free spectral functions is examined above the critical temperature. (orig.)

The development of a modified spectral ripple test.

Science.gov (United States)

Aronoff, Justin M; Landsberger, David M

2013-08-01

Poor spectral resolution can be a limiting factor for hearing impaired listeners, particularly for complex listening tasks such as speech understanding in noise. Spectral ripple tests are commonly used to measure spectral resolution, but these tests contain a number of potential confounds that can make interpretation of the results difficult. To measure spectral resolution while avoiding those confounds, a modified spectral ripple test with dynamically changing ripples was created, referred to as the spectral-temporally modulated ripple test (SMRT). This paper describes the SMRT and provides evidence that it is sensitive to changes in spectral resolution.

DISK EVOLUTION IN THE THREE NEARBY STAR-FORMING REGIONS OF TAURUS, CHAMAELEON, AND OPHIUCHUS

International Nuclear Information System (INIS)

Furlan, E.; Watson, Dan M.; McClure, M. K.

2009-01-01

We analyze samples of Spitzer Infrared Spectrograph spectra of T Tauri stars in the Ophiuchus, Taurus, and Chamaeleon I star-forming regions, whose median ages lie in the <1-2 Myr range. The median mid-infrared spectra of objects in these three regions are similar in shape, suggesting, on average, similar disk structures. When normalized to the same stellar luminosity, the medians follow each other closely, implying comparable mid-infrared excess emission from the circumstellar disks. We use the spectral index between 13 and 31 μm and the equivalent width of the 10 μm silicate emission feature to identify objects whose disk configuration departs from that of a continuous, optically thick accretion disk. Transitional disks, whose steep 13-31 μm spectral slope and near-IR flux deficit reveal inner disk clearing, occur with about the same frequency of a few percent in all three regions. Objects with unusually large 10 μm equivalent widths are more common (20%-30%); they could reveal the presence of disk gaps filled with optically thin dust. Based on their medians and fraction of evolved disks, T Tauri stars in Taurus and Chamaeleon I are very alike. Disk evolution sets in early, since already the youngest region, the Ophiuchus core (L1688), has more settled disks with larger grains. Our results indicate that protoplanetary disks show clear signs of dust evolution at an age of a few Myr, even as early as ∼1 Myr, but age is not the only factor determining the degree of evolution during the first few million years of a disk's lifetime.

Herschel Studies of the Evolution and Environs of Young Stars in the DIGIT, WISH, and FOOSH Programs

Science.gov (United States)

Green, Joel D.; DIGIT OT Key Project Team; WISH GT Key Project Team; FOOSH OT1 Team

2012-01-01

The Herschel Space Observatory has enabled us to probe the physical conditions of outer disks, envelopes, and outflows of young stellar objects, including embedded objects, Herbig Ae/Be disks, and T Tauri disks. We will report on results from three projects, DIGIT, WISH, and FOOSH. The DIGIT (Dust, Ice, and Gas in Time) program (PI: Neal Evans) utilizes the full spectral range of the PACS instrument to explore simultaneously the solid and gas-phase chemistry around sources in all of these stages. WISH (Water in Star Forming Regions with Herschel, PI Ewine van Dishoeck) focuses on observations of key lines with HIFI and line scans of selected spectral regions with PACS. FOOSH (FU Orionis Objects Surveyed with Herschel, PI Joel Green) studies FU Orionis objects with full range PACS and SPIRE scans. DIGIT includes examples of low luminosity protostars, while FOOSH studies the high luminosity objects during outburst states. Rotational ladders of highly excited CO and OH emission are detected in both disks and protostars. The highly excited lines are more commonly seen in the embedded phases, where there appear to be two temperature components. Intriguingly, water is frequently detected in spectra of embedded sources, but not in the disk spectra. In addition to gas features, we explore the extent of the newly detected 69 um forsterite dust feature in both T Tauri and Herbig Ae/Be stars. When analyzed along with the Spitzer-detected dust features, these provide constraints on a population of colder crystalline material. We will present some models of individual sources, as well as some broad statistics of the emission from these stages of star and planet formation.

A statistical spectropolarimetric study of Herbig Ae/Be stars

Science.gov (United States)

Ababakr, K. M.; Oudmaijer, R. D.; Vink, J. S.

2017-11-01

We present H α linear spectropolarimetry of a large sample of Herbig Ae/Be stars. Together with newly obtained data for 17 objects, the sample contains 56 objects, the largest such sample to date. A change in linear polarization across the H α line is detected in 42 (75 per cent) objects, which confirms the previous finding that the circumstellar environment around these stars on small spatial scales has an asymmetric structure, which is typically identified with a disc. A second outcome of this research is that we confirm that Herbig Ae stars are similar to T Tauri stars in displaying a line polarization effect, while depolarization is more common among Herbig Be stars. This finding had been suggested previously to indicate that Herbig Ae stars form in the same manner than T Tauri stars through magnetospheric accretion. It appears that the transition between these two differing polarization line effects occurs around the B7-B8 spectral type. This would in turn not only suggest that Herbig Ae stars accrete in a similar fashion as lower mass stars, but also that this accretion mechanism switches to a different type of accretion for Herbig Be stars. We report that the magnitude of the line effect caused by electron scattering close to the stars does not exceed 2 per cent. Only a very weak correlation is found between the magnitude of the line effect and the spectral type or the strength of the H α line. This indicates that the detection of a line effect only relies on the geometry of the line-forming region and the geometry of the scattering electrons.

Structure Determination of Mycobacterium tuberculosis Serine Protease Hip1 (Rv2224c)

Energy Technology Data Exchange (ETDEWEB)

Naffin-Olivos, Jacqueline L.; Daab, Andrew; White, Andre; Goldfarb, Nathan E.; Milne, Amy C.; Liu, Dali; Baikovitz, Jacqueline; Dunn, Ben M.; Rengarajan, Jyothi; Petsko, Gregory A.; Ringe, Dagmar

2017-04-07

The Mycobacterium tuberculosis (Mtb) serine protease Hip1 (hydrolase important for pathogenesis; Rv2224c) promotes tuberculosis (TB) pathogenesis by impairing host immune responses through proteolysis of a protein substrate, Mtb GroEL2. The cell surface localization of Hip1 and its immunomodulatory functions make Hip1 a good drug target for new adjunctive immune therapies for TB. Here, we report the crystal structure of Hip1 to a resolution of 2.6 Å and the kinetic studies of the enzyme against model substrates and the protein GroEL2. The structure shows a two-domain protein, one of which contains the catalytic residues that are the signature of a serine protease. Surprisingly, a threonine is located within the active site close enough to hydrogen bond with the catalytic residues Asp463 and His490. Mutation of this residue, Thr466, to alanine established its importance for function. Our studies provide insights into the structure of a member of a novel family of proteases. Knowledge of the Hip1 structure will aid in designing inhibitors that could block Hip1 activity

Comparing auditory filter bandwidths, spectral ripple modulation detection, spectral ripple discrimination, and speech recognition: Normal and impaired hearing.

Science.gov (United States)

Davies-Venn, Evelyn; Nelson, Peggy; Souza, Pamela

2015-07-01

Some listeners with hearing loss show poor speech recognition scores in spite of using amplification that optimizes audibility. Beyond audibility, studies have suggested that suprathreshold abilities such as spectral and temporal processing may explain differences in amplified speech recognition scores. A variety of different methods has been used to measure spectral processing. However, the relationship between spectral processing and speech recognition is still inconclusive. This study evaluated the relationship between spectral processing and speech recognition in listeners with normal hearing and with hearing loss. Narrowband spectral resolution was assessed using auditory filter bandwidths estimated from simultaneous notched-noise masking. Broadband spectral processing was measured using the spectral ripple discrimination (SRD) task and the spectral ripple depth detection (SMD) task. Three different measures were used to assess unamplified and amplified speech recognition in quiet and noise. Stepwise multiple linear regression revealed that SMD at 2.0 cycles per octave (cpo) significantly predicted speech scores for amplified and unamplified speech in quiet and noise. Commonality analyses revealed that SMD at 2.0 cpo combined with SRD and equivalent rectangular bandwidth measures to explain most of the variance captured by the regression model. Results suggest that SMD and SRD may be promising clinical tools for diagnostic evaluation and predicting amplification outcomes.

Comparing auditory filter bandwidths, spectral ripple modulation detection, spectral ripple discrimination, and speech recognition: Normal and impaired hearinga)

Science.gov (United States)

Davies-Venn, Evelyn; Nelson, Peggy; Souza, Pamela

2015-01-01

Some listeners with hearing loss show poor speech recognition scores in spite of using amplification that optimizes audibility. Beyond audibility, studies have suggested that suprathreshold abilities such as spectral and temporal processing may explain differences in amplified speech recognition scores. A variety of different methods has been used to measure spectral processing. However, the relationship between spectral processing and speech recognition is still inconclusive. This study evaluated the relationship between spectral processing and speech recognition in listeners with normal hearing and with hearing loss. Narrowband spectral resolution was assessed using auditory filter bandwidths estimated from simultaneous notched-noise masking. Broadband spectral processing was measured using the spectral ripple discrimination (SRD) task and the spectral ripple depth detection (SMD) task. Three different measures were used to assess unamplified and amplified speech recognition in quiet and noise. Stepwise multiple linear regression revealed that SMD at 2.0 cycles per octave (cpo) significantly predicted speech scores for amplified and unamplified speech in quiet and noise. Commonality analyses revealed that SMD at 2.0 cpo combined with SRD and equivalent rectangular bandwidth measures to explain most of the variance captured by the regression model. Results suggest that SMD and SRD may be promising clinical tools for diagnostic evaluation and predicting amplification outcomes. PMID:26233047

Spectral properties of generalized eigenparameter dependent ...

African Journals Online (AJOL)

Jost function, spectrum, the spectral singularities, and the properties of the principal vectors corresponding to the spectral singularities of L, if. ∞Σn=1 n(∣1 - an∣ + ∣bnl) < ∞. Mathematics Subject Classication (2010): 34L05, 34L40, 39A70, 47A10, 47A75. Key words: Discrete equations, eigenparameter, spectral analysis, ...

Planck 2013 results. IX. HFI spectral response

CERN Document Server

Ade, P A R; Armitage-Caplan, C; Arnaud, M; Ashdown, M; Atrio-Barandela, F; Aumont, J; Baccigalupi, C; Banday, A J; Barreiro, R B; Battaner, E; Benabed, K; Benoît, A; Benoit-Lévy, A; Bernard, J -P; Bersanelli, M; Bielewicz, P; Bobin, J; Bock, J J; Bond, J R; Borrill, J; Bouchet, F R; Boulanger, F; Bridges, M; Bucher, M; Burigana, C; Cardoso, J -F; Catalano, A; Challinor, A; Chamballu, A; Chary, R -R; Chen, X; Chiang, L -Y; Chiang, H C; Christensen, P R; Church, S; Clements, D L; Colombi, S; Colombo, L P L; Combet, C; Comis, B; Couchot, F; Coulais, A; Crill, B P; Curto, A; Cuttaia, F; Danese, L; Davies, R D; de Bernardis, P; de Rosa, A; de Zotti, G; Delabrouille, J; Delouis, J -M; Désert, F -X; Dickinson, C; Diego, J M; Dole, H; Donzelli, S; Doré, O; Douspis, M; Dupac, X; Efstathiou, G; Enßlin, T A; Eriksen, H K; Falgarone, E; Finelli, F; Forni, O; Frailis, M; Franceschi, E; Galeotta, S; Ganga, K; Giard, M; Giraud-Héraud, Y; González-Nuevo, J; Górski, K M; Gratton, S; Gregorio, A; Gruppuso, A; Hansen, F K; Hanson, D; Harrison, D; Henrot-Versillé, S; Hernández-Monteagudo, C; Herranz, D; Hildebrandt, S R; Hivon, E; Hobson, M; Holmes, W A; Hornstrup, A; Hovest, W; Huffenberger, K M; Hurier, G; Jaffe, T R; Jaffe, A H; Jones, W C; Juvela, M; Keihänen, E; Keskitalo, R; Kisner, T S; Kneissl, R; Knoche, J; Knox, L; Kunz, M; Kurki-Suonio, H; Lagache, G; Lamarre, J -M; Lasenby, A; Laureijs, R J; Lawrence, C R; Leahy, J P; Leonardi, R; Leroy, C; Lesgourgues, J; Liguori, M; Lilje, P B; Linden-Vørnle, M; López-Caniego, M; Lubin, P M; Macías-Pérez, J F; Maffei, B; Mandolesi, N; Maris, M; Marshall, D J; Martin, P G; Martínez-González, E; Masi, S; Matarrese, S; Matthai, F; Mazzotta, P; McGehee, P; Melchiorri, A; Mendes, L; Mennella, A; Migliaccio, M; Mitra, S; Miville-Deschênes, M -A; Moneti, A; Montier, L; Morgante, G; Mortlock, D; Munshi, D; Murphy, J A; Naselsky, P; Nati, F; Natoli, P; Netterfield, C B; Nørgaard-Nielsen, H U; North, C; Noviello, F; Novikov, D; Novikov, I; Osborne, S; Oxborrow, C A; Paci, F; Pagano, L; Pajot, F; Paoletti, D; Pasian, F; Patanchon, G; Perdereau, O; Perotto, L; Perrotta, F; Piacentini, F; Piat, M; Pierpaoli, E; Pietrobon, D; Plaszczynski, S; Pointecouteau, E; Polenta, G; Ponthieu, N; Popa, L; Poutanen, T; Pratt, G W; Prézeau, G; Prunet, S; Puget, J -L; Rachen, J P; Reinecke, M; Remazeilles, M; Renault, C; Ricciardi, S; Riller, T; Ristorcelli, I; Rocha, G; Rosset, C; Roudier, G; Rusholme, B; Santos, D; Savini, G; Shellard, E P S; Spencer, L D; Starck, J -L; Stolyarov, V; Stompor, R; Sudiwala, R; Sureau, F; Sutton, D; Suur-Uski, A -S; Sygnet, J -F; Tauber, J A; Tavagnacco, D; Terenzi, L; Tomasi, M; Tristram, M; Tucci, M; Umana, G; Valenziano, L; Valiviita, J; Van Tent, B; Vielva, P; Villa, F; Vittorio, N; Wade, L A; Wandelt, B D; Yvon, D; Zacchei, A; Zonca, A

2014-01-01

The Planck High Frequency Instrument (HFI) spectral response was determined through a series of ground based tests conducted with the HFI focal plane in a cryogenic environment prior to launch. The main goal of the spectral transmission tests was to measure the relative spectral response (including out-of-band signal rejection) of all HFI detectors. This was determined by measuring the output of a continuously scanned Fourier transform spectrometer coupled with all HFI detectors. As there is no on-board spectrometer within HFI, the ground-based spectral response experiments provide the definitive data set for the relative spectral calibration of the HFI. The spectral response of the HFI is used in Planck data analysis and component separation, this includes extraction of CO emission observed within Planck bands, dust emission, Sunyaev-Zeldovich sources, and intensity to polarization leakage. The HFI spectral response data have also been used to provide unit conversion and colour correction analysis tools. Ver...

CRISS power spectral density

International Nuclear Information System (INIS)

Vaeth, W.

1979-04-01

The correlation of signal components at different frequencies like higher harmonics cannot be detected by a normal power spectral density measurement, since this technique correlates only components at the same frequency. This paper describes a special method for measuring the correlation of two signal components at different frequencies: the CRISS power spectral density. From this new function in frequency analysis, the correlation of two components can be determined quantitatively either they stem from one signal or from two diverse signals. The principle of the method, suitable for the higher harmonics of a signal as well as for any other frequency combinations is shown for the digital frequency analysis technique. Two examples of CRISS power spectral densities demonstrates the operation of the new method. (orig.) [de

Bacteria Biomass and Chlorophyll-a depth profiles from bottle casts off the western Antarctic Peninsula from the R/V LAURENCE M. GOULD from 23 April 2001 to 01 September 2001 (NODC Accession 0000820)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Bacteria and Chlorophyll data were collected from bottle cast of the western Antarctic peninsula from the R/V Laurence M. Gould. Data were collected by the...

Onboard spectral imager data processor

Science.gov (United States)

Otten, Leonard J.; Meigs, Andrew D.; Franklin, Abraham J.; Sears, Robert D.; Robison, Mark W.; Rafert, J. Bruce; Fronterhouse, Donald C.; Grotbeck, Ronald L.

1999-10-01

Previous papers have described the concept behind the MightySat II.1 program, the satellite's Fourier Transform imaging spectrometer's optical design, the design for the spectral imaging payload, and its initial qualification testing. This paper discusses the on board data processing designed to reduce the amount of downloaded data by an order of magnitude and provide a demonstration of a smart spaceborne spectral imaging sensor. Two custom components, a spectral imager interface 6U VME card that moves data at over 30 MByte/sec, and four TI C-40 processors mounted to a second 6U VME and daughter card, are used to adapt the sensor to the spacecraft and provide the necessary high speed processing. A system architecture that offers both on board real time image processing and high-speed post data collection analysis of the spectral data has been developed. In addition to the on board processing of the raw data into a usable spectral data volume, one feature extraction technique has been incorporated. This algorithm operates on the basic interferometric data. The algorithm is integrated within the data compression process to search for uploadable feature descriptions.

Using GIS servers and interactive maps in spectral data sharing and administration: Case study of Ahvaz Spectral Geodatabase Platform (ASGP)

Science.gov (United States)

Karami, Mojtaba; Rangzan, Kazem; Saberi, Azim

2013-10-01

With emergence of air-borne and space-borne hyperspectral sensors, spectroscopic measurements are gaining more importance in remote sensing. Therefore, the number of available spectral reference data is constantly increasing. This rapid increase often exhibits a poor data management, which leads to ultimate isolation of data on disk storages. Spectral data without precise description of the target, methods, environment, and sampling geometry cannot be used by other researchers. Moreover, existing spectral data (in case it accompanied with good documentation) become virtually invisible or unreachable for researchers. Providing documentation and a data-sharing framework for spectral data, in which researchers are able to search for or share spectral data and documentation, would definitely improve the data lifetime. Relational Database Management Systems (RDBMS) are main candidates for spectral data management and their efficiency is proven by many studies and applications to date. In this study, a new approach to spectral data administration is presented based on spatial identity of spectral samples. This method benefits from scalability and performance of RDBMS for storage of spectral data, but uses GIS servers to provide users with interactive maps as an interface to the system. The spectral files, photographs and descriptive data are considered as belongings of a geospatial object. A spectral processing unit is responsible for evaluation of metadata quality and performing routine spectral processing tasks for newly-added data. As a result, by using internet browser software the users would be able to visually examine availability of data and/or search for data based on descriptive attributes associated to it. The proposed system is scalable and besides giving the users good sense of what data are available in the database, it facilitates participation of spectral reference data in producing geoinformation.

Comparison of mouse, guinea pig and rabbit models for evaluation of plague subunit vaccine F1+rV270.

Science.gov (United States)

Qi, Zhizhen; Zhou, Lei; Zhang, Qingwen; Ren, Lingling; Dai, Ruixia; Wu, Benchuan; Wang, Tang; Zhu, Ziwen; Yang, Yonghai; Cui, Baizhong; Wang, Zuyun; Wang, Hu; Qiu, Yefeng; Guo, Zhaobiao; Yang, Ruifu; Wang, Xiaoyi

2010-02-10

In this study, a new subunit vaccine that comprised native F1 and recombinant rV270 was evaluated for protective efficacy using mouse, guinea pig and rabbit models in comparison with the live attenuated vaccine EV76. Complete protection against challenging with 10(6) colony-forming units (CFU) of virulent Yersinia pestis strain 141 was observed for mice immunized with the subunit vaccines and EV76 vaccine. In contrast, the subunit vaccine recipes VII (F1-20 microg+rV270-10 microg) and IX (F1-40 microg+rV270-20 microg) and EV76 vaccine provided 86%, 79% and 93% protection against the same level of challenge in guinea pigs and 100%, 83% and 100% protection in rabbits, respectively. The immunized mice with the vaccines had significantly higher IgG titres than the guinea pigs and rabbits, and the immunized guinea pigs developed significantly higher IgG titres than the rabbits, but the anti-F1 response in guinea pigs was more variable than in the mice and rabbits, indicating that guinea pig is not an ideal model for evaluating protective efficacy of plague subunit vaccine, instead the rabbits could be used as an alternative model. All the immunized animals with EV76 developed a negligible IgG titre to rV270 antigen. Furthermore, analysis of IgG subclasses in the immunized animals showed a strong response for IgG1, whereas those receiving EV76 immunization demonstrated predominant production of IgG1 and IgG2a isotypes. The subunit vaccine and EV76 vaccine are able to provide protection for animals against Y. pestis challenge, but the subunit vaccines have obvious advantages over EV76 in terms of safety of use. Copyright (c) 2009 Elsevier Ltd. All rights reserved.

Precise Multi-Spectral Dermatological Imaging

DEFF Research Database (Denmark)

Gomez, David Delgado; Carstensen, Jens Michael; Ersbøll, Bjarne Kjær

2004-01-01

In this work, an integrated imaging system to obtain accurate and reproducible multi-spectral dermatological images is proposed. The system is made up of an integrating sphere, light emitting diodes and a generic monochromatic camera. The system can collect up to 10 different spectral bands....... These spectral bands vary from ultraviolet to near infrared. The welldefined and diffuse illumination of the optically closed scene aims to avoid shadows and specular reflections. Furthermore, the system has been developed to guarantee the reproducibility of the collected images. This allows for comparative...

NARROW Na AND K ABSORPTION LINES TOWARD T TAURI STARS: TRACING THE ATOMIC ENVELOPE OF MOLECULAR CLOUDS

Energy Technology Data Exchange (ETDEWEB)

Pascucci, I.; Simon, M. N. [Lunar and Planetary Laboratory, The University of Arizona, Tucson, AZ 85721 (United States); Edwards, S. [Five College Astronomy Department, Smith College, Northampton, MA 01063 (United States); Heyer, M. [Department of Astronomy, University of Massachusetts, Amherst, MA 01003-9305 (United States); Rigliaco, E. [Institute for Astronomy, ETH Zurich, Wolfgang-Pauli-Strasse 27, CH-8093 Zurich (Switzerland); Hillenbrand, L. [Department of Astronomy, California Institute of Technology, Pasadena, CA 91125 (United States); Gorti, U.; Hollenbach, D., E-mail: pascucci@lpl.arizona.edu [SETI Institute, Mountain View, CA 94043 (United States)

2015-11-20

We present a detailed analysis of narrow Na i and K i absorption resonance lines toward nearly 40 T Tauri stars in Taurus with the goal of clarifying their origin. The Na i λ5889.95 line is detected toward all but one source, while the weaker K i λ7698.96 line is detected in about two-thirds of the sample. The similarity in their peak centroids and the significant positive correlation between their equivalent widths demonstrate that these transitions trace the same atomic gas. The absorption lines are present toward both disk and diskless young stellar objects, which excludes cold gas within the circumstellar disk as the absorbing material. A comparison of Na i and CO detections and peak centroids demonstrates that the atomic gas and molecular gas are not co-located, the atomic gas being more extended than the molecular gas. The width of the atomic lines corroborates this finding and points to atomic gas about an order of magnitude warmer than the molecular gas. The distribution of Na i radial velocities shows a clear spatial gradient along the length of the Taurus molecular cloud filaments. This suggests that absorption is associated with the Taurus molecular cloud. Assuming that the gradient is due to cloud rotation, the rotation of the atomic gas is consistent with differential galactic rotation, whereas the rotation of the molecular gas, although with the same rotation axis, is retrograde. Our analysis shows that narrow Na i and K i absorption resonance lines are useful tracers of the atomic envelope of molecular clouds. In line with recent findings from giant molecular clouds, our results demonstrate that the velocity fields of the atomic and molecular gas are misaligned. The angular momentum of a molecular cloud is not simply inherited from the rotating Galactic disk from which it formed but may be redistributed by cloud–cloud interactions.

NARROW Na AND K ABSORPTION LINES TOWARD T TAURI STARS: TRACING THE ATOMIC ENVELOPE OF MOLECULAR CLOUDS

International Nuclear Information System (INIS)

Pascucci, I.; Simon, M. N.; Edwards, S.; Heyer, M.; Rigliaco, E.; Hillenbrand, L.; Gorti, U.; Hollenbach, D.

2015-01-01

We present a detailed analysis of narrow Na i and K i absorption resonance lines toward nearly 40 T Tauri stars in Taurus with the goal of clarifying their origin. The Na i λ5889.95 line is detected toward all but one source, while the weaker K i λ7698.96 line is detected in about two-thirds of the sample. The similarity in their peak centroids and the significant positive correlation between their equivalent widths demonstrate that these transitions trace the same atomic gas. The absorption lines are present toward both disk and diskless young stellar objects, which excludes cold gas within the circumstellar disk as the absorbing material. A comparison of Na i and CO detections and peak centroids demonstrates that the atomic gas and molecular gas are not co-located, the atomic gas being more extended than the molecular gas. The width of the atomic lines corroborates this finding and points to atomic gas about an order of magnitude warmer than the molecular gas. The distribution of Na i radial velocities shows a clear spatial gradient along the length of the Taurus molecular cloud filaments. This suggests that absorption is associated with the Taurus molecular cloud. Assuming that the gradient is due to cloud rotation, the rotation of the atomic gas is consistent with differential galactic rotation, whereas the rotation of the molecular gas, although with the same rotation axis, is retrograde. Our analysis shows that narrow Na i and K i absorption resonance lines are useful tracers of the atomic envelope of molecular clouds. In line with recent findings from giant molecular clouds, our results demonstrate that the velocity fields of the atomic and molecular gas are misaligned. The angular momentum of a molecular cloud is not simply inherited from the rotating Galactic disk from which it formed but may be redistributed by cloud–cloud interactions

SPAM- SPECTRAL ANALYSIS MANAGER (UNIX VERSION)

Science.gov (United States)

Solomon, J. E.

1994-01-01

The Spectral Analysis Manager (SPAM) was developed to allow easy qualitative analysis of multi-dimensional imaging spectrometer data. Imaging spectrometers provide sufficient spectral sampling to define unique spectral signatures on a per pixel basis. Thus direct material identification becomes possible for geologic studies. SPAM provides a variety of capabilities for carrying out interactive analysis of the massive and complex datasets associated with multispectral remote sensing observations. In addition to normal image processing functions, SPAM provides multiple levels of on-line help, a flexible command interpretation, graceful error recovery, and a program structure which can be implemented in a variety of environments. SPAM was designed to be visually oriented and user friendly with the liberal employment of graphics for rapid and efficient exploratory analysis of imaging spectrometry data. SPAM provides functions to enable arithmetic manipulations of the data, such as normalization, linear mixing, band ratio discrimination, and low-pass filtering. SPAM can be used to examine the spectra of an individual pixel or the average spectra over a number of pixels. SPAM also supports image segmentation, fast spectral signature matching, spectral library usage, mixture analysis, and feature extraction. High speed spectral signature matching is performed by using a binary spectral encoding algorithm to separate and identify mineral components present in the scene. The same binary encoding allows automatic spectral clustering. Spectral data may be entered from a digitizing tablet, stored in a user library, compared to the master library containing mineral standards, and then displayed as a timesequence spectral movie. The output plots, histograms, and stretched histograms produced by SPAM can be sent to a lineprinter, stored as separate RGB disk files, or sent to a Quick Color Recorder. SPAM is written in C for interactive execution and is available for two different

Curvature Effect and the Spectral Softening Phenomenon Detected ...

Indian Academy of Sciences (India)

soft spectral evolution, indicating that this spectral softening is not a rare phenomenon .... of time, there exists a temporal steep decay phase accompanied by spectral softening. (d) In most cases, the temporal power law index α and the spectral.

Spectral properties of 441 radio pulsars

Science.gov (United States)

Jankowski, F.; van Straten, W.; Keane, E. F.; Bailes, M.; Barr, E. D.; Johnston, S.; Kerr, M.

2018-02-01

We present a study of the spectral properties of 441 pulsars observed with the Parkes radio telescope near the centre frequencies of 728, 1382 and 3100 MHz. The observations at 728 and 3100 MHz were conducted simultaneously using the dual-band 10-50 cm receiver. These high-sensitivity, multifrequency observations provide a systematic and uniform sample of pulsar flux densities. We combine our measurements with spectral data from the literature in order to derive the spectral properties of these pulsars. Using techniques from robust regression and information theory, we classify the observed spectra in an objective, robust and unbiased way into five morphological classes: simple or broken power law, power law with either low- or high-frequency cut-off and log-parabolic spectrum. While about 79 per cent of the pulsars that could be classified have simple power-law spectra, we find significant deviations in 73 pulsars, 35 of which have curved spectra, 25 with a spectral break and 10 with a low-frequency turn-over. We identify 11 gigahertz-peaked spectrum (GPS) pulsars, with 3 newly identified in this work and 8 confirmations of known GPS pulsars; 3 others show tentative evidence of GPS, but require further low-frequency measurements to support this classification. The weighted mean spectral index of all pulsars with simple power-law spectra is -1.60 ± 0.03. The observed spectral indices are well described by a shifted log-normal distribution. The strongest correlations of spectral index are with spin-down luminosity, magnetic field at the light-cylinder and spin-down rate. We also investigate the physical origin of the observed spectral features and determine emission altitudes for three pulsars.

Spectral emissivity of tungsten: analytic expressions for the 340-nm to 2.6-μm spectral region

International Nuclear Information System (INIS)

Pon, R.M.; Hessler, J.P.

1984-01-01

To correct emission spectra a standard radiance source is often used to determine the spectral responsivity of the detection system. In the near-UV, visible, and near-IR spectral regions the most common radiance standard is a tungsten strip lamp calibrated by a standards laboratory. For day-to-day experiments where slightly less accuracy is acceptable, a less expensive uncalibrated lamp is useful. In this case, the radiant temperature T/sub r/ of the lamp is measured with an optical pyrometer, generally at a single wavelength such as 650 nm, and the source spectral radiance L(λ) is calculated from L(λ) = tau(λ)epsilon(λ,T)L/sub B/(λ,T). The transmittance of the source is tau(λ), the spectral emissivity is epsilon(λ,T), and L/sub B/(λ,T) is the spectral distribution of blackbody radiation, Planck's radiation law. To obtain the true temperature T, Wien's approximation is employed. To conveniently calibrate a system, especially one which utilizes a microcomputer, it is advantageous to have analytic expressions for the spectral emissivity of tungsten. Although Larrabee has published such expressions, they are limited to the 450-800-nm spectral region. To obtain analytic expressions from 340 nm to 2.6 μm they have used the measurements of DeVos. Although DeVos's results differ by 2% from those of Larrabee, this difference is assumed to be acceptable

The Sturm-Liouville inverse spectral problem with boundary conditions depending on the spectral parameter

Directory of Open Access Journals (Sweden)

Cornelis van der Mee

2005-01-01

Full Text Available We present the complete version including proofs of the results announced in [van der Mee C., Pivovarchik V.: A Sturm-Liouville spectral problem with boundary conditions depending on the spectral parameter. Funct. Anal. Appl. 36 (2002, 315–317 [Funkts. Anal. Prilozh. 36 (2002, 74–77 (Russian

Profile nutrients data from bottle casts from the R/V Alpha Helix in the Bering Sea, Gulf of Alaska and Northeast Pacific from 16 August 1983 to 30 July 1989 (NODC Accession 0000252)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Profile nutrients and other data were collected from the R/V ALPHA HELIX from August 16, 1983 to July 30, 1989. Data were submitted by University of Alaska -...

Spectrally-engineered solar thermal photovoltaic devices

Science.gov (United States)

Lenert, Andrej; Bierman, David; Chan, Walker; Celanovic, Ivan; Soljacic, Marin; Wang, Evelyn N.; Nam, Young Suk; McEnaney, Kenneth; Kraemer, Daniel; Chen, Gang

2018-03-27

A solar thermal photovoltaic device, and method of forming same, includes a solar absorber and a spectrally selective emitter formed on either side of a thermally conductive substrate. The solar absorber is configured to absorb incident solar radiation. The solar absorber and the spectrally selective emitter are configured with an optimized emitter-to-absorber area ratio. The solar thermal photovoltaic device also includes a photovoltaic cell in thermal communication with the spectrally selective emitter. The spectrally selective emitter is configured to permit high emittance for energies above a bandgap of the photovoltaic cell and configured to permit low emittance for energies below the bandgap.

Spacetime Discontinuous Galerkin FEM: Spectral Response

International Nuclear Information System (INIS)

Abedi, R; Omidi, O; Clarke, P L

2014-01-01

Materials in nature demonstrate certain spectral shapes in terms of their material properties. Since successful experimental demonstrations in 2000, metamaterials have provided a means to engineer materials with desired spectral shapes for their material properties. Computational tools are employed in two different aspects for metamaterial modeling: 1. Mircoscale unit cell analysis to derive and possibly optimize material's spectral response; 2. macroscale to analyze their interaction with conventional material. We compare two different approaches of Time-Domain (TD) and Frequency Domain (FD) methods for metamaterial applications. Finally, we discuss advantages of the TD method of Spacetime Discontinuous Galerkin finite element method (FEM) for spectral analysis of metamaterials

Spectral quality requirements for effluent identification

Science.gov (United States)

Czerwinski, R. N.; Seeley, J. A.; Wack, E. C.

2005-11-01

We consider the problem of remotely identifying gaseous materials using passive sensing of long-wave infrared (LWIR) spectral features at hyperspectral resolution. Gaseous materials are distinguishable in the LWIR because of their unique spectral fingerprints. A sensor degraded in capability by noise or limited spectral resolution, however, may be unable to positively identify contaminants, especially if they are present in low concentrations or if the spectral library used for comparisons includes materials with similar spectral signatures. This paper will quantify the relative importance of these parameters and express the relationships between them in a functional form which can be used as a rule of thumb in sensor design or in assessing sensor capability for a specific task. This paper describes the simulation of remote sensing datacontaining a gas cloud.In each simulation, the spectra are degraded in spectral resolution and through the addition of noise to simulate spectra collected by sensors of varying design and capability. We form a trade space by systematically varying the number of sensor spectral channels and signal-to-noise ratio over a range of values. For each scenario, we evaluate the capability of the sensor for gas identification by computing the ratio of the F-statistic for the truth gas tothe same statistic computed over the rest of the library.The effect of the scope of the library is investigated as well, by computing statistics on the variability of the identification capability as the library composition is varied randomly.

Physical, chemical and biological CTD and bottle data from R/V Thomas G. Thompson cruise TN278 in eastern tropical North Pacific Ocean from March 19 to April 20, 2012 (NODC Accession 0109846)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This report contains data from R/V Thomas G. Thompson cruise TN278 to the eastern tropical north pacific oxygen deficient zone. The objective of the cruise was to...

Nutrients data from the R/V ALPHA HELIX and T.G. THOMPSON as part of the Inner Shelf Transfer and Recycling Project from 17 April 1987 to 21 July 1988 (NODC Accession 0000296)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Nitrate, nitrite, phosphate, silicate, and other data were collected from the R/V ALPHA HELIX and THOMAS G. THOMPSON from April 17, 1987 to July 21, 1988. Data were...

Information-efficient spectral imaging sensor

Science.gov (United States)

Sweatt, William C.; Gentry, Stephen M.; Boye, Clinton A.; Grotbeck, Carter L.; Stallard, Brian R.; Descour, Michael R.

2003-01-01

A programmable optical filter for use in multispectral and hyperspectral imaging. The filter splits the light collected by an optical telescope into two channels for each of the pixels in a row in a scanned image, one channel to handle the positive elements of a spectral basis filter and one for the negative elements of the spectral basis filter. Each channel for each pixel disperses its light into n spectral bins, with the light in each bin being attenuated in accordance with the value of the associated positive or negative element of the spectral basis vector. The spectral basis vector is constructed so that its positive elements emphasize the presence of a target and its negative elements emphasize the presence of the constituents of the background of the imaged scene. The attenuated light in the channels is re-imaged onto separate detectors for each pixel and then the signals from the detectors are combined to give an indication of the presence or not of the target in each pixel of the scanned scene. This system provides for a very efficient optical determination of the presence of the target, as opposed to the very data intensive data manipulations that are required in conventional hyperspectral imaging systems.

Spectral theory of linear operators and spectral systems in Banach algebras

CERN Document Server

Müller, Vladimir

2003-01-01

This book is dedicated to the spectral theory of linear operators on Banach spaces and of elements in Banach algebras. It presents a survey of results concerning various types of spectra, both of single and n-tuples of elements. Typical examples are the one-sided spectra, the approximate point, essential, local and Taylor spectrum, and their variants. The theory is presented in a unified, axiomatic and elementary way. Many results appear here for the first time in a monograph. The material is self-contained. Only a basic knowledge of functional analysis, topology, and complex analysis is assumed. The monograph should appeal both to students who would like to learn about spectral theory and to experts in the field. It can also serve as a reference book. The present second edition contains a number of new results, in particular, concerning orbits and their relations to the invariant subspace problem. This book is dedicated to the spectral theory of linear operators on Banach spaces and of elements in Banach alg...

Turbidity, SOLAR RADIATION - ATMOSPHERIC and other data from R.V. MADIDIHANG and SAMUDERA in the Malacca and Singapore Straits and East Indian Archipelago from 1977-03-01 to 1979-01-17 (NODC Accession 9700267)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Zooplankton, nutrients, and other data were collected from net and bottle casts in the Malacca and Singapore Straits from the R/V Madidihang and other platforms....

Developement of the method for realization of spectral irradiance scale featuring system of spectral comparisons

International Nuclear Information System (INIS)

Skerovic, V; Zarubica, V; Aleksic, M; Zekovic, L; Belca, I

2010-01-01

Realization of the scale of spectral responsivity of the detectors in the Directorate of Measures and Precious Metals (DMDM) is based on silicon detectors traceable to LNE-INM. In order to realize the unit of spectral irradiance in the laboratory for photometry and radiometry of the Bureau of Measures and Precious Metals, the new method based on the calibration of the spectroradiometer by comparison with standard detector has been established. The development of the method included realization of the System of Spectral Comparisons (SSC), together with the detector spectral responsivity calibrations by means of a primary spectrophotometric system. The linearity testing and stray light analysis were preformed to characterize the spectroradiometer. Measurement of aperture diameter and calibration of transimpedance amplifier were part of the overall experiment. In this paper, the developed method is presented and measurement results with the associated measurement uncertainty budget are shown.

Developement of the method for realization of spectral irradiance scale featuring system of spectral comparisons

Energy Technology Data Exchange (ETDEWEB)

Skerovic, V; Zarubica, V; Aleksic, M [Directorate of measures and precious metals, Optical radiation Metrology department, Mike Alasa 14, 11000 Belgrade (Serbia); Zekovic, L; Belca, I, E-mail: vladanskerovic@dmdm.r [Faculty of Physics, Department for Applied physics and metrology, Studentski trg 12-16, 11000 Belgrade (Serbia)

2010-10-15

Realization of the scale of spectral responsivity of the detectors in the Directorate of Measures and Precious Metals (DMDM) is based on silicon detectors traceable to LNE-INM. In order to realize the unit of spectral irradiance in the laboratory for photometry and radiometry of the Bureau of Measures and Precious Metals, the new method based on the calibration of the spectroradiometer by comparison with standard detector has been established. The development of the method included realization of the System of Spectral Comparisons (SSC), together with the detector spectral responsivity calibrations by means of a primary spectrophotometric system. The linearity testing and stray light analysis were preformed to characterize the spectroradiometer. Measurement of aperture diameter and calibration of transimpedance amplifier were part of the overall experiment. In this paper, the developed method is presented and measurement results with the associated measurement uncertainty budget are shown.

Cochlear implant users' spectral ripple resolution.

Science.gov (United States)

Jeon, Eun Kyung; Turner, Christopher W; Karsten, Sue A; Henry, Belinda A; Gantz, Bruce J

2015-10-01

This study revisits the issue of the spectral ripple resolution abilities of cochlear implant (CI) users. The spectral ripple resolution of recently implanted CI recipients (implanted during the last 10 years) were compared to those of CI recipients implanted 15 to 20 years ago, as well as those of normal-hearing and hearing-impaired listeners from previously published data from Henry, Turner, and Behrens [J. Acoust. Soc. Am. 118, 1111-1121 (2005)]. More recently, implanted CI recipients showed significantly better spectral ripple resolution. There is no significant difference in spectral ripple resolution for these recently implanted subjects compared to hearing-impaired (acoustic) listeners. The more recently implanted CI users had significantly better pre-operative speech perception than previously reported CI users. These better pre-operative speech perception scores in CI users from the current study may be related to better performance on the spectral ripple discrimination task; however, other possible factors such as improvements in internal and external devices cannot be excluded.

Spectral dimension in causal set quantum gravity

International Nuclear Information System (INIS)

Eichhorn, Astrid; Mizera, Sebastian

2014-01-01

We evaluate the spectral dimension in causal set quantum gravity by simulating random walks on causal sets. In contrast to other approaches to quantum gravity, we find an increasing spectral dimension at small scales. This observation can be connected to the nonlocality of causal set theory that is deeply rooted in its fundamentally Lorentzian nature. Based on its large-scale behaviour, we conjecture that the spectral dimension can serve as a tool to distinguish causal sets that approximate manifolds from those that do not. As a new tool to probe quantum spacetime in different quantum gravity approaches, we introduce a novel dimensional estimator, the causal spectral dimension, based on the meeting probability of two random walkers, which respect the causal structure of the quantum spacetime. We discuss a causal-set example, where the spectral dimension and the causal spectral dimension differ, due to the existence of a preferred foliation. (paper)

A Simple Spectral Observer

Directory of Open Access Journals (Sweden)

Lizeth Torres

2018-05-01

Full Text Available The principal aim of a spectral observer is twofold: the reconstruction of a signal of time via state estimation and the decomposition of such a signal into the frequencies that make it up. A spectral observer can be catalogued as an online algorithm for time-frequency analysis because is a method that can compute on the fly the Fourier transform (FT of a signal, without having the entire signal available from the start. In this regard, this paper presents a novel spectral observer with an adjustable constant gain for reconstructing a given signal by means of the recursive identification of the coefficients of a Fourier series. The reconstruction or estimation of a signal in the context of this work means to find the coefficients of a linear combination of sines a cosines that fits a signal such that it can be reproduced. The design procedure of the spectral observer is presented along with the following applications: (1 the reconstruction of a simple periodical signal, (2 the approximation of both a square and a triangular signal, (3 the edge detection in signals by using the Fourier coefficients, (4 the fitting of the historical Bitcoin market data from 1 December 2014 to 8 January 2018 and (5 the estimation of a input force acting upon a Duffing oscillator. To round out this paper, we present a detailed discussion about the results of the applications as well as a comparative analysis of the proposed spectral observer vis-à-vis the Short Time Fourier Transform (STFT, which is a well-known method for time-frequency analysis.

Spectral characterization of natural backgrounds

Science.gov (United States)

Winkelmann, Max

2017-10-01

As the distribution and use of hyperspectral sensors is constantly increasing, the exploitation of spectral features is a threat for camouflaged objects. To improve camouflage materials at first the spectral behavior of backgrounds has to be known to adjust and optimize the spectral reflectance of camouflage materials. In an international effort, the NATO CSO working group SCI-295 "Development of Methods for Measurements and Evaluation of Natural Background EO Signatures" is developing a method how this characterization of backgrounds has to be done. It is obvious that the spectral characterization of a background will be quite an effort. To compare and exchange data internationally the measurements will have to be done in a similar way. To test and further improve this method an international field trial has been performed in Storkow, Germany. In the following we present first impressions and lessons learned from this field campaign and describe the data that has been measured.

Substitution dynamical systems spectral analysis

CERN Document Server

Queffélec, Martine

2010-01-01

This volume mainly deals with the dynamics of finitely valued sequences, and more specifically, of sequences generated by substitutions and automata. Those sequences demonstrate fairly simple combinatorical and arithmetical properties and naturally appear in various domains. As the title suggests, the aim of the initial version of this book was the spectral study of the associated dynamical systems: the first chapters consisted in a detailed introduction to the mathematical notions involved, and the description of the spectral invariants followed in the closing chapters. This approach, combined with new material added to the new edition, results in a nearly self-contained book on the subject. New tools - which have also proven helpful in other contexts - had to be developed for this study. Moreover, its findings can be concretely applied, the method providing an algorithm to exhibit the spectral measures and the spectral multiplicity, as is demonstrated in several examples. Beyond this advanced analysis, many...

Camouflage in thermal IR: spectral design

Science.gov (United States)

Pohl, Anna; Fagerström, Jan; Kariis, Hans; Lindell, Roland; Hallberg, Tomas; Högström, Herman

2016-10-01

In this work a spectral designed coating from SPECTROGON is evaluated. Spectral design in this case means that the coating has a reflectivity equal to one at 3-5 and 8-12 microns were sensors operate and a much lower reflectivity in the other wave length regions. Three boxes are evaluated: one metallic, one black-body and one with a spectral designed surface, all with a 15 W radiator inside the box. It is shown that the box with the spectral designed surface can combine the two good characteristics of the other boxes: low signature from the metallic box and reasonable inside temperature from the black-body box. The measurements were verified with calculations using RadThermIR.

Temperature, salinity and currents data from CTD, ADCP and other instruments on the R/V F.G. Walton Smith in the Florida and Loop Currents, May 2007 to July 2008 (NODC Accession 0066847)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Oceanographic data were collected from a variety of sources during three cruises aboard the R/V Walton Smith (WS0714, cruise 1: May 29-June 14, 2007; WS0720, cruise...

Light distribution system comprising spectral conversion means

DEFF Research Database (Denmark)

2012-01-01

, longer wavelength,a spectral conversion characteristics of the spectral conversion fibre being essentially determined by the spectral absorption and emission properties of the photoluminescent agent, the amount of photo- luminescent agent,and the distribution of the photoluminescent agent in the spectral......System (200, 300) for the distribution of white light, having a supply side (201, 301, 401) and a delivery side (202, 302, 402), the system being configured for guiding light with a multitude of visible wavelengths in a propagation direction P from the supply side to the distribution side...... of providing a light distribution system and a method of correcting the spectral transmission characteristics of a light distribution system are disclosed....

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the Caribbean Ocean in support of the Integrated Global Ocean Services System (IGOSS) project for 1971-01-28 (NODC Accession 7600706)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

A HIGH-PRECISION NEAR-INFRARED SURVEY FOR RADIAL VELOCITY VARIABLE LOW-MASS STARS USING CSHELL AND A METHANE GAS CELL

Energy Technology Data Exchange (ETDEWEB)

Gagné, Jonathan [Carnegie Institution of Washington DTM, 5241 Broad Branch Road NW, Washington, DC 20015 (United States); Plavchan, Peter [Department of Physics, Missouri State University, 901 S National Ave, Springfield, MO 65897 (United States); Gao, Peter [Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125 (United States); Anglada-Escude, Guillem [School of Physics and Astronomy, Queen Mary University of London, 327 Mile End Rd, E1 4NS, London (United Kingdom); Furlan, Elise; Brinkworth, Carolyn; Ciardi, David R. [NASA Exoplanet Science Institute, California Institute of Technology, 770 S. Wilson Ave., Pasadena, CA 91125 (United States); Davison, Cassy; Henry, Todd J.; White, Russel [Department of Physics and Astronomy, Georgia State University, Atlanta, GA 30303 (United States); Tanner, Angelle [Mississippi State University, Department of Physics and Astronomy, Hilbun Hall, Starkville, MS 39762 (United States); Riedel, Adric R. [Division of Physics, Mathematics and Astronomy, California Institute of Technology, Pasadena, CA 91125 (United States); Latham, David; Johnson, John A. [Institute for Theory and Computation, Harvard-Smithsonian Center for Astrophysics, 60 Garden St., Cambridge, MA 02138 (United States); Bottom, Michael [Department of Astronomy, California Institute of Technology, Pasadena, CA 91125 (United States); Mills, Sean [Department of Astronomy and Astrophysics, University of Chicago, 5640 S. Ellis Ave, Chicago, IL 60637 (United States); Beichman, Chas [NASA Exoplanet Science Institute, California Institute of Technology, Pasadena, CA 91125 (United States); Wallace, Kent; Mennesson, Bertrand [Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr, Pasadena, CA 91125 (United States); Von Braun, Kaspar, E-mail: jgagne@carnegiescience.edu [Lowell Observatory, West Mars Hill Road, Flagstaff, AZ 86001 (United States); and others

2016-05-01

We present the results of a precise near-infrared (NIR) radial velocity (RV) survey of 32 low-mass stars with spectral types K2–M4 using CSHELL at the NASA InfraRed Telescope Facility in the K band with an isotopologue methane gas cell to achieve wavelength calibration and a novel, iterative RV extraction method. We surveyed 14 members of young (≈25–150 Myr) moving groups, the young field star ε Eridani, and 18 nearby (<25 pc) low-mass stars and achieved typical single-measurement precisions of 8–15 m s{sup −1}with a long-term stability of 15–50 m s{sup −1} over longer baselines. We obtain the best NIR RV constraints to date on 27 targets in our sample, 19 of which were never followed by high-precision RV surveys. Our results indicate that very active stars can display long-term RV variations as low as ∼25–50 m s{sup −1} at ≈2.3125 μ m, thus constraining the effect of jitter at these wavelengths. We provide the first multiwavelength confirmation of GJ 876 bc and independently retrieve orbital parameters consistent with previous studies. We recovered RV variabilities for HD 160934 AB and GJ 725 AB that are consistent with their known binary orbits, and nine other targets are candidate RV variables with a statistical significance of 3 σ –5 σ . Our method, combined with the new iSHELL spectrograph, will yield long-term RV precisions of ≲5 m s{sup −1} in the NIR, which will allow the detection of super-Earths near the habitable zone of mid-M dwarfs.

Parametric Explosion Spectral Model

Energy Technology Data Exchange (ETDEWEB)

Ford, S R; Walter, W R

2012-01-19

Small underground nuclear explosions need to be confidently detected, identified, and characterized in regions of the world where they have never before occurred. We develop a parametric model of the nuclear explosion seismic source spectrum derived from regional phases that is compatible with earthquake-based geometrical spreading and attenuation. Earthquake spectra are fit with a generalized version of the Brune spectrum, which is a three-parameter model that describes the long-period level, corner-frequency, and spectral slope at high-frequencies. Explosion spectra can be fit with similar spectral models whose parameters are then correlated with near-source geology and containment conditions. We observe a correlation of high gas-porosity (low-strength) with increased spectral slope. The relationship between the parametric equations and the geologic and containment conditions will assist in our physical understanding of the nuclear explosion source.

[Modeling and Simulation of Spectral Polarimetric BRDF].

Science.gov (United States)

Ling, Jin-jiang; Li, Gang; Zhang, Ren-bin; Tang, Qian; Ye, Qiu

2016-01-01

Under the conditions of the polarized light, The reflective surface of the object is affected by many factors, refractive index, surface roughness, and so the angle of incidence. For the rough surface in the different wavelengths of light exhibit different reflection characteristics of polarization, a spectral polarimetric BRDF based on Kirchhof theory is proposee. The spectral model of complex refraction index is combined with refraction index and extinction coefficient spectral model which were got by using the known complex refraction index at different value. Then get the spectral model of surface roughness derived from the classical surface roughness measuring method combined with the Fresnel reflection function. Take the spectral model of refraction index and roughness into the BRDF model, then the spectral polarimetirc BRDF model is proposed. Compare the simulation results of the refractive index varies with wavelength, roughness is constant, the refraction index and roughness both vary with wavelength and origin model with other papers, it shows that, the spectral polarimetric BRDF model can show the polarization characteristics of the surface accurately, and can provide a reliable basis for the application of polarization remote sensing, and other aspects of the classification of substances.

Characterization of XR-RV3 GafChromic{sup ®} films in standard laboratory and in clinical conditions and means to evaluate uncertainties and reduce errors

Energy Technology Data Exchange (ETDEWEB)

Farah, J., E-mail: jad.farah@irsn.fr; Clairand, I.; Huet, C. [External Dosimetry Department, Institut de Radioprotection et de Sûreté Nucléaire (IRSN), BP-17, 92260 Fontenay-aux-Roses (France); Trianni, A. [Medical Physics Department, Udine University Hospital S. Maria della Misericordia (AOUD), p.le S. Maria della Misericordia, 15, 33100 Udine (Italy); Ciraj-Bjelac, O. [Vinca Institute of Nuclear Sciences (VINCA), P.O. Box 522, 11001 Belgrade (Serbia); De Angelis, C. [Department of Technology and Health, Istituto Superiore di Sanità (ISS), Viale Regina Elena 299, 00161 Rome (Italy); Delle Canne, S. [Fatebenefratelli San Giovanni Calibita Hospital (FBF), UOC Medical Physics - Isola Tiberina, 00186 Rome (Italy); Hadid, L.; Waryn, M. J. [Radiology Department, Hôpital Jean Verdier (HJV), Avenue du 14 Juillet, 93140 Bondy Cedex (France); Jarvinen, H.; Siiskonen, T. [Radiation and Nuclear Safety Authority (STUK), P.O. Box 14, 00881 Helsinki (Finland); Negri, A. [Veneto Institute of Oncology (IOV), Via Gattamelata 64, 35124 Padova (Italy); Novák, L. [National Radiation Protection Institute (NRPI), Bartoškova 28, 140 00 Prague 4 (Czech Republic); Pinto, M. [Istituto Nazionale di Metrologia delle Radiazioni Ionizzanti (ENEA-INMRI), C.R. Casaccia, Via Anguillarese 301, I-00123 Santa Maria di Galeria (RM) (Italy); Knežević, Ž. [Ruđer Bošković Institute (RBI), Bijenička c. 54, 10000 Zagreb (Croatia)

2015-07-15

Purpose: To investigate the optimal use of XR-RV3 GafChromic{sup ®} films to assess patient skin dose in interventional radiology while addressing the means to reduce uncertainties in dose assessment. Methods: XR-Type R GafChromic films have been shown to represent the most efficient and suitable solution to determine patient skin dose in interventional procedures. As film dosimetry can be associated with high uncertainty, this paper presents the EURADOS WG 12 initiative to carry out a comprehensive study of film characteristics with a multisite approach. The considered sources of uncertainties include scanner, film, and fitting-related errors. The work focused on studying film behavior with clinical high-dose-rate pulsed beams (previously unavailable in the literature) together with reference standard laboratory beams. Results: First, the performance analysis of six different scanner models has shown that scan uniformity perpendicular to the lamp motion axis and that long term stability are the main sources of scanner-related uncertainties. These could induce errors of up to 7% on the film readings unless regularly checked and corrected. Typically, scan uniformity correction matrices and reading normalization to the scanner-specific and daily background reading should be done. In addition, the analysis on multiple film batches has shown that XR-RV3 films have generally good uniformity within one batch (<1.5%), require 24 h to stabilize after the irradiation and their response is roughly independent of dose rate (<5%). However, XR-RV3 films showed large variations (up to 15%) with radiation quality both in standard laboratory and in clinical conditions. As such, and prior to conducting patient skin dose measurements, it is mandatory to choose the appropriate calibration beam quality depending on the characteristics of the x-ray systems that will be used clinically. In addition, yellow side film irradiations should be preferentially used since they showed a lower

Spectral Line Shapes in Plasmas and Gases

International Nuclear Information System (INIS)

Oks, E.; Dalimier, D.; Stamm, R.; Stehle, CH.; Gonzalez, M.A.

2011-01-01

The subject of spectral line shapes (SLS), a.k.a. spectral line broadening, which embraces both shapes and shifts of spectral lines, is of both fundamental and practical importance. On the fundamental side, the study of the spectral line profiles reveals the underlying atomic and molecular interactions. On the practical side, the spectral line profiles are employed as powerful diagnostic tools for various media, such as neutral gases, technological gas discharges, magnetically confined plasmas for fusion, laser- and Z-pinch-produced plasmas (for fusion and other purposes), astrophysical plasmas (most importantly, solar plasmas), and planetary atmospheres. The research area covered by this special issue includes both the SLS dominated by various electric fields (including electron and ion micro fields in strongly ionized plasmas) and the SLS controlled by neutral particles. In the physical slang, the former is called plasma broadening while the latter is called neutral broadening (of course, the results of neutral broadening apply also to the spectral line broadening in neutral gases)

Identification of 2-aminothiazole-4-carboxylate derivatives active against Mycobacterium tuberculosis H37Rv and the beta-ketoacyl-ACP synthase mtFabH.

Directory of Open Access Journals (Sweden)

Qosay Al-Balas

Full Text Available BACKGROUND: Tuberculosis (TB is a disease which kills two million people every year and infects approximately over one-third of the world's population. The difficulty in managing tuberculosis is the prolonged treatment duration, the emergence of drug resistance and co-infection with HIV/AIDS. Tuberculosis control requires new drugs that act at novel drug targets to help combat resistant forms of Mycobacterium tuberculosis and reduce treatment duration. METHODOLOGY/PRINCIPAL FINDINGS: Our approach was to modify the naturally occurring and synthetically challenging antibiotic thiolactomycin (TLM to the more tractable 2-aminothiazole-4-carboxylate scaffold to generate compounds that mimic TLM's novel mode of action. We report here the identification of a series of compounds possessing excellent activity against M. tuberculosis H(37R(v and, dissociatively, against the beta-ketoacyl synthase enzyme mtFabH which is targeted by TLM. Specifically, methyl 2-amino-5-benzylthiazole-4-carboxylate was found to inhibit M. tuberculosis H(37R(v with an MIC of 0.06 microg/ml (240 nM, but showed no activity against mtFabH, whereas methyl 2-(2-bromoacetamido-5-(3-chlorophenylthiazole-4-carboxylate inhibited mtFabH with an IC(50 of 0.95+/-0.05 microg/ml (2.43+/-0.13 microM but was not active against the whole cell organism. CONCLUSIONS/SIGNIFICANCE: These findings clearly identify the 2-aminothiazole-4-carboxylate scaffold as a promising new template towards the discovery of a new class of anti-tubercular agents.

Acoustic Doppler current profiling from the JGOFS Arabian Sea cruises aboard the RV T.G. Thompson

Energy Technology Data Exchange (ETDEWEB)

Kim, H.S.; Flagg, C.N.; Shi, Y. [Brookhaven National Lab., Upton, NY (United States). Oceanographic and Atmospheric Sciences Div.

1996-12-01

Acoustic Doppler current profiler (ADCP) data is part of the core data for the US JGOFS Arabian Sea project, along with hydrographic and nutrient data. Seventeen cruises are scheduled to take place between September 1994 and January 1996 on the R/V T.G. Thompson. Seven of the cruises follow a standard cruise track, taking hydrographic, chemical and biological measurements. The rest of the cruises, which take place generally within the standard cruise region defined by a set track, are for the deployment and recovery of moored equipment and towing of a SeaSoar. Detailed description of ADCP hardware, the AutoADCP data acquisition system, and the collection of navigation and compass data on the Thompson is documented in Section 2. Followed by data collection for each cruise together with a cruise track, Section 3 presents the processing and analysis of velocity and acoustic backscatter intensity data. Section 5 shows results of profile quality diagnosis.

SPECTRAL SMILE CORRECTION IN CRISM HYPERSPECTRAL IMAGES

Science.gov (United States)

Ceamanos, X.; Doute, S.

2009-12-01

The Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) is affected by a common artifact in "push-broom" sensors, the so-called "spectral smile". As a consequence, both central wavelength and spectral width of the spectral response vary along the across-track dimension, thus giving rise to a shifting and smoothing of spectra (see Fig. 1 (left)). In fact, both effects are greater for spectra on the edges, while they are minimum for data acquired by central detectors, the so-called "sweet spot". The prior artifacts become particularly critical for Martian observations which contain steep spectra such as CO2 ice-rich polar images. Fig. 1 (right) shows the horizontal brightness gradient which appears in every band corresponding to a steep portion of spectra. The correction of CRISM spectral smile is addressed using a two-step method which aims at modifying data sensibly in order to mimic the optimal CRISM response. First, all spectra, which are previously interpolated by cubic splines, are resampled to the "sweet spot" wavelengths in order to overcome the spectra shift. Secondly, the non-uniform spectral width is overcome by mimicking an increase of spectral resolution thanks to a spectral sharpening. In order to minimize noise, only bands particularly suffering from smile are selected. First, bands corresponding to the outliers of the Minimum Noise Transformation (MNF) eigenvector, which corresponds to the MNF band related to smile (MNF-smile), are selected. Then, a spectral neighborhood Θi, which takes into account the local spectral convexity or concavity, is defined for every selected band in order to maximize spectral shape preservation. The proposed sharpening technique takes into account both the instrument parameters and the observed spectra. First, every reflectance value belonging to a Θi is reevaluated by a sharpening which depends on a ratio of the spectral width of the current detector and the "sweet spot" one. Then, the optimal degree of

Carbon Dioxide, Hydrographic, and Chemical Data Obtained During the R/V Ronald H. Brown Repeat Hydrography Cruise in the Atlantic Ocean: CLIVAR CO2 Section A16S_2005 (11 January - 24 February, 2005)

Energy Technology Data Exchange (ETDEWEB)

Kozyr, Alex [Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Carbon Dioxide Information Analysis Center

2006-08-30

This report presents methods, and analytical and quality control procedures for salinity, oxygen, nutrient, inorganic carbon, organic carbon, chlorofluorocarbon (CFC), and bomb ¹⁴C system parameters performed during the A16S_2005 cruise, which took place from January 11 to February 24, 2005, aboard research vessel (R/V) Ronald H. Brown under the auspices of the National Oceanic and Atmospheric Administration (NOAA). The R/V Ronald H. Brown departed Punta Arenas, Chile, on January 11, 2005, and ended its cruise in Fortaleza, Brazil, on February 24, 2005. The research conducted was one of a series of repeat hydrography sections jointly funded by NOAA and the National Science Foundation as part of the CLIVAR/CO₂/repeat hydrography/tracer program. Samples were taken from 36 depths at 121 stations. The data presented in this report include the analyses of water samples for total inorganic carbon (TCO₂), fugacity of CO₂ (fCO₂), total alkalinity (TALK), pH, dissolved organic carbon (DOC), CFC, ¹⁴C, hydrographic, and other chemical measurements. The R/V Ronald H. Brown A16S_2005 data set is available free of charge as a numeric data package (NDP) from the Carbon Dioxide Information Analysis Center (CDIAC). The NDP consists of the oceanographic data files and this printed documentation, which describes the procedures and methods used to obtain the data.

Buckling feedback of the spectral calculations

International Nuclear Information System (INIS)

Jing Xingqing; Shan Wenzhi; Luo Jingyu

1992-01-01

This paper studies the problems about buckling feedback of spectral calculations in physical calculations of the reactor and presents a useful method by which the buckling feedback of spectral calculations is implemented. The effect of the buckling feedback in spectra and the broad group cross section, convergence of buckling feedback iteration and the effect of the spectral zones dividing are discussed in the calculations. This method has been used for the physical design of HTR-10 MW Test Module

Functional characterization of the NhaA Na+/H+ antiporter from the green picoalga Ostreococcus tauri.

Science.gov (United States)

Dawut, Keatisuda; Sirisattha, Sophon; Hibino, Takashi; Kageyama, Hakuto; Waditee-Sirisattha, Rungaroon

2018-07-01

Transmembrane ion transport is a critical process in the cellular response to salt stress. Among the known functional membrane transporters that are involved in the salt stress response, Na + /H + antiporters have been extensively studied. These ubiquitous membrane proteins are crucial for salt tolerance and are associated with the regulation of internal pH, cell volume, morphogenesis, and vesicular trafficking. Molecular and functional analyses of Na + /H + antiporters have been characterized among taxa but little is known about algal Na + /H + antiporters. Here, we analyzed putative Na + /H + antiporters from the complete genome sequence of the marine picoalga Ostreococcus tauri. At least 10 putative Na + /H + antiporters belonging to the SOS1, NHX, and KEA/Kef families were found. Surprisingly, a bacterial type NhaA sequence (OtNhaA) was also found. Topological modeling of OtNhaA predicted 12 possible transmembrane segments with a long N-terminus. The full-length (FL_OtNhaA) and N-terminal truncated (ΔN112_OtNhaA) versions of OtNhaA were constructed, expressed in the salt-sensitive mutant Escherichia coli TO114, and functionally characterized. Complementation analysis revealed that FL_OtNhaA- and ΔN112_OtNhaA-expressing cells exhibited increased tolerance to high NaCl concentrations up to 700 mM. Antiporter activity assays showed that both FL_OtNhaA and ΔN112_OtNhaA proteins predominantly exhibited Na + /H + and Ca 2+ /H + antiporter activities at alkaline pH conditions. Intriguingly, the ΔN112_OtNhaA exhibited higher Na + /H + and Ca 2+ /H + antiporter activities compared to FL_OtNhaA. Kinetic analysis revealed that FL_OtNhaA has a high affinity for Na + and Ca 2+ ions with a K m of 1.1 ± 0.23 mM for Na + (at pH 8.5) and a K m of 0.3 ± 0.07 mM for Ca 2+ (at pH 8.5). Since NhaA has shown striking diversity among taxa, our results provide insight into the functional properties of the algal NhaA Na + /H + antiporter. These results will

Spectral Slope as an Indicator of Pasture Quality

Directory of Open Access Journals (Sweden)

Rachel Lugassi

2014-12-01

Full Text Available In this study, we develop a spectral method for assessment of pasture quality based only on the spectral information obtained with a small number of wavelengths. First, differences in spectral behavior were identified across the near infrared–shortwave infrared spectral range that were indicative of changes in chemical properties. Then, slopes across different spectral ranges were calculated and correlated with the changes in crude protein (CP, neutral detergent fiber (NDF and metabolic energy concentration (MEC. Finally, partial least squares (PLS regression analysis was applied to identify the optimal spectral ranges for accurate assessment of CP, NDF and MEC. Six spectral domains and a set of slope criteria for real-time evaluation of pasture quality were suggested. The evaluation of three level categories (low, medium, high for these three parameters showed a success rate of: 73%–96% for CP, 72%–87% for NDF and 60%–85% for MEC. Moreover, only one spectral range, 1748–1764 nm, was needed to provide a good estimation of CP, NDF and MEC. Importantly, five of the six selected spectral regions were not affected by water absorbance. With some modifications, this rationale can be applied to further analyses of pasture quality from airborne sensors.

Crystallization Process of Protein Rv0731c from Mycobacterium Tuberculosis for a Successful Atomic Resolution Crystal Structure at 1.2 Angstrom

Energy Technology Data Exchange (ETDEWEB)

Zhu, Liang Cong

2009-06-08

Proteins are bio-macromolecules consisting of basic 20 amino acids and have distinct three-dimensional folds. They are essential parts of organisms and participate in every process within cells. Proteins are crucial for human life, and each protein within the body has a specific function, such as antibodies, contractile proteins, enzymes, hormonal proteins, structural proteins, storage proteins and transport proteins. Determining three-dimensional structure of a protein can help researchers discover the remarkable protein folding, binding site, conformation and etc, in order to understand well of protein interaction and aid for possible drug design. The research on protein structure by X-ray protein crystallography carried by Li-Wei Hung's research group in the Physical Bioscience Division at Lawrence Berkeley National Laboratory (LBNL) is focusing on protein crystallography. The research in this lab is in the process of from crystallizing the proteins to determining the three dimensional crystal structures of proteins. Most protein targets are selected from Mycobacterium Tuberculosis. TB (Tuberculosis) is a possible fatal infectious disease. By studying TB target protein can help discover antituberculer drugs, and find treatment for TB. The high-throughput mode of crystallization, crystal harvesting, crystal screening and data collection are applied to the research pipeline (Figure 1). The X-ray diffraction data by protein crystals can be processed and analyzed to result in a three dimensional representation of electron density, producing a detailed model of protein structure. Rv0731c is a conserved hypothetical protein with unknown function from Mycobacterium Tuberculosis. This paper is going to report the crystallization process and brief structure information of Rv0731c.

Carbon Dioxide, Hydrographic, and Chemical Data Obtained During the R/V Thomas G. Thompson Cruise in the Pacific Ocean

Energy Technology Data Exchange (ETDEWEB)

Sabine, C.L.; Key, R.M.; Hall, M.; Kozyr, A.

1999-08-01

This data documentation discusses the procedures and methods used to measure total carbon dioxide (TCO2), total alkalinity (TALK), and radiocarbon (delta 14C), at hydrographic stations, as well as the underway partial pressure of CO2 (pCO2) during the R/V Thomas G. Thompson oceanographic cruise in the Pacific Ocean (Section P10). Conducted as part of the World Ocean Circulation Experiment (WOCE), the cruise began in Suva, Fiji, on October 5, 1993, and ended in Yokohama, Japan, on November 10, 1993. Measurements made along WOCE Section P10 included pressure, temperature, salinity [measured by conductivity temperature, and depth sensor (CTD)], bottle salinity, bottle oxygen, phosphate, nitrate, silicate, chlorofluorocarbons (CFC-11, CFC-12), TCO2, TALK, delta 14C, and underway pCO2.

Doubly end-on azido bridged mixed-valence cobalt trinuclear complex: Spectral study, VTM, inhibitory effect and antimycobacterial activity on human carcinoma and tuberculosis cells

Science.gov (United States)

Datta, Amitabha; Das, Kuheli; Sen, Chandana; Karan, Nirmal Kumar; Huang, Jui-Hsien; Lin, Chia-Her; Garribba, Eugenio; Sinha, Chittaranjan; Askun, Tulin; Celikboyun, Pinar; Mane, Sandeep B.

2015-09-01

Doubly end-on azido-bridged mixed-valence trinuclear cobalt complex, [Co3(L)2(N3)6(CH3OH)2] (1) is afforded by employing a potential monoanionic tetradentate-N2O2 Schiff base precursor (2-[{[2-(dimethylamino)ethyl]imino}methyl]-6-methoxyphenol; HL). Single crystal X-ray structure reveals that in 1, the adjacent CoII and CoIII ions are linked by double end-on azido bridges and thus the full molecule is generated by the site symmetry of a crystallographic twofold rotation axis. Complex 1 is subjected on different spectral analysis such as IR, UV-vis, emission and EPR spectroscopy. On variable temperature magnetic study, we observe that during cooling, the χMT values decrease smoothly until 15 K and then reaches to the value 1.56 cm3 K mol-1 at 2 K. Complex 1 inhibits the cell growth on human lung carcinoma (A549 cells), human colorectal (COLO 205 and HT-29 cells), and human heptacellular (PLC5 cells) carcinoma cells. Complex 1 exhibits anti-mycobacterial activity and considerable efficacy on Mycobacterium tuberculosis H37Rv ATCC 27294 and H37Ra ATCC 25177 strains.

Spectrally-Selective Photonic Structures for PV Applications

Directory of Open Access Journals (Sweden)

Benedikt Bläsi

2010-01-01

Full Text Available We review several examples of how spectrally-selective photonic structures may be used to improve solar cell systems. Firstly, we introduce different spectrally-selective structures that are based on interference effects. Examples shown include Rugate filter, edge filter and 3D photonic crystals such as artificial opals. In the second part, we discuss several examples of photovoltaic (PV concepts that utilize spectral selectivity such as fluorescence collectors, upconversion systems, spectrum splitting concepts and the intermediate reflector concept. The potential of spectrally selective filters in the context of solar cells is discussed.

Multi-Configuration Matched Spectral Filter Core, Phase I

Data.gov (United States)

National Aeronautics and Space Administration — OPTRA proposes an open-architecture spectral gas sensor based on compressive sensing concepts employed for both spatial and spectral domains. Our matched spectral...

Adinkras, Dessins, Origami, and Supersymmetry Spectral Triples

OpenAIRE

Marcolli, Matilde; Zolman, Nick

2016-01-01

We investigate the spectral geometry and spectral action functionals associated to 1D Supersymmetry Algebras, using the classification of these superalgebras in terms of Adinkra graphs and the construction of associated dessin d'enfant and origami curves. The resulting spectral action functionals are computed in terms of the Selberg (super) trace formula.

Nutrients data from bottle casts in the Bering Sea from the R/V ALPHA HELIX as part of the Inner Shelf Transport and Recycling Project 04 July 1986 to 25 September 1986 (NODC Accession 0000293)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Nitrate, nitrite, phosphate, silicate, and other data were collected from the R/V ALPHA HELIX from July 4, 1986 to September 25, 1986. Data were submitted by...

Oxygen-rich Mass Loss with a Pinch of Salt: NaCl in the Circumstellar Gas of IK Tauri and VY Canis Majoris

Science.gov (United States)

Milam, S. N.; Apponi, A. J.; Woolf, N. J.; Ziurys, L. M.

2007-10-01

The NaCl molecule has been observed in the circumstellar envelopes of VY Canis Majoris (VY CMa) and IK Tauri (IK Tau)-the first identifications of a metal refractory in oxygen-rich shells of evolved stars. Five rotational transitions of NaCl at 1 and 2 mm were detected toward VY CMa and three 1 mm lines were observed toward IK Tau, using the telescopes of the Arizona Radio Observatory. In both objects, the line widths of the NaCl profiles were extremely narrow relative to those of other molecules, indicating that sodium chloride has not reached the terminal outflow velocity in either star, likely a result of early condensation onto grains. Modeling the observed spectra suggests abundances, relative to H2, of f~5×10-9 in VY CMa and f~4×10-9 in IK Tau, with source sizes of 0.5" and 0.3", respectively. The extent of these sources is consistent with the size of the dust acceleration zones in both stars. NaCl therefore appears to be at least as abundant in O-rich shells as compared to C-rich envelopes, where f~(0.2-2)×10-9, although it appears to condense out earlier in the O-rich case. Chemical equilibrium calculations indicate that NaCl is the major carrier of sodium at T~1100 K for oxygen-rich stars, with predicted fractional abundances in good agreement with the observations. These measurements suggest that crystalline salt may be an important condensate for sodium in both C- and O-rich circumstellar shells.

The X-Shooter spectral library

NARCIS (Netherlands)

Chen, Y. P.; Trager, S. C.; Peletier, R. F.; Lançon, A.; Prugniel, Ph.; Koleva, M.

2012-01-01

We are building a new spectral library with the X-Shooter instrument on ESO's VLT: XSL, the X-Shooter Spectral Library. We present our progress in building XSL, which covers the wavelength range from the near-UV to the near-IR with a resolution of R˜10000. As of now we have collected spectra for

A New Measurement of the Spectral Lag of Gamma-Ray Bursts and its Implications for Spectral Evolution Behaviors

Energy Technology Data Exchange (ETDEWEB)

Shao, Lang; Wang, Fu-Ri; Cheng, Ye-Hao; Zhang, Xi; Yu, Bang-Yao; Xi, Bao-Jia; Wang, Xue; Feng, Huan-Xue; Zhang, Meng, E-mail: lshao@hebtu.edu.cn [Department of Space Sciences and Astronomy, Hebei Normal University, Shijiazhuang 050024 (China); Zhang, Bin-Bin [Instituto de Astrofísica de Andalucá (IAA-CSIC), P.O. Box 03004, E-18080 Granada (Spain); Wu, Xue-Feng [Purple Mountain Observatory, Chinese Academy of Sciences, Nanjing 210008 (China); Xu, Dong [Key Laboratory of Space Astronomy and Technology, National Astronomical Observatories, Chinese Academy of Sciences, Beijing 100012 (China)

2017-08-01

We carry out a systematical study of the spectral lag properties of 50 single-pulsed gamma-ray bursts (GRBs) detected by the Fermi Gamma-Ray Burst Monitor. By dividing the light curves into multiple consecutive energy channels, we provide a new measurement of the spectral lag that is independent of energy channel selections. We perform a detailed statistical study of our new measurements. We find two similar power-law energy dependencies of both the pulse arrival time and pulse width. Our new results on the power-law indices would favor the relativistic geometric effects for the origin of spectral lag. However, a complete theoretical framework that can fully account for the diverse energy dependencies of both arrival time and pulse width revealed in this work is still lacking. We also study the spectral evolution behaviors of the GRB pulses. We find that a GRB pulse with negligible spectral lag would usually have a shorter pulse duration and would appear to have a “hardness-intensity tracking” behavior, and a GRB pulse with a significant spectral lag would usually have a longer pulse duration and would appear to have a “hard-to-soft” behavior.

Learning theory of distributed spectral algorithms

International Nuclear Information System (INIS)

Guo, Zheng-Chu; Lin, Shao-Bo; Zhou, Ding-Xuan

2017-01-01

Spectral algorithms have been widely used and studied in learning theory and inverse problems. This paper is concerned with distributed spectral algorithms, for handling big data, based on a divide-and-conquer approach. We present a learning theory for these distributed kernel-based learning algorithms in a regression framework including nice error bounds and optimal minimax learning rates achieved by means of a novel integral operator approach and a second order decomposition of inverse operators. Our quantitative estimates are given in terms of regularity of the regression function, effective dimension of the reproducing kernel Hilbert space, and qualification of the filter function of the spectral algorithm. They do not need any eigenfunction or noise conditions and are better than the existing results even for the classical family of spectral algorithms. (paper)

The Open Spectral Database: an open platform for sharing and searching spectral data.

Science.gov (United States)

Chalk, Stuart J

2016-01-01

A number of websites make available spectral data for download (typically as JCAMP-DX text files) and one (ChemSpider) that also allows users to contribute spectral files. As a result, searching and retrieving such spectral data can be time consuming, and difficult to reuse if the data is compressed in the JCAMP-DX file. What is needed is a single resource that allows submission of JCAMP-DX files, export of the raw data in multiple formats, searching based on multiple chemical identifiers, and is open in terms of license and access. To address these issues a new online resource called the Open Spectral Database (OSDB) http://osdb.info/ has been developed and is now available. Built using open source tools, using open code (hosted on GitHub), providing open data, and open to community input about design and functionality, the OSDB is available for anyone to submit spectral data, making it searchable and available to the scientific community. This paper details the concept and coding, internal architecture, export formats, Representational State Transfer (REST) Application Programming Interface and options for submission of data. The OSDB website went live in November 2015. Concurrently, the GitHub repository was made available at https://github.com/stuchalk/OSDB/, and is open for collaborators to join the project, submit issues, and contribute code. The combination of a scripting environment (PHPStorm), a PHP Framework (CakePHP), a relational database (MySQL) and a code repository (GitHub) provides all the capabilities to easily develop REST based websites for ingestion, curation and exposure of open chemical data to the community at all levels. It is hoped this software stack (or equivalent ones in other scripting languages) will be leveraged to make more chemical data available for both humans and computers.

SPECTRAL ANALYSIS OF EXCHANGE RATES

Directory of Open Access Journals (Sweden)

ALEŠA LOTRIČ DOLINAR

2013-06-01

Full Text Available Using spectral analysis is very common in technical areas but rather unusual in economics and finance, where ARIMA and GARCH modeling are much more in use. To show that spectral analysis can be useful in determining hidden periodic components for high-frequency finance data as well, we use the example of foreign exchange rates

Nutrients profile data from the R/V ALPHA HELIX in the Bering Sea in support of the Inner Shelf Transport and Recycling Project (ISHTAR) from 13 July 1985 to 14 October 1985 (NODC Accession 0000276)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Ammonium, nitrate, nitrite, phosphate, silicate, and urea data were collected from the R/V ALPHA HELIX from July 13, 1985 to October 14, 1985. Data were submitted by...

SPECTRAL SETS AND TILES IN CARTESIAN PRODUCTS OVER ...

Indian Academy of Sciences (India)

41

Spectral set conjecture: A Borel set Ω ⊂ Rd of positive and finite. Lebesgue measure is a spectral set if and only if it ... Ω ⊂ G of positive and finite Haar measure is a spectral set if and only if it is a translational tile. ... Key words and phrases. p-adic number field, Cartesian product, tile, spectral set. This work was supported by ...

Photovoltaic spectral responsivity measurements

Energy Technology Data Exchange (ETDEWEB)

Emery, K.; Dunlavy, D.; Field, H.; Moriarty, T. [National Renewable Energy Lab., Golden, CO (United States)

1998-09-01

This paper discusses the various elemental random and nonrandom error sources in typical spectral responsivity measurement systems. The authors focus specifically on the filter and grating monochrometer-based spectral responsivity measurement systems used by the Photovoltaic (PV) performance characterization team at NREL. A variety of subtle measurement errors can occur that arise from a finite photo-current response time, bandwidth of the monochromatic light, waveform of the monochromatic light, and spatial uniformity of the monochromatic and bias lights; the errors depend on the light source, PV technology, and measurement system. The quantum efficiency can be a function of he voltage bias, light bias level, and, for some structures, the spectral content of the bias light or location on the PV device. This paper compares the advantages and problems associated with semiconductor-detector-based calibrations and pyroelectric-detector-based calibrations. Different current-to-voltage conversion and ac photo-current detection strategies employed at NREL are compared and contrasted.

Spectral dimension of quantum geometries

International Nuclear Information System (INIS)

Calcagni, Gianluca; Oriti, Daniele; Thürigen, Johannes

2014-01-01

The spectral dimension is an indicator of geometry and topology of spacetime and a tool to compare the description of quantum geometry in various approaches to quantum gravity. This is possible because it can be defined not only on smooth geometries but also on discrete (e.g., simplicial) ones. In this paper, we consider the spectral dimension of quantum states of spatial geometry defined on combinatorial complexes endowed with additional algebraic data: the kinematical quantum states of loop quantum gravity (LQG). Preliminarily, the effects of topology and discreteness of classical discrete geometries are studied in a systematic manner. We look for states reproducing the spectral dimension of a classical space in the appropriate regime. We also test the hypothesis that in LQG, as in other approaches, there is a scale dependence of the spectral dimension, which runs from the topological dimension at large scales to a smaller one at short distances. While our results do not give any strong support to this hypothesis, we can however pinpoint when the topological dimension is reproduced by LQG quantum states. Overall, by exploring the interplay of combinatorial, topological and geometrical effects, and by considering various kinds of quantum states such as coherent states and their superpositions, we find that the spectral dimension of discrete quantum geometries is more sensitive to the underlying combinatorial structures than to the details of the additional data associated with them. (paper)

Influence of spectral resolution, spectral range and signal-to-noise ratio of Fourier transform infra-red spectra on identification of high explosive substances

Science.gov (United States)

Banas, Krzysztof; Banas, Agnieszka M.; Heussler, Sascha P.; Breese, Mark B. H.

2018-01-01

In the contemporary spectroscopy there is a trend to record spectra with the highest possible spectral resolution. This is clearly justified if the spectral features in the spectrum are very narrow (for example infra-red spectra of gas samples). However there is a plethora of samples (in the liquid and especially in the solid form) where there is a natural spectral peak broadening due to collisions and proximity predominately. Additionally there is a number of portable devices (spectrometers) with inherently restricted spectral resolution, spectral range or both, which are extremely useful in some field applications (archaeology, agriculture, food industry, cultural heritage, forensic science). In this paper the investigation of the influence of spectral resolution, spectral range and signal-to-noise ratio on the identification of high explosive substances by applying multivariate statistical methods on the Fourier transform infra-red spectral data sets is studied. All mathematical procedures on spectral data for dimension reduction, clustering and validation were implemented within R open source environment.

Extracting attosecond delays from spectrally overlapping interferograms

Science.gov (United States)

Jordan, Inga; Wörner, Hans Jakob

2018-02-01

Attosecond interferometry is becoming an increasingly popular technique for measuring the dynamics of photoionization in real time. Whereas early measurements focused on atomic systems with very simple photoelectron spectra, the technique is now being applied to more complex systems including isolated molecules and solids. The increase in complexity translates into an augmented spectral congestion, unavoidably resulting in spectral overlap in attosecond interferograms. Here, we discuss currently used methods for phase retrieval and introduce two new approaches for determining attosecond photoemission delays from spectrally overlapping photoelectron spectra. We show that the previously used technique, consisting in the spectral integration of the areas of interest, does in general not provide reliable results. Our methods resolve this problem, thereby opening the technique of attosecond interferometry to complex systems and fully exploiting its specific advantages in terms of spectral resolution compared to attosecond streaking.

Water temperature, salinity, and other data from CTD taken from the RV Sikuliaq in the Pacific Ocean between San Diego, California and Manzanillo, Mexico from 2016-12-21 to 2017-01-13 (NCEI Accession 0164968)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This report contains data from R/V Sikuliaq cruise SKQ201617S to the eastern tropical north pacific oxygen deficient zone. The objective of the cruise was to study...

Abundance estimation of spectrally similar minerals

CSIR Research Space (South Africa)

Debba, Pravesh

2009-07-01

Full Text Available This paper evaluates a spectral unmixing method for estimating the partial abundance of spectrally similar minerals in complex mixtures. The method requires formulation of a linear function of individual spectra of individual minerals. The first...

Salinity and spectral reflectance of soils

Science.gov (United States)

Szilagyi, A.; Baumgardner, M. F.

1991-01-01

The basic spectral response related to the salt content of soils in the visible and reflective IR wavelengths is analyzed in order to explore remote sensing applications for monitoring processes of the earth system. The bidirectional reflectance factor (BRF) was determined at 10 nm of increments over the 520-2320-nm spectral range. The effect of salts on reflectance was analyzed on the basis of 162 spectral measurements. MSS and TM bands were simulated within the measured spectral region. A strong relationship was found in variations of reflectance and soil characteristics pertaining to salinization and desalinization. Although the individual MSS bands had high R-squared values and 75-79 percent of soil/treatment combinations were separable, there was a large number of soil/treatment combinations not distinguished by any of the four highly correlated MSS bands under consideration.

Digital staining for histopathology multispectral images by the combined application of spectral enhancement and spectral transformation.

Science.gov (United States)

Bautista, Pinky A; Yagi, Yukako

2011-01-01

In this paper we introduced a digital staining method for histopathology images captured with an n-band multispectral camera. The method consisted of two major processes: enhancement of the original spectral transmittance and the transformation of the enhanced transmittance to its target spectral configuration. Enhancement is accomplished by shifting the original transmittance with the scaled difference between the original transmittance and the transmittance estimated with m dominant principal component (PC) vectors;the m-PC vectors were determined from the transmittance samples of the background image. Transformation of the enhanced transmittance to the target spectral configuration was done using an nxn transformation matrix, which was derived by applying a least square method to the enhanced and target spectral training data samples of the different tissue components. Experimental results on the digital conversion of a hematoxylin and eosin (H&E) stained multispectral image to its Masson's trichrome stained (MT) equivalent shows the viability of the method.

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the East Coast - US/Canada in support of the Integrated Global Ocean Services System (IGOSS) project for 1969-07-10 (NODC Accession 7600701)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

Semiconductor Laser Multi-Spectral Sensing and Imaging

Directory of Open Access Journals (Sweden)

Han Q. Le

2010-01-01

Full Text Available Multi-spectral laser imaging is a technique that can offer a combination of the laser capability of accurate spectral sensing with the desirable features of passive multispectral imaging. The technique can be used for detection, discrimination, and identification of objects by their spectral signature. This article describes and reviews the development and evaluation of semiconductor multi-spectral laser imaging systems. Although the method is certainly not specific to any laser technology, the use of semiconductor lasers is significant with respect to practicality and affordability. More relevantly, semiconductor lasers have their own characteristics; they offer excellent wavelength diversity but usually with modest power. Thus, system design and engineering issues are analyzed for approaches and trade-offs that can make the best use of semiconductor laser capabilities in multispectral imaging. A few systems were developed and the technique was tested and evaluated on a variety of natural and man-made objects. It was shown capable of high spectral resolution imaging which, unlike non-imaging point sensing, allows detecting and discriminating objects of interest even without a priori spectroscopic knowledge of the targets. Examples include material and chemical discrimination. It was also shown capable of dealing with the complexity of interpreting diffuse scattered spectral images and produced results that could otherwise be ambiguous with conventional imaging. Examples with glucose and spectral imaging of drug pills were discussed. Lastly, the technique was shown with conventional laser spectroscopy such as wavelength modulation spectroscopy to image a gas (CO. These results suggest the versatility and power of multi-spectral laser imaging, which can be practical with the use of semiconductor lasers.

Semiconductor laser multi-spectral sensing and imaging.

Science.gov (United States)

Le, Han Q; Wang, Yang

2010-01-01

Multi-spectral laser imaging is a technique that can offer a combination of the laser capability of accurate spectral sensing with the desirable features of passive multispectral imaging. The technique can be used for detection, discrimination, and identification of objects by their spectral signature. This article describes and reviews the development and evaluation of semiconductor multi-spectral laser imaging systems. Although the method is certainly not specific to any laser technology, the use of semiconductor lasers is significant with respect to practicality and affordability. More relevantly, semiconductor lasers have their own characteristics; they offer excellent wavelength diversity but usually with modest power. Thus, system design and engineering issues are analyzed for approaches and trade-offs that can make the best use of semiconductor laser capabilities in multispectral imaging. A few systems were developed and the technique was tested and evaluated on a variety of natural and man-made objects. It was shown capable of high spectral resolution imaging which, unlike non-imaging point sensing, allows detecting and discriminating objects of interest even without a priori spectroscopic knowledge of the targets. Examples include material and chemical discrimination. It was also shown capable of dealing with the complexity of interpreting diffuse scattered spectral images and produced results that could otherwise be ambiguous with conventional imaging. Examples with glucose and spectral imaging of drug pills were discussed. Lastly, the technique was shown with conventional laser spectroscopy such as wavelength modulation spectroscopy to image a gas (CO). These results suggest the versatility and power of multi-spectral laser imaging, which can be practical with the use of semiconductor lasers.

CLASSICAL T TAURI-LIKE OUTFLOW ACTIVITY IN THE BROWN DWARF MASS REGIME

International Nuclear Information System (INIS)

Whelan, E. T.; Ray, T. P.; Podio, L.; Bacciotti, F.; Randich, S.

2009-01-01

Over the last number of years, spectroscopic studies have strongly supported the assertion that protostellar accretion and outflow activity persist to the lowest masses. Indeed, previous to this work, the existence of three brown dwarf (BD) outflows had been confirmed by us. In this paper, we present the results of our latest investigation of BD outflow activity and report on the discovery of two new outflows. Observations to date have concentrated on studying the forbidden emission line (FEL) regions of young BDs and in all cases data have been collected using the UV-Visual Echelle Spectrometer (UVES) on the ESO Very Large Telescope. Offsets in the FEL regions are recovered using spectro-astrometry. Here, ISO-Oph 32 is shown to drive a blueshifted outflow with a radial velocity of 10-20 km s -1 and spectro-astrometric analysis constrains the position angle of this outflow to 240 0 ± 7 0 . The BD candidate, ISO-ChaI 217 is found to have a bipolar outflow bright in several key forbidden lines (V RAD = -20 km s -1 , +40 km s -1 ) and with a P.A. of 193 0 -209 0 . A striking feature of the ISO-ChaI 217 outflow is the strong asymmetry between the red- and blueshifted lobes. This asymmetry is revealed in the relative brightness of the two lobes (redshifted lobe is brighter), the factor of 2 difference in radial velocity (the redshifted lobe is faster) and the difference in the electron density (again higher in the red lobe). Such asymmetries are common in jets from low-mass protostars and the observation of a marked asymmetry at such a low mass ( sun ) supports the idea that BD outflow activity is scaled down from low-mass protostellar activity. Also note that although asymmetries are unexceptional, it is uncommon for the redshifted lobe to be the brightest as some obscuration by the accretion disk is assumed. This phenomenon has only been observed in one other source, the classical T Tauri (CTTS) star RW Aur. The physical mechanism responsible for the brightening of

X-ray sources in regions of star formation. II. The pre-main-sequence G star HDE 283572

International Nuclear Information System (INIS)

Walter, F.M.; Brown, A.; Linsky, J.L.; Rydgren, A.E.; Vrba, F.; Joint Institute for Laboratory Astrophysics, Boulder, CO; Computer Sciences Corp., El Segundo, CA; Naval Observatory, Flagstaff, AZ)

1987-01-01

This paper reports the detection of HDE 283572, a ninth-magnitude G star 8 arcmin south of RY Tau, as a bright X-ray source. The observations reveal this object to be a fairly massive (about 2 solar masses) pre-main-sequence star associated with the Taurus-Auriga star formation complex. It exhibits few of the characteristics of the classical T Tauri stars and is a good example of a naked T Tauri star. The star is a mid-G subgiant, of about three solar radii and rotates with a period of 1.5 d. The coronal and chromospheric surface fluxes are similar to those of the most active late type stars (excluding T Tauri stars). The X-ray and UV lines most likely arise in different atmospheric structures. Radiative losses are some 1000 times the quiet solar value and compare favorably with those of T Tauri stars. 49 references

Spectral Imaging of Portolan Charts

Science.gov (United States)

France, Fenella G.; Wilson, Meghan A.; Ghez, Anita

2018-05-01

Spectral imaging of Portolan Charts, early nautical charts, provided extensive new information about their construction and creation. The origins of the portolan chart style have been a continual source of perplexity to numerous generations of cartographic historians. The spectral imaging system utilized incorporates a 50 megapixel mono-chrome camera with light emitting diode (LED) illumination panels that cover the range from 365 nm to 1050 nm to capture visible and non-visible information. There is little known about how portolan charts evolved, and what influenced their creation. These early nautical charts began as working navigational tools of medieval mariners, initially made in the 1300s in Italy, Portugal and Spain; however the origin and development of the portolan chart remained shrouded in mystery. Questions about these early navigational charts included whether colorants were commensurate with the time period and geographical location, and if different, did that give insight into trade routes, or possible later additions to the charts? For example; spectral data showed the red pigment on both the 1320 portolan chart and the 1565 Galapagos Islands matched vermillion, an opaque red pigment used since antiquity. The construction of these charts was also of great interest. Spectral imaging with a range of illumination modes revealed the presence of a "hidden circle" often referred to in relation to their construction. This paper will present in-depth analysis of how spectral imaging of the Portolans revealed similarities and differences, new hidden information and shed new light on construction and composition.

Computer-assisted spectral design and synthesis

Science.gov (United States)

Vadakkumpadan, Fijoy; Wang, Qiqi; Sun, Yinlong

2005-01-01

In this paper, we propose a computer-assisted approach for spectral design and synthesis. This approach starts with some initial spectrum, modifies it interactively, evaluates the change, and decides the optimal spectrum. Given a requested change as function of wavelength, we model the change function using a Gaussian function. When there is the metameric constraint, from the Gaussian function of request change, we propose a method to generate the change function such that the result spectrum has the same color as the initial spectrum. We have tested the proposed method with different initial spectra and change functions, and implemented an interactive graphics environment for spectral design and synthesis. The proposed approach and graphics implementation for spectral design and synthesis can be helpful for a number of applications such as lighting of building interiors, textile coloration, and pigment development of automobile paints, and spectral computer graphics.

Intermediate spectral theory and quantum dynamics

CERN Document Server

de Oliveira, Cesar R

2008-01-01

The spectral theory of linear operators plays a key role in the mathematical formulation of quantum theory. Furthermore, such a rigorous mathematical foundation leads to a more profound insight into the nature of quantum mechanics. This textbook provides a concise and comprehensible introduction to the spectral theory of (unbounded) self-adjoint operators and its application in quantum dynamics. The book places emphasis on the symbiotic relationship of these two domains by (1) presenting the basic mathematics of nonrelativistic quantum mechanics of one particle, i.e., developing the spectral theory of self-adjoint operators in infinite-dimensional Hilbert spaces from the beginning, and (2) giving an overview of many of the basic functional aspects of quantum theory, from its physical principles to the mathematical models. The book is intended for graduate (or advanced undergraduate) students and researchers interested in mathematical physics. It starts with linear operator theory, spectral questions and self-...

Accurate and independent spectral response scale based on silicon trap detectors and spectrally invariant detectors

International Nuclear Information System (INIS)

Gran, Jarle

2005-01-01

The study aims to establish an independent high accuracy spectral response scale over a broad spectral range based on standard laboratory equipment at a moderate cost. This had to be done by a primary method, where the responsivity of the detector is linked to fundamental constants. Summary, conclusion and future directions: In this thesis it has been demonstrated that an independent spectral response scale from the visual to the IR based on simple relative measurements can be established. The accuracy obtained by the hybrid self-calibration method demonstrates that state of the art accuracy is obtained with self-calibration principles. A calculable silicon trap detector with low internal losses over a wide spectral range is needed to establish the scale, in addition to a linear, spectrally independent detector with a good signal to noise ratio. By fitting the parameters in the responsivity model to a purely relative measurement we express the spectral response in terms of fundamental constants with a known uncertainty This is therefore a primary method. By applying a digital filter on the relative measurements of the InGaAs detectors in the infrared reduces the standard deviation by 30 %. In addition, by optimising the necessary scaling constant converting the relative calibration to absolute values, we have managed to establish an accurate and cost efficient spectral response scale in the IR. The full covariance analysis, which takes into account the correlation in the absolute values of the silicon detector, the correlation caused by the filter and the scaling constant, shows that the spectral response scale established in the infrared with InGaAs detectors is done with high accuracy. A similar procedure can be used in the UV, though it has not been demonstrated here. In fig. 10 the responsitivities of the detectors (a) and their associated uncertainties (b) at the 1 sigma level of confidence is compared for the three publications. We see that the responsivity

Emissivity compensated spectral pyrometry—algorithm and sensitivity analysis

International Nuclear Information System (INIS)

Hagqvist, Petter; Sikström, Fredrik; Christiansson, Anna-Karin; Lennartson, Bengt

2014-01-01

In order to solve the problem of non-contact temperature measurements on an object with varying emissivity, a new method is herein described and evaluated. The method uses spectral radiance measurements and converts them to temperature readings. It proves to be resilient towards changes in spectral emissivity and tolerates noisy spectral measurements. It is based on an assumption of smooth changes in emissivity and uses historical values of spectral emissivity and temperature for estimating current spectral emissivity. The algorithm, its constituent steps and accompanying parameters are described and discussed. A thorough sensitivity analysis of the method is carried out through simulations. No rigorous instrument calibration is needed for the presented method and it is therefore industrially tractable. (paper)

Effects of spectral smearing on performance of the spectral ripple and spectro-temporal ripple tests.

Science.gov (United States)

Narne, Vijaya Kumar; Sharma, Mridula; Van Dun, Bram; Bansal, Shalini; Prabhu, Latika; Moore, Brian C J

2016-12-01

The main aim of this study was to use spectral smearing to evaluate the efficacy of a spectral ripple test (SRt) using stationary sounds and a recent variant with gliding ripples called the spectro-temporal ripple test (STRt) in measuring reduced spectral resolution. In experiment 1 the highest detectable ripple density was measured using four amounts of spectral smearing (unsmeared, mild, moderate, and severe). The thresholds worsened with increasing smearing and were similar for the SRt and the STRt across the three conditions with smearing. For unsmeared stimuli, thresholds were significantly higher (better) for the STRt than for the SRt. An amplitude fluctuation at the outputs of simulated (gammatone) auditory filters centered above 6400 Hz was identified as providing a potential detection cue for the STRt stimuli. Experiment 2 used notched noise with energy below and above the passband of the SRt and STRt stimuli to reduce confounding cues in the STRt. Thresholds were almost identical for the STRt and SRt for both unsmeared and smeared stimuli, indicating that the confounding cue for the STRt was eliminated by the notched noise. Thresholds obtained with notched noise present could be predicted reasonably accurately using an excitation-pattern model.

Spectral Compressive Sensing with Polar Interpolation

DEFF Research Database (Denmark)

Fyhn, Karsten; Dadkhahi, Hamid; F. Duarte, Marco

2013-01-01

. In this paper, we introduce a greedy recovery algorithm that leverages a band-exclusion function and a polar interpolation function to address these two issues in spectral compressive sensing. Our algorithm is geared towards line spectral estimation from compressive measurements and outperforms most existing...

Carbon Dioxide, Hydrographic, and Chemical Data Obtained During the R/V Thomas G. Thompson Cruise in the Pacific Ocean; TOPICAL

International Nuclear Information System (INIS)

Sabine, C.L.; Key, R.M.; Hall, M.; Kozyr, A.

1999-01-01

This data documentation discusses the procedures and methods used to measure total carbon dioxide (TCO2), total alkalinity (TALK), and radiocarbon (delta 14C), at hydrographic stations, as well as the underway partial pressure of CO2 (pCO2) during the R/V Thomas G. Thompson oceanographic cruise in the Pacific Ocean (Section P10). Conducted as part of the World Ocean Circulation Experiment (WOCE), the cruise began in Suva, Fiji, on October 5, 1993, and ended in Yokohama, Japan, on November 10, 1993. Measurements made along WOCE Section P10 included pressure, temperature, salinity[measured by conductivity temperature, and depth sensor (CTD)], bottle salinity, bottle oxygen, phosphate, nitrate, silicate, chlorofluorocarbons (CFC-11, CFC-12), TCO2, TALK, delta 14C, and underway pCO2

USGS Digital Spectral Library splib06a

Science.gov (United States)

Clark, Roger N.; Swayze, Gregg A.; Wise, Richard A.; Livo, K. Eric; Hoefen, Todd M.; Kokaly, Raymond F.; Sutley, Stephen J.

2007-01-01

Introduction We have assembled a digital reflectance spectral library that covers the wavelength range from the ultraviolet to far infrared along with sample documentation. The library includes samples of minerals, rocks, soils, physically constructed as well as mathematically computed mixtures, plants, vegetation communities, microorganisms, and man-made materials. The samples and spectra collected were assembled for the purpose of using spectral features for the remote detection of these and similar materials. Analysis of spectroscopic data from laboratory, aircraft, and spacecraft instrumentation requires a knowledge base. The spectral library discussed here forms a knowledge base for the spectroscopy of minerals and related materials of importance to a variety of research programs being conducted at the U.S. Geological Survey. Much of this library grew out of the need for spectra to support imaging spectroscopy studies of the Earth and planets. Imaging spectrometers, such as the National Aeronautics and Space Administration (NASA) Airborne Visible/Infra Red Imaging Spectrometer (AVIRIS) or the NASA Cassini Visual and Infrared Mapping Spectrometer (VIMS) which is currently orbiting Saturn, have narrow bandwidths in many contiguous spectral channels that permit accurate definition of absorption features in spectra from a variety of materials. Identification of materials from such data requires a comprehensive spectral library of minerals, vegetation, man-made materials, and other subjects in the scene. Our research involves the use of the spectral library to identify the components in a spectrum of an unknown. Therefore, the quality of the library must be very good. However, the quality required in a spectral library to successfully perform an investigation depends on the scientific questions to be answered and the type of algorithms to be used. For example, to map a mineral using imaging spectroscopy and the mapping algorithm of Clark and others (1990a, 2003b

Maximum spectral demands in the near-fault region

Science.gov (United States)

Huang, Yin-Nan; Whittaker, Andrew S.; Luco, Nicolas

2008-01-01

The Next Generation Attenuation (NGA) relationships for shallow crustal earthquakes in the western United States predict a rotated geometric mean of horizontal spectral demand, termed GMRotI50, and not maximum spectral demand. Differences between strike-normal, strike-parallel, geometric-mean, and maximum spectral demands in the near-fault region are investigated using 147 pairs of records selected from the NGA strong motion database. The selected records are for earthquakes with moment magnitude greater than 6.5 and for closest site-to-fault distance less than 15 km. Ratios of maximum spectral demand to NGA-predicted GMRotI50 for each pair of ground motions are presented. The ratio shows a clear dependence on period and the Somerville directivity parameters. Maximum demands can substantially exceed NGA-predicted GMRotI50 demands in the near-fault region, which has significant implications for seismic design, seismic performance assessment, and the next-generation seismic design maps. Strike-normal spectral demands are a significantly unconservative surrogate for maximum spectral demands for closest distance greater than 3 to 5 km. Scale factors that transform NGA-predicted GMRotI50 to a maximum spectral demand in the near-fault region are proposed.

Spectral features in the cosmic ray fluxes

Science.gov (United States)

Lipari, Paolo

2018-01-01

The cosmic ray energy distributions contain spectral features, that is narrow energy regions where the slope of the spectrum changes rapidly. The identification and study of these features is of great importance to understand the astrophysical mechanisms of acceleration and propagation that form the spectra. In first approximation a spectral feature is often described as a discontinuous change in slope, however very valuable information is also contained in its width, that is the length of the energy interval where the change in spectral index develops. In this work we discuss the best way to define and parameterize the width a spectral feature, and for illustration discuss some of the most prominent known structures.

The LAMOST spectroscopic survey of stars in the Kepler field of view: Activity indicators and stellar parameters

Science.gov (United States)

Molenda-Żakowicz, Joanna; Frasca, Antonio; De Cat, Peter; Catanzaro, Giovanni

2017-09-01

We summarize the results of the completed first round of the LAMOST-Kepler project, and describe the status of its on-going second round. As a result of the first round of this project, the atmospheric parameters (Teff, log g, and [Fe/H]), the spectral classification (spectral type and luminosity class), and the radial velocities (RV) have been measured for 51,385 stars. For 4031 stars, we were able to measure the projected rotational velocity, while the minimum detectable v sin i was 120 km s-1. For 8821 stars with more than one observation, we computed the χ-square probability that the detected RV variations have a random occurrence. Finally, we classified 442 stars as chromospherically active on the basis of the analysis of their Hα and Ca II-IRT fluxes. All our results have been obtained from the low-resolution (R ˜ 1800) spectroscopic observations acquired with the LAMOST instrument. Based on observations collected with the Large Sky Area Multi-Object Fiber Spectroscopic Telescope (LAMOST) located at the Xinglong Observatory, China.

Spectral State Evolution of 4U 1820-30: the Stability of the Spectral Index of Comptonization Tail

Science.gov (United States)

Titarchuk, Lev G.; Seifina, Elena; Frontera, Filippo

2013-01-01

We analyze the X-ray spectra and their timing properties of the compact Xray binary 4U 1820-30. We establish spectral transitions in this source seen with BeppoSAX and the Rossi X-ray Timing Explorer (RXTE). During the RXTE observations (1996 - 2009), the source were approximately approximately 75% of its time in the soft state making the lower banana and upper banana transitions combined with long-term low-high state transitions. We reveal that all of the X-ray spectra of 4U 1820-30 are fit by a composition of a thermal (blackbody) component, a Comptonization component (COMPTB) and a Gaussian-line component. Thus using this spectral analysis we find that the photon power-law index Gamma of the Comptonization component is almost unchangeable (Gamma approximately 2) while the electron temperature kTe changes from 2.9 to 21 keV during these spectral events. We also establish that for these spectral events the normalization of COMPTB component (which is proportional to mass accretion rate ?M) increases by factor 8 when kTe decreases from 21 keV to 2.9 keV. Before this index stability effect was also found analyzing X-ray data for Z-source GX 340+0 and for atolls, 4U 1728-34, GX 3+1. Thus, we can suggest that this spectral stability property is a spectral signature of an accreting neutron star source. On the other hand in a black hole binary G monotonically increases with ?Mand ultimately its value saturates at large ?M.

Total spectral distributions from Hawking radiation

Energy Technology Data Exchange (ETDEWEB)

Broda, Boguslaw [University of Lodz, Department of Theoretical Physics, Faculty of Physics and Applied Informatics, Lodz (Poland)

2017-11-15

Taking into account the time dependence of the Hawking temperature and finite evaporation time of the black hole, the total spectral distributions of the radiant energy and of the number of particles have been explicitly calculated and compared to their temporary (initial) blackbody counterparts (spectral exitances). (orig.)

Spectral zone selection methodology for pebble bed reactors

International Nuclear Information System (INIS)

Mphahlele, Ramatsemela; Ougouag, Abderrafi M.; Ivanov, Kostadin N.; Gougar, Hans D.

2011-01-01

A methodology is developed for determining boundaries of spectral zones for pebble bed reactors. A spectral zone is defined as a region made up of a number of nodes whose characteristics are collectively similar and that are assigned the same few-group diffusion constants. The spectral zones are selected in such a manner that the difference (error) between the reference transport solution and the diffusion code solution takes a minimum value. This is achieved by choosing spectral zones through optimally minimizing this error. The objective function for the optimization algorithm is the total reaction rate error, which is defined as the sum of the leakage, absorption and fission reaction rates errors in each zone. The selection of these spectral zones is such that the core calculation results based on diffusion theory are within an acceptable tolerance as compared to a proper transport reference solution. Through this work, a consistent approach for identifying spectral zones that yield more accurate diffusion results is introduced.

Spectral analysis and filter theory in applied geophysics

CERN Document Server

Buttkus, Burkhard

2000-01-01

This book is intended to be an introduction to the fundamentals and methods of spectral analysis and filter theory and their appli­ cations in geophysics. The principles and theoretical basis of the various methods are described, their efficiency and effectiveness eval­ uated, and instructions provided for their practical application. Be­ sides the conventional methods, newer methods arediscussed, such as the spectral analysis ofrandom processes by fitting models to the ob­ served data, maximum-entropy spectral analysis and maximum-like­ lihood spectral analysis, the Wiener and Kalman filtering methods, homomorphic deconvolution, and adaptive methods for nonstation­ ary processes. Multidimensional spectral analysis and filtering, as well as multichannel filters, are given extensive treatment. The book provides a survey of the state-of-the-art of spectral analysis and fil­ ter theory. The importance and possibilities ofspectral analysis and filter theory in geophysics for data acquisition, processing an...

Diagnostic spectral characteristics of damouritization in granite type uranium deposit

International Nuclear Information System (INIS)

He Jianguo; Mao Yuxian; Li Jianzhong; Wang Changliang; Feng Mingyue; Rong Jiashu; Zhu Minqiang; Rao Minghui

2008-01-01

Spectral characteristics of different alteration type in uranium deposit are the prerequisite of selecting remote sensing spectral bands for uranium reconnaissance and exploration. It is also a basis for mapping alteration zone using imaging spectral data. Taking the No. 201 uranium deposit as example, the paper is focused on the spectral characteristics researching of damouritization in granite type uranium deposite. Through extracting diagnostic spectral feature of damourite and analyzing the reason causing absorption valley, it was found that spectral characteristics of damouritization in Chinese uranium deposit is different from that of illite in the spectral library published abroad. (authors)

Diagnostic spectral characteristics of damouritization in granite type uranium deposit

Energy Technology Data Exchange (ETDEWEB)

Jianguo, He; Yuxian, Mao; Jianzhong, Li; Changliang, Wang; Mingyue, Feng; Jiashu, Rong [Beijing Research Inst. of Uranium Geology, Beijing (China); Minqiang, Zhu; Minghui, Rao [East China Univ. of Technology, Fuzhou (China)

2008-07-15

Spectral characteristics of different alteration type in uranium deposit are the prerequisite of selecting remote sensing spectral bands for uranium reconnaissance and exploration. It is also a basis for mapping alteration zone using imaging spectral data. Taking the No. 201 uranium deposit as example, the paper is focused on the spectral characteristics researching of damouritization in granite type uranium deposite. Through extracting diagnostic spectral feature of damourite and analyzing the reason causing absorption valley, it was found that spectral characteristics of damouritization in Chinese uranium deposit is different from that of illite in the spectral library published abroad. (authors)

FSD: Frequency Space Differential measurement of CMB spectral distortions

Science.gov (United States)

Mukherjee, Suvodip; Silk, Joseph; Wandelt, Benjamin D.

2018-04-01

Although the Cosmic Microwave Background agrees with a perfect blackbody spectrum within the current experimental limits, it is expected to exhibit certain spectral distortions with known spectral properties. We propose a new method, Frequency Space Differential (FSD) to measure the spectral distortions in the CMB spectrum by using the inter-frequency differences of the brightness temperature. The difference between the observed CMB temperature at different frequencies must agree with the frequency derivative of the blackbody spectrum, in the absence of any distortion. However, in the presence of spectral distortions, the measured inter-frequency differences would also exhibit deviations from blackbody which can be modeled for known sources of spectral distortions like y & μ. Our technique uses FSD information for the CMB blackbody, y, μ or any other sources of spectral distortions to model the observed signal. Successful application of this method in future CMB missions can provide an alternative method to extract spectral distortion signals and can potentially make it feasible to measure spectral distortions without an internal blackbody calibrator.

Biochemical characterization and novel inhibitor identification of Mycobacterium tuberculosis Endonuclease VIII 2 (Rv3297

Directory of Open Access Journals (Sweden)

Kiran Lata

2017-12-01

Full Text Available Nei2 (Rv3297 is a DNA Base Excision Repair (BER glycosylase that is essential for survival of Mycobacterium tuberculosis in primates. We show that MtbNei2 is a bifunctional glycosylase that specifically acts on oxidized pyrimidine-containing single-stranded, double-stranded, 5’/3’ fork and bubble DNA substrates. MtbNei2 possesses Uracil DNA glycosylase activity unlike E. coli Nei. Mutational studies demonstrate that Pro2 and Glu3 located in the active site are essential for glycosylase activity of MtbNei2. Mutational analysis demonstrated that an unstructured C-terminal zinc finger domain that was important for activity in E. coli Nei and Fpg, was not required for the glycosylase activity of MtbNei2. Lastly, we screened the NCI natural product compound database and identified three natural product inhibitors with IC50 values ranging between 41.8 μM-92.7 μM against MtbNei2 in in vitro inhibition assays. Surface Plasmon Resonance (SPR experiments showed that the binding affinity of the best inhibitor, NSC31867, was 74 nM. The present results set the stage for exploiting this important target in developing new therapeutic strategies that target Mycobacterial BER.

Spectral signature verification using statistical analysis and text mining

Science.gov (United States)

DeCoster, Mallory E.; Firpi, Alexe H.; Jacobs, Samantha K.; Cone, Shelli R.; Tzeng, Nigel H.; Rodriguez, Benjamin M.

2016-05-01

In the spectral science community, numerous spectral signatures are stored in databases representative of many sample materials collected from a variety of spectrometers and spectroscopists. Due to the variety and variability of the spectra that comprise many spectral databases, it is necessary to establish a metric for validating the quality of spectral signatures. This has been an area of great discussion and debate in the spectral science community. This paper discusses a method that independently validates two different aspects of a spectral signature to arrive at a final qualitative assessment; the textual meta-data and numerical spectral data. Results associated with the spectral data stored in the Signature Database1 (SigDB) are proposed. The numerical data comprising a sample material's spectrum is validated based on statistical properties derived from an ideal population set. The quality of the test spectrum is ranked based on a spectral angle mapper (SAM) comparison to the mean spectrum derived from the population set. Additionally, the contextual data of a test spectrum is qualitatively analyzed using lexical analysis text mining. This technique analyzes to understand the syntax of the meta-data to provide local learning patterns and trends within the spectral data, indicative of the test spectrum's quality. Text mining applications have successfully been implemented for security2 (text encryption/decryption), biomedical3 , and marketing4 applications. The text mining lexical analysis algorithm is trained on the meta-data patterns of a subset of high and low quality spectra, in order to have a model to apply to the entire SigDB data set. The statistical and textual methods combine to assess the quality of a test spectrum existing in a database without the need of an expert user. This method has been compared to other validation methods accepted by the spectral science community, and has provided promising results when a baseline spectral signature is

Enzyme activity measurement via spectral evolution profiling and PARAFAC

DEFF Research Database (Denmark)

Baum, Andreas; Meyer, Anne S.; Garcia, Javier Lopez

2013-01-01

The recent advances in multi-way analysis provide new solutions to traditional enzyme activity assessment. In the present study enzyme activity has been determined by monitoring spectral changes of substrates and products in real time. The method relies on measurement of distinct spectral...... fingerprints of the reaction mixture at specific time points during the course of the whole enzyme catalyzed reaction and employs multi-way analysis to detect the spectral changes. The methodology is demonstrated by spectral evolution profiling of Fourier Transform Infrared (FTIR) spectral fingerprints using...

Spectral decomposition of tent maps using symmetry considerations

International Nuclear Information System (INIS)

Ordonez, G.E.; Driebe, D.J.

1996-01-01

The spectral decompostion of the Frobenius-Perron operator of maps composed of many tents is determined from symmetry considerations. The eigenstates involve Euler as well as Bernoulli polynomials. The authors have introduced some new techniques, based on symmetry considerations, enabling the construction of spectral decompositions in a much simpler way than previous construction algorithms, Here we utilize these techniques to construct the spectral decomposition for one- dimensional maps of the unit interval composed of many tents. The construction uses the knowledge of the spectral decomposition of the r-adic map, which involves Bernoulli polynomials and their duals. It will be seen that the spectral decomposition of the tent maps involves both Bernoulli polynomials and Euler polynomials along with the appropriate dual states

Multi-spectral confocal microendoscope for in-vivo imaging

Science.gov (United States)

Rouse, Andrew Robert

The concept of in-vivo multi-spectral confocal microscopy is introduced. A slit-scanning multi-spectral confocal microendoscope (MCME) was built to demonstrate the technique. The MCME employs a flexible fiber-optic catheter coupled to a custom built slit-scan confocal microscope fitted with a custom built imaging spectrometer. The catheter consists of a fiber-optic imaging bundle linked to a miniature objective and focus assembly. The design and performance of the miniature objective and focus assembly are discussed. The 3mm diameter catheter may be used on its own or routed though the instrument channel of a commercial endoscope. The confocal nature of the system provides optical sectioning with 3mum lateral resolution and 30mum axial resolution. The prism based multi-spectral detection assembly is typically configured to collect 30 spectral samples over the visible chromatic range. The spectral sampling rate varies from 4nm/pixel at 490nm to 8nm/pixel at 660nm and the minimum resolvable wavelength difference varies from 7nm to 18nm over the same spectral range. Each of these characteristics are primarily dictated by the dispersive power of the prism. The MCME is designed to examine cellular structures during optical biopsy and to exploit the diagnostic information contained within the spectral domain. The primary applications for the system include diagnosis of disease in the gastro-intestinal tract and female reproductive system. Recent data from the grayscale imaging mode are presented. Preliminary multi-spectral results from phantoms, cell cultures, and excised human tissue are presented to demonstrate the potential of in-vivo multi-spectral imaging.

Spectral backward radiation profile

International Nuclear Information System (INIS)

Kwon, Sung Duck; Lee, Keun Hyun; Kim, Bo Ra; Yoon, Suk Soo

2004-01-01

Ultrasonic backward radiation profile is frequency-dependent when incident region has deptional gradient of acoustical properties or multi-layers. Until now, we have measured the profiles of principal frequencies of used transducers so that it was not easy to understand the change of the frequency component and spectrum of backward radiation from the profile. We tried to measure the spectral backward radiation profiles using DFP(digital filer package) Lecroy DSO. The very big changes in the shape and pattern of spectral backward radiation profiles leads to the conclusion that this new try could be very effective tool to evaluate frequency dependent surface area.

CTD, salinity, temperature, oxygen, and depth data for Cruise DP01 from the R/V Point Sur in the Viosca Knoll, Gulf of Mexico, 2015-05-01 to 2015-05-08 (NCEI Accession 0142203)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Deep water sampling of in situ seawater and associated fauna (cruise DP01, May 1-8, 2015) aboard the R/V Point Sur for an area encompassing roughly 28°N to 29°N...

Rayleigh imaging in spectral mammography

Science.gov (United States)

Berggren, Karl; Danielsson, Mats; Fredenberg, Erik

2016-03-01

Spectral imaging is the acquisition of multiple images of an object at different energy spectra. In mammography, dual-energy imaging (spectral imaging with two energy levels) has been investigated for several applications, in particular material decomposition, which allows for quantitative analysis of breast composition and quantitative contrast-enhanced imaging. Material decomposition with dual-energy imaging is based on the assumption that there are two dominant photon interaction effects that determine linear attenuation: the photoelectric effect and Compton scattering. This assumption limits the number of basis materials, i.e. the number of materials that are possible to differentiate between, to two. However, Rayleigh scattering may account for more than 10% of the linear attenuation in the mammography energy range. In this work, we show that a modified version of a scanning multi-slit spectral photon-counting mammography system is able to acquire three images at different spectra and can be used for triple-energy imaging. We further show that triple-energy imaging in combination with the efficient scatter rejection of the system enables measurement of Rayleigh scattering, which adds an additional energy dependency to the linear attenuation and enables material decomposition with three basis materials. Three available basis materials have the potential to improve virtually all applications of spectral imaging.

Spectral functions from hadronic τ decays

International Nuclear Information System (INIS)

Davier, Michel

2002-01-01

Hadronic decays of the τ lepton provide a clean environment to study hadron dynamics in an energy regime dominated by romances, with the interesting information captured in the spectral functions. Recent results on exclusive channels are reviewed. Inclusive spectral functions are the basis for QCD analyses, delivering an accurate determination of the strong coupling constant and quantitative information on nonpertubative contributions. the τ vector spectral functions for the 2π and 4π final states are used together with e p+ e p- data in order to compute vacuum polarization integrals occurring in the calculations of the anomalous magnetic moment of the muon and the running of the electromagnetic coupling

Adiabatic theorem and spectral concentration

International Nuclear Information System (INIS)

Nenciu, G.

1981-01-01

The spectral concentration of arbitrary order, for the Stark effect is proved to exist for a large class of Hamiltonians appearing in nonrelativistic and relativistic quantum mechanics. The results are consequences of an abstract theorem about the spectral concentration for self-ad oint operators. A general form of the adiabatic theorem of quantum mechanics, generalizing an earlier result of the author as well as some results of Lenard, is also proved [ru

Method for estimating effects of unknown correlations in spectral irradiance data on uncertainties of spectrally integrated colorimetric quantities

Science.gov (United States)

Kärhä, Petri; Vaskuri, Anna; Mäntynen, Henrik; Mikkonen, Nikke; Ikonen, Erkki

2017-08-01

Spectral irradiance data are often used to calculate colorimetric properties, such as color coordinates and color temperatures of light sources by integration. The spectral data may contain unknown correlations that should be accounted for in the uncertainty estimation. We propose a new method for estimating uncertainties in such cases. The method goes through all possible scenarios of deviations using Monte Carlo analysis. Varying spectral error functions are produced by combining spectral base functions, and the distorted spectra are used to calculate the colorimetric quantities. Standard deviations of the colorimetric quantities at different scenarios give uncertainties assuming no correlations, uncertainties assuming full correlation, and uncertainties for an unfavorable case of unknown correlations, which turn out to be a significant source of uncertainty. With 1% standard uncertainty in spectral irradiance, the expanded uncertainty of the correlated color temperature of a source corresponding to the CIE Standard Illuminant A may reach as high as 37.2 K in unfavorable conditions, when calculations assuming full correlation give zero uncertainty, and calculations assuming no correlations yield the expanded uncertainties of 5.6 K and 12.1 K, with wavelength steps of 1 nm and 5 nm used in spectral integrations, respectively. We also show that there is an absolute limit of 60.2 K in the error of the correlated color temperature for Standard Illuminant A when assuming 1% standard uncertainty in the spectral irradiance. A comparison of our uncorrelated uncertainties with those obtained using analytical methods by other research groups shows good agreement. We re-estimated the uncertainties for the colorimetric properties of our 1 kW photometric standard lamps using the new method. The revised uncertainty of color temperature is a factor of 2.5 higher than the uncertainty assuming no correlations.

Spectral concentration in the nonrelativistic limit

International Nuclear Information System (INIS)

Gesztesy, F.; Grosse, H.; Thaller, B.

1982-01-01

First order relativistic corrections to the Schroedinger operator according to Foldy and Wouthuysen are rigorously discussed in the framework of singular perturbation theory. For Coulomb plus short-range interactions we investigate the corresponding spectral properties and prove spectral concentration and existence of first order pseudoeigenvalues in the nonrelativistic limit. (Author)

Spectral Methods in Numerical Plasma Simulation

DEFF Research Database (Denmark)

Coutsias, E.A.; Hansen, F.R.; Huld, T.

1989-01-01

An introduction is given to the use of spectral methods in numerical plasma simulation. As examples of the use of spectral methods, solutions to the two-dimensional Euler equations in both a simple, doubly periodic region, and on an annulus will be shown. In the first case, the solution is expanded...

Aquecimento alfvênico viscoso-resistivo em discos de acresção ao redor de estrelas T Tauri clássicas

Science.gov (United States)

Santana, W. M.; Vasconcelos, M. J.

2003-08-01

Com a crescente disponibilidade de dados observacionais sobre estrelas T Tauri, a busca por modelos mais precisos vem se tornando cada vez maior. Estes modelos devem explicar, entre outras coisas, o mecanismo dissipativo responsável pelo transporte de momento angular no disco de acresção que acredita-se, circunda estas estrelas. O mecanismo mais viável, do ponto de vista teórico, é uma instabilidade MHD conhecida como "instabilidade magnetorotacional ou Balbus-Hawley" (IBH). Esta instabilidade veio mostrar que o campo magnético desempenha um papel importante na evolução destes objetos mas requer, no entanto, um acoplamento mínimo entre o gás e o campo magnético no disco que não é atingido para os valores de temperatura obtidos do modelo padrão. Contudo, alguns mecanismos de aquecimento para o disco precisam ser examinados. Neste trabalho, propomos a dissipação de ondas Alfvén como uma fonte de aquecimento para o disco. Se o gás apresentar uma condutividade elétrica finita e viscosidade, teremos um tipo de amortecimento para as ondas denominado amortecimento viscoso-resistivo que será aqui considerado. Este mecanismo é aplicado ao modelo de disco em camadas. Calculam-se as taxas de aquecimento Alfvênico, a temperatura efetiva do disco bem como as taxas de ionização decorrentes deste aquecimento e do aquecimento gerado pela absorção de raios cósmicos. Comparações com os dados observacionais de Kitamura et. al. (2001) são efetuadas, ressaltando-se os pontos comuns entre suas observações e nossos dados teóricos.

THE SPECTRAL INDEX PROPERTIES OF FERMI BLAZARS

Energy Technology Data Exchange (ETDEWEB)

Fan, J. H.; Yang, J. H.; Yuan, Y. H.; Wang, J.; Gao, Y., E-mail: jhfan_cn@yahoo.com.cn [Center for Astrophysics, Guangzhou University, Guangzhou 510006 (China)

2012-12-20

In this paper, a sample of 451 blazars (193 flat spectrum radio quasars (FSRQs), 258 BL Lacertae objects) with corresponding X-ray and Fermi {gamma}-ray data is compiled to investigate the correlation both between the X-ray spectral index and the {gamma}-ray spectral index and between the spectral index and the luminosity, and to compare the spectral indexes {alpha}{sub X}, {alpha}{sub {gamma}}, {alpha}{sub X{gamma}}, and {alpha}{sub {gamma}X{gamma}} for different subclasses. We also investigated the correlation between the X-ray and the {gamma}-ray luminosity. The following results have been obtained. Our analysis indicates that an anti-correlation exists between the X-ray and the {gamma}-ray spectral indexes for the whole sample. However, when we considered the subclasses of blazars (FSRQs, the low-peaked BL Lacertae objects (LBLs) and the high-peaked BL Lacertae objects (HBLs)) separately, there is not a clear relationship for each subclass. Based on the Fermi-detected sources, we can say that the HBLs are different from FSRQs, while the LBLs are similar to FSRQs.

Rectangular spectral collocation

KAUST Repository

Driscoll, Tobin A.; Hale, Nicholas

2015-01-01

Boundary conditions in spectral collocation methods are typically imposed by removing some rows of the discretized differential operator and replacing them with others that enforce the required conditions at the boundary. A new approach based upon

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the Caribbean Sea in support of the Integrated Global Ocean Services System (IGOSS) project from 1975-04-28 to 1975-05-08 (NODC Accession 7600704)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

A Bayesian approach to spectral quantitative photoacoustic tomography

International Nuclear Information System (INIS)

Pulkkinen, A; Kaipio, J P; Tarvainen, T; Cox, B T; Arridge, S R

2014-01-01

A Bayesian approach to the optical reconstruction problem associated with spectral quantitative photoacoustic tomography is presented. The approach is derived for commonly used spectral tissue models of optical absorption and scattering: the absorption is described as a weighted sum of absorption spectra of known chromophores (spatially dependent chromophore concentrations), while the scattering is described using Mie scattering theory, with the proportionality constant and spectral power law parameter both spatially-dependent. It is validated using two-dimensional test problems composed of three biologically relevant chromophores: fat, oxygenated blood and deoxygenated blood. Using this approach it is possible to estimate the Grüneisen parameter, the absolute chromophore concentrations, and the Mie scattering parameters associated with spectral photoacoustic tomography problems. In addition, the direct estimation of the spectral parameters is compared to estimates obtained by fitting the spectral parameters to estimates of absorption, scattering and Grüneisen parameter at the investigated wavelengths. It is shown with numerical examples that the direct estimation results in better accuracy of the estimated parameters. (papers)

Solar Spectral Irradiance Changes During Cycle 24

Science.gov (United States)

Marchenko, Sergey; Deland, Matthew

2014-01-01

We use solar spectra obtained by the Ozone Monitoring Instrument (OMI) on board the Aura satellite to detect and follow long-term (years) and short-term (weeks) changes in the solar spectral irradiance (SSI) in the 265-500 nm spectral range. During solar Cycle 24, in the relatively line-free regions the SSI changed by approximately 0.6% +/- 0.2% around 265 nm. These changes gradually diminish to 0.15% +/- 0.20% at 500 nm. All strong spectral lines and blends, with the notable exception of the upper Balmer lines, vary in unison with the solar "continuum." Besides the lines with strong chromospheric components, the most involved species include Fe I blends and all prominent CH, NH, and CN spectral bands. Following the general trend seen in the solar "continuum," the variability of spectral lines also decreases toward longer wavelengths. The long-term solar cycle SSI changes are closely, to within the quoted 0.1%-0.2% uncertainties, matched by the appropriately adjusted short-term SSI variations derived from the 27 day rotational modulation cycles. This further strengthens and broadens the prevailing notion about the general scalability of the UV SSI variability to the emissivity changes in the Mg II 280 nm doublet on timescales from weeks to years. We also detect subtle deviations from this general rule: the prominent spectral lines and blends at lambda approximately or greater than 350 nm show slightly more pronounced 27 day SSI changes when compared to the long-term (years) trends. We merge the solar data from Cycle 21 with the current Cycle 24 OMI and GOME-2 observations and provide normalized SSI variations for the 170-795 nm spectral region.

SOSPEX, an interactive tool to explore SOFIA spectral cubes

Science.gov (United States)

Fadda, Dario; Chambers, Edward T.

2018-01-01

We present SOSPEX (SOFIA SPectral EXplorer), an interactive tool to visualize and analyze spectral cubes obtained with the FIFI-LS and GREAT instruments onboard the SOFIA Infrared Observatory. This software package is written in Python 3 and it is available either through Github or Anaconda.Through this GUI it is possible to explore directly the spectral cubes produced by the SOFIA pipeline and archived in the SOFIA Science Archive. Spectral cubes are visualized showing their spatial and spectral dimensions in two different windows. By selecting a part of the spectrum, the flux from the corresponding slice of the cube is visualized in the spatial window. On the other hand, it is possible to define apertures on the spatial window to show the corresponding spectral energy distribution in the spectral window.Flux isocontours can be overlapped to external images in the spatial window while line names, atmospheric transmission, or external spectra can be overplotted on the spectral window. Atmospheric models with specific parameters can be retrieved, compared to the spectra and applied to the uncorrected FIFI-LS cubes in the cases where the standard values give unsatisfactory results. Subcubes can be selected and saved as FITS files by cropping or cutting the original cubes. Lines and continuum can be fitted in the spectral window saving the results in Jyson files which can be reloaded later. Finally, in the case of spatially extended observations, it is possible to compute spectral momenta as a function of the position to obtain velocity dispersion maps or velocity diagrams.

Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order.

Science.gov (United States)

Aron, Miles; Browning, Richard; Carugo, Dario; Sezgin, Erdinc; Bernardino de la Serna, Jorge; Eggeling, Christian; Stride, Eleanor

2017-05-12

Spectral imaging with polarity-sensitive fluorescent probes enables the quantification of cell and model membrane physical properties, including local hydration, fluidity, and lateral lipid packing, usually characterized by the generalized polarization (GP) parameter. With the development of commercial microscopes equipped with spectral detectors, spectral imaging has become a convenient and powerful technique for measuring GP and other membrane properties. The existing tools for spectral image processing, however, are insufficient for processing the large data sets afforded by this technological advancement, and are unsuitable for processing images acquired with rapidly internalized fluorescent probes. Here we present a MATLAB spectral imaging toolbox with the aim of overcoming these limitations. In addition to common operations, such as the calculation of distributions of GP values, generation of pseudo-colored GP maps, and spectral analysis, a key highlight of this tool is reliable membrane segmentation for probes that are rapidly internalized. Furthermore, handling for hyperstacks, 3D reconstruction and batch processing facilitates analysis of data sets generated by time series, z-stack, and area scan microscope operations. Finally, the object size distribution is determined, which can provide insight into the mechanisms underlying changes in membrane properties and is desirable for e.g. studies involving model membranes and surfactant coated particles. Analysis is demonstrated for cell membranes, cell-derived vesicles, model membranes, and microbubbles with environmentally-sensitive probes Laurdan, carboxyl-modified Laurdan (C-Laurdan), Di-4-ANEPPDHQ, and Di-4-AN(F)EPPTEA (FE), for quantification of the local lateral density of lipids or lipid packing. The Spectral Imaging Toolbox is a powerful tool for the segmentation and processing of large spectral imaging datasets with a reliable method for membrane segmentation and no ability in programming required. The

Mycobacterium tuberculosis septum site determining protein, Ssd encoded by rv3660c, promotes filamentation and elicits an alternative metabolic and dormancy stress response

Directory of Open Access Journals (Sweden)

Crew Rebecca

2011-04-01

Full Text Available Abstract Background Proteins that are involved in regulation of cell division and cell cycle progression remain undefined in Mycobacterium tuberculosis. In addition, there is a growing appreciation that regulation of cell replication at the point of division is important in establishing a non-replicating persistent state. Accordingly, the objective of this study was to use a systematic approach consisting of consensus-modeling bioinformatics, ultrastructural analysis, and transcriptional mapping to identify septum regulatory proteins that participate in adaptive metabolic responses in M. tuberculosis. Results Septum site determining protein (Ssd, encoded by rv3660c was discovered to be an ortholog of septum site regulating proteins in actinobacteria by bioinformatics analysis. Increased expression of ssd in M. smegmatis and M. tuberculosis inhibited septum formation resulting in elongated cells devoid of septa. Transcriptional mapping in M. tuberculosis showed that increased ssd expression elicited a unique response including the dormancy regulon and alternative sigma factors that are thought to play a role in adaptive metabolism. Disruption of rv3660c by transposon insertion negated the unique transcriptional response and led to a reduced bacterial length. Conclusions This study establishes the first connection between a septum regulatory protein and induction of alternative metabolism consisting of alternative sigma factors and the dormancy regulon that is associated with establishing a non-replicating persistent intracellular lifestyle. The identification of a regulatory component involved in cell cycle regulation linked to the dormancy response, whether directly or indirectly, provides a foundation for additional studies and furthers our understanding of the complex mechanisms involved in establishing a non-replicating state and resumption of growth.

Identification of meat products by shotgun spectral matching

DEFF Research Database (Denmark)

Ohana, D.; Dalebout, H.; Marissen, R. J.

2016-01-01

A new method, based on shotgun spectral matching of peptide tandem mass spectra, was successfully applied to the identification of different food species. The method was demonstrated to work on raw as well as processed samples from 16 mammalian and 10 bird species by counting spectral matches...... to spectral libraries in a reference database with one spectral library per species. A phylogenetic tree could also be constructed directly from the spectra. Nearly all samples could be correctly identified at the species level, and 100% at the genus level. The method does not use any genomic information...

Spectral representations of neutron-star equations of state

International Nuclear Information System (INIS)

Lindblom, Lee

2010-01-01

Methods are developed for constructing spectral representations of cold (barotropic) neutron-star equations of state. These representations are faithful in the sense that every physical equation of state has a representation of this type and conversely every such representation satisfies the minimal thermodynamic stability criteria required of any physical equation of state. These spectral representations are also efficient, in the sense that only a few spectral coefficients are generally required to represent neutron-star equations of state quiet accurately. This accuracy and efficiency is illustrated by constructing spectral fits to a large collection of 'realistic' neutron-star equations of state.

Spectral beam combining of diode lasers with high efficiency

DEFF Research Database (Denmark)

Müller, André; Vijayakumar, Deepak; Jensen, Ole Bjarlin

2012-01-01

Based on spectral beam combining we obtain 16 W of output power, combining two 1063 nm DBR-tapered diode lasers. The spectral separation within the combined beam can be used for subsequent sum-frequency generation.......Based on spectral beam combining we obtain 16 W of output power, combining two 1063 nm DBR-tapered diode lasers. The spectral separation within the combined beam can be used for subsequent sum-frequency generation....

Depth, salinity, and other data were collected from the R/V ALPHA HELIX in the Bering Sea as part of the Inner Shelf Transport and Recycling Project (ISHTAR) from 17 September 1986 to 25 September 1986 (NODC Accession 0000275)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Depth, fluorescence, oxygen, salinity, and water temperature data were collected from the R/V ALPHA HELIX from September 17, 1986 to September 25, 1986. Data were...

Estimating the Spectral Width of a Narrowband Optical Signal

DEFF Research Database (Denmark)

Lading, Lars; Skov Jensen, A.

1980-01-01

Methods for estimating the spectral width of a narrowband optical signal are investigated. Spectral analysis and Fourier spectroscopy are compared. Optimum and close-to-optimum estimators are developed under the constraint of having only one photodetector.......Methods for estimating the spectral width of a narrowband optical signal are investigated. Spectral analysis and Fourier spectroscopy are compared. Optimum and close-to-optimum estimators are developed under the constraint of having only one photodetector....

Spectral line polarimetry with a channeled polarimeter.

Science.gov (United States)

van Harten, Gerard; Snik, Frans; Rietjens, Jeroen H H; Martijn Smit, J; Keller, Christoph U

2014-07-01

Channeled spectropolarimetry or spectral polarization modulation is an accurate technique for measuring the continuum polarization in one shot with no moving parts. We show how a dual-beam implementation also enables spectral line polarimetry at the intrinsic resolution, as in a classic beam-splitting polarimeter. Recording redundant polarization information in the two spectrally modulated beams of a polarizing beam-splitter even provides the possibility to perform a postfacto differential transmission correction that improves the accuracy of the spectral line polarimetry. We perform an error analysis to compare the accuracy of spectral line polarimetry to continuum polarimetry, degraded by a residual dark signal and differential transmission, as well as to quantify the impact of the transmission correction. We demonstrate the new techniques with a blue sky polarization measurement around the oxygen A absorption band using the groundSPEX instrument, yielding a polarization in the deepest part of the band of 0.160±0.010, significantly different from the polarization in the continuum of 0.2284±0.0004. The presented methods are applicable to any dual-beam channeled polarimeter, including implementations for snapshot imaging polarimetry.

SPAM- SPECTRAL ANALYSIS MANAGER (DEC VAX/VMS VERSION)

Science.gov (United States)

Solomon, J. E.

1994-01-01

The Spectral Analysis Manager (SPAM) was developed to allow easy qualitative analysis of multi-dimensional imaging spectrometer data. Imaging spectrometers provide sufficient spectral sampling to define unique spectral signatures on a per pixel basis. Thus direct material identification becomes possible for geologic studies. SPAM provides a variety of capabilities for carrying out interactive analysis of the massive and complex datasets associated with multispectral remote sensing observations. In addition to normal image processing functions, SPAM provides multiple levels of on-line help, a flexible command interpretation, graceful error recovery, and a program structure which can be implemented in a variety of environments. SPAM was designed to be visually oriented and user friendly with the liberal employment of graphics for rapid and efficient exploratory analysis of imaging spectrometry data. SPAM provides functions to enable arithmetic manipulations of the data, such as normalization, linear mixing, band ratio discrimination, and low-pass filtering. SPAM can be used to examine the spectra of an individual pixel or the average spectra over a number of pixels. SPAM also supports image segmentation, fast spectral signature matching, spectral library usage, mixture analysis, and feature extraction. High speed spectral signature matching is performed by using a binary spectral encoding algorithm to separate and identify mineral components present in the scene. The same binary encoding allows automatic spectral clustering. Spectral data may be entered from a digitizing tablet, stored in a user library, compared to the master library containing mineral standards, and then displayed as a timesequence spectral movie. The output plots, histograms, and stretched histograms produced by SPAM can be sent to a lineprinter, stored as separate RGB disk files, or sent to a Quick Color Recorder. SPAM is written in C for interactive execution and is available for two different

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the North Atlantic Ocean in support of the Integrated Global Ocean Services System (IGOSS) project from 1975-11-20 to 1975-12-09 (NODC Accession 7600702)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the North Atlantic Ocean in support of the Integrated Global Ocean Services System (IGOSS) project from 1970-07-12 to 1972-11-04 (NODC Accession 7500783)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the North Atlantic Ocean in support of the Integrated Global Ocean Services System (IGOSS) project from 1975-07-27 to 1975-09-05 (NODC Accession 7501077)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

Temperature profiles from expendable bathythermograph (XBT) casts from the R/V TRIDENT in the South Pacific Ocean in support of the Integrated Global Ocean Services System (IGOSS) project from 1975-04-07 to 1975-04-19 (NODC Accession 7600703)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — XBT data were collected from the R/V TRIDENT in support of the Integrated Global Ocean Services System (IGOSS) project. Data were collected by the University of...

Biologically-inspired data decorrelation for hyper-spectral imaging

Directory of Open Access Journals (Sweden)

Ghita Ovidiu

2011-01-01

Full Text Available Abstract Hyper-spectral data allows the construction of more robust statistical models to sample the material properties than the standard tri-chromatic color representation. However, because of the large dimensionality and complexity of the hyper-spectral data, the extraction of robust features (image descriptors is not a trivial issue. Thus, to facilitate efficient feature extraction, decorrelation techniques are commonly applied to reduce the dimensionality of the hyper-spectral data with the aim of generating compact and highly discriminative image descriptors. Current methodologies for data decorrelation such as principal component analysis (PCA, linear discriminant analysis (LDA, wavelet decomposition (WD, or band selection methods require complex and subjective training procedures and in addition the compressed spectral information is not directly related to the physical (spectral characteristics associated with the analyzed materials. The major objective of this article is to introduce and evaluate a new data decorrelation methodology using an approach that closely emulates the human vision. The proposed data decorrelation scheme has been employed to optimally minimize the amount of redundant information contained in the highly correlated hyper-spectral bands and has been comprehensively evaluated in the context of non-ferrous material classification

Relative spectral response calibration using Ti plasma lines

Science.gov (United States)

Teng, FEI; Congyuan, PAN; Qiang, ZENG; Qiuping, WANG; Xuewei, DU

2018-04-01

This work introduces the branching ratio (BR) method for determining relative spectral responses, which are needed routinely in laser induced breakdown spectroscopy (LIBS). Neutral and singly ionized Ti lines in the 250–498 nm spectral range are investigated by measuring laser-induced micro plasma near a Ti plate and used to calculate the relative spectral response of an entire LIBS detection system. The results are compared with those of the conventional relative spectral response calibration method using a tungsten halogen lamp, and certain lines available for the BR method are selected. The study supports the common manner of using BRs to calibrate the detection system in LIBS setups.

Laser's calibration of an AOTF-based spectral colorimeter

Science.gov (United States)

Emelianov, Sergey P.; Khrustalev, Vladimir N.; Kochin, Leonid B.; Polosin, Lev L.

2003-06-01

The paper is devoted to expedients of AOTF spectral colorimeters calibration. The spectrometer method of color values measuring with reference to spectral colorimeters on AOTF surveyed. The theoretical exposition of spectrometer data processing expedients is offered. The justified source of radiation choice, suitable for calibration of spectral colorimeters is carried out. The experimental results for different acousto-optical mediums and modes of interaction are submitted.

Spectral Textile Detection in the VNIR/SWIR Band

Science.gov (United States)

2015-03-01

which have spectral similarities to background vegetation , are generally more difficult to detect than animal fibers such as wool and artificial fibers...effectiveness at long ranges, and spectral dismount detection currently relies on detecting skin pixels. In scenarios where skin is not exposed, spectral...training set. Classifiers with optimized parameters are used to classify contact data with artificially added noise and remotely-sensed hyperspectral data

On Holo-Hilbert spectral analysis: a full informational spectral representation for nonlinear and non-stationary data

OpenAIRE

Huang, Norden E.; Hu, Kun; Yang, Albert C. C.; Chang, Hsing-Chih; Jia, Deng; Liang, Wei-Kuang; Yeh, Jia Rong; Kao, Chu-Lan; Juan, Chi-Hung; Peng, Chung Kang; Meijer, Johanna H.; Wang, Yung-Hung; Long, Steven R.; Wu, Zhauhua

2016-01-01

The Holo-Hilbert spectral analysis (HHSA) method is introduced to cure the deficiencies of traditional spectral analysis and to give a full informational representation of nonlinear and non-stationary data. It uses a nested empirical mode decomposition and Hilbert–Huang transform (HHT) approach to identify intrinsic amplitude and frequency modulations often present in nonlinear systems. Comparisons are first made with traditional spectrum analysis, which usually achieved its results through c...

Spectral Characteristics of Salinized Soils during Microbial Remediation Processes.

Science.gov (United States)

Ma, Chuang; Shen, Guang-rong; Zhi, Yue-e; Wang, Zi-jun; Zhu, Yun; Li, Xian-hua

2015-09-01

In this study, the spectral reflectance of saline soils, the associated soil salt content (SSC) and the concentrations of salt ions were measured and analysed by tracing the container microbial remediation experiments for saline soil (main salt is sodium chloride) of Dongying City, Shandong Province. The sensitive spectral reflectance bands of saline soils to SSC, Cl- and Na+ in the process of microbial remediation were analysed. The average-dimension reduction of these bands was conducted by using a combination of correlation coefficient and decision coefficient, and by gradually narrowing the sampling interval method. Results showed that the tendency and magnitude of the average spectral reflectance in all bands of saline soils during the total remediation processes were nearly consistent with SSC and with Cl- coocentration, respectively. The degree of salinity of the soil, including SSC and salt ion concentrations, had a significant positive correlation with the spectral reflectance of all bands, particularly in the near-infrared band. The optimal spectral bands of SSC were 1370 to 1445 nm and 1447 to 1608 nm, whereas the optimal spectral bands of Cl- and Na+ were 1336 to 1461 nm and 1471 to 1561 nm, respectively. The relationship model among SSC, soil salt ion concentrations (Cl- and Na+) and soil spectral reflectance of the corresponding optimal spectral band was established. The largest R2 of relationship model between SSC and the average reflectance of associated optimal band reached to 0.95, and RMSEC and RMSEP were 1.076 and 0.591, respectively. Significant statistical analysis of salt factors and soil reflectance for different microbial remediation processes indicated that the spectral response characteristics and sensitivity of SSC to soil reflectance, which implied the feasibility of high spectrum test on soil microbial remediation monitoring, also provided the basis for quick nondestructive monitoring soil bioremediation process by soil spectral