Structure from motion, a low cost, very high resolution method for surveying glaciers using GoPros and opportunistic helicopter flights

Science.gov (United States)

Girod, L.; Nuth, C.; Schellenberger, T.

2014-12-01

The capability of structure from motion techniques to survey glaciers with a very high spatial and temporal resolution is a promising tool for better understanding the dynamic changes of glaciers. Modern software and computing power allow us to produce accurate data sets from low cost surveys, thus improving the observational capabilities on a wider range of glaciers and glacial processes. In particular, highly accurate glacier volume change monitoring and 3D movement computations will be possible Taking advantage of the helicopter flight needed to survey the ice stakes on Kronenbreen, NW Svalbard, we acquired high resolution photogrammetric data over the well-studied Midre Lovénbreen in September 2013. GoPro Hero 2 cameras were attached to the landing gear of the helicopter, acquiring two images per second. A C/A code based GPS was used for registering the stereoscopic model. Camera clock calibration is obtained through fitting together the shapes of the flight given by both the GPS logger and the relative orientation of the images. A DEM and an ortho-image are generated at 30cm resolution from 300 images collected. The comparison with a 2005 LiDAR DEM (5 meters resolution) shows an absolute error in the direct registration of about 6±3m in 3D which could be easily reduced to 1,5±1m by using fine point cloud alignment algorithms on stable ground. Due to the different nature of the acquisition method, it was not possible to use tie point based co-registration. A combination of the DEM and ortho-image is shown with the point cloud in figure below. A second photogrammetric data set will be acquired in September 2014 to survey the annual volume change and movement. These measurements will then be compared to the annual resolution glaciological stake mass balance and velocity measurements to assess the precision of the method to monitor at an annual resolution.

Biogeochemical cycling of radionuclides in the environment

International Nuclear Information System (INIS)

Livens, F.R.

1990-01-01

The biogeochemical cycling of radionuclides with other components such as nutrients around ecosystems is discussed. In particular the behaviour of cesium in freshwater ecosystems since the Chernobyl accident and the behaviour of technetium in the form of pertechnetate anions, TcO 4 , in marine ecosystems is considered. (UK)

Unmanned aerial survey of fallen trees in a deciduous broadleaved forest in eastern Japan.

Science.gov (United States)

Inoue, Tomoharu; Nagai, Shin; Yamashita, Satoshi; Fadaei, Hadi; Ishii, Reiichiro; Okabe, Kimiko; Taki, Hisatomo; Honda, Yoshiaki; Kajiwara, Koji; Suzuki, Rikie

2014-01-01

Since fallen trees are a key factor in biodiversity and biogeochemical cycling, information about their spatial distribution is of use in determining species distribution and nutrient and carbon cycling in forest ecosystems. Ground-based surveys are both time consuming and labour intensive. Remote-sensing technology can reduce these costs. Here, we used high-spatial-resolution aerial photographs (0.5-1.0 cm per pixel) taken from an unmanned aerial vehicle (UAV) to survey fallen trees in a deciduous broadleaved forest in eastern Japan. In nine sub-plots we found a total of 44 fallen trees by ground survey. From the aerial photographs, we identified 80% to 90% of fallen trees that were >30 cm in diameter or >10 m in length, but missed many that were narrower or shorter. This failure may be due to the similarity of fallen trees to trunks and branches of standing trees or masking by standing trees. Views of the same point from different angles may improve the detection rate because they would provide more opportunity to detect fallen trees hidden by standing trees. Our results suggest that UAV surveys will make it possible to monitor the spatial and temporal variations in forest structure and function at lower cost.

Galactic and stellar dynamics in the era of high resolution surveys

Science.gov (United States)

Boily, C. M.; Combes, F.; Hensler, G.; Spurzem, R.

2008-12-01

The conference Galactic and Stellar Dynamics in the Era of High Resolution Surveys took place at the European Doctoral College (EDC) in Strasbourg from 2008 March 16 to 20. The event was co-sponsored by the Astronomische Gesellschaft (AG) and the Société Fran\\c{c}aise d'Astronomie et d'Astrophysique (SF2A), a joint venture aiming to set a new trend of regular thematic meetings in specific areas of research. This special issue of the Astronomische Nachrichten is a compilation of the papers presented at the meeting. We give an outline of the meeting together with a short history of the relations of the two societies.

High-resolution topography using SfM-photogrammetry from UAV for coastal mudflat geomorphic surveys

Science.gov (United States)

Fleury, Jules; Brunier, Guillaume; Michaud, Emma; Anthony, Edward; Morvan, Sylvain; Dussouillez, Philippe; Gardel, Antoine

2016-04-01

The coast between the Amazon and the Orinoco river mouths comprises mud banks formed from the large muddy discharge of the Amazon and migrating westward under the influence of waves and currents. These banks are highly dynamic and strongly affected by complex hydro-bio-geochemical interactions that are also important in mangrove colonization of bare mudflats in the upper intertidal zone of these banks. The surface topography of these mud banks is further affected by physical and biological processes such as tidal channel incision and bioturbation. Surveying the morphology of these mudflats over large areas and at a high-resolution without perturbing their surface is a real challenge that cannot be accomplished using classical survey methods such as RTK-GPS or Total Stations. To overcome this hurdle, we conducted a SfM(Surface from Motion)-photogrammetry experiment over 1 ha of a large intertidal mudflat colonized by pioneer mangroves at the mouth of the Sinnamary estuary in French Guiana. We developed a topographic data acquisition system based on sub-vertical aerial photography from a UAV flying at low altitude (15 m), in order to produce images at 3 mm resolution. A light DJI F550 drone was used, with an automatic flight programming using GPS navigation and a flight plan designed on photogrammetric criteria. The payload was a lightweight (250 grams) Ricoh GR camera with an APS-C sensor of 16.2 Megapixel and including an intervalometer triggering function. The drone had a flight autonomy of 12 minutes thus covering entirely the surrounding mudflat platform. The landing procedure was conducted manually in order for the drone to land safely on a very narrow artificial ground base set up for our experiment. 3D-models and derived products were generated using Agisoft Photoscan Professionnal software. We produced a gridded Digital Surface Model (DSM) and an orthophoto in visible bands at 1 cm and 5mm pixel resolution respectively. The vertical accuracy of the DSM based

Ensonifying Change: Repeat Ultra-High-Resolution Surveys in Monterey Canyon before and after Passage of a Turbidity Current

Science.gov (United States)

Wolfson-Schwehr, M.; Paull, C. K.; Caress, D. W.; Carvajal, C.; Thomas, H. J.; Maier, K. L.; Parsons, D. R.; Simmons, S.

2017-12-01

Turbidity currents are one of the primary means of global sediment transport, yet our understanding of how they interact with the seafloor is hindered by the limited number of direct measurements. The Coordinated Canyon Experiment (CCE; October 2015 - April 2017) has made great strides in addressing this issue by providing direct measurements of turbidity currents and detailed observations of the resulting seafloor change in Monterey Canyon, offshore California. Here we focus on a section of the canyon at 1850-m water depth, where a Seafloor Instrument Node (SIN) recorded passage of three turbidity currents using a range of sensors, including three upward-looking acoustic Doppler current profilers. The fastest event at this site had a maximum velocity of 2.8 m/s, and dragged the 430-Kg SIN 26 m down-canyon. Repeat mapping surveys were conducted four times during the CCE, utilizing a prototype ultra-high-resolution mapping system mounted on the ROV Doc Ricketts. The survey platform hosts a 400-kHz Reson 7125 multibeam sonar, a 3DatDepth SL1 subsea LiDAR, two stereo color cameras, and a Kearfott SeaDevil INS. At a survey altitude of 2.5 m above the bed, the system provides remarkable 5-cm resolution multibeam bathymetry, 1-cm resolution LiDAR bathymetry, and 2-mm resolution photomosaics, and can cover a 100-m2 survey area. Surveys of the SIN site prior to and after the fastest event show areas of net deposition/erosion of 60 cm and 20 cm, respectively. Net deposition occurred in the topographic lows between bedforms, while erosion was focused on the bedform crests. At the end of the experiment, transects of sediment cores were taken by ROV within areas of net deposition. The cores show a variety of sedimentary facies, including muds, sands, gravel, and organic rich layers. Gravel layers have sharp erosive bases. The repeat surveys document the dynamic nature of flute-like scours as the flow events erode and deposit material along the canyon floor, as well as the

Mapping Impervious Surfaces Globally at 30m Resolution Using Landsat Global Land Survey Data

Science.gov (United States)

Brown de Colstoun, E.; Huang, C.; Wolfe, R. E.; Tan, B.; Tilton, J.; Smith, S.; Phillips, J.; Wang, P.; Ling, P.; Zhan, J.; Xu, X.; Taylor, M. P.

2013-12-01

Impervious surfaces, mainly artificial structures and roads, cover less than 1% of the world's land surface (1.3% over USA). Regardless of the relatively small coverage, impervious surfaces have a significant impact on the environment. They are the main source of the urban heat island effect, and affect not only the energy balance, but also hydrology and carbon cycling, and both land and aquatic ecosystem services. In the last several decades, the pace of converting natural land surface to impervious surfaces has increased. Quantitatively monitoring the growth of impervious surface expansion and associated urbanization has become a priority topic across both the physical and social sciences. The recent availability of consistent, global scale data sets at 30m resolution such as the Global Land Survey from the Landsat satellites provides an unprecedented opportunity to map global impervious cover and urbanization at this resolution for the first time, with unprecedented detail and accuracy. Moreover, the spatial resolution of Landsat is absolutely essential to accurately resolve urban targets such a buildings, roads and parking lots. With long term GLS data now available for the 1975, 1990, 2000, 2005 and 2010 time periods, the land cover/use changes due to urbanization can now be quantified at this spatial scale as well. In the Global Land Survey - Imperviousness Mapping Project (GLS-IMP), we are producing the first global 30 m spatial resolution impervious cover data set. We have processed the GLS 2010 data set to surface reflectance (8500+ TM and ETM+ scenes) and are using a supervised classification method using a regression tree to produce continental scale impervious cover data sets. A very large set of accurate training samples is the key to the supervised classifications and is being derived through the interpretation of high spatial resolution (~2 m or less) commercial satellite data (Quickbird and Worldview2) available to us through the unclassified

Multiscale Investigation on Biofilm Distribution and Its Impact on Macroscopic Biogeochemical Reaction Rates

Science.gov (United States)

Yan, Zhifeng; Liu, Chongxuan; Liu, Yuanyuan; Bailey, Vanessa L.

2017-11-01

Biofilms are critical locations for biogeochemical reactions in the subsurface environment. The occurrence and distribution of biofilms at microscale as well as their impacts on macroscopic biogeochemical reaction rates are still poorly understood. This paper investigated the formation and distributions of biofilms in heterogeneous sediments using multiscale models and evaluated the effects of biofilm heterogeneity on local and macroscopic biogeochemical reaction rates. Sediment pore structures derived from X-ray computed tomography were used to simulate the microscale flow dynamics and biofilm distribution in the sediment column. The response of biofilm formation and distribution to the variations in hydraulic and chemical properties was first examined. One representative biofilm distribution was then utilized to evaluate its effects on macroscopic reaction rates using nitrate reduction as an example. The results revealed that microorganisms primarily grew on the surfaces of grains and aggregates near preferential flow paths where both electron donor and acceptor were readily accessible, leading to the heterogeneous distribution of biofilms in the sediments. The heterogeneous biofilm distribution decreased the macroscopic rate of biogeochemical reactions as compared with those in homogeneous cases. Operationally considering the heterogeneous biofilm distribution in macroscopic reactive transport models such as using dual porosity domain concept can significantly improve the prediction of biogeochemical reaction rates. Overall, this study provided important insights into the biofilm formation and distribution in soils and sediments as well as their impacts on the macroscopic manifestation of reaction rates.

Global spectroscopic survey of cloud thermodynamic phase at high spatial resolution, 2005-2015

Science.gov (United States)

Thompson, David R.; Kahn, Brian H.; Green, Robert O.; Chien, Steve A.; Middleton, Elizabeth M.; Tran, Daniel Q.

2018-02-01

The distribution of ice, liquid, and mixed phase clouds is important for Earth's planetary radiation budget, impacting cloud optical properties, evolution, and solar reflectivity. Most remote orbital thermodynamic phase measurements observe kilometer scales and are insensitive to mixed phases. This under-constrains important processes with outsize radiative forcing impact, such as spatial partitioning in mixed phase clouds. To date, the fine spatial structure of cloud phase has not been measured at global scales. Imaging spectroscopy of reflected solar energy from 1.4 to 1.8 µm can address this gap: it directly measures ice and water absorption, a robust indicator of cloud top thermodynamic phase, with spatial resolution of tens to hundreds of meters. We report the first such global high spatial resolution survey based on data from 2005 to 2015 acquired by the Hyperion imaging spectrometer onboard NASA's Earth Observer 1 (EO-1) spacecraft. Seasonal and latitudinal distributions corroborate observations by the Atmospheric Infrared Sounder (AIRS). For extratropical cloud systems, just 25 % of variance observed at GCM grid scales of 100 km was related to irreducible measurement error, while 75 % was explained by spatial correlations possible at finer resolutions.

ROV seafloor surveys combining 5-cm lateral resolution multibeam bathymetry with color stereo photographic imagery

Science.gov (United States)

Caress, D. W.; Hobson, B.; Thomas, H. J.; Henthorn, R.; Martin, E. J.; Bird, L.; Rock, S. M.; Risi, M.; Padial, J. A.

2013-12-01

The Monterey Bay Aquarium Research Institute is developing a low altitude, high-resolution seafloor mapping capability that combines multibeam sonar with stereo photographic imagery. The goal is to obtain spatially quantitative, repeatable renderings of the seafloor with fidelity at scales of 5 cm or better from altitudes of 2-3 m. The initial test surveys using this sensor system are being conducted from a remotely operated vehicle (ROV). Ultimately we intend to field this survey system from an autonomous underwater vehicle (AUV). This presentation focuses on the current sensor configuration, methods for data processing, and results from recent test surveys. Bathymetry data are collected using a 400-kHz Reson 7125 multibeam sonar. This configuration produces 512 beams across a 135° wide swath; each beam has a 0.5° acrosstrack by 1.0° alongtrack angular width. At a 2-m altitude, the nadir beams have a 1.7-cm acrosstrack and 3.5 cm alongtrack footprint. Dual Allied Vision Technology GX1920 2.8 Mpixel color cameras provide color stereo photography of the seafloor. The camera housings have been fitted with corrective optics achieving a 90° field of view through a dome port. Illumination is provided by dual 100J xenon strobes. Position, depth, and attitude data are provided by a Kearfott SeaDevil Inertial Navigation System (INS) integrated with a 300 kHz RDI Doppler velocity log (DVL). A separate Paroscientific pressure sensor is mounted adjacent to the INS. The INS Kalman filter is aided by the DVL velocity and pressure data, achieving navigational drift rates less than 0.05% of the distance traveled during surveys. The sensors are mounted onto a toolsled fitted below MBARI's ROV Doc Ricketts with the sonars, cameras and strobes all pointed vertically down. During surveys the ROV flies at a 2-m altitude at speeds of 0.1-0.2 m/s. During a four-day R/V Western Flyer cruise in June 2013, we successfully collected multibeam and camera survey data from a 2-m altitude

Biogeochemical Processes Regulating the Mobility of Uranium in Sediments

Energy Technology Data Exchange (ETDEWEB)

Belli, Keaton M.; Taillefert, Martial

2016-07-01

This book chapters reviews the latest knowledge on the biogeochemical processes regulating the mobility of uranium in sediments. It contains both data from the literature and new data from the authors.

Large- to submesoscale surface circulation and its implications on biogeochemical/biological horizontal distributions during the OUTPACE cruise (southwest Pacific)

Science.gov (United States)

Rousselet, Louise; de Verneil, Alain; Doglioli, Andrea M.; Petrenko, Anne A.; Duhamel, Solange; Maes, Christophe; Blanke, Bruno

2018-04-01

The patterns of the large-scale, meso- and submesoscale surface circulation on biogeochemical and biological distributions are examined in the western tropical South Pacific (WTSP) in the context of the OUTPACE cruise (February-April 2015). Multi-disciplinary original in situ observations were achieved along a zonal transect through the WTSP and their analysis was coupled with satellite data. The use of Lagrangian diagnostics allows for the identification of water mass pathways, mesoscale structures, and submesoscale features such as fronts. In particular, we confirmed the existence of a global wind-driven southward circulation of surface waters in the entire WTSP, using a new high-resolution altimetry-derived product, validated by in situ drifters, that includes cyclogeostrophy and Ekman components with geostrophy. The mesoscale activity is shown to be responsible for counter-intuitive water mass trajectories in two subregions: (i) the Coral Sea, with surface exchanges between the North Vanuatu Jet and the North Caledonian Jet, and (ii) around 170° W, with an eastward pathway, whereas a westward general direction dominates. Fronts and small-scale features, detected with finite-size Lyapunov exponents (FSLEs), are correlated with 25 % of surface tracer gradients, which reveals the significance of such structures in the generation of submesoscale surface gradients. Additionally, two high-frequency sampling transects of biogeochemical parameters and microorganism abundances demonstrate the influence of fronts in controlling the spatial distribution of bacteria and phytoplankton, and as a consequence the microbial community structure. All circulation scales play an important role that has to be taken into account not only when analysing the data from OUTPACE but also, more generally, for understanding the global distribution of biogeochemical components.

Tidal Marsh Outwelling of Dissolved Organic Matter and Resulting Temporal Variability in Coastal Water Optical and Biogeochemical Properties

Science.gov (United States)

Tzortziou, Maria; Neale, Patrick J.; Megonigal, J. Patrick; Butterworth, Megan; Jaffe, Rudolf; Yamashita, Youhei

2010-01-01

Coastal wetlands are highly dynamic environments at the land-ocean interface where human activities, short-term physical forcings and intense episodic events result in high biological and chemical variability. Long being recognized as among the most productive ecosystems in the world, tidally-influenced coastal marshes are hot spots of biogeochemical transformation and exchange. High temporal resolution observations that we performed in several marsh-estuarine systems of the Chesapeake Bay revealed significant variability in water optical and biogeochemical characteristics at hourly time scales, associated with tidally-driven hydrology. Water in the tidal creek draining each marsh was sampled every hour during several semi-diurnal tidal cycles using ISCO automated samplers. Measurements showed that water leaving the marsh during ebbing tide was consistently enriched in dissolved organic carbon (DOC), frequently by more than a factor of two, compared to water entering the marsh during flooding tide. Estimates of DOC fluxes showed a net DOC export from the marsh to the estuary during seasons of both low and high biomass of marsh vegetation. Chlorophyll amounts were typically lower in the water draining the marsh, compared to that entering the marsh during flooding tide, suggesting that marshes act as transformers of particulate to dissolved organic matter. Moreover, detailed optical and compositional analyses demonstrated that marshes are important sources of optically and chemically distinctive, relatively complex, high molecular weight, aromatic-rich and highly colored dissolved organic compounds. Compared to adjacent estuarine waters, marsh-exported colored dissolved organic matter (CDOM) was characterized by considerably stronger absorption (more than a factor of three in some cases), larger DOC-specific absorption, lower exponential spectral slope, larger fluorescence signal, lower fluorescence per unit absorbance, and higher fluorescence at visible wavelengths

Engineering Pseudomonas stutzeri as a biogeochemical biosensor

Science.gov (United States)

Boynton, L.; Cheng, H. Y.; Del Valle, I.; Masiello, C. A.; Silberg, J. J.

2016-12-01

Biogeochemical cycles are being drastically altered as a result of anthropogenic activities, such as the burning of fossil fuels and the industrial production of ammonia. We know microbes play a major part in these cycles, but the extent of their biogeochemical roles remains largely uncharacterized due to inadequacies with culturing and measurement. While metagenomics and other -omics methods offer ways to reconstruct microbial communities, these approaches can only give an indication of the functional roles of microbes in a community. These -omics approaches are rapidly being expanded to the point of outpacing our knowledge of functional genes, which highlights an inherent need for analytical methods that non-invasively monitor Earth's processes in real time. Here we aim to exploit synthetic biology methods in order to engineer a ubiquitous denitrifying microbe, Pseudomonas stutzeri that can act as a biosensor in soil and marine environments. By using an easily cultivated microbe that is also common in many environments, we hope to develop a tool that allows us to zoom in on specific aspects of the nitrogen cycle. In order to monitor processes occurring at the genetic level in environments that cannot be resolved with fluorescence-based methods, such as soils, we have developed a system that instead relies on gas production by engineered microbial biosensors. P. stutzeri has been successfully engineered to release a gas, methyl bromide, which can continuously and non-invasively be measured by GC-MS. Similar to using Green Fluorescent Protein, GFP, in the biological sciences, the gene controlling gas production can be linked to those involved in denitrification, thereby creating a quantifiable gas signal that is correlated with microbial activity in the soil. Synthetically engineered microbial biosensors could reveal key aspects of metabolism in soil systems and offer a tool for characterizing the scope and degree of microbial impact on major biogeochemical cycles.

In-situ high-resolution gamma-spectrometric survey of burial ground-monitoring wells

International Nuclear Information System (INIS)

Bowman, W.W.

1981-09-01

In situ high resolution gamma-ray spectrometry with an intrinsic germanium detector assembly of special design surveyed the burial ground monitoring wells to locate and identify gamma emitters that may have migrated from the burial trenches toward the water table. Gamma-ray spectra were acquired as a function of depth in each well and recorded on magnetic tape. These spectra were reduced by a series of computer programs to produce count rate versus depth profiles for natural and man-made activities. The original spectra and the profiles have been archived on magnetic tape for comparison with similar future surveys. Large amounts of man-made activities were observed in some of the burial trenches; however, below the trench bottoms, only very low but detectable amounts of 60 Co and 137 Cs were observed in eleven wells. The highest level of man-made gamma activity observed below the trench bottoms has a count rate roughly equal to that observed for uranium daughter activities which are natural to the subsoil

Small Moves, NUI. Small Moves: Beginning to Investigate Biogeochemical Exchange From the Seafloor to the Exterior of an Ice-Covered Ocean

Science.gov (United States)

German, C. R.; Boetius, A.

2017-12-01

We present results from two recent cruises, using the new Nereid Under Ice (NUI) vehicle aboard the FS Polarstern, in which we investigated biogeochemical fluxes from the deep seafloor of the Gakkel Ridge, an ultraslow spreading ridge that spans the ice-covered Arctic Ocean, and the mechanisms by which biogeochemical signals might be transferred from within the underlying ocean to the overlying Arctic ice. The scientific advances for this work progress hand in hand with technological capability. During a first cruise in 2014, our NUI-based investigations focused on photosynthetically-driven biogeochemical cycling in the uppermost water column and how to study such processes using in situ sensing immediately at and beneath the rough topography of the overlying ice-cover. For that work we relied entirely upon human-in-the-loop control of the vehicle via a single optical fiber light tether than provided real-time monitoring and control of the vehicle as it ranged laterally out under the ice up to 1km distant from the ship, conducting physical, geochemical and biological surveys. Instrumentation used for that work included multibeam mapping and imaging (digital still photographs and HD video), in situ spectroscopy to study light transmission through the ice and biogeochemical mapping of the ocean water column using a combination of CTD sensing, fluorometry and an in situ nitrate analyzer. Returning to the Arctic in 2016 we extended our exploration modes with NUI further, investigating for seafloor fluid flow at a shallow setting on the flanks of the Gakkel Ridge where the seabed rises from >4000m to movement of the ship (horizontal displacements of 1km or more) at the ice-covered ocean surface. While the existing NUI vehicle does not map directly to model payloads for future SLS missions to Europa or Enceladus it does provide for important small moves in the right direction.

The Microbial Engines That Drive Earth’s Biogeochemical Cycles

Science.gov (United States)

Falkowski, Paul G.; Fenchel, Tom; Delong, Edward F.

2008-05-01

Virtually all nonequilibrium electron transfers on Earth are driven by a set of nanobiological machines composed largely of multimeric protein complexes associated with a small number of prosthetic groups. These machines evolved exclusively in microbes early in our planet’s history yet, despite their antiquity, are highly conserved. Hence, although there is enormous genetic diversity in nature, there remains a relatively stable set of core genes coding for the major redox reactions essential for life and biogeochemical cycles. These genes created and coevolved with biogeochemical cycles and were passed from microbe to microbe primarily by horizontal gene transfer. A major challenge in the coming decades is to understand how these machines evolved, how they work, and the processes that control their activity on both molecular and planetary scales.

Characterization of mixing errors in a coupled physical biogeochemical model of the North Atlantic: implications for nonlinear estimation using Gaussian anamorphosis

Directory of Open Access Journals (Sweden)

D. Béal

2010-02-01

Full Text Available In biogeochemical models coupled to ocean circulation models, vertical mixing is an important physical process which governs the nutrient supply and the plankton residence in the euphotic layer. However, vertical mixing is often poorly represented in numerical simulations because of approximate parameterizations of sub-grid scale turbulence, wind forcing errors and other mis-represented processes such as restratification by mesoscale eddies. Getting a sufficient knowledge of the nature and structure of these errors is necessary to implement appropriate data assimilation methods and to evaluate if they can be controlled by a given observation system.

In this paper, Monte Carlo simulations are conducted to study mixing errors induced by approximate wind forcings in a three-dimensional coupled physical-biogeochemical model of the North Atlantic with a 1/4° horizontal resolution. An ensemble forecast involving 200 members is performed during the 1998 spring bloom, by prescribing perturbations of the wind forcing to generate mixing errors. The biogeochemical response is shown to be rather complex because of nonlinearities and threshold effects in the coupled model. The response of the surface phytoplankton depends on the region of interest and is particularly sensitive to the local stratification. In addition, the statistical relationships computed between the various physical and biogeochemical variables reflect the signature of the non-Gaussian behaviour of the system. It is shown that significant information on the ecosystem can be retrieved from observations of chlorophyll concentration or sea surface temperature if a simple nonlinear change of variables (anamorphosis is performed by mapping separately and locally the ensemble percentiles of the distributions of each state variable on the Gaussian percentiles. The results of idealized observational updates (performed with perfect observations and neglecting horizontal correlations

A soil-landscape framework for understanding spatial and temporal variability in biogeochemical processes in catchments

Science.gov (United States)

McGuire, K. J.; Bailey, S. W.; Ross, D. S.

2017-12-01

Heterogeneity in biophysical properties within catchments challenges how we quantify and characterize biogeochemical processes and interpret catchment outputs. Interactions between the spatiotemporal variability of hydrological states and fluxes and soil development can spatially structure catchments, leading to a framework for understanding patterns in biogeochemical processes. In an upland, glaciated landscape at the Hubbard Brook Experimental Forest (HBEF) in New Hampshire, USA, we are embracing the structure and organization of soils to understand the spatial relations between runoff production zones, distinct soil-biogeochemical environments, and solute retention and release. This presentation will use observations from the HBEF to demonstrate that a soil-landscape framework is essential in understanding the spatial and temporal variability of biogeochemical processes in this catchment. Specific examples will include how laterally developed soils reveal the location of active runoff production zones and lead to gradients in primary mineral dissolution and the distribution of weathering products along hillslopes. Soil development patterns also highlight potential carbon and nitrogen cycling hotspots, differentiate acidic conditions, and affect the regulation of surface water quality. Overall, this work demonstrates the importance of understanding the landscape-level structural organization of soils in characterizing the variation and extent of biogeochemical processes that occur in catchments.

Quantifying topographic and saturation frequency controls on magnitude and duration of hot moments in contrasting biogeochemical hotspots

Science.gov (United States)

Duncan, J. M.; Band, L. E.

2010-12-01

We combine high frequency field measurements and terrain analysis to assess the combined effects of topography and wetting frequency on nutrient processing for different landscape patches. This work is conducted in Pond Branch, a 40 ha reference catchment of the Baltimore Ecosystem Study LTER site. Pond Branch exhibits regular summer peaks in nitrate loads, the majority of which is exported at baseflow suggesting that non-storm periods may play an important role in the nutrient dynamics at this site. Terrain analysis of a high resolution LiDAR DEM enables identification of hotspots of solute transport, retention and transformation. On hillslopes, breaks in slope or small depressions along dominant flowpaths can have important implications for nutrient cycling and export. In riparian zones, secondary channels and riparian low spots are critical locations for the hydrological and biogeochemical response of the watershed. Furthermore, high frequency measurements of soil moisture and oxygen levels in these locations reveal that the magnitude and frequency of precipitation events is an important control on hotspot efficacy. Implications of using coarser resolution DEMs that do not capture this topographic variability are discussed.

Surrogate-Based Optimization of Biogeochemical Transport Models

Science.gov (United States)

Prieß, Malte; Slawig, Thomas

2010-09-01

First approaches towards a surrogate-based optimization method for a one-dimensional marine biogeochemical model of NPZD type are presented. The model, developed by Oschlies and Garcon [1], simulates the distribution of nitrogen, phytoplankton, zooplankton and detritus in a water column and is driven by ocean circulation data. A key issue is to minimize the misfit between the model output and given observational data. Our aim is to reduce the overall optimization cost avoiding expensive function and derivative evaluations by using a surrogate model replacing the high-fidelity model in focus. This in particular becomes important for more complex three-dimensional models. We analyse a coarsening in the discretization of the model equations as one way to create such a surrogate. Here the numerical stability crucially depends upon the discrete stepsize in time and space and the biochemical terms. We show that for given model parameters the level of grid coarsening can be choosen accordingly yielding a stable and satisfactory surrogate. As one example of a surrogate-based optimization method we present results of the Aggressive Space Mapping technique (developed by John W. Bandler [2, 3]) applied to the optimization of this one-dimensional biogeochemical transport model.

Linking Chaotic Advection with Subsurface Biogeochemical Processes

Science.gov (United States)

Mays, D. C.; Freedman, V. L.; White, S. K.; Fang, Y.; Neupauer, R.

2017-12-01

This work investigates the extent to which groundwater flow kinematics drive subsurface biogeochemical processes. In terms of groundwater flow kinematics, we consider chaotic advection, whose essential ingredient is stretching and folding of plumes. Chaotic advection is appealing within the context of groundwater remediation because it has been shown to optimize plume spreading in the laminar flows characteristic of aquifers. In terms of subsurface biogeochemical processes, we consider an existing model for microbially-mediated reduction of relatively mobile uranium(VI) to relatively immobile uranium(IV) following injection of acetate into a floodplain aquifer beneath a former uranium mill in Rifle, Colorado. This model has been implemented in the reactive transport code eSTOMP, the massively parallel version of STOMP (Subsurface Transport Over Multiple Phases). This presentation will report preliminary numerical simulations in which the hydraulic boundary conditions in the eSTOMP model are manipulated to simulate chaotic advection resulting from engineered injection and extraction of water through a manifold of wells surrounding the plume of injected acetate. This approach provides an avenue to simulate the impact of chaotic advection within the existing framework of the eSTOMP code.

The effect of biogeochemical processes on pH

NARCIS (Netherlands)

Soetaert, K.E.R.; Hofmann, A.F.; Middelburg, J.J.; Meysman, F.J.R.; Greenwood, J.E.

2007-01-01

The impact of biogeochemical and physical processes on aquatic chemistry is usually expressed in terms of alkalinity. Here we show how to directly calculate the effect of single processes on pH. Under the assumptions of equilibrium and electroneutrality, the rate of change of pH can be calculated as

[Ammonia-oxidizing archaea and their important roles in nitrogen biogeochemical cycling: a review].

Science.gov (United States)

Liu, Jing-Jing; Wu, Wei-Xiang; Ding, Ying; Shi, De-Zhi; Chen, Ying-Xu

2010-08-01

As the first step of nitrification, ammonia oxidation is the key process in global nitrogen biogeochemical cycling. So far, the autotrophic ammonia-oxidizing bacteria (AOB) in the beta- and gamma-subgroups of proteobacteria have been considered as the most important contributors to ammonia oxidation, but the recent researches indicated that ammonia-oxidizing archaea (AOA) are widely distributed in various kinds of ecosystems and quantitatively predominant, playing important roles in the global nitrogen biogeochemical cycling. This paper reviewed the morphological, physiological, and ecological characteristics and the molecular phylogenies of AOA, and compared and analyzed the differences and similarities of the ammonia monooxygenase (AMO) and its encoding genes between AOA and AOB. In addition, the potential significant roles of AOA in nitrogen biogeochemical cycling in aquatic and terrestrial ecosystems were summarized, and the future research directions of AOA in applied ecology and environmental protection were put forward.

Comparison of the large-scale radon risk map for southern Belgium with results of high resolution surveys

International Nuclear Information System (INIS)

Zhu, H.-C.; Charlet, J.M.; Poffijn, A.

2000-01-01

A large-scale radon survey consisting of long-term measurements in about 5200 singe-family houses in the southern part of Belgium was carried from 1995 to 1999. A radon risk map for the region was produced using geostatistical and GIS approaches. Some communes or villages situated within high risk areas were chosen for detailed surveys. A high resolution radon survey with about 330 measurements was performed in half part of the commune of Burg-Reuland. Comparison of radon maps on quite different scales shows that the general Rn risk map has similar pattern as the radon map for the detailed study area. Another detailed radon survey in the village of Hatrival, situated in a high radon area, found very high proportion of houses with elevated radon concentrations. The results of this detailed survey are comparable to the expectation for high risk areas on the large-scale radon risk map. The good correspondence between the findings of the general risk map and the analysis of the limited detailed surveys, suggests that the large-scale radon risk map is likely reliable. (author)

Ecohydrological Interfaces as Dynamic Hotspots of Biogeochemical Cycling

Science.gov (United States)

Krause, Stefan; Lewandowski, Joerg; Hannah, David; McDonald, Karlie; Folegot, Silvia; Baranov, Victor

2016-04-01

Ecohydrological interfaces, represent the boundaries between water-dependent ecosystems that can alter substantially the fluxes of energy and matter. There is still a critical gap of understanding the organisational principles of the drivers and controls of spatially and temporally variable ecohydrological interface functions. This knowledge gap limits our capacity to efficiently quantify, predict and manage the services provided by complex ecosystems. Many ecohydrological interfaces are characterized by step changes in microbial metabolic activity, steep redox gradients and often even thermodynamic phase shifts, for instance at the interfaces between atmosphere and water or soil matrix and macro-pores interfaces. This paper integrates investigations from point scale laboratory microcosm experiments with reach and subcatchment scale tracer experiments and numerical modeling studies to elaborate similarities in the drivers and controls that constitute the enhanced biogeochemical activity of different types of ecohydrologica interfaces across a range of spatial and temporal scales. We therefore combine smart metabolic activity tracers to quantify the impact of bioturbating benthic fauna onto ecosystem respiration and oxygen consumption and investigate at larger scale, how microbial metabolic activity and carbon turnover at the water-sediment interface are controlled by sediment physical and chemical properties as well as water temperatures. Numerical modeling confirmed that experimentally identified hotspots of streambed biogeochemical cycling were controlled by patterns of physical properties such as hydraulic conductivities or bioavailability of organic matter, impacting on residence time distributions and hence reaction times. In contrast to previous research, our investigations thus confirmed that small-scale variability of physical and chemical interface properties had a major impact on biogeochemical processing at the investigated ecohydrological interfaces

Mangrove forests: a potent nexus of coastal biogeochemical cycling

Science.gov (United States)

Barr, J. G.; Fuentes, J. D.; Shoemaker, B.; O'Halloran, T. L.; Lin, G., Sr.; Engel, V. C.

2014-12-01

Mangrove forests cover just 0.1% of the Earth's terrestrial surface, yet they provide a disproportionate source (~10 % globally) of terrestrially derived, refractory dissolved organic carbon to the oceans. Mangrove forests are biogeochemical reactors that convert biomass into dissolved organic and inorganic carbon at unusually high rates, and many studies recognize the value of mangrove ecosystems for the substantial amounts of soil carbon storage they produce. However, questions remain as to how mangrove forest ecosystem services should be valuated and quantified. Therefore, this study addresses several objectives. First, we demonstrate that seasonal and annual net ecosystem carbon exchange in three selected mangrove forests, derived from long-term eddy covariance measurements, represent key quantities in defining the magnitude of biogeochemical cycling and together with other information on carbon cycle parameters serves as a proxy to estimate ecosystem services. Second, we model ecosystem productivity across the mangrove forests of Everglades National Park and southern China by relating net ecosystem exchange values to remote sensing data. Finally, we develop a carbon budget for the mangrove forests in the Everglades National Park for the purposes of demonstrating that these forests and adjacent estuaries are sites of intense biogeochemical cycling. One conclusion from this study is that much of the carbon entering from the atmosphere as net ecosystem exchange (~1000 g C m-2 yr-1) is not retained in the net ecosystem carbon balance. Instead, a substantial fraction of the carbon entering the system as net ecosystem exchange is ultimately exported to the oceans or outgassed as reaction products within the adjacent estuary.

Biogeochemical response to widespread anoxia in the past ocean

NARCIS (Netherlands)

Ruvalcaba Baroni, I.

2015-01-01

Oxygen is a key element for life on earth. Oxygen concentrations in the ocean vary greatly in space and time. These changes are regulated by various physical and biogeochemical processes, such as primary productivity, sea surface temperatures and ocean circulation. In the geological past, several

Hyporheic zone as a bioreactor: sediment heterogeneity influencing biogeochemical processes

Science.gov (United States)

Perujo, Nuria; Romani, Anna M.; Sanchez-Vila, Xavier

2017-04-01

Mediterranean fluvial systems are characterized by frequent periods of low flow or even drought. During low flow periods, water from wastewater treatment plants (WWTPs) is proportionally large in fluvial systems. River water might be vertically transported through the hyporheic zone, and then porous medium acts as a complementary treatment system since, as water infiltrates, a suite of biogeochemical processes occurs. Subsurface sediment heterogeneity plays an important role since it influences the interstitial fluxes of the medium and drives biomass growing, determining biogeochemical reactions. In this study, WWTP water was continuously infiltrated for 3 months through two porous medium tanks: one consisting of 40 cm of fine sediment (homogeneous); and another comprised of two layers of different grain size sediments (heterogeneous), 20 cm of coarse sediment in the upper part and 20 cm of fine one in the bottom. Several hydrological, physicochemical and biological parameters were measured periodically (weekly at the start of the experiment and biweekly at the end). Analysed parameters include dissolved nitrogen, phosphorus, organic carbon, and oxygen all measured at the surface, and at 5, 20 and 40 cm depth. Variations in hydraulic conductivity with time were evaluated. Sediment samples were also analysed at three depths (surface, 20 and 40 cm) to determine bacterial density, chlorophyll content, extracellular polymeric substances, and biofilm function (extracellular enzyme activities and carbon substrate utilization profiles). Preliminary results suggest hydraulic conductivity to be the main driver of the differences in the biogeochemical processes occurring in the subsurface. At the heterogeneous tank, a low nutrient reduction throughout the whole medium is measured. In this medium, high hydraulic conductivity allows for a large amount of infiltrating water, but with a small residence time. Since some biological processes are largely time-dependent, small water

High-resolution S-wave reflection survey in a linear depression; Senjo kubochi ni okeru kobunkaino S ha hanshaho tansa

Energy Technology Data Exchange (ETDEWEB)

Inazaki, T [Geological Survey of Japan, Tsukuba (Japan); Sasaki, Y [Kyushu Regional Construction Bureau, Fukuoka (Japan)

1997-10-22

An attempt was made to apply a method combining the high-resolution S-wave reflection survey with boring to a fault survey at the Kuju town, Oita Prefecture. The investigation area has a linear depression area as small as about 600 m from east to west and about 100 m from north to south surround by mountain slopes. The boundary section with mountain peaks at the north ridge of the depression area is linear, and existence of a southward falling normal fault has been indicated. The seismic investigation has employed an artificial plank hammering method, and the derived data were processed by using the processing software, Vista for Windows. The Bin interval was 25 cm, the S-wave velocity ranged from 100 to 150 m/s, and the spatial resolution was estimated at several ten centimeters or less. The resolution is thought sufficient for assessing the fault location and displacement. The acquired depth cross sections presented distinct structural discontinuity, from which the fault locations were estimated. However, for displacements in the base bed and upper beds, the reflected waves fell into disorder at the faults, having made a detailed assessment difficult. 4 figs., 1 tab.

Repeated 1-cm Resolution Topographic and 2.5-mm Resolution Photomosiac Surveys of Benthic Communities and Fine Scale Bedforms in Monterey Canyon

Science.gov (United States)

Caress, D. W.; Hobson, B.; Thomas, H. J.; Henthorn, R.; Martin, E. J.; Bird, L.; Risi, M.; Troni, G.; Paull, C. K.; Rock, S.; Padial, J. A.; Hammond, M. M.

2014-12-01

The Monterey Bay Aquarium Research Institute has developed a low altitude, ROV-based seafloor mapping system that combines lidar laser ranging, multibeam sonar, and stereo photographic imagery. When operated at a 3-m altitude, this system maps seafloor topography with a 1-cm lateral resolution and simultaneously collects 2.5-mm resolution color photography. We have twice mapped an 80-m by 80-m area of a chemosynthetic clam community located at 2850-m depth in the Monterey Canyon axis. Both the topography and the photomosaics resolve changes in the clam community over a six-month interval. Many individual animals have moved, and tracks of those animals are visible in the lidar topography. No other changes in the seafloor at this site can be discerned. We have also performed single surveys of bedforms and scours at both 1850-m and 2850-m depths in Monterey Canyon. The highest resolution bathymetry data are collected using a 3DatDepth SL1 lidar laser scanner. This system has a 30° field of view and ranges continuously, achieving a 1 cm sounding spacing at a 3 m altitude and 0.3 m/s speed. Bathymetry data are also collected using a 400-kHz Reson 7125 multibeam sonar. This configuration produces 512 beams across a 135° wide swath; each beam has a 0.5° acrosstrack by 1.0° alongtrack angular width. At a 3-m altitude, the nadir beams have a 2.5 cm acrosstrack and 5 cm alongtrack footprint. Dual Prosilica GX1920 2.4 Mpixel color cameras provide color stereo photography of the seafloor. Illumination is provided by dual xenon strobes. The camera housings have been fitted with corrective optics achieving a 90° field of view with less than 1% distortion. At a 3-m altitude the raw image pixels have a 2.5 mm resolution. Position and attitude data are provided by a Kearfott SeaDevil Inertial Navigation System (INS) integrated with a 300 kHz Teledyne RD Instruments Doppler velocity log (DVL). A separate Paroscientific pressure sensor is mounted adjacent to the INS. The INS

Deep-Sea Microbes: Linking Biogeochemical Rates to -Omics Approaches

Science.gov (United States)

Herndl, G. J.; Sintes, E.; Bayer, B.; Bergauer, K.; Amano, C.; Hansman, R.; Garcia, J.; Reinthaler, T.

2016-02-01

Over the past decade substantial progress has been made in determining deep ocean microbial activity and resolving some of the enigmas in understanding the deep ocean carbon flux. Also, metagenomics approaches have shed light onto the dark ocean's microbes but linking -omics approaches to biogeochemical rate measurements are generally rare in microbial oceanography and even more so for the deep ocean. In this presentation, we will show by combining metagenomics, -proteomics and biogeochemical rate measurements on the bulk and single-cell level that deep-sea microbes exhibit characteristics of generalists with a large genome repertoire, versatile in utilizing substrate as revealed by metaproteomics. This is in striking contrast with the apparently rather uniform dissolved organic matter pool in the deep ocean. Combining the different -omics approaches with metabolic rate measurements, we will highlight some major inconsistencies and enigmas in our understanding of the carbon cycling and microbial food web structure in the dark ocean.

Tree survey and allometric models for tiger bush in northern Senegal and comparison with tree parameters derived from high resolution satellite data

DEFF Research Database (Denmark)

Rasmussen, Mads Olander; Goettsche, Frank-M.; Diop, Doudou

2011-01-01

A tree survey and an analysis of high resolution satellite data were performed to characterise the woody vegetation within a 10 x 10 km(2) area around a site located close to the town of Dahra in the semiarid northern part of Senegal. The surveyed parameters were tree species, height, tree crown...

Greenland's glacial fjords and their role in regional biogeochemical dynamics.

Science.gov (United States)

Crosby, J.; Arndt, S.

2017-12-01

Greenland's coastal fjords serve as important pathways that connect the Greenland Ice Sheet (GrIS) and the surrounding oceans. They export seasonal glacial meltwater whilst being significant sites of primary production. These fjords are home to some of the most productive ecosystems in the world and possess high socio-economic value via fisheries. A growing number of studies have proposed the GrIS as an underappreciated yet significant source of nutrients to surrounding oceans. Acting as both transfer routes and sinks for glacial nutrient export, fjords have the potential to act as significant biogeochemical processors, yet remain underexplored. Critically, an understanding of the quantitative contribution of fjords to carbon and nutrient budgets is lacking, with large uncertainties associated with limited availability of field data and the lack of robust upscaling approaches. To close this knowledge gap we developed a coupled 2D physical-biogeochemical model of the Godthåbsfjord system, a sub-Arctic sill fjord in southwest Greenland, to quantitatively assess the impact of nutrients exported from the GrIS on fjord primary productivity and biogeochemical dynamics. Glacial meltwater is found to be a key driver of fjord-scale circulation patterns, whilst tracer simulations reveal the relative nutrient contributions from meltwater-driven upwelling and meltwater export from the GrIS. Hydrodynamic circulation patterns and freshwater transit times are explored to provide a first understanding of the glacier-fjord-ocean continuum, demonstrating the complex pattern of carbon and nutrient cycling at this critical land-ocean interface.

Biogeochemical Reactions Under Simulated Europa Ocean Conditions

Science.gov (United States)

Amashukeli, X.; Connon, S. A.; Gleeson, D. F.; Kowalczyk, R. S.; Pappalardo, R. T.

2007-12-01

Galileo data have demonstrated the probable presence of a liquid water ocean on Europa, and existence of salts and carbon dioxide in the satellite's surface ice (e.g., Carr et al., 1998; McCord et al., 1999, Pappalardo et al., 1999; Kivelson et al., 2000). Subsequently, the discovery of chemical signatures of extinct or extant life in Europa's ocean and on its surface became a distinct possibility. Moreover, understanding of Europa's potential habitability is now one of the major goals of the Europa Orbiter Flagship mission. It is likely, that in the early stages of Europa's ocean formation, moderately alkaline oceanic sulfate-carbonate species and a magnetite-silicate mantel could have participated in low-temperature biogeochemical sulfur, iron and carbon cycles facilitated by primitive organisms (Zolotov and Shock, 2004). If periodic supplies of fresh rock and sulfate-carbonate ions are available in Europa's ocean, then an exciting prospect exists that life may be present in Europa's ocean today. In our laboratory, we began the study of the plausible biogeochemical reactions under conditions appropriate to Europa's ocean using barophilic psychrophilic organisms that thrive under anaerobic conditions. In the near absence of abiotic synthetic pathways due to low Europa's temperatures, the biotic synthesis may present a viable opportunity for the formation of the organic and inorganic compounds under these extreme conditions. This work is independent of assumptions regarding hydrothermal vents at Europa's ocean floor or surface-derived oxidant sources. For our studies, we have fabricated a high-pressure (5,000 psi) reaction vessel that simulates aqueous conditions on Europa. We were also successful at reviving barophilic psychrophilic strains of Shewanella bacterium, which serve as test organisms in this investigation. Currently, facultative barophilic psychrophilic stains of Shewanella are grown in the presence of ferric food source; the strains exhibiting iron

GASS: THE PARKES GALACTIC ALL-SKY SURVEY. I. SURVEY DESCRIPTION, GOALS, AND INITIAL DATA RELEASE

International Nuclear Information System (INIS)

McClure-Griffiths, N. M.; Calabretta, M. R.; Ford, H. Alyson; Newton-McGee, K.

2009-01-01

The Parkes Galactic All-Sky Survey (GASS) is a survey of Galactic atomic hydrogen (H I) emission in the Southern sky covering declinations δ ≤ 1 0 using the Parkes Radio Telescope. The survey covers 2π steradians with an effective angular resolution of ∼16', at a velocity resolution of 1.0 km s -1 , and with an rms brightness temperature noise of 57 mK. GASS is the most sensitive, highest angular resolution survey of Galactic H I emission ever made in the Southern sky. In this paper, we outline the survey goals, describe the observations and data analysis, and present the first-stage data release. The data product is a single cube at full resolution, not corrected for stray radiation. Spectra from the survey and other data products are publicly available online.

Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes: Targeted quantification of functional enzyme dynamics

Energy Technology Data Exchange (ETDEWEB)

Li, Minjing [School of Environmental Studies, China University of Geosciences, Wuhan 430074 People' s Republic of China; Gao, Yuqian [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Qian, Wei-Jun [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Shi, Liang [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Liu, Yuanyuan [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Nelson, William C. [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Nicora, Carrie D. [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Resch, Charles T. [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Thompson, Christopher [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Yan, Sen [School of Environmental Studies, China University of Geosciences, Wuhan 430074 People' s Republic of China; Fredrickson, James K. [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Zachara, John M. [Pacific Northwest National Laboratory, Richland, WA 99354 USA; Liu, Chongxuan [Pacific Northwest National Laboratory, Richland, WA 99354 USA; School of Environmental Science and Engineering, Southern University of Science and Technology, Shenzhen 518055 People' s Republic of China

2017-07-13

Microbially mediated biogeochemical processes are catalyzed by enzymes that control the transformation of carbon, nitrogen, and other elements in environment. The dynamic linkage between enzymes and biogeochemical species transformation has, however, rarely been investigated because of the lack of analytical approaches to efficiently and reliably quantify enzymes and their dynamics in soils and sediments. Herein, we developed a signature peptide-based technique for sensitively quantifying dissimilatory and assimilatory enzymes using nitrate-reducing enzymes in a hyporheic zone sediment as an example. Moreover, the measured changes in enzyme concentration were found to correlate with the nitrate reduction rate in a way different from that inferred from biogeochemical models based on biomass or functional genes as surrogates for functional enzymes. This phenomenon has important implications for understanding and modeling the dynamics of microbial community functions and biogeochemical processes in environments. Our results also demonstrate the importance of enzyme quantification for the identification and interrogation of those biogeochemical processes with low metabolite concentrations as a result of faster enzyme-catalyzed consumption of metabolites than their production. The dynamic enzyme behaviors provide a basis for the development of enzyme-based models to describe the relationship between the microbial community and biogeochemical processes.

Biogeochemical processes on tree islands in the greater everglades: Initiating a new paradigm

Science.gov (United States)

Wetzel, P.R.; Sklar, Fred H.; Coronado, C.A.; Troxler, T.G.; Krupa, S.L.; Sullivan, P.L.; Ewe, S.; Price, R.M.; Newman, S.; Orem, W.H.

2011-01-01

Scientists' understanding of the role of tree islands in the Everglades has evolved from a plant community of minor biogeochemical importance to a plant community recognized as the driving force for localized phosphorus accumulation within the landscape. Results from this review suggest that tree transpiration, nutrient infiltration from the soil surface, and groundwater flow create a soil zone of confluence where nutrients and salts accumulate under the head of a tree island during dry periods. Results also suggest accumulated salts and nutrients are flushed downstream by regional water flows during wet periods. That trees modulate their environment to create biogeochemical hot spots and strong nutrient gradients is a significant ecological paradigm shift in the understanding of the biogeochemical processes in the Everglades. In terms of island sustainability, this new paradigm suggests the need for distinct dry-wet cycles as well as a hydrologic regime that supports tree survival. Restoration of historic tree islands needs further investigation but the creation of functional tree islands is promising. Copyright ?? 2011 Taylor & Francis Group, LLC.

Do we miss the hot spots? – The use of very high resolution aerial photographs to quantify carbon fluxes in peatlands

Directory of Open Access Journals (Sweden)

T. Becker

2008-10-01

Full Text Available Accurate determination of carbon balances in heterogeneous ecosystems often requires the extrapolation of point based measurements. The ground resolution (pixel size of the extrapolation base, e.g. a land-cover map, might thus influence the calculated carbon balance, in particular if biogeochemical hot spots are small in size. In this paper, we test the effects of varying ground resolution on the calculated carbon balance of a boreal peatland consisting of hummocks (dry, lawns (intermediate and flarks (wet surfaces. The generalizations in lower resolution imagery led to biased area estimates for individual micro-site types. While areas of lawns and hummocks were stable below a threshold resolution of ~60 cm, the maximum of the flark area was located at resolutions below 25 cm and was then decreasing with coarsening resolution. Using a resolution of 100 cm instead of 6 cm led to an overestimation of total CO₂ uptake of the studied peatland area (approximately 14 600 m² of ~5% and an underestimation of total CH₄ emission of ~6%. To accurately determine the surface area of scattered and small-sized micro-site types in heterogeneous ecosystems (e.g. flarks in peatlands, a minimum ground resolution appears necessary. In our case this leads to a recommended resolution of 25 cm, which can be derived by conventional airborne imagery. The usage of high resolution imagery from commercial satellites, e.g. Quickbird, however, is likely to underestimate the surface area of biogeochemical hot spots. It is important to note that the observed resolution effect on the carbon balance estimates can be much stronger for other ecosystems than for the investigated peatland. In the investigated peatland the relative hot spot area of the flarks is very small and their hot spot characteristics with respect to CH₄ and CO₂ fluxes is rather modest.

Diel biogeochemical processes in terrestrial waters

Science.gov (United States)

Nimick, David A.; Gammons, Christopher H.

2011-01-01

Many biogeochemical processes in rivers and lakes respond to the solar photocycle and produce persistent patterns of measureable phenomena that exhibit a day–night, or 24-h, cycle. Despite a large body of recent literature, the mechanisms responsible for these diel fluctuations are widely debated, with a growing consensus that combinations of physical, chemical, and biological processes are involved. These processes include streamflow variation, photosynthesis and respiration, plant assimilation, and reactions involving photochemistry, adsorption and desorption, and mineral precipitation and dissolution. Diel changes in streamflow and water properties such as temperature, pH, and dissolved oxygen concentration have been widely recognized, and recently, diel studies have focused more widely by considering other constituents such as dissolved and particulate trace metals, metalloids, rare earth elements, mercury, organic matter, dissolved inorganic carbon (DIC), and nutrients. The details of many diel processes are being studied using stable isotopes, which also can exhibit diel cycles in response to microbial metabolism, photosynthesis and respiration, or changes in phase, speciation, or redox state. In addition, secondary effects that diel cycles might have, for example, on biota or in the hyporheic zone are beginning to be considered.This special issue is composed primarily of papers presented at the topical session “Diurnal Biogeochemical Processes in Rivers, Lakes, and Shallow Groundwater” held at the annual meeting of the Geological Society of America in October 2009 in Portland, Oregon. This session was organized because many of the growing number of diel studies have addressed just a small part of the full range of diel cycling phenomena found in rivers and lakes. This limited focus is understandable because (1) fundamental aspects of many diel processes are poorly understood and require detailed study, (2) the interests and expertise of individual

Predictive Understanding of Mountainous Watershed Hydro-Biogeochemical Function and Response to Perturbations

Science.gov (United States)

Hubbard, S. S.; Williams, K. H.; Agarwal, D.; Banfield, J. F.; Beller, H. R.; Bouskill, N.; Brodie, E.; Maxwell, R. M.; Nico, P. S.; Steefel, C. I.; Steltzer, H.; Tokunaga, T. K.; Wainwright, H. M.; Dwivedi, D.; Newcomer, M. E.

2017-12-01

Recognizing the societal importance, vulnerability and complexity of mountainous watersheds, the `Watershed Function' project is developing a predictive understanding of how mountainous watersheds retain and release downgradient water, nutrients, carbon, and metals. In particular, the project is exploring how early snowmelt, drought, floods and other disturbances will influence mountainous watershed dynamics at seasonal to decadal timescales. Located in the 300km2 East River headwater catchment of the Upper Colorado River Basin, the project is guided by several constructs. First, the project considers the integrated role of surface and subsurface flow and biogeochemical reactions - from bedrock to the top of the vegetative canopy, from terrestrial through aquatic compartments, and from summit to receiving waters. The project takes a system-of-systems perspective, focused on developing new methods to quantify the cumulative watershed hydrobiogeochemical response to perturbations based on information from select subsystems within the watershed, each having distinct vegetation-subsurface biogeochemical-hydrological characteristics. A `scale-adaptive' modeling capability, in development using adaptive mesh refinement methods, serves as the organizing framework for the SFA. The scale-adaptive approach is intended to permit simulation of system-within-systems behavior - and aggregation of that behavior - from genome through watershed scales. This presentation will describe several early project discoveries and advances made using experimental, observational and numerical approaches. Among others, examples may include:quantiying how seasonal hydrological perturbations drive biogeochemical responses across critical zone compartments, with a focus on N and C transformations; metagenomic documentation of the spatial variability in floodplain meander microbial ecology; 3D reactive transport simulations of couped hydrological-biogeochemical behavior in the hyporheic zone; and

First high-resolution near-seafloor survey of magnetic anomalies of the South China Sea

Science.gov (United States)

Lin, J.; Xu, X.; Li, C.; Sun, Z.; Zhu, J.; Zhou, Z.; Qiu, N.

2013-12-01

We successfully conducted the first high-resolution near-seafloor magnetic survey of the Central, Southwest, and Northern Central Basins of the South China Sea (SCS) during two cruises on board Chinese R/V HaiYangLiuHao in October-November 2012 and March-April 2013, respectively. Measurements of magnetic field were made along four long survey lines, including (1) a NW-SE across-isochron profile transecting the Southwest Basin and covering all ages of the oceanic crust (Line CD); (2) a N-S across-isochron profile transecting the Central Basin (Line AB); and (3) two sub-parallel NE-SW across-isochron profiles transecting the Northern Central Basin of the SCS (Lines D and E). A three-axis magnetometer was mounted on a deep-tow vehicle, flying within 0.6 km above the seafloor. The position of the tow vehicle was provided by an ultra-short baseline navigation system along Lines D and E, while was estimated using shipboard GPS along Lines AB and CD. To investigate crustal magnetization, we first removed the International Geomagnetic Reference Field (IGRF) of 2010 from the measured magnetic data, and then downward continued the resultant magnetic field data to a horizontal plane at a water depth of 4.5 km to correct for variation due to the fishing depth of the deep-tow vehicle. Finally, we calculated magnetic anomalies at various water depths after reduction-to-the-pole corrections. We also constructed polarity reversal block (PRB) models of crustal magnetization by matching peaks and troughs of the observed magnetic field anomaly. Our analysis yielded the following results: (1) The near-bottom magnetic anomaly showed peak-to-trough amplitudes of more than 2,500 nT, which are several times of the anomaly amplitudes at the sea surface, illustrating that deep-tow measurements acquired much higher spatial resolutions. (2) The deep-tow data revealed several distinctive magnetic anomalies with wavelengths of 5-15 km and amplitudes of several hundred nT. These short

ARCHAEOLOGICAL SURVEYS ON THE GERMAN NORTH SEA COAST USING HIGH-RESOLUTION SYNTHETIC APERTURE RADAR DATA

Directory of Open Access Journals (Sweden)

M. Gade

2017-11-01

Full Text Available We show that high-resolution space-borne Synthetic Aperture Radar (SAR imagery with pixel sizes well below 1 m2 can be used to complement archaeological surveys in areas that are difficult to access. After major storm surges in the 14th and 17th centuries, vast areas on the German North Sea coast were lost to the sea. Areas of former settlements and historical land use were buried under sediments for centuries, but when the surface layer is driven away under the permanent action of wind, currents, and waves, they appear again on the Wadden Sea surface. However, the frequent flooding and erosion of the intertidal flats make any archaeological monitoring a difficult task, so that remote sensing techniques appear to be an efficient and cost-effective instrument for any archaeological surveillance of that area. Space-borne SAR images clearly show remnants of farmhouse foundations and of former systems of ditches, dating back to the 14th and to the 16th/17th centuries. In particular, the very high-resolution acquisition (staring spotlight mode of the German TerraSAR/ TanDEM-X satellites allows for the detection of various kinds of residuals of historical land use with high precision. In addition, we also investigate the capability of SARs working at lower microwave frequencies (on Radarsat-2 to complement our archaeological survey of historical cultural traces, some of which have been unknown so far.

High-resolution seismic reflection surveying with a land streamer

Science.gov (United States)

Cengiz Tapırdamaz, Mustafa; Cankurtaranlar, Ali; Ergintav, Semih; Kurt, Levent

2013-04-01

In this study, newly designed seismic reflection data acquisition array (land streamer) is utilized to image the shallow subsurface. Our acquisition system consist of 24 geophones screwed on iron plates with 2 m spacing, moving on the surface of the earth which are connected with fire hose. Completely original, 4.5 Kg weight iron plates provides satisfactory coupling. This land-streamer system enables rapid and cost effective acquisition of seismic reflection data due to its operational facilities. First test studies were performed using various seismic sources such as a mini-vibro truck, buffalo-gun and hammer. The final fieldwork was performed on a landslide area which was studied before. Data acquisition was carried out on the line that was previously measured by the seismic survey using 5 m geophone and shot spacing. This line was chosen in order to re-image known reflection patterns obtained from the previous field study. Taking penetration depth into consideration, a six-cartridge buffalo-gun was selected as a seismic source to achieve high vertical resolution. Each shot-point drilled 50 cm for gunshots to obtain high resolution source signature. In order to avoid surface waves, the offset distance between the source and the first channel was chosen to be 50 m and the shot spacing was 2 m. These acquisition parameters provided 12 folds at each CDP points. Spatial sampling interval was 1 m at the surface. The processing steps included standard stages such as gain recovery, editing, frequency filtering, CDP sorting, NMO correction, static correction and stacking. Furthermore, surface consistent residual static corrections were applied recursively to improve image quality. 2D F-K filter application was performed to suppress air and surface waves at relatively deep part of the seismic section. Results show that, this newly designed, high-resolution land seismic data acquisition equipment (land-streamer) can be successfully used to image subsurface. Likewise

A state-space Bayesian framework for estimating biogeochemical transformations using time-lapse geophysical data

Energy Technology Data Exchange (ETDEWEB)

Chen, J.; Hubbard, S.; Williams, K.; Pride, S.; Li, L.; Steefel, C.; Slater, L.

2009-04-15

We develop a state-space Bayesian framework to combine time-lapse geophysical data with other types of information for quantitative estimation of biogeochemical parameters during bioremediation. We consider characteristics of end-products of biogeochemical transformations as state vectors, which evolve under constraints of local environments through evolution equations, and consider time-lapse geophysical data as available observations, which could be linked to the state vectors through petrophysical models. We estimate the state vectors and their associated unknown parameters over time using Markov chain Monte Carlo sampling methods. To demonstrate the use of the state-space approach, we apply it to complex resistivity data collected during laboratory column biostimulation experiments that were poised to precipitate iron and zinc sulfides during sulfate reduction. We develop a petrophysical model based on sphere-shaped cells to link the sulfide precipitate properties to the time-lapse geophysical attributes and estimate volume fraction of the sulfide precipitates, fraction of the dispersed, sulfide-encrusted cells, mean radius of the aggregated clusters, and permeability over the course of the experiments. Results of the case study suggest that the developed state-space approach permits the use of geophysical datasets for providing quantitative estimates of end-product characteristics and hydrological feedbacks associated with biogeochemical transformations. Although tested here on laboratory column experiment datasets, the developed framework provides the foundation needed for quantitative field-scale estimation of biogeochemical parameters over space and time using direct, but often sparse wellbore data with indirect, but more spatially extensive geophysical datasets.

Marine and estuarine natural microbial biofilms: ecological and biogeochemical dimensions

Directory of Open Access Journals (Sweden)

O. Roger Anderson

2016-08-01

Full Text Available Marine and estuarine microbial biofilms are ubiquitously distributed worldwide and are increasingly of interest in basic and applied sciences because of their unique structural and functional features that make them remarkably different from the biota in the plankton. This is a review of some current scientific knowledge of naturally occurring microbial marine and estuarine biofilms including prokaryotic and microeukaryotic biota, but excluding research specifically on engineering and applied aspects of biofilms such as biofouling. Because the microbial communities including bacteria and protists are integral to the fundamental ecological and biogeochemical processes that support biofilm communities, particular attention is given to the structural and ecological aspects of microbial biofilm formation, succession, and maturation, as well as the dynamics of the interactions of the microbiota in biofilms. The intent is to highlight current state of scientific knowledge and possible avenues of future productive research, especially focusing on the ecological and biogeochemical dimensions.

Projecting the long-term biogeochemical impacts of a diverse agroforestry system in the Midwest

Science.gov (United States)

Wolz, K. J.; DeLucia, E. H.; Paul, R. F.

2014-12-01

Annual, monoculture cropping systems have become the standard agricultural model in the Midwestern US. Unintended consequences of these systems include surface and groundwater pollution, greenhouse gas emissions, loss of biodiversity, and soil erosion. Diverse agroforestry (DA) systems dominated by fruit and nut trees/shrubs have been proposed as an agricultural model for the Midwestern US that can restore ecosystem services while simultaneously providing economically viable and industrially relevant staple food crops. A DA system including six species of fruit and nut crops was established on long-time conventional agricultural land at the University of Illinois at Urbana-Champaign in 2012, with the conventional corn-soybean rotation (CSR) as a control. Initial field measurements of the nitrogen and water cycles during the first two years of transition have indicated a significant decrease in N losses and modification of the seasonal evapotranspiration (ET) pattern. While these early results suggest that the land use transition from CSR to DA can have positive biogeochemical consequences, models must be utilized to make long-term biogeochemical projections in agroforestry systems. Initial field measurements of plant phenology, net N2O flux, nitrate leaching, soil respiration, and soil moisture were used to parameterize the DA system within the DayCENT biogeochemical model as the "savanna" ecosystem type. The model was validated with an independent subset of field measurements and then run to project biogeochemical cycling in the DA system for 25 years past establishment. Model results show that N losses via N2O emission or nitrate leaching reach a minimum within the first 5 years and then maintain this tight cycle into the future. While early ET field measurements revealed similar magnitudes between the DA and CSR systems, modeled ET continued to increase for the DA system throughout the projected time since the trees would continue to grow larger. These modeling

Application of a hybrid multiscale approach to simulate hydrologic and biogeochemical processes in the river-groundwater interaction zone.

Energy Technology Data Exchange (ETDEWEB)

Hammond, Glenn Edward; Yang, Xiaofan; Song, Xuehang; Song, Hyun-Seob; Hou, Zhangshuan; Chen, Xingyuan; Liu, Yuanyuan; Scheibe, Tim

2017-03-01

The groundwater-surface water interaction zone (GSIZ) plays an important role in riverine and watershed ecosystems as the exchange of waters of variable composition and temperature (hydrologic exchange flows) stimulate microbial activity and associated biogeochemical reactions. Variable temporal and spatial scales of hydrologic exchange flows, heterogeneity of the subsurface environment, and complexity of biogeochemical reaction networks in the GSIZ present challenges to incorporation of fundamental process representations and model parameterization across a range of spatial scales (e.g. from pore-scale to field scale). This paper presents a novel hybrid multiscale simulation approach that couples hydrologic-biogeochemical (HBGC) processes between two distinct length scales of interest.

Ecosystem services and biogeochemical cycles on a global scale: valuation of water, carbon and nitrogen processes

International Nuclear Information System (INIS)

Watanabe, Marcos D.B.; Ortega, Enrique

2011-01-01

Ecosystem services (ES) are provided by healthy ecosystems and are fundamental to support human life. However, natural systems have been degraded all over the world and the process of degradation is partially attributed to the lack of knowledge regarding the economic benefits associated with ES, which usually are not captured in the market. To valuate ES without using conventional approaches, such as the human's willingness-to-pay for ecosystem goods and services, this paper uses a different method based on Energy Systems Theory to estimate prices for biogeochemical flows that affect ecosystem services by considering their emergy content converted to equivalent monetary terms. Ecosystem services related to water, carbon and nitrogen biogeochemical flows were assessed since they are connected to a range of final ecosystem services including climate regulation, hydrological regulation, food production, soil formation and others. Results in this paper indicate that aquifer recharge, groundwater flow, carbon dioxide sequestration, methane emission, biological nitrogen fixation, nitrous oxide emission and nitrogen leaching/runoff are the most critical biogeochemical flows in terrestrial systems. Moreover, monetary values related to biogeochemical flows on a global scale could provide important information for policymakers concerned with payment mechanisms for ecosystem services and costs of greenhouse gas emissions.

CMS: Simulated Physical-Biogeochemical Data, SABGOM Model, Gulf of Mexico, 2005-2010

Data.gov (United States)

National Aeronautics and Space Administration — This dataset contains monthly mean ocean surface physical and biogeochemical data for the Gulf of Mexico simulated by the South Atlantic Bight and Gulf of Mexico...

Subsurface Biogeochemical Research FY11 Second Quarter Performance Measure

Energy Technology Data Exchange (ETDEWEB)

Scheibe, Timothy D.

2011-03-31

The Subsurface Biogeochemical Research (SBR) Long Term Measure for 2011 under the Performance Assessment Rating Tool (PART) measure is to "Refine subsurface transport models by developing computational methods to link important processes impacting contaminant transport at smaller scales to the field scale." The second quarter performance measure is to "Provide a report on computational methods linking genome-enabled understanding of microbial metabolism with reactive transport models to describe processes impacting contaminant transport in the subsurface." Microorganisms such as bacteria are by definition small (typically on the order of a micron in size), and their behavior is controlled by their local biogeochemical environment (typically within a single pore or a biofilm on a grain surface, on the order of tens of microns in size). However, their metabolic activity exerts strong influence on the transport and fate of groundwater contaminants of significant concern at DOE sites, in contaminant plumes with spatial extents of meters to kilometers. This report describes progress and key findings from research aimed at integrating models of microbial metabolism based on genomic information (small scale) with models of contaminant fate and transport in aquifers (field scale).

Using geochemical indicators to distinguish high biogeochemical activity in floodplain soils and sediments

Energy Technology Data Exchange (ETDEWEB)

Kenwell, Amy [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Navarre-Sitchler, Alexis, E-mail: asitchle@mines.edu [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Prugue, Rodrigo [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Spear, John R. [Department of Civil and Environmental Engineering, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Hering, Amanda S. [Department of Applied Mathematics and Statistics, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Maxwell, Reed M. [Hydrologic Sciences and Engineering Program, Colorado School of Mines, 1500 Illinois St., Golden, CO 80401 (United States); Carroll, Rosemary W.H. [Desert Research Institute, Division of Hydrologic Sciences, 2215 Raggio Parkway, Reno, NV 89512 (United States); Williams, Kenneth H. [Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States)

2016-09-01

A better understanding of how microbial communities interact with their surroundings in physically and chemically heterogeneous subsurface environments will lead to improved quantification of biogeochemical reactions and associated nutrient cycling. This study develops a methodology to predict potential elevated rates of biogeochemical activity (microbial “hotspots”) in subsurface environments by correlating microbial DNA and aspects of the community structure with the spatial distribution of geochemical indicators in subsurface sediments. Multiple linear regression models of simulated precipitation leachate, HCl and hydroxylamine extractable iron and manganese, total organic carbon (TOC), and microbial community structure were used to identify sample characteristics indicative of biogeochemical hotspots within fluvially-derived aquifer sediments and overlying soils. The method has been applied to (a) alluvial materials collected at a former uranium mill site near Rifle, Colorado and (b) relatively undisturbed floodplain deposits (soils and sediments) collected along the East River near Crested Butte, Colorado. At Rifle, 16 alluvial samples were taken from 8 sediment cores, and at the East River, 46 soil/sediment samples were collected across and perpendicular to 3 active meanders and an oxbow meander. Regression models using TOC and TOC combined with extractable iron and manganese results were determined to be the best fitting statistical models of microbial DNA (via 16S rRNA gene analysis). Fitting these models to observations in both contaminated and natural floodplain deposits, and their associated alluvial aquifers, demonstrates the broad applicability of the geochemical indicator based approach. - Highlights: • Biogeochemical characterization of alluvial floodplain soils and sediments was performed to investigate parameters that may indicate microbial hot spot formation. • A correlation between geochemical parameters (total organic carbon and

Using geochemical indicators to distinguish high biogeochemical activity in floodplain soils and sediments

International Nuclear Information System (INIS)

Kenwell, Amy; Navarre-Sitchler, Alexis; Prugue, Rodrigo; Spear, John R.; Hering, Amanda S.; Maxwell, Reed M.; Carroll, Rosemary W.H.; Williams, Kenneth H.

2016-01-01

A better understanding of how microbial communities interact with their surroundings in physically and chemically heterogeneous subsurface environments will lead to improved quantification of biogeochemical reactions and associated nutrient cycling. This study develops a methodology to predict potential elevated rates of biogeochemical activity (microbial “hotspots”) in subsurface environments by correlating microbial DNA and aspects of the community structure with the spatial distribution of geochemical indicators in subsurface sediments. Multiple linear regression models of simulated precipitation leachate, HCl and hydroxylamine extractable iron and manganese, total organic carbon (TOC), and microbial community structure were used to identify sample characteristics indicative of biogeochemical hotspots within fluvially-derived aquifer sediments and overlying soils. The method has been applied to (a) alluvial materials collected at a former uranium mill site near Rifle, Colorado and (b) relatively undisturbed floodplain deposits (soils and sediments) collected along the East River near Crested Butte, Colorado. At Rifle, 16 alluvial samples were taken from 8 sediment cores, and at the East River, 46 soil/sediment samples were collected across and perpendicular to 3 active meanders and an oxbow meander. Regression models using TOC and TOC combined with extractable iron and manganese results were determined to be the best fitting statistical models of microbial DNA (via 16S rRNA gene analysis). Fitting these models to observations in both contaminated and natural floodplain deposits, and their associated alluvial aquifers, demonstrates the broad applicability of the geochemical indicator based approach. - Highlights: • Biogeochemical characterization of alluvial floodplain soils and sediments was performed to investigate parameters that may indicate microbial hot spot formation. • A correlation between geochemical parameters (total organic carbon and

Cyclic biogeochemical processes and nitrogen fate beneath a subtropical stormwater infiltration basin.

Science.gov (United States)

O'Reilly, Andrew M; Chang, Ni-Bin; Wanielista, Martin P

2012-05-15

A stormwater infiltration basin in north-central Florida, USA, was monitored from 2007 through 2008 to identify subsurface biogeochemical processes, with emphasis on N cycling, under the highly variable hydrologic conditions common in humid, subtropical climates. Cyclic variations in biogeochemical processes generally coincided with wet and dry hydrologic conditions. Oxidizing conditions in the subsurface persisted for about one month or less at the beginning of wet periods with dissolved O(2) and NO(3)(-) showing similar temporal patterns. Reducing conditions in the subsurface evolved during prolonged flooding of the basin. At about the same time O(2) and NO(3)(-) reduction concluded, Mn, Fe and SO(4)(2-) reduction began, with the onset of methanogenesis one month later. Reducing conditions persisted up to six months, continuing into subsequent dry periods until the next major oxidizing infiltration event. Evidence of denitrification in shallow groundwater at the site is supported by median NO(3)(-)-N less than 0.016 mg L(-1), excess N(2) up to 3 mg L(-1) progressively enriched in δ(15)N during prolonged basin flooding, and isotopically heavy δ(15)N and δ(18)O of NO(3)(-) (up to 25‰ and 15‰, respectively). Isotopic enrichment of newly infiltrated stormwater suggests denitrification was partially completed within two days. Soil and water chemistry data suggest that a biogeochemically active zone exists in the upper 1.4m of soil, where organic carbon was the likely electron donor supplied by organic matter in soil solids or dissolved in infiltrating stormwater. The cyclic nature of reducing conditions effectively controlled the N cycle, switching N fate beneath the basin from NO(3)(-) leaching to reduction in the shallow saturated zone. Results can inform design of functionalized soil amendments that could replace the native soil in a stormwater infiltration basin and mitigate potential NO(3)(-) leaching to groundwater by replicating the biogeochemical

Cyclic biogeochemical processes and nitrogen fate beneath a subtropical stormwater infiltration basin

Science.gov (United States)

O'Reilly, Andrew M.; Chang, Ni-Bin; Wanielista, Martin P.

2012-01-01

A stormwater infiltration basin in north–central Florida, USA, was monitored from 2007 through 2008 to identify subsurface biogeochemical processes, with emphasis on N cycling, under the highly variable hydrologic conditions common in humid, subtropical climates. Cyclic variations in biogeochemical processes generally coincided with wet and dry hydrologic conditions. Oxidizing conditions in the subsurface persisted for about one month or less at the beginning of wet periods with dissolved O2 and NO3- showing similar temporal patterns. Reducing conditions in the subsurface evolved during prolonged flooding of the basin. At about the same time O2 and NO3- reduction concluded, Mn, Fe and SO42- reduction began, with the onset of methanogenesis one month later. Reducing conditions persisted up to six months, continuing into subsequent dry periods until the next major oxidizing infiltration event. Evidence of denitrification in shallow groundwater at the site is supported by median NO3-–N less than 0.016 mg L-1, excess N2 up to 3 mg L-1 progressively enriched in δ15N during prolonged basin flooding, and isotopically heavy δ15N and δ18O of NO3- (up to 25‰ and 15‰, respectively). Isotopic enrichment of newly infiltrated stormwater suggests denitrification was partially completed within two days. Soil and water chemistry data suggest that a biogeochemically active zone exists in the upper 1.4 m of soil, where organic carbon was the likely electron donor supplied by organic matter in soil solids or dissolved in infiltrating stormwater. The cyclic nature of reducing conditions effectively controlled the N cycle, switching N fate beneath the basin from NO3- leaching to reduction in the shallow saturated zone. Results can inform design of functionalized soil amendments that could replace the native soil in a stormwater infiltration basin and mitigate potential NO3- leaching to groundwater by replicating the biogeochemical conditions under the observed basin.

Coupling physics and biogeochemistry thanks to high-resolution observations of the phytoplankton community structure in the northwestern Mediterranean Sea

Science.gov (United States)

Marrec, Pierre; Grégori, Gérald; Doglioli, Andrea M.; Dugenne, Mathilde; Della Penna, Alice; Bhairy, Nagib; Cariou, Thierry; Hélias Nunige, Sandra; Lahbib, Soumaya; Rougier, Gilles; Wagener, Thibaut; Thyssen, Melilotus

2018-03-01

Fine-scale physical structures and ocean dynamics strongly influence and regulate biogeochemical and ecological processes. These processes are particularly challenging to describe and understand because of their ephemeral nature. The OSCAHR (Observing Submesoscale Coupling At High Resolution) campaign was conducted in fall 2015 in which a fine-scale structure (1-10 km/1-10 days) in the northwestern Mediterranean Ligurian subbasin was pre-identified using both satellite and numerical modeling data. Along the ship track, various variables were measured at the surface (temperature, salinity, chlorophyll a and nutrient concentrations) with ADCP current velocity. We also deployed a new model of the CytoSense automated flow cytometer (AFCM) optimized for small and dim cells, for near real-time characterization of the surface phytoplankton community structure of surface waters with a spatial resolution of a few kilometers and an hourly temporal resolution. For the first time with this optimized version of the AFCM, we were able to fully resolve Prochlorococcus picocyanobacteria in addition to the easily distinguishable Synechococcus. The vertical physical dynamics and biogeochemical properties of the studied area were investigated by continuous high-resolution CTD profiles thanks to a moving vessel profiler (MVP) during the vessel underway associated with a high-resolution pumping system deployed during fixed stations allowing sampling of the water column at a fine resolution (below 1 m). The observed fine-scale feature presented a cyclonic structure with a relatively cold core surrounded by warmer waters. Surface waters were totally depleted in nitrate and phosphate. In addition to the doming of the isopycnals by the cyclonic circulation, an intense wind event induced Ekman pumping. The upwelled subsurface cold nutrient-rich water fertilized surface waters and was marked by an increase in Chl a concentration. Prochlorococcus and pico- and nano-eukaryotes were more

Correlating phospholipid fatty acids (PLFA) in a landfill leachate polluted aquifer with biogeochemical factors by multivariate statistical methods

DEFF Research Database (Denmark)

Ludvigsen, Liselotte; Albrechtsen, Hans-Jørgen; Rootzén, Helle

1997-01-01

Different multivariate statistical analyses were applied to phospholipid fatty acids representing the biomass composition and to different biogeochemical parameters measured in 37 samples from a landfill contaminated aquifer at Grindsted Landfill (Denmark). Principal component analysis...... and correspondence analysis were used to identify groups of samples showing similar patterns with respect to biogeochemical variables and phospholipid fatty acid composition. The principal component analysis revealed that for the biogeochemical parameters the first principal component was linked to the pollution...... was used to allocate samples of phospholipid fatty acids into predefined classes. A large percentages of samples were classified correctly when discriminating samples into groups of dissolved organic carbon and specific conductivity, indicating that the biomass is highly influenced by the pollution...

A high-resolution atlas of composite Sloan Digital Sky Survey galaxy spectra

Science.gov (United States)

Dobos, László; Csabai, István.; Yip, Ching-Wa; Budavári, Tamás.; Wild, Vivienne; Szalay, Alexander S.

2012-02-01

In this work we present an atlas of composite spectra of galaxies based on the data of the Sloan Digital Sky Survey Data Release 7 (SDSS DR7). Galaxies are classified by colour, nuclear activity and star formation activity to calculate average spectra of high signal-to-noise ratio (S/N) and resolution (? at Δλ= 1 Å), using an algorithm that is robust against outliers. Besides composite spectra, we also compute the first five principal components of the distributions in each galaxy class to characterize the nature of variations of individual spectra around the averages. The continua of the composite spectra are fitted with BC03 stellar population synthesis models to extend the wavelength coverage beyond the coverage of the SDSS spectrographs. Common derived parameters of the composites are also calculated: integrated colours in the most popular filter systems, line-strength measurements and continuum absorption indices (including Lick indices). These derived parameters are compared with the distributions of parameters of individual galaxies, and it is shown on many examples that the composites of the atlas cover much of the parameter space spanned by SDSS galaxies. By co-adding thousands of spectra, a total integration time of several months can be reached, which results in extremely low noise composites. The variations in redshift not only allow for extending the spectral coverage bluewards to the original wavelength limit of the SDSS spectrographs, but also make higher spectral resolution achievable. The composite spectrum atlas is available online at .

Biogeochemical cycles and continental ecosystems - Report on Science and Technology no. 27

International Nuclear Information System (INIS)

Pedro, Georges; Blanzat, Bernard; Albrecht, Pierre; Berthelin, Jacques; Boudot, Jean-Pierre; Munier-Lamy, Colette; Cossa, Daniel; Feix, Isabelle; Guillaumont, Robert; HUC, Alain Yves; Lavelle, Patrick; Lebrun, Michel; Lucas, Yves; Metivier, Henri; Ourisson, Guy; Raimbault, Patrick; Ranger, Jacques; Gerard, Frederic; Schmidt-Laine, Claudine; Dercourt, Jean; Gaillardet, Jerome; Bourrie, Guilhem; Trolard, Fabienne; Gerard, Frederic; Dambrine, Etienne; Meunier, Jean Dominique; Benoit, Marc; Breda, Nathalie; Dupouey, Jean-Luc; Granier, Andre; Franc, Alain; GARBAYE, Jean; Martin, Francis; Landmann, Guy; Loustau, Denis; Martinez, Jose; Crochon, Philippe; Gay, Jean-Didier; Peres, Jean-Marc; Tamponnet, Christian; Andreux, Francis; Tusseauvuillemin, Marie-Helene; Barker, Evelyne; Bouisset, Patrick; Germain, Pierre; Masson, Olivier; Boust, Dominique; Bailly du Bois, Pascal; Abdelouas, Abdesselam; Grambow, Bernd; Ansoborlo, Erich; Chiappini, Remo; Lobinski, Ryzsard; Montavon, Gilles; Moulin, Christophe; Moulin, Valerie; Ollivier, Bernard; Haeseler, Franck; Prieur, Daniel; Magot, Michel; Charmasson, Sabine; Poss, Roland; Grimaldi, Catherine; Grimaldi, Michel; Malet, Caroline

2007-11-01

The aim of this report is to demonstrate that the biogeochemical approach provides a uniting framework for managing the environment of our planet and in particular the environment of a planet reshaped by Man in the best possible way. This framework is based on the study of the biogeochemical cycles that characterize the biosphere (i.e. the place where life is present) and that are naturally linked to the Earth's overall geochemical cycles. The goal of this report is not to describe the biogeochemical cycles of all the chemical elements, but to show why and how these cycles have a significant role in the evolution of a planet shaped by man. In order to do so, the report is divided into two units and four parts: In the first unit, all the information that is directly linked to understanding geochemical cycles is brought together. It is divided in two parts. The first part concerns the description of the biogeochemical cycle of some of the elements that play a major role in the bio-geosphere. We have focused on: - carbon, because it is involved in all of the cycles, i.e. the atmospheric, ecological and geological cycles (chapter 1); - nitrogen, phosphorus and sulfur because they are specific to the living world and because their role is likely to be primordial in the environment (chapter 2); - silicon, aluminum and iron because they allow us to make a bridge between the ecological and the geological systems (chapter 3); - finally, radionuclides (natural and artificial), due to their impact on the biological environment (chapter 4); The second part concerns the biogeochemical study of a number of representative environments of the natural and man-shaped planet. Regarding natural ecosystems, we have focused on: - forest ecosystems, which are highly characteristic of terrestrial environments and which are the site of often very efficient biogeochemical recycling (chapter 5.1); - oceanic environments. Although not part of our topic, the biogeochemistry of these

Multiscale Investigation on Biofilm Distribution and Its Impact on Macroscopic Biogeochemical Reaction Rates: BIOFILM DISTRIBUTION AND RATE SCALING

Energy Technology Data Exchange (ETDEWEB)

Yan, Zhifeng [Institute of Surface-Earth System Science, Tianjin University, Tianjin China; Pacific Northwest National Laboratory, Richland WA USA; Liu, Chongxuan [Pacific Northwest National Laboratory, Richland WA USA; School of Environmental Science and Engineering, Southern University of Science and Technology, Shenzhen China; Liu, Yuanyuan [Pacific Northwest National Laboratory, Richland WA USA; School of Earth Science and Engineering, Nanjing University, Nanjing China; Bailey, Vanessa L. [Pacific Northwest National Laboratory, Richland WA USA

2017-11-01

Biofilms are critical locations for biogeochemical reactions in the subsurface environment. The occurrence and distribution of biofilms at microscale as well as their impacts on macroscopic biogeochemical reaction rates are still poorly understood. This paper investigated the formation and distributions of biofilms in heterogeneous sediments using multiscale models, and evaluated the effects of biofilm heterogeneity on local and macroscopic biogeochemical reaction rates. Sediment pore structures derived from X-ray computed tomography were used to simulate the microscale flow dynamics and biofilm distribution in the sediment column. The response of biofilm formation and distribution to the variations in hydraulic and chemical properties was first examined. One representative biofilm distribution was then utilized to evaluate its effects on macroscopic reaction rates using nitrate reduction as an example. The results revealed that microorganisms primarily grew on the surfaces of grains and aggregates near preferential flow paths where both electron donor and acceptor were readily accessible, leading to the heterogeneous distribution of biofilms in the sediments. The heterogeneous biofilm distribution decreased the macroscopic rate of biogeochemical reactions as compared with those in homogeneous cases. Operationally considering the heterogeneous biofilm distribution in macroscopic reactive transport models such as using dual porosity domain concept can significantly improve the prediction of biogeochemical reaction rates. Overall, this study provided important insights into the biofilm formation and distribution in soils and sediments as well as their impacts on the macroscopic manifestation of reaction rates.

Extracellular Electron Transport Coupling Biogeochemical Processes Centimeters

DEFF Research Database (Denmark)

Risgaard-Petersen, Nils; Fossing, Henrik; Christensen, Peter Bondo

2010-01-01

of the oxygen uptake in laboratory incubations of initially homogenized and stabilized sediment. Using microsensors and process rate measurements we further investigated the effect of the electric currents on sediment biogeochemistry. Dissolved sulfide readily donated electrons to the networks and could...... confirmed the depth range of the electric communication and indicated donation of electrons directly from organotrophic bacteria. The separation of oxidation and reduction processes created steep pH gradients eventually causing carbonate precipitation at the surface. The results indicate that electron...... exchanging organisms have major biogeochemical importance as they allow widely separated electron donors and acceptors to react with one another....

Biogeochemical cycles of Chernobyl-born radionuclides in the contaminated forest ecosystems: long-term dynamics of the migration processes

Science.gov (United States)

Shcheglov, Alexey; Tsvetnova, Ol'ga; Klyashtorin, Alexey

2013-04-01

Biogeochemical migration is a dominant factor of the radionuclide transport through the biosphere. In the early XX century, V.I. Vernadskii, a Russian scientist known, noted about a special role living things play in transport and accumulation of natural radionuclide in various environments. The role of biogeochemical processes in migration and redistribution of technogenic radionuclides is not less important. In Russia, V. M. Klechkovskii and N.V. Timofeev-Ressovskii showed some important biogeochemical aspects of radionuclide migration by the example of global fallout and Kyshtym accident. Their followers, R.M. Alexakhin, M.A. Naryshkin, N.V. Kulikov, F.A. Tikhomirov, E.B. Tyuryukanova, and others also contributed a lot to biogeochemistry of radionuclides. In the post-Chernobyl period, this area of knowledge received a lot of data that allowed building the radioactive element balance and flux estimation in various biogeochemical cycles [Shcheglov et al., 1999]. Regrettably, many of recent radioecological studies are only focused on specific radionuclide fluxes or pursue some applied tasks, missing the holistic approach. Most of the studies consider biogeochemical fluxes of radioactive isotopes in terms of either dose estimation or radionuclide migration rates in various food chains. However, to get a comprehensive picture and develop a reliable forecast of environmental, ecological, and social consequences of radioactive pollution in a vast contaminated area, it is necessary to investigate all the radionuclide fluxes associated with the biogeochemical cycles in affected ecosystems. We believe such an integrated approach would be useful to study long-term environmental consequences of the Fukushima accident as well. In our long-term research, we tried to characterize the flux dynamics of the Chernobyl-born radionuclides in the contaminated forest ecosystems and landscapes as a part of the integrated biogeochemical process. Our field studies were started in June of

Reanalysis of biogeochemical properties in the Mediterranean Sea

Science.gov (United States)

Cossarini, Gianpiero; Teruzzi, Anna; Salon, Stefano; Solidoro, Cosimo

2014-05-01

In the 3D variational (3DVAR) assimilation approach the error covariance matrix can be decomposed in a series of operators. The decomposition makes the 3DVAR particularly suitable for marine biogeochemistry data assimilation, because of the reduced computational costs of the method and its modularity, which allows to define the covariance among the biogeochemical variables in a specific operator. In the present work, the results of 3DVAR assimilation of surface chlorophyll concentration in a multi-annual simulation of the Mediterranean Sea biogeochemistry are presented. The assimilated chlorophyll concentrations are obtained from satellite observations (Volpe et al. 2012). The multi-annual simulation is carried out using the OPATM-BFM model (Lazzari et al. 2012), which describes the low trophic web dynamics and is offline coupled with the MFS physical model (Oddo et al. 2009). In the OPATM-BFM four types of phytoplankton are simulated in terms of their content in carbon, nitrogen, phosphorous, silicon and chlorophyll. In the 3DVAR the error covariance matrix has been decomposed in three different operators, which account for the vertical, the horizontal and the biogeochemical covariance (Teruzzi et al. 2014). The biogeochemical operator propagates the result of the assimilation to the OPATM-BFM variables, providing innovation for the components of the four phytoplankton types. The biogeochemical covariance has been designed supposing that the assimilation preserves the physiological status and the relative abundances of phytoplankton types. Practically, the assimilation preserves the internal quotas of the components for each phytoplankton as long as the optimal growth rate condition are maintained. The quotas preservation is not applied when the phytoplankton is in severe declining growth phase, and the correction provided by the assimilation is set equal to zero. Moreover, the relative abundances among the phytoplankton functional types are preserved. The 3DVAR

Error assessment of biogeochemical models by lower bound methods (NOMMA-1.0

Directory of Open Access Journals (Sweden)

V. Sauerland

2018-03-01

Full Text Available Biogeochemical models, capturing the major feedbacks of the pelagic ecosystem of the world ocean, are today often embedded into Earth system models which are increasingly used for decision making regarding climate policies. These models contain poorly constrained parameters (e.g., maximum phytoplankton growth rate, which are typically adjusted until the model shows reasonable behavior. Systematic approaches determine these parameters by minimizing the misfit between the model and observational data. In most common model approaches, however, the underlying functions mimicking the biogeochemical processes are nonlinear and non-convex. Thus, systematic optimization algorithms are likely to get trapped in local minima and might lead to non-optimal results. To judge the quality of an obtained parameter estimate, we propose determining a preferably large lower bound for the global optimum that is relatively easy to obtain and that will help to assess the quality of an optimum, generated by an optimization algorithm. Due to the unavoidable noise component in all observations, such a lower bound is typically larger than zero. We suggest deriving such lower bounds based on typical properties of biogeochemical models (e.g., a limited number of extremes and a bounded time derivative. We illustrate the applicability of the method with two real-world examples. The first example uses real-world observations of the Baltic Sea in a box model setup. The second example considers a three-dimensional coupled ocean circulation model in combination with satellite chlorophyll a.

Error assessment of biogeochemical models by lower bound methods (NOMMA-1.0)

Science.gov (United States)

Sauerland, Volkmar; Löptien, Ulrike; Leonhard, Claudine; Oschlies, Andreas; Srivastav, Anand

2018-03-01

Biogeochemical models, capturing the major feedbacks of the pelagic ecosystem of the world ocean, are today often embedded into Earth system models which are increasingly used for decision making regarding climate policies. These models contain poorly constrained parameters (e.g., maximum phytoplankton growth rate), which are typically adjusted until the model shows reasonable behavior. Systematic approaches determine these parameters by minimizing the misfit between the model and observational data. In most common model approaches, however, the underlying functions mimicking the biogeochemical processes are nonlinear and non-convex. Thus, systematic optimization algorithms are likely to get trapped in local minima and might lead to non-optimal results. To judge the quality of an obtained parameter estimate, we propose determining a preferably large lower bound for the global optimum that is relatively easy to obtain and that will help to assess the quality of an optimum, generated by an optimization algorithm. Due to the unavoidable noise component in all observations, such a lower bound is typically larger than zero. We suggest deriving such lower bounds based on typical properties of biogeochemical models (e.g., a limited number of extremes and a bounded time derivative). We illustrate the applicability of the method with two real-world examples. The first example uses real-world observations of the Baltic Sea in a box model setup. The second example considers a three-dimensional coupled ocean circulation model in combination with satellite chlorophyll a.

A decade of physical and biogeochemical measurements in the Northern Indian Ocean.

Digital Repository Service at National Institute of Oceanography (India)

PrasannaKumar, S.; Sardesai, S.; Ramaiah, N.

at understanding the seasonal variability of physical and biogeochemical parameters. The results showed strongest seasonal cycle in the Arabian Sea with blooms during summer and winter. Upwelling, advection and wind-mixing drive the summer bloom, while the winter...

Hyporheic Exchange Flows and Biogeochemical Patterns near a Meandering Stream: East Fork of the Jemez River, Valles Caldera National Preserve, New Mexico

Science.gov (United States)

Christensen, H.; Wooten, J. P.; Swanson, E.; Senison, J. J.; Myers, K. D.; Befus, K. M.; Warden, J.; Zamora, P. B.; Gomez, J. D.; Wilson, J. L.; Groffman, A.; Rearick, M. S.; Cardenas, M. B.

2012-12-01

A study by the 2012 Hydrogeology Field Methods class of the University of Texas at Austin implemented multiple approaches to evaluate and characterize local hyporheic zone flow and biogeochemical trends in a highly meandering reach of the of the East Fork of the Jemez River, a fourth order stream in northwestern New Mexico. This section of the Jemez River is strongly meandering and exhibits distinct riffle-pool morphology. The high stream sinuosity creates inter-meander hyporheic flow that is also largely influenced by local groundwater gradients. In this study, dozens of piezometers were used to map the water table and flow vectors were then calculated. Surface water and ground water samples were collected and preserved for later geochemical analysis by ICPMS and HPLC, and unstable parameters and alkalinity were measured on-site. Additionally, information was collected from thermal monitoring of the streambed, stream gauging, and from a series of electrical resistivity surveys forming a network across the site. Hyporheic flow paths are suggested by alternating gaining and losing sections of the stream as determined by stream gauging at multiple locations along the reach. Water table maps and calculated fluxes across the sediment-water interface also indicate hyporheic flow paths. We find variability in the distribution of biogeochemical constituents (oxidation-reduction potential, nitrate, ammonium, and phosphate) along interpreted flow paths which is partly consistent with hyporheic exchange. The variability and heterogeneity of reducing and oxidizing conditions is interpreted to be a result of groundwater-surface water interaction. Two-dimensional mapping of biogeochemical parameters show redox transitions along interpreted flow paths. Further analysis of various measured unstable chemical parameters results in observable trends strongly delineated along these preferential flow paths that are consistent with the direction of groundwater flow and the assumed

NATO Advanced Research Workshop on The Biogeochemical Cycling of Sulfur and Nitrogen in the Remote Atmosphere

CERN Document Server

Charlson, Robert; Andreae, Meinrat; Rodhe, Henning

1985-01-01

Viewed from space, the Earth appears as a globe without a beginning or an end. Encompassing the globe is the atmosphere with its three phases-­ gaseous, liquid, and solid--moving in directions influenced by sunlight, gravity, and rotation. The chemical compositions of these phases are determined by biogeochemical cycles. Over the past hundred years, the processes governing the rates and reactions in the atmospheric biogeochemical cycles have typically been studied in regions where scientists lived. Hence, as time has gone by, the advances in our knowledge of atmospheric chemical cycles in remote areas have lagged substantially behind those for more populated areas. Not only are the data less abundant, they are also scattered. Therefore, we felt a workshop would be an excellent mechanism to assess the state­ of-knowledge of the atmospheric cycles of sulfur and nitrogen in remote areas and to make recommendations for future research. Thus, a NATO Advanced Research Workshop '~he Biogeochemical Cycling of Sulfu...

Biogeochemical control points in a water-limited critical zone

Science.gov (United States)

Chorover, J.; Brooks, P. D.; Gallery, R. E.; McIntosh, J. C.; Olshansky, Y.; Rasmussen, C.

2017-12-01

The routing of water and carbon through complex terrain is postulated to control structure evolution in the sub-humid critical zone of the southwestern US. By combining measurements of land-atmosphere exchange, ecohydrologic partitioning, and subsurface biogeochemistry, we seek to quantify how a heterogeneous (in time and space) distribution of "reactants" impacts both short-term (sub-)catchment response (e.g., pore and surface water chemical dynamics) and long-term landscape evolution (e.g., soil geochemistry/morphology and regolith weathering depth) in watersheds underlain by rhyolite and schist. Instrumented pedons in convergent, planar, and divergent landscape positions show distinct depth-dependent responses to precipitation events. Wetting front propagation, dissolved carbon flux and associated biogeochemical responses (e.g., pulses of CO2 production, O2 depletion, solute release) vary with topography, revealing the influence of lateral subsidies of water and carbon. The impacts of these episodes on the evolution of porous media heterogeneity is being investigated by statistical analysis of pore water chemistry, chemical/spectroscopic studies of solid phase organo-mineral products, sensor-derived water characteristic curves, and quantification of co-located microbial community activity/composition. Our results highlight the interacting effects of critical zone structure and convergent hydrologic flows in the evolution of biogeochemical control points.

Winter flooding in Dutch stream valley floodplains: biogeochemical effects and vegetation consequences

NARCIS (Netherlands)

Beumer, V.

2009-01-01

Winter flooding in Dutch stream valley floodplains: biogeochemical effects and vegetation consequences Victor Beumer Climatic change has great impacts on stream catchments and their ecology. Expectations are that more extreme climate events will result in undesired flooding in stream catchments. In

Wetland biogeochemical processes and simulation modeling

Science.gov (United States)

Bai, Junhong; Huang, Laibin; Gao, Haifeng; Jia, Jia; Wang, Xin

2018-02-01

As the important landscape with rich biodiversity and high productivity, wetlands can provide numerous ecological services including playing an important role in regulating global biogeochemical cycles, filteringpollutants from terrestrial runoff and atmospheric deposition, protecting and improving water quality, providing living habitats for plants and animals, controlling floodwaters, and retaining surface water flow during dry periods (Reddy and DeLaune, 2008; Qin and Mitsch, 2009; Zhao et al., 2016). However, more than 50% of the world's wetlands had been altered, degraded or lost through a wide range of human activities in the past 150 years, and only a small percentage of the original wetlands remained around the world after over two centuries of intensive development and urbanization (O'connell, 2003; Zhao et al., 2016).

Evaluation of heavy metal pollution in bogs of Tomsk region on change in biogeochemical activity of ericaceous shrubs

Science.gov (United States)

Gaskova, L. P.

2018-01-01

The article discusses the change in biogeochemical activity of plant species in bogs under the influence of various types of human impact (roads, cities, drainage of mires, fire). It has been established that ericaceous shrubs, depending on the species, react with varying degrees of intensity to anthropogenic influences. The biogeochemical activity of species increased by 2.5 to 4.8 times in polluted sites.

Natural environment and the biogeochemical cycle s. Pt. A

Energy Technology Data Exchange (ETDEWEB)

Hutzinger, O [ed.

1980-01-01

At the moment three volumes of the handbook are planned. Volume 1 deals with the natural environment and the biogeochemical cycles therein, including some background information such as energetics and ecology. The individual chapters are dealing with the atmosphere, the hydrosphere, chemical oceanography, chemical aspects of soil, the cycle of oxygen, sulfur, and phosphorus, metal cycles and biological methylation, and natural organohalogen compounds. Separate abstracts are prepared for 5 chapters of this book.

Volume reduction outweighs biogeochemical processes in controlling phosphorus treatment in aged detention systems

Science.gov (United States)

Shukla, Asmita; Shukla, Sanjay; Annable, Michael D.; Hodges, Alan W.

2017-08-01

Stormwater detention areas (SDAs) play an important role in treating end-of-the-farm runoff in phosphorous (P) limited agroecosystems. Phosphorus transport from the SDAs, including those through subsurface pathways, are not well understood. The prevailing understanding of these systems assumes that biogeochemical processes play the primary treatment role and that subsurface losses can be neglected. Water and P fluxes from a SDA located in a row-crop farm were measured for two years (2009-2011) to assess the SDA's role in reducing downstream P loads. The SDA treated 55% (497 kg) and 95% (205 kg) of the incoming load during Year 1 (Y1, 09-10) and Year 2 (Y2, 10-11), respectively. These treatment efficiencies were similar to surface water volumetric retention (49% in Y1 and 84% in Y2) and varied primarily with rainfall. Similar water volume and P retentions indicate that volume retention is the main process controlling P loads. A limited role of biogeochemical processes was supported by low to no remaining soil P adsorption capacity due to long-term drainage P input. The fact that outflow P concentrations (Y1 = 368.3 μg L- 1, Y2 = 230.4 μg L- 1) could be approximated by using a simple mixing of rainfall and drainage P input further confirmed the near inert biogeochemical processes. Subsurface P losses through groundwater were 304 kg (27% of inflow P) indicating that they are an important source for downstream P. Including subsurface P losses reduces the treatment efficiency to 35% (from 61%). The aboveground biomass in the SDA contained 42% (240 kg) of the average incoming P load suggesting that biomass harvesting could be a cost-effective alternative for reviving the role of biogeochemical processes to enhance P treatment in aged, P-saturated SDAs. The 20-year present economic value of P removal through harvesting was estimated to be 341,000, which if covered through a cost share or a payment for P treatment services program could be a positive outcome for both

Biogeochemical and Ecomorphological Niche Segregation of Mediterranean Woody Species along a Local Gradient

Directory of Open Access Journals (Sweden)

Enrique G. de la Riva

2017-07-01

Full Text Available According with niche theory the species are specialized in different ecological niches, being able to coexist as result of a differential use of resources. In this context, the biogeochemical niche hypothesis proposes that species have an optimal elemental composition which results from the link between the chemical and morphological traits for the optimum plant functioning. Thus, and attending to the limiting similarity concept, different elemental composition and plant structure among co-occurring species may reduce competition, promoting different functional niches. Different functional habits associated with leaf life-span or growth forms are associated with different strategies for resource uptake, which could promote niche partitioning. In the present study, based on the biogeochemical niche concept and the use of resources in different proportions, we have focused on leaf traits (morphological and chemical associated with resource uptake, and explored the niche partitioning among functional habits: leaf life-span (deciduous, evergreen, and semideciduous and growth (tree, shrub, and arborescent-shrub. To this end, we have quantified the hypervolume of the leaf functional trait space (both structure and chemical composition in a sample of 45 Mediterranean woody species from Sierra Morena Mountains (Spain growing along a local soil resource gradient. Our results show consistent variation in functional space for woody communities distributed along the environmental gradient. Thus, communities dominated by deciduous trees with faster growth and a predominant acquisitive strategy were characteristic of bottom forests and showed highest leaf biogeochemical space. While semideciduous shrubs and evergreen (arborescent, trees species, characterized by a conservative strategy, dominated ridge forests and showed smaller functional space. In addition, within each topographical zone or environment type, the foliar biogeochemical niche partitioning

Biogeochemical and Ecomorphological Niche Segregation of Mediterranean Woody Species along a Local Gradient.

Science.gov (United States)

de la Riva, Enrique G; Marañón, Teodoro; Violle, Cyrille; Villar, Rafael; Pérez-Ramos, Ignacio M

2017-01-01

According with niche theory the species are specialized in different ecological niches, being able to coexist as result of a differential use of resources. In this context, the biogeochemical niche hypothesis proposes that species have an optimal elemental composition which results from the link between the chemical and morphological traits for the optimum plant functioning. Thus, and attending to the limiting similarity concept, different elemental composition and plant structure among co-occurring species may reduce competition, promoting different functional niches. Different functional habits associated with leaf life-span or growth forms are associated with different strategies for resource uptake, which could promote niche partitioning. In the present study, based on the biogeochemical niche concept and the use of resources in different proportions, we have focused on leaf traits (morphological and chemical) associated with resource uptake, and explored the niche partitioning among functional habits: leaf life-span (deciduous, evergreen, and semideciduous) and growth (tree, shrub, and arborescent-shrub). To this end, we have quantified the hypervolume of the leaf functional trait space (both structure and chemical composition) in a sample of 45 Mediterranean woody species from Sierra Morena Mountains (Spain) growing along a local soil resource gradient. Our results show consistent variation in functional space for woody communities distributed along the environmental gradient. Thus, communities dominated by deciduous trees with faster growth and a predominant acquisitive strategy were characteristic of bottom forests and showed highest leaf biogeochemical space. While semideciduous shrubs and evergreen (arborescent, trees) species, characterized by a conservative strategy, dominated ridge forests and showed smaller functional space. In addition, within each topographical zone or environment type, the foliar biogeochemical niche partitioning would underlie the

Biogeochemical generation of dissolved inorganic carbon and nitrogen in the North Branch of inner Changjiang Estuary in a dry season

Science.gov (United States)

Zhai, Wei-Dong; Yan, Xiu-Li; Qi, Di

2017-10-01

We investigated the surface water carbonate system, nutrients, and relevant hydrochemical parameters in the inner Changjiang (Yangtze River) Estuary in early spring 2009 and 2010. The two surveys were carried out shortly after spring-tide days, and covered both the channel-like South Branch and the freshwater-blocked North Branch. In the North Branch, with a water residence time of approximately one month, we detected remarkable partial pressures of CO2 (pCO2) of 930-1518 μatm with a salinity range of 4.5-17.4, which were substantially higher than the South Branch pCO2 values of 700-1100 μatm at salinities of less than 0.88. The North Branch pCO2 distribution pattern is unique compared with many other estuaries where aquatic pCO2 normally declines with salinity increase. Furthermore, the biogeochemical additions of ammonium (7.4-65.7 μmol kg-1) and alkalinity (196-695 μmol kg-1) were identified in salinities between 4 and 16 in the North Branch. Based on field data analyses and simplified stoichiometric equations, we suggest that the relatively high North Branch pCO2 values and estuarine additions of dissolved inorganic nitrogen/carbon in the mid-salinity area were strongly associated with each other. These signals were primarily controlled by biogeochemical processes in the North Branch, combining biogenic organic matter decomposition (i.e. respiration), ammonia oxidation, CaCO3 dissolution, and CO2 degassing. In the upper reach of the South Branch, notable salinity values of 0.20-0.88 were detected, indicating saltwater spillover from the North Branch. These spillover waters had minor contributions (1.5-6.9%) to the springtime nutrient, dissolved inorganic carbon, and alkalinity export fluxes from Changjiang to the adjacent East China Sea. This is the first attempt to understand the biogeochemical controls of the unique pCO2 distributions in the North Branch, and to evaluate the effects of saltwater spillover from the North Branch on dry-season export fluxes

Nitrous Oxide Emissions from Biofuel Crops and Parameterization in the EPIC Biogeochemical Model

Science.gov (United States)

This presentation describes year 1 field measurements of N2O fluxes and crop yields which are used to parameterize the EPIC biogeochemical model for the corresponding field site. Initial model simulations are also presented.

Intra- versus inter-site macroscale variation in biogeochemical properties along a paddy soil chronosequence

Directory of Open Access Journals (Sweden)

C. Mueller-Niggemann

2012-03-01

Full Text Available In order to assess the intrinsic heterogeneity of paddy soils, a set of biogeochemical soil parameters was investigated in five field replicates of seven paddy fields (50, 100, 300, 500, 700, 1000, and 2000 yr of wetland rice cultivation, one flooded paddy nursery, one tidal wetland (TW, and one freshwater site (FW from a coastal area at Hangzhou Bay, Zhejiang Province, China. All soils evolved from a marine tidal flat substrate due to land reclamation. The biogeochemical parameters based on their properties were differentiated into (i a group behaving conservatively (TC, TOC, TN, TS, magnetic susceptibility, soil lightness and colour parameters, δ¹³C, δ¹⁵N, lipids and n-alkanes and (ii one encompassing more labile properties or fast cycling components (N_mic, C_mic, nitrate, ammonium, DON and DOC. The macroscale heterogeneity in paddy soils was assessed by evaluating intra- versus inter-site spatial variability of biogeochemical properties using statistical data analysis (descriptive, explorative and non-parametric. Results show that the intrinsic heterogeneity of paddy soil organic and minerogenic components per field is smaller than between study sites. The coefficient of variation (CV values of conservative parameters varied in a low range (10% to 20%, decreasing from younger towards older paddy soils. This indicates a declining variability of soil biogeochemical properties in longer used cropping sites according to progress in soil evolution. A generally higher variation of CV values (>20–40% observed for labile parameters implies a need for substantially higher sampling frequency when investigating these as compared to more conservative parameters. Since the representativeness of the sampling strategy could be sufficiently demonstrated, an investigation of long-term carbon accumulation/sequestration trends in topsoils of the 2000 yr paddy chronosequence under wetland rice cultivation

Resolution enhancement techniques in microscopy

Science.gov (United States)

Cremer, Christoph; Masters, Barry R.

2013-05-01

We survey the history of resolution enhancement techniques in microscopy and their impact on current research in biomedicine. Often these techniques are labeled superresolution, or enhanced resolution microscopy, or light-optical nanoscopy. First, we introduce the development of diffraction theory in its relation to enhanced resolution; then we explore the foundations of resolution as expounded by the astronomers and the physicists and describe the conditions for which they apply. Then we elucidate Ernst Abbe's theory of optical formation in the microscope, and its experimental verification and dissemination to the world wide microscope communities. Second, we describe and compare the early techniques that can enhance the resolution of the microscope. Third, we present the historical development of various techniques that substantially enhance the optical resolution of the light microscope. These enhanced resolution techniques in their modern form constitute an active area of research with seminal applications in biology and medicine. Our historical survey of the field of resolution enhancement uncovers many examples of reinvention, rediscovery, and independent invention and development of similar proposals, concepts, techniques, and instruments. Attribution of credit is therefore confounded by the fact that for understandable reasons authors stress the achievements from their own research groups and sometimes obfuscate their contributions and the prior art of others. In some cases, attribution of credit is also made more complex by the fact that long term developments are difficult to allocate to a specific individual because of the many mutual connections often existing between sometimes fiercely competing, sometimes strongly collaborating groups. Since applications in biology and medicine have been a major driving force in the development of resolution enhancing approaches, we focus on the contribution of enhanced resolution to these fields.

Psychosocial Resolution and Counsellor Trainee Empathy.

Science.gov (United States)

Gold, Joshua M.

1992-01-01

Entry-level counseling students (n=74) were surveyed to investigate the relationship between resolution of Erikson's psychosocial stage of intimacy/isolation and counselor trainee empathy. Results revealed a significant positive relationship between measures of psychosocial stage resolution and counselor empathy and a significant main effect for…

Coupling physics and biogeochemistry thanks to high-resolution observations of the phytoplankton community structure in the northwestern Mediterranean Sea

Directory of Open Access Journals (Sweden)

P. Marrec

2018-03-01

Full Text Available Fine-scale physical structures and ocean dynamics strongly influence and regulate biogeochemical and ecological processes. These processes are particularly challenging to describe and understand because of their ephemeral nature. The OSCAHR (Observing Submesoscale Coupling At High Resolution campaign was conducted in fall 2015 in which a fine-scale structure (1–10 km∕1–10 days in the northwestern Mediterranean Ligurian subbasin was pre-identified using both satellite and numerical modeling data. Along the ship track, various variables were measured at the surface (temperature, salinity, chlorophyll a and nutrient concentrations with ADCP current velocity. We also deployed a new model of the CytoSense automated flow cytometer (AFCM optimized for small and dim cells, for near real-time characterization of the surface phytoplankton community structure of surface waters with a spatial resolution of a few kilometers and an hourly temporal resolution. For the first time with this optimized version of the AFCM, we were able to fully resolve Prochlorococcus picocyanobacteria in addition to the easily distinguishable Synechococcus. The vertical physical dynamics and biogeochemical properties of the studied area were investigated by continuous high-resolution CTD profiles thanks to a moving vessel profiler (MVP during the vessel underway associated with a high-resolution pumping system deployed during fixed stations allowing sampling of the water column at a fine resolution (below 1 m. The observed fine-scale feature presented a cyclonic structure with a relatively cold core surrounded by warmer waters. Surface waters were totally depleted in nitrate and phosphate. In addition to the doming of the isopycnals by the cyclonic circulation, an intense wind event induced Ekman pumping. The upwelled subsurface cold nutrient-rich water fertilized surface waters and was marked by an increase in Chl a concentration. Prochlorococcus and pico

Possible impacts of global warming on tundra and boreal forest ecosystems - comparison of some biogeochemical models

Energy Technology Data Exchange (ETDEWEB)

Ploechl, M.; Cramer, W.

1995-06-01

Global warming affects the magnitude of carbon, water and nitrogen fluxes between biosphere and atmosphere as well as the distribution of vegetation types. Biogeochemical models, global as well as patch models, can be used to estimate the differences between the mean values of annual net primary production (NPP) for the present and for future climate scenarios. Both approaches rely on the prescribed pattern of vegetation types. Structural, rule based models can predict such patterns, provided that vegetation and climate are in equilibrium. The coupling of biogeochemical and structural models gives the opportunity to test the sensitivity of biogeochemical processes not only to climatic change but also to biome shifts. Whether the annual mean NPP of a vegetation type increses or decreases depends strongly on the assumptions about a CO{sub 2} fertilization effect and nitrogen cycling. Results from our coupled model show that, given that direct CO{sub 2} effects are uncertain, (i) average NPP of these northern biomes might decrease under global warming, but (ii) total NPP of the region would increase, due to the northward shift of the taiga biome. (orig.)

How do persistent organic pollutants be coupled with biogeochemical cycles of carbon and nutrients in terrestrial ecosystems under global climate change?

Energy Technology Data Exchange (ETDEWEB)

Teng, Ying [Chinese Academy of Sciences, Nanjing (China). Key Lab. of Soil Environment and Pollution Remediation; Griffith Univ., Nathan, QLD (Australia). Environmetnal Futures Centre and School of Biomolecular and Physical Sciences; Xu, Zhihong; Reverchon, Frederique [Griffith Univ., Nathan, QLD (Australia). Environmetnal Futures Centre and School of Biomolecular and Physical Sciences; Luo, Yongming [Chinese Academy of Sciences, Nanjing (China). Key Lab. of Soil Environment and Pollution Remediation

2012-03-15

Global climate change (GCC), especially global warming, has affected the material cycling (e.g., carbon, nutrients, and organic chemicals) and the energy flows of terrestrial ecosystems. Persistent organic pollutants (POPs) were regarded as anthropogenic organic carbon (OC) source, and be coupled with the natural carbon (C) and nutrient biogeochemical cycling in ecosystems. The objective of this work was to review the current literature and explore potential coupling processes and mechanisms between POPs and biogeochemical cycles of C and nutrients in terrestrial ecosystems induced by global warming. Global warming has caused many physical, chemical, and biological changes in terrestrial ecosystems. POPs environmental fate in these ecosystems is controlled mainly by temperature and biogeochemical processes. Global warming may accelerate the re-emissions and redistribution of POPs among environmental compartments via soil-air exchange. Soil-air exchange is a key process controlling the fate and transportation of POPs and terrestrial ecosystem C at regional and global scales. Soil respiration is one of the largest terrestrial C flux induced by microbe and plant metabolism, which can affect POPs biotransformation in terrestrial ecosystems. Carbon flow through food web structure also may have important consequences for the biomagnification of POPs in the ecosystems and further lead to biodiversity loss induced by climate change and POPs pollution stress. Moreover, the integrated techniques and biological adaptation strategy help to fully explore the coupling mechanisms, functioning and trends of POPs and C and nutrient biogeochemical cycling processes in terrestrial ecosystems. There is increasing evidence that the environmental fate of POPs has been linked with biogeochemical cycles of C and nutrients in terrestrial ecosystems under GCC. However, the relationships between POPs and the biogeochemical cycles of C and nutrients are still not well understood. Further

A framework to assess biogeochemical response to ecosystem disturbance using nutrient partitioning ratios

Science.gov (United States)

Kranabetter, J. Marty; McLauchlan, Kendra K.; Enders, Sara K.; Fraterrigo, Jennifer M.; Higuera, Philip E.; Morris, Jesse L.; Rastetter, Edward B.; Barnes, Rebecca; Buma, Brian; Gavin, Daniel G.; Gerhart, Laci M.; Gillson, Lindsey; Hietz, Peter; Mack, Michelle C.; McNeil, Brenden; Perakis, Steven

2016-01-01

Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil and plant nutrient stocks in mature ecosystems represents a characteristic site property. Focusing on nitrogen (N), we hypothesize that this partitioning ratio (soil N: plant N) will undergo a predictable trajectory after disturbance. We investigate the nature of this partitioning ratio with three approaches: (1) nutrient stock data from forested ecosystems in North America, (2) a process-based ecosystem model, and (3) conceptual shifts in site nutrient availability with altered disturbance frequency. Partitioning ratios could be applied to a variety of ecosystems and successional states, allowing for improved temporal scaling of disturbance events. The generally short-term empirical evidence for recovery trajectories of nutrient stocks and partitioning ratios suggests two areas for future research. First, we need to recognize and quantify how disturbance effects can be accreting or depleting, depending on whether their net effect is to increase or decrease ecosystem nutrient stocks. Second, we need to test how altered disturbance frequencies from the present state may be constructive or destructive in their effects on biogeochemical cycling and nutrient availability. Long-term studies, with repeated sampling of soils and vegetation, will be essential in further developing this framework of biogeochemical response to disturbance.

Geochemical and biogeochemical investigations in national parks [Badania geochemiczne i biogeochemiczne w parkach narodowych

Science.gov (United States)

Migaszewski, Z.M.; Lamothe, P.J.; Crock, J.G.

1998-01-01

National parks hold a key position among nature protection areas including a diversity of resources - natural, cultural, recreational and scenic. These "inviolable sanctuaries" are simultaneosuly ecologic knots and pristine nature refuges due to the presence of a number of unique plant and animal species. These species make up a natural gene bank. Classically, the level of biologic degradation in national parks is determined on the basis of qualitative and quantitative studies of plant bioindicators. Their scope encompasses phytosociologic survey the purpose of which is to identify floral assemblages with a detailed list of species to record future changes in their number. The best biomonitors of air quality are epiphytic lichens, ground mosses and conifers. Geochemical and biogeochemical investigations are widely performed in the U.S.A. to evaluate the degree of pollution in the nature protection areas including national parks (Gough et al., 1988a, b; Crock et al., 1992a, 1993; Jackson et al., 1995). Variability of element concentrations in soils and plants is assessed by using unbalanced, nested analysis-of-variance (ANOVA). It enables obtaining important statistical information with a minimum number of samples. In some cases a combined grid and barbell sampling design is applied (Jackson et al., 1995). In specific mountainous parks a method of 2-3 transects parallel to the extent of range (crest) is recommended. To determine the impact of a single pollution source on a given park, traverse sampling beginning near the emitter is used (Crock et al., 1992, 1993). The obtained results are a "snapshot" of chemical composition of soils and plant bioindicators that can be a reference for any future changes in the concentration level of chemical elements and organics. In addition, baseline element and organics composition of the media mentioned above can be compared with that obtained for geochemical atlases of polluted urban and industrial areas. Geochemical and

Burial and exhumation of temperate bedrock reefs as elucidated by repetitive high-resolution sea floor sonar surveys: Spatial patterns and impacts to species' richness and diversity

Science.gov (United States)

Storlazzi, Curt D.; Fregoso, Theresa A.; Figurski, Jared D.; Freiwald, Jan; Lonhart, Steve I.; Finlayson, David P.

2013-01-01

To understand how chronic sediment burial and scour contribute to variation in the structure of algal and invertebrate communities on temperate bedrock reefs, the dynamics of the substrate and communities were monitored at locations that experience sand inundation and adjacent areas that do not. Co-located benthic scuba-transect surveys and high-resolution swath-sonar surveys were completed on bedrock reefs on the inner shelf of northern Monterey Bay, CA, in early winter 2009, spring 2010, and summer 2010. Analysis of the sonar surveys demonstrates that during the 8 months over which the surveys were conducted, 19.6% of the study area was buried by sand while erosion resulted in the exposure of bedrock over 13.8% of the study area; the remainder underwent no change between the surveys. Substrate classifications from the benthic transect surveys correlated with classifications generated from the sonar surveys, demonstrating the capacity of high-resolution sonar surveys to detect burial of bedrock reefs by sediment. On bedrock habitat that underwent burial and exhumation, species' diversity and richness of rock-associated sessile and mobile organisms were 50–66% lower as compared to adjacent stable bedrock habitat. While intermediate levels of disturbance can increase the diversity and richness of communities, these findings demonstrate that burial and exhumation of bedrock habitat are sources of severe disturbance. We suggest that substrate dynamics must be considered when developing predictions of benthic community distributions based on sea floor imagery. These results highlight the need for predictive models of substrate dynamics and for a better understanding of how burial and exhumation shape benthic communities.

Role of zooplankton dynamics for Southern Ocean phytoplankton biomass and global biogeochemical cycles

DEFF Research Database (Denmark)

Le Quéré, Corinne; Buitenhuis, Erik T.; Moriarty, Róisín

2016-01-01

zooplankton community, despite iron limitation of phytoplankton community growth rates. This result has implications for the representation of global biogeochemical cycles in models as zooplankton faecal pellets sink rapidly and partly control the carbon export to the intermediate and deep ocean....

Small scale denitrification variability in riparian zones: Results from a high-resolution dataset

Science.gov (United States)

Gassen, Niklas; Knöller, Kay; Musolff, Andreas; Popp, Felix; Lüders, Tillmann; Stumpp, Christine

2017-04-01

Riparian zones are important compartments at the interface between groundwater and surface water where biogeochemical processes like denitrification are often enhanced. Nitrate loads of either groundwater entering a stream through the riparian zone or streamwater infiltrating into the riparian zone can be substantially reduced. These processes are spatially and temporally highly variable, making it difficult to capture solute variabilities, estimate realistic turnover rates and thus to quantify integral mass removal. A crucial step towards a more detailed characterization is to monitor solutes on a scale which adequately resemble the highly heterogeneous distribution and on a scale where processes occur. We measured biogeochemical parameters in a spatial high resolution within a riparian corridor of a German lowland river system over the course of one year. Samples were taken from three newly developed high-resolution multi-level wells with a maximum vertical resolution of 5 cm and analyzed for major ions, DOC and N-O isotopes. Sediment derived during installation of the wells was analyzed for specific denitrifying enzymes. Results showed a distinct depth zonation of hydrochemistry within the shallow alluvial aquifer, with a 1 m thick zone just below the water table with lower nitrate concentrations and EC values similar to the nearby river. Conservative parameters were consistent inbetween the three wells, but nitrate was highly variable. In addition, spots with low nitrate concentrations showed isotopic and microbial evidence for higher denitrification activities. The depth zonation was observed throughout the year, with stronger temporal variations of nitrate concentrations just below the water table compared to deeper layers. Nitrate isotopes showed a clear seasonal trend of denitrification activities (high in summer, low in winter). Our dataset gives new insight into river-groundwater exchange processes and shows the highly heterogeneous distribution of

Searching for biogeochemical hot spots in three dimensions: soil C and N cycling in hydropedologic settings in a northern hardwood forest

Science.gov (United States)

J.L. Morse; S.F. Werner; C.P. Gillin; C.L. Goodale; S.W. Bailey; K.J. McGuire; P.M. Groffman

2014-01-01

Understanding and predicting the extent, location, and function of biogeochemical hot spots at the watershed scale is a frontier in environmental science. We applied a hydropedologic approach to identify (1) biogeochemical differences among morphologically distinct hydropedologic settings and (2) hot spots of microbial carbon (C) and nitrogen (N) cycling activity in a...

Factors Influencing Divergent Patterns of Phosphorus Availability in NY and PA Biogeochemical `Hotspots'

Science.gov (United States)

Saia, S. M.; Hofmeister, K.; Regan, J. M.; Buda, A. R.; Carrick, H. J.; Walter, M. T.

2016-12-01

Anthropogenic alteration of the soil phosphorus (P) cycle leads to subsequent water quality issues in agricultural dominated watersheds. In the humid Northeastern United States (NE US), variably saturated areas can generate surface runoff that transports P and stimulates biogeochemical processes; these hydrologically dynamic locations are often called biogeochemical `hotspots'. Many studies have evaluated nitrogen and carbon cycling in biogeochemical hot spots but few have focused on P. We hypothesized seasonally wet parts of the landscape (i.e., hotspots) have smaller biologically available P pools because runoff events frequently carry away nutrients like P. To test this hypothesis, we generated soil wetness index (SWI) maps from soil (SURRGO) and elevation (LiDAR rescaled to 3 m) data and used these maps to direct seasonal soil sampling near Klingerstown, Pennsylvania (PA) and Ithaca, New York (NY). We collected 5cm deep soil samples in PA (bimonthly) and NY (monthly) along soil moisture gradients for a range of land cover types (forest, fallow, and cropped) from May through October. We measured soil moisture in the field and percent organic matter (OM), pH, and three increasingly strong soil P extractions (dilute-salt-extractable P, oxalate-extractable P, and total-extractable P) in the laboratory. Our results indicated a negative relationship between dilute-salt-extractable P concentrations and SWI in PA and no relationship between these same variables in NY. We also found positive relationships between each of the three P extractions in PA but only a positive relationship between oxalate-extractable P and total-extractable P in NY. Our findings in PA support our hypothesis; namely, less biologically available P (i.e. dilute-salt-extractable P) is found in wetter areas of the landscape. However, divergent P availability patterns in NY point to further complexities and confounding variables in our understanding in soil P processes. Further studies will look

University Students' Perceptions of Conflict Resolution

Science.gov (United States)

Scorzelli, James F.

2012-01-01

The purpose of this study was to compare the perceptions of American and international students on conflict resolution, and to determine if the students were willing to participate in conflict resolution. A survey was given to 226 students at an eastern university that asked them to identify a major international conflict and whether they felt…

Tsunami Rapid Assessment Using High Resolution Images and Field Surveys: the 2010 , Central Chile, and the 2011, Tohoku Tsunamis

Science.gov (United States)

Ramirez-Herrera, M.; Navarrete-Pacheco, J.; Lagos, M.; Arcas, D.

2013-12-01

Recent extreme tsunamis have shown their major socioeconomic impact and imprint in the coastal landscape. Extensive destruction, erosion, sediment transport and deposition resculpted coastal landscape within few minutes along hundreds of kilometers of the Central Chile, in 2010, and the Northeast coast of Japan, in 2011. In the central coast of Chile, we performed a post-tsunami survey a week after the tsunami due to access restrictions. Our observations focus on the inundation and geomorphic effects of the 2010 tsunami and included an air reconnaissance flight, analysis of pre- and post-event low fly air-photographs and Google Earth satellite images, together with ground reconnaissance and mapping in the field, including topographic transects, during a period of 13 days. Eyewitness accounts enabled us to confirm our observations on effects produced by the tsunami along ~ 500km along the coastline landscape in central Chile For the Tohoku case study, we assessed in a day tsunami inundation distances and runup heights using satellite data (very high resolution satellite images from the GeoEye1 satellite and from the DigitalGlobe worldview through the Google crisis response project, SRTM and ASTER GDEM) of the Tohoku region, Northeast Japan. Field survey data by Japanese, other international scientists and us validated our results. The rapid assessment of damage using high-resolution images has proven to be an excellent tool neccessary for effcient postsunami surveys as well as for rapid assessment of areas with access restrictions. All countries, in particular those with less access to technology and infrastructure, can benefit from the use of freely available satellite imagery and DEMs for an initial, pre-field survey, rapid estimate of inundated areas, distances and runup, tsunami effects in the coastal geomorphology and for assisting in hazard management and mitigation after a natural disaster. These data provide unprecedented opportunities for rapid assessment

Sorption of organic chemicals at biogeochemical interfaces - calorimetric measurements

Science.gov (United States)

Krüger, J.; Lang, F.; Siemens, J.; Kaupenjohann, M.

2009-04-01

Biogeochemical interfaces in soil act as sorbents for organic chemicals, thereby controlling the degradation and mobility of these substances in terrestrial environments. Physicochemical properties of the organic chemicals and the sorbent determine sorptive interactions. We hypothesize that the sorption of hydrophobic organic chemicals ("R-determined" chemicals) is an entropy-driven partitioning process between the bulk aqueous phase and biogeochemical interface and that the attachment of more polar organic chemicals ("F-determined" chemicals) to mineral surfaces is due to electrostatic interactions and ligand exchange involving functional groups. In order to determine thermodynamic parameters of sorbate/sorbent interactions calorimetric titration experiments have been conducted at 20˚ C using a Nanocalorimeter (TAM III, Thermometric). Solutions of different organic substances ("R-determined" chemicals: phenanthrene, bisphenol A, "F-determined" chemicals: MCPA, bentazone) with concentrations of 100 mol l-1 were added to suspensions of pure minerals (goethite, muscovite, and kaolinite and to polygalacturonic acid (PGA) as model substance for biofilms in soil. Specific surface, porosity, N and C content, particle size and point of zero charge of the mineral were analyzed to characterize the sorbents. The obtained heat quantities for the initial injection of the organic chemicals to the goethite were 55 and 71 J for bisphenol A and phenanthrene ("R-determined representatives") and 92 and 105 J for MCPA and bentazone ("F-determined" representatives). Further experiments with muscovite, kaolinite and PGA are in progress to determine G and H of the adsorption process.

The CARMENES search for exoplanets around M dwarfs. High-resolution optical and near-infrared spectroscopy of 324 survey stars

Science.gov (United States)

Reiners, A.; Zechmeister, M.; Caballero, J. A.; Ribas, I.; Morales, J. C.; Jeffers, S. V.; Schöfer, P.; Tal-Or, L.; Quirrenbach, A.; Amado, P. J.; Kaminski, A.; Seifert, W.; Abril, M.; Aceituno, J.; Alonso-Floriano, F. J.; Ammler-von Eiff, M.; Antona, R.; Anglada-Escudé, G.; Anwand-Heerwart, H.; Arroyo-Torres, B.; Azzaro, M.; Baroch, D.; Barrado, D.; Bauer, F. F.; Becerril, S.; Béjar, V. J. S.; Benítez, D.; Berdinas˜, Z. M.; Bergond, G.; Blümcke, M.; Brinkmöller, M.; del Burgo, C.; Cano, J.; Cárdenas Vázquez, M. C.; Casal, E.; Cifuentes, C.; Claret, A.; Colomé, J.; Cortés-Contreras, M.; Czesla, S.; Díez-Alonso, E.; Dreizler, S.; Feiz, C.; Fernández, M.; Ferro, I. M.; Fuhrmeister, B.; Galadí-Enríquez, D.; Garcia-Piquer, A.; García Vargas, M. L.; Gesa, L.; Galera, V. Gómez; González Hernández, J. I.; González-Peinado, R.; Grözinger, U.; Grohnert, S.; Guàrdia, J.; Guenther, E. W.; Guijarro, A.; Guindos, E. de; Gutiérrez-Soto, J.; Hagen, H.-J.; Hatzes, A. P.; Hauschildt, P. H.; Hedrosa, R. P.; Helmling, J.; Henning, Th.; Hermelo, I.; Hernández Arabí, R.; Hernández Castaño, L.; Hernández Hernando, F.; Herrero, E.; Huber, A.; Huke, P.; Johnson, E. N.; Juan, E. de; Kim, M.; Klein, R.; Klüter, J.; Klutsch, A.; Kürster, M.; Lafarga, M.; Lamert, A.; Lampón, M.; Lara, L. M.; Laun, W.; Lemke, U.; Lenzen, R.; Launhardt, R.; López del Fresno, M.; López-González, J.; López-Puertas, M.; López Salas, J. F.; López-Santiago, J.; Luque, R.; Magán Madinabeitia, H.; Mall, U.; Mancini, L.; Mandel, H.; Marfil, E.; Marín Molina, J. A.; Maroto Fernández, D.; Martín, E. L.; Martín-Ruiz, S.; Marvin, C. J.; Mathar, R. J.; Mirabet, E.; Montes, D.; Moreno-Raya, M. E.; Moya, A.; Mundt, R.; Nagel, E.; Naranjo, V.; Nortmann, L.; Nowak, G.; Ofir, A.; Oreiro, R.; Pallé, E.; Panduro, J.; Pascual, J.; Passegger, V. M.; Pavlov, A.; Pedraz, S.; Pérez-Calpena, A.; Medialdea, D. Pérez; Perger, M.; Perryman, M. A. C.; Pluto, M.; Rabaza, O.; Ramón, A.; Rebolo, R.; Redondo, P.; Reffert, S.; Reinhart, S.; Rhode, P.; Rix, H.-W.; Rodler, F.; Rodríguez, E.; Rodríguez-López, C.; Rodríguez Trinidad, A.; Rohloff, R.-R.; Rosich, A.; Sadegi, S.; Sánchez-Blanco, E.; Sánchez Carrasco, M. A.; Sánchez-López, A.; Sanz-Forcada, J.; Sarkis, P.; Sarmiento, L. F.; Schäfer, S.; Schmitt, J. H. M. M.; Schiller, J.; Schweitzer, A.; Solano, E.; Stahl, O.; Strachan, J. B. P.; Stürmer, J.; Suárez, J. C.; Tabernero, H. M.; Tala, M.; Trifonov, T.; Tulloch, S. M.; Ulbrich, R. G.; Veredas, G.; Vico Linares, J. I.; Vilardell, F.; Wagner, K.; Winkler, J.; Wolthoff, V.; Xu, W.; Yan, F.; Zapatero Osorio, M. R.

2018-04-01

The CARMENES radial velocity (RV) survey is observing 324 M dwarfs to search for any orbiting planets. In this paper, we present the survey sample by publishing one CARMENES spectrum for each M dwarf. These spectra cover the wavelength range 520-1710 nm at a resolution of at least R >80 000, and we measure its RV, Hα emission, and projected rotation velocity. We present an atlas of high-resolution M-dwarf spectra and compare the spectra to atmospheric models. To quantify the RV precision that can be achieved in low-mass stars over the CARMENES wavelength range, we analyze our empirical information on the RV precision from more than 6500 observations. We compare our high-resolution M-dwarf spectra to atmospheric models where we determine the spectroscopic RV information content, Q, and signal-to-noise ratio. We find that for all M-type dwarfs, the highest RV precision can be reached in the wavelength range 700-900 nm. Observations at longer wavelengths are equally precise only at the very latest spectral types (M8 and M9). We demonstrate that in this spectroscopic range, the large amount of absorption features compensates for the intrinsic faintness of an M7 star. To reach an RV precision of 1 m s-1 in very low mass M dwarfs at longer wavelengths likely requires the use of a 10 m class telescope. For spectral types M6 and earlier, the combination of a red visual and a near-infrared spectrograph is ideal to search for low-mass planets and to distinguish between planets and stellar variability. At a 4 m class telescope, an instrument like CARMENES has the potential to push the RV precision well below the typical jitter level of 3-4 m s-1.

Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

NARCIS (Netherlands)

Smith, Pete; Cotrufo, M.F.; Rumpel, C.; Paustian, K.; Kuikman, P.J.

2015-01-01

Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient, and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can

China's land cover and land use change from 1700 to 2005: Estimations from high-resolution satellite data and historical archives

Science.gov (United States)

Liu, Mingliang; Tian, Hanqin

2010-09-01

One of the major limitations in assessing the impacts of human activities on global biogeochemical cycles and climate is a shortage of reliable data on historical land cover and land use change (LCLUC). China had extreme discrepancies in estimating contemporary and historical patterns of LCLUC over the last 3 centuries because of its geographical complexity, long history of land use, and limited national surveys. This study aims to characterize the spatial and temporal patterns of China's LCLUC during 1700-2005 by reconstructing historical gridded data sets from high-resolution satellite data and long-term historical survey data. During this 300 year period, the major characteristics of LCLUC in China have been shrinking forest (decreased by 22%) and expanding cropland (increased by 42%) and urban areas (including urban and rural settlements, factories, quarries, mining, and other built-up land). New cropland areas have come almost equally from both forested and nonforested land. This study also revealed that substantial conversion between forest and woodland can be attributed to forest harvest, forest regeneration, and land degradation. During 1980-2005, LCLUC was characterized by shrinking cropland, expanding urban and forest areas, and large decadal variations on a national level. LCLUC in China showed significant spatial variations during different time periods, which were caused by spatial heterogeneity in vegetation, soils, and climate and regional imbalance in economy development. During 1700-2005, forests shrunk rapidly while croplands expanded in the northeast and southwest of China. During 1980-2005, we found a serious loss of cropland and urban sprawl in the eastern plain, north, and southeast regions of China and a large increase in forested area in the southeast and southwest regions. The reconstructed LCLUC data sets from this study could be used to assess the impacts of land use change on biogeochemical cycles, the water cycle, and the regional

USGS High Resolution Orthoimagery Collection - Historical - National Geospatial Data Asset (NGDA) High Resolution Orthoimagery

Data.gov (United States)

U.S. Geological Survey, Department of the Interior — USGS high resolution orthorectified images from The National Map combine the image characteristics of an aerial photograph with the geometric qualities of a map. An...

Scaling Hydrologic Exchange Flows and Biogeochemical Reactions from Bedforms to Basins

Science.gov (United States)

Harvey, J. W.; Gomez-Velez, J. D.

2015-12-01

River water moves in and out of the main channel along pathways that are perpendicular to the channel's main axis that flow across or beneath the ground surface. These hydrologic exchange flows (HEFs) are difficult to measure, yet no less important than a river's downstream flow, or exchanges with the atmosphere and deeper groundwater (Harvey and Gooseff, 2015, WRR). There are very few comprehensive investigations of exchange fluxes to understand patterns with river size and relative importance of specific types of exchanges. We used the physically based model NEXSS to simulate multiple scales of hyporheic flow and their cumulative effects on solute reaction in large basins (on the order of Chesapeake Bay basin or larger). Our goal was to explain where and when particular types of hyporheic flow are important in enhancing key biogeochemical reactions, such as organic carbon respiration and denitrification. Results demonstrate that hyporheic flux (expressed per unit area of streambed) varies surprisingly little across the continuum of first-order streams to eighth-order rivers, and vertical exchange beneath small bedforms dominates in comparison with lateral flow beneath gravel bars and meanders. Also, the river's entire volume is exchanged many times with hyporheic flow within a basin, and the turnover length (after one entire river volume is exchanged) is strongly influenced by hydrogeomorphic differences between physiographic regions as well as by river size. The cumulative effects on biogeochemical reactions were assessed using a the reaction significance factor, RSF, which computes the cumulative potential for hyporheic reactions using a dimensionless index that balances reaction progress in a single hyporheic flow path against overall processing efficiency of river turnover through hyporheic flow paths of that type. Reaction significance appears to be strongly dominated by hydrologic factors rather than biogeochemical factors, and seems to be dominated by

Mapping pan-Arctic CH4 emissions using an adjoint method by integrating process-based wetland and lake biogeochemical models and atmospheric CH4 concentrations

Science.gov (United States)

Tan, Z.; Zhuang, Q.; Henze, D. K.; Frankenberg, C.; Dlugokencky, E. J.; Sweeney, C.; Turner, A. J.

2015-12-01

Understanding CH4 emissions from wetlands and lakes are critical for the estimation of Arctic carbon balance under fast warming climatic conditions. To date, our knowledge about these two CH4 sources is almost solely built on the upscaling of discontinuous measurements in limited areas to the whole region. Many studies indicated that, the controls of CH4 emissions from wetlands and lakes including soil moisture, lake morphology and substrate content and quality are notoriously heterogeneous, thus the accuracy of those simple estimates could be questionable. Here we apply a high spatial resolution atmospheric inverse model (nested-grid GEOS-Chem Adjoint) over the Arctic by integrating SCIAMACHY and NOAA/ESRL CH4 measurements to constrain the CH4 emissions estimated with process-based wetland and lake biogeochemical models. Our modeling experiments using different wetland CH4 emission schemes and satellite and surface measurements show that the total amount of CH4 emitted from the Arctic wetlands is well constrained, but the spatial distribution of CH4 emissions is sensitive to priors. For CH4 emissions from lakes, our high-resolution inversion shows that the models overestimate CH4 emissions in Alaskan costal lowlands and East Siberian lowlands. Our study also indicates that the precision and coverage of measurements need to be improved to achieve more accurate high-resolution estimates.

Light-Dependent Transcriptional Regulation of Genes of Biogeochemical Interest in the Diploid and Haploid Life Cycle Stages of Emiliania huxleyi▿ †

Science.gov (United States)

Richier, Sophie; Kerros, Marie-Emmanuelle; de Vargas, Colomban; Haramaty, Liti; Falkowski, Paul G.; Gattuso, Jean-Pierre

2009-01-01

The expression of genes of biogeochemical interest in calcifying and noncalcifying life stages of the coccolithophore Emiliania huxleyi was investigated. Transcripts potentially involved in calcification were tested through a light-dark cycle. These transcripts were more abundant in calcifying cells and were upregulated in the light. Their application as potential candidates for in situ biogeochemical proxies is also suggested. PMID:19304825

Mapping rice ecosystem dynamics and greenhouse gas emissions using multiscale imagery and biogeochemical models

Science.gov (United States)

Salas, W.; Torbick, N.

2017-12-01

Rice greenhouse gas (GHG) emissions in production hot spots have been mapped using multiscale satellite imagery and a processed-based biogeochemical model. The multiscale Synthetic Aperture Radar (SAR) and optical imagery were co-processed and fed into a machine leanring framework to map paddy attributes that are tuned using field observations and surveys. Geospatial maps of rice extent, crop calendar, hydroperiod, and cropping intensity were then used to parameterize the DeNitrification-DeComposition (DNDC) model to estimate emissions. Results, in the Red River Detla for example, show total methane emissions at 345.4 million kgCH4-C equivalent to 11.5 million tonnes CO2e (carbon dioxide equivalent). We further assessed the role of Alternative Wetting and Drying and the impact on GHG and yield across production hot spots with uncertainty estimates. The approach described in this research provides a framework for using SAR to derive maps of rice and landscape characteristics to drive process models like DNDC. These types of tools and approaches will support the next generation of Monitoring, Reporting, and Verification (MRV) to combat climate change and support ecosystem service markets.

A Thermodynamically-consistent FBA-based Approach to Biogeochemical Reaction Modeling

Science.gov (United States)

Shapiro, B.; Jin, Q.

2015-12-01

Microbial rates are critical to understanding biogeochemical processes in natural environments. Recently, flux balance analysis (FBA) has been applied to predict microbial rates in aquifers and other settings. FBA is a genome-scale constraint-based modeling approach that computes metabolic rates and other phenotypes of microorganisms. This approach requires a prior knowledge of substrate uptake rates, which is not available for most natural microbes. Here we propose to constrain substrate uptake rates on the basis of microbial kinetics. Specifically, we calculate rates of respiration (and fermentation) using a revised Monod equation; this equation accounts for both the kinetics and thermodynamics of microbial catabolism. Substrate uptake rates are then computed from the rates of respiration, and applied to FBA to predict rates of microbial growth. We implemented this method by linking two software tools, PHREEQC and COBRA Toolbox. We applied this method to acetotrophic methanogenesis by Methanosarcina barkeri, and compared the simulation results to previous laboratory observations. The new method constrains acetate uptake by accounting for the kinetics and thermodynamics of methanogenesis, and predicted well the observations of previous experiments. In comparison, traditional methods of dynamic-FBA constrain acetate uptake on the basis of enzyme kinetics, and failed to reproduce the experimental results. These results show that microbial rate laws may provide a better constraint than enzyme kinetics for applying FBA to biogeochemical reaction modeling.

Biotic and Biogeochemical Feedbacks to Climate Change

Science.gov (United States)

Torn, M. S.; Harte, J.

2002-12-01

Feedbacks to paleoclimate change are evident in ice core records showing correlations of temperature with carbon dioxide, nitrous oxide, and methane. Such feedbacks may be explained by plant and microbial responses to climate change, and are likely to occur under impending climate warming, as evidenced by results of ecosystem climate manipulation experiments and biometeorological observations along ecological and climate gradients. Ecosystems exert considerable influence on climate, by controlling the energy and water balance of the land surface as well as being sinks and sources of greenhouse gases. This presentation will focus on biotic and biogeochemical climate feedbacks on decadal to century time scales, emphasizing carbon storage and energy exchange. In addition to the direct effects of climate on decomposition rates and of climate and CO2 on plant productivity, climate change can alter species composition; because plant species differ in their surface properties, productivity, phenology, and chemistry, climate-induced changes in plant species composition can exert a large influence on the magnitude and sign of climate feedbacks. We discuss the effects of plant species on ecosystem carbon storage that result from characteristic differences in plant biomass and lifetime, allocation to roots vs. leaves, litter quality, microclimate for decomposition and the ultimate stabilization of soil organic matter. We compare the effect of species transitions on transpiration, albedo, and other surface properties, with the effect of elevated CO2 and warming on single species' surface exchange. Global change models and experiments that investigate the effect of climate only on existing vegetation may miss the biggest impacts of climate change on biogeochemical cycling and feedbacks. Quantification of feedbacks will require understanding how species composition and long-term soil processes will change under global warming. Although no single approach, be it experimental

Global biogeochemical provinces of the mesopelagic zone

DEFF Research Database (Denmark)

Reygondeau, Gabriel; Guidi, Lionel; Beaugrand, Gregory

2018-01-01

Aim: Following the biogeographical approach implemented by Longhurst for the epipelagic layer, we propose here to identify a biogeochemical 3-D partition for the mesopelagic layer. The resulting partition characterizes the main deep environmental biotopes and their vertical boundaries on a global...... scale, which can be used as a geographical and ecological framework for conservation biology, ecosystem-based management and for the design of oceanographic investigations. Location: The global ocean. Methods: Based on the most comprehensive environmental climatology available to date, which is both...... of the mesopelagic layer. Results: First, we show via numerical interpretation that the vertical division of the pelagic zone varies and, hence, is not constant throughout the global ocean. Indeed, a latitudinal gradient is found between the epipelagic-mesopelagic and mesopelagic-bathypelagic vertical limits. Second...

Biogeochemical research priorities for sustainable biofuel and bioenergy feedstock production in the Americas

Science.gov (United States)

Hero T. Gollany; Brian D. Titus; D. Andrew Scott; Heidi Asbjornsen; Sigrid C. Resh; Rodney A. Chimner; Donald J. Kaczmarek; Luiz F.C. Leite; Ana C.C. Ferreira; Kenton A. Rod; Jorge Hilbert; Marcelo V. Galdos; Michelle E. Cisz

2015-01-01

Rapid expansion in biomass production for biofuels and bioenergy in the Americas is increasing demand on the ecosystem resources required to sustain soil and site productivity. We review the current state of knowledge and highlight gaps in research on biogeochemical processes and ecosystem sustainability related to biomass production. Biomass production systems...

Effects of Solar UV Radiation and Climate Change on Biogeochemical Cycling: Interactions and Feedbacks

Science.gov (United States)

Solar UV radiation, climate and other drivers of global change are undergoing significant changes and models forecast that these changes will continue for the remainder of this century. Here we assess the effects of solar UV radiation on biogeochemical cycles and the interactions...

Investigation of Artemisia tridentata as a biogeochemical uranium indicator

Energy Technology Data Exchange (ETDEWEB)

Diebold, F E; McGrath, S [Montana Coll. of Mineral Science and Technology, Butte (USA)

1985-01-01

Hydroponic experiments were conducted with seedlings of Artemisia tridentata subsp. tridentata (big sagebrush) to test the effect of the phosphate speciation of uranium in solution on its uptake by big sagebrush. No single complex could be identified as being preferentially taken up by the plant, but the varying aqueous phosphate concentrations did affect uranium uptake by the plants at the higher uranium concentrations in solution. The data also substantiate the tendency for uranium to behave as an essential element in this plant species. The implications for the use of Artemisia tridentata as a biogeochemical uranium indicator are discussed.

Merging high resolution geophysical and geochemical surveys to reduce exploration risk at glass buttes, Oregon

Energy Technology Data Exchange (ETDEWEB)

Walsh, Patrick [Ormat Nevada, Inc., Reno, NV (United States); Fercho, Steven [Ormat Nevada, Inc., Reno, NV (United States); Perkin, Doug [Ormat Nevada, Inc., Reno, NV (United States); Martini, Brigette [Corescan Inc., Ascot (Australia); Boshmann, Darrick [Oregon State Univ., Corvallis, OR (United States)

2015-06-01

The engineering and studies phase of the Glass Buttes project was aimed at reducing risk during the early stages of geothermal project development. The project’s inclusion of high resolution geophysical and geochemical surveys allowed Ormat to evaluate the value of these surveys both independently and in combination to quantify the most valuable course of action for exploration in an area where structure, permeability, and temperature are the most pressing questions. The sizes of the thermal anomalies at Glass Buttes are unusually large. Over the course of Phase I Ormat acquired high resolution LIDAR data to accurately map fault manifestations at the surface and collected detailed gravity and aeromagnetic surveys to map subsurface structural features. In addition, Ormat collected airborne hyperspectral data to assist with mapping the rock petrology and mineral alteration assemblages along Glass Buttes faults and magnetotelluric (MT) survey to try to better constrain the structures at depth. Direct and indirect identification of alteration assemblages reveal not only the geochemical character and temperature of the causative hydrothermal fluids but can also constrain areas of upflow along specific fault segments. All five datasets were merged along with subsurface lithologies and temperatures to predict the most likely locations for high permeability and hot fluids. The Glass Buttes temperature anomalies include 2 areas, totaling 60 km2 (23 mi2) of measured temperature gradients over 165° C/km (10° F/100ft). The Midnight Point temperature anomaly includes the Strat-1 well with 90°C (194 °F) at 603 m (1981 ft) with a 164 °C/km (10°F/100ft) temperature gradient at bottom hole and the GB-18 well with 71°C (160 °F) at 396 m (1300 ft) with a 182°C/km (11°F/100ft) gradient. The primary area of alteration and elevated temperature occurs near major fault intersections associated with Brothers Fault Zone and Basin and Range systems. Evidence for faulting is

Biogeochemical characterization of the Cointzio reservoir (Morelia, Mexico) and identification of a watershed-dependent cycling of nutrients

Science.gov (United States)

Némery, J.; Alvarado, R.; Gratiot, N.; Duvert, C.; Mahé, F.; Duwig, C.; Bonnet, M.; Prat, C.; Esteves, M.

2009-12-01

(June to October) bring a high amount of suspended sediments (up to 50g/L) that transport nutrients such as particulate P. Despite the high turbidity level of the reservoir, chlorophyll a concentrations appear important (70 µg/L during the dry season) especially in the first five meters of the water column. The phytoplankton community is dominated by Euglenophyta and Cyanobacteria groups typical of eutrophic waters. This study is the first complete biogeochemical survey of the Cointzio watershed. Results acquired will be used in a 3D biogeochemical model ELMO (Bonnet and Wessen, 2001) with the objective of providing a quantitative and update analysis of the water quality. The model already reproduced thermal stratification but furthers runs are needed to calibrate the biogeochemical modules and provide an efficient tool to reservoir’s managers.

High-resolution monitoring across the soil-groundwater interface - Revealing small-scale hydrochemical patterns with a novel multi-level well

Science.gov (United States)

Gassen, Niklas; Griebler, Christian; Stumpp, Christine

2016-04-01

Biogeochemical turnover processes in the subsurface are highly variable both in time and space. In order to capture this variability, high resolution monitoring systems are required. Particular in riparian zones the understanding of small-scale biogeochemical processes is of interest, as they are regarded as important buffer zones for nutrients and contaminants with high turnover rates. To date, riparian research has focused on influences of groundwater-surface water interactions on element cycling, but little is known about processes occurring at the interface between the saturated and the unsaturated zone during dynamic flow conditions. Therefore, we developed a new type of high resolution multi-level well (HR-MLW) that has been installed in the riparian zone of the Selke river. This HR-MLW for the first time enables to derive water samples both from the unsaturated and the saturated zone across one vertical profile with a spatial vertical resolution of 0.05 to 0.5 m to a depth of 4 m b.l.s. Water samples from the unsaturated zone are extracted via suction cup sampling. Samples from the saturated zone are withdrawn through glass filters and steel capillaries. Both, ceramic cups and glass filters, are installed along a 1" HDPE piezometer tube. First high resolution hydrochemical profiles revealed a distinct depth-zonation in the riparian alluvial aquifer. A shallow zone beneath the water table carried a signature isotopically and hydrochemically similar to the nearby river, while layers below 1.5 m were influenced by regional groundwater. This zonation showed temporal dynamics related to groundwater table fluctuations and microbial turnover processes. The HR-MLW delivered new insight into mixing and turnover processes between riverwater and groundwater in riparian zones, both in a temporal and spatial dimension. With these new insights, we are able to improve our understanding of dynamic turnover processes at the soil - groundwater interface and of surface

High resolution shear wave reflection surveying for hydrogeological investigations

International Nuclear Information System (INIS)

Johnson, W.J.; Clark, J.C.

1992-08-01

The high resolution S-wave method has been developed to be a powerful tool in mapping subsurface lithology and in conducting groundwater investigations. The research has demonstrated that the resolution obtainable using S-waves in a Coastal Plain environment is more than double than that obtained using conventional reflection, which already offers a higher resolution than any other surface method. Where the mapping of thin clay layers functioning as aquitards or thin sand layers functioning as aquifers are critical to the understanding of groundwater flow, S-wave reflections offer unparalleled possibilities for nondestructive exploration. The field experiment at Cooke Crossroads, South Carolina enabled the detection and mapping of beds in the thickness range of one to three feet. The S-wave reflection technique, in combination with conventional P-wave reflection, has potential to directly detect confined and unconfined aquifers. This is a breakthrough technology that still requires additional research before it can be applied on a commercial basis. Aquifer systems were interpreted from the test data at Cooke Crossroads consistent with theoretical model. Additional research is need in assessing the theoretical response of P- and S-waves to subsurface interfaces within unconsolidated sediments of varying moisture content and lithology. More theoretical modeling and in situ testing are needed to bring our knowledge of these phenomena to the level that oil and gas researchers have done for fluids in sandstones

Biogeochemical cycle of boron in a forest ecosystem: the case study of Montiers beech-stand

International Nuclear Information System (INIS)

Roux, Philippe

2016-01-01

This thesis aims at establishing and understanding the biogeochemical cycle of boron and its isotopes within a forest ecosystem. In that context, many questions remain concerning the dynamics of boron within terrestrial ecosystems: - What are the major sources of boron? - What type of transfer occurs between the compartments of the environment? - What mechanisms are controlling those transfers? In order to establish this biogeochemical cycle, we quantified the different stocks (vegetation, humus and soil) and fluxes (atmospheric dust and dissolved deposition, throughfall, stem-flows, litterfall and drainage) of boron in the study site of Montiers. The use of boron isotopes will give us insight concerning the mechanisms controlling the dynamics of boron. This thesis is divided in 4 main parts: 1. The first part aims at establishing a new method of extraction, purification and measurement of boron and its isotopes within vegetation samples. 2. The second part focuses on the sources and mechanisms controlling boron within atmospheric dust and dissolved deposition on the study site of Montiers. 3. The third part aims at establishing the stocks and fluxes of boron on two distinct soils: a rendisoil (basic pH) and an alocrisoil (acid pH). The goal is to determine the influence of different soil properties on boron dynamics within its biogeochemical cycle. 4. The last part aims at establishing a model of boron and boron isotopes dynamics in the soil plant system. This model is mainly based of the measurement made in 2012. (author) [fr

Connections between physical, optical and biogeochemical processes in the Pacific Ocean

Science.gov (United States)

Xiu, Peng; Chai, Fei

2014-03-01

A new biogeochemical model has been developed and coupled to a three-dimensional physical model in the Pacific Ocean. With the explicitly represented dissolved organic pools, this new model is able to link key biogeochemical processes with optical processes. Model validation against satellite and in situ data indicates the model is robust in reproducing general biogeochemical and optical features. Colored dissolved organic matter (CDOM) has been suggested to play an important role in regulating underwater light field. With the coupled model, physical and biological regulations of CDOM in the euphotic zone are analyzed. Model results indicate seasonal variability of CDOM is mostly determined by biological processes, while the importance of physical regulation manifests in the annual mean terms. Without CDOM attenuating light, modeled depth-integrated primary production is about 10% higher than the control run when averaged over the entire basin, while this discrepancy is highly variable in space with magnitudes reaching higher than 100% in some locations. With CDOM dynamics integrated in physical-biological interactions, a new mechanism by which physical processes affect biological processes is suggested, namely, physical transport of CDOM changes water optical properties, which can further modify underwater light field and subsequently affect the distribution of phytoplankton chlorophyll. This mechanism tends to occur in the entire Pacific basin but with strong spatial variability, implying the importance of including optical processes in the coupled physical-biogeochemical model. If ammonium uptake is sufficient to permit utilization of DOM, that is, UB∗⩾-U{U}/{U}-{(1-r_b)}/{RB}, then bacteria uptake of DOM has the form of FB=(1-r_b){U}/{RB}, bacteria respiration, SB=r_b×U, remineralization by bacteria, EB=UC{UN}/{UC}-{(1-r_b)}/{RB}. If EB > 0, then UB = 0; otherwise, UB = -EB. If there is insufficient ammonium, that is, UB∗CO2 is calculated using the

Searching for Biogeochemical Cycles on Mars

Science.gov (United States)

DesMarais, David J.

1997-01-01

The search for life on Mars clearly benefits from a rigorous, yet broad, definition of life that compels us to consider all possible lines of evidence for a martian biosphere. Recent studies in microbial ecology illustrate that the classic definition of life should be expanded beyond the traditional definition of a living cell. The traditional defining characteristics of life are threefold. First, life is capable of metabolism, that is, it performs chemical reactions that utilize energy and also synthesize its cellular constituents. Second, life is capable of self-replication. Third, life can evolve in order to adapt to environmental changes. An expanded, ecological definition of life also recognizes that life is a community of organisms that must interact with their nonliving environment through processes called biogeochemical cycles. This regenerative processing maintains, in an aqueous conditions, a dependable supply of nutrients and energy for growth. In turn, life can significantly affect those processes that control the exchange of materials between the atmosphere, ocean, and upper crust. Because metabolic processes interact directly with the environment, they can alter their surroundings and thus leave behind evidence of life. For example, organic matter is produced from single-carbon-atom precursors for the biosynthesis of cellular constituents. This leads to a reservoir of reduced carbon in sediments that, in turn, can affect the oxidation state of the atmosphere. The harvesting of chemical energy for metabolism often employs oxidation-reduction reactions that can alter the chemistry and oxidation state of the redox-sensitive elements carbon, sulfur, nitrogen, iron, and manganese. Have there ever been biogeochemical cycles on Mars? Certain key planetary processes can offer clues. Active volcanism provides reduced chemical species that biota can use for organic synthesis. Volcanic carbon dioxide and methane can serve as greenhouse gases. Thus the

Modelling benthic biophysical drivers of ecosystem structure and biogeochemical response

Science.gov (United States)

Stephens, Nicholas; Bruggeman, Jorn; Lessin, Gennadi; Allen, Icarus

2016-04-01

The fate of carbon deposited at the sea floor is ultimately decided by biophysical drivers that control the efficiency of remineralisation and timescale of carbon burial in sediments. Specifically, these drivers include bioturbation through ingestion and movement, burrow-flushing and sediment reworking, which enhance vertical particulate transport and solute diffusion. Unfortunately, these processes are rarely satisfactorily resolved in models. To address this, a benthic model that explicitly describes the vertical position of biology (e.g., habitats) and biogeochemical processes is presented that includes biological functionality and biogeochemical response capturing changes in ecosystem structure, benthic-pelagic fluxes and biodiversity on inter-annual timescales. This is demonstrated by the model's ability to reproduce temporal variability in benthic infauna, vertical pore water nutrients and pelagic-benthic solute fluxes compared to in-situ data. A key advance is the replacement of bulk parameterisation of bioturbation by explicit description of the bio-physical processes responsible. This permits direct comparison with observations and determination of key parameters in experiments. Crucially, the model resolves the two-way interaction between sediment biogeochemistry and ecology, allowing exploration of the benthic response to changing environmental conditions, the importance of infaunal functional traits in shaping benthic ecological structure and the feedback the resulting bio-physical processes exert on pore water nutrient profiles. The model is actively being used to understand shelf sea carbon cycling, the response of the benthos to climatic change, food provision and other societal benefits.

Using NEON Data to Test and Refine Conceptual and Numerical Models of Soil Biogeochemical and Microbial Dynamics

Science.gov (United States)

Weintraub, S. R.; Stanish, L.; Ayers, E.

2017-12-01

Recent conceptual and numerical models have proposed new mechanisms that underpin key biogeochemical phenomena, including soil organic matter storage and ecosystem response to nitrogen deposition. These models seek to explicitly capture the ecological links among biota, especially microbes, and their physical and chemical environment to represent belowground pools and fluxes and how they respond to perturbation. While these models put forth exciting new concepts, their broad predictive abilities are unclear as some have been developed and tested against only small or regional datasets. The National Ecological Observatory Network (NEON) presents new opportunities to test and validate these models with multi-site data that span wide climatic, edaphic, and ecological gradients. NEON is measuring surface soil biogeochemical pools and fluxes along with diversity, abundance, and functional potential of soil microbiota at 47 sites distributed across the United States. This includes co-located measurements of soil carbon and nitrogen concentrations and stable isotopes, net nitrogen mineralization and nitrification rates, soil moisture, pH, microbial biomass, and community composition via 16S and ITS rRNA sequencing and shotgun metagenomic analyses. Early NEON data demonstrates that these wide edaphic and climatic gradients are related to changes in microbial community structure and functional potential, as well as element pools and process rates. Going forward, NEON's suite of standardized soil data has the potential to advance our understanding of soil communities and processes by allowing us to test the predictions of new soil biogeochemical frameworks and models. Here, we highlight several recently developed models that are ripe for this kind of data validation, and discuss key insights that may result. Further, we explore synergies with other networks, such as (i)LTER and (i)CZO, which may increase our ability to advance the frontiers of soil biogeochemical modeling.

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

Science.gov (United States)

Anantharaman, Karthik; Brown, Christopher T.; Hug, Laura A.; Sharon, Itai; Castelle, Cindy J.; Probst, Alexander J.; Thomas, Brian C.; Singh, Andrea; Wilkins, Michael J.; Karaoz, Ulas; Brodie, Eoin L.; Williams, Kenneth H.; Hubbard, Susan S.; Banfield, Jillian F.

2016-01-01

The subterranean world hosts up to one-fifth of all biomass, including microbial communities that drive transformations central to Earth's biogeochemical cycles. However, little is known about how complex microbial communities in such environments are structured, and how inter-organism interactions shape ecosystem function. Here we apply terabase-scale cultivation-independent metagenomics to aquifer sediments and groundwater, and reconstruct 2,540 draft-quality, near-complete and complete strain-resolved genomes that represent the majority of known bacterial phyla as well as 47 newly discovered phylum-level lineages. Metabolic analyses spanning this vast phylogenetic diversity and representing up to 36% of organisms detected in the system are used to document the distribution of pathways in coexisting organisms. Consistent with prior findings indicating metabolic handoffs in simple consortia, we find that few organisms within the community can conduct multiple sequential redox transformations. As environmental conditions change, different assemblages of organisms are selected for, altering linkages among the major biogeochemical cycles. PMID:27774985

Investigation of In-situ Biogeochemical Reduction of Chlorinated Solvents in Groundwater by Reduced Iron Minerals

Science.gov (United States)

Biogeochemical transformation is a process in which chlorinated solvents are degraded abiotically by reactive minerals formed by, at least in part or indirectly from, anaerobic biological processes. Five mulch biowall and/or vegetable oil-based bioremediation applications for tr...

Hydrogeological and biogeochemical constrains of arsenic mobilization in shallow aquifers from the Hetao basin, Inner Mongolia

International Nuclear Information System (INIS)

Guo Huaming; Zhang Bo; Li Yuan; Berner, Zsolt; Tang Xiaohui; Norra, Stefan; Stueben, Doris

2011-01-01

Little is known about the importance of drainage/irrigation channels and biogeochemical processes in arsenic distribution of shallow groundwaters from the Hetao basin. This investigation shows that although As concentrations are primarily dependent on reducing conditions, evaporation increases As concentration in the centre of palaeo-lake sedimentation. Near drainage channels, groundwater As concentrations are the lowest in suboxic-weakly reducing conditions. Results demonstrate that both drainage and irrigation channels produce oxygen-rich water that recharges shallow groundwaters and therefore immobilize As. Groundwater As concentration increases with a progressive decrease in redox potential along the flow path in an alluvial fan. A negative correlation between SO 4 2- concentrations and δ 34 S values indicates that bacterial reduction of SO 4 2- occurs in reducing aquifers. Due to high concentrations of Fe (>0.5 mg L -1 ), reductive dissolution of Fe oxides is believed to cause As release from aquifer sediments. Target aquifers for safe drinking water resources are available in alluvial fans and near irrigation channels. - Research highlights: → Low As groundwaters occur in alluvial fans. → We find low As groundwaters near irrigation and drainage channels. → Both hydrogeologic conditions and biogeochemical processes control As distribution. - Both hydrogeologic conditions and biogeochemical processes control As distribution of shallow groundwaters, which results in the occurrence of low As groundwater in alluvial fans and near irrigation channels and drainage channels.

Drought Conditions Maximize the Impact of High-Frequency Flow Variations on Thermal Regimes and Biogeochemical Function in the Hyporheic Zone.

Energy Technology Data Exchange (ETDEWEB)

None, None

2017-03-01

Anthropogenic activities, such as dam operations, often induce larger and more frequent stage fluctuations than those occurring in natural rivers. However, the long-term impact of such flow variations on thermal and biogeochemical dynamics of the associated hyporheic zone (HZ) is poorly understood. A heterogeneous, two-dimensional thermo-hydro-biogeochemical model revealed an important interaction between high-frequency flow variations and watershed-scale hydrology. High-frequency stage fluctuations had their strongest thermal and biogeochemical impacts when the mean river stage was low during fall and winter. An abnormally thin snowpack in 2015, however, created a low river stage during summer and early fall, whereby high frequency stage fluctuations caused the HZ to be warmer than usual. This study provided the scientific basis to assess the potential ecological consequences of the high-frequency flow variations in a regulated river, as well as guidance on how to maximize the potential benefits—or minimize the drawbacks—of river regulation to river ecosystems.

Analysis of Alabama Airborne Gravity at Three Altitudes: Expected Accuracy and Spatial Resolution from a Future Tibetan Airborne Gravity Survey

Directory of Open Access Journals (Sweden)

Chi-Hsun Huang

2013-01-01

Full Text Available In situ airborne gravity data at altitudes of 11, 6.3, and 1.7 km over a smooth area of Alabama are used to assess gravity accuracy and errors in upward and downward continuations. Analysis of the Alabama free-air anomaly gravity data at crossover points at the three altitudes suggests 1 - 2 mgal accuracy for the dataset. Gravity data at each altitude are then expanded into local 3D Fourier series, to prepare for continuation. This Fourier representation results in continuation errors at few-mgal level in Alabama, even in the extreme case of downward continuation from 11 km to sea level. The result in Alabama inspires an airborne gravity survey over the rough, inaccessible terrain of Tibet. Similar investigations as in Alabama are made in Tibet using EGM08-derived airborne gravity data at flight altitudes of 10, 5, and 0 km. Bouguer anomalies at the 10-km altitude preserve the major tectonic features of Tibet. Downward continuation errors increase with terrain roughness, but the survey can enhance local tectonic features. This study highlights the value of a future Tibetan airborne gravity survey and points out the expected gravity accuracy and spatial resolution from this survey.

Reactive transport modelling of biogeochemical processes and carbon isotope geochemistry inside a landfill leachate plume.

NARCIS (Netherlands)

van Breukelen, B.M.; Griffioen, J.; Roling, W.F.M.; van Verseveld, H.W.

2004-01-01

The biogeochemical processes governing leachate attenuation inside a landfill leachate plume (Banisveld, the Netherlands) were revealed and quantified using the 1D reactive transport model PHREEQC-2. Biodegradation of dissolved organic carbon (DOC) was simulated assuming first-order oxidation of two

Physical and biogeochemical controls on light attenuation in a eutrophic, back-barrier estuary

Science.gov (United States)

Ganju, Neil K.; Miselis, Jennifer L.; Aretxabaleta, Alfredo L.

2014-01-01

Light attenuation is a critical parameter governing the ecological function of shallow estuaries. In these systems primary production is often dominated by benthic macroalgae and seagrass; thus light penetration to the bed is of primary importance. We quantified light attenuation in three seagrass meadows in Barnegat Bay, New Jersey, a shallow eutrophic back-barrier estuary; two of the sites were located within designated Ecologically Sensitive Areas (ESAs). We sequentially deployed instrumentation measuring photosynthetically active radiation, chlorophyll-a (chl-a) fluorescence, dissolved organic matter fluorescence (fDOM; a proxy for colored DOM absorbance), turbidity, pressure, and water velocity at 10 min intervals over three week periods at each site. At the southernmost site, where sediment availability was highest, light attenuation was highest and dominated by turbidity and to a lesser extent chl-a and CDOM. At the central site, chl-a dominated followed by turbidity and CDOM, and at the northernmost site turbidity and CDOM contributed equally to light attenuation. At a given site, the temporal variability of light attenuation exceeded the difference in median light attenuation at the three sites, indicating the need for continuous high-temporal resolution measurements. Vessel wakes, anecdotally implicated in increasing sediment resuspension, did not contribute to local resuspension within the seagrass beds, though frequent vessel wakes were observed in the channels. With regards to light attenuation and water clarity, physical and biogeochemical variables appear to outweigh any regulation of boat traffic within the ESAs.

Lichen biogeochemical and spatial dynamics in canopies of Eastern white pine (Pinus strobus)

Science.gov (United States)

Laughlin, M. M.; Martin, J.; Olson, E.

2017-12-01

Forest canopies have been shown to contain complex ecosystem level processes but much of this work is from the tropics or the charismatic tall trees of Oceana and the Pacific Northwestern US. However, many of the processes can occur in other species of trees that are not as tall, as old, nor as surrounded by biological diversity. Such an occurrence is within the lichen diversity and coverage of Eastern white pines (Pinus strobus) in the Lake States region of the US. We used arborist techniques to scale, survey, and document the lichen abundance in three large and regionally old trees (diameter at breast height 70-80+cm, 30m in height, and 100 to 115 years old). These trees represent the first generation of second growth forests to reclaim the landscape following the massive cutover period in the region from 1880s to the 1910s. We surveyed the stem in framed quadrats in the four cardinal directions at every 2 meters, as well as various branch locations, and used digital photographs and image analysis software to quantify coverage. Lichen coverage ranged from 0% to over 50% and increased with height indicating: (1) possible light limitations or bark suitability limitations near the ground, and (2) that conditions, not time, may be more important for lichen abundance. Lastly, because lichens can fix atmospheric nitrogen and absorb substantial amounts of water, we scaled the coverage of lichen to determine the total nitrogen pool and water holding capacity in the footprint of these large trees. The vertical structure of these large trees helps add to these biogeochemical pools and may be an important consideration for management and restoration efforts aimed at slowing nutrient and water loss from upland forests.

PISCES-v2: an ocean biogeochemical model for carbon and ecosystem studies

Directory of Open Access Journals (Sweden)

O. Aumont

2015-08-01

of marine ecosystems (phytoplankton, microzooplankton and mesozooplankton and the biogeochemical cycles of carbon and of the main nutrients (P, N, Fe, and Si. The model is intended to be used for both regional and global configurations at high or low spatial resolutions as well as for short-term (seasonal, interannual and long-term (climate change, paleoceanography analyses. There are 24 prognostic variables (tracers including two phytoplankton compartments (diatoms and nanophytoplankton, two zooplankton size classes (microzooplankton and mesozooplankton and a description of the carbonate chemistry. Formulations in PISCES-v2 are based on a mixed Monod–quota formalism. On the one hand, stoichiometry of C / N / P is fixed and growth rate of phytoplankton is limited by the external availability in N, P and Si. On the other hand, the iron and silicon quotas are variable and the growth rate of phytoplankton is limited by the internal availability in Fe. Various parameterizations can be activated in PISCES-v2, setting, for instance, the complexity of iron chemistry or the description of particulate organic materials. So far, PISCES-v2 has been coupled to the Nucleus for European Modelling of the Ocean (NEMO and Regional Ocean Modeling System (ROMS systems. A full description of PISCES-v2 and of its optional functionalities is provided here. The results of a quasi-steady-state simulation are presented and evaluated against diverse observational and satellite-derived data. Finally, some of the new functionalities of PISCES-v2 are tested in a series of sensitivity experiments.

High-Resolution Seafloor Observations of an Active Mud Volcano Offshore SW Taiwan - Results of a Repeated Survey after Four Years

Science.gov (United States)

Hsu, H. H.; Chen, T. T.; Liu, C. S.; Su, C. C.; Paull, C. K.; Caress, D. W.; Gwiazda, R.; Chen, Y. H.

2017-12-01

Mud Volcano V (MV5) is an active submarine mud volcano sitting on top of a mud diapir ridge at water depths of 600 m in the active margin offshore of southwestern Taiwan. This cone-shape mud volcano is almost 3-km-wide, 200-m-high, with 9.5° slopes, and explosively ejects streams of mud every 1.5-3 minutes. It was first mapped in 2013 with MBARI's mapping AUV (autonomous underwater vehicle). In 2017, a repeated AUV mapping survey was conducted to see if significant bathymetric changes took place since 2013, and to investigate the fluxes of fluids that pass through diapiric structures in an active continental margin. In addition to high-resolution bathymetry (1-m-resolution), sub-bottom profiling and side-scan sonar data acquired by the AUV, and videos and samples collected by MBARI's miniROV, we also incorporate multichannel seismic reflection data and gravity core sample analyses in this study. AUV bathymetry data reveal that there are two gryphons on the eastern slope of MV5. In the 2017 survey the mapped sizes of the two side cones were 80 m wide, 35 m long, 20 m relief and 40 m wide, 40 m long, 12 m relief, respectively. Comparing the bathymetry mapped in the 2017 AUV survey with that surveyed in 2013, no obvious overall morphological changes in MV5 are detected, except around the two gryphons. In the time period between the surveys, due to venting of mud from the two gryphons, two series of flow deposits which can be up to 5 meters thick are observed along the slope in the east side of both gryphons. The center depressions of these two gryphons have increased by 1-5 meters depth in their west side. Seismic and sub-bottom profiles reveal amplitude anomalies in the sub-strata of MV5 which indicate possible fluid migration paths of mud flows from deep. The trace of mud flow from the top of MV5 to its foot can be delineated from the side-scan sonar images. On the basis of 210Pbex chronology dating method, the sedimentation rate on the surface of MV5 is very slow

Terrestrial biogeochemical feedbacks in the climate system: from past to future

Energy Technology Data Exchange (ETDEWEB)

Arneth, A.; Harrison, S. P.; Zaehle, S.; Tsigaridis, K; Menon, S; Bartlein, P.J.; Feichter, J; Korhola, A; Kulmala, M; O' Donnell, D; Schurgers, G; Sorvari, S; Vesala, T

2010-01-05

The terrestrial biosphere plays a major role in the regulation of atmospheric composition, and hence climate, through multiple interlinked biogeochemical cycles (BGC). Ice-core and other palaeoenvironmental records show a fast response of vegetation cover and exchanges with the atmosphere to past climate change, although the phasing of these responses reflects spatial patterning and complex interactions between individual biospheric feedbacks. Modern observations show a similar responsiveness of terrestrial biogeochemical cycles to anthropogenically-forced climate changes and air pollution, with equally complex feedbacks. For future conditions, although carbon cycle-climate interactions have been a major focus, other BGC feedbacks could be as important in modulating climate changes. The additional radiative forcing from terrestrial BGC feedbacks other than those conventionally attributed to the carbon cycle is in the range of 0.6 to 1.6 Wm{sup -2}; all taken together we estimate a possible maximum of around 3 Wm{sup -2} towards the end of the 21st century. There are large uncertainties associated with these estimates but, given that the majority of BGC feedbacks result in a positive forcing because of the fundamental link between metabolic stimulation and increasing temperature, improved quantification of these feedbacks and their incorporation in earth system models is necessary in order to develop coherent plans to manage ecosystems for climate mitigation.

The all-sky 408 MHz survey

International Nuclear Information System (INIS)

Haslam, C.G.T.; Salter, C.J.; Stoffel, H.

1981-01-01

A brief outline of the results of this survey is presented. The 408 MHz All-sky Survey has been made from four radio continuum surveys observed between 1965 and 1978, using the Jodrell Bank MKI telescope (Haslam et al., 1970), the Effelsberg 100 metre telescope (Haslam et al., 1974) and the Parkes 64 metre telescope (Haslam et al., 1975). A detailed description of the survey data reduction and calibration methods, with preliminary astronomical results will soon be published (Haslam et al., 1980a) and a second paper will give an atlas of maps at the full survey resolution of 51' arc between half power points (Haslam et al., 1980b). A map, smoothed to a gaussian beam with resolution between half power poitns of 3 0 , is presented. (Auth.)

Natural and drought scenarios in an east central Amazon forest: Fidelity of the Community Land Model 3.5 with three biogeochemical models

Science.gov (United States)

Sakaguchi, Koichi; Zeng, Xubin; Christoffersen, Bradley J.; Restrepo-Coupe, Natalia; Saleska, Scott R.; Brando, Paulo M.

2011-03-01

Recent development of general circulation models involves biogeochemical cycles: flows of carbon and other chemical species that circulate through the Earth system. Such models are valuable tools for future projections of climate, but still bear large uncertainties in the model simulations. One of the regions with especially high uncertainty is the Amazon forest where large-scale dieback associated with the changing climate is predicted by several models. In order to better understand the capability and weakness of global-scale land-biogeochemical models in simulating a tropical ecosystem under the present day as well as significantly drier climates, we analyzed the off-line simulations for an east central Amazon forest by the Community Land Model version 3.5 of the National Center for Atmospheric Research and its three independent biogeochemical submodels (CASA', CN, and DGVM). Intense field measurements carried out under Large Scale Biosphere-Atmosphere Experiment in Amazonia, including forest response to drought from a throughfall exclusion experiment, are utilized to evaluate the whole spectrum of biogeophysical and biogeochemical aspects of the models. Our analysis shows reasonable correspondence in momentum and energy turbulent fluxes, but it highlights three processes that are not in agreement with observations: (1) inconsistent seasonality in carbon fluxes, (2) biased biomass size and allocation, and (3) overestimation of vegetation stress to short-term drought but underestimation of biomass loss from long-term drought. Without resolving these issues the modeled feedbacks from the biosphere in future climate projections would be questionable. We suggest possible directions for model improvements and also emphasize the necessity of more studies using a variety of in situ data for both driving and evaluating land-biogeochemical models.

Biogeochemical features technogenic pollution of soils under the influence chemical industry

Directory of Open Access Journals (Sweden)

Kuraeva I.V.

2015-09-01

Full Text Available The physico-chemical properties of soil (pH, organic matter content, cation exchange capacity. The regularities of the distribution of total and mobile forms of heavy metals in soil sediments in the territory of Shostka Sumy region under the influence of the chemical industry and in the background areas. Biogeochemical indicators obtained content of microscopic fungi and their species, the most characteristic of the study of soils, which can be used as an additional criterion for ecological and geochemical studies.

Temporal dynamics of biogeochemical processes at the Norman Landfill site

Science.gov (United States)

Arora, Bhavna; Mohanty, Binayak P.; McGuire, Jennifer T.; Cozzarelli, Isabelle M.

2013-01-01

The temporal variability observed in redox sensitive species in groundwater can be attributed to coupled hydrological, geochemical, and microbial processes. These controlling processes are typically nonstationary, and distributed across various time scales. Therefore, the purpose of this study is to investigate biogeochemical data sets from a municipal landfill site to identify the dominant modes of variation and determine the physical controls that become significant at different time scales. Data on hydraulic head, specific conductance, δ2H, chloride, sulfate, nitrate, and nonvolatile dissolved organic carbon were collected between 1998 and 2000 at three wells at the Norman Landfill site in Norman, OK. Wavelet analysis on this geochemical data set indicates that variations in concentrations of reactive and conservative solutes are strongly coupled to hydrologic variability (water table elevation and precipitation) at 8 month scales, and to individual eco-hydrogeologic framework (such as seasonality of vegetation, surface-groundwater dynamics) at 16 month scales. Apart from hydrologic variations, temporal variability in sulfate concentrations can be associated with different sources (FeS cycling, recharge events) and sinks (uptake by vegetation) depending on the well location and proximity to the leachate plume. Results suggest that nitrate concentrations show multiscale behavior across temporal scales for different well locations, and dominant variability in dissolved organic carbon for a closed municipal landfill can be larger than 2 years due to its decomposition and changing content. A conceptual framework that explains the variability in chemical concentrations at different time scales as a function of hydrologic processes, site-specific interactions, and/or coupled biogeochemical effects is also presented.

In Situ Biogeochemical Treatment Demonstration: Lessons Learned from ESTCP Project ER 201124

Science.gov (United States)

2015-12-09

native soil from the site amended with iron oxides at 3% concentration, electron donors, and sulfate (1,000 mg/L) to simulate an injection strategy...for biogeochemical transformation. Reactor # 2 (Abiotic Mulch) contained sand, mulch, vegetable oil (1%), iron oxides (3%), and sulfate (to simulate ...vegetable oil fermentation to volatile fatty acids (VFA) also likely reduced the pH and this change could have reduced the FeS reactivity. 2.3.5

The Good, the Bad and the Ugly - Interacting Physical, Biogeochemical and Biolological Controls of Nutrient Cycling at Ecohydrological Interfaces

Science.gov (United States)

Krause, S.; Baranov, V. A.; Lewandowski, J.; Blaen, P. J.; Romeijn, P.

2016-12-01

The interfaces between streams, lakes and their bed sediments have for a long time been in the research focus of ecohydrologists, aquatic ecologists and biogeochemists. While over the past decades, critical understanding has been gained of the spatial patterns and temporal dynamics in nutrient cycling at sediment-freshwater interfaces, important question remain as to the actual drivers (physical, biogeochemical and biological) of the often observed hot spots and hot moments of nutrient cycling at these highly reactive systems. This study reports on a combination of laboratory manipulation, artificial stream and field experiments from reach to river network scales to investigate the interplay of physical, biogeochemical and biological drivers of interface nutrient cycling under the impact of and resilience to global environmental change. Our results indicate that biogeochemical hotspots at sediment-freshwater interfaces were controlled not only by reactant mixing ratios and residence time distributions, but strongly affected by patterns in streambed physical properties and bioavailability of organic carbon. Lab incubation experiments revealed that geology, and in particular organic matter content strongly controlled the magnitude of enhanced streambed greenhouse gas production caused by increasing water temperatures. While these findings help to improve our understanding of physical and biogeochemical controls on nutrient cycling, we only start to understand to what degree biological factors can enhance these processes even further. We found that for instance chironomid or brittle star facilitated bioturbation in has the potential to substantially enhance freshwater or marine sediment pore-water flow and respiration. We revealed that ignorance of these important biologically controls on physical exchange fluxes can lead to critical underestimation of whole system respiration and its increase under global environmental change.

The High-Resolution IRAS Galaxy Atlas

Science.gov (United States)

Cao, Yu; Terebey, Susan; Prince, Thomas A.; Beichman, Charles A.; Oliversen, R. (Technical Monitor)

1997-01-01

An atlas of the Galactic plane (-4.7 deg is less than b is less than 4.7 deg), along with the molecular clouds in Orion, rho Oph, and Taurus-Auriga, has been produced at 60 and 100 microns from IRAS data. The atlas consists of resolution-enhanced co-added images with 1 min - 2 min resolution and co-added images at the native IRAS resolution. The IRAS Galaxy Atlas, together with the Dominion Radio Astrophysical Observatory H(sub I) line/21 cm continuum and FCRAO CO (1-0) Galactic plane surveys, which both have similar (approx. 1 min) resolution to the IRAS atlas, provides a powerful tool for studying the interstellar medium, star formation, and large-scale structure in our Galaxy. This paper documents the production and characteristics of the atlas.

An introduction to high-frequency nutrient and biogeochemical monitoring for the Sacramento–San Joaquin Delta, northern California

Science.gov (United States)

Kraus, Tamara E.C.; Bergamaschi, Brian A.; Downing, Bryan D.

2017-07-11

Executive SummaryThis report is the first in a series of three reports that provide information about high-frequency (HF) nutrient and biogeochemical monitoring in the Sacramento–San Joaquin Delta of northern California (Delta). This first report provides an introduction to the reasons for and fundamental concepts behind collecting HF measurements, and describes the benefits associated with a real-time, continuous, HF, multi-parameter water quality monitoring station network that is co-located with flow stations. It then provides examples of how HF nutrient measurements have improved our understating of nutrient sources and cycling in aquatic systems worldwide, followed by specific examples from the Delta. These examples describe the ways in which HF instrumentation may be used for both fixed-station and spatial assessments. The overall intent of this document is to describe how HF measurements currently (2017) are being used in the Delta to examine the relationship between nutrient concentrations, nutrient cycling, and aquatic habitat conditions.The second report in the series (Downing and others, 2017) summarizes information about HF nutrient and associated biogeochemical monitoring in the northern Delta. The report synthesizes data available from the nutrient and water quality monitoring network currently operated by the U.S. Geological Survey in this ecologically important region of the Delta. In the report, we present and discuss the available data at various timescales—first, at the monthly, seasonal, and inter-annual timescales; and, second, for comparison, at the tidal and event (for example, storms, reservoir releases, phytoplankton blooms) timescales. As expected, we determined that there is substantial variability in nitrate concentrations at short timescales within hours, but also significant variability at longer timescales such as months or years. This multi-scale, high variability affects calculation of fluxes and loads, indicating that HF

Close-range airborne Structure-from-Motion Photogrammetry for high-resolution beach morphometric surveys: Examples from an embayed rotating beach

Science.gov (United States)

Brunier, Guillaume; Fleury, Jules; Anthony, Edward J.; Gardel, Antoine; Dussouillez, Philippe

2016-05-01

The field of photogrammetry has seen significant new developments essentially related to the emergence of new computer-based applications that have fostered the growth of the workflow technique called Structure-from-Motion (SfM). Low-cost, user-friendly SfM photogrammetry offers interesting new perspectives in coastal and other fields of geomorphology requiring high-resolution topographic data. The technique enables the construction of topographic products such as digital surface models (DSMs) and orthophotographs, and combines the advantages of the reproducibility of GPS surveys and the high density and accuracy of airborne LiDAR, but at very advantageous cost compared to the latter. Three SfM-based photogrammetric experiments were conducted on the embayed beach of Montjoly in Cayenne, French Guiana, between October 2013 and 2014, in order to map morphological changes and quantify sediment budgets. The beach is affected by a process of rotation induced by the alongshore migration of mud banks from the mouths of the Amazon River that generate spatial and temporal changes in wave refraction and incident wave angles, thus generating the reversals in longshore drift that characterise this process. Sub-vertical aerial photographs of the beach were acquired from a microlight aircraft that flew alongshore at low elevation (275 m). The flight plan included several parallel flight axes with an overlap of 85% between pictures in the lengthwise direction and 50% between paths. Targets of 40 × 40 cm, georeferenced by RTK-DGPS, were placed on the beach, spaced 100 m apart. These targets served in optimizing the model and in producing georeferenced 3D products. RTK-GPS measurements of random points and cross-shore profiles were used to validate the photogrammetry results and assess their accuracy. We produced dense point clouds with 150 to 200 points/m², from which we generated DSMs and orthophotos with respective resolutions of 10 cm and 5 cm. Compared to the GPS control

Oceanographic and Biogeochemical Insights from Diatom Genomes

Science.gov (United States)

Bowler, Chris; Vardi, Assaf; Allen, Andrew E.

2010-01-01

Diatoms are the most successful group of eukaryotic phytoplankton in the modern ocean and have risen to dominance relatively quickly over the last 100 million years. Recently completed whole genome sequences from two species of diatom, Thalassiosira pseudonana and Phaeodactylum tricornutum, have revealed a wealth of information about the evolutionary origins and metabolic adaptations that have led to their ecological success. A major finding is that they have incorporated genes both from their endosymbiotic ancestors and by horizontal gene transfer from marine bacteria. This unique melting pot of genes encodes novel capacities for metabolic management, for example, allowing the integration of a urea cycle into a photosynthetic cell. In this review we show how genome-enabled approaches are being leveraged to explore major phenomena of oceanographic and biogeochemical relevance, such as nutrient assimilation and life histories in diatoms. We also discuss how diatoms may be affected by climate change-induced alterations in ocean processes.

Biogeochemical reactive-diffusive transport of heavy metals in Lake Coeur d'Alene sediments

International Nuclear Information System (INIS)

Sevinc Sengoer, S.; Spycher, Nicolas F.; Ginn, Timothy R.; Sani, Rajesh K.; Peyton, Brent

2007-01-01

Decades of runoff from precious-metal mining operations in the Lake Coeur d'Alene Basin, Idaho, have left the sediments in this lake heavily enriched with toxic metals, most notably Zn, Pb and Cu, together with As. The bioavailability, fate and transport of these metals in the sediments are governed by complex biogeochemical processes. In particular, indigenous microbes are capable of catalyzing reactions that detoxify their environments, and thus constitute an important driving component in the biogeochemical cycling of these metals. Here, the development of a quantitative model to evaluate the transport and fate of Zn, Pb and Cu in Lake Coeur d'Alene sediments is reported. The current focus is on the investigation and understanding of local-scale processes, rather than the larger-scale dynamics of sedimentation and diagenesis, with particular emphasis on metal transport through reductive dissolution of Fe hydroxides. The model includes 1-D inorganic diffusive transport coupled to a biotic reaction network including consortium biodegradation kinetics with multiple terminal electron acceptors and syntrophic consortium biotransformation dynamics of redox front. The model captures the mobilization of metals initially sorbed onto hydrous ferric oxides, through bacterial reduction of Fe(III) near the top of the sediment column, coupled with the precipitation of metal sulfides at depth due to biogenic sulfide production. Key chemical reactions involve the dissolution of ferrihydrite and precipitation of siderite and Fe sulfide. The relative rates of these reactions play an important role in the evolution of the sediment pore-water chemistry, notably pH, and directly depend on the relative activity of Fe and SO 4 reducers. The model captures fairly well the observed trends of increased alkalinity, sulfide, Fe and heavy metal concentrations below the sediment-water interface, together with decreasing terminal electron acceptor concentrations with depth, including the

Numerical modeling of watershed-scale radiocesium transport coupled with biogeochemical cycling in forests

Science.gov (United States)

Mori, K.; Tada, K.; Tawara, Y.; Tosaka, H.; Ohno, K.; Asami, M.; Kosaka, K.

2015-12-01

Since the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident, intensive monitoring and modeling works on radionuclide transfer in environment have been carried out. Although Cesium (Cs) concentration has been attenuating due to both physical and environmental half-life (i.e., wash-off by water and sediment), the attenuation rate depends clearly on the type of land use and land cover. In the Fukushima case, studying the migration in forest land use is important for predicting the long-term behavior of Cs because most of the contaminated region is covered by forests. Atmospheric fallout is characterized by complicated behavior in biogeochemical cycle in forests which can be described by biotic/abiotic interactions between many components. In developing conceptual and mathematical model on Cs transfer in forest ecosystem, defining the dominant components and their interactions are crucial issues (BIOMASS, 1997-2001). However, the modeling of fate and transport in geosphere after Cs exports from the forest ecosystem is often ignored. An integrated watershed modeling for simulating spatiotemporal redistribution of Cs that includes the entire region from source to mouth and surface to subsurface, has been recently developed. Since the deposited Cs can migrate due to water and sediment movement, the different species (i.e., dissolved and suspended) and their interactions are key issues in the modeling. However, the initial inventory as source-term was simplified to be homogeneous and time-independent, and biogeochemical cycle in forests was not explicitly considered. Consequently, it was difficult to evaluate the regionally-inherent characteristics which differ according to land uses, even if the model was well calibrated. In this study, we combine the different advantages in modeling of forest ecosystem and watershed. This enable to include more realistic Cs deposition and time series of inventory can be forced over the land surface. These processes are integrated

Biogeochemical interactions between of coal mine water and gas well cement

Science.gov (United States)

Gulliver, D. M.; Gardiner, J. B.; Kutchko, B. G.; Hakala, A.; Spaulding, R.; Tkach, M. K.; Ross, D.

2017-12-01

Unconventional natural gas wells drilled in Northern Appalachia often pass through abandoned coal mines before reaching the Marcellus or Utica formations. Biogeochemical interactions between coal mine waters and gas well cements have the potential to alter the cement and compromise its sealing integrity. This study investigates the mineralogical, geochemical, and microbial changes of cement cores exposed to natural coal mine waters. Static reactors with Class H Portland cement cores and water samples from an abandoned bituminous Pittsburgh coal mine simulated the cement-fluid interactions at relevant temperature for time periods of 1, 2, 4, and 6 weeks. Fluids were analyzed for cation and anion concentrations and extracted DNA was analyzed by 16S rRNA gene sequencing and shotgun sequencing. Cement core material was evaluated via scanning electron microscope. Results suggest that the sampled coal mine water altered the permeability and matrix mineralogy of the cement cores. Scanning electron microscope images display an increase in mineral precipitates inside the cement matrix over the course of the experiment. Chemistry results from the reaction vessels' effluent waters display decreases in dissolved calcium, iron, silica, chloride, and sulfate. The microbial community decreased in diversity over the 6-week experiment, with Hydrogenophaga emerging as dominant. These results provide insight in the complex microbial-fluid-mineral interactions of these environments. This study begins to characterize the rarely documented biogeochemical impacts that coal waters may have on unconventional gas well integrity.

Relating hyporheic fluxes, residence times, and redox-sensitive biogeochemical processes upstream of beaver dams

Science.gov (United States)

Briggs, Martin A.; Lautz, Laura; Hare, Danielle K.

2013-01-01

Abstract. Small dams enhance the development of patchy microenvironments along stream corridors by trapping sediment and creating complex streambed morphologies. This patchiness drives intricate hyporheic flux patterns that govern the exchange of O2 and redox-sensitive solutes between the water column and the stream bed. We used multiple tracer techniques, naturally occurring and injected, to evaluate hyporheic flow dynamics and associated biogeochemical cycling and microbial reactivity around 2 beaver dams in Wyoming (USA). High-resolution fiber-optic distributed temperature sensing was used to collect temperature data over 9 vertical streambed profiles and to generate comprehensive vertical flux maps using 1-dimensional (1-D) heat-transport modeling. Coincident with these locations, vertical profiles of hyporheic water were collected every week and analyzed for dissolved O2, pH, dissolved organic C, and several conservative and redox-sensitive solutes. In addition, hyporheic and net stream aerobic microbial reactivity were analyzed with a constant-rate injection of the biologically sensitive resazurin (Raz) smart tracer. The combined results revealed a heterogeneous system with rates of downwelling hyporheic flow organized by morphologic unit and tightly coupled to the redox conditions of the subsurface. Principal component analysis was used to summarize the variability of all redox-sensitive species, and results indicated that hyporheic water varied from oxic-stream-like to anoxic-reduced in direct response to the hydrodynamic conditions and associated residence times. The anaerobic transition threshold predicted by the mean O2 Damko

Biogeochemical hotspots following a simulated tree mortality event of southern pine beetle

Science.gov (United States)

Siegert, C. M.; Renninger, H. J.; Karunarathna, S.; Hornslein, N.; Riggins, J. J.; Clay, N. A.; Tang, J. D.; Chaney, B.; Drotar, N.

2017-12-01

Disturbances in forest ecosystems can alter functions like productivity, respiration, and nutrient cycling through the creation of biogeochemical hotspots. These events occur sporadically across the landscape, leading to uncertainty in terrestrial biosphere carbon models, which have yet to capture the full complexity of biotic and abiotic factors driving ecological processes in the terrestrial environment. Given the widespread impact of southern pine beetle on forest ecosystems throughout the southeastern United States, it is critical to management and planning activities to understand the role of these disturbances. As such, we hypothesize that bark beetle killed trees create biogeochemical hotspots in the soils surrounding their trunk as they undergo mortality due to (1) increased soil moisture from reductions in plant water uptake and increased stemflow production, (2) enhanced canopy-derived inputs of carbon and nitrogen, and (3) increased microbial activity and root mortality. In 2015, a field experiment to mimic a southern pine beetle attack was established by girdling loblolly pine trees. Subsequent measurements of throughfall and stemflow for water quantity and quality, transpiration, stem respiration, soil respiration, and soil chemistry were used to quantify the extent of spatial and temporal impacts of tree mortality on carbon budgets. Compared to control trees, girdled trees exhibited reduced water uptake within the first 6 months of the study and succumbed to mortality within 18 months. Over two years, the girdled trees generated 33% more stemflow than control trees (7836 vs. 5882 L m-2). Preliminary analysis of carbon and nitrogen concentrations and dissolved organic matter quality are still pending. In the surrounding soils, C:N ratios were greater under control trees (12.8) than under girdled trees (12.1), which was driven by an increase in carbon around control trees (+0.13 mg C mg-1 soil) and not a decrease around girdled trees (-0.01 mg C mg-1

Hydrological and associated biogeochemical consequences of rapid global warming during the Paleocene-Eocene Thermal Maximum

Science.gov (United States)

Carmichael, Matthew J.; Inglis, Gordon N.; Badger, Marcus P. S.; Naafs, B. David A.; Behrooz, Leila; Remmelzwaal, Serginio; Monteiro, Fanny M.; Rohrssen, Megan; Farnsworth, Alexander; Buss, Heather L.; Dickson, Alexander J.; Valdes, Paul J.; Lunt, Daniel J.; Pancost, Richard D.

2017-10-01

The Paleocene-Eocene Thermal Maximum (PETM) hyperthermal, 56 million years ago (Ma), is the most dramatic example of abrupt Cenozoic global warming. During the PETM surface temperatures increased between 5 and 9 °C and the onset likely took hydrological and associated biogeochemical feedbacks, and proxy data from the PETM can provide constraints on changes in warm climate hydrology simulated by general circulation models (GCMs). In this paper, we provide a critical review of biological and geochemical signatures interpreted as direct or indirect indicators of hydrological change at the PETM, explore the importance of adopting multi-proxy approaches, and present a preliminary model-data comparison. Hydrological records complement those of temperature and indicate that the climatic response at the PETM was complex, with significant regional and temporal variability. This is further illustrated by the biogeochemical consequences of inferred changes in hydrology and, in fact, changes in precipitation and the biogeochemical consequences are often conflated in geochemical signatures. There is also strong evidence in many regions for changes in the episodic and/or intra-annual distribution of precipitation that has not widely been considered when comparing proxy data to GCM output. Crucially, GCM simulations indicate that the response of the hydrological cycle to the PETM was heterogeneous - some regions are associated with increased precipitation - evaporation (P - E), whilst others are characterised by a decrease. Interestingly, the majority of proxy data come from the regions where GCMs predict an increase in PETM precipitation. We propose that comparison of hydrological proxies to GCM output can be an important test of model skill, but this will be enhanced by further data from regions of model-simulated aridity and simulation of extreme precipitation events.

Pre- and post-industrial environmental changes as revealed by the biogeochemical sedimentary record of Drammensfjord, Norway

NARCIS (Netherlands)

Smittenberg, R.H.; Baas, M.; Green, M.J.; Hopmans, E.C.; Schouten, S.; Sinninghe Damsté, J.S.

2005-01-01

The biogeochemical sedimentary record of the anoxic Drammensfjord, Norway, was investigated on a decadal to centennial time scale over the last millennium, in order to reconstruct the pre-industrial fjord environment and ecosystem and humaninduced environmental changes. The sediments were dated by

Pre- and post-industrial environmental changes as revealed by the biogeochemical sedimentary record of Drammensfjord, Norway

NARCIS (Netherlands)

Sinninghe Damsté, J.S.; Smittenberg, R.H.; Baas, M.; Green, M.J.; Hopmans, E.C.; Schouten, S.

2005-01-01

The biogeochemical sedimentary record of the anoxic Drammensfjord, Norway, was investigated on a decadal to centennial time scale over the last millennium, in order to reconstruct the pre-industrial fjord environment and ecosystem and human-induced environmental changes. The sediments were dated by

Initial spread of {sup 137}Cs from the Fukushima Dai-ichi Nuclear Power Plant over the Japan continental shelf. A study using a high-resolution, global-coastal nested ocean model

Energy Technology Data Exchange (ETDEWEB)

Lai, Z. [Sun Yat-Sen Univ., Guangzhou (China). School of Marine Sciences; Univ. of Massachusetts-Dartmouth, New Bedford, MA (United States). School for Marine Science and Technology; Key Laboratory of Marine Resources and Coastal Engineering in Guangdong Province, Guangzhou (China); Chen, C.; Lin, H. [Univ. of Massachusetts-Dartmouth, New Bedford, MA (United States). School for Marine Science and Technology; Shanghai Ocean Univ. (China). International Center for Marine Studies; Beardsley, R. [Woods Hole Oceanographic Institution, Woods Hole, MA (United States). Dept. of Physical Oceanography; Ji, R. [Woods Hole Oceanographic Institution, Woods Hole, MA (United States). Dept. of Biology; Shanghai Ocean Univ. (China). International Center for Marine Studies; Sasaki, J. [The Univ. of Tokyo, Kashiwa (Japan). Dept. of Socio-Cultural Environmental Studies; Lin, J. [Woods Hole Oceanographic Institution, Woods Hole, MA (United States). Dept. of Geology and Geophysics

2013-07-01

The 11 March 2011 tsunami triggered by the M9 and M7.9 earthquakes off the Tohoku coast destroyed facilities at the Fukushima Dai-ichi Nuclear Power Plant (FNPP) leading to a significant long-term flow of the radionuclide {sup 137}Cs into coastal waters. A high-resolution, global-coastal nested ocean model was first constructed to simulate the 11 March tsunami and coastal inundation. Based on the model's success in reproducing the observed tsunami and coastal inundation, model experiments were then conducted with differing grid resolution to assess the initial spread of {sup 137}Cs over the eastern shelf of Japan. The {sup 137}Cs was tracked as a conservative tracer (without radioactive decay) in the three-dimensional model flow field over the period of 26 March-31 August 2011. The results clearly show that for the same {sup 137}Cs discharge, the model-predicted spreading of {sup 137}Cs was sensitive not only to model resolution but also the FNPP seawall structure. A coarse-resolution (∝2 km) model simulation led to an overestimation of lateral diffusion and thus faster dispersion of {sup 137}Cs from the coast to the deep ocean, while advective processes played a more significant role when the model resolution at and around the FNPP was refined to ∝5 m. By resolving the pathways from the leaking source to the southern and northern discharge canals, the high-resolution model better predicted the {sup 137}Cs spreading in the inner shelf where in situ measurements were made at 30 km off the coast. The overestimation of {sup 137}Cs concentration near the coast is thought to be due to the omission of sedimentation and biogeochemical processes as well as uncertainties in the amount of {sup 137}Cs leaking from the source in the model. As a result, a biogeochemical module should be included in the model for more realistic simulations of the fate and spreading of {sup 137}Cs in the ocean.

Andreae is New Editor of Global Biogeochemical Cycles

Science.gov (United States)

Andreae, Meinrat O.

2004-10-01

As the incoming editor of Global Biogeochemical Cycles, I would like to introduce myself and my ideas for the journal to Eos readers and to current and potential GBC authors. I've had a somewhat ``roaming'' scientific evolution, coming from ``straight'' chemistry through hard-rock geochemistry to chemical oceanography, the field in which I did my Ph.D. I taught marine chemistry at Florida State University for a number of years, and developed an interest in ocean/atmosphere interactions and atmospheric chemistry. In 1987 I took on my present job at the Max Planck Institute for Chemistry, in Mainz, Germany, and, after leaving the seacoast, my interests shifted to interactions between the terrestrial biosphere and atmosphere, including the role of vegetation fires. My present focus is on the role of biogenic aerosols and biomass smoke in regulating cloud properties and influencing climate.

Biogeochemical impact of a model western iron source in the Pacific Equatorial Undercurrent

OpenAIRE

Slemons, L.; Gorgues, T.; Aumont, Olivier; Menkès, Christophe; Murray, J. W.

2009-01-01

Trace element distributions in the source waters of the Pacific Equatorial Undercurrent (EUC) show the existence of elevated total acid-soluble iron concentrations. This region has been suggested to contribute enough bioavailable iron to regulate interannual and interglacial variability in biological productivity downstream in the high-nitrate low-chlorophyll upwelling zone of the eastern equatorial Pacific. We investigated the advection and first-order biogeochemical impact of an imposed, da...

Biogeochemical reactive transport of carbon, nitrogen and iron in the hyporheic zone

Science.gov (United States)

Dwivedi, D.; Steefel, C. I.; Newcomer, M. E.; Arora, B.; Spycher, N.; Hammond, G. E.; Moulton, J. D.; Fox, P. M.; Nico, P. S.; Williams, K. H.; Dafflon, B.; Carroll, R. W. H.

2017-12-01

To understand how biogeochemical processes in the hyporheic zone influence carbon and nitrogen cycling as well as stream biogeochemistry, we developed a biotic and abiotic reaction network and integrated it into a reactive transport simulator - PFLOTRAN. Three-dimensional reactive flow and transport simulations were performed to describe the hyporheic exchange of fluxes from and within an intra-meander region encompassing two meanders of East River in the East Taylor watershed, Colorado. The objectives of this study were to quantify (1) the effect of transience on the export of carbon, nitrogen, and iron; and (2) the biogeochemical transformation of nitrogen and carbon species as a function of the residence time. The model was able to capture reasonably well the observed trends of nitrate and dissolved oxygen values that decreased as well as iron (Fe (II)) values that increased along the meander centerline away from the stream. Hyporheic flow paths create lateral redox zonation within intra-meander regions, which considerably impact nitrogen export into the stream system. Simulation results further demonstrated that low water conditions lead to higher levels of dissolved iron in groundwater, which (Fe (II)> 80%) is exported to the stream on the downstream side during high water conditions. An important conclusion from this study is that reactive transport models representing spatial and temporal heterogeneities are required to identify important factors that contribute to the redox gradients at riverine scales.

Hyper-Resolution Groundwater Modeling using MODFLOW 6

Science.gov (United States)

Hughes, J. D.; Langevin, C.

2017-12-01

MODFLOW 6 is the latest version of the U.S. Geological Survey's modular hydrologic model. MODFLOW 6 was developed to synthesize many of the recent versions of MODFLOW into a single program, improve the way different process models are coupled, and to provide an object-oriented framework for adding new types of models and packages. The object-oriented framework and underlying numerical solver make it possible to tightly couple any number of hyper-resolution models within coarser regional models. The hyper-resolution models can be used to evaluate local-scale groundwater issues that may be affected by regional-scale forcings. In MODFLOW 6, hyper-resolution meshes can be maintained as separate model datasets, similar to MODFLOW-LGR, which simplifies the development of a coarse regional model with imbedded hyper-resolution models from a coarse regional model. For example, the South Atlantic Coastal Plain regional water availability model was converted from a MODFLOW-2000 model to a MODFLOW 6 model. The horizontal discretization of the original model is approximately 3,218 m x 3,218 m. Hyper-resolution models of the Aiken and Sumter County water budget areas in South Carolina with a horizontal discretization of approximately 322 m x 322 m were developed and were tightly coupled to a modified version of the original coarse regional model that excluded these areas. Hydraulic property and aquifer geometry data from the coarse model were mapped to the hyper-resolution models. The discretization of the hyper-resolution models is fine enough to make detailed analyses of the effect that changes in groundwater withdrawals in the production aquifers have on the water table and surface-water/groundwater interactions. The approach used in this analysis could be applied to other regional water availability models that have been developed by the U.S. Geological Survey to evaluate local scale groundwater issues.

Carbon sequestration by patch fertilization: A comprehensive assessment using coupled physical-ecological-biogeochemical models

Energy Technology Data Exchange (ETDEWEB)

Sarmiento, Jorge L. [Princeton Univ., NJ (United States); Gnanadesikan, Anand [Princeton Univ., NJ (United States); Gruber, Nicolas [Univ. of California, Los Angeles, CA (United States); Jin, Xin [Univ. of California, Los Angeles, CA (United States); Armstrong, Robert [State Univ. of New York (SUNY), Plattsburgh, NY (United States)

2007-06-21

This final report summarizes research undertaken collaboratively between Princeton University, the NOAA Geophysical Fluid Dynamics Laboratory on the Princeton University campus, the State University of New York at Stony Brook, and the University of California, Los Angeles between September 1, 2000, and November 30, 2006, to do fundamental research on ocean iron fertilization as a means to enhance the net oceanic uptake of CO2 from the atmosphere. The approach we proposed was to develop and apply a suite of coupled physical-ecological-biogeochemical models in order to (i) determine to what extent enhanced carbon fixation from iron fertilization will lead to an increase in the oceanic uptake of atmospheric CO2 and how long this carbon will remain sequestered (efficiency), and (ii) examine the changes in ocean ecology and natural biogeochemical cycles resulting from iron fertilization (consequences). The award was funded in two separate three-year installments: September 1, 2000 to November 30, 2003, for a project entitled “Ocean carbon sequestration by fertilization: An integrated biogeochemical assessment.” A final report was submitted for this at the end of 2003 and is included here as Appendix 1; and, December 1, 2003 to November 30, 2006, for a follow-on project under the same grant number entitled “Carbon sequestration by patch fertilization: A comprehensive assessment using coupled physical-ecological-biogeochemical models.” This report focuses primarily on the progress we made during the second period of funding subsequent to the work reported on in Appendix 1. When we began this project, we were thinking almost exclusively in terms of long-term fertilization over large regions of the ocean such as the Southern Ocean, with much of our focus being on how ocean circulation and biogeochemical cycling would interact to control the response to a given fertilization scenario. Our research on these types of scenarios, which was carried out largely during the

Effects of hydrologic conditions on biogeochemical processes and organic pollutant degradation in salt marsh sediments

Science.gov (United States)

W. James Catallo

2000-01-01

This work addressed the influence of tidal vs. static hydrologic conditions on biogeochemical processes and the transformation of pollutant organic chemicals (eight representative N-, O-, and S-heterocycles (NOSHs) from coal chemicals, crude oils, and pyrogenic mixtures) in salt marsh sediments. The goals were to: (1) determine the effects of static (flooded, drained)...

Effects of Stratospheric Ozone Depletion, Solar UV Radiation, and Climate Change on Biogeochemical Cycling: Interactions and Feedbacks

Science.gov (United States)

Climate change modulates the effects of solar UV radiation on biogeochemical cycles in terrestrial and aquatic ecosystems, particularly for carbon cycling, resulting in UV-mediated positive or negative feedbacks on climate. Possible positive feedbacks discussed in this assessment...

How important are intertidal ecosystems for global biogeochemical cycles? Molecular and isotopic evidence for major outwelling of photo-bleached dissolved organic matter from mangroves.

Science.gov (United States)

Dittmar, T.; Cooper, W. T.; Koch, B. P.; Kattner, G.

2006-05-01

Organic matter, which is dissolved in low concentrations in the vast waters of the oceans, contains a total amount of carbon similar to atmospheric carbon dioxide. To understand global biogeochemical cycles it is crucial to quantify the sources of marine dissolved organic carbon (DOC). We investigated the impact of mangroves, the dominant intertidal vegetation of the tropics, on marine DOC inventories. Stable carbon- isotopes, ultrahigh-resolution mass spectrometry (FTICRMS), lignin-derived phenols and proton nuclear magnetic resonance spectroscopy showed that mangroves are the main source of terrigenous DOC on the shelf off Northern Brazil. Sunlight efficiently destroyed aromatic molecules during transport offshore, removing about one third of mangrove-derived DOC. The remainder was refractory and may thus be distributed over the oceans. On a global scale, we estimate that mangroves account for more than 10 percent of the terrestrially- derived, refractory DOC transported to the ocean, while they cover less than 0.1 percent of the continents' surface.

High-resolution SMA imaging of bright submillimetre sources from the SCUBA-2 Cosmology Legacy Survey

Science.gov (United States)

Hill, Ryley; Chapman, Scott C.; Scott, Douglas; Petitpas, Glen; Smail, Ian; Chapin, Edward L.; Gurwell, Mark A.; Perry, Ryan; Blain, Andrew W.; Bremer, Malcolm N.; Chen, Chian-Chou; Dunlop, James S.; Farrah, Duncan; Fazio, Giovanni G.; Geach, James E.; Howson, Paul; Ivison, R. J.; Lacaille, Kevin; Michałowski, Michał J.; Simpson, James M.; Swinbank, A. M.; van der Werf, Paul P.; Wilner, David J.

2018-06-01

We have used the Submillimeter Array (SMA) at 860 μm to observe the brightest sources in the Submillimeter Common User Bolometer Array-2 (SCUBA-2) Cosmology Legacy Survey (S2CLS). The goal of this survey is to exploit the large field of the S2CLS along with the resolution and sensitivity of the SMA to construct a large sample of these rare sources and to study their statistical properties. We have targeted 70 of the brightest single-dish SCUBA-2 850 μm sources down to S850 ≈ 8 mJy, achieving an average synthesized beam of 2.4 arcsec and an average rms of σ860 = 1.5 mJy beam-1 in our primary beam-corrected maps. We searched our SMA maps for 4σ peaks, corresponding to S860 ≳ 6 mJy sources, and detected 62, galaxies, including three pairs. We include in our study 35 archival observations, bringing our sample size to 105 bright single-dish submillimetre sources with interferometric follow-up. We compute the cumulative and differential number counts, finding them to overlap with previous single-dish survey number counts within the uncertainties, although our cumulative number count is systematically lower than the parent S2CLS cumulative number count by 14 ± 6 per cent between 11 and 15 mJy. We estimate the probability that a ≳10 mJy single-dish submillimetre source resolves into two or more galaxies with similar flux densities to be less than 15 per cent. Assuming the remaining 85 per cent of the targets are ultraluminous starburst galaxies between z = 2 and 3, we find a likely volume density of ≳400 M⊙ yr-1 sources to be {˜ } 3^{+0.7}_{-0.6} {× } 10^{-7} Mpc-3. We show that the descendants of these galaxies could be ≳4 × 1011 M⊙ local quiescent galaxies, and that about 10 per cent of their total stellar mass would have formed during these short bursts of star formation.

HYDROBIOGEOCHEM: A coupled model of HYDROlogic transport and mixed BIOGEOCHEMical kinetic/equilibrium reactions in saturated-unsaturated media

Energy Technology Data Exchange (ETDEWEB)

Yeh, G.T.; Salvage, K.M. [Pennsylvania State Univ., University Park, PA (United States). Dept. of Civil and Environmental Engineering; Gwo, J.P. [Oak Ridge National Lab., TN (United States); Zachara, J.M.; Szecsody, J.E. [Pacific Northwest National Lab., Richland, WA (United States)

1998-07-01

The computer program HYDROBIOGEOCHEM is a coupled model of HYDROlogic transport and BIOGEOCHEMical kinetic and/or equilibrium reactions in saturated/unsaturated media. HYDROBIOGEOCHEM iteratively solves the two-dimensional transport equations and the ordinary differential and algebraic equations of mixed biogeochemical reactions. The transport equations are solved for all aqueous chemical components and kinetically controlled aqueous species. HYDROBIOGEOCHEM is designed for generic application to reactive transport problems affected by both microbiological and geochemical reactions in subsurface media. Input to the program includes the geometry of the system, the spatial distribution of finite elements and nodes, the properties of the media, the potential chemical and microbial reactions, and the initial and boundary conditions. Output includes the spatial distribution of chemical and microbial concentrations as a function of time and space, and the chemical speciation at user-specified nodes.

Initial spread of "1"3"7Cs from the Fukushima Dai-ichi Nuclear Power Plant over the Japan continental shelf. A study using a high-resolution, global-coastal nested ocean model

International Nuclear Information System (INIS)

Lai, Z.; Chen, C.; Lin, H.; Shanghai Ocean Univ.; Beardsley, R.; Ji, R.; Shanghai Ocean Univ.; Sasaki, J.; Lin, J.

2013-01-01

The 11 March 2011 tsunami triggered by the M9 and M7.9 earthquakes off the Tohoku coast destroyed facilities at the Fukushima Dai-ichi Nuclear Power Plant (FNPP) leading to a significant long-term flow of the radionuclide "1"3"7Cs into coastal waters. A high-resolution, global-coastal nested ocean model was first constructed to simulate the 11 March tsunami and coastal inundation. Based on the model's success in reproducing the observed tsunami and coastal inundation, model experiments were then conducted with differing grid resolution to assess the initial spread of "1"3"7Cs over the eastern shelf of Japan. The "1"3"7Cs was tracked as a conservative tracer (without radioactive decay) in the three-dimensional model flow field over the period of 26 March-31 August 2011. The results clearly show that for the same "1"3"7Cs discharge, the model-predicted spreading of "1"3"7Cs was sensitive not only to model resolution but also the FNPP seawall structure. A coarse-resolution (∝2 km) model simulation led to an overestimation of lateral diffusion and thus faster dispersion of "1"3"7Cs from the coast to the deep ocean, while advective processes played a more significant role when the model resolution at and around the FNPP was refined to ∝5 m. By resolving the pathways from the leaking source to the southern and northern discharge canals, the high-resolution model better predicted the "1"3"7Cs spreading in the inner shelf where in situ measurements were made at 30 km off the coast. The overestimation of "1"3"7Cs concentration near the coast is thought to be due to the omission of sedimentation and biogeochemical processes as well as uncertainties in the amount of "1"3"7Cs leaking from the source in the model. As a result, a biogeochemical module should be included in the model for more realistic simulations of the fate and spreading of "1"3"7Cs in the ocean.

Assessment of the GHG Reduction Potential from Energy Crops Using a Combined LCA and Biogeochemical Process Models: A Review

Directory of Open Access Journals (Sweden)

Dong Jiang

2014-01-01

Full Text Available The main purpose for developing biofuel is to reduce GHG (greenhouse gas emissions, but the comprehensive environmental impact of such fuels is not clear. Life cycle analysis (LCA, as a complete comprehensive analysis method, has been widely used in bioenergy assessment studies. Great efforts have been directed toward establishing an efficient method for comprehensively estimating the greenhouse gas (GHG emission reduction potential from the large-scale cultivation of energy plants by combining LCA with ecosystem/biogeochemical process models. LCA presents a general framework for evaluating the energy consumption and GHG emission from energy crop planting, yield acquisition, production, product use, and postprocessing. Meanwhile, ecosystem/biogeochemical process models are adopted to simulate the fluxes and storage of energy, water, carbon, and nitrogen in the soil-plant (energy crops soil continuum. Although clear progress has been made in recent years, some problems still exist in current studies and should be addressed. This paper reviews the state-of-the-art method for estimating GHG emission reduction through developing energy crops and introduces in detail a new approach for assessing GHG emission reduction by combining LCA with biogeochemical process models. The main achievements of this study along with the problems in current studies are described and discussed.

Can neap-spring tidal cycles modulate biogeochemical fluxes in the abyssal near-seafloor water column?

Science.gov (United States)

Turnewitsch, Robert; Dale, Andrew; Lahajnar, Niko; Lampitt, Richard S.; Sakamoto, Kei

2017-05-01

Before particulate matter that settles as 'primary flux' from the interior ocean is deposited into deep-sea sediments it has to traverse the benthic boundary layer (BBL) that is likely to cover almost all parts of the seafloor in the deep seas. Fluid dynamics in the BBL differ vastly from fluid dynamics in the overlying water column and, consequently, have the potential to lead to quantitative and compositional changes between primary and depositional fluxes. Despite this potential and the likely global relevance very little is known about mechanistic and quantitative aspects of the controlling processes. Here, results are presented for a sediment-trap time-series study that was conducted on the Porcupine Abyssal Plain in the abyssal Northeast Atlantic, with traps deployed at 2, 40 and 569 m above bottom (mab). The two bottommost traps were situated within the BBL-affected part of the water column. The time series captured 3 neap and 4 spring tides and the arrival of fresh settling material originating from a surface-ocean bloom. In the trap-collected material, total particulate matter (TPM), particulate inorganic carbon (PIC), biogenic silica (BSi), particulate organic carbon (POC), particulate nitrogen (PN), total hydrolysable amino acids (AA), hexosamines (HA) and lithogenic material (LM) were determined. The biogeochemical results are presented within the context of time series of measured currents (at 15 mab) and turbidity (at 1 mab). The main outcome is evidence for an effect of neap/spring tidal oscillations on particulate-matter dynamics in BBL-affected waters in the deep sea. Based on the frequency-decomposed current measurements and numerical modelling of BBL fluid dynamics, it is concluded that the neap/spring tidal oscillations of particulate-matter dynamics are less likely due to temporally varying total free-stream current speeds and more likely due to temporally and vertically varying turbulence intensities that result from the temporally varying

Characterization and consequences of intermittent sediment oxygenation by macrofauna: interpretation of high-resolution data sets

Science.gov (United States)

Meile, C. D.; Dwyer, I.; Zhu, Q.; Polerecky, L.; Volkenborn, N.

2017-12-01

Mineralization of organic matter in marine sediments leads to the depletion of oxygen, while activities of infauna introduce oxygenated seawater to the subsurface. In permeable sediments solutes can be transported from animals and their burrows into the surrounding sediment through advection over several centimeters. The intermittency of pumping leads to a spatially heterogeneous distribution of oxidants, with the temporal dynamics depending on sediment reactivity and activity patterns of the macrofauna. Here, we present results from a series of experiments in which these dynamics are studied at high spatial and temporal resolution using planar optodes. From O2, pH and pCO2 optode data, we quantify rates of O2 consumption and dissolved inorganic carbon production, as well alkalinity dynamics, with millimeter-scale resolution. Simulating intermittent irrigation by imposed pumping patterns in thin aquaria, we derive porewater flow patterns, which together with the production and consumption rates cause the chemical distributions and the establishment of reaction fronts. Our analysis thus establishes a quantitative connection between the locally dynamic redox conditions relevant for biogeochemical transformations and macroscopic observations commonly made with sediment cores.

Biogeochemical linkage between atmosphere and ocean in the eastern equatorial Pacific Ocean: Results from the EqPOS research cruise

Science.gov (United States)

Furutani, H.; Inai, Y.; Aoki, S.; Honda, H.; Omori, Y.; Tanimoto, H.; Iwata, T.; Ueda, S.; Miura, K.; Uematsu, M.

2012-12-01

Eastern equatorial Pacific Ocean is a unique oceanic region from several biogeochemical points of view. It is a remote open ocean with relatively high marine biological activity, which would result in limited influence of human activity but enhanced effect of marine natural processes on atmospheric composition. It is also characterized as high nutrient low chlorophyll (HNLC) ocean, in which availability of trace metals such as iron and zinc limits marine primary production and thus atmospheric deposition of these trace elements to the ocean surface is expected to play an important role in regulating marine primary production and defining unique microbial community. High sea surface temperature in the region generates strong vertical air convection which efficiently brings tropospheric atmospheric composition into stratosphere. In this unique eastern equatorial Pacific Ocean, EqPOS (Equatorial Pacific Ocean and Stratospheric/Tropospheric Atmospheric Study) research cruise was organized as a part of SOLAS Japan activity to understand biogeochemical ocean-atmospheric interaction in the region. Coordinated atmospheric, oceanic, and marine biological observations including sampling/characterization of thin air-sea interfacial layer (sea surface microlayer: SML) and launching large stratospheric air sampling balloons were carried out on-board R/V Hakuho Maru starting from 29 January for 39 days. Biogeochemically important trace/long-lived gases such as CO2, dimethyl sulfide (DMS), and some volatile organic carbons (VOCs) both in the atmosphere and seawater were continuously monitored and their air-sea fluxes were also observed using gradient and eddy-covariance techniques. Atmospheric gas measurement of CO2, CH4, N2O, SF6, CO, H2, Ar and isotopic composition of selected gases were further extended to stratospheric air by balloon-born sampling in addition to a vertical profiling of O3, CO2, and H2O with sounding sondes. Physical and chemical properties of marine

IIASA's climate-vegetation-biogeochemical cycle module as a part of an integrated model for climate change

International Nuclear Information System (INIS)

Ganopolski, A.V.; Jonas, M.; Krabec, J.; Olendrzynski, K.; Petoukhov, V.K.; Venevsky, S.V.

1994-01-01

The main objective of this study is the development of a hierarchy of coupled climate biosphere models with a full description of the global biogeochemical cycles. These models are planned for use as the core of a set of integrated models of climate change and they will incorporate the main elements of the Earth system (atmosphere, hydrosphere, pedosphere and biosphere) linked with each other (and eventually with the antroposphere) through the fluxes of heat, momentum, water and through the global biogeochemical cycles of carbon and nitrogen. This set of integrated models can be considered to fill the gap between highly simplified integrated models of climate change and very sophisticated and computationally expensive coupled models, developed on the basis of general circulation models (GCMs). It is anticipated that this range of integrated models will be an effective tool for investigating the broad spectrum of problems connected with the coexistence of human society and biosphere

Implementation ambiguity: The fifth element long lost in uncertainty budgets for land biogeochemical modeling

Science.gov (United States)

Tang, J.; Riley, W. J.

2015-12-01

Previous studies have identified four major sources of predictive uncertainty in modeling land biogeochemical (BGC) processes: (1) imperfect initial conditions (e.g., assumption of preindustrial equilibrium); (2) imperfect boundary conditions (e.g., climate forcing data); (3) parameterization (type I equifinality); and (4) model structure (type II equifinality). As if that were not enough to cause substantial sleep loss in modelers, we propose here a fifth element of uncertainty that results from implementation ambiguity that occurs when the model's mathematical description is translated into computational code. We demonstrate the implementation ambiguity using the example of nitrogen down regulation, a necessary process in modeling carbon-climate feedbacks. We show that, depending on common land BGC model interpretations of the governing equations for mineral nitrogen, there are three different implementations of nitrogen down regulation. We coded these three implementations in the ACME land model (ALM), and explored how they lead to different preindustrial and contemporary land biogeochemical states and fluxes. We also show how this implementation ambiguity can lead to different carbon-climate feedback estimates across the RCP scenarios. We conclude by suggesting how to avoid such implementation ambiguity in ESM BGC models.

Biogeochemical and Ecomorphological Niche Segregation of Mediterranean Woody Species along a Local Gradient

OpenAIRE

Enrique G. de la Riva; Enrique G. de la Riva; Teodoro Marañón; Cyrille Violle; Rafael Villar; Ignacio M. Pérez-Ramos

2017-01-01

According with niche theory the species are specialized in different ecological niches, being able to coexist as result of a differential use of resources. In this context, the biogeochemical niche hypothesis proposes that species have an optimal elemental composition which results from the link between the chemical and morphological traits for the optimum plant functioning. Thus, and attending to the limiting similarity concept, different elemental composition and plant structure among co-oc...

Identifying biogeochemical processes beneath stormwater infiltration ponds in support of a new best management practice for groundwater protection

Science.gov (United States)

O'Reilly, Andrew M.; Chang, Ni-Bin; Wanielista, Martin P.; Xuan, Zhemin; Schirmer, Mario; Hoehn, Eduard; Vogt, Tobias

2011-01-01

 When applying a stormwater infiltration pond best management practice (BMP) for protecting the quality of underlying groundwater, a common constituent of concern is nitrate. Two stormwater infiltration ponds, the SO and HT ponds, in central Florida, USA, were monitored. A temporal succession of biogeochemical processes was identified beneath the SO pond, including oxygen reduction, denitrification, manganese and iron reduction, and methanogenesis. In contrast, aerobic conditions persisted beneath the HT pond, resulting in nitrate leaching into groundwater. Biogeochemical differences likely are related to soil textural and hydraulic properties that control surface/subsurface oxygen exchange. A new infiltration BMP was developed and a full-scale application was implemented for the HT pond. Preliminary results indicate reductions in nitrate concentration exceeding 50% in soil water and shallow groundwater beneath the HT pond.

Pushing the limits of spatial resolution with the Kuiper Airborne observatory

Science.gov (United States)

Lester, Daniel

1994-01-01

The study of astronomical objects at high spatial resolution in the far-IR is one of the most serious limitations to our work at these wavelengths, which carry information about the luminosity of dusty and obscured sources. At IR wavelengths shorter than 30 microns, ground based telescopes with large apertures at superb sites achieve diffraction-limited performance close to the seeing limit in the optical. At millimeter wavelengths, ground based interferometers achieve resolution that is close to this. The inaccessibility of the far-IR from the ground makes it difficult, however, to achieve complementary resolution in the far-IR. The 1983 IRAS survey, while extraordinarily sensitive, provides us with a sky map at a spatial resolution that is limited by detector size on a spatial scale that is far larger than that available in other wavelengths on the ground. The survey resolution is of order 4 min in the 100 micron bandpass, and 2 min at 60 microns (IRAS Explanatory Supplement, 1988). Information on a scale of 1' is available on some sources from the CPC. Deconvolution and image resolution using this database is one of the subjects of this workshop.

The Herschel-SPIRE Legacy Survey (HSLS): the scientific goals of a shallow and wide submillimeter imaging survey with SPIRE

NARCIS (Netherlands)

Cooray, Asantha; Eales, Steve; Chapman, Scott; Clements, David L.; Dore, Olivier; Farrah, Duncan; Jarvis, Matt J.; Kaplinghat, Manoj; Negrello, Mattia; Melchiorri, Alessandro; Peiris, Hiranya; Pope, Alexandra; Santos, Mario G.; Serjeant, Stephen; Thompson, Mark; White, Glenn; Amblard, Alexandre; Banerji, Manda; Corasaniti, Pier-Stefano; Das, Sudeep; de Bernardis, Francesco; de Zotti, Gianfranco; Giannantonio, Tommaso; Gonzalez-Nuevo Gonzalez, Joaquin; Khostovan, Ali Ahmad; Mitchell-Wynne, Ketron; Serra, Paolo; Song, Yong-Seon; Vieira, Joaquin; Wang, Lingyu; Zemcov, Michael; Abdalla, Filipe; Afonso, Jose; Aghanim, Nabila; Andreani, Paola; Aretxaga, Itziar; Auld, Robbie; Baes, Maarten; Baker, Andrew; Barkats, Denis; Belen Barreiro, R.; Bartolo, Nicola; Barton, Elizabeth; Barway, Sudhanshu; Stefano Battistelli, Elia; Baugh, Carlton; Holwerda, Benne W.; Koopmans, Leon; Pohlen, Michael; Vegetti, Simona

2010-01-01

A large sub-mm survey with Herschel will enable many exciting science opportunities, especially in an era of wide-field optical and radio surveys and high resolution cosmic microwave background experiments. The Herschel-SPIRE Legacy Survey (HSLS), will lead to imaging data over 4000 sq. degrees at

High-Resolution Multibeam Sonar Survey and Interactive 3-D Exploration of the D-Day Wrecks off Normandy

Science.gov (United States)

Mayer, L. A.; Calder, B.; Schmidt, J. S.

2003-12-01

Historically, archaeological investigations use sidescan sonar and marine magnetometers as initial search tools. Targets are then examined through direct observation by divers, video, or photographs. Magnetometers can demonstrate the presence, absence, and relative susceptibility of ferrous objects but provide little indication of the nature of the target. Sidescan sonar can present a clear image of the overall nature of a target and its surrounding environment, but the sidescan image is often distorted and contains little information about the true 3-D shape of the object. Optical techniques allow precise identification of objects but suffer from very limited range, even in the best of situations. Modern high-resolution multibeam sonar offers an opportunity to cover a relatively large area from a safe distance above the target, while resolving the true three-dimensional (3-D) shape of the object with centimeter-level resolution. The combination of 3-D mapping and interactive 3-D visualization techniques provides a powerful new means to explore underwater artifacts. A clear demonstration of the applicability of high-resolution multibeam sonar to wreck and artifact investigations occurred when the Naval Historical Center (NHC), the Center for Coastal and Ocean Mapping (CCOM) at the University of New Hampshire, and Reson Inc., collaborated to explore the state of preservation and impact on the surrounding environment of a series of wrecks located off the coast of Normandy, France, adjacent to the American landing sectors The survey augmented previously collected magnetometer and high-resolution sidescan sonar data using a Reson 8125 high-resolution focused multibeam sonar with 240, 0.5° (at nadir) beams distributed over a 120° swath. The team investigated 21 areas in water depths ranging from about three -to 30 meters (m); some areas contained individual targets such as landing craft, barges, a destroyer, troop carrier, etc., while others contained multiple smaller

Effects of increased solar ultraviolet radiation on biogeochemical cycles

International Nuclear Information System (INIS)

Zepp, R.G.; Callaghan, T.V.; Erickson, D.J.

1995-01-01

Increases in solar UV radiation could affect terrestrial and aquatic biogeochemical cycles thus altering both sources and sinks of greenhouse and chemically important trace gases (e.g., carbon dioxide (CO2), carbon monoxide (CO), carbonyl sulfide (COS). In terrestrial ecosystems, increased UV-B could modify both the production and decomposition of plant matter with concomitant changes in the uptake and release of atmospherically important trace gases. Decomposition processes can be accelerated when UV-B photodegrades surface litter, or retarded when the dominant effect involves changes in the chemical composition of living tissues that reduce the biodegradability of buried litter. These changes in decomposition can affect microbial production of CO2 and other trace gases and also may affect the availability of nutrients essential for plant growth. Primary production can be reduced by enhanced UV-B, but the effect is variable between species and even cultivars of some crops. Likewise, the effects of enhanced UV-B on photoproduction of CO from plant matter is species-dependent and occurs more efficiently from dead than from living matter. Aquatic ecosystems studies in several different locations have shown that reductions in current levels of solar UV-B result in enhanced primary production, and Antarctic experiments under the ozone hole demonstrated that primary production is inhibited by enhanced UV-B. In addition to its effects on primary production, solar UV radiation can reduce bacterioplankton growth in the upper ocean with potentially important effects on marine biogeochemical cycles. Decomposition processes can be retarded when bacterial activity is suppressed by enhanced UV-B radiation or stimulated when solar UV radiation photodegrades aquatic dissolved organic matter. Photodegradation of DOM results in loss of UV absorption and formation of dissolved inorganic carbon, CO, and organic substrates that are readily mineralized or taken up by aquatic

Contrasting seasonality in optical-biogeochemical properties of the Baltic Sea.

Science.gov (United States)

Simis, Stefan G H; Ylöstalo, Pasi; Kallio, Kari Y; Spilling, Kristian; Kutser, Tiit

2017-01-01

Optical-biogeochemical relationships of particulate and dissolved organic matter are presented in support of remote sensing of the Baltic Sea pelagic. This system exhibits strong seasonality in phytoplankton community composition and wide gradients of chromophoric dissolved organic matter (CDOM), properties which are poorly handled by existing remote sensing algorithms. Absorption and scattering properties of particulate matter reflected the seasonality in biological (phytoplankton succession) and physical (thermal stratification) processes. Inherent optical properties showed much wider variability when normalized to the chlorophyll-a concentration compared to normalization to either total suspended matter dry weight or particulate organic carbon. The particle population had the largest optical variability in summer and was dominated by organic matter in both seasons. The geographic variability of CDOM and relationships with dissolved organic carbon (DOC) are also presented. CDOM dominated light absorption at blue wavelengths, contributing 81% (median) of the absorption by all water constituents at 400 nm and 63% at 442 nm. Consequentially, 90% of water-leaving radiance at 412 nm originated from a layer (z90) no deeper than approximately 1.0 m. With water increasingly attenuating light at longer wavelengths, a green peak in light penetration and reflectance is always present in these waters, with z90 up to 3.0-3.5 m depth, whereas z90 only exceeds 5 m at biomass < 5 mg Chla m-3. High absorption combined with a weakly scattering particle population (despite median phytoplankton biomass of 14.1 and 4.3 mg Chla m-3 in spring and summer samples, respectively), characterize this sea as a dark water body for which dedicated or exceptionally robust remote sensing techniques are required. Seasonal and regional optical-biogeochemical models, data distributions, and an extensive set of simulated remote-sensing reflectance spectra for testing of remote sensing algorithms are

Contrasting seasonality in optical-biogeochemical properties of the Baltic Sea.

Directory of Open Access Journals (Sweden)

Stefan G H Simis

Full Text Available Optical-biogeochemical relationships of particulate and dissolved organic matter are presented in support of remote sensing of the Baltic Sea pelagic. This system exhibits strong seasonality in phytoplankton community composition and wide gradients of chromophoric dissolved organic matter (CDOM, properties which are poorly handled by existing remote sensing algorithms. Absorption and scattering properties of particulate matter reflected the seasonality in biological (phytoplankton succession and physical (thermal stratification processes. Inherent optical properties showed much wider variability when normalized to the chlorophyll-a concentration compared to normalization to either total suspended matter dry weight or particulate organic carbon. The particle population had the largest optical variability in summer and was dominated by organic matter in both seasons. The geographic variability of CDOM and relationships with dissolved organic carbon (DOC are also presented. CDOM dominated light absorption at blue wavelengths, contributing 81% (median of the absorption by all water constituents at 400 nm and 63% at 442 nm. Consequentially, 90% of water-leaving radiance at 412 nm originated from a layer (z90 no deeper than approximately 1.0 m. With water increasingly attenuating light at longer wavelengths, a green peak in light penetration and reflectance is always present in these waters, with z90 up to 3.0-3.5 m depth, whereas z90 only exceeds 5 m at biomass < 5 mg Chla m-3. High absorption combined with a weakly scattering particle population (despite median phytoplankton biomass of 14.1 and 4.3 mg Chla m-3 in spring and summer samples, respectively, characterize this sea as a dark water body for which dedicated or exceptionally robust remote sensing techniques are required. Seasonal and regional optical-biogeochemical models, data distributions, and an extensive set of simulated remote-sensing reflectance spectra for testing of remote sensing

Contrasting seasonality in optical-biogeochemical properties of the Baltic Sea

Science.gov (United States)

Ylöstalo, Pasi; Kallio, Kari Y.; Spilling, Kristian; Kutser, Tiit

2017-01-01

Optical-biogeochemical relationships of particulate and dissolved organic matter are presented in support of remote sensing of the Baltic Sea pelagic. This system exhibits strong seasonality in phytoplankton community composition and wide gradients of chromophoric dissolved organic matter (CDOM), properties which are poorly handled by existing remote sensing algorithms. Absorption and scattering properties of particulate matter reflected the seasonality in biological (phytoplankton succession) and physical (thermal stratification) processes. Inherent optical properties showed much wider variability when normalized to the chlorophyll-a concentration compared to normalization to either total suspended matter dry weight or particulate organic carbon. The particle population had the largest optical variability in summer and was dominated by organic matter in both seasons. The geographic variability of CDOM and relationships with dissolved organic carbon (DOC) are also presented. CDOM dominated light absorption at blue wavelengths, contributing 81% (median) of the absorption by all water constituents at 400 nm and 63% at 442 nm. Consequentially, 90% of water-leaving radiance at 412 nm originated from a layer (z90) no deeper than approximately 1.0 m. With water increasingly attenuating light at longer wavelengths, a green peak in light penetration and reflectance is always present in these waters, with z90 up to 3.0–3.5 m depth, whereas z90 only exceeds 5 m at biomass < 5 mg Chla m-3. High absorption combined with a weakly scattering particle population (despite median phytoplankton biomass of 14.1 and 4.3 mg Chla m-3 in spring and summer samples, respectively), characterize this sea as a dark water body for which dedicated or exceptionally robust remote sensing techniques are required. Seasonal and regional optical-biogeochemical models, data distributions, and an extensive set of simulated remote-sensing reflectance spectra for testing of remote sensing algorithms

Combined effects of hydrologic alteration and cyprinid fish in mediating biogeochemical processes in a Mediterranean stream.

Science.gov (United States)

Rubio-Gracia, Francesc; Almeida, David; Bonet, Berta; Casals, Frederic; Espinosa, Carmen; Flecker, Alexander S; García-Berthou, Emili; Martí, Eugènia; Tuulaikhuu, Baigal-Amar; Vila-Gispert, Anna; Zamora, Lluis; Guasch, Helena

2017-12-01

Flow regimes are important drivers of both stream community and biogeochemical processes. However, the interplay between community and biogeochemical responses under different flow regimes in streams is less understood. In this study, we investigated the structural and functional responses of periphyton and macroinvertebrates to different densities of the Mediterranean barbel (Barbus meridionalis, Cyprinidae) in two stream reaches differing in flow regime. The study was conducted in Llémena Stream, a small calcareous Mediterranean stream with high nutrient levels. We selected a reach with permanent flow (permanent reach) and another subjected to flow regulation (regulated reach) with periods of flow intermittency. At each reach, we used in situ cages to generate 3 levels of fish density. Cages with 10 barbels were used to simulate high fish density (>7indm -2 ); cages with open sides were used as controls (i.e. exposed to actual fish densities of each stream reach) thus having low fish density; and those with no fish were used to simulate the disappearance of fish that occurs with stream drying. Differences in fish density did not cause significant changes in periphyton biomass and macroinvertebrate density. However, phosphate uptake by periphyton was enhanced in treatments lacking fish in the regulated reach with intermittent flow but not in the permanent reach, suggesting that hydrologic alteration hampers the ability of biotic communities to compensate for the absence of fish. This study indicates that fish density can mediate the effects of anthropogenic alterations such as flow intermittence derived from hydrologic regulation on stream benthic communities and associated biogeochemical processes, at least in eutrophic streams. Copyright © 2017. Published by Elsevier B.V.

Dynamic biogeochemical provinces in the global ocean

Science.gov (United States)

Reygondeau, Gabriel; Longhurst, Alan; Martinez, Elodie; Beaugrand, Gregory; Antoine, David; Maury, Olivier

2013-12-01

In recent decades, it has been found useful to partition the pelagic environment using the concept of biogeochemical provinces, or BGCPs, within each of which it is assumed that environmental conditions are distinguishable and unique at global scale. The boundaries between provinces respond to features of physical oceanography and, ideally, should follow seasonal and interannual changes in ocean dynamics. But this ideal has not been fulfilled except for small regions of the oceans. Moreover, BGCPs have been used only as static entities having boundaries that were originally established to compute global primary production. In the present study, a new statistical methodology based on non-parametric procedures is implemented to capture the environmental characteristics within 56 BGCPs. Four main environmental parameters (bathymetry, chlorophyll a concentration, surface temperature, and salinity) are used to infer the spatial distribution of each BGCP over 1997-2007. The resulting dynamic partition allows us to integrate changes in the distribution of BGCPs at seasonal and interannual timescales, and so introduces the possibility of detecting spatial shifts in environmental conditions.

Atmospheric deposition impacts on nutrients and biological budgets of the Mediterranean Sea, results from the high resolution coupled model NEMOMED12/PISCES

Science.gov (United States)

Richon, Camille; Dutay, Jean-Claude; Dulac, François; Desboeufs, Karine; Nabat, Pierre; Guieu, Cécile; Aumont, Olivier; Palmieri, Julien

2016-04-01

Atmospheric deposition is at present not included in regional oceanic biogeochemical models of the Mediterranean Sea, whereas, along with river inputs, it represents a significant source of nutrients at the basin scale, especially through intense desert dust events. Moreover, observations (e.g. DUNE campaign, Guieu et al. 2010) show that these events significantly modify the biogeochemistry of the oligotrophic Mediterranean Sea. We use a high resolution (1/12°) version of the 3D coupled model NEMOMED12/PISCES to investigate the effects of high resolution atmospheric dust deposition forcings on the biogeochemistry of the Mediterranean basin. The biogeochemical model PISCES represents the evolution of 24 prognostic tracers including five nutrients (nitrate, ammonium, phosphate, silicate and iron) and two phytoplankton and zooplanktons groups (Palmiéri, 2014). From decadal simulations (1982-2012) we evaluate the influence of natural dust and anthropogenic nitrogen deposition on the budget of nutrients in the basin and its impact on the biogeochemistry (primary production, plankton distributions...). Our results show that natural dust deposition accounts for 15% of global PO4 budget and that it influences primarily the southern part of the basin. Anthropogenic nitrogen accounts for 50% of bioavailable N supply for the northern part. Deposition events significantly affect biological production; primary productivity enhancement can be as high as 30% in the areas of high deposition, especially during the stratified period. Further developments of the model will include 0D and 1D modeling of bacteria in the frame of the PEACETIME project.

Numerical modeling to assess the sensitivity and resolution of long-electrode electrical resistance tomography (LEERT) surveys to monitor CO₂ migration, Phase 1B area

Energy Technology Data Exchange (ETDEWEB)

Ramirez, Abelardo L. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2010-05-18

This document describes the results of a numerical modeling study that evaluated whether LEERT could be used successfully to monitor CO₂ distribution in the Weyburn- Midale reservoir, Phase 1B area. The magnitude of electrical resistivity changes and the technique’s resolution depend on many site-specific factors including well separation distances, casing lengths, reservoir depth, thickness, and composition, and the effect of CO₂ on the electrical properties of the reservoir. Phase 1B-specific numerical modeling of the electrical response to CO₂ injection has been performed to assess sensitivity and resolution of the electrical surveys.

Structure of peat soils and implications for biogeochemical processes and hydrological flow

Science.gov (United States)

Rezanezhad, F.; McCarter, C. P. R.; Gharedaghloo, B.; Kleimeier, C.; Milojevic, T.; Liu, H.; Weber, T. K. D.; Price, J. S.; Quinton, W. L.; Lenartz, B.; Van Cappellen, P.

2017-12-01

Permafrost peatlands contain globally important amounts of soil organic carbon and play major roles in global water, nutrient and biogeochemical cycles. The structure of peatland soils (i.e., peat) are highly complex with unique physical and hydraulic properties; where significant, and only partially reversible, shrinkage occurs during dewatering (including water table fluctuations), compression and/or decomposition. These distinct physical and hydraulic properties controls water flow, which in turn affect reactive and non-reactive solute transport (such as, sorption or degradation) and biogeochemical functions. Additionally, peat further attenuates solute migration through molecular diffusion into the inactive pores of Sphagnum dominated peat. These slow, diffusion-limited solute exchanges between the pore regions may give rise to pore-scale chemical gradients and heterogeneous distributions of microbial habitats and activity in peat soils. Permafrost peat plateaus have the same essential subsurface characteristics as other widely organic soil-covered peatlands, where the hydraulic conductivity is related to the degree of decomposition and soil compression. Increasing levels of decomposition correspond with a reduction of effective pore diameter and consequently restrict water and solute flow (by several orders of magnitude in hydraulic conductivity between the ground surface and a depth of 50 cm). In this presentation, we present the current knowledge of key physical and hydraulic properties related to the structure of globally available peat soils and discuss their implications for water storage, flow and the migration of solutes.

Iron in the Fire: Searching for Fire's Magnetic Fingerprint using Controlled Heating Experiments, High-Resolution FORCs, IRM Coercivity Spectra, and Low-Temperature Remanence Experiments

Science.gov (United States)

Lippert, P. C.; Reiners, P. W.

2014-12-01

Evidence for recent climate-wildfire linkages underscores the need for better understanding of relationships between wildfire and major climate shifts in Earth history, which in turn offers the potential for prognoses for wildfire and human adaptations to it. In particular, what are the links between seasonality and wildfire frequency and severity, and what are the feedbacks between wildfire, landscape evolution, and biogeochemical cycles, particularly the carbon and iron cycles? A key first step in addressing these questions is recovering well-described wildfire records from a variety of paleolandscapes and paleoclimate regimes. Although charcoal and organic biomarkers are commonly used indicators of fire, taphonomic processes and time-consuming analytical preparations often preclude their routine use in some environments and in high-stratigraphic resolution paleowildfire surveying. The phenomenological relationship between fire and magnetic susceptibility can make it a useful surveying tool, but increased magnetic susceptibility in sediments is not unique to fire, and thus limits its diagnostic power. Here we utilize component-specific rock magnetic methods and analytical techniques to identify the rock magnetic fingerprint of wildfire. We use a custom-designed air furnace, a series of iron-free laboratory soils, natural saprolites and soils, and fuels from Arizona Ponderosa pine forests and grasslands to simulate wildfire in a controlled and monitored environment. Soil-ash residues and soil and fuel controls were then characterized using First Order Reversal Curve (FORC) patterns, DC backfield IRM coercivity spectra, low-temperature SIRM demagnetization behavior, and low-temperature cycling of room-temperature SIRM behavior. We will complement these magnetic analyses with high-resolution TEM of magnetic extracts. Here we summarize the systematic changes to sediment magnetism as pyrolitized organic matter is incorporated into artificial and natural soils. These

A Global Survey of Cloud Thermodynamic Phase using High Spatial Resolution VSWIR Spectroscopy, 2005-2015

Science.gov (United States)

Thompson, D. R.; Kahn, B. H.; Green, R. O.; Chien, S.; Middleton, E.; Tran, D. Q.

2017-12-01

Clouds' variable ice and liquid content significantly influences their optical properties, evolution, and radiative forcing potential (Tan and Storelvmo, J. Atmos. Sci, 73, 2016). However, most remote measurements of thermodynamic phase have spatial resolutions of 1 km or more and are insensitive to mixed phases. This under-constrains important processes, such as spatial partitioning within mixed phase clouds, that carry outsize radiative forcing impacts. These uncertainties could shift Global Climate Model (GCM) predictions of future warming by over 1 degree Celsius (Tan et al., Science 352:6282, 2016). Imaging spectroscopy of reflected solar energy from the 1.4 - 1.8 μm shortwave infrared (SWIR) spectral range can address this observational gap. These observations can distinguish ice and water absorption, providing a robust and sensitive measurement of cloud top thermodynamic phase including mixed phases. Imaging spectrometers can resolve variations at scales of tens to hundreds of meters (Thompson et al., JGR-Atmospheres 121, 2016). We report the first such global high spatial resolution (30 m) survey, based on data from 2005-2015 acquired by the Hyperion imaging spectrometer onboard NASA's EO-1 spacecraft (Pearlman et al., Proc. SPIE 4135, 2001). Estimated seasonal and latitudinal distributions of cloud thermodynamic phase generally agree with observations made by other satellites such as the Atmospheric Infrared Sounder (AIRS). Variogram analyses reveal variability at different spatial scales. Our results corroborate previously observed zonal distributions, while adding insight into the spatial scales of processes governing cloud top thermodynamic phase. Figure: Thermodynamic phase retrievals. Top: Example of a cloud top thermodynamic phase map from the EO-1/Hyperion. Bottom: Latitudinal distributions of pure and mixed phase clouds, 2005-2015, showing Liquid Thickness Fraction (LTF). LTF=0 corresponds to pure ice absorption, while LTF=1 is pure liquid. The

Long-Term, High-Resolution Survey of Atmospheric Aerosols over Egypt with NASA’s MODIS Data

Directory of Open Access Journals (Sweden)

Mohammed Shokr

2017-10-01

Full Text Available A decadal survey of atmospheric aerosols over Egypt and selected cities and regions is presented using daily aerosol optical depth (AOD data from NASA’s Moderate Resolution Imaging Spectroradiometer (MODIS at 550 nm wavelength onboard the Aqua satellite. We explore the AOD spatio-temporal variations over Egypt during a 12-year record (2003 to 2014 using the MODIS high-resolution (10 km Level 2 data product. Five cities and two geographic regions that feature different landscape and human activities were selected for detailed analysis. For most of the examined areas, AOD is found to be most frequent in the 0.2–0.3 range, and the highest mean AOD was found to be over Cairo, Alexandria, and the Nile Delta region. Severe events are identified based on AOD higher than a selected threshold. Most of these events are engendered by sand and dust storms that originate from the Western Desert during January–April. Spatial analysis indicates that they cover the Nile Delta region, including cities of Cairo and Alexandria, on the same day. Examination of the spatial gradient of AOD along the four cardinal directions originating from the city’s center reveals seasonally dependent gradients in some cases. The gradients have been linked to locations of industrial activity. No trend of AOD has been observed in the studied areas during the study period, though data from Cairo and Asyut reveal a slight linear increase of AOD. Considering Cairo is commonly perceived as a city of poor air quality, the results show that local events are fairly constrained. The study highlights spatial and seasonal distributions of AOD and links them to geographic and climatic conditions across the country.

HIGH-RESOLUTION 8 mm AND 1 cm POLARIZATION OF IRAS 4A FROM THE VLA NASCENT DISK AND MULTIPLICITY (VANDAM) SURVEY

Energy Technology Data Exchange (ETDEWEB)

Cox, Erin G.; Harris, Robert J.; Looney, Leslie W.; Segura-Cox, Dominique M. [Department of Astronomy, University of Illinois at Urbana-Champaign, Urbana, IL 61801 (United States); Tobin, John [Leiden Observatory, Leiden University, P.O. Box 9513, 2000-RA Leiden (Netherlands); Li, Zhi-Yun [Department of Astronomy, University of Virginia, Charlottesville, VA 22903 (United States); Tychoniec, Łukasz [Astronomical Observatory Institute, Faculty of Physics, A. Mickiewicz University, Słoneczna 36, PL-60-268 Poznań (Poland); Chandler, Claire J.; Perez, Laura M. [National Radio Astronomy Observatory, Socorro, NM 87801 (United States); Dunham, Michael M. [Harvard-Smithsonian Center for Astrophysics, Cambridge, MA 02138 (United States); Kratter, Kaitlin [Steward Observatory, University of Arizona, Tucson, AZ 85721 (United States); Melis, Carl [Center for Astrophysics and Space Sciences, University of California, San Diego, CA 92093 (United States); Sadavoy, Sarah I., E-mail: egcox2@illinois.edu [Max-Planck-Institut für Astronomie, D-69117 Heidelberg (Germany)

2015-12-01

Magnetic fields can regulate disk formation, accretion, and jet launching. Until recently, it has been difficult to obtain high-resolution observations of the magnetic fields of the youngest protostars in the critical region near the protostar. The VANDAM survey is observing all known protostars in the Perseus Molecular Cloud. Here we present the polarization data of IRAS 4A. We find that with ∼0.″2 (50 AU) resolution at λ = 8.1 and 10.3 mm, the inferred magnetic field is consistent with a circular morphology, in marked contrast with the hourglass morphology seen on larger scales. This morphology is consistent with frozen-in field lines that were dragged in by rotating material entering the infall region. The field morphology is reminiscent of rotating circumstellar material near the protostar. This is the first polarization detection of a protostar at these wavelengths. We conclude from our observations that the dust emission is optically thin with β ∼ 1.3, suggesting that millimeter-/centimeter-sized grains have grown and survived in the short lifetime of the protostar.

Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

Science.gov (United States)

Smith, P.; Cotrufo, M. F.; Rumpel, C.; Paustian, K.; Kuikman, P. J.; Elliott, J. A.; McDowell, R.; Griffiths, R. I.; Asakawa, S.; Bustamante, M.; House, J. I.; Sobocká, J.; Harper, R.; Pan, G.; West, P. C.; Gerber, J. S.; Clark, J. M.; Adhya, T.; Scholes, R. J.; Scholes, M. C.

2015-06-01

Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can either provide co-benefits to other services or can result in trade-offs. In this critical review, we report the state-of-the-art understanding concerning the biogeochemical cycles and biodiversity in soil, and relate these to the provisioning, regulating, supporting and cultural ecosystem services which they underpin. We then outline key knowledge gaps and research challenges, before providing recommendations for management activities to support the continued delivery of ecosystem services from soils. We conclude that although there are knowledge gaps that require further research, enough is known to start improving soils globally. The main challenge is in finding ways to share knowledge with soil managers and policy-makers, so that best-practice management can be implemented. A key element of this knowledge sharing must be in raising awareness of the multiple ecosystem services underpinned by soils, and the natural capital they provide. The International Year of Soils in 2015 presents the perfect opportunity to begin a step-change in how we harness scientific knowledge to bring about more sustainable use of soils for a secure global society.

Biogeochemical studies of wintering waterfowl in the Imperial and Sacramento Valleys

Energy Technology Data Exchange (ETDEWEB)

Koranda, J.J.; Stuart, M.; Thompson, S.; Conrado, C.

1979-10-01

Trace and major elemental composition were determined in the organs of wintering waterfowl in the Imperial and Sacramento Valleys of California, and in soils, sediments, and agricultural fertilizer that constitute the various sources of elements in the waterfowl. These data provide a biogeochemical baseline for waterfowl populations wintering in an area being developed for geothermal power. This baseline in the Imperial Valley is affected by soil and sediment composition, agricultural effluents in irrigation and stream water, and spent shot deposited by hunters in waterfowl habitats. The waterfowl acquire a set of trace elements from these sources and concentrations increase in their organs over the wintering period. Nickel, arsenic, selenium, bromine, and lead are the primary elements acquired from soil sources, agricultural effluents, and spent shot in the Imperial Valley. The assessment of effects from geothermal effluents on waterfowl populations in complex because there are large influxes of materials into the Imperial Valley ecosystem that contain trace elements, i.e., irrigation water, phosphatic fertilizers, pesticides, and lead shot. Multiple sources exist for many elements prominent in the expected geothermal effluents. The relationships between the two California valleys, the Imperial and Sacramento, are apparent in the trace element concentrations in the organs of waterfowl obtained in those two valleys. Arsenic is absent in the waterfowl organs obtained in the Sacramento Valley and relatively common in the Imperial Valley waterfowl. The effect of any release of geothermal effluent in the Imperial Valley waterfowl habitats will be difficult to describe because of the complexity of the biogeochemical baseline and the multiple sources of trace and major elements in the ecosystem.

THE SPITZER INFRARED NEARBY GALAXIES SURVEY: A HIGH-RESOLUTION SPECTROSCOPY ANTHOLOGY

International Nuclear Information System (INIS)

Dale, D. A.; Schlawin, E. A.; Cohen, S. A.; Johnson, L. C.; Staudaher, S.; Smith, J. D. T.; Armus, L.; Helou, G.; Jarrett, T. H.; Murphy, E. J.; Sheth, K.; Buckalew, B. A.; Moustakas, J.; Roussel, H.; Bot, C.; Calzetti, D.; Engelbracht, C. W.; Gordon, K. D.; Hollenbach, D. J.; Kennicutt, R. C.

2009-01-01

High-resolution mid-infrared spectra are presented for 155 nuclear and extranuclear regions from the Spitzer Infrared Nearby Galaxies Survey (SINGS). The fluxes for nine atomic forbidden and three molecular hydrogen mid-infrared emission lines are also provided, along with upper limits in key lines for infrared-faint targets. The SINGS sample shows a wide range in the ratio of [S III] 18.71 μm/[S III] 33.48 μm, but the average ratio of the ensemble indicates a typical interstellar electron density of 300-400 cm -3 on ∼23'' x 15'' scales and 500-600 cm -3 using ∼11'' x 9'' apertures, independent of whether the region probed is a star-forming nuclear, a star-forming extranuclear, or an active galactic nuclei (AGN) environment. Evidence is provided that variations in gas-phase metallicity play an important role in driving variations in radiation field hardness, as indicated by [Ne III] 15.56 μm/[Ne II] 12.81 μm, for regions powered by star formation. Conversely, the radiation hardness for galaxy nuclei powered by accretion around a massive black hole is independent of metal abundance. Furthermore, for metal-rich environments AGN are distinguishable from star-forming regions by significantly larger [Ne III] 15.56 μm/[Ne II] 12.81 μm ratios. Finally, [Fe II] 25.99 μm/[Ne II] 12.81 μm versus [Si II] 34.82 μm/[S III] 33.48 μm also provides an empirical method for discerning AGN from normal star-forming sources. However, similar to [Ne III] 15.56 μm/[Ne II] 12.81 μm, these mid-infrared line ratios lose their AGN/star-formation diagnostic powers for very low metallicity star-forming systems with hard radiation fields.

PRELIMINARY BIOGEOCHEMICAL DATA ON MICROBIAL CARBONATOGENESIS IN ANCIENT EXTREME ENVIRONMENTS (KESS-KESS MOUNDS, MOROCCO

Directory of Open Access Journals (Sweden)

ADRIANO GUIDO

2013-03-01

Full Text Available The Devonian Kess-Kess mounds, cropping out in the Hamar Laghdad Ridge (SE Morocco, provide a useful case-study for understanding the relationships between the microbial metabolic activities and micrite precipitation in an extreme environment. Very fine dark and white wrinkled laminae record microbial activity and the geochemistry of the organic matter allows the  characterization of the source organisms. The biogeochemical characterization of extracted organic matter was performed through the functional group analyses by FT-IR Spectroscopy. FT-IR parameters indicate a marine origin and low thermal evolution for the organic material. The organic matter is characterized by the presence of stretching ?C=C vibrations attributable to alkene and/or unsaturated carboxylic acids. Preliminary analysis with GC-MS provides evidence for an autochthonous (biogeochemical signatures of microbial carbonate precipitation in an ancient extreme environment may have implications in astrobiological research considering the recent discovery of carbonate deposits on Mars. 

The Biogeochemical Response to Inter-decadal Atmospheric Forcing Across Watershed Scales in Canada's Subarctic

Science.gov (United States)

Spence, C.

2016-12-01

Rapid landscape changes in the circumpolar north have been documented, including degradation of permafrost and alteration of vegetation communities. These are widely expected to have profound impacts on the freshwater fluxes of solutes, carbon and nitrogen across the Arctic domain. However, there have been few attempts to document trends across the diversity of landscapes in the circumpolar north, mostly due to a dearth of long term data. Some of the fastest rates of warming over the last thirty years have occurred in Canada's Northwest Territories, so this region should already exhibit changes in aquatic chemistry. Observations of chemical loads in streams draining the ice-poor discontinuous permafrost subarctic Canadian Shield region were analyzed with the goal of determining how basins across scales have responded to changes in atmospheric forcing. Smaller streams, with much closer linkages to terrestrial processes, experienced a synchrony among hydrological and biogeochemical processes that enhanced chemical flux above that in their larger counterparts. This demonstrates that there are differences in resiliency and resistance across scales to climate change. These results highlight the importance of biogeochemical process understanding to properly explain and predict how chemical loading scales from headwaters to river mouths. This is important information if society is to properly adapt policies for effluent discharge, nearshore marine management, among others.

Morphological, hydrological, biogeochemical and ecological changes and challenges in river restoration - the Thur River case study

Science.gov (United States)

Schirmer, M.; Luster, J.; Linde, N.; Perona, P.; Mitchell, E. A. D.; Barry, D. A.; Hollender, J.; Cirpka, O. A.; Schneider, P.; Vogt, T.; Radny, D.; Durisch-Kaiser, E.

2014-06-01

River restoration can enhance river dynamics, environmental heterogeneity and biodiversity, but the underlying processes governing the dynamic changes need to be understood to ensure that restoration projects meet their goals, and adverse effects are prevented. In particular, we need to comprehend how hydromorphological variability quantitatively relates to ecosystem functioning and services, biodiversity as well as ground- and surface water quality in restored river corridors. This involves (i) physical processes and structural properties, determining erosion and sedimentation, as well as solute and heat transport behavior in surface water and within the subsurface; (ii) biogeochemical processes and characteristics, including the turnover of nutrients and natural water constituents; and (iii) ecological processes and indicators related to biodiversity and ecological functioning. All these aspects are interlinked, requiring an interdisciplinary investigation approach. Here, we present an overview of the recently completed RECORD (REstored CORridor Dynamics) project in which we combined physical, chemical, and biological observations with modeling at a restored river corridor of the perialpine Thur River in Switzerland. Our results show that river restoration, beyond inducing morphologic changes that reshape the river bed and banks, triggered complex spatial patterns of bank infiltration, and affected habitat type, biotic communities and biogeochemical processes. We adopted an interdisciplinary approach of monitoring the continuing changes due to restoration measures to address the following questions: How stable is the morphological variability established by restoration? Does morphological variability guarantee an improvement in biodiversity? How does morphological variability affect biogeochemical transformations in the river corridor? What are some potential adverse effects of river restoration? How is river restoration influenced by catchment-scale hydraulics

The two-layer geochemical structure of modern biogeochemical provinces and its significance for spatially adequate ecological evaluations and decisions

Science.gov (United States)

Korobova, Elena; Romanov, Sergey

2014-05-01

Contamination of the environment has reached such a scale that ecogeochemical situation in any area can be interpreted now as a result of the combined effect of natural and anthropogenic factors. The areas that appear uncomfortable for a long stay can have natural and anthropogenic genesis, but the spatial structure of such biogeochemical provinces is in any case formed of a combination of natural and technogenic fields of chemical elements. Features of structural organization and the difference in factors and specific time of their formation allow their separation on one hand and help in identification of areas with different ecological risks due to overlay of the two structures on the other. Geochemistry of soil cover reflects the long-term result of the naturally balanced biogeochemical cycles, therefore the soil geochemical maps of the undisturbed areas may serve the basis for evaluation of the natural geochemical background with due regard to the main factors of geochemical differentiation in biosphere. Purposeful and incidental technogenic concentrations and dispersions of chemical elements of specific (mainly mono- or polycentric) structure are also fixed in soils that serve as secondary sources of contamination of the vegetation cover and local food chains. Overlay of the two structures forms specific heterogeneity of modern biogeochemical provinces with different risk for particular groups of people, animals and plants adapted to specific natural geochemical background within particular concentration interval. The developed approach is believed to be helpful for biogeochemical regionalizing of modern biosphere (noosphere) and for spatially adequate ecogeochemical evaluation of the environment and landuse decisions. It allows production of a set of applied geochemical maps such as: 1) health risk due to chemical elements deficiency and technogenic contamination accounting of possible additive effects; 2) adequate soil fertilization and melioration with due

Early Adolescent Health Risk Behaviors, Conflict Resolution Strategies, and School Climate

Science.gov (United States)

LaRusso, Maria; Selman, Robert

2011-01-01

Drawing upon an ethnically and socio-economically diverse sample of 323 7th grade students from twelve urban schools within one school district, this mixed method study examined early adolescents' self-reported health risk behaviors as related to their conflict resolution strategies and their school's conflict resolution climate. Survey data…

Autonomous Gliders Observed Physical and Biogeochemical Interplay at Submesoscale during Deep Convection in the Gulf of Lions (NW Mediterranean)

Science.gov (United States)

Bosse, A.; Testor, P.; Damien, P.; D'Ortenzio, F.; Prieur, L. M.; Estournel, C.; Marsaleix, P.; Mortier, L.

2016-02-01

Since 2010, sustained observations of the circulation and water properties of the NW Mediterranean Sea have been carried out by gliders in the framework of the MOOSE observatory (Mediterranean Ocean Observatory System for the Environment: http://www.moose-network.fr/). They regularly sampled the wintertime Northern Current (NC), the deep convection zone as well as the North Balearic Front (NBF) collecting a great amount of physical and biogeochemical measurements.During periods of deep convection, the offshore mixed layer can reach great depths (>2300 m) in the Gulf of Lions. Baroclinic fronts then become very intense and reveal a lot of variability at submesoscale in the upper 500 m or so. In terms of process, symmetric instability has been evidenced to occurr during strong wind events by gliders measurements. Complementary analysis performed with the help of a high-resolution regional model (dx,dy=1 km) highlight the prominent role of downfront winds in triggering this instability. Important vertical exchanges of oceanic tracers at the front approximately aligned with isopycnals of magnitude O(100m/day) occur in response to this strong atmospheric forcing. Finally, gliders measurements of Chl-a fluorescence show how this frontal instability seems to stimulate phytoplankton growth in frontal regions during harsh wintertime conditions.

Influence of harvesting on biogeochemical exchange in sheetflow and soil processes in a eutrophic floodplain forest

Science.gov (United States)

B.G. Lockaby; R.G. Clawson; K. Flynn; Robert Rummer; S. Meadows; B Stokes; John A. Stanturf

1997-01-01

Floodplain forests contribute to the maintenance of water quality as a result of various biogeochemical transformations which occur within them. In particular, they can serve as sinks for nutrient run-off from adjacent uplands or as nutrient transformers as water moves downstream. However, little is known about the potential that land management activities may have for...

Tidal Pumping-Induced Nutrients Dynamics and Biogeochemical Implications in an Intertidal Aquifer

Science.gov (United States)

Liu, Yi; Jiao, Jiu Jimmy; Liang, Wenzhao; Luo, Xin

2017-12-01

Tidal pumping is a major driving force affecting water exchange between land and sea, biogeochemical reactions in the intertidal aquifer, and nutrient loading to the sea. At a sandy beach of Tolo Harbour, Hong Kong, the nutrient (NH4+, NO2-, NO3-, and PO43-) dynamic in coastal groundwater mixing zone (CGMZ) is found to be fluctuated with tidal oscillation. Nutrient dynamic is mainly controlled by tidal pumping-induced organic matter that serves as a reagent of remineralization in the aquifer. NH4+, NO2-, and PO43- are positively correlated with salinity. Both NH4+ and PO43- have negative correlations with oxidation/reduction potential. NH4+ is the major dissolved inorganic nitrogen species in CGMZ. The adsorption of PO43- onto iron oxides occurs at the deep transition zone with a salinity of 5-10 practical salinity unit (psu), and intensive N-loss occurs in near-surface area with a salinity of 10-25 psu. The biogeochemical reactions, producing PO43- and consuming NH4+, are synergistic effect of remineralization-nitrification-denitrification. In CGMZ, the annual NH4+ loss is estimated to be 4.32 × 105 mol, while the minimum annual PO43- production is estimated to be 2.55 × 104 mol. Applying these rates to the entire Tolo Harbour, the annual NH4+ input to the harbor through the remineralization of organic matters is estimated to be 1.02 × 107 mol. The annual NH4+ loss via nitrification is 1.32 × 107 mol, and the annual PO43- production is 7.76 × 105 mol.

Global biogeochemical cycle of vanadium.

Science.gov (United States)

Schlesinger, William H; Klein, Emily M; Vengosh, Avner

2017-12-26

Synthesizing published data, we provide a quantitative summary of the global biogeochemical cycle of vanadium (V), including both human-derived and natural fluxes. Through mining of V ores (130 × 10 9 g V/y) and extraction and combustion of fossil fuels (600 × 10 9 g V/y), humans are the predominant force in the geochemical cycle of V at Earth's surface. Human emissions of V to the atmosphere are now likely to exceed background emissions by as much as a factor of 1.7, and, presumably, we have altered the deposition of V from the atmosphere by a similar amount. Excessive V in air and water has potential, but poorly documented, consequences for human health. Much of the atmospheric flux probably derives from emissions from the combustion of fossil fuels, but the magnitude of this flux depends on the type of fuel, with relatively low emissions from coal and higher contributions from heavy crude oils, tar sands bitumen, and petroleum coke. Increasing interest in petroleum derived from unconventional deposits is likely to lead to greater emissions of V to the atmosphere in the near future. Our analysis further suggests that the flux of V in rivers has been incremented by about 15% from human activities. Overall, the budget of dissolved V in the oceans is remarkably well balanced-with about 40 × 10 9 g V/y to 50 × 10 9 g V/y inputs and outputs, and a mean residence time for dissolved V in seawater of about 130,000 y with respect to inputs from rivers.

HiPS - Hierarchical Progressive Survey Version 1.0

Science.gov (United States)

Fernique, Pierre; Allen, Mark; Boch, Thomas; Donaldson, Tom; Durand, Daniel; Ebisawa, Ken; Michel, Laurent; Salgado, Jesus; Stoehr, Felix; Fernique, Pierre

2017-05-01

This document presents HiPS, a hierarchical scheme for the description, storage and access of sky survey data. The system is based on hierarchical tiling of sky regions at finer and finer spatial resolution which facilitates a progressive view of a survey, and supports multi-resolution zooming and panning. HiPS uses the HEALPix tessellation of the sky as the basis for the scheme and is implemented as a simple file structure with a direct indexing scheme that leads to practical implementations.

The TESS-HERMES survey data release 1: high-resolution spectroscopy of the TESS southern continuous viewing zone

Science.gov (United States)

Sharma, Sanjib; Stello, Dennis; Buder, Sven; Kos, Janez; Bland-Hawthorn, Joss; Asplund, Martin; Duong, Ly; Lin, Jane; Lind, Karin; Ness, Melissa; Huber, Daniel; Zwitter, Tomaz; Traven, Gregor; Hon, Marc; Kafle, Prajwal R.; Khanna, Shourya; Saddon, Hafiz; Anguiano, Borja; Casey, Andrew R.; Freeman, Ken; Martell, Sarah; De Silva, Gayandhi M.; Simpson, Jeffrey D.; Wittenmyer, Rob A.; Zucker, Daniel B.

2018-01-01

The Transiting Exoplanet Survey Satellite (TESS) will provide high-precision time series photometry for millions of stars with at least a half-hour cadence. Of particular interest are the circular regions of 12° radius centred around the ecliptic poles that will be observed continuously for a full year. Spectroscopic stellar parameters are desirable to characterize and select suitable targets for TESS, whether they are focused on exploring exoplanets, stellar astrophysics or Galactic archaeology. Here, we present spectroscopic stellar parameters (Teff, log g, [Fe/H], v sin i, vmicro) for about 16 000 dwarf and subgiant stars in TESS' southern continuous viewing zone. For almost all the stars, we also present Bayesian estimates of stellar properties including distance, extinction, mass, radius and age using theoretical isochrones. Stellar surface gravity and radius are made available for an additional set of roughly 8500 red giants. All our target stars are in the range 10 using the High Efficiency and Resolution Multi-Element Spectrograph (HERMES; R ∼ 28 000) at the Anglo-Australian Telescope as part of the TESS-HERMES survey. Comparing our results with the TESS Input Catalogue (TIC) shows that the TIC is generally efficient in separating dwarfs and giants, but it has flagged more than 100 cool dwarfs (Teff < 4800 K) as giants, which ought to be high-priority targets for the exoplanet search. The catalogue can be accessed via http://www.physics.usyd.edu.au/tess-hermes/, or at Mikulski Archive for Space Telescopes (MAST).

Workplace conflict resolution in Wales: The unexpected prevalence of alternative dispute resolution

OpenAIRE

Hann, Deborah Jane; Nash, David Roger; Heery, Edmund

2016-01-01

Alternative dispute resolution (ADR) practices are increasingly being viewed as an improved way\\ud of resolving workplace conflict. Much of the empirical literature focuses on the spread of ADR\\ud amongst US organizations with little evidence of such approaches having crossed the Atlantic.\\ud This article presents new survey evidence that examines the extent to which ADR has been\\ud adopted as a strategy to resolve different forms of conflict by Welsh firms in the UK. The factors\\ud that impa...

Improving National Capability in Biogeochemical Flux Modelling: the UK Environmental Virtual Observatory (EVOp)

Science.gov (United States)

Johnes, P.; Greene, S.; Freer, J. E.; Bloomfield, J.; Macleod, K.; Reaney, S. M.; Odoni, N. A.

2012-12-01

The best outcomes from watershed management arise where policy and mitigation efforts are underpinned by strong science evidence, but there are major resourcing problems associated with the scale of monitoring needed to effectively characterise the sources rates and impacts of nutrient enrichment nationally. The challenge is to increase national capability in predictive modelling of nutrient flux to waters, securing an effective mechanism for transferring knowledge and management tools from data-rich to data-poor regions. The inadequacy of existing tools and approaches to address these challenges provided the motivation for the Environmental Virtual Observatory programme (EVOp), an innovation from the UK Natural Environment Research Council (NERC). EVOp is exploring the use of a cloud-based infrastructure in catchment science, developing an exemplar to explore N and P fluxes to inland and coastal waters in the UK from grid to catchment and national scale. EVOp is bringing together for the first time national data sets, models and uncertainty analysis into cloud computing environments to explore and benchmark current predictive capability for national scale biogeochemical modelling. The objective is to develop national biogeochemical modelling capability, capitalising on extensive national investment in the development of science understanding and modelling tools to support integrated catchment management, and supporting knowledge transfer from data rich to data poor regions, The AERC export coefficient model (Johnes et al., 2007) has been adapted to function within the EVOp cloud environment, and on a geoclimatic basis, using a range of high resolution, geo-referenced digital datasets as an initial demonstration of the enhanced national capacity for N and P flux modelling using cloud computing infrastructure. Geoclimatic regions are landscape units displaying homogenous or quasi-homogenous functional behaviour in terms of process controls on N and P cycling

Reconciling surface ocean productivity, export fluxes and sediment composition in a global biogeochemical ocean model

Directory of Open Access Journals (Sweden)

M. Gehlen

2006-01-01

Full Text Available This study focuses on an improved representation of the biological soft tissue pump in the global three-dimensional biogeochemical ocean model PISCES. We compare three parameterizations of particle dynamics: (1 the model standard version including two particle size classes, aggregation-disaggregation and prescribed sinking speed; (2 an aggregation-disaggregation model with a particle size spectrum and prognostic sinking speed; (3 a mineral ballast parameterization with no size classes, but prognostic sinking speed. In addition, the model includes a description of surface sediments and organic carbon early diagenesis. Model output is compared to data or data based estimates of ocean productivity, pe-ratios, particle fluxes, surface sediment bulk composition and benthic O2 fluxes. Model results suggest that different processes control POC fluxes at different depths. In the wind mixed layer turbulent particle coagulation appears as key process in controlling pe-ratios. Parameterization (2 yields simulated pe-ratios that compare well to observations. Below the wind mixed layer, POC fluxes are most sensitive to the intensity of zooplankton flux feeding, indicating the importance of zooplankton community composition. All model parameters being kept constant, the capability of the model to reproduce yearly mean POC fluxes below 2000 m and benthic oxygen demand does at first order not dependent on the resolution of the particle size spectrum. Aggregate formation appears essential to initiate an intense biological pump. At great depth the reported close to constant particle fluxes are most likely the result of the combined effect of aggregate formation and mineral ballasting.

Discounting of quantity surveying fees in South Africa

African Journals Online (AJOL)

by clients have forced Quantity Surveying firms into competition with ... Furthermore, 43% of consulting engineering firms were discounting their fees at a rate of .... Quantity. Surveying services are also offered in the fields of dispute resolution,.

Biogeochemical sensor performance in the SOCCOM profiling float array

Science.gov (United States)

Johnson, Kenneth S.; Plant, Joshua N.; Coletti, Luke J.; Jannasch, Hans W.; Sakamoto, Carole M.; Riser, Stephen C.; Swift, Dana D.; Williams, Nancy L.; Boss, Emmanuel; Haëntjens, Nils; Talley, Lynne D.; Sarmiento, Jorge L.

2017-08-01

The Southern Ocean Carbon and Climate Observations and Modeling (SOCCOM) program has begun deploying a large array of biogeochemical sensors on profiling floats in the Southern Ocean. As of February 2016, 86 floats have been deployed. Here the focus is on 56 floats with quality-controlled and adjusted data that have been in the water at least 6 months. The floats carry oxygen, nitrate, pH, chlorophyll fluorescence, and optical backscatter sensors. The raw data generated by these sensors can suffer from inaccurate initial calibrations and from sensor drift over time. Procedures to correct the data are defined. The initial accuracy of the adjusted concentrations is assessed by comparing the corrected data to laboratory measurements made on samples collected by a hydrographic cast with a rosette sampler at the float deployment station. The long-term accuracy of the corrected data is compared to the GLODAPv2 data set whenever a float made a profile within 20 km of a GLODAPv2 station. Based on these assessments, the fleet average oxygen data are accurate to 1 ± 1%, nitrate to within 0.5 ± 0.5 µmol kg-1, and pH to 0.005 ± 0.007, where the error limit is 1 standard deviation of the fleet data. The bio-optical measurements of chlorophyll fluorescence and optical backscatter are used to estimate chlorophyll a and particulate organic carbon concentration. The particulate organic carbon concentrations inferred from optical backscatter appear accurate to with 35 mg C m-3 or 20%, whichever is larger. Factors affecting the accuracy of the estimated chlorophyll a concentrations are evaluated.Plain Language SummaryThe ocean science community must move toward greater use of autonomous platforms and sensors if we are to extend our knowledge of the effects of climate driven change within the ocean. Essential to this shift in observing strategies is an understanding of the performance that can be obtained from biogeochemical sensors on platforms deployed for years and the

Key biogeochemical factors affecting soil carbon storage in Posidonia meadows

KAUST Repository

Serrano, Oscar

2016-08-15

Biotic and abiotic factors influence the accumulation of organic carbon (C-org) in seagrass ecosystems. We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of Corg. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4 m depth) accumulated 3- to 4-fold higher C-org stocks (averaging 6.3 kg C-org m(-2) at 3- to 4-fold higher rates (12.8 gC(org) m(-2) yr(-1) ) compared to meadows closer to the deep limits of distribution (at 6-8 m depth; 1.8 kg C-org m(-2) and 3.6 g C-org m(-2) yr(-1) . In shallower meadows, C-org stocks were mostly derived from seagrass detritus (88% in average) compared to meadows closer to the deep limit of distribution (45% on average). In addition, soil accumulation rates and fine-grained sediment content (< 0.125 mm) in shallower meadows (2.0 mm yr(-1) and 9 %, respectively) were approximately 2-fold higher than in deeper meadows (1.2 mm yr(-1) and 5 %, respectively). The C-org stocks and accumulation rates accumulated over the last 500 years in bare sediments (0.6 kg C-org m(-2) and 1.2 g C-org m(-2) yr(-1)were 3- to 11-fold lower than in P. sinuosa meadows, while fine-grained sediment content (1 %) and seagrass detritus contribution to the Corg pool (20 %) were 8- and 3-fold lower than in Posidonia meadows, respectively. The patterns found support the hypothesis that Corg storage in seagrass soils is influenced by interactions of biological (e.g., meadow productivity, cover and density), chemical (e.g., recalcitrance of Corg stocks) and physical (e.g., hydrodynamic energy and soil accumulation rates) factors within the meadow. We conclude that there is a need to improve global estimates of seagrass carbon storage accounting for biogeochemical factors driving variability within habitats.

An atlas of high-resolution IRAS maps on nearby galaxies

Science.gov (United States)

Rice, Walter

1993-01-01

An atlas of far-infrared IRAS maps with near 1 arcmin angular resolution of 30 optically large galaxies is presented. The high-resolution IRAS maps were produced with the Maximum Correlation Method (MCM) image construction and enhancement technique developed at IPAC. The MCM technique, which recovers the spatial information contained in the overlapping detector data samples of the IRAS all-sky survey scans, is outlined and tests to verify the structural reliability and photometric integrity of the high-resolution maps are presented. The infrared structure revealed in individual galaxies is discussed. The atlas complements the IRAS Nearby Galaxy High-Resolution Image Atlas, the high-resolution galaxy images encoded in FITS format, which is provided to the astronomical community as an IPAC product.

Resolution analyses for selecting an appropriate airborne electromagnetic (AEM) system

DEFF Research Database (Denmark)

Christensen, N.B.; Lawrie, Ken

2012-01-01

is necessary and has to be approached in a pragmatic way involving a range of different aspects. In this paper, we concentrate on the resolution analysis perspective and demonstrate that the inversion analysis must be preferred over the derivative analysis because it takes parameter coupling into account, and...... resolution for a series of models relevant to the survey area by comparing the sum over the data of squares of noise-normalised derivatives. We compare this analysis method with a resolution analysis based on the posterior covariance matrix of an inversion formulation. Both of the above analyses depend......, furthermore, that the derivative analysis generally overestimates the resolution capability. Finally we show that impulse response data are to be preferred over step response data for near-surface resolution....

High-resolution gravity and seismic-refraction surveys of the Smoke Tree Wash area, Joshua Tree National Park, California

Science.gov (United States)

Langenheim, Victoria E.; Rymer, Michael J.; Catchings, Rufus D.; Goldman, Mark R.; Watt, Janet T.; Powell, Robert E.; Matti, Jonathan C.

2016-03-02

We describe high-resolution gravity and seismic refraction surveys acquired to determine the thickness of valley-fill deposits and to delineate geologic structures that might influence groundwater flow beneath the Smoke Tree Wash area in Joshua Tree National Park. These surveys identified a sedimentary basin that is fault-controlled. A profile across the Smoke Tree Wash fault zone reveals low gravity values and seismic velocities that coincide with a mapped strand of the Smoke Tree Wash fault. Modeling of the gravity data reveals a basin about 2–2.5 km long and 1 km wide that is roughly centered on this mapped strand, and bounded by inferred faults. According to the gravity model the deepest part of the basin is about 270 m, but this area coincides with low velocities that are not characteristic of typical basement complex rocks. Most likely, the density contrast assumed in the inversion is too high or the uncharacteristically low velocities represent highly fractured or weathered basement rocks, or both. A longer seismic profile extending onto basement outcrops would help differentiate which scenario is more accurate. The seismic velocities also determine the depth to water table along the profile to be about 40–60 m, consistent with water levels measured in water wells near the northern end of the profile.

Assessing the utility of frequency dependent nudging for reducing biases in biogeochemical models

Science.gov (United States)

Lagman, Karl B.; Fennel, Katja; Thompson, Keith R.; Bianucci, Laura

2014-09-01

Bias errors, resulting from inaccurate boundary and forcing conditions, incorrect model parameterization, etc. are a common problem in environmental models including biogeochemical ocean models. While it is important to correct bias errors wherever possible, it is unlikely that any environmental model will ever be entirely free of such errors. Hence, methods for bias reduction are necessary. A widely used technique for online bias reduction is nudging, where simulated fields are continuously forced toward observations or a climatology. Nudging is robust and easy to implement, but suppresses high-frequency variability and introduces artificial phase shifts. As a solution to this problem Thompson et al. (2006) introduced frequency dependent nudging where nudging occurs only in prescribed frequency bands, typically centered on the mean and the annual cycle. They showed this method to be effective for eddy resolving ocean circulation models. Here we add a stability term to the previous form of frequency dependent nudging which makes the method more robust for non-linear biological models. Then we assess the utility of frequency dependent nudging for biological models by first applying the method to a simple predator-prey model and then to a 1D ocean biogeochemical model. In both cases we only nudge in two frequency bands centered on the mean and the annual cycle, and then assess how well the variability in higher frequency bands is recovered. We evaluate the effectiveness of frequency dependent nudging in comparison to conventional nudging and find significant improvements with the former.

Biogeochemical studies of technetium in marine and estuarine ecosystems. Progress report, 1 July 1980-31 July 1981

International Nuclear Information System (INIS)

Beasley, T.M.

1981-01-01

This report summarizes progress from July 1980 through July 1981 on studies dealing with the biogeochemical behavior of technetium in marine and estuarine ecosystems. While the duration of the research has been slightly over two years, the results of our experiments have substantially extended our understanding of the environmental behavior of Tc

Global Land Survey Impervious Mapping Project Web Site

Science.gov (United States)

DeColstoun, Eric Brown; Phillips, Jacqueline

2014-01-01

The Global Land Survey Impervious Mapping Project (GLS-IMP) aims to produce the first global maps of impervious cover at the 30m spatial resolution of Landsat. The project uses Global Land Survey (GLS) Landsat data as its base but incorporates training data generated from very high resolution commercial satellite data and using a Hierarchical segmentation program called Hseg. The web site contains general project information, a high level description of the science, examples of input and output data, as well as links to other relevant projects.

Reconstructing disturbances and their biogeochemical consequences over multiple timescales

Science.gov (United States)

McLauchlan, Kendra K.; Higuera, Philip E.; Gavin, Daniel G.; Perakis, Steven S.; Mack, Michelle C.; Alexander, Heather; Battles, John; Biondi, Franco; Buma, Brian; Colombaroli, Daniele; Enders, Sara K.; Engstrom, Daniel R.; Hu, Feng Sheng; Marlon, Jennifer R.; Marshall, John; McGlone, Matt; Morris, Jesse L.; Nave, Lucas E.; Shuman, Bryan; Smithwick, Erica A.H.; Urrego, Dunia H.; Wardle, David A.; Williams, Christopher J.; Williams, Joseph J.

2014-01-01

Ongoing changes in disturbance regimes are predicted to cause acute changes in ecosystem structure and function in the coming decades, but many aspects of these predictions are uncertain. A key challenge is to improve the predictability of postdisturbance biogeochemical trajectories at the ecosystem level. Ecosystem ecologists and paleoecologists have generated complementary data sets about disturbance (type, severity, frequency) and ecosystem response (net primary productivity, nutrient cycling) spanning decadal to millennial timescales. Here, we take the first steps toward a full integration of these data sets by reviewing how disturbances are reconstructed using dendrochronological and sedimentary archives and by summarizing the conceptual frameworks for carbon, nitrogen, and hydrologic responses to disturbances. Key research priorities include further development of paleoecological techniques that reconstruct both disturbances and terrestrial ecosystem dynamics. In addition, mechanistic detail from disturbance experiments, long-term observations, and chronosequences can help increase the understanding of ecosystem resilience.

Hydrologic Derivatives for Modeling and Analysis—A new global high-resolution database

Science.gov (United States)

Verdin, Kristine L.

2017-07-17

The U.S. Geological Survey has developed a new global high-resolution hydrologic derivative database. Loosely modeled on the HYDRO1k database, this new database, entitled Hydrologic Derivatives for Modeling and Analysis, provides comprehensive and consistent global coverage of topographically derived raster layers (digital elevation model data, flow direction, flow accumulation, slope, and compound topographic index) and vector layers (streams and catchment boundaries). The coverage of the data is global, and the underlying digital elevation model is a hybrid of three datasets: HydroSHEDS (Hydrological data and maps based on SHuttle Elevation Derivatives at multiple Scales), GMTED2010 (Global Multi-resolution Terrain Elevation Data 2010), and the SRTM (Shuttle Radar Topography Mission). For most of the globe south of 60°N., the raster resolution of the data is 3 arc-seconds, corresponding to the resolution of the SRTM. For the areas north of 60°N., the resolution is 7.5 arc-seconds (the highest resolution of the GMTED2010 dataset) except for Greenland, where the resolution is 30 arc-seconds. The streams and catchments are attributed with Pfafstetter codes, based on a hierarchical numbering system, that carry important topological information. This database is appropriate for use in continental-scale modeling efforts. The work described in this report was conducted by the U.S. Geological Survey in cooperation with the National Aeronautics and Space Administration Goddard Space Flight Center.

A comparative analysis to quantify the biogeochemical and biogeophysical cooling effects on climate of a white mustard cover crop

Science.gov (United States)

Ferlicoq, Morgan; Ceschia, Eric; Brut, Aurore; Tallec, Tiphaine; Carrer, Dominique; Pique, Gaetan; Ferroni, Nicole

2017-04-01

During the COP21, agriculture was recognised as a strategic sector and an opportunity to strengthen climate mitigation. In particular, the "4 per 1000" initiative relies upon solutions that refer to agro-ecology, conservation agriculture, … that could lead to increase carbon storage. Among those agro-ecology practices, including cover crops during fallow periods is considered as a fundamental agronomic lever for storing carbon. However, if biogeochemical benefits of cover-crops (CC) have already been addressed, their biogeophysical effects on climate have never been quantified and compared to biogeochemical effects. This comparative study (CC vs. bare soil), quantified and compared biogeochemical (including carbon storage) and biophysical effects (albedo and energy partitioning effect) of CC on climate. An experimental campaign was performed in 2013 in Southwest France, during the fallow period following a winter-wheat crop (and before a maize). The experimental plot was divided in two: the northern part was maintained in bare soil (BS) while white-mustard (WM) was grown during 3-months on the southern part. On each subplot, continuous measurements of CO2, latent and sensible fluxes (by eddy covariance) and solar radiation were acquired. Also, N2O emissions were measured by means of automatic chambers on each subplots. Moreover, by using a Life-Cycle-Analysis approach, each component of the greenhouse gas budget (GHGB) was quantified for each subplot, including emissions associated to field operations (FO). To quantify the albedo induced radiative forcing (RFα) caused by the white-mustard, the bare soil subplot was used as a reference state (IPCC, 2007). Finally, the net radiative forcing for each subplot was calculated as the sum of biogeochemical and biogeophysical (albedo effect) radiative forcing. The white-mustard allowed a net CO2 fixation of 63 g C-eq.m-2, corresponding to 20% of the net annual CO2 flux that year (-332 g C-eq.m-2). Through the WM seeds

Fine-resolution repeat topographic surveying of dryland landscapes using UAS-based structure-from-motion photogrammetry: Assessing accuracy and precision against traditional ground-based erosion measurements

Science.gov (United States)

Gillian, Jeffrey K.; Karl, Jason W.; Elaksher, Ahmed; Duniway, Michael C.

2017-01-01

Structure-from-motion (SfM) photogrammetry from unmanned aerial system (UAS) imagery is an emerging tool for repeat topographic surveying of dryland erosion. These methods are particularly appealing due to the ability to cover large landscapes compared to field methods and at reduced costs and finer spatial resolution compared to airborne laser scanning. Accuracy and precision of high-resolution digital terrain models (DTMs) derived from UAS imagery have been explored in many studies, typically by comparing image coordinates to surveyed check points or LiDAR datasets. In addition to traditional check points, this study compared 5 cm resolution DTMs derived from fixed-wing UAS imagery with a traditional ground-based method of measuring soil surface change called erosion bridges. We assessed accuracy by comparing the elevation values between DTMs and erosion bridges along thirty topographic transects each 6.1 m long. Comparisons occurred at two points in time (June 2014, February 2015) which enabled us to assess vertical accuracy with 3314 data points and vertical precision (i.e., repeatability) with 1657 data points. We found strong vertical agreement (accuracy) between the methods (RMSE 2.9 and 3.2 cm in June 2014 and February 2015, respectively) and high vertical precision for the DTMs (RMSE 2.8 cm). Our results from comparing SfM-generated DTMs to check points, and strong agreement with erosion bridge measurements suggests repeat UAS imagery and SfM processing could replace erosion bridges for a more synoptic landscape assessment of shifting soil surfaces for some studies. However, while collecting the UAS imagery and generating the SfM DTMs for this study was faster than collecting erosion bridge measurements, technical challenges related to the need for ground control networks and image processing requirements must be addressed before this technique could be applied effectively to large landscapes.

High Resolution Marine Magnetic Survey of Shallow Water Littoral Area

Science.gov (United States)

Ginzburg, Boris; Cohen, Tsuriel Ram; Zafrir, Hovav; Alimi, Roger; Salomonski, Nizan; Sharvit, Jacob

2007-01-01

The purpose of this paper is to present a system developed for detection and accurate mapping of ferro-metallic objects buried below the seabed in shallow waters. The system comprises a precise magnetic gradiometer and navigation subsystem, both installed on a non-magnetic catamaran towed by a low-magnetic interfering boat. In addition we present the results of a marine survey of a near-shore area in the vicinity of Atlit, a town situated on the Mediterranean coast of Israel, about 15 km south of Haifa. The primary purpose of the survey was to search for a Harvard airplane that crashed into the sea in 1960. A magnetic map of the survey area (3.5 km2 on a 0.5 m grid) was created revealing the anomalies at sub-meter accuracy. For each investigated target location a corresponding ferro-metallic item was dug out, one of which turned to be very similar to a part of the crashed airplane. The accuracy of location was confirmed by matching the position of the actual dug artifacts with the magnetic map within a range of ± 1 m, in a water depth of 9 m. PMID:28903191

High Resolution Marine Magnetic Survey of Shallow Water Littoral Area

Directory of Open Access Journals (Sweden)

Jacob Sharvit

2007-09-01

Full Text Available The purpose of this paper is to present a system developed for detection andaccurate mapping of ferro-metallic objects buried below the seabed in shallow waters. Thesystem comprises a precise magnetic gradiometer and navigation subsystem, both installedon a non-magnetic catamaran towed by a low-magnetic interfering boat. In addition wepresent the results of a marine survey of a near-shore area in the vicinity of Atlit, a townsituated on the Mediterranean coast of Israel, about 15 km south of Haifa. The primarypurpose of the survey was to search for a Harvard airplane that crashed into the sea in 1960.A magnetic map of the survey area (3.5 km2 on a 0.5 m grid was created revealing theanomalies at sub-meter accuracy. For each investigated target location a correspondingferro-metallic item was dug out, one of which turned to be very similar to a part of thecrashed airplane. The accuracy of location was confirmed by matching the position of theactual dug artifacts with the magnetic map within a range of ± 1 m, in a water depth of 9 m.

Coupled hydrological and biogeochemical processes controlling variability of nitrogen species in streamflow during autumn in an upland forest

Science.gov (United States)

Sebestyen, Stephen D.; Shanley, James B.; Boyer, Elizabeth W.; Kendall, Carol; Doctor, Daniel H.

2014-01-01

Autumn is a season of dynamic change in forest streams of the northeastern United States due to effects of leaf fall on both hydrology and biogeochemistry. Few studies have explored how interactions of biogeochemical transformations, various nitrogen sources, and catchment flow paths affect stream nitrogen variation during autumn. To provide more information on this critical period, we studied (1) the timing, duration, and magnitude of changes to stream nitrate, dissolved organic nitrogen (DON), and ammonium concentrations; (2) changes in nitrate sources and cycling; and (3) source areas of the landscape that most influence stream nitrogen. We collected samples at higher temporal resolution for a longer duration than typical studies of stream nitrogen during autumn. This sampling scheme encompassed the patterns and extremes that occurred during base flow and stormflow events of autumn. Base flow nitrate concentrations decreased by an order of magnitude from 5.4 to 0.7 µmol L−1 during the week when most leaves fell from deciduous trees. Changes to rates of biogeochemical transformations during autumn base flow explained the low nitrate concentrations; in-stream transformations retained up to 72% of the nitrate that entered a stream reach. A decrease of in-stream nitrification coupled with heterotrophic nitrate cycling were primary factors in the seasonal nitrate decline. The period of low nitrate concentrations ended with a storm event in which stream nitrate concentrations increased by 25-fold. In the ensuing weeks, peak stormflow nitrate concentrations progressively decreased over closely spaced, yet similarly sized events. Most stormflow nitrate originated from nitrification in near-stream areas with occasional, large inputs of unprocessed atmospheric nitrate, which has rarely been reported for nonsnowmelt events. A maximum input of 33% unprocessed atmospheric nitrate to the stream occurred during one event. Large inputs of unprocessed atmospheric nitrate

The Low-Resolution Spectrograph of the Hobby-Eberly Telescope. II. Observations of Quasar Candidates from the Sloan Digital Sky Survey

International Nuclear Information System (INIS)

Schneider, D. P.; Hill, Gary J.; Fan, X.; Ramsey, L. W.; MacQueen, P. J.; Weedman, D. W.; Booth, J. A.; Eracleous, M.; Gunn, J. E.; Lupton, R. H.

2000-01-01

This paper describes spectra of quasar candidates acquired during the commissioning phase of the Low-Resolution Spectrograph of the Hobby-Eberly Telescope. The objects were identified as possible quasars from multicolor image data from the Sloan Digital Sky Survey. The 10 sources had typical r' magnitudes of 19-20, except for one extremely red object with r ' ≅23. The data, obtained with exposure times between 10 and 25 minutes, reveal that the spectra of four candidates are essentially featureless and are not quasars, five are quasars with redshifts between 2.92 and 4.15 (including one broad absorption line quasar), and the red source is a very late M star or early L dwarf. (c) (c) 2000. The Astronomical Society of the Pacific

Constructing a WISE High Resolution Galaxy Atlas

Science.gov (United States)

Jarrett, T. H.; Masci, F.; Tsai, C. W.; Petty, S.; Cluver, M.; Assef, Roberto J.; Benford, D.; Blain, A.; Bridge, C.; Donoso, E.;

Carbon and Nitrogen in the Lower Basin of the Paraíba do Sul River, Southeastern Brazil: Element fluxes and biogeochemical processes

Directory of Open Access Journals (Sweden)

Luiz Antonio Martinelli

2011-08-01

Full Text Available The study was conducted in the lower basin of the Paraíba do Sul River (PSR, in which 57,000 km2 of the basin is located in the Brazilian states of São Paulo, Minas Gerais and Rio de Janeiro. We proposed to identify the main sources of C and N fluxes in the PSR waters, to evaluate biogeochemical processes in the watershed, and to estimate C and N riverine loads to the Atlantic Ocean in the context of the sugarcane plantation expansion for ethanol production. Riverine water samples were collected at seven stations along 12 months. Physicochemical and limnological parameters, as well as discharge, were measured together with organic and inorganic C and N species in the dissolved and suspended particulate material. C and N concentrations in bed fluvial sediments, and suspended particulate material were measured, and their elemental ([C:N]a and isotopic (δ13C compositions were compared with the [C:N]a and δ13C of the following sources: riparian soils, insular flooded soils, aquatic macrophytes, phytoplankton, pasture grass, sugarcane, sugarcane byproducts, and forest litterfall. Temporal patterns in the physicochemical and limnological environment were correlated to discharge. It also was observed that sugar cane production can increase riverine C and N fluxes. Riparian soils inputs were larger than insular soils, which was likely to act as a biogeochemical barrier. Effects of the macrophytes on riverine C and N were unclear, as well as urban sewage disposal effects. Although the PSR loads represented a very small percentage of the fluvial input to global biogeochemical cycles, we suggest that this and other medium sized watersheds in Eastern and Southeastern South America can be significant contributors to the continental biogeochemical riverine loads to the ocean, if their loads are considered together.

Dynamic modeling of nitrogen losses in river networks unravels the coupled effects of hydrological and biogeochemical processes

Science.gov (United States)

Alexander, Richard B.; Böhlke, John Karl; Boyer, Elizabeth W.; David, Mark B.; Harvey, Judson W.; Mulholland, Patrick J.; Seitzinger, Sybil P.; Tobias, Craig R.; Tonitto, Christina; Wollheim, Wilfred M.

2009-01-01

The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly

Biogeochemical-Argo: achievements, challenges for the future and potential synergies with other components of ocean observation systems

Science.gov (United States)

Claustre, Hervé; Johnson, Ken

2017-04-01

The recently launched Biogeochemical-Argo (BGC-Argo) program aims at developing a global network of biogeochemical sensors on Argo profiling floats for acquiring long-term high-quality time-series of oceanic properties. BGC-Argo is in particular poised to address a number of challenges in ocean science (e.g. hypoxia, carbon uptake, ocean acidification, biological-carbon pump and phytoplankton communities), topics that are difficult, if not impossible, to address with our present observing assets. Presently six variables are considered as core BGC-Argo variables (O2, NO3, pH, Chla, suspended particles and downwelling irradiance). Historically, BGC-Argo has been initiated through small-scale "showcase" projects progressively scaling up into regional case studies essentially addressing key biological pump-related questions in specific regions (e.g. sub-tropical gyres, North Atlantic, Southern Ocean). Now BGC-Argo is transitioning towards a global and sustained observation system thanks to progressive international coordination of national contributions and to increasingly mature and efficient data management and distribution systems. In this presentation, we will highlight a variety of results derived from BGC-Argo observations and encompassing a wide range of topics related to ocean biogeochemistry. Challenges for the future and long-term sustainability of the system will be addressed in particular with respect to maintaining a high-quality and interoperable dataset over long-term. Part of this can be achieved through a tight interaction with programs (e.g. GOSHIP) and their historical databases, which should constitute a corner stone to assess data quality. Example on the interplay between BGC-Argo and GlodapV2 databases will be particularly exemplified in this context. Furthermore, we will illustrate the potential synergies between synoptically measured surface satellite-quantities and their vertically resolved (BGC-Argo) counterparts into the development of 3D

GALACTICNUCLEUS: A high angular resolution JHKs imaging survey of the Galactic centre. I. Methodology, performance, and near-infrared extinction towards the Galactic centre

Science.gov (United States)

Nogueras-Lara, F.; Gallego-Calvente, A. T.; Dong, H.; Gallego-Cano, E.; Girard, J. H. V.; Hilker, M.; de Zeeuw, P. T.; Feldmeier-Krause, A.; Nishiyama, S.; Najarro, F.; Neumayer, N.; Schödel, R.

2018-03-01

Context. The Galactic centre (GC) is of fundamental astrophysical interest, but existing near-infrared surveys fall short covering it adequately, either in terms of angular resolution, multi-wavelength coverage, or both. Here we introduce the GALACTICNUCLEUS survey, a JHKs imaging survey of the centre of the Milky Way with a 0.2″ angular resolution. Aim. The purpose of this paper is to present the observations of Field 1 of our survey, centred approximately on SgrA* with an approximate size of 7.95' × 3.43'. We describe the observational set-up and data reduction pipeline and discuss the quality of the data. Finally, we present the analysis of the data. Methods: The data were acquired with the near-infrared camera High Acuity Wide field K-band Imager (HAWK-I) at the ESO Very Large Telescope (VLT). Short readout times in combination with the speckle holography algorithm allowed us to produce final images with a stable, Gaussian PSF (point spread function) of 0.2″ FWHM (full width at half maximum). Astrometric calibration is achieved via the VISTA Variables in the Via Lactea (VVV) survey and photometric calibration is based on the SIRIUS/Infrared Survey Facility telescope (IRSF) survey. The quality of the data is assessed by comparison between observations of the same field with different detectors of HAWK-I and at different times. Results: We reach 5σ detection limits of approximately J = 22, H = 21, and Ks = 20. The photometric uncertainties are less than 0.05 at J ≲ 20, H ≲ 17, and Ks ≲ 16. We can distinguish five stellar populations in the colour-magnitude diagrams; three of them appear to belong to foreground spiral arms, and the other two correspond to high- and low-extinction star groups at the GC. We use our data to analyse the near-infrared extinction curve and find some evidence for a possible difference between the extinction index between J - H and H - Ks. However, we conclude that it can be described very well by a power law with an index of

EMODnet High Resolution Seabed Mapping - further developing a high resolution digital bathymetry for European seas

Science.gov (United States)

Schaap, D.; Schmitt, T.

2017-12-01

Access to marine data is a key issue for the EU Marine Strategy Framework Directive and the EU Marine Knowledge 2020 agenda and includes the European Marine Observation and Data Network (EMODnet) initiative. EMODnet aims at assembling European marine data, data products and metadata from diverse sources in a uniform way. The EMODnet Bathymetry project has developed Digital Terrain Models (DTM) for the European seas. These have been produced from survey and aggregated data sets that are indexed with metadata by adopting the SeaDataNet Catalogue services. SeaDataNet is a network of major oceanographic data centres around the European seas that manage, operate and further develop a pan-European infrastructure for marine and ocean data management. The latest EMODnet Bathymetry DTM release has a grid resolution of 1/8 arcminute and covers all European sea regions. Use has been made of circa 7800 gathered survey datasets and composite DTMs. Catalogues and the EMODnet DTM are published at the dedicated EMODnet Bathymetry portal including a versatile DTM viewing and downloading service. End December 2016 the Bathymetry project has been succeeded by EMODnet High Resolution Seabed Mapping (HRSM). This continues gathering of bathymetric in-situ data sets with extra efforts for near coastal waters and coastal zones. In addition Satellite Derived Bathymetry data are included to fill gaps in coverage of the coastal zones. The extra data and composite DTMs will increase the coverage of the European seas and its coastlines, and provide input for producing an EMODnet DTM with a common resolution of 1/16 arc minutes. The Bathymetry Viewing and Download service will be upgraded to provide a multi-resolution map and including 3D viewing. The higher resolution DTMs will also be used to determine best-estimates of the European coastline for a range of tidal levels (HAT, MHW, MSL, Chart Datum, LAT), thereby making use of a tidal model for Europe. Extra challenges will be `moving to the

The VLA Sky Survey

Science.gov (United States)

Lacy, Mark; VLASS Survey Team, VLASS Survey Science Group

2018-01-01

The VLA Sky Survey (VLASS), which began in September 2017, is a seven year project to image the entire sky north of Declination -40 degrees in three epochs. The survey is being carried out in I,Q and U polarization at a frequency of 2-4GHz, and a resolution of 2.5 arcseconds, with each epoch being separated by 32 months. Raw data from the survey, along with basic "quicklook" images are made freely available shortly after observation. Within a few months, NRAO will begin making available further basic data products, including refined images and source lists. In this talk I shall describe the science goals and methodology of the survey, the current survey status, and some early results, along with plans for collaborations with external groups to produce enhanced, high level data products.

The Seasonal Cycle of Carbon in the Southern Pacific Ocean Observed from Biogeochemical Profiling Floats

Science.gov (United States)

Sarmiento, J. L.; Gray, A. R.; Johnson, K. S.; Carter, B.; Riser, S.; Talley, L. D.; Williams, N. L.

2016-02-01

The Southern Ocean is thought to play an important role in the ocean-atmosphere exchange of carbon dioxide and the uptake of anthropogenic carbon dioxide. However, the total number of observations of the carbonate system in this region is small and heavily biased towards the summer. Here we present 1.5 years of biogeochemical measurements, including pH, oxygen, and nitrate, collected by 11 autonomous profiling floats deployed in the Pacific sector of the Southern Ocean in April 2014. These floats sampled a variety of oceanographic regimes ranging from the seasonally ice-covered zone to the subtropical gyre. Using an algorithm trained with bottle measurements, alkalinity is estimated from salinity, temperature, and oxygen and then used together with the measured pH to calculate total carbon dioxide and pCO2 in the upper 1500 dbar. The seasonal cycle in the biogeochemical quantities is examined, and the factors governing pCO2 in the surface waters are analyzed. The mechanisms driving the seasonal cycle of carbon are further investigated by computing budgets of heat, carbon, and nitrogen in the mixed layer. Comparing the different regimes sampled by the floats demonstrates the complex and variable nature of the carbon cycle in the Southern Ocean.

Enhanced biogeochemical cycling and subsequent reduction of hydraulic conductivity associated with soil-layer interfaces in the vadose zone

Science.gov (United States)

Hansen, David J.; McGuire, Jennifer T.; Mohanty, Binayak P.

2013-01-01

Biogeochemical dynamics in the vadose zone are poorly understood due to the transient nature of chemical and hydrologic conditions, but are nonetheless critical to understanding chemical fate and transport. This study explored the effects of a soil layer on linked geochemical, hydrological, and microbiological processes. Three laboratory soil columns were constructed: a homogenized medium-grained sand, a homogenized organic-rich loam, and a sand-over-loam layered column. Upward and downward infiltration of water was evaluated during experiments to simulate rising water table and rainfall events respectively. In-situ collocated probes measured soil water content, matric potential, and Eh while water samples collected from the same locations were analyzed for Br−, Cl−, NO3−, SO42−, NH4+, Fe2+, and total sulfide. Compared to homogenous columns, the presence of a soil layer altered the biogeochemistry and water flow of the system considerably. Enhanced biogeochemical cycling was observed in the layered column over the texturally homogeneous soil columns. Enumerations of iron and sulfate reducing bacteria showed 1-2 orders of magnitude greater community numbers in the layered column. Mineral and soil aggregate composites were most abundant near the soil-layer interface; the presence of which, likely contributed to an observed order-of-magnitude decrease in hydraulic conductivity. These findings show that quantifying coupled hydrologic-biogeochemical processes occurring at small-scale soil interfaces is critical to accurately describing and predicting chemical changes at the larger system scale. Findings also provide justification for considering soil layering in contaminant fate and transport models because of its potential to increase biodegradation and/or slow the rate of transport of contaminants. PMID:22031578

Quantifying the Variability of CH4 Emissions from Pan-Arctic Lakes with Lake Biogeochemical and Landscape Evolution Models

Science.gov (United States)

Tan, Z.; Zhuang, Q.

2014-12-01

Recent studies in the arctic and subarctic show that CH4 emissions from pan-arctic lakes are playing much more significant roles in the regional carbon cycling than previously estimated. Permafrost thawing due to pronounced warming at northern high latitudes affects lake morphology, changing its CH4 emissions. Thermokarst can enlarge the extent of artic lakes, exposing stable ancient carbon buried in the permafrost zone for degradation and changing a previously known carbon sink to a large carbon source. In some areas, the thawing of subarctic discontinuous and isolated permafrost can diminish thermokarst lakes. To date, few models have considered these important hydrological and biogeochemical processes to provide adequate estimation of CH4 emissions from these lakes. To fill this gap, we have developed a process-based climate-sensitive lake biogeochemical model and a landscape evolution model, which have been applied to quantify the state and variability of CH4 emissions from this freshwater system. Site-level experiments show the models are capable to capture the spatial and temporal variability of CH4 emissions from lakes across Siberia and Alaska. With the lake biogeochemical model solely, we estimate that the magnitude of CH4 emissions from lakes is 13.2 Tg yr-1 in the north of 60 ºN at present, which is on the same order of CH4 emissions from northern high-latitude wetlands. The maximum increment is 11.8 Tg CH4 yr-1 by the end of the 21st century when the worst warming scenario is assumed. We expect the landscape evolution model will improve the existing estimates.

The significance of biogeochemical cycles of macro- and microelements in connection with man-made evolution of the living matter

International Nuclear Information System (INIS)

Ermakov, V.V.

2008-01-01

Biogeochemistry as an integrated science studying the elemental composition of the living matter and its role in migration, transformation, accumulation of chemical elements and their compounds in the biosphere, has again become the leading scientific branch highlighting the man-made evolution of the planet and the pathways of interaction between the man and environment. Nowadays the central problem of biogeochemistry as science about the biosphere is that of pollution of the different taxons of the biosphere. In the most case man-made factors effect on the different organisms and the flow of chemical elements changing their local, regional and global biogeochemical cycles. The concept of balance of O 2 , CO 2 and H 2 O as general condition of the sustained development of the biosphere is considered. The questions of biological rhythms, appearance of microelementhoses and modern systemic biogeochemical methodology of assessment of taxons of the biosphere are considered too

The ESASSI-08 cruise in the South Scotia Ridge region: preliminary analysis of hydrodynamic and biogeochemical data

Science.gov (United States)

Gomis, D.; Flexas, M. M.; Palmer, M.; Jordà, G.; Orsi, A. H.; Yvon-Lewis, S. A.

2009-04-01

The ESASSI-08 oceanographic cruise carried out in January 2008 was the major milestone of ESASSI, the Spanish component of SASSI (a core project of the International Polar Year devoted to study the shelf-slope exchanges in different locations of Antarctica). The sampling strategy of the cruise consisted of 11 full-depth CTD/ADCP sections across the northern and southern slope of the South Scotia Ridge (SSR), between Elephant and Orkney Islands. The sections extend from shelf waters to open sea and the profiles were gathered at an unprecedented spatial resolution over the slope (about 2 nm). Water samples for chemical and biological analysis were also collected at each station; the analyzed parameters include trace gases (CFCs), oxygen isotopes, carbon-related parameters, and nutrients. In this presentation we show the overall distribution of the main variables across the different sections. Namely, we present: a water mass analysis (in terms of potential temperature, salinity and neutral density), estimates of velocities and fluxes across different transects and distributions of biogeochemical parameters. The ultimate aims of the ESASSI project are: 1) to elucidate the fate of the ASF when it enters the SSR from the Weddell Sea; 2) to estimate the shelf-slope exchanges for different parameters; and 3) to quantify the importance of the ventilation associated with intermediate waters flowing over the SSR with respect to the ventilation associated with bottom waters that are blocked by the SSR and flow around the Orkney Plateau.

Inference and Biogeochemical Response of Vertical Velocities inside a Mode Water Eddy

Science.gov (United States)

Barceló-Llull, B.; Pallas Sanz, E.; Sangrà, P.

2016-02-01

With the aim to study the modulation of the biogeochemical fluxes by the ageostrophic secondary circulation in anticyclonic mesoscale eddies, a typical eddy of the Canary Eddy Corridor was interdisciplinary surveyed on September 2014 in the framework of the PUMP project. The eddy was elliptical shaped, 4 month old, 110 km diameter and 400 m depth. It was an intrathermocline type often also referred as mode water eddy type. We inferred the mesoscale vertical velocity field resolving a generalized omega equation from the 3D density and ADCP velocity fields of a five-day sampled CTD-SeaSoar regular grid centred on the eddy. The grid transects where 10 nautical miles apart. Although complex, in average, the inferred omega velocity field (hereafter w) shows a dipolar structure with downwelling velocities upstream of the propagation path (west) and upwelling velocities downstream. The w at the eddy center was zero and maximum values were located at the periphery attaining ca. 6 m day-1. Coinciding with the occurrence of the vertical velocities cells a noticeable enhancement of phytoplankton biomass was observed at the eddy periphery respect to the far field. A corresponding upward diapycnal flux of nutrients was also observed at the periphery. As minimum velocities where reached at the eddy center, lineal Ekman pumping mechanism was discarded. Minimum values of phytoplankton biomass where also observed at the eddy center. The possible mechanisms for such dipolar w cell are still being investigated, but an analysis of the generalized omega equation forcing terms suggest that it may be a combination of horizontal deformation and advection of vorticity by the ageostrophic current (related to nonlinear Ekman pumping). As expected for Trades, the wind was rather constant and uniform with a speed of ca. 5 m s-1. Diagnosed nonlinear Ekman pumping leaded also to a dipolar cell that mirrors the omega w dipolar cell.

Compensatory vapor loss and biogeochemical attenuation along flowpaths mute the water resources impacts of insect-induced forest mortality

Science.gov (United States)

Biederman, J. A.; Brooks, P. D.; Harpold, A. A.; Gochis, D. J.; Ewers, B. E.; Reed, D. E.; Gutmann, E. D.

2013-12-01

Forested montane catchments are critical to the amount and quality of downstream water resources. In western North America more than 60 million people rely on mountain precipitation, and water managers face uncertain response to an unprecedented forest die-off from mountain pine beetle (MPB) infestation. Reduced snow interception and transpiration are expected to increase streamflow, while increased organic matter decay is expected to increase biogeochemical stream fluxes. Tree- to plot-scale observations have documented some of the expected changes, but there has been little significant change to streamflow or water quality at the larger scales relevant to water resources. A critical gap exists in our understanding of why tree-scale process changes have not led to the expected, large-scale increases in streamflow and biogeochemical fluxes. We address this knowledge gap with observations of water and biogeochemical fluxes at nested spatial scales including tree, hillslope, and catchments from 3 to 700 ha with more than 75% mortality. Catchment discharge showed reduced water yield consistent with co-located eddy covariance observations showing increased vapor losses following MPB. Stable water isotopes showed progressive kinetic fractionation (i.e. unsaturated transition layer above the evaporating surface) in snowpack, soil water and streams indicating greater abiotic evaporation from multiple water sources offsetting decreased interception and transpiration. In the 3rd to 5th years following MPB forest mortality, soil water DOC and DON were similar beneath killed and healthy trees, but concentrations were elevated 2-10 times in groundwater of MPB-impacted sites as compared to unimpacted. Stream water DOC and DON were about 3 times as large during snowmelt runoff in ephemeral zero-order channels of MPB-impacted sites compared to unimpacted. Processing in the headwater streams of MPB-impacted forests rapidly attenuated dissolved organic matter. From the MPB

Gaia , an all sky astrometric and photometric survey

International Nuclear Information System (INIS)

Carrasco, J.M.

2017-01-01

Gaia space mission includes a low resolution spectroscopic instrument to classify and parametrize the observed sources. Gaia is a full-sky unbiased survey down to about 20th magnitude. The scanning law yields a rather uniform coverage of the sky over the full mission. The data reduction is a global one over the full mission. Both sky coverage and data reduction strategy ensure an unprecedented all-sky homogeneous spectrophotometric survey. Certainly, that survey is of interest for future on-ground and space projects (LSST, PLATO, EUCLID, ...). This work addresses the exploitation of the Gaia spectrophotometry as standard photometry reference through the discussion of the sky coverage, the spectrophotometric precision and the expected uncertainties of the synthetic photometry derived from the low resolution Gaia spectra and photometry.

Deriving forest fire ignition risk with biogeochemical process modelling.

Science.gov (United States)

Eastaugh, C S; Hasenauer, H

2014-05-01

Climate impacts the growth of trees and also affects disturbance regimes such as wildfire frequency. The European Alps have warmed considerably over the past half-century, but incomplete records make it difficult to definitively link alpine wildfire to climate change. Complicating this is the influence of forest composition and fuel loading on fire ignition risk, which is not considered by purely meteorological risk indices. Biogeochemical forest growth models track several variables that may be used as proxies for fire ignition risk. This study assesses the usefulness of the ecophysiological model BIOME-BGC's 'soil water' and 'labile litter carbon' variables in predicting fire ignition. A brief application case examines historic fire occurrence trends over pre-defined regions of Austria from 1960 to 2008. Results show that summer fire ignition risk is largely a function of low soil moisture, while winter fire ignitions are linked to the mass of volatile litter and atmospheric dryness.

Deriving forest fire ignition risk with biogeochemical process modelling☆

Science.gov (United States)

Eastaugh, C.S.; Hasenauer, H.

2014-01-01

Climate impacts the growth of trees and also affects disturbance regimes such as wildfire frequency. The European Alps have warmed considerably over the past half-century, but incomplete records make it difficult to definitively link alpine wildfire to climate change. Complicating this is the influence of forest composition and fuel loading on fire ignition risk, which is not considered by purely meteorological risk indices. Biogeochemical forest growth models track several variables that may be used as proxies for fire ignition risk. This study assesses the usefulness of the ecophysiological model BIOME-BGC's ‘soil water’ and ‘labile litter carbon’ variables in predicting fire ignition. A brief application case examines historic fire occurrence trends over pre-defined regions of Austria from 1960 to 2008. Results show that summer fire ignition risk is largely a function of low soil moisture, while winter fire ignitions are linked to the mass of volatile litter and atmospheric dryness. PMID:26109905

Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach

NARCIS (Netherlands)

Le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J.

2015-01-01

Vertical and lateral transports are of importance in continental shelf systems such as the North Sea andplay a major role in the processing of organic matter. We investigated the biogeochemical consequencesof these transports on particulate organic matter at the molecular level in the southern North

Biogeochemical and Optical Analysis of Coastal DOM for Satellite Retrieval of Terrigenous DOM in the U.S. Middle Atlantic Bight

Science.gov (United States)

Mannino, A.; Dyda, R. Y.; Hernes, P. J.; Hooker, Stan; Hyde, Kim; Novak, Mike

2012-01-01

Estuaries and coastal ocean waters experience a high degree of variability in the composition and concentration of particulate and dissolved organic matter (DOM) as a consequence of riverine/estuarine fluxes of terrigenous DOM, sediments, detritus and nutrients into coastal waters and associated phytoplankton blooms. Our approach integrates biogeochemical measurements (elemental content, molecular analyses), optical properties (absorption) and remote sensing to examine terrestrial DOM contributions into the U.S. Middle Atlantic Bight (MAB). We measured lignin phenol composition, DOC and CDOM absorption within the Chesapeake and Delaware Bay mouths, plumes and adjacent coastal ocean waters to derive empirical relationships between CDOM and biogeochemical measurements for satellite remote sensing application. Lignin ranged from 0.03 to 6.6 ug/L between estuarine and outer shelf waters. Our results demonstrate that satellite-derived CDOM is useful as a tracer of terrigenous DOM in the coastal ocean

The roles of resuspension, diffusion and biogeochemical processes on oxygen dynamics offshore of the Rhône River, France: a numerical modeling study

Science.gov (United States)

Moriarty, Julia M.; Harris, Courtney K.; Fennel, Katja; Friedrichs, Marjorie A. M.; Xu, Kehui; Rabouille, Christophe

2017-04-01

Observations indicate that resuspension and associated fluxes of organic material and porewater between the seabed and overlying water can alter biogeochemical dynamics in some environments, but measuring the role of sediment processes on oxygen and nutrient dynamics is challenging. A modeling approach offers a means of quantifying these fluxes for a range of conditions, but models have typically relied on simplifying assumptions regarding seabed-water-column interactions. Thus, to evaluate the role of resuspension on biogeochemical dynamics, we developed a coupled hydrodynamic, sediment transport, and biogeochemical model (HydroBioSed) within the Regional Ocean Modeling System (ROMS). This coupled model accounts for processes including the storage of particulate organic matter (POM) and dissolved nutrients within the seabed; fluxes of this material between the seabed and the water column via erosion, deposition, and diffusion at the sediment-water interface; and biogeochemical reactions within the seabed. A one-dimensional version of HydroBioSed was then implemented for the Rhône subaqueous delta in France. To isolate the role of resuspension on biogeochemical dynamics, this model implementation was run for a 2-month period that included three resuspension events; also, the supply of organic matter, oxygen, and nutrients to the model was held constant in time. Consistent with time series observations from the Rhône Delta, model results showed that erosion increased the diffusive flux of oxygen into the seabed by increasing the vertical gradient of oxygen at the seabed-water interface. This enhanced supply of oxygen to the seabed, as well as resuspension-induced increases in ammonium availability in surficial sediments, allowed seabed oxygen consumption to increase via nitrification. This increase in nitrification compensated for the decrease in seabed oxygen consumption due to aerobic remineralization that occurred as organic matter was entrained into the water

Geoid of Nepal from airborne gravity survey

DEFF Research Database (Denmark)

Forsberg, René; Olesen, Arne Vestergaard; Einarsson, Indriði

2011-01-01

An airborne gravity survey of Nepal was carried out December 2010 in a cooperation between DTU-Space, Nepal Survey Department, and NGA, USA. The entire country was flown with survey lines spaced 6 nm with a King Air aircraft, with a varying flight altitude from 4 to 10 km. The survey operations...... as well as recent GPS-heights of Mt. Everest. The new airborne data also provide an independent validation of GOCE gravity field results at the local ~100 km resolution scale....

Using a Hydrodynamic and Biogeochemical Model to Investigate the Effects of Nutrient Loading from a Wastewater Treatment Plant into Lake Michigan

Science.gov (United States)

Khazaei, B.; Bravo, H.; Bootsma, H.

2017-12-01

There is clear evidence that excessive nutrient, in particular phosphorus (P), loading into Lake Michigan has produced significant problems, such as algal blooms, hypoxia, and reduced water quality. Addressing those problems requires understanding the transport and fate of P in the lake. The dominance of mixing and dispersion processes on the P transport has been demonstrated, yet recent research has shown the remarkable influence of dreissenid mussels and Cladophora on water clarity and the P budget. Since mussels and Cladophora tend to concentrate near the coastlines, nearshore-offshore P exchange is of a big importance. In this research, a computer model was developed to simulate the P cycle by incorporating the biogeochemical processes relevant to the transport of P into a 3D high-resolution hydrodynamic model. The near-bottom biogeochemical model consists of three linked modules: Cladophora, mussel, and sediment storage modules. The model was applied to the Milwaukee Metropolitan Sewerage District South Shore Wastewater Treatment Plant, between June and October of 2013 and 2015, as a case study. The plant outfall introduces a point source of P into the study domain—the nearshore zone of Lake Michigan adjacent to Milwaukee County. The model was validated against field observations of water temperature, dissolved phosphorus (DP), particulate phosphorus (PP), Cladophora biomass, and P content. The model simulations showed reasonably good agreement with field measurements. Model results showed a) different temporal patterns in 2013 and 2015, b) a larger range of fluctuations in DP than that in PP, and c) that the effects of mussels and Cladophora could explain the differences in patterns and ranges. PP concentrations showed more frequent spikes of concentration in 2013 due to resuspension events during that year because of stronger winds. The model is being applied as a management tool to test scenarios of nutrient loading to determine effluent P limits for the

Electric currents couple spatially separated biogeochemical processes in marine sediment

DEFF Research Database (Denmark)

Nielsen, Lars Peter; Risgaard-Petersen, Nils; Fossing, Henrik

2010-01-01

Some bacteria are capable of extracellular electron transfer, thereby enabling them to use electron acceptors and donors without direct cell contact 1, 2, 3, 4 . Beyond the micrometre scale, however, no firm evidence has previously existed that spatially segregated biogeochemical processes can...... be coupled by electric currents in nature. Here we provide evidence that electric currents running through defaunated sediment couple oxygen consumption at the sediment surface to oxidation of hydrogen sulphide and organic carbon deep within the sediment. Altering the oxygen concentration in the sea water...... in the sediment was driven by electrons conducted from the anoxic zone. A distinct pH peak in the oxic zone could be explained by electrochemical oxygen reduction, but not by any conventional sets of aerobic sediment processes. We suggest that the electric current was conducted by bacterial nanowires combined...

The HI/OH/Recombination line survey of the inner Milky Way (THOR). Survey overview and data release 1

Science.gov (United States)

Beuther, H.; Bihr, S.; Rugel, M.; Johnston, K.; Wang, Y.; Walter, F.; Brunthaler, A.; Walsh, A. J.; Ott, J.; Stil, J.; Henning, Th.; Schierhuber, T.; Kainulainen, J.; Heyer, M.; Goldsmith, P. F.; Anderson, L. D.; Longmore, S. N.; Klessen, R. S.; Glover, S. C. O.; Urquhart, J. S.; Plume, R.; Ragan, S. E.; Schneider, N.; McClure-Griffiths, N. M.; Menten, K. M.; Smith, R.; Roy, N.; Shanahan, R.; Nguyen-Luong, Q.; Bigiel, F.

2016-10-01

Context. The past decade has witnessed a large number of Galactic plane surveys at angular resolutions below 20''. However, no comparable high-resolution survey exists at long radio wavelengths around 21 cm in line and continuum emission. Aims: We remedy this situation by studying the northern Galactic plane at 20'' resolution in emission of atomic, molecular, and ionized gas. Methods: Employing the Karl G. Jansky Very Large Array (VLA) in the C-array configuration and a large program, we observe the HI 21 cm line, four OH lines, nineteen Hnα radio recombination lines as well as the continuum emission from 1 to 2 GHz in full polarization over a large part of the first Galactic quadrant. Results: Covering Galactic longitudes from 14.5 to 67.4 deg and latitudes between ± 1.25 deg, we image all of these lines and the continuum at 20'' resolution. These data allow us to study the various components of the interstellar medium (ISM): from the atomic phase, traced by the HI line, to the molecular phase, observed by the OH transitions, to the ionized medium, revealed by the cm continuum and the Hnα radio recombination lines. Furthermore, the polarized continuum emission enables magnetic field studies. In this overview paper, we discuss the survey outline and present the first data release as well as early results from the different datasets. We now release the first half of the survey; the second half will follow later after the ongoing data processing has been completed. The data in fits format (continuum images and line data cubes) can be accessed through the project web-page. Conclusions: The HI/OH/Recombination line survey of the Milky Way (THOR) opens a new window to the different parts of the ISM. It enables detailed studies of molecular cloud formation, conversion of atomic to molecular gas, and feedback from Hii regions as well as the magnetic field in the Milky Way. It is highly complementary to other surveys of our Galaxy, and comparing the different datasets

Biogeochemical consequences of vertical and lateral transport of particulate organic matter in the southern North Sea: A multiproxy approach

NARCIS (Netherlands)

le Guitton, M.; Soetaert, K.; Sinninghe Damsté, J.S.; Middelburg, J.J.

2015-01-01

Vertical and lateral transports are of importance in continental shelf systems such as the North Sea and play a major role in the processing of organic matter. We investigated the biogeochemical consequences of these transports on particulate organic matter at the molecular level in the southern

Study of the seasonal cycle of the biogeochemical processes in the Ligurian Sea using a 1D interdisciplinary model

NARCIS (Netherlands)

Raick, C.; Delhez, E.J.M.; Soetaert, K.E.R.; Grégoire, M.

2005-01-01

A one-dimensional coupled physical–biogeochemical model has been built to study the pelagic food web of the Ligurian Sea (NW Mediterranean Sea). The physical model is the turbulent closure model (version 1D) developed at the GeoHydrodynamics and Environmental Laboratory (GHER) of the University of

Biogeochemical Cycles for Combining Chemical Knowledge and ESD Issues in Greek Secondary Schools Part I: Designing the Didactic Materials

Science.gov (United States)

Koutalidi, Sophia; Scoullos, Michael

2016-01-01

Biogeochemical cycles support all anthropogenic activities and are affected by them, therefore they are intricately interlinked with global environmental and socioeconomic issues. Elements of these cycles that are already included in the science/chemical curriculum and textbooks intended for formal education in Greek secondary schools were…

What can high frequency data tell us about hydrological and biogeochemical processes in a permafrost-underlain watershed that we do not already know?

Science.gov (United States)

Carey, S. K.; Shatilla, N. J.; Tang, W.

2017-12-01

Permafrost and frozen ground play a key role in the delivery of water and solutes from the landscape to the stream, and in biogeochemical cycling by acting as a cold season or semi-permanent aquitard. Conceptual models of permafrost hydrology have been well defined for over 40 years, yet renewed interest in the face of global climate change and rapid degradation of frozen ground has provided an opportunity to revisit previous paradigms. At the same time, new instruments and techniques to understand coupled hydrological and biogeochemical processes have emerged, providing a more nuanced view of northern systems. High-frequency sub-hourly measures of flows, water quality and biogeochemical parameters such as salinity and chromophoric dissolved organic matter (CDOM), along with eddy covariance systems provide considerable data, yet using this data to reveal new process information remains challenging. In this presentation, multi-year high frequency data sets of water, solute and carbon fluxes from Granger Creek, an instrumented alpine watershed with discontinuous permafrost within the Wolf Creek Research Basin, Yukon Territory, Canada, will be shown. While several decades of hydrometric and geochemical data exist for Granger Creek, inter-annual variability is considerable and makes evaluating long-term trends difficult. Insights derived from high-frequency sub-hourly salinity, CDOM and flow over recent years reveal that hysteresis loops among variables can be used to assess changing connectivity and flow paths as both magnitude and direction of loops can be used to infer landscape-scale linkages. These patterns highlight spatial connections among landscape units not previously observed, and identify periods when hydrological and biogeochemical cycles are coupled. Evaluation of these patterns at the headwater scale provides alternate hypotheses for how permafrost landscapes will respond to a changing climate.

Spatial distributions of biogeochemical reactions in freshwater-saltwater mixing zones of sandy beach aquifers

Science.gov (United States)

Kim, K. H.; Michael, H. A.; Ullman, W. J.; Cai, W. J.

2017-12-01

Beach aquifers host biogeochemically dynamic mixing zones between fresh and saline groundwaters of contrasting origins, histories, and compositions. Seawater, driven up the beachface by waves and tides, infiltrates into the sand and meets the seaward-discharging fresh groundwater, creating and maintaining a highly reactive intertidal circulation cell well-defined by salinity. Seawater supplies oxygen and reactive carbon to the circulation cell, supporting biogeochemical reactions within the cell that transform and attenuate dissolved nutrient fluxes from terrestrial sources. We investigated the spatial distribution of chemical reaction zones within the intertidal circulation cell at Cape Shores, Lewes, Delaware. Porewater samples were collected from multi-level wells along a beach-perpendicular transect. Samples were analyzed for particulate carbon and reactive solutes, and incubated to obtain rates of oxic respiration and denitrification. High rates of oxic respiration were observed higher on the beach, in the landward freshwater-saline water mixing zone, where dissolved oxygen availability was high. Denitrification was dominant in lower areas of the beach, below the intertidal discharge point. High respiration rates did not correlate with particulate carbon concentrations entrained within porewater, suggesting that dissolved organic carbon or immobile particulate carbon trapped within the sediment can contribute to and alter bulk reactivity. A better understanding of the sources and sinks of carbon within the beach will improve our ability to predict nutrient fluxes to estuaries and oceans, aiding the management of coastal environments and ecosystems.

The Southern Ocean biogeochemical divide.

Science.gov (United States)

Marinov, I; Gnanadesikan, A; Toggweiler, J R; Sarmiento, J L

2006-06-22

Modelling studies have demonstrated that the nutrient and carbon cycles in the Southern Ocean play a central role in setting the air-sea balance of CO(2) and global biological production. Box model studies first pointed out that an increase in nutrient utilization in the high latitudes results in a strong decrease in the atmospheric carbon dioxide partial pressure (pCO2). This early research led to two important ideas: high latitude regions are more important in determining atmospheric pCO2 than low latitudes, despite their much smaller area, and nutrient utilization and atmospheric pCO2 are tightly linked. Subsequent general circulation model simulations show that the Southern Ocean is the most important high latitude region in controlling pre-industrial atmospheric CO(2) because it serves as a lid to a larger volume of the deep ocean. Other studies point out the crucial role of the Southern Ocean in the uptake and storage of anthropogenic carbon dioxide and in controlling global biological production. Here we probe the system to determine whether certain regions of the Southern Ocean are more critical than others for air-sea CO(2) balance and the biological export production, by increasing surface nutrient drawdown in an ocean general circulation model. We demonstrate that atmospheric CO(2) and global biological export production are controlled by different regions of the Southern Ocean. The air-sea balance of carbon dioxide is controlled mainly by the biological pump and circulation in the Antarctic deep-water formation region, whereas global export production is controlled mainly by the biological pump and circulation in the Subantarctic intermediate and mode water formation region. The existence of this biogeochemical divide separating the Antarctic from the Subantarctic suggests that it may be possible for climate change or human intervention to modify one of these without greatly altering the other.

Bio-optical profiling floats as new observational tools for biogeochemical and ecosystem studies: Potential synergies with ocean color remote sensing

Energy Technology Data Exchange (ETDEWEB)

Claustre, H.; Bishop, J.; Boss, E.; Bernard, S.; Berthon, J.-F.; Coatanoan, C.; Johnson, K.; Lotiker, A.; Ulloa, O.; Perry, M.J.; D' Ortenzio, F.; D' andon, O.H.F.; Uitz, J.

2009-10-01

Profiling floats now represent a mature technology. In parallel with their emergence, the field of miniature, low power bio-optical and biogeochemical sensors is rapidly evolving. Over recent years, the bio-geochemical and bio-optical community has begun to benefit from the increase in observational capacities by developing profiling floats that allow the measurement of key biooptical variables and subsequent products of biogeochemical and ecosystem relevance like Chlorophyll a (Chla), optical backscattering or attenuation coefficients which are proxies of Particulate Organic Carbon (POC), Colored Dissolved Organic Matter (CDOM). Thanks to recent algorithmic improvements, new bio-optical variables such as backscattering coefficient or absorption by CDOM, at present can also be extracted from space observations of ocean color. In the future, an intensification of in situ measurements by bio-optical profiling floats would permit the elaboration of unique 3D/4D bio-optical climatologies, linking surface (remotely detected) properties to their vertical distribution (measured by autonomous platforms), with which key questions in the role of the ocean in climate could be addressed. In this context, the objective of the IOCCG (International Ocean Color Coordinating Group) BIO-Argo working group is to elaborate recommendations in view of a future use of bio-optical profiling floats as part of a network that would include a global array that could be 'Argo-relevant', and specific arrays that would have more focused objectives or regional targets. The overall network, realizing true multi-scale sustained observations of global marine biogeochemistry and biooptics, should satisfy the requirements for validation of ocean color remote sensing as well as the needs of a wider community investigating the impact of global change on biogeochemical cycles and ecosystems. Regarding the global profiling float array, the recommendation is that Chla as well as POC should be the

Precision cosmology with time delay lenses: high resolution imaging requirements

Energy Technology Data Exchange (ETDEWEB)

Meng, Xiao-Lei; Liao, Kai [Department of Astronomy, Beijing Normal University, 19 Xinjiekouwai Street, Beijing, 100875 (China); Treu, Tommaso; Agnello, Adriano [Department of Physics, University of California, Broida Hall, Santa Barbara, CA 93106 (United States); Auger, Matthew W. [Institute of Astronomy, University of Cambridge, Madingley Road, Cambridge CB3 0HA (United Kingdom); Marshall, Philip J., E-mail: xlmeng919@gmail.com, E-mail: tt@astro.ucla.edu, E-mail: aagnello@physics.ucsb.edu, E-mail: mauger@ast.cam.ac.uk, E-mail: liaokai@mail.bnu.edu.cn, E-mail: dr.phil.marshall@gmail.com [Kavli Institute for Particle Astrophysics and Cosmology, Stanford University, 452 Lomita Mall, Stanford, CA 94305 (United States)

2015-09-01

Lens time delays are a powerful probe of cosmology, provided that the gravitational potential of the main deflector can be modeled with sufficient precision. Recent work has shown that this can be achieved by detailed modeling of the host galaxies of lensed quasars, which appear as ''Einstein Rings'' in high resolution images. The distortion of these arcs and counter-arcs, as measured over a large number of pixels, provides tight constraints on the difference between the gravitational potential between the quasar image positions, and thus on cosmology in combination with the measured time delay. We carry out a systematic exploration of the high resolution imaging required to exploit the thousands of lensed quasars that will be discovered by current and upcoming surveys with the next decade. Specifically, we simulate realistic lens systems as imaged by the Hubble Space Telescope (HST), James Webb Space Telescope (JWST), and ground based adaptive optics images taken with Keck or the Thirty Meter Telescope (TMT). We compare the performance of these pointed observations with that of images taken by the Euclid (VIS), Wide-Field Infrared Survey Telescope (WFIRST) and Large Synoptic Survey Telescope (LSST) surveys. We use as our metric the precision with which the slope γ' of the total mass density profile ρ{sub tot}∝ r{sup −γ'} for the main deflector can be measured. Ideally, we require that the statistical error on γ' be less than 0.02, such that it is subdominant to other sources of random and systematic uncertainties. We find that survey data will likely have sufficient depth and resolution to meet the target only for the brighter gravitational lens systems, comparable to those discovered by the SDSS survey. For fainter systems, that will be discovered by current and future surveys, targeted follow-up will be required. However, the exposure time required with upcoming facilitites such as JWST, the Keck Next Generation

Precision cosmology with time delay lenses: High resolution imaging requirements

Energy Technology Data Exchange (ETDEWEB)

Meng, Xiao -Lei [Beijing Normal Univ., Beijing (China); Univ. of California, Santa Barbara, CA (United States); Treu, Tommaso [Univ. of California, Santa Barbara, CA (United States); Univ. of California, Los Angeles, CA (United States); Agnello, Adriano [Univ. of California, Santa Barbara, CA (United States); Univ. of California, Los Angeles, CA (United States); Auger, Matthew W. [Univ. of Cambridge, Cambridge (United Kingdom); Liao, Kai [Beijing Normal Univ., Beijing (China); Univ. of California, Santa Barbara, CA (United States); Univ. of California, Los Angeles, CA (United States); Marshall, Philip J. [Stanford Univ., Stanford, CA (United States)

2015-09-28

Lens time delays are a powerful probe of cosmology, provided that the gravitational potential of the main deflector can be modeled with sufficient precision. Recent work has shown that this can be achieved by detailed modeling of the host galaxies of lensed quasars, which appear as ``Einstein Rings'' in high resolution images. The distortion of these arcs and counter-arcs, as measured over a large number of pixels, provides tight constraints on the difference between the gravitational potential between the quasar image positions, and thus on cosmology in combination with the measured time delay. We carry out a systematic exploration of the high resolution imaging required to exploit the thousands of lensed quasars that will be discovered by current and upcoming surveys with the next decade. Specifically, we simulate realistic lens systems as imaged by the Hubble Space Telescope (HST), James Webb Space Telescope (JWST), and ground based adaptive optics images taken with Keck or the Thirty Meter Telescope (TMT). We compare the performance of these pointed observations with that of images taken by the Euclid (VIS), Wide-Field Infrared Survey Telescope (WFIRST) and Large Synoptic Survey Telescope (LSST) surveys. We use as our metric the precision with which the slope γ' of the total mass density profile ρ_tot∝ r–γ' for the main deflector can be measured. Ideally, we require that the statistical error on γ' be less than 0.02, such that it is subdominant to other sources of random and systematic uncertainties. We find that survey data will likely have sufficient depth and resolution to meet the target only for the brighter gravitational lens systems, comparable to those discovered by the SDSS survey. For fainter systems, that will be discovered by current and future surveys, targeted follow-up will be required. Furthermore, the exposure time required with upcoming facilitites such as JWST, the Keck Next Generation Adaptive

Tracking Water, C, N, and P by Linking Local Scale Soil Hydrologic and Biogeochemical Features to Watershed Scale

Science.gov (United States)

Sedaghatdoost, A.; Mohanty, B.; Huang, Y.

2017-12-01

The biogeochemical cycles of carbon (C), nitrogen (N), and phosphorus (P) have many contemporary significance due to their critical roles in determining the structure and function of ecosystems. The objectives of our study is to find out temporal dynamics and spatial distribution of soil physical, chemical, and biological properties and their interaction with C, N, and P cycles in the soil for different land covers and weather conditions. The study is being conducted at three locations within Texas Water Observatory (TWO), including Riesel (USDA-ARS experimental watersheds), Texas A&M Agrilife Research Farm, and Danciger forest in Texas. Soil physical, hydraulic, chemical (total C, total N, total P, pH, EC, redox potential, N-NO3-, N-NH4+, PO42-, K, Ca, Mg, Na, Mn, and Alox and Feox), and microbiological (Microbial biomass C, N, and P, PLFA analysis, enzymatic activity) properties are being measured in the top 30 cm of the soil profile. Our preliminary data shows that biogeochemical processes would be more profound in the areas with higher temperature and precipitation as these factors stimulate microbial activity and thus influence C, N, and P cycles. Also concentrations of C and N are greater in woodlands relative to remnant grasslands as a consequence of the greater above- and below-ground productivity of woodlands relative to remnant grasslands. We hypothesize that finer soil textures have more organic matter, microbial population, and reactive surfaces for chemicals than coarse soils, as described in some recent literature. However, the microbial activity may not be active in fine textured soils as organic materials may be sorbed to clay surfaces or protected from decomposing organisms. We also expect reduced condition in saturated soils which will decrease carbon mineralization while increase denitrification and alkalinity in the soil. Spatio-temporal data with initial evaluation of biogeochemical factors/processes for different land covers will be presented.

How to `Elk-test' biogeochemical models in a data rich world? (Invited)

Science.gov (United States)

Reichstein, M.; Ciais, P.; Seneviratne, S. I.; Carvalhais, N.; Dalmonech, D.; Jung, M.; Luo, Y.; Mahecha, M. D.; Moffat, A. M.; Tomelleri, E.; Zaehle, S.

2010-12-01

Process-oriented biogeochemical models are a primary tool that has been used to project future states of climate and ecosystems in the earth system in response to anthropogenic and other forcing, and receive tremendous attention also in the context us the planned assessment report AR5 by the IPCC. However, model intercomparison and data-model comparison studies indicate large uncertainties regarding predictions of global interactions between atmosphere and biosphere. Rigorous scientific testing of these models is essential but very challenging, largely because neither it is technically and ethically possible to perform global earth-scale experiments, nor do we have replicate Earths for hypothesis testing. Hence, model evaluations have to rely on monitoring data such as ecological observation networks, global remote sensing or short-term and small-scale experiments. Here, we critically examine strategies of how model evaluations have been performed with a particular emphasis on terrestrial ecosystems. Often weak ‘validations’ are being presented which do not take advantage of all the relevant information in the observed data, but also apparent falsifications are made, that are hampered by a confusion of system processes with system behavior. We propose that a stronger integration of recent advances in pattern-oriented and system-oriented methodologies will lead to more satisfying earth system model evaluation and development, and show a few enlightening examples from terrestrial biogeochemical modeling and other disciplines. Moreover it is crucial to take advantage of the multidimensional nature of arising earth observation data sets which should be matched by models simultaneously, instead of relying on univariate simple comparisons. A new critical model evaluation is needed to improve future IPCC assessments in order to reduce uncertainties by distinguishing plausible simulation trajectories from fairy tales.

A biogeochemical transport model to simulate the attenuation of chlorinated hydrocarbon contaminant fluxes across the groundwater-surface water interface

DEFF Research Database (Denmark)

Malaguerra, Flavio; Binning, Philip John; Albrechtsen, Hans-Jørgen

2009-01-01

and biogeochemical transformation model of the discharge of a TCE plume into a stream, and to determine which parameters most strongly affect pollutant discharge concentrations. Here biological kinetics and the interaction with the soil matrix are implemented in PHREEQC. The ability of PHREEQC to deal with a large...

A high-resolution full-field range imaging system

Science.gov (United States)

Carnegie, D. A.; Cree, M. J.; Dorrington, A. A.

2005-08-01

There exist a number of applications where the range to all objects in a field of view needs to be obtained. Specific examples include obstacle avoidance for autonomous mobile robots, process automation in assembly factories, surface profiling for shape analysis, and surveying. Ranging systems can be typically characterized as being either laser scanning systems where a laser point is sequentially scanned over a scene or a full-field acquisition where the range to every point in the image is simultaneously obtained. The former offers advantages in terms of range resolution, while the latter tend to be faster and involve no moving parts. We present a system for determining the range to any object within a camera's field of view, at the speed of a full-field system and the range resolution of some point laser scans. Initial results obtained have a centimeter range resolution for a 10 second acquisition time. Modifications to the existing system are discussed that should provide faster results with submillimeter resolution.

A crisis resolution and home treatment team in Norway: a longitudinal survey study Part 2. Provision of professional services

Directory of Open Access Journals (Sweden)

Karlsson Bengt

2012-09-01

Full Text Available Abstract Background Crisis resolution and home treatment (CRHT is an emerging mode of delivering acute mental health care in the community. There is a paucity of knowledge regarding the workings of CRHT in the literature. This is the second paper in a series of three from the longitudinal survey of patients of a CRHT team in Norway, which was aimed at describing the characteristics of patients served, professional services provided, and clinical outcomes. This report focuses on the provision of professional services by the team. Methods The project was a descriptive, quantitative study based on the patient data from a longitudinal survey of one CRHT team in Norway. The participants of the survey, a total of 363 patients, constituted the complete registration of patients of this team in the period from February 2008 to July 2009. Results The average length of service by the team was about 15 days, and those with depression as the major symptom had the longest mean length of stay on the team. The team was engaged in providing a variety of services including individual treatments involving multiple professionals, group treatment meetings, and coordination activities involving external service sectors. While the type of professionals providing individual treatment was not associated with the severity level of clinical problems, those receiving various group treatment meetings had more serious level of clinical symptoms than those not receiving group treatment meetings. In addition coordination activities involving healthcare professionals and social services in the community were in line with the patients' clinical and social needs. The results of the study show that the team functioned effectively in addressing the general guidelines for the functioning of CRHT teams.

Biogeochemical proxies in Scleractinian corals used to reconstruct ocean circulation

International Nuclear Information System (INIS)

Guilderson, T.P.; Kashgarian, M.; Schrag, D.P.

2002-01-01

We utilize monthly 14 C data derived from coral archives in conjunction with ocean circulation models to address two questions: 1) how does the shallow circulation of the tropical Pacific vary on seasonal to decadal time scales and 2) which dynamic processes determine the mean vertical structure of the equatorial Pacific thermocline. Our results directly impact the understanding of global climate events such as the El Nino-Southern Oscillation (ENSO). To study changes in ocean circulation and water mass distribution involved in the genesis and evolution of ENSO and decadal climate variability, it is necessary to have records of climate variables several decades in length. Continuous instrumental records are limited because technology for continuous monitoring of ocean currents has only recently been available, and ships of opportunity archives such as COADS contain large spatial and temporal biases. In addition, temperature and salinity in surface waters are not conservative and thus can not be independently relied upon to trace water masses, reducing the utility of historical observations. Radiocarbon ( 14 C) in sea water is a quasi-conservative water mass tracer and is incorporated into coral skeletal material, thus coral 14 C records can be used to reconstruct changes in shallow circulation that would be difficult to characterize using instrumental data. High resolution Δ 14 C time-series such as these, provide a powerful constraint on the rate of surface ocean mixing and hold great promise to augment onetime surveys such as GEOSECS and WOCE. These data not only provide fundamental information about the shallow circulation of the Pacific, but can be used as a benchmark for the next generation of high resolution ocean models used in prognosticating climate change. (author)

Traceable components of terrestrial carbon storage capacity in biogeochemical models.

Science.gov (United States)

Xia, Jianyang; Luo, Yiqi; Wang, Ying-Ping; Hararuk, Oleksandra

2013-07-01

Biogeochemical models have been developed to account for more and more processes, making their complex structures difficult to be understood and evaluated. Here, we introduce a framework to decompose a complex land model into traceable components based on mutually independent properties of modeled biogeochemical processes. The framework traces modeled ecosystem carbon storage capacity (Xss ) to (i) a product of net primary productivity (NPP) and ecosystem residence time (τE ). The latter τE can be further traced to (ii) baseline carbon residence times (τ'E ), which are usually preset in a model according to vegetation characteristics and soil types, (iii) environmental scalars (ξ), including temperature and water scalars, and (iv) environmental forcings. We applied the framework to the Australian Community Atmosphere Biosphere Land Exchange (CABLE) model to help understand differences in modeled carbon processes among biomes and as influenced by nitrogen processes. With the climate forcings of 1990, modeled evergreen broadleaf forest had the highest NPP among the nine biomes and moderate residence times, leading to a relatively high carbon storage capacity (31.5 kg cm(-2) ). Deciduous needle leaf forest had the longest residence time (163.3 years) and low NPP, leading to moderate carbon storage (18.3 kg cm(-2) ). The longest τE in deciduous needle leaf forest was ascribed to its longest τ'E (43.6 years) and small ξ (0.14 on litter/soil carbon decay rates). Incorporation of nitrogen processes into the CABLE model decreased Xss in all biomes via reduced NPP (e.g., -12.1% in shrub land) or decreased τE or both. The decreases in τE resulted from nitrogen-induced changes in τ'E (e.g., -26.7% in C3 grassland) through carbon allocation among plant pools and transfers from plant to litter and soil pools. Our framework can be used to facilitate data model comparisons and model intercomparisons via tracking a few traceable components for all terrestrial carbon

Clio: An Autonomous Vertical Sampling Vehicle for Global Ocean Biogeochemical Mapping

Science.gov (United States)

Jakuba, M.; Gomez-Ibanez, D.; Saito, M. A.; Dick, G.; Breier, J. A., Jr.

2014-12-01

We report the preliminary design of a fast vertical profiling autonomous underwater vehicle, called Clio, designed to cost-effectively improve the understanding of marine microorganism ecosystem dynamics on a global scale. The insights into biogeochemical cycles to be gained from illuminating the relationships between ocean life and chemistry have led to establishment of the GEOTRACES program. The nutrient and trace element profiles generated by GEOTRACES will provide insight into what is happening biogeochemically, but not how it is happening, i.e., what biochemical pathways are active? Advances in sequencing technology and in situ preservation have made it possible to study the genomics (DNA), transcriptomics (RNA), proteomics (proteins and enzymes), metabolomics (lipids and other metabolites), and metallomics (metals), associated with marine microorganisms; however, these techniques require sample collection. To this end, Clio will carry two to four SUspended Particle Rosette (SUPR) multi-samplers to depths of 6000 m. Clio is being designed specifically to complement the GEOTRACES program—to operate simultaneously and independently of the wire-based sampling protocols developed for GEOTRACES. At each GEOTRACES ocean transect sampling station, Clio will be deployed from the ship, transit vertically to the seafloor, and then ascend to, and stop at up to 32 sampling depths, where it will filter up to 150 l of seawater per sample. Filtered samples for RNA will be administered a dose of preservative (RNALater) in situ. Clio must efficiently hold station at multiple depths between the surface and 6000 m, but also move rapidly between sampling depths. It must be chemically clean and avoid disturbing the water column while sampling. Clio must be operationally friendly, requiring few personnel to operate, and have minimal impact on shipboard operations. We have selected a positively-buoyant thruster-driven design with a quasi-isopycnal construction. Our simulations

Urban pollution of sediments: Impact on the physiology and burrowing activity of tubificid worms and consequences on biogeochemical processes

Energy Technology Data Exchange (ETDEWEB)

Pigneret, M., E-mail: mathilde.pigneret@univ-lyon1.fr [LEHNA, UMR CNRS 5023, Ecologie des Hydrosystèmes Naturels et Anthropisés, Université de Lyon, Université Lyon 1, ENTPE, 6 rue Raphael Dubois, 69622 Villeurbanne (France); Mermillod-Blondin, F.; Volatier, L.; Romestaing, C. [LEHNA, UMR CNRS 5023, Ecologie des Hydrosystèmes Naturels et Anthropisés, Université de Lyon, Université Lyon 1, ENTPE, 6 rue Raphael Dubois, 69622 Villeurbanne (France); Maire, E.; Adrien, J. [MATEIS, UMR CNRS 5510, INSA de Lyon, 25 avenue Jean Capelle, 69621 Villeurbanne (France); Guillard, L.; Roussel, D.; Hervant, F. [LEHNA, UMR CNRS 5023, Ecologie des Hydrosystèmes Naturels et Anthropisés, Université de Lyon, Université Lyon 1, ENTPE, 6 rue Raphael Dubois, 69622 Villeurbanne (France)

2016-10-15

In urban areas, infiltration basins are designed to manage stormwater runoff from impervious surfaces and allow the settling of associated pollutants. The sedimentary layer deposited at the surface of these structures is highly organic and multicontaminated (mainly heavy metals and hydrocarbons). Only few aquatic species are able to maintain permanent populations in such an extreme environment, including the oligochaete Limnodrilus hoffmeisteri. Nevertheless, the impact of urban pollutants on these organisms and the resulting influence on infiltration basin functioning remain poorly studied. Thus, the aim of this study was to determine how polluted sediments could impact the survival, the physiology and the bioturbation activity of L. hoffmeisteri and thereby modify biogeochemical processes occurring at the water-sediment interface. To this end, we conducted laboratory incubations of worms, in polluted sediments from infiltration basins or slightly polluted sediments from a stream. Analyses were performed to evaluate physiological state and burrowing activity (X-ray micro-tomography) of worms and their influences on biogeochemical processes (nutrient fluxes, CO{sub 2} and CH{sub 4} degassing rates) during 30-day long experiments. Our results showed that worms exhibited physiological responses to cope with high pollution levels, including a strong ability to withstand the oxidative stress linked to contamination with heavy metals. We also showed that the presence of urban pollutants significantly increased the burrowing activity of L. hoffmeisteri, demonstrating the sensitivity and the relevance of such a behavioural response as biomarker of sediment toxicity. In addition, we showed that X-ray micro-tomography was an adequate technique for accurate and non-invasive three-dimensional investigations of biogenic structures formed by bioturbators. The presence of worms induced stimulations of nutrient fluxes and organic matter recycling (between + 100% and 200% of CO

High resolution resistivity measurements at the Down Ampney research site

International Nuclear Information System (INIS)

Hallam, J.R.; Jackson, P.D.; Rainsbury, M.; Raines, M.

1991-01-01

A new high resolution resistivity surveying method is described for fault detection and characterisation. The resolution is shown to be significantly higher than conventional apparent resistivity profiling when applied to geological discontinuities such as faults. Nominal fault locations have been determined to an accuracy of 0.5 m, as proven by drilling. Two dimensional profiling and image enhancement of the resulting 2-D data set indicated the possibility of subsidiary fractures and/or lateral changes within the clay to clay' fault zone. The increased resolution allows greater confidence to be placed on both the fault detection and lateral perturbations derived from processed resistance and resistivity images. (Author)

Compilation of a global N{sub 2}O emission inventory for tropical rainforest soils using a detailed biogeochemical model

Energy Technology Data Exchange (ETDEWEB)

Werner, C.

2007-09-15

Nitrous oxide (N{sub 2}O) is a potent trace gas contributing to approximately 6% to the observed anthropogenic global warming. Soils have been identified to be the major source of atmospheric N{sub 2}O and tropical rainforest soils are thought to account for the largest part. Furthermore, various studies have shown that the magnitude of N{sub 2}O emissions from tropical rainforest soil is highly variable on spatial and temporal scales. Detailed, process-based models coupled to Geographic Information Systems (GIS) are considered promising tools for the calculation of N{sub 2}O emission inventories. This methodology explicitly accounts for the governing microbial processes as well as the environmental controls. Moreover, mechanistic biogeochemical models operating in daily time-steps (e.g. ForestDNDC-tropica) have been shown to capture the observed intra- and inter-annual variations of N{sub 2}O emissions. However, detailed N{sub 2}O emission datasets are required for model calibration and testing, but are currently few in numbers. In this study an automated measurement system was used to derive detailed datasets of N{sub 2}O, methane (CH{sub 4}) and carbon dioxide (CO{sub 2}) soil-atmosphere exchange and important environmental parameters from tropical rainforest soils in Kenya and Southwest China. Distinct differences were identified in the magnitude of the C and N soil-atmosphere exchange at the investigated sites and forest types. However, common features such as N{sub 2}O pulse emissions after dry season or the pronounced soil moisture dependency of N{sub 2}O emissions were observed at both sites. The derived datasets are unique for these tropical regions as so far no information about the source strength of these regions was available and, for the first time, the N{sub 2}O, CH{sub 4} and CO{sub 2} soil-atmosphere exchange was recorded in sub-daily resolution. The datasets were utilized in conjunction with available high-resolution datasets from Australian

MOPS-1.0: towards a model for the regulation of the global oceanic nitrogen budget by marine biogeochemical processes

Directory of Open Access Journals (Sweden)

I. Kriest

2015-09-01

Analysis of the model misfit with respect to observed biogeochemical tracer distributions and fluxes suggests a particle flux profile close to the one suggested by Martin et al. (1987. Simulated pelagic denitrification best agrees with the lower values between 59 and 84 Tg N yr−1 recently estimated by other authors.

Development of a 3D coupled physical-biogeochemical model for the Marseille coastal area (NW Mediterranean Sea): what complexity is required in the coastal zone?

Science.gov (United States)

Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

2013-01-01

Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007-2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model.

Compound-specific isotopic analyses: a novel tool for reconstruction of ancient biogeochemical processes

Science.gov (United States)

Hayes, J. M.; Freeman, K. H.; Popp, B. N.; Hoham, C. H.

1990-01-01

Patterns of isotopic fractionation in biogeochemical processes are reviewed and it is suggested that isotopic fractionations will be small when substrates are large. If so, isotopic compositions of biomarkers will reflect those of their biosynthetic precursors. This prediction is tested by consideration of results of analyses of geoporphyrins and geolipids from the Greenhorn Formation (Cretaceous, Western Interior Seaway of North America) and the Messel Shale (Eocene, lacustrine, southern Germany). It is shown (i) that isotopic compositions of porphyrins that are related to a common source, but which have been altered structurally, cluster tightly and (ii) that isotopic differences between geolipids and porphyrins related to a common source are equal to those observed in modern biosynthetic products. Both of these observations are consistent with preservation of biologically controlled isotopic compositions during diagenesis. Isotopic compositions of individual compounds can thus be interpreted in terms of biogeochemical processes in ancient depositional environments. In the Cretaceous samples, isotopic compositions of n-alkanes are covariant with those of total organic carbon, while delta values for pristane and phytane are covariant with those of porphyrins. In this unit representing an open marine environment, the preserved acyclic polyisoprenoids apparently derive mainly from primary material, while the extractable, n-alkanes derive mainly from lower levels of the food chain. In the Messel Shale, isotopic compositions of individual biomarkers range from -20.9 to -73.4% vs PDB. Isotopic compositions of specific compounds can be interpreted in terms of origin from methylotrophic, chemautotrophic, and chemolithotrophic microorganisms as well as from primary producers that lived in the water column and sediments of this ancient lake.

The VLA Sky Survey (VLASS): Description and Science Goals

Science.gov (United States)

Lacy, Mark; Baum, Stefi Alison; Chandler, Claire J.; Chatterjee, Shami; Murphy, Eric J.; Myers, Steven T.; VLASS Survey Science Group

2016-01-01

The VLA Sky Survey (VLASS) will cover 80% of the sky to a target depth of 70muJy in the 2-4GHz S-band of the Karl G. Jansky Very Large Array. With a resolution of 2.5 arcseconds, it will deliver the highest angular resolution of any wide area radio survey. Each area of the survey will be observed in three epochs spaced by 32 months in order to investigate the transient radio source population over an unprecedented combination of depth and area, resulting in a uniquely powerful search for hidden explosions in the Universe. The survey will be carried out in full polarization, allowing the characterization of the magneto-ionic medium in AGN and intervening galaxies over a wide range of redshifts, and the study of Faraday rotating foregrounds such as ionized bubbles in the Milky Way. The high angular resolution will allow us to make unambiguous identifications of nearly 10 million radio sources, comprised of both extragalactic objects and more nearby radio sources in the Milky Way, through matching to wide area optical/IR surveys such as SDSS, PanSTARRS, DES, LSST, EUCLID, WFIRST and WISE. Integral to the VLASS plan is an Education and Public Outreach component that will seek to inform and educate both the scientific community and the general public about radio astronomy through the use of social media, citizen science and educational activities. We will discuss opportunities for community involvement in VLASS, including the development of Enhanced Data Products and Services that will greatly increase the scientific utility of the survey.

Unraveling the Thousand Word Picture: An Introduction to Super-Resolution Data Analysis.

Science.gov (United States)

Lee, Antony; Tsekouras, Konstantinos; Calderon, Christopher; Bustamante, Carlos; Pressé, Steve

2017-06-14

Super-resolution microscopy provides direct insight into fundamental biological processes occurring at length scales smaller than light's diffraction limit. The analysis of data at such scales has brought statistical and machine learning methods into the mainstream. Here we provide a survey of data analysis methods starting from an overview of basic statistical techniques underlying the analysis of super-resolution and, more broadly, imaging data. We subsequently break down the analysis of super-resolution data into four problems: the localization problem, the counting problem, the linking problem, and what we've termed the interpretation problem.

Biogeochemical and engineered barriers for preventing spread of contaminants.

Science.gov (United States)

Baltrėnaitė, Edita; Lietuvninkas, Arvydas; Baltrėnas, Pranas

2018-02-01

The intensive industrial development and urbanization, as well as the negligible return of hazardous components to the deeper layers of the Earth, increases the contamination load on the noosphere (i.e., the new status of the biosphere, the development of which is mainly controlled by the conscious activity of a human being). The need for reducing the spread and mobility of contaminants is growing. The insights into the role of the tree in the reduction of contaminant mobility through its life cycle are presented to show an important function performed by the living matter and its products in reducing contamination. For maintaining the sustainable development, natural materials are often used as the media in the environmental protection technologies. However, due to increasing contamination intensity, the capacity of natural materials is not sufficiently high. Therefore, the popularity of engineered materials, such as biochar which is the thermochemically modified lignocellulosic product, is growing. The new approaches, based on using the contaminant footprint, as well as natural (biogeochemical) and engineered barriers for reducing contaminant migration and their application, are described in the paper.

Simulation Based Exploration of Critical Zone Dynamics in Intensively Managed Landscapes

Science.gov (United States)

Kumar, P.

2017-12-01

The advent of high-resolution measurements of topographic and (vertical) vegetation features using areal LiDAR are enabling us to resolve micro-scale ( 1m) landscape structural characteristics over large areas. Availability of hyperspectral measurements is further augmenting these LiDAR data by enabling the biogeochemical characterization of vegetation and soils at unprecedented spatial resolutions ( 1-10m). Such data have opened up novel opportunities for modeling Critical Zone processes and exploring questions that were not possible before. We show how an integrated 3-D model at 1m grid resolution can enable us to resolve micro-topographic and ecological dynamics and their control on hydrologic and biogeochemical processes over large areas. We address the computational challenge of such detailed modeling by exploiting hybrid CPU and GPU computing technologies. We show results of moisture, biogeochemical, and vegetation dynamics from studies in the Critical Zone Observatory for Intensively managed Landscapes (IMLCZO) in the Midwestern United States.

Target Selection for the SDSS-III MARVELS Survey

Science.gov (United States)

Paegert, Martin; Stassun, Keivan G.; De Lee, Nathan; Pepper, Joshua; Fleming, Scott W.; Sivarani, Thirupathi; Mahadevan, Suvrath; Mack, Claude E., III; Dhital, Saurav; Hebb, Leslie; Ge, Jian

2015-06-01

We present the target selection process for the Multi-object APO Radial Velocity Exoplanets Large-area Survey (MARVELS), which is part of the Sloan Digital Sky Survey (SDSS) III. MARVELS is a medium-resolution (R ∼ 11,000) multi-fiber spectrograph capable of obtaining radial velocities for 60 objects at a time in order to find brown dwarfs and giant planets. The survey was configured to target dwarf stars with effective temperatures approximately between 4500 and 6250 K. For the first 2 years MARVELS relied on low-resolution spectroscopic pre-observations to estimate the effective temperature and log (g) for candidate stars and then selected suitable dwarf stars from this pool. Ultimately, the pre-observation spectra proved ineffective at filtering out giant stars; many giants were incorrectly classified as dwarfs, resulting in a giant contamination rate of ∼30% for the first phase of the MARVELS survey. Thereafter, the survey instead applied a reduced proper motion cut to eliminate giants and used the Infrared Flux Method to estimate effective temperatures, using only extant photmetric and proper-motion catalog information. The target selection method introduced here may be useful for other surveys that need to rely on extant catalog data for selection of specific stellar populations.

Using coral Ba/Ca records to investigate seasonal to decadal scale biogeochemical cycling in the surface and intermediate ocean.

Science.gov (United States)

LaVigne, M.; Cobb, K. M.; DeLong, K. L.; Freiberger, M. M.; Grottoli, A. G.; Hill, T. M.; Miller, H. R.; Nurhati, I. S.; Richey, J. N.; Serrato Marks, G.; Sherrell, R. M.

2016-12-01

Dissolved barium (BaSW), a bio-intermediate element, is linked to several biogeochemical processes such as the cycling and export of nutrients, organic carbon (Corg), and barite in surface and intermediate oceans. Dynamic BaSW cycling has been demonstrated in the water column on short timescales (days-weeks) while sedimentary records have documented geologic-scale changes in barite preservation driven by export production. Our understanding of how seasonal-decadal scale climate variability impacts these biogeochemical processes currently lacks robust records. Ba/Ca calibrations in surface and deep sea corals suggest barium is incorporated via cationic substitution in both aragonite and calcite. Here we demonstrate the utility of Ba/Ca for reconstructing biogeochemical variability using examples of surface and deep sea coral records. Century-long deep sea coral records from the California Current System (bamboo corals: 900-1500m) record interannual variations in Ba/Ca, likely reflecting changes in barite formation via bacterial Corg respiration or barite saturation state. A surface Porites coral Ba/Ca record from Christmas Island (central equatorial Pacific: 1978-1995) shows maxima during low productivity El Niño warm periods, suggesting that variations in BaSW are driven by biological removal via direct cellular uptake or indirectly via barite precipitation with the decomposition of large phytoplankton blooms at this location. Similarly, a sixteen-year long Siderastera siderea surface coral record from Dry Tortugas, FL (Gulf of Mexico: 1991-2007) shows seasonal Ba/Ca cycles that align with annual chlorophyll and δ13C. Taken together, these records demonstrate the linkages among Corg, nutrient cycling and BaSW in the surface and intermediate ocean on seasonal to decadal timescales. Multi-proxy paleoceanographic reconstructions including Ba/Ca have the potential to elucidate the mechanisms linking past climate, productivity, nutrients, and BaSW cycling in the past.

Bacterial Production and Enzymatic Activities in Deep-Sea Sediments of the Pacific Ocean: Biogeochemical Implications of Different Temperature Constraints

Science.gov (United States)

Danovaro, R.; Corinaldesi, C.; dell'Anno, A.

2002-12-01

The deep-sea bed, acting as the ultimate sink for organic material derived from the upper oceans primary production, is now assumed to play a key role in biogeochemical cycling of organic matter on global scale. Early diagenesis of organic matter in marine sediments is dependent upon biological processes (largely mediated by bacterial activity) and by molecular diffusion. Organic matter reaching the sea floor by sedimentation is subjected to complex biogeochemical transformations that make organic matter largely unsuitable for direct utilization by benthic heterotrophs. Extracellular enzymatic activities in the sediment is generally recognized as the key step in the degradation and utilization of organic polymers by bacteria and a key role in biopolymeric carbon mobilization is played by aminopeptidase, alkaline phosphatase and glucosidase activities. In the present study we investigated bacterial density, bacterial C production and exo-enzymatic activities (aminopeptidase, glucosidase and phosphatase activity) in deep-sea sediments of the Pacific Ocean in relation with the biochemical composition of sediment organic matter (proteins, carbohydrates and lipids), in order to gather information on organic matter cycling and diagenesis. Benthic viral abundance was also measured to investigate the potential role of viruses on microbial loop functioning. Sediment samples were collected at eight stations (depth ranging from 2070-3100 m) along two transects located at the opposite side (north and south) of ocean seismic ridge Juan Fernandez (along latitudes 33° 20' - 33° 40'), constituted by the submerged vulcanoes, which connects the Chilean coasts to Rapa Nui Island. Since the northern and southern sides of this ridge apparently displayed small but significant differences in deep-sea temperature (related to the general ocean circulation), this sampling strategy allowed also investigating the role of different temperature constraints on bacterial activity and

GEOTRACES – An international study of the global marine biogeochemical cycles of trace elements and their isotopes

OpenAIRE

Henderson, G.M.; Anderson, R.F.; Adkins, J.; Andersson, P.; Boyle, E.A.; Cutter, Greg; Baar, H. de; Eisenhauer, Anton; Frank, Martin; Francois, R.; Orians, Kristin; Gamo, T.; German, C.; Jenkins, W.; Moffett, J.

2007-01-01

Trace elements serve important roles as regulators of ocean processes including marine ecosystem dynamics and carbon cycling. The role of iron, for instance, is well known as a limiting micronutrient in the surface ocean. Several other trace elements also play crucial roles in ecosystem function and their supply therefore controls the structure, and possibly the productivity, of marine ecosystems. Understanding the biogeochemical cycling of these micronutrients requires knowledge of their div...

Response of phytoplankton and enhanced biogeochemical activity to an episodic typhoon event in the coastal waters of Japan

Science.gov (United States)

Tsuchiya, Kenji; Kuwahara, Victor S.; Yoshiki, Tomoko M.; Nakajima, Ryota; Shimode, Shinji; Kikuchi, Tomohiko; Toda, Tatsuki

2017-07-01

Daily field surveys were conducted at a coastal-shelf station in Sagami Bay, Japan after the passage of typhoon Malou in 2010 to evaluate the after-effect of a typhoon passage on the physical-chemical environment, phytoplankton bloom formation and microbial processes within and below the euphotic layer. The passage of Malou induced an abrupt decrease in salinity and increased loading of nutrients to the euphotic layer. Dinoflagellates dominated the phytoplankton community at the surface, whereas diatoms dominated below the surface just after the passage of Malou. Four days later, the dominant dinoflagellate taxa at the surface changed from Protoperidinium spp. to Prorocentrum spp. and Ceratium spp., indicating a dinoflagellate community succession from heterotrophic to autotrophic functional groups. Five days after passage, the dominant phytoplankton taxa shifted from dinoflagellates to diatom groups of Chaetoceros spp. and Cerataulina spp. throughout the water column. Below the euphotic layer, there were increases in diatom frustules, mainly composed of Chaetoceros spp. and Cerataulina spp., bacterial abundance and NH4+ concentrations. Diatom carbon biomass contributed to approximately half of particulate organic carbon (POC) below the euphotic layer, suggesting a significant contribution of diatoms to POC sinking flux after the passage of a typhoon. Bacterial abundance was positively correlated to both phaeopigment concentrations (p affect biogeochemical activities within and below the euphotic layer in temperate coastal waters.

QUAL-NET, a high temporal-resolution eutrophication model for large hydrographic networks

Science.gov (United States)

Minaudo, Camille; Curie, Florence; Jullian, Yann; Gassama, Nathalie; Moatar, Florentina

2018-04-01

To allow climate change impact assessment of water quality in river systems, the scientific community lacks efficient deterministic models able to simulate hydrological and biogeochemical processes in drainage networks at the regional scale, with high temporal resolution and water temperature explicitly determined. The model QUALity-NETwork (QUAL-NET) was developed and tested on the Middle Loire River Corridor, a sub-catchment of the Loire River in France, prone to eutrophication. Hourly variations computed efficiently by the model helped disentangle the complex interactions existing between hydrological and biological processes across different timescales. Phosphorus (P) availability was the most constraining factor for phytoplankton development in the Loire River, but simulating bacterial dynamics in QUAL-NET surprisingly evidenced large amounts of organic matter recycled within the water column through the microbial loop, which delivered significant fluxes of available P and enhanced phytoplankton growth. This explained why severe blooms still occur in the Loire River despite large P input reductions since 1990. QUAL-NET could be used to study past evolutions or predict future trajectories under climate change and land use scenarios.

QUAL-NET, a high temporal-resolution eutrophication model for large hydrographic networks

Directory of Open Access Journals (Sweden)

C. Minaudo

2018-04-01

Full Text Available To allow climate change impact assessment of water quality in river systems, the scientific community lacks efficient deterministic models able to simulate hydrological and biogeochemical processes in drainage networks at the regional scale, with high temporal resolution and water temperature explicitly determined. The model QUALity-NETwork (QUAL-NET was developed and tested on the Middle Loire River Corridor, a sub-catchment of the Loire River in France, prone to eutrophication. Hourly variations computed efficiently by the model helped disentangle the complex interactions existing between hydrological and biological processes across different timescales. Phosphorus (P availability was the most constraining factor for phytoplankton development in the Loire River, but simulating bacterial dynamics in QUAL-NET surprisingly evidenced large amounts of organic matter recycled within the water column through the microbial loop, which delivered significant fluxes of available P and enhanced phytoplankton growth. This explained why severe blooms still occur in the Loire River despite large P input reductions since 1990. QUAL-NET could be used to study past evolutions or predict future trajectories under climate change and land use scenarios.

Biogeochemical malfunctioning in sediments beneath a deep-water fish farm.

Science.gov (United States)

Valdemarsen, Thomas; Bannister, Raymond J; Hansen, Pia K; Holmer, Marianne; Ervik, Arne

2012-11-01

We investigated the environmental impact of a deep water fish farm (190 m). Despite deep water and low water currents, sediments underneath the farm were heavily enriched with organic matter, resulting in stimulated biogeochemical cycling. During the first 7 months of the production cycle benthic fluxes were stimulated >29 times for CO(2) and O(2) and >2000 times for NH(4)(+), when compared to the reference site. During the final 11 months, however, benthic fluxes decreased despite increasing sedimentation. Investigations of microbial mineralization revealed that the sediment metabolic capacity was exceeded, which resulted in inhibited microbial mineralization due to negative feed-backs from accumulation of various solutes in pore water. Conclusions are that (1) deep water sediments at 8 °C can metabolize fish farm waste corresponding to 407 and 29 mmol m(-2) d(-1) POC and TN, respectively, and (2) siting fish farms at deep water sites is not a universal solution for reducing benthic impacts. Copyright © 2012 Elsevier Ltd. All rights reserved.

Relative Linkages of Stream Dissolved Oxygen with the Hydroclimatic and Biogeochemical Drivers across the Gulf Coast of U.S.A.

Science.gov (United States)

Gebreslase, A. K.; Abdul-Aziz, O. I.

2017-12-01

Dynamics of coastal stream water quality is influenced by a multitude of interacting environmental drivers. A systematic data analytics approach was employed to determine the relative linkages of stream dissolved oxygen (DO) with the hydroclimatic and biogeochemical variables across the Gulf Coast of U.S.A. Multivariate pattern recognition techniques of PCA and FA, alongside Pearson's correlation matrix, were utilized to examine the interrelation of variables at 36 water quality monitoring stations from USGS NWIS and EPA STORET databases. Power-law based partial least square regression models with a bootstrap Monte Carlo procedure (1000 iterations) were developed to estimate the relative linkages of dissolved oxygen with the hydroclimatic and biogeochemical variables by appropriately resolving multicollinearity (Nash-Sutcliffe efficiency = 0.58-0.94). Based on the dominant drivers, stations were divided into four environmental regimes. Water temperature was the dominant driver of DO in the majority of streams, representing most the northern part of Gulf Coast states. However, streams in the southern part of Texas and Florida showed a dominant pH control on stream DO. Further, streams representing the transition zone of the two environmental regimes showed notable controls of multiple drivers (i.e., water temperature, stream flow, and specific conductance) on the stream DO. The data analytics research provided profound insight to understand the dynamics of stream DO with the hydroclimatic and biogeochemical variables. The knowledge can help water quality managers in formulating plans for effective stream water quality and watershed management in the U.S. Gulf Coast. Keywords Data analytics, coastal streams, relative linkages, dissolved oxygen, environmental regimes, Gulf Coast, United States.

Biogeochemical anomaly above oil-containing structures in an arid zone. [Growth stimulation of plants by sodium naphthenate used for prospecting

Energy Technology Data Exchange (ETDEWEB)

Grishchenko, O.M.

1983-01-01

Visual biological anomalies above the oil-containing structures are characterized by bright green coloring of the vegetation cover, gigantism of the plants, extended vegetation period of the plants, deformity of the plants, etc. Biological anomalies are associated with geological features and are observed only above the zone of fault disorders of the earth's crust, above deep faults. A conclusion is drawn about the presence above the oil-bearing structures in the arid zone of a biogeochemical anomaly whose origin is explained by the biological activity of oil and its derivatives. The petroleum growth matter is the sodium salt of naphthene acid, a growth stimulator of plants and animals. The oils of the USSR contain 0.8-4.8% naphthene acids, which effuse through the faults into the root area levels of the soil. As a result of stimulation of growth and development by the petroleum growth matter, the vegetation period of the plants is prolonged. Under the influence of natural petroleum growth substances, the height and productivity of the anomalous plants increases 2-3-fold. Formation and manifestation of signs of biogeochemical anomalies above the oil-bearing structures in the arid zone predetermine the following conditions: presence of fault disorders of the earth's crust; salinity of the root area of the soil layer necessary for neutralization of the naphthene acids with subsequent formation of the biologically active naphthenates; aridity of the desert landscape; plain relief excluding color diversity in vegetation cover because of nonuniform wetting, etc. The established biogeochemical anomaly can be used in prospecting and exploration of oil, gas and bitumen, and also in determining the fault disorders of the earth's crust.

Vertical Cable Seismic Survey for SMS exploration

Science.gov (United States)

Asakawa, Eiichi; Murakami, Fumitoshi; Tsukahara, Hotoshi; Mizohata, Shigeharu

2014-05-01

The Vertical Cable Seismic (VCS) survey is one of the reflection seismic methods. It uses hydrophone arrays vertically moored from the seafloor to record acoustic waves generated by sea-surface, deep-towed or ocean bottom sources. Analyzing the reflections from the sub-seabed, we could look into the subsurface structure. Because the VCS is an efficient high-resolution 3D seismic survey method for a spatially-bounded area, we proposed it for the SMS survey tool development program that the Ministry of Education, Culture, Sports, Science and Technology (MEXT) started in 2009. We have been developing the VCS survey system, including not only data acquisition hardware but data processing and analysis technique. We carried out several VCS surveys combining with surface towed source, deep towed source and ocean bottom source. The water depths of these surveys are from 100m up to 2100 m. Through these experiments, our VCS data acquisition system has been also completed. But the data processing techniques are still on the way. One of the most critical issues is the positioning in the water. The uncertainty in the positions of the source and of the hydrophones in water degraded the quality of subsurface image. GPS navigation system is available on sea surface, but in case of deep-towed source or ocean bottom source, the accuracy of shot position with SSBL/USBL is not sufficient for the very high-resolution imaging. We have developed a new approach to determine the positions in water using the travel time data from the source to VCS hydrophones. In 2013, we have carried out the second VCS survey using the surface-towed high-voltage sparker and ocean bottom source in the Izena Cauldron, which is one of the most promising SMS areas around Japan. The positions of ocean bottom source estimated by this method are consistent with the VCS field records. The VCS data with the sparker have been processed with 3D PSTM. It gives the very high resolution 3D volume deeper than two

Evidence of linked biogeochemical and hydrological processes in homogeneous and layered vadose zone systems

Science.gov (United States)

McGuire, J. T.; Hansen, D. J.; Mohanty, B. P.

2010-12-01

Understanding chemical fate and transport in the vadose zone is critical to protect groundwater resources and preserve ecosystem health. However, prediction can be challenging due to the dynamic hydrologic and biogeochemical nature of the vadose zone. Additional controls on hydrobiogeochemical processes are added by subsurface structural heterogeneity. This study uses repacked soil column experiments to quantify linkages between microbial activity, geochemical cycling and hydrologic flow. Three “short” laboratory soil columns were constructed to evaluate the effects of soil layering: a homogenized medium-grained sand, homogenized organic-rich loam, and a sand-over-loam layered column. In addition, two “long” columns were constructed using either gamma-irradiated (sterilized) or untreated sediments to evaluate the effects of both soil layers and the presence of microorganisms. The long columns were packed identically; a medium-grained sand matrix with two vertically separated and horizontally offset lenses of organic-rich loam. In all 5 columns, downward and upward infiltration of water was evaluated to simulate rainfall and rising water table events respectively. In-situ colocated probes were used to measure soil water content, matric potential, Eh, major anions, ammonium, Fe2+, and total sulfide. Enhanced biogeochemical cycling was observed in the short layered column versus the short, homogeneous columns, and enumerations of iron and sulfate reducing bacteria were 1-2 orders of magnitude greater. In the long columns, microbial activity caused mineral bands and produced insoluble gases that impeded water flow through the pores of the sediment. Capillary barriers, formed around the lenses due to soil textural differences, retarded water flow rates through the lenses. This allowed reducing conditions to develop, evidenced by the production of Fe2+ and S2-. At the fringes of the lenses, Fe2+ oxidized to form Fe(III)-oxide bands that further retarded water

Development of Modal Aerosol Module in CAM5 for Biogeochemical Cycles

Energy Technology Data Exchange (ETDEWEB)

Liu, Xiaohong [Univ. of Wyoming, Laramie, WY (United States)

2017-11-18

This project aims at developing new capabilities for the Modal Aerosol Module in the DOE’s E3SM model with the applications to the global biogeochemical cycle. The impacts of the new developments on model simulations of clouds and climate will be examined. There are thee objectives for this project study: Implementing primary marine organic aerosols into the modal aerosol module (MAM) and investigate effects of primary marine organic aerosols on climate in E3SM; Implementing dust speciation in MAM and investigate the effect of dust species on mixed-phase clouds through indirect effects in E3SM; Writing papers documenting the new MAM developments (e.g., MAM4 documentation paper, marine organic aerosol paper, dust speciation); These objectives will be accomplished in collaborations with Drs. Phil Rasch, Steve Ghan, and Susannah Burrows at Pacific Northwest National Laboratory.

Development of a 3D coupled physical-biogeochemical model for the Marseille coastal area (NW Mediterranean Sea: what complexity is required in the coastal zone?

Directory of Open Access Journals (Sweden)

Marion Fraysse

Full Text Available Terrestrial inputs (natural and anthropogenic from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C and nitrogen (N cycles and a second model that also considers the phosphorus (P cycle. Realistic simulations were performed for a period of 5 years (2007-2011. The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model.

High Resolution Energetic X-ray Imager (HREXI)

Science.gov (United States)

Grindlay, Jonathan

We propose to design and build the first imaging hard X-ray detector system that incorporates 3D stacking of closely packed detector readouts in finely-spaced imaging arrays with their required data processing and control electronics. In virtually all imaging astronomical detectors, detector readout is done with flex connectors or connections that are not vertical but rather horizontal , requiring loss of focal plane area. For high resolution pixel detectors needed for high speed event-based X-ray imaging, from low energy applications (CMOS) with focusing X-ray telescopes, to hard X-ray applications with pixelated CZT for large area coded aperture telescopes, this new detector development offers great promise. We propose to extend our previous and current APRA supported ProtoEXIST program that has developed the first large area imaging CZT detectors and demonstrated their astrophysical capabilities on two successful balloon flight to a next generation High Resolution Energetic X-ray Imager (HREXI), which would incorporate microvia technology for the first time to connect the readout ASIC on each CZT crystal directly to its control and data processing system. This 3-dimensional stacking of detector and readout/control system means that large area (>2m2) imaging detector planes for a High Resolution Wide-field hard X-ray telescope can be built with initially greatly reduced detector gaps and ultimately with no gaps. This increases detector area, efficiency, and simplicity of detector integration. Thus higher sensitivity wide-field imagers will be possible at lower cost. HREXI will enable a post-Swift NASA mission such as the EREXS concept proposed to PCOS to be conducted as a future MIDEX mission. This mission would conduct a high resolution (<2 arcmin) , broad band (5 200 keV) hard X-ray survey of black holes on all scales with ~10X higher sensitivity than Swift. In the current era of Time Domain Astrophysics, such a survey capability, in conjunction with a n

Observationally-based Metrics of Ocean Carbon and Biogeochemical Variables are Essential for Evaluating Earth System Model Projections

Science.gov (United States)

Russell, J. L.; Sarmiento, J. L.

2017-12-01

The Southern Ocean is central to the climate's response to increasing levels of atmospheric greenhouse gases as it ventilates a large fraction of the global ocean volume. Global coupled climate models and earth system models, however, vary widely in their simulations of the Southern Ocean and its role in, and response to, the ongoing anthropogenic forcing. Due to its complex water-mass structure and dynamics, Southern Ocean carbon and heat uptake depend on a combination of winds, eddies, mixing, buoyancy fluxes and topography. Understanding how the ocean carries heat and carbon into its interior and how the observed wind changes are affecting this uptake is essential to accurately projecting transient climate sensitivity. Observationally-based metrics are critical for discerning processes and mechanisms, and for validating and comparing climate models. As the community shifts toward Earth system models with explicit carbon simulations, more direct observations of important biogeochemical parameters, like those obtained from the biogeochemically-sensored floats that are part of the Southern Ocean Carbon and Climate Observations and Modeling project, are essential. One goal of future observing systems should be to create observationally-based benchmarks that will lead to reducing uncertainties in climate projections, and especially uncertainties related to oceanic heat and carbon uptake.

Biogeochemical Processes Controlling Microbial Reductive Precipitation of Radionuclides

International Nuclear Information System (INIS)

Fredrickson, James K.; Brooks, Scott C.

2004-01-01

This project is focused on elucidating the principal biogeochemical reactions that govern the concentrations, chemical speciation, and distribution of the redox sensitive contaminants uranium (U) and technetium (Tc) between the aqueous and solid phases. The research is designed to provide new insights into the under-explored areas of competing geochemical and microbiological oxidation-reduction reactions that govern the fate and transport of redox sensitive contaminants and to generate fundamental scientific understanding of the identity and stoichiometry of competing microbial reduction and geochemical oxidation reactions. These goals and objectives are met through a series of hypothesis-driven tasks that focus on (1) the use of well-characterized microorganisms and synthetic and natural mineral oxidants, (2) advanced spectroscopic and microscopic techniques to monitor redox transformations of U and Tc, and (3) the use of flow-through experiments to more closely approximate groundwater environments. The results are providing an improved understanding and predictive capability of the mechanisms that govern the redox dynamics of radionuclides in subsurface environments. For purposes of this poster, the results are divided into three sections: (1) influence of Ca on U(VI) bioreduction; (2) localization of biogenic UO 2 and TcO 2 ; and (3) reactivity of Mn(III/IV) oxides.

In-stream biogeochemical processes of a temporary river.

Science.gov (United States)

Tzoraki, Ourania; Nikolaidis, Nikolaos P; Amaxidis, Yorgos; Skoulikidis, Nikolaos Th

2007-02-15

A reach at the estuary of Krathis River in Greece was used to assess how in-stream processes alter its hydrologic and biogeochemical regime. Krathis River exhibited high annual flow variability and its transmission losses become significant, especially during the dry months. These transmission losses are enhanced in chemistry due to release of nutrients from river sediments. These fluxes are significant because they correspond to 11% of the dissolved inorganic nitrogen flux of the river. Release of nitrogen species was influenced by temperature, while release of phosphate was not because phosphate levels were below the equilibrium concentration. There is a significant amount of sediments with fine composition that create "hot spot" areas in the river reach. These sediments are mobilized during the first flush events in the fall carrying with them a significant load of nutrient and suspended matter to the coastal zone. The nutrient organic content of sediments was also significant and it was studied in terms of its mineralization capacity. The capacity for mineralization was influenced by soil moisture, exhibiting significant capacity even at moisture levels of 40%. Temporary rivers are sensitive ecosystems, vulnerable to climate changes. In-stream processes play a significant role in altering the hydrology and biogeochemistry of the water and its impacts to the coastal zone.

Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

Science.gov (United States)

Smith, P.; Cotrufo, M. F.; Rumpel, C.; Paustian, K.; Kuikman, P. J.; Elliott, J. A.; McDowell, R.; Griffiths, R. I.; Asakawa, S.; Bustamante, M.; House, J. I.; Sobocká, J.; Harper, R.; Pan, G.; West, P. C.; Gerber, J. S.; Clark, J. M.; Adhya, T.; Scholes, R. J.; Scholes, M. C.

2015-11-01

Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient, and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can either provide co-benefits to other services or result in trade-offs. In this critical review, we report the state-of-the-art understanding concerning the biogeochemical cycles and biodiversity in soil, and relate these to the provisioning, regulating, supporting, and cultural ecosystem services which they underpin. We then outline key knowledge gaps and research challenges, before providing recommendations for management activities to support the continued delivery of ecosystem services from soils. We conclude that, although soils are complex, there are still knowledge gaps, and fundamental research is still needed to better understand the relationships between different facets of soils and the array of ecosystem services they underpin, enough is known to implement best practices now. There is a tendency among soil scientists to dwell on the complexity and knowledge gaps rather than to focus on what we do know and how this knowledge can be put to use to improve the delivery of ecosystem services. A significant challenge is to find effective ways to share knowledge with soil managers and policy makers so that best management can be implemented. A key element of this knowledge exchange must be to raise awareness of the ecosystems services underpinned by soils and thus the natural capital they provide. We know enough to start moving in the right direction while we conduct research to fill in our knowledge gaps. The lasting legacy of the International Year of Soils in 2015 should be for soil scientists to work together with policy makers and land managers to put soils at the centre of environmental policy making and land management decisions.

Characteristics of Sounds Emitted During High-Resolution Marine Geophysical Surveys

Science.gov (United States)

2016-03-24

Highway, Suite 1204, Arlington, VA 22202-4302. Respondents should be aware that notwithstanding any other provision of law , no person shall be...marine transportation , oil and gas, marine mineral, and renewable energy projects. In particular, geophysical surveys support infrastructure siting...sand resource delineation, geomorphic characterization, environmental monitoring, archaeological resource identification, and mapping of shallow

Biogeochemical Cycles for Combining Chemical Knowledge and ESD Issues in Greek Secondary Schools Part II: Assessing the Impact of the Intervention

Science.gov (United States)

Koutalidi, Sophia; Psallidas, Vassilis; Scoullos, Michael

2016-01-01

In searching for effective ways to combine science/chemical education with EE/ESD, new didactic materials were designed and produced focussing on biogeochemical cycles and their connection to sustainable development. The materials were experimentally applied in 16 Greek schools under the newly introduced compulsory "school project" which…

Application of a SEEK filter to a 1D biogeochemical model of the Ligurian Sea: Twin experiments and real data assimilation

NARCIS (Netherlands)

Raick, C.; Alvera-Azcarate, A.; Barth, A.; Brankart, J.-M.; Soetaert, K.E.R.; Grégoire, M.

2007-01-01

The Singular Evolutive Extended Kalman (SEEK) filter has been implemented to assimilate in-situ data in a 1D coupled physical-ecosystem model of the Ligurian Sea. The biogeochemical model describes the partly decoupled nitrogen and carbon cycles of the pelagic food web. The GHER hydrodynamic model

Key biogeochemical factors affecting soil carbon storage in Posidonia meadows

KAUST Repository

Serrano, Oscar; Ricart, Aurora M.; Lavery, Paul S.; Mateo, Miguel Angel; Arias-Ortiz, Ariane; Masque, Pere; Rozaimi, Mohammad; Steven, Andy; Duarte, Carlos M.

2016-01-01

Biotic and abiotic factors influence the accumulation of organic carbon (C-org) in seagrass ecosystems. We surveyed Posidonia sinuosa meadows growing in different water depths to assess the variability in the sources, stocks and accumulation rates of Corg. We show that over the last 500 years, P. sinuosa meadows closer to the upper limit of distribution (at 2-4 m depth) accumulated 3- to 4-fold higher C-org stocks (averaging 6.3 kg C-org m(-2) at 3- to 4-fold higher rates (12.8 gC(org) m(-2) yr(-1) ) compared to meadows closer to the deep limits of distribution (at 6-8 m depth; 1.8 kg C-org m(-2) and 3.6 g C-org m(-2) yr(-1) . In shallower meadows, C-org stocks were mostly derived from seagrass detritus (88% in average) compared to meadows closer to the deep limit of distribution (45% on average). In addition, soil accumulation rates and fine-grained sediment content (< 0.125 mm) in shallower meadows (2.0 mm yr(-1) and 9 %, respectively) were approximately 2-fold higher than in deeper meadows (1.2 mm yr(-1) and 5 %, respectively). The C-org stocks and accumulation rates accumulated over the last 500 years in bare sediments (0.6 kg C-org m(-2) and 1.2 g C-org m(-2) yr(-1)were 3- to 11-fold lower than in P. sinuosa meadows, while fine-grained sediment content (1 %) and seagrass detritus contribution to the Corg pool (20 %) were 8- and 3-fold lower than in Posidonia meadows, respectively. The patterns found support the hypothesis that Corg storage in seagrass soils is influenced by interactions of biological (e.g., meadow productivity, cover and density), chemical (e.g., recalcitrance of Corg stocks) and physical (e.g., hydrodynamic energy and soil accumulation rates) factors within the meadow. We conclude that there is a need to improve global estimates of seagrass carbon storage accounting for biogeochemical factors driving variability within habitats.

The significance of GW-SW interactions for biogeochemical processes in sandy streambeds

Science.gov (United States)

Arnon, Shai; De Falco, Natalie; Fox, Aryeh; Laube, Gerrit; Schmidt, Christian; Fleckenstein, Jan; Boano, Fulvio

2015-04-01

Stream-groundwater interactions have a major impact on hyporheic exchange fluxes in sandy streambeds. However, the physical complexity of natural streams has limited our ability to study these types of interactions systematically, and to evaluate their importance to biogeochemical processes and nutrient cycling. In this work we were able to quantify the effect of losing and gaining fluxes on hyporheic exchange and nutrient cycling in homogeneous and heterogeneous streambeds by combining experiments in laboratory flumes and modeling. Tracer experiments for measuring hyporheic exchange were done using dyes and NaCl under various combinations of overlying water velocity and losing or gaining fluxes. Nutrient cycling experiments were conducted after growing a benthic biofilm by spiking with Sodium Benzoate (as a source of labile dissolved organic carbon, DOC) and measuring DOC and oxygen dynamics. The combination of experimental observations and modeling revealed that interfacial transport increases with the streambed hydraulic conductivity and proportional to the square of the overlying water velocity. Hyporheic exchange fluxes under losing and gaining flow conditions were similar, and became smaller when the losing or gaining flux increases. Increasing in streambed hydraulic conductivity led to higher hyporheic fluxes and reduction in the effects of losing and gaining flow conditions to constrain exchange. Despite the evident effect of flow conditions on hyporheic exchange, labile DOC uptake was positively linked to increasing overlying water velocity but was not affected by losing and gaining fluxes. This is because microbial aerobic activity was taking place at the upper few millimeters of the streambed as shown by local oxygen consumption rates, which was measured using microelectrodes. Based on modeling work, it is expected that GW-SW interaction will be more significant for less labile DOC and anaerobic processes. Our results enable us to study systematically

Novel imaging techniques, integrated with mineralogical, geochemical and microbiological characterizations to determine the biogeochemical controls on technetium mobility in FRC sediments

Energy Technology Data Exchange (ETDEWEB)

Jonathan R. Lloyd

2009-02-03

The objective of this research program was to take a highly multidisciplinary approach to define the biogeochemical factors that control technetium (Tc) mobility in FRC sediments. The aim was to use batch and column studies to probe the biogeochemical conditions that control the mobility of Tc at the FRC. Background sediment samples from Area 2 (pH 6.5, low nitrate, low {sup 99}Tc) and Area 3 (pH 3.5, high nitrate, relatively high {sup 99}Tc) of the FRC were selected (http://www.esd.ornl.gov/nabirfrc). For the batch experiments, sediments were mixed with simulated groundwater, modeled on chemical constituents of FRC waters and supplemented with {sup 99}Tc(VII), both with and without added electron donor (acetate). The solubility of the Tc was monitored, alongside other biogeochemical markers (nitrate, nitrite, Fe(II), sulfate, acetate, pH, Eh) as the 'microcosms' aged. At key points, the microbial communities were also profiled using both cultivation-dependent and molecular techniques, and results correlated with the geochemical conditions in the sediments. The mineral phases present in the sediments were also characterized, and the solid phase associations of the Tc determined using sequential extraction and synchrotron techniques. In addition to the batch sediment experiments, where discrete microbial communities with the potential to reduce and precipitate {sup 99}Tc will be separated in time, we also developed column experiments where biogeochemical processes were spatially separated. Experiments were conducted both with and without amendments proposed to stimulate radionuclide immobilization (e.g. the addition of acetate as an electron donor for metal reduction), and were also planned with and without competing anions at high concentration (e.g. nitrate, with columns containing Area 3 sediments). When the columns had stabilized, as determined by chemical analysis of the effluents, we used a spike of the short-lived gamma emitter {sup 99m}Tc (50

Water, energy, and biogeochemical budgets investigation at Panola Mountain research watershed, Stockbridge, Georgia; a research plan

Science.gov (United States)

Huntington, T.G.; Hooper, R.P.; Peters, N.E.; Bullen, T.D.; Kendall, Carol

1993-01-01

The Panola Mountain Research Watershed (PMRW), located in the Panola Mountain State Conservation Park near Stockbridge, Georgia has been selected as a core research watershed under the Water, Energy and Biogeochemical Budgets (WEBB) research initiative of the U.S. Geological Survey (USGS) Global Climate Change Program. This research plan describes ongoing and planned research activities at PMRW from 1984 to 1994. Since 1984, PMRW has been studied as a geochemical process research site under the U.S. Acid Precipitation Thrust Program. Research conducted under this Thrust Program focused on the estimation of dry atmospheric deposition, short-term temporal variability of streamwater chemistry, sulfate adsorption characteristics of the soils, groundwater chemistry, throughfall chemistry, and streamwater quality. The Acid Precipitation Thrust Program continues (1993) to support data collection and a water-quality laboratory. Proposed research to be supported by the WEBB program is organized in 3 interrelated categories: streamflow generation and water-quality evolution, weathering and geochemical evolution, and regulation of soil-water chemistry. Proposed research on streamflow generation and water-quality evolution will focus on subsurface water movement, its influence in streamflow generation, and the associated chemical changes of the water that take place along its flowpath. Proposed research on weathering and geochemical evolution will identify the sources of cations observed in the streamwater at Panola Mountain and quantify the changes in cation source during storms. Proposed research on regulation of soil-water chemistry will focus on the poorly understood processes that regulate soil-water and groundwater chemistry. (USGS)

Comparison of Satellite Surveying to Traditional Surveying Methods for the Resources Industry

Science.gov (United States)

Osborne, B. P.; Osborne, V. J.; Kruger, M. L.

Modern ground-based survey methods involve detailed survey, which provides three-space co-ordinates for surveyed points, to a high level of accuracy. The instruments are operated by surveyors, who process the raw results to create survey location maps for the subject of the survey. Such surveys are conducted for a location or region and referenced to the earth global co- ordinate system with global positioning system (GPS) positioning. Due to this referencing the survey is only as accurate as the GPS reference system. Satellite survey remote sensing utilise satellite imagery which have been processed using commercial geographic information system software. Three-space co-ordinate maps are generated, with an accuracy determined by the datum position accuracy and optical resolution of the satellite platform.This paper presents a case study, which compares topographic surveying undertaken by traditional survey methods with satellite surveying, for the same location. The purpose of this study is to assess the viability of satellite remote sensing for surveying in the resources industry. The case study involves a topographic survey of a dune field for a prospective mining project area in Pakistan. This site has been surveyed using modern surveying techniques and the results are compared to a satellite survey performed on the same area.Analysis of the results from traditional survey and from the satellite survey involved a comparison of the derived spatial co- ordinates from each method. In addition, comparisons have been made of costs and turnaround time for both methods.The results of this application of remote sensing is of particular interest for survey in areas with remote and extreme environments, weather extremes, political unrest, poor travel links, which are commonly associated with mining projects. Such areas frequently suffer language barriers, poor onsite technical support and resources.

Biogeochemical Modeling of the Second Rise of Oxygen

Science.gov (United States)

Smith, M. L.; Catling, D.; Claire, M.; Zahnle, K.

2014-03-01

The rise of atmospheric oxygen set the tempo for the evolution of complex life on Earth. Oxygen levels are thought to have increased in two broad steps: one step occurred in the Archean ~ 2.45 Ga (the Great Oxidation Event or GOE), and another step occured in the Neoproterozoic ~750-580 Ma (the Neoprotoerozoic Oxygenation Event or NOE). During the NOE, oxygen levels increased from ~1-10% of the present atmospheric level (PAL) (Holland, 2006), to ~15% PAL in the late Neoproterozoic, to ~100% PAL later in the Phanerozoic. Complex life requires O2, so this transition allowed complex life to evolve. We seek to understand what caused the NOE. To explore causes for the NOE, we build upon the biogeochemical model of Claire et al. (2006), which calculates the redox evolution of the atmosphere, ocean, biosphere, and crust in the Archean through to the early Proterozoic. In this model, the balance between oxygenconsuming and oyxgen-producing fluxes evolves over time such that at ~2.4 Ga, the rapidly acting sources of oxygen outweigh the rapidly-acting sinks. Or, in other words, at ~2.4 Ga, the flux of oxygen from organic carbon burial exceeds the sinks of oxygen from reaction with reduced volcanic and metamoprphic gases. The model is able to drive oxygen levels to 1-10% PAL in the Proterozoic; however, the evolving redox fluxes in the model cannot explain how oxygen levels pushed above 1-10% in the late Proterozoic. The authors suggest that perhaps another buffer, such as sulfur, is needed to describe Proterozoic and Phanerozoic redox evolution. Geologic proxies show that in the Proterozoic, up to 10% of the deep ocean may have been sulfidic. With this ocean chemistry, the global sulfur cycle would have worked differently than it does today. Because the sulfur and oxygen cycles interact, the oxygen concentration could have permanently changed due to an evolving sulfur cycle (in combination with evolving redox fluxes associated with other parts of the oxygen cycle and carbon

Pre-treatments, characteristics, and biogeochemical dynamics of dissolved organic matter in sediments: A review.

Science.gov (United States)

Chen, Meilian; Hur, Jin

2015-08-01

Dissolved organic matter (DOM) in sediments, termed here sediment DOM, plays a variety of important roles in global biogeochemical cycling of carbon and nutrients as well as in the fate and transport of xenobiotics. Here we reviewed sediment DOM, including pore waters and water extractable organic matter from inland and coastal sediments, based on recent literature (from 1996 to 2014). Sampling, pre-treatment, and characterization methods for sediment DOM were summarized. The characteristics of sediment DOM have been compared along an inland to coastal ecosystems gradient and also with the overlying DOM in water column to distinguish the unique nature of it. Dissolved organic carbon (DOC) from inland sediment DOM was generally higher than coastal areas, while no notable differences were found for their aromaticity and apparent molecular weight. Fluorescence index (FI) revealed that mixed sources are dominant for inland sediment DOM, but marine end-member prevails for coastal sediment DOM. Many reports showed that sediments operate as a net source of DOC and chromophoric DOM (CDOM) to the water column. Sediment DOM has shown more enrichment of nitrogen- and sulfur-containing compounds in the elemental signature than the overlying DOM. Fluorescent fingerprint investigated by excitation-emission matrix coupled with parallel factor analysis (EEM-PARAFAC) further demonstrated the characteristics of sediment DOM lacking in the photo-oxidized and the intermediate components, which are typically present in the overlying surface water. In addition, the biogeochemical changes in sediment DOM and the subsequent environmental implications were discussed with the focus on the binding and the complexation properties with pollutants. Copyright © 2015 Elsevier Ltd. All rights reserved.

Prototyping global Earth System Models at high resolution: Representation of climate, ecosystems, and acidification in Eastern Boundary Currents

Science.gov (United States)

Dunne, J. P.; John, J. G.; Stock, C. A.

2013-12-01

The world's major Eastern Boundary Currents (EBC) such as the California Current Large Marine Ecosystem (CCLME) are critically important areas for global fisheries. Computational limitations have divided past EBC modeling into two types: high resolution regional approaches that resolve the strong meso-scale structures involved, and coarse global approaches that represent the large scale context for EBCs, but only crudely resolve only the largest scales of their manifestation. These latter global studies have illustrated the complex mechanisms involved in the climate change and acidification response in these regions, with the CCLME response dominated not by local adjustments but large scale reorganization of ocean circulation through remote forcing of water-mass supply pathways. While qualitatively illustrating the limitations of regional high resolution studies in long term projection, these studies lack the ability to robustly quantify change because of the inability of these models to represent the baseline meso-scale structures of EBCs. In the present work, we compare current generation coarse resolution (one degree) and a prototype next generation high resolution (1/10 degree) Earth System Models (ESMs) from NOAA's Geophysical Fluid Dynamics Laboratory in representing the four major EBCs. We review the long-known temperature biases that the coarse models suffer in being unable to represent the timing and intensity of upwelling-favorable winds, along with lack of representation of the observed high chlorophyll and biological productivity resulting from this upwelling. In promising contrast, we show that the high resolution prototype is capable of representing not only the overall meso-scale structure in physical and biogeochemical fields, but also the appropriate offshore extent of temperature anomalies and other EBC characteristics. Results for chlorophyll were mixed; while high resolution chlorophyll in EBCs were strongly enhanced over the coarse resolution

Evaluation of the U.S. Geological Survey Landsat burned area essential climate variable across the conterminous U.S. using commercial high-resolution imagery

Science.gov (United States)

Vanderhoof, Melanie; Brunner, Nicole M.; Beal, Yen-Ju G.; Hawbaker, Todd J.

2017-01-01

The U.S. Geological Survey has produced the Landsat Burned Area Essential Climate Variable (BAECV) product for the conterminous United States (CONUS), which provides wall-to-wall annual maps of burned area at 30 m resolution (1984–2015). Validation is a critical component in the generation of such remotely sensed products. Previous efforts to validate the BAECV relied on a reference dataset derived from Landsat, which was effective in evaluating the product across its timespan but did not allow for consideration of inaccuracies imposed by the Landsat sensor itself. In this effort, the BAECV was validated using 286 high-resolution images, collected from GeoEye-1, QuickBird-2, Worldview-2 and RapidEye satellites. A disproportionate sampling strategy was utilized to ensure enough burned area pixels were collected. Errors of omission and commission for burned area averaged 22 ± 4% and 48 ± 3%, respectively, across CONUS. Errors were lowest across the western U.S. The elevated error of commission relative to omission was largely driven by patterns in the Great Plains which saw low errors of omission (13 ± 13%) but high errors of commission (70 ± 5%) and potentially a region-growing function included in the BAECV algorithm. While the BAECV reliably detected agricultural fires in the Great Plains, it frequently mapped tilled areas or areas with low vegetation as burned. Landscape metrics were calculated for individual fire events to assess the influence of image resolution (2 m, 30 m and 500 m) on mapping fire heterogeneity. As the spatial detail of imagery increased, fire events were mapped in a patchier manner with greater patch and edge densities, and shape complexity, which can influence estimates of total greenhouse gas emissions and rates of vegetation recovery. The increasing number of satellites collecting high-resolution imagery and rapid improvements in the frequency with which imagery is being collected means greater opportunities to utilize these sources

New Potentiometric Wireless Chloride Sensors Provide High Resolution Information on Chemical Transport Processes in Streams

Directory of Open Access Journals (Sweden)

Keith Smettem

2017-07-01

Full Text Available Quantifying the travel times, pathways, and dispersion of solutes moving through stream environments is critical for understanding the biogeochemical cycling processes that control ecosystem functioning. Validation of stream solute transport and exchange process models requires data obtained from in-stream measurement of chemical concentration changes through time. This can be expensive and time consuming, leading to a need for cheap distributed sensor arrays that respond instantly and record chemical transport at points of interest on timescales of seconds. To meet this need we apply new, low-cost (in the order of a euro per sensor potentiometric chloride sensors used in a distributed array to obtain data with high spatial and temporal resolution. The application here is to monitoring in-stream hydrodynamic transport and dispersive mixing of an injected chemical, in this case NaCl. We present data obtained from the distributed sensor array under baseflow conditions for stream reaches in Luxembourg and Western Australia. The reaches were selected to provide a range of increasingly complex in-channel flow patterns. Mid-channel sensor results are comparable to data obtained from more expensive electrical conductivity meters, but simultaneous acquisition of tracer data at several positions across the channel allows far greater spatial resolution of hydrodynamic mixing processes and identification of chemical ‘dead zones’ in the study reaches.

Environmental and biogeochemical changes following a decade's reclamation in the Dapeng (Tapong) Bay, southwestern Taiwan

Science.gov (United States)

Hung, J.-J.; Huang, W.-C.; Yu, C.-S.

2013-09-01

This study examines the environmental and biogeochemical changes in Dapeng (formerly spelled Tapong) Bay, a semi-enclosed coastal lagoon in southwestern Taiwan, after two major reclamation works performed between 1999 and 2010. The lagoon was largely occupied by oyster culture racks and fish farming cages before December, 2002. Substantial external inputs of nutrients and organic carbon and the fairly long water exchange time (τ) (10 ± 2 days) caused the lagoon to enter a eutrophic state, particularly at the inner lagoon, which directly received nutrient inputs. However, the entire lagoon showed autotrophic, and the estimated net ecosystem production (NEP) during the first stage was 5.8 mol C m-2 yr-1. After January, 2003, the aquaculture structures were completely removed, and the τ decreased to 6 ± 2 days. The annual mean concentrations of dissolved oxygen increased, and nutrients decreased substantially, likely due to improved water exchange, absence of feeding and increased biological utilization. The NEP increased 37% to 7.7 mol C m-2 yr-1 after structure removal. The second reclamation work beginning from July, 2006, focused on establishing artificial wetlands for wastewater treatment and on dredging bottom sediment. Although the τ did not change significantly (8 ± 3 days), substantial decreases in nutrient concentrations and dissolved organic matter continued. The NEP (14.3 mol C m-2 yr-1) increased 85% compared to that in the second stage. The data suggest that the reclamations substantially improved water quality, carbon and nutrient biogeochemical processes and budgets in this semi-enclosed ecosystem.

Biogeochemical Impact of Snow Cover and Cyclonic Intrusions on the Winter Weddell Sea Ice Pack

Science.gov (United States)

Tison, J.-L.; Schwegmann, S.; Dieckmann, G.; Rintala, J.-M.; Meyer, H.; Moreau, S.; Vancoppenolle, M.; Nomura, D.; Engberg, S.; Blomster, L. J.; Hendrickx, S.; Uhlig, C.; Luhtanen, A.-M.; de Jong, J.; Janssens, J.; Carnat, G.; Zhou, J.; Delille, B.

2017-12-01

Sea ice is a dynamic biogeochemical reactor and a double interface actively interacting with both the atmosphere and the ocean. However, proper understanding of its annual impact on exchanges, and therefore potentially on the climate, notably suffer from the paucity of autumnal and winter data sets. Here we present the results of physical and biogeochemical investigations on winter Antarctic pack ice in the Weddell Sea (R. V. Polarstern AWECS cruise, June-August 2013) which are compared with those from two similar studies conducted in the area in 1986 and 1992. The winter 2013 was characterized by a warm sea ice cover due to the combined effects of deep snow and frequent warm cyclones events penetrating southward from the open Southern Ocean. These conditions were favorable to high ice permeability and cyclic events of brine movements within the sea ice cover (brine tubes), favoring relatively high chlorophyll-a (Chl-a) concentrations. We discuss the timing of this algal activity showing that arguments can be presented in favor of continued activity during the winter due to the specific physical conditions. Large-scale sea ice model simulations also suggest a context of increasingly deep snow, warm ice, and large brine fractions across the three observational years, despite the fact that the model is forced with a snowfall climatology. This lends support to the claim that more severe Antarctic sea ice conditions, characterized by a longer ice season, thicker, and more concentrated ice are sufficient to increase the snow depth and, somehow counterintuitively, to warm the ice.

Water, Energy, and Biogeochemical Model (WEBMOD), user’s manual, version 1

Science.gov (United States)

Webb, Richard M.T.; Parkhurst, David L.

2017-02-08

The Water, Energy, and Biogeochemical Model (WEBMOD) uses the framework of the U.S. Geological Survey (USGS) Modular Modeling System to simulate fluxes of water and solutes through watersheds. WEBMOD divides watersheds into model response units (MRU) where fluxes and reactions are simulated for the following eight hillslope reservoir types: canopy; snowpack; ponding on impervious surfaces; O-horizon; two reservoirs in the unsaturated zone, which represent preferential flow and matrix flow; and two reservoirs in the saturated zone, which also represent preferential flow and matrix flow. The reservoir representing ponding on impervious surfaces, currently not functional (2016), will be implemented once the model is applied to urban areas. MRUs discharge to one or more stream reservoirs that flow to the outlet of the watershed. Hydrologic fluxes in the watershed are simulated by modules derived from the USGS Precipitation Runoff Modeling System; the National Weather Service Hydro-17 snow model; and a topography-driven hydrologic model (TOPMODEL). Modifications to the standard TOPMODEL include the addition of heterogeneous vertical infiltration rates; irrigation; lateral and vertical preferential flows through the unsaturated zone; pipe flow draining the saturated zone; gains and losses to regional aquifer systems; and the option to simulate baseflow discharge by using an exponential, parabolic, or linear decrease in transmissivity. PHREEQC, an aqueous geochemical model, is incorporated to simulate chemical reactions as waters evaporate, mix, and react within the various reservoirs of the model. The reactions that can be specified for a reservoir include equilibrium reactions among water; minerals; surfaces; exchangers; and kinetic reactions such as kinetic mineral dissolution or precipitation, biologically mediated reactions, and radioactive decay. WEBMOD also simulates variations in the concentrations of the stable isotopes deuterium and oxygen-18 as a result of

Pb, Cd, Cu and Zn biogeochemical behaviour and biological transfer processes in the Northwestern Mediterranean

International Nuclear Information System (INIS)

Nicolas, E.; Marty, J.C.; Miquel, J.C.; Fowler, S.W.

1999-01-01

Cd, Pb, Cu and Zn concentrations were determined in planktonic organisms (Salps, copepods), their associated faecal pellets and in particles collected at 200 and 2000 m depth in sediment traps moored in the Ligurian Sea. Al and P were also measured and taken as tracers of lithogenic and biogenic components, respectively. The aim of this work was to determine the fluxes of trace metals in the Ligurian Sea and their variations with depth, and to to assess the biogeochemical behaviour of elements having, for some of them, an anthropogenic origin, by the study of biologically-mediated uptake and removal processes

Growth and element flux at fine taxonomic resolution in natural microbial communities

Science.gov (United States)

Hungate, Bruce; Mau, Rebecca; Schwartz, Egbert; Caporaso, J. Gregory; Dijkstra, Paul; van Gestel, Natasja; Koch, Benjamin J.; Liu, Cindy M.; McHugh, Theresa; Marks, Jane C.; Morrissey, Ember; Price, Lance B.

2015-04-01

Microorganisms are the engines of global biogeochemical cycles, driving half of all photosynthesis and nearly all decomposition. Yet, quantifying the rates at which uncultured microbial taxa grow and transform elements in intact and highly diverse natural communities in the environment remains among the most pressing challenges in microbial ecology today. Here, we show how shifts in the density of DNA caused by stable isotope incorporation can be used to estimate the growth rates of individual bacterial taxa in intact soil communities. We found that the distribution of growth rates followed the familiar lognormal distribution observed for the abundances, biomasses, and traits of many organisms. Growth rates of most bacterial taxa increased in response to glucose amendment, though the increase in growth observed for many taxa was larger than could be explained by direct utilization of the added glucose for growth, illustrating that glucose addition indirectly stimulated the utilization of other substrates. Variation in growth rates and phylogenetic distances were quantitatively related, connecting evolutionary history and biogeochemical function in intact soil microbial communities. Our approach has the potential to identify biogeochemically significant taxa in the microbial community and quantify their contributions to element transformations and ecosystem processes.

Geochemical variability of soils and biogeochemical variability of plants in the Piceance Basin, Colorado

Science.gov (United States)

Tuttle, M.L.; Severson, R.C.; Dean, W.E.; Klusman, R.W.

1986-01-01

Geochemical baselines for native soils and biogeochemical baselines for plants in the Piceance basin provide data that can be used to assess geochemical and biogeochemical effects of oil-shale development, monitor changes in the geochemical and biogeochemical environment during development, and assess the degree of success of rehabilitation of native materials after development. Baseline values for 52 properties in native soils, 15 properties in big sagebrush, and 13 properties in western wheatgrass were established. Our Study revealed statistically significant regional variations of the following properties across the basin: in soil&-aluminum, cobalt, copper, iron, manganese, sodium, nickel, phosphorus, lead, scandium, titanium, vanadium, zinc, organic and total carbon, pH, clay, dolomite, sodium feldspar, and DTPA-extractable calcium, cadmium, iron, potassium, manganese, nickel, phosphorus, yttrium, and zinc; in big sagebrush-barium, calcium, copper, magnesium, molybdenum, sodium, strontium, zinc, and ash; and in western wheatgrass-boron, barium, calcium, magnesium, manganese, molybdenum, strontium, zinc, and ash. These variations show up as north-south trends across the basin, or they reflect differences in elevation, hydrology, and soil parent material. Baseline values for properties that do not have statistically significant regional variations can be represented by geometric means and deviations calculated from all values within the basin. Chemical and mineralogical analyses of soil and chemical analyses of western wheatgrass samples from Colorado State University's experimental revegetation plot at Anvil Points provide data useful in assessing potential effects on soil and plant properties when largescale revegetation operations begin. The concentrations of certain properties are related to the presence of topsoil over spent shale in the lysimeters. In soils, calcium, fluorine, lithium, magnesium, sodium, phosphorus, strontium, carbonate and total carbon

Biogeochemical aspects of uranium mineralization, mining, milling, and remediation

Science.gov (United States)

Campbell, Kate M.; Gallegos, Tanya J.; Landa, Edward R.

2015-01-01

Natural uranium (U) occurs as a mixture of three radioactive isotopes: 238U, 235U, and 234U. Only 235U is fissionable and makes up about 0.7% of natural U, while 238U is overwhelmingly the most abundant at greater than 99% of the total mass of U. Prior to the 1940s, U was predominantly used as a coloring agent, and U-bearing ores were mined mainly for their radium (Ra) and/or vanadium (V) content; the bulk of the U was discarded with the tailings (Finch et al., 1972). Once nuclear fission was discovered, the economic importance of U increased greatly. The mining and milling of U-bearing ores is the first step in the nuclear fuel cycle, and the contact of residual waste with natural water is a potential source of contamination of U and associated elements to the environment. Uranium is mined by three basic methods: surface (open pit), underground, and solution mining (in situ leaching or in situ recovery), depending on the deposit grade, size, location, geology and economic considerations (Abdelouas, 2006). Solid wastes at U mill tailings (UMT) sites can include both standard tailings (i.e., leached ore rock residues) and solids generated on site by waste treatment processes. The latter can include sludge or “mud” from neutralization of acidic mine/mill effluents, containing Fe and a range of coprecipitated constituents, or barium sulfate precipitates that selectively remove Ra (e.g., Carvalho et al., 2007). In this chapter, we review the hydrometallurgical processes by which U is extracted from ore, the biogeochemical processes that can affect the fate and transport of U and associated elements in the environment, and possible remediation strategies for site closure and aquifer restoration.This paper represents the fourth in a series of review papers from the U.S. Geological Survey (USGS) on geochemical aspects of UMT management that span more than three decades. The first paper (Landa, 1980) in this series is a primer on the nature of tailings and radionuclide

The High Time Resolution Universe Pulsar Survey - XII. Galactic plane acceleration search and the discovery of 60 pulsars

Science.gov (United States)

Ng, C.; Champion, D. J.; Bailes, M.; Barr, E. D.; Bates, S. D.; Bhat, N. D. R.; Burgay, M.; Burke-Spolaor, S.; Flynn, C. M. L.; Jameson, A.; Johnston, S.; Keith, M. J.; Kramer, M.; Levin, L.; Petroff, E.; Possenti, A.; Stappers, B. W.; van Straten, W.; Tiburzi, C.; Eatough, R. P.; Lyne, A. G.

2015-07-01

We present initial results from the low-latitude Galactic plane region of the High Time Resolution Universe pulsar survey conducted at the Parkes 64-m radio telescope. We discuss the computational challenges arising from the processing of the terabyte-sized survey data. Two new radio interference mitigation techniques are introduced, as well as a partially coherent segmented acceleration search algorithm which aims to increase our chances of discovering highly relativistic short-orbit binary systems, covering a parameter space including potential pulsar-black hole binaries. We show that under a constant acceleration approximation, a ratio of data length over orbital period of ≈0.1 results in the highest effectiveness for this search algorithm. From the 50 per cent of data processed thus far, we have redetected 435 previously known pulsars and discovered a further 60 pulsars, two of which are fast-spinning pulsars with periods less than 30 ms. PSR J1101-6424 is a millisecond pulsar whose heavy white dwarf (WD) companion and short spin period of 5.1 ms indicate a rare example of full-recycling via Case A Roche lobe overflow. PSR J1757-27 appears to be an isolated recycled pulsar with a relatively long spin period of 17 ms. In addition, PSR J1244-6359 is a mildly recycled binary system with a heavy WD companion, PSR J1755-25 has a significant orbital eccentricity of 0.09 and PSR J1759-24 is likely to be a long-orbit eclipsing binary with orbital period of the order of tens of years. Comparison of our newly discovered pulsar sample to the known population suggests that they belong to an older population. Furthermore, we demonstrate that our current pulsar detection yield is as expected from population synthesis.

Understanding oceanic migrations with intrinsic biogeochemical markers.

Directory of Open Access Journals (Sweden)

Raül Ramos

2009-07-01

Full Text Available Migratory marine vertebrates move annually across remote oceanic water masses crossing international borders. Many anthropogenic threats such as overfishing, bycatch, pollution or global warming put millions of marine migrants at risk especially during their long-distance movements. Therefore, precise knowledge about these migratory movements to understand where and when these animals are more exposed to human impacts is vital for addressing marine conservation issues. Because electronic tracking devices suffer from several constraints, mainly logistical and financial, there is emerging interest in finding appropriate intrinsic markers, such as the chemical composition of inert tissues, to study long-distance migrations and identify wintering sites. Here, using tracked pelagic seabirds and some of their own feathers which were known to be grown at different places and times within the annual cycle, we proved the value of biogeochemical analyses of inert tissue as tracers of marine movements and habitat use. Analyses of feathers grown in summer showed that both stable isotope signatures and element concentrations can signal the origin of breeding birds feeding in distinct water masses. However, only stable isotopes signalled water masses used during winter because elements mainly accumulated during the long breeding period are incorporated into feathers grown in both summer and winter. Our findings shed new light on the simple and effective assignment of marine organisms to distinct oceanic areas, providing new opportunities to study unknown migration patterns of secretive species, including in relation to human-induced mortality on specific populations in the marine environment.

Biogeochemical and isotopic gradients in a BTEX/PAH contaminant plume: Model-based interpretation of a high-resolution field data set

DEFF Research Database (Denmark)

Prommer, H.; Anneser, B.; Rolle, Massimo

2009-01-01

of toluene, which is the most rapidly degrading compound and the most important reductant at the site. The resulting depth profiles at the observation well show distinct differences between the small isotopic enrichment in the contaminant plume core and the much stronger enrichment of up to 3.3 parts per......A high spatial resolution data set documenting carbon and sulfur isotope fractionation at a tar oil-contaminated, sulfate-reducing field site was analyzed with a reactive transport model. Within a comprehensive numerical model, the study links the distinctive observed isotope depth profiles...... with the degradation of various monoaromatic and polycyclic aromatic hydrocarbon compounds (BTEX/PAHs) under sulfate-reducing conditions. In the numerical model, microbial dynamics were simulated explicitly and isotope fractionation was directly linked to the differential microbial uptake of lighter and heavier carbon...

SMART-X: Square Meter, Arcsecond Resolution Telescope for X-rays

Science.gov (United States)

Vikhlinin, Alexey; SMART-X Collaboration

2013-04-01

SMART-X is a concept for a next-generation X-ray observatory with large-area, 0.5" angular resolution grazing incidence adjustable X-ray mirrors, high-throughput critical angle transmission gratings, and X-ray microcalorimeter and CMOS-based imager in the focal plane. High angular resolution is enabled by new technology based on controlling the shape of mirror segments using thin film piezo actuators deposited on the back surface. Science applications include observations of growth of supermassive black holes since redshifts of ~10, ultra-deep surveys over 10's of square degrees, galaxy assembly at z=2-3, as well as new opportunities in the high-resolution X-ray spectroscopy and time domains. We also review the progress in technology development, tests, and mission design over the past year.

The role of industrial nitrogen in the global nitrogen biogeochemical cycle

Science.gov (United States)

Gu, Baojing; Chang, Jie; Min, Yong; Ge, Ying; Zhu, Qiuan; Galloway, James N.; Peng, Changhui

2013-01-01

Haber-Bosch nitrogen (N) has been increasingly used in industrial products, e.g., nylon, besides fertilizer. Massive numbers of species of industrial reactive N (Nr) have emerged and produced definite consequences but receive little notice. Based on a comprehensive inventory, we show that (1) the industrial N flux has increased globally from 2.5 to 25.4 Tg N yr−1 from 1960 through 2008, comparable to the NOx emissions from fossil fuel combustion; (2) more than 25% of industrial products (primarily structural forms, e.g., nylon) tend to accumulate in human settlements due to their long service lives; (3) emerging Nr species define new N-assimilation and decomposition pathways and change the way that Nr is released to the environment; and (4) the loss of these Nr species to the environment has significant negative human and ecosystem impacts. Incorporating industrial Nr into urban environmental and biogeochemical models could help to advance urban ecology and environmental sciences. PMID:23999540

Organochlorine compounds and the biogeochemical cycle of chlorine in soils: A review

Science.gov (United States)

Vodyanitskii, Yu. N.; Makarov, M. I.

2017-09-01

Chloride ions in soil may interact with soil organic matter and form organochlorine compounds in situ. The biotic chlorination of soil organic substances takes places under aerobic conditions with participation of H2O2 forming from peroxidases released by soil microorganisms (in particular, by microscopic fungi). The abiotic chlorination results also from the redox reactions with the participation of Fe3+/Fe2+ system, but it develops several times slower. Chlorination of soil organic substances is favored by Cl- coming to soil both from natural (salinized soil-forming rocks and groundwater, sea salt) and anthropogenic sources of chlorides, i.e., spills of saline water at oil production, road deicing chemicals, mineral fertilizers, etc. The study of the biogeochemical chlorine cycle should take into account the presence of organochlorine compounds in soils, in addition to transformation and migration of chloride ions.

Links between contaminant hotspots in low flow estuarine systems and altered sediment biogeochemical processes

Science.gov (United States)

Sutherland, Michael D.; Dafforn, Katherine A.; Scanes, Peter; Potts, Jaimie; Simpson, Stuart L.; Sim, Vivian X. Y.; Johnston, Emma L.

2017-11-01

The urbanisation of coastal zones is a major threat to the health of global estuaries and has been linked to increased contamination (e.g. metals) and excess organic matter. Urban stormwater networks collect and funnel contaminants into waterways at point sources (e.g. stormdrains). Under dry, low flow conditions, these stormwater contaminants can accumulate in sediments over time and result in modifications to benthic sediment biogeochemical processes. To quantify these processes, this field study measured differences in benthic metabolism (CR, GPP, NEM) and sediment-water nutrient fluxes (NH3, NOx, PO4) associated with stormdrains (0 m, 200 m and 1000 m away) and increased water-retention (embayments vs channels). Significant changes to benthic metabolism were detected with distance from stormdrains, and with differences in water-retention rates, above natural spatial and temporal variation. Oxygen consumption was ∼50% higher at stormdrains (0 m) compared to 1000 m away and >70% higher at stormdrains (0 m) located in embayments compared to channels. Oxygen production also appeared to decrease with distance from stormdrains in embayments, but patterns were variable. These changes to benthic metabolism were of a magnitude expected to influence benthic nutrient cycling, but NH3, NOx and PO4 fluxes were generally low, and highly spatially and temporally variable. Overall, metal (Cu) contamination explained most of the variation in sediment biogeochemical processes between embayments and channels, while sediment grain size explained differences in fluxes with distance from stormdrains. Importantly, although there was evidence of increased productivity associated with stormdrains, we also detected evidence of early hypoxia suggesting that systems with legacy stormwater contaminants exist on a tipping point. Future work should investigate changes to sediment processes after a major rainfall event, when large and sudden inputs of potentially toxic contaminants occur

High spatial variability in biogeochemical rates and microbial communities across Louisiana salt marsh landscapes

Science.gov (United States)

Roberts, B. J.; Chelsky, A.; Bernhard, A. E.; Giblin, A. E.

2017-12-01

Salt marshes are important sites for retention and transformation of carbon and nutrients. Much of our current marsh biogeochemistry knowledge is based on sampling at times and in locations that are convenient, most often vegetated marsh platforms during low tide. Wetland loss rates are high in many coastal regions including Louisiana which has the highest loss rates in the US. This loss not only reduces total marsh area but also changes the relative allocation of subhabitats in the remaining marsh. Climate and other anthropogenic changes lead to further changes including inundation patterns, redox conditions, salinity regimes, and shifts in vegetation patterns across marsh landscapes. We present results from a series of studies examining biogeochemical rates, microbial communities, and soil properties along multiple edge to interior transects within Spartina alterniflora across the Louisiana coast; between expanding patches of Avicennia germinans and adjacent S. alterniflora marshes; in soils associated with the four most common Louisiana salt marsh plants species; and across six different marsh subhabitats. Spartina alterniflora marsh biogeochemistry and microbial populations display high spatial variability related to variability in soil properties which appear to be, at least in part, regulated by differences in elevation, hydrology, and redox conditions. Differences in rates between soils associated with different vegetation types were also related to soil properties with S. alterniflora soils often yielding the lowest rates. Biogeochemical process rates vary significantly across marsh subhabitats with individual process rates differing in their hotspot habitat(s) across the marsh. Distinct spatial patterns may influence the roles that marshes play in retaining and transforming nutrients in coastal regions and highlight the importance of incorporating spatial sampling when scaling up plot level measurements to landscape or regional scales.

The Anthropogenic Effects of Hydrocarbon Inputs to Coastal Seas: Are There Potential Biogeochemical Impacts?

Science.gov (United States)

Anderson, M. R.; Rivkin, R. B.

2016-02-01

Petroleum hydrocarbon discharges related to fossil fuel exploitation have the potential to alter microbial processes in the upper ocean. While the ecotoxicological effects of such inputs are commonly evaluated, the potential for eutrophication from the constituent organic and inorganic nutrients has been largely ignored. Hydrocarbons from natural seeps and anthropogenic sources represent a measurable source of organic carbon for surface waters. The most recent (1989-1997) estimate of average world-wide input of hydrocarbons to the sea is 1.250 x 1012 g/yr ≈ 1.0 x 1012g C/year. Produced water from offshore platforms is the largest waste stream from oil and gas exploitation and contributes significant quantities of inorganic nutrients such as N, P and Fe. In coastal areas where such inputs are a significant source of these nutrients, model studies show the potential to shift production toward smaller cells and net heterotrophy. The consequences of these nutrient sources for coastal systems and semi enclosed seas are complex and difficult to predict, because (1) there is a lack of comprehensive data on inputs and in situ concentrations and (2) the is no conceptual or quantitative framework to consider their effects on ocean biogeochemical processes. Here we use examples from the North Sea (produced water discharges 1% total riverine input and NH4 3% of the annual riverine nitrogen load), the South China Sea (total petroleum hydrocarbons = 10-1750 μg/l in offshore waters), and the Gulf of Mexico (seeps = 76-106 x 109 gC/yr, Macondo blowout 545 x 109 gC) to demonstrate how hydrocarbon and produced water inputs can influence basin scale biogeochemical and ecosystem processes and to propose a framework to consider these effects on larger scales.

The influence of tides on biogeochemical dynamics at the mouth of the Amazon River

Science.gov (United States)

Ward, N. D.; Sawakuchi, H. O.; Neu, V.; de Matos Valerio, A.; Less, D.; Guedes, V.; Wood, J.; Brito, D. C.; Cunha, A. C.; Kampel, M.; Richey, J. E.

2017-12-01

A major barrier to computing the flux of constituents from the world's largest rivers to the ocean is understanding the dynamic processes that occur along tidally-influenced river reaches. Here, we examine the response of a suite of biogeochemical parameters to tide-induced flow reversals at the mouth of the Amazon River. Continuous measurements of pCO2, pCH4, dissolved O2, pH, turbidity, and fluorescent dissolved organic matter (FDOM) were made throughout tidal cycles while held stationary in the center of the river and during hourly transects for ADCP discharge measurements. Samples were collected hourly from the surface and 50% depth during stationary samplings and from the surface during ADCP transects for analysis of suspended sediment concentrations along with other parameters such as nutrient and mercury concentrations. Suspended sediment and specific components of the suspended phase, such as particulate mercury, concentrations were positively correlated to mean river velocity during both high and low water periods with a more pronounced response at 50% depth than the surface. Tidal variations also influenced the concentration of O2 and CO2 by altering the dynamic balance between photosynthesis, respiration, and gas transfer. CO2 was positively correlated and O2 and pH were negatively correlated with river velocity. The concentration of methane generally increased during low tide (i.e. when river water level was lowest) both in the mainstem and in small side channels. In side channels concentrations increased by several orders of magnitude during low tide with visible bubbling from the sediment, presumably due to a release of hydrostatic pressure. These results suggest that biogeochemical processes are highly dynamic in tidal rivers, and these dynamic variations need to be quantified to better constrain global and regional scale budgets. Understanding these rapid processes may also provide insight into the long-term response of aquatic systems to change.

High-resolution subsurface imaging and neural network recognition: Non-intrusive buried substance location. Final report

Energy Technology Data Exchange (ETDEWEB)

Sternberg, B.K.; Poulton, M.M.

1997-01-26

A high-frequency, high-resolution electromagnetic (EM) imaging system has been developed for environmental geophysics surveys. Some key features of this system include: (1) rapid surveying to allow dense spatial sampling over a large area, (2) high-accuracy measurements which are used to produce a high-resolution image of the subsurface, (3) measurements which have excellent signal-to-noise ratio over a wide bandwidth (31 kHz to 32 MHz), (4) elimination of electric-field interference at high frequencies, (5) large-scale physical modeling to produce accurate theoretical responses over targets of interest in environmental geophysics surveys, (6) rapid neural network interpretation at the field site, and (7) visualization of complex structures during the survey. Four major experiments were conducted with the system: (1) Data were collected for several targets in our physical modeling facility. (2) The authors tested the system over targets buried in soil. (3) The authors conducted an extensive survey at the Idaho National Engineering Laboratory (INEL) Cold Test Pit (CTP). The location of the buried waste, category of waste, and thickness of the clay cap were successfully mapped. (4) The authors ran surveys over the acid pit at INEL. This was an operational survey over a hot site. The interpreted low-resistivity region correlated closely with the known extent of the acid pit.

High-resolution subsurface imaging and neural network recognition: Non-intrusive buried substance location. Final report

International Nuclear Information System (INIS)

Sternberg, B.K.; Poulton, M.M.

1997-01-01

A high-frequency, high-resolution electromagnetic (EM) imaging system has been developed for environmental geophysics surveys. Some key features of this system include: (1) rapid surveying to allow dense spatial sampling over a large area, (2) high-accuracy measurements which are used to produce a high-resolution image of the subsurface, (3) measurements which have excellent signal-to-noise ratio over a wide bandwidth (31 kHz to 32 MHz), (4) elimination of electric-field interference at high frequencies, (5) large-scale physical modeling to produce accurate theoretical responses over targets of interest in environmental geophysics surveys, (6) rapid neural network interpretation at the field site, and (7) visualization of complex structures during the survey. Four major experiments were conducted with the system: (1) Data were collected for several targets in our physical modeling facility. (2) The authors tested the system over targets buried in soil. (3) The authors conducted an extensive survey at the Idaho National Engineering Laboratory (INEL) Cold Test Pit (CTP). The location of the buried waste, category of waste, and thickness of the clay cap were successfully mapped. (4) The authors ran surveys over the acid pit at INEL. This was an operational survey over a hot site. The interpreted low-resistivity region correlated closely with the known extent of the acid pit

Structure and Evolution of Hawaii's Loihi Seamount from High-resolution Mapping

Science.gov (United States)

Clague, D. A.; Paduan, J. B.; Moyer, C. L.; Glazer, B. T.; Caress, D. W.; Yoerger, D.; Kaiser, C. L.

2016-12-01

Loihi Seamount has been mapped repeatedly using shipboard multibeam sonars with improving resolution over time. Simrad EM302 data with 25m resolution at the 950m summit and 90m at the 5000m base of the volcano were collected from Schmidt Ocean Institute's R/V Falkor in 2014. A contracted multibeam survey in 1997 employing a deep-towed vehicle has 7m resolution for the summit and upper north and south rift zones, but suffered from poor navigation. Woods Hole Oceanographic Institution's AUV Sentry surveyed most of the summit and low-T hydrothermal vents on the base of the south rift in 2013 and 2014. The 2m resolution of most data is more precise than the navigation. The 6 summit surveys were reprocessed using MB-System to remove abundant bad bottom picks and adjust the navigation to produce a spatially accurate map. The 3 summit pits, including Pele's Pit that formed in 1996, are complex collapse structures and nested inside a larger caldera that was modified by large landslides on the east and west summit flanks. The pits cut low shields that once formed a complex of overlapping summit shields, similar to Kilauea before the current caldera formed 1500 to 1790 CE. An 11m section of ash deposits crops out on the east rim of the summit along a caldera-bounding fault and is analogous to Kilauea where the caldera-bounding faults expose ash erupted as the present caldera formed. Most of the Loihi ash section is 3300 to 5880 yr BP, indicating that the larger caldera structure at Loihi is younger than 3300 yr BP. The landslides on the east and west edges of the summit are therefore younger 3300 yr BP. The uppermost south rift has several small pit craters between cones and pillow ridges, also analogous to Kilauea. Two cones near the deep low-T vents are steep pillow mounds with slopes of talus. High-resolution mapping reveals, for the first time, the many similarities between the structure and evolution of submarine Loihi Seamount and subaerial Kilauea Volcano.

HIGH-RESOLUTION IMAGING OF THE ATLBS REGIONS: THE RADIO SOURCE COUNTS

Energy Technology Data Exchange (ETDEWEB)

Thorat, K.; Subrahmanyan, R.; Saripalli, L.; Ekers, R. D., E-mail: kshitij@rri.res.in [Raman Research Institute, C. V. Raman Avenue, Sadashivanagar, Bangalore 560080 (India)

2013-01-01

The Australia Telescope Low-brightness Survey (ATLBS) regions have been mosaic imaged at a radio frequency of 1.4 GHz with 6'' angular resolution and 72 {mu}Jy beam{sup -1} rms noise. The images (centered at R.A. 00{sup h}35{sup m}00{sup s}, decl. -67 Degree-Sign 00'00'' and R.A. 00{sup h}59{sup m}17{sup s}, decl. -67 Degree-Sign 00'00'', J2000 epoch) cover 8.42 deg{sup 2} sky area and have no artifacts or imaging errors above the image thermal noise. Multi-resolution radio and optical r-band images (made using the 4 m CTIO Blanco telescope) were used to recognize multi-component sources and prepare a source list; the detection threshold was 0.38 mJy in a low-resolution radio image made with beam FWHM of 50''. Radio source counts in the flux density range 0.4-8.7 mJy are estimated, with corrections applied for noise bias, effective area correction, and resolution bias. The resolution bias is mitigated using low-resolution radio images, while effects of source confusion are removed by using high-resolution images for identifying blended sources. Below 1 mJy the ATLBS counts are systematically lower than the previous estimates. Showing no evidence for an upturn down to 0.4 mJy, they do not require any changes in the radio source population down to the limit of the survey. The work suggests that automated image analysis for counts may be dependent on the ability of the imaging to reproduce connecting emission with low surface brightness and on the ability of the algorithm to recognize sources, which may require that source finding algorithms effectively work with multi-resolution and multi-wavelength data. The work underscores the importance of using source lists-as opposed to component lists-and correcting for the noise bias in order to precisely estimate counts close to the image noise and determine the upturn at sub-mJy flux density.

Investigating the Effects of Land Cover Change on the Hydrology of the Mississippi River Basin

Science.gov (United States)

Twine, T. E.; Coe, M. T.; Lenters, J. D.; Kucharik, C. J.; Donner, S.; Foley, J. A.

2001-12-01

Humans have greatly altered the Earth's landscape since the beginning of sedentary agriculture. Through the conversion of forests and grasslands to croplands and pasture, human land use activities have changed biogeochemical cycles including the water cycle. Using IBIS, a global land surface model with 0.5-degree resolution (Foley et al., 1996; Kucharik et al., 2000), and HYDRA, a runoff-routing algorithm with 5-minute resolution (Coe, 2000), we have studied how land cover change may affect the hydrology of the Mississippi River Basin. The IBIS model describes physical, physiological, and ecological processes occurring in vegetative canopies and soils. Through forcing from climate data and vegetation and soil properties, IBIS simulates energy, water, and biogeochemical cycles at small time-steps (30-60 minutes). Lenters et al. (2000) have validated the IBIS-modeled water budget over the Mississippi River Basin at several scales and HYDRA-modeled discharge has been compared favorably to United States Geological Survey stream gauge data (Donner et al., 2001). This work extends those studies through use of an improved version of IBIS. The IBIS model has been calibrated for use over the continental United States through an improved phenology routine and the inclusion of corn and soybeans as land cover types. Results from a comparison of a control run of natural vegetation with experimental runs of corn and soybean cover will be shown.

MMT hypervelocity star survey. III. The complete survey

Energy Technology Data Exchange (ETDEWEB)

Brown, Warren R.; Geller, Margaret J.; Kenyon, Scott J., E-mail: wbrown@cfa.harvard.edu, E-mail: mgeller@cfa.harvard.edu, E-mail: skenyon@cfa.harvard.edu [Smithsonian Astrophysical Observatory, 60 Garden Street, Cambridge, MA 02138 (United States)

2014-05-20

We describe our completed spectroscopic survey for unbound hypervelocity stars (HVSs) ejected from the Milky Way. Three new discoveries bring the total number of unbound late B-type stars to 21. We place new constraints on the nature of the stars and on their distances using moderate resolution MMT spectroscopy. Half of the stars are fast rotators; they are certain 2.5-4 M {sub ☉} main sequence stars at 50-120 kpc distances. Correcting for stellar lifetime, our survey implies that unbound 2.5-4 M {sub ☉} stars are ejected from the Milky Way at a rate of 1.5 × 10{sup –6} yr{sup –1}. These unbound HVSs are likely ejected continuously over the past 200 Myr and do not share a common flight time. The anisotropic spatial distribution of HVSs on the sky remains puzzling. Southern hemisphere surveys like SkyMapper will soon allow us to map the all-sky distribution of HVSs. Future proper motion measurements with Hubble Space Telescope and Gaia will provide strong constraints on origin. Existing observations are all consistent with HVS ejections from encounters with the massive black hole in the Galactic center.

MMT hypervelocity star survey. III. The complete survey

International Nuclear Information System (INIS)

Brown, Warren R.; Geller, Margaret J.; Kenyon, Scott J.

2014-01-01

We describe our completed spectroscopic survey for unbound hypervelocity stars (HVSs) ejected from the Milky Way. Three new discoveries bring the total number of unbound late B-type stars to 21. We place new constraints on the nature of the stars and on their distances using moderate resolution MMT spectroscopy. Half of the stars are fast rotators; they are certain 2.5-4 M ☉ main sequence stars at 50-120 kpc distances. Correcting for stellar lifetime, our survey implies that unbound 2.5-4 M ☉ stars are ejected from the Milky Way at a rate of 1.5 × 10 –6 yr –1 . These unbound HVSs are likely ejected continuously over the past 200 Myr and do not share a common flight time. The anisotropic spatial distribution of HVSs on the sky remains puzzling. Southern hemisphere surveys like SkyMapper will soon allow us to map the all-sky distribution of HVSs. Future proper motion measurements with Hubble Space Telescope and Gaia will provide strong constraints on origin. Existing observations are all consistent with HVS ejections from encounters with the massive black hole in the Galactic center.

Abiotic and biotic controls over biogeochemical cycles in drylands: Insights from climate change and nitrogen deposition experiments on the Colorado Plateau

Science.gov (United States)

Reed, S.; Ferrenberg, S.; Tucker, C.; Rutherford, W. A.; Wertin, T. M.; McHugh, T. A.; Morrissey, E.; Kuske, C.; Mueller, R.; Belnap, J.

2016-12-01

As for all ecosystems, biogeochemical cycling in drylands represents numerous intricate connections between biotic and abiotic controls. However, patterns of many fundamental ecosystem processes that generally hold across global gradients fall apart at the arid and semiarid end of the spectrum, and data point to an exceptionally strong role for abiotic controls in explaining these patterns. Further, there are multiple dryland characteristics - such as extreme aridity and high UV radiation, as well as specialized biological communities - which can point to a conclusion that "drylands are different". Indeed, drylands are often characterized by their harsh environment, by the diverse classes of biota representing a range of traits aimed at surviving such harsh conditions, and, more recently, by the suggestion of dramatic biotic responses to seemingly subtle changes in abiotic factors. In this talk, we will explore a range of biotic and abiotic controls over fundamental biogeochemical cycling in drylands using data from a suite of manipulation experiments on the Colorado Plateau, USA. We will present results from field treatments that speak to the effects of increasing temperature, altered precipitation regimes, increased nitrogen availability via deposition, and the effects of altered litterfall inputs. Biogeochemical processes we explore will include plant photosynthesis, soil photosynthesis and respiration (with a focus on biological soil crusts), litter decomposition, and nutrient cycling. In addition, we will assess how treatments alter dryland community composition, as well as the resultant feedbacks of community shifts to environmental change. Taken together we will use these diverse datasets to ask questions about what makes drylands different or, instead, if a holistic joining of biotic and abiotic perspectives suggests they are not so different after all. These data will not only lend insight into the partitioning of and balance between biotic and abiotic

Assessing subaqueous mudslide hazard on the Mississippi River delta front, Part 2: Insights revealed through high-resolution geophysical surveying

Science.gov (United States)

Obelcz, J.; Xu, K.; Bentley, S. J.; Georgiou, I. Y.; Maloney, J. M.; Miner, M. D.; Hanegan, K.; Keller, G.

2014-12-01

The northern Gulf of Mexico, including the subaqueous Mississippi River delta front (MRDF), has been productive for oil and gas development since the early 1900s. In 1969 cyclic seafloor wave loading associated with the passage of Hurricane Camille triggered subaqueous mudflows across the MRDF, destroying several offshore oil platforms. This incident spurred geophysical and geotechnical studies of the MRDF, which found that the delta front is prone to mass failures on gentle gradients (gas production, and (3) the frequent passage of tropical cyclones. In June 2014, a geophysical pilot study was conducted 8 km southwest of Southwest Pass, the distributary that currently receives the largest fraction of Mississippi River sediment supply. The resultant dataset encompasses 216 km of subbottom Chirp seismic profiles and a 60 km2 grid of bathymetry and sidescan data. Preliminary interpretation of these data shows the survey area can be classified into four primary sedimentary facies: mudflow gullies, mudflow lobes, undisturbed prodelta, and undisturbed delta front. Subbottom profiles reveal extensive biogenic gas from 20 to about 80 m water depths on the delta front; sidescan data show a variety of bottleneck slides, mudflow gullies and mudflow noses. Previous studies have attempted to constrain the periodicity and magnitude of subaqueous mudslides on the MRDF. However, large age gaps and varied resolution between datasets result in ambiguity regarding the cause and magnitude of observed bathymetric changes. We present high-temporal resolution MRDF bathymetric variations from 2005 (post Hurricane Katrina), 2009 (relatively quiescent storm period), and 2014 (post 2011 Mississippi River flood). These data yield better magnitude and timing estimates of mass movements. This exercise represents a first step towards (1) assembling a comprehensive geologic dataset upon which future MRDF geohazard assessments can be founded, and (2) understanding the dynamics of a massive

HIGH RESOLUTION AIRBORNE SHALLOW WATER MAPPING

Directory of Open Access Journals (Sweden)

F. Steinbacher

2012-07-01

Full Text Available In order to meet the requirements of the European Water Framework Directive (EU-WFD, authorities face the problem of repeatedly performing area-wide surveying of all kinds of inland waters. Especially for mid-sized or small rivers this is a considerable challenge imposing insurmountable logistical efforts and costs. It is therefore investigated if large-scale surveying of a river system on an operational basis is feasible by employing airborne hydrographic laser scanning. In cooperation with the Bavarian Water Authority (WWA Weilheim a pilot project was initiated by the Unit of Hydraulic Engineering at the University of Innsbruck and RIEGL Laser Measurement Systems exploiting the possibilities of a new LIDAR measurement system with high spatial resolution and high measurement rate to capture about 70 km of riverbed and foreland for the river Loisach in Bavaria/Germany and the estuary and parts of the shoreline (about 40km in length of lake Ammersee. The entire area surveyed was referenced to classic terrestrial cross-section surveys with the aim to derive products for the monitoring and managing needs of the inland water bodies forced by the EU-WFD. The survey was performed in July 2011 by helicopter and airplane and took 3 days in total. In addition, high resolution areal images were taken to provide an optical reference, offering a wide range of possibilities on further research, monitoring, and managing responsibilities. The operating altitude was about 500 m to maintain eye-safety, even for the aided eye, the airspeed was about 55 kts for the helicopter and 75 kts for the aircraft. The helicopter was used in the alpine regions while the fixed wing aircraft was used in the plains and the urban area, using appropriate scan rates to receive evenly distributed point clouds. The resulting point density ranged from 10 to 25 points per square meter. By carefully selecting days with optimum water quality, satisfactory penetration down to the river

High Resolution Airborne Shallow Water Mapping

Science.gov (United States)

Steinbacher, F.; Pfennigbauer, M.; Aufleger, M.; Ullrich, A.

2012-07-01

In order to meet the requirements of the European Water Framework Directive (EU-WFD), authorities face the problem of repeatedly performing area-wide surveying of all kinds of inland waters. Especially for mid-sized or small rivers this is a considerable challenge imposing insurmountable logistical efforts and costs. It is therefore investigated if large-scale surveying of a river system on an operational basis is feasible by employing airborne hydrographic laser scanning. In cooperation with the Bavarian Water Authority (WWA Weilheim) a pilot project was initiated by the Unit of Hydraulic Engineering at the University of Innsbruck and RIEGL Laser Measurement Systems exploiting the possibilities of a new LIDAR measurement system with high spatial resolution and high measurement rate to capture about 70 km of riverbed and foreland for the river Loisach in Bavaria/Germany and the estuary and parts of the shoreline (about 40km in length) of lake Ammersee. The entire area surveyed was referenced to classic terrestrial cross-section surveys with the aim to derive products for the monitoring and managing needs of the inland water bodies forced by the EU-WFD. The survey was performed in July 2011 by helicopter and airplane and took 3 days in total. In addition, high resolution areal images were taken to provide an optical reference, offering a wide range of possibilities on further research, monitoring, and managing responsibilities. The operating altitude was about 500 m to maintain eye-safety, even for the aided eye, the airspeed was about 55 kts for the helicopter and 75 kts for the aircraft. The helicopter was used in the alpine regions while the fixed wing aircraft was used in the plains and the urban area, using appropriate scan rates to receive evenly distributed point clouds. The resulting point density ranged from 10 to 25 points per square meter. By carefully selecting days with optimum water quality, satisfactory penetration down to the river bed was achieved

Regional-Scale High Spatial Resolution Mapping of Aboveground Net Primary Productivity (ANPP from Field Survey and Landsat Data: A Case Study for the Country of Wales

Directory of Open Access Journals (Sweden)

Emma J. Tebbs

2017-08-01

Full Text Available This paper presents an alternative approach for high spatial resolution vegetation productivity mapping at a regional scale, using a combination of Normalised Difference Vegetation Index (NDVI imagery and widely distributed ground-based Above-ground Net Primary Production (ANPP estimates. Our method searches through all available single-date NDVI imagery to identify the images which give the best NDVI–ANPP relationship. The derived relationships are then used to predict ANPP values outside of field survey plots. This approach enables the use of the high spatial resolution (30 m Landsat 8 sensor, despite its low revisit frequency that is further reduced by cloud cover. This is one of few studies to investigate the NDVI–ANPP relationship across a wide range of temperate habitats and strong relationships were observed (R2 = 0.706, which increased when only grasslands were considered (R2 = 0.833. The strongest NDVI–ANPP relationships occurred during the spring “green-up” period. A reserved subset of 20% of ground-based ANPP estimates was used for validation and results showed that our method was able to estimate ANPP with a RMSE of 15–21%. This work is important because we demonstrate a general methodological framework for mapping of ANPP from local to regional scales, with the potential to be applied to any temperate ecosystems with a pronounced green up period. Our approach allows spatial extrapolation outside of field survey plots to produce a continuous surface product, useful for capturing spatial patterns and representing small-scale heterogeneity, and well-suited for modelling applications. The data requirements for implementing this approach are also discussed.

Latest Results of the SETHI Survey at Arecibo

Science.gov (United States)

Korpela, E. J.; Demorest, P.; Heien, E.; Heiles, C.; Werthimer, D.

2004-10-01

SETH i is a survey of the distribution of galactic neutral hydrogen being performed comensally at the NAIC Arecibo Observatory. At the same time that observers use receivers in the Gregorian dome, SETHi is recording a 2.5MHz band centered at 1420 MHz from a flat feed on Carriage House 1. During normal astronomical observations, the SETH i feed scans across the sky at twice the sidereal rate. During 4 years of observations, we have accumulated over 15,000 hours of data covering most of the sky accessible to Arecibo. This survey has higher angular resolution than existing single dish surveys and higher sensitivity than existing or planned interferometric surveys.

Survey Strategy Optimization for the Atacama Cosmology Telescope

Science.gov (United States)

De Bernardis, F.; Stevens, J. R.; Hasselfield, M.; Alonso, D.; Bond, J. R.; Calabrese, E.; Choi, S. K.; Crowley, K. T.; Devlin, M.; Wollack, E. J.

2016-01-01

In recent years there have been significant improvements in the sensitivity and the angular resolution of the instruments dedicated to the observation of the Cosmic Microwave Background (CMB). ACTPol is the first polarization receiver for the Atacama Cosmology Telescope (ACT) and is observing the CMB sky with arcmin resolution over approximately 2000 square degrees. Its upgrade, Advanced ACTPol (AdvACT), will observe the CMB in five frequency bands and over a larger area of the sky. We describe the optimization and implementation of the ACTPol and AdvACT surveys. The selection of the observed fields is driven mainly by the science goals, that is, small angular scale CMB measurements, B-mode measurements and cross-correlation studies. For the ACTPol survey we have observed patches of the southern galactic sky with low galactic foreground emissions which were also chosen to maximize the overlap with several galaxy surveys to allow unique cross-correlation studies. A wider field in the northern galactic cap ensured significant additional overlap with the BOSS spectroscopic survey. The exact shapes and footprints of the fields were optimized to achieve uniform coverage and to obtain cross-linked maps by observing the fields with different scan directions. We have maximized the efficiency of the survey by implementing a close to 24-hour observing strategy, switching between daytime and nighttime observing plans and minimizing the telescope idle time. We describe the challenges represented by the survey optimization for the significantly wider area observed by AdvACT, which will observe roughly half of the low-foreground sky. The survey strategies described here may prove useful for planning future ground-based CMB surveys, such as the Simons Observatory and CMB Stage IV surveys.

Simulation of glacial ocean biogeochemical tracer and isotope distributions based on the PMIP3 suite of climate models

Science.gov (United States)

Khatiwala, Samar; Muglia, Juan; Kvale, Karin; Schmittner, Andreas

2016-04-01

In the present climate system, buoyancy forced convection at high-latitudes together with internal mixing results in a vigorous overturning circulation whose major component is North Atlantic Deep Water. One of the key questions of climate science is whether this "mode" of circulation persisted during glacial periods, and in particular at the Last Glacial Maximum (LGM; 21000 years before present). Resolving this question is both important for advancing our understanding of the climate system, as well as a critical test of numerical models' ability to reliably simulate different climates. The observational evidence, based on interpreting geochemical tracers archived in sediments, is conflicting, as are simulations carried out with state-of-the-art climate models (e.g., as part of the PMIP3 suite), which, due to the computational cost involved, do not by and large include biogeochemical and isotope tracers that can be directly compared with proxy data. Here, we apply geochemical observations to evaluate the ability of several realisations of an ocean model driven by atmospheric forcing from the PMIP3 suite of climate models to simulate global ocean circulation during the LGM. This results in a wide range of circulation states that are then used to simulate biogeochemical tracer and isotope (13C, 14C and Pa/Th) distributions using an efficient, "offline" computational scheme known as the transport matrix method (TMM). One of the key advantages of this approach is the use of a uniform set of biogeochemical and isotope parameterizations across all the different circulations based on the PMIP3 models. We compare these simulated distributions to both modern observations and data from LGM ocean sediments to identify similarities and discrepancies between model and data. We find, for example, that when the ocean model is forced with wind stress from the PMIP3 models the radiocarbon age of the deep ocean is systematically younger compared with reconstructions. Changes in

Effects of ozone-vegetation coupling on surface ozone air quality via biogeochemical and meteorological feedbacks

Science.gov (United States)

Sadiq, Mehliyar; Tai, Amos P. K.; Lombardozzi, Danica; Martin, Maria Val

2017-02-01

Tropospheric ozone is one of the most hazardous air pollutants as it harms both human health and plant productivity. Foliage uptake of ozone via dry deposition damages photosynthesis and causes stomatal closure. These foliage changes could lead to a cascade of biogeochemical and biogeophysical effects that not only modulate the carbon cycle, regional hydrometeorology and climate, but also cause feedbacks onto surface ozone concentration itself. In this study, we implement a semi-empirical parameterization of ozone damage on vegetation in the Community Earth System Model to enable online ozone-vegetation coupling, so that for the first time ecosystem structure and ozone concentration can coevolve in fully coupled land-atmosphere simulations. With ozone-vegetation coupling, present-day surface ozone is simulated to be higher by up to 4-6 ppbv over Europe, North America and China. Reduced dry deposition velocity following ozone damage contributes to ˜ 40-100 % of those increases, constituting a significant positive biogeochemical feedback on ozone air quality. Enhanced biogenic isoprene emission is found to contribute to most of the remaining increases, and is driven mainly by higher vegetation temperature that results from lower transpiration rate. This isoprene-driven pathway represents an indirect, positive meteorological feedback. The reduction in both dry deposition and transpiration is mostly associated with reduced stomatal conductance following ozone damage, whereas the modification of photosynthesis and further changes in ecosystem productivity are found to play a smaller role in contributing to the ozone-vegetation feedbacks. Our results highlight the need to consider two-way ozone-vegetation coupling in Earth system models to derive a more complete understanding and yield more reliable future predictions of ozone air quality.

Exploring the Influence of Topography on Belowground C Processes Using a Coupled Hydrologic-Biogeochemical Model

Science.gov (United States)

Shi, Y.; Davis, K. J.; Eissenstat, D. M.; Kaye, J. P.; Duffy, C.; Yu, X.; He, Y.

2014-12-01

Belowground carbon processes are affected by soil moisture and soil temperature, but current biogeochemical models are 1-D and cannot resolve topographically driven hill-slope soil moisture patterns, and cannot simulate the nonlinear effects of soil moisture on carbon processes. Coupling spatially-distributed physically-based hydrologic models with biogeochemical models may yield significant improvements in the representation of topographic influence on belowground C processes. We will couple the Flux-PIHM model to the Biome-BGC (BBGC) model. Flux-PIHM is a coupled physically-based land surface hydrologic model, which incorporates a land-surface scheme into the Penn State Integrated Hydrologic Model (PIHM). The land surface scheme is adapted from the Noah land surface model. Because PIHM is capable of simulating lateral water flow and deep groundwater, Flux-PIHM is able to represent the link between groundwater and the surface energy balance, as well as the land surface heterogeneities caused by topography. The coupled Flux-PIHM-BBGC model will be tested at the Susquehanna/Shale Hills critical zone observatory (SSHCZO). The abundant observations, including eddy covariance fluxes, soil moisture, groundwater level, sap flux, stream discharge, litterfall, leaf area index, above ground carbon stock, and soil carbon efflux, make SSHCZO an ideal test bed for the coupled model. In the coupled model, each Flux-PIHM model grid will couple a BBGC cell. Flux-PIHM will provide BBGC with soil moisture and soil temperature information, while BBGC provides Flux-PIHM with leaf area index. Preliminary results show that when Biome- BGC is driven by PIHM simulated soil moisture pattern, the simulated soil carbon is clearly impacted by topography.

Integrated synoptic surveys using an autonomous underwater vehicle and manned boats

Science.gov (United States)

Jackson, P. Ryan

2013-01-01

Traditional surface-water surveys are being combined with autonomous technology to produce integrated surveys of bathymetry, water quality, and velocity in inland lakes and reservoirs. This new technology provides valuable, high-resolution, integrated data that allow a systems-based approach to understanding common environmental problems. This fact sheet presents several example applications of integrated surveys within inland lakes and coastal Lake Michigan and Lake Erie.

Dust in the Earth system: the biogeochemical linking of land, air and sea.

Science.gov (United States)

Ridgwell, Andy J

2002-12-15

Understanding the response of the Earth's climate system to anthropogenic perturbation has been a pressing priority for society since the late 1980s. However, recent years have seen a major paradigm shift in how such an understanding can be reached. Climate change demands analysis within an integrated 'Earth-system' framework, taken to encompass the suite of interacting physical, chemical, biological and human processes that, in transporting and transforming materials and energy, jointly determine the conditions for life on the whole planet. This is a highly complex system, characterized by multiple nonlinear responses and thresholds, with linkages often between apparently disparate components. The interconnected nature of the Earth system is wonderfully illustrated by the diverse roles played by atmospheric transport of mineral 'dust', particularly in its capacity as a key pathway for the delivery of nutrients essential to plant growth, not only on land, but perhaps more importantly, in the ocean. Dust therefore biogeochemically links land, air and sea. This paper reviews the biogeochemical role of mineral dust in the Earth system and its interaction with climate, and, in particular, the potential importance of both past and possible future changes in aeolian delivery of the micro-nutrient iron to the ocean. For instance, if, in the future, there was to be a widespread stabilization of soils for the purpose of carbon sequestration on land, a reduction in aeolian iron supply to the open ocean would occur. The resultant weakening of the oceanic carbon sink could potentially offset much of the carbon sequestered on land. In contrast, during glacial times, enhanced dust supply to the ocean could have 'fertilized' the biota and driven atmospheric CO(2) lower. Dust might even play an active role in driving climatic change; since changes in dust supply may affect climate, and changes in climate, in turn, influence dust, a 'feedback loop' is formed. Possible feedback

Delineating the relationship between chromophoric dissolved organic matter (CDOM) variability and biogeochemical parameters in a shallow continental shelf

OpenAIRE

Sourav Das; Sugata Hazra; Aneesh A. Lotlikar; Isha Das; Sandip Giri; Abhra Chanda; Anirban Akhand; Sourav Maity; T. Srinivasa Kumar

2016-01-01

Absorption coefficient of chromophoric dissolved organic matter (CDOM) at 440 nm [aCDOM (440)], sea surface salinity (SSS), total suspended matter (TSM) and chlorophyll-a (chl-a) were measured during October, 2014 to March, 2015 in the shallow continental shelf waters of the Hugli Estuary, adjacent to West Bengal coast, India. The primary objective of the study was to characterize the relationship between aCDOM (440) and the above mentioned biogeochemical parameters. Upon analyzing the result...

Biogeochemical Impact of Long-Range Transported Dust over Northern South China Sea

Science.gov (United States)

Tsay, Si-Chee; Wang, S. H.; Hsu, N. C.

2011-01-01

Transpacific transport and impact of Asian dust aerosols have been well documented (e.g., results from ACE-Asia and regional follow-on campaigns), but little is known about dust invasion to the South China Sea (SCS). On 19-21 March 2010, a fierce Asian dust storm affected large areas from the Gobi deserts to the West Pacific, including Taiwan and Hong Kong. As a pilot study of the 7-SEAS (Seven South East Asian Studies) in the northern SCS, detailed characteristics of long-range transported dust aerosols were first observed by a comprehensive set of ground-based instruments deployed at the Dongsha islands (20deg42'52" N, 116deg43'51" E). Aerosol measurements such as particle mass concentrations, size distribution, optical properties, hygroscopicity, and vertical profiles help illustrate the evolution of this dust outbreak. Our results indicate that these dust particles were mixed with anthropogenic and marine aerosols, and transported near the surface. Satellite assessment of biogeochemical impact of dust deposition into open oceans is hindered by our current inability in retrieving areal dust properties and ocean colors over an extensive period of time, particularly under the influence of cloudy conditions. In this paper, we analyze the changes of retrieved Chlorophyll-a (Chl-a) concentration over the northern SCS, considered as oligotophic waters in the spring, from long-term SeaWiFS measurements since 1997. Over the past decade, six long-range transported dust events are identified based on spatiotemporal evolutions of PM10 measurements from regional monitoring stations, with the aid of trajectory analysis. Multi-year composites of Chl-a imagery for dust event and non-dust background during March-April are applied to overcome insufficient retrievals of Chl-a due to cloudy environment. Due to anthropogenic modification within a shallow boundary layer off the densely populated and industrial southeast coast of China, the iron ion activation of deliquescent dust

Supercontinent tectonics and biogeochemical cycle: A matter of ‘life and death’

Directory of Open Access Journals (Sweden)

M. Santosh

2010-10-01

Full Text Available The formation and disruption of supercontinents have significantly impacted mantle dynamics, solid earth processes, surface environments and the biogeochemical cycle. In the early history of the Earth, the collision of parallel intra-oceanic arcs was an important process in building embryonic continents. Superdownwelling along Y-shaped triple junctions might have been one of the important processes that aided in the rapid assembly of continental fragments into closely packed supercontinents. Various models have been proposed for the fragmentation of supercontinents including thermal blanket and superplume hypotheses. The reassembly of supercontinents after breakup and the ocean closure occurs through “introversion”, “extroversion” or a combination of both, and is characterized by either Pacific-type or Atlantic-type ocean closure. The breakup of supercontinents and development of hydrothermal system in rifts with granitic basement create anomalous chemical environments enriched in nutrients, which serve as the primary building blocks of the skeleton and bone of early modern life forms. A typical example is the rifting of the Rodinia supercontinent, which opened up an N–S oriented sea way along which nutrient enriched upwelling brought about a habitable geochemical environment. The assembly of supercontinents also had significant impact on life evolution. The role played by the Cambrian Gondwana assembly has been emphasized in many models, including the formation of ‘Transgondwana Mountains’ that might have provided an effective source of rich nutrients to the equatorial waters, thus aiding the rapid increase in biodiversity. The planet has witnessed several mass extinction events during its history, mostly connected with major climatic fluctuations including global cooling and warming events, major glaciations, fluctuations in sea level, global anoxia, volcanic eruptions, asteroid impacts and gamma radiation. Some recent models

Biogeochemical study of termite mounds: a case study from Tummalapalle area of Andhra Pradesh, India.

Science.gov (United States)

Arveti, Nagaraju; Reginald, S; Kumar, K Sunil; Harinath, V; Sreedhar, Y

2012-04-01

Termite mounds are abundant components of Tummalapalle area of uranium mineralization of Cuddapah District of Andhra Pradesh, India. The systematic research has been carried out on the application of termite mound sampling to mineral exploration in this region. The distribution of chemical elements Cu, Pb, Zn, Ni, Co, Cr, Li, Rb, Sr, Ba, and U were studied both in termite soils and adjacent surface soils. Uranium accumulations were noticed in seven termite mounds ranging from 10 to 36 ppm. A biogeochemical parameter called "Biological Absorption Coefficient" of the termite mounds indicated the termite affected soils contained huge amounts of chemical elements than the adjacent soils.

Tracing global biogeochemical cycles and meridional overturning circulation using chromophoric dissolved organic matter

Science.gov (United States)

Nelson, Norman B.; Siegel, David A.; Carlson, Craig A.; Swan, Chantal M.

2010-02-01

Basin-scale distributions of light absorption by chromophoric dissolved organic matter (CDOM) are positively correlated (R2 > 0.8) with apparent oxygen utilization (AOU) within the top kilometer of the Pacific and Indian Oceans. However, a much weaker correspondence is found for the Atlantic (R2 organic matter from sinking particles. The observed meridional-depth sections of CDOM result from a balance between biogeochemical processes (autochthonous production and solar bleaching) and the meridional overturning circulation. Rapid mixing in the Atlantic dilutes CDOM in the interior and implies that the time scale for CDOM accumulation is greater than ˜50 years. CDOM emerges as a unique tracer for diagnosing changes in biogeochemistry and the overturning circulation, similar to dissolved oxygen, with the additional feature that it can be quantified from satellite observation.

Sensitivity of global ocean biogeochemical dynamics to ecosystem structure in a future climate

Science.gov (United States)

Manizza, Manfredi; Buitenhuis, Erik T.; Le Quéré, Corinne

2010-07-01

Terrestrial and oceanic ecosystem components of the Earth System models (ESMs) are key to predict the future behavior of the global carbon cycle. Ocean ecosystem models represent low complexity compared to terrestrial ecosystem models. In this study we use two ocean biogeochemical models based on the explicit representation of multiple planktonic functional types. We impose to the models the same future physical perturbation and compare the response of ecosystem dynamics, export production (EP) and ocean carbon uptake (OCU) to the same physical changes. Models comparison shows that: (1) EP changes directly translate into changes of OCU on decadal time scale, (2) the representation of ecosystem structure plays a pivotal role at linking OCU and EP, (3) OCU is highly sensitive to representation of ecosystem in the Equatorial Pacific and Southern Oceans.

MBARI Mapping AUV: A High-Resolution Deep Ocean Seafloor Mapping Capability

Science.gov (United States)

Caress, D. W.; Kirkwood, W. J.; Thomas, H.; McEwen, R.; Henthorn, R.; McGill, P.; Thompson, D.; Sibenac, M.; Jensen, S.; Shane, F.; Hamilton, A.

2005-05-01

The Monterey Bay Aquarium Research Institute (MBARI) is developing an autonomous seafloor mapping capability for deep ocean science applications. The MBARI Mapping AUV is a 0.53 m (21 in) diameter, 5.1 m (16.7 ft) long, Dorado-class vehicle designed to carry four mapping sonars. The primary sensor is a 200 kHz multibeam sonar producing swath bathymetry and sidescan. In addition, the vehicle carries 100 kHz and 410 kHz chirp sidescan sonars, and a 2-16 kHz sweep chirp subbottom profiler. Navigation and attitude data are obtained from an inertial navigation system (INS) incorporating a ring laser gyro and a 300 kHz Doppler velocity log (DVL). The vehicle also includes acoustic modem, ultra-short baseline navigation, and long-baseline navigation systems. The Mapping AUV is powered by 6 kWhr of Li-polymer batteries, providing expected mission duration of 12 hours at a typical speed of 1.5 m/s. All components of the vehicle are rated to 6000 m depth, allowing MBARI to conduct high-resolution mapping of the deep-ocean seafloor. The sonar package is also be mountable on ROV Ventana, allowing surveys at altitudes less than 20 m at topographically challenging sites. The vehicle was assembled and extensively tested during 2004; this year we are commencing operations for MBARI science projects while continuing the process of testing and integrating the complete suite of sensors and systems. MBARI is beginning to use this capability to observe the changing morphology of dynamic systems such as submarine canyons and active slumps, to map deep-water benthic habitats at resolutions comparable to ROV and submersible observations, to provide basemaps for ROV dives, and to provide high resolution bathymetry and subbottom profiles as part of a variety of projects requiring knowledge of the seafloor. We will present initial results from surveys in and around Monterey Canyon, including high resolution repeat surveys of four sites along the canyon axis.

High Resolution Marine Magnetic Survey of Shallow Water Littoral Area

OpenAIRE

Jacob Sharvit; Nizan Salomonski; Roger Alimi; Hovav Zafrir; Tsuriel Ram Cohen; Boris Ginzburg; Eyal Weiss

2007-01-01

The purpose of this paper is to present a system developed for detection andaccurate mapping of ferro-metallic objects buried below the seabed in shallow waters. Thesystem comprises a precise magnetic gradiometer and navigation subsystem, both installedon a non-magnetic catamaran towed by a low-magnetic interfering boat. In addition wepresent the results of a marine survey of a near-shore area in the vicinity of Atlit, a townsituated on the Mediterranean coast of Israel, about 15 km south of ...

National Hydrography Dataset Plus High Resolution (NHDPlus HR) - USGS National Map Downloadable Data Collection

Data.gov (United States)

U.S. Geological Survey, Department of the Interior — The High Resolution National Hydrography Dataset Plus (NHDPlus HR) is an integrated set of geospatial data layers, including the best available National Hydrography...

Aquifer/aquitard interfaces: mixing zones that enhance biogeochemical reactions

Science.gov (United States)

McMahon, P. B.

2001-01-01

Several important biogeochemical reactions are known to occur near the interface between aquifer and aquitard sediments. These reactions include O2 reduction; denitrification; and Fe3+, SO42-, and CO2 (methanogenesis) reduction. In some settings, these reactions occur on the aquitard side of the interface as electron acceptors move from the aquifer into the electron-donor-enriched aquitard. In other settings, these reactions occur on the aquifer side of the interface as electron donors move from the aquitard into the electron-acceptor-enriched, or microorganism-enriched, aquifer. Thus, the aquifer/aquitard interface represents a mixing zone capable of supporting greater microbial activity than either hydrogeologic unit alone. The extent to which biogeochemical reactions proceed in the mixing zone and the width of the mixing zone depend on several factors, including the abundance and solubility of electron acceptors and donors on either side of the interface and the rate at which electron acceptors and donors react and move across the interface. Biogeochemical reactions near the aquifer/aquitard interface can have a substantial influence on the chemistry of water in aquifers and on the chemistry of sediments near the interface. Résumé. Il se produit au voisinage de l'interface entre les aquifères et les imperméables plusieurs réactions biogéochimiques importantes. Il s'agit des réactions de réduction de l'oxygène, de la dénitrification et de la réduction de Fe3+, SO42- et CO2 (méthanogenèse). Dans certaines situations, ces réactions se produisent du côté imperméable de l'interface, avec des accepteurs d'électrons qui vont de l'aquifère vers l'imperméable riche en donneurs d'électrons. Dans d'autres situations, ces réactions se produisent du côté aquifère de l'interface, avec des donneurs d'électrons qui se déplacent de l'imperméable vers l'aquifère riche en accepteurs d'électrons ou en microorganismes. Ainsi, l'interface aquif

Biogeochemical tracers of the marine cyanobacterium Trichodesmium

Science.gov (United States)

Carpenter, Edward J.; Harvey, H. Rodger; Fry, Brian; Capone, Douglas G.

1997-01-01

We examined the utility of several biogeochemical tracers for following the fate of the planktonic diazotrophic cyanobacterium Trichodesmium in the sea. The presence of a (CIO) fatty acid previously reported was observed in a culture of Trichodesmium but was not found in natural samples. This cyanobacterium had high concentrations of C 14 and C 16 acids, with lesser amounts of several saturated and unsaturated C 18 fatty acids. This composition was similar to that of other marine cyanobacteria. The major hydrocarbon identified was the C 17n-alkane, which was present in all samples from the five stations examined. Sterols common to algae and copepods were observed in many samples along with hopanoids representative of bacteria, suggesting a varied community structure in colonies collected from different stations. We found no unique taxonomic marker of Trichodesmium among the sterols. Measurements of the σ 15N and σ 13C in Trichodesmium samples from the SW Sargasso and NW Caribbean Seas averaged -0.4960 (range from -0.7 to -0.25960) and -12.9%0 (range from -15.2 to -11.9960), respectively, thus confirming previous observations that this cyanobacterial diazotroph has both the lowest σ 15N and highest σ 13C of any marine phytoplankter observed to date. A culture of Trichodesmium grown under diazotrophic conditions had a σ 15N between -1.3 and -3.6960. Our results support the supposition that the relatively low σ 15N and high σ 13C values observed in suspended and sediment-trapped material from some tropical and subtropical seas result from substantial input of C and N by Trichodesmium.

Novel imaging techniques, integrated with mineralogical, geochemical and microbiological characterizations to determine the biogeochemical controls on technetium mobility in FRC sediments. Final report

International Nuclear Information System (INIS)

Lloyd, Jonathan R.

2009-01-01

The objective of this research program was to take a highly multidisciplinary approach to define the biogeochemical factors that control technetium (Tc) mobility in FRC sediments. The aim was to use batch and column studies to probe the biogeochemical conditions that control the mobility of Tc at the FRC. Background sediment samples from Area 2 (pH 6.5, low nitrate, low 99 Tc) and Area 3 (pH 3.5, high nitrate, relatively high 99 Tc) of the FRC were selected (http://www.esd.ornl.gov/nabirfrc). For the batch experiments, sediments were mixed with simulated groundwater, modeled on chemical constituents of FRC waters and supplemented with 99 Tc(VII), both with and without added electron donor (acetate). The solubility of the Tc was monitored, alongside other biogeochemical markers (nitrate, nitrite, Fe(II), sulfate, acetate, pH, Eh) as the 'microcosms' aged. At key points, the microbial communities were also profiled using both cultivation-dependent and molecular techniques, and results correlated with the geochemical conditions in the sediments. The mineral phases present in the sediments were also characterized, and the solid phase associations of the Tc determined using sequential extraction and synchrotron techniques. In addition to the batch sediment experiments, where discrete microbial communities with the potential to reduce and precipitate 99 Tc will be separated in time, we also developed column experiments where biogeochemical processes were spatially separated. Experiments were conducted both with and without amendments proposed to stimulate radionuclide immobilization (e.g. the addition of acetate as an electron donor for metal reduction), and were also planned with and without competing anions at high concentration (e.g. nitrate, with columns containing Area 3 sediments). When the columns had stabilized, as determined by chemical analysis of the effluents, we used a spike of the short-lived gamma emitter 99m Tc (50-200 MBq; half life 6 hours) and its

Soil biogeochemical and fungal patterns across a precipitation gradient in the lowland tropical rainforests of French Guiana

Science.gov (United States)

Soong, J.; Verbruggen, E.; Janssens, I.

2016-12-01

The Guyafor network contains over 12 pristine tropical rainforest long-term research sites throughout French Guiana, with a focus on vegetation and environmental monitoring at regular intervals. However, biogeochemical and belowground insights are needed to complete the picture of ecosystem functioning in these lowland tropical rainforests, which are critical to Earth's water and energy balance. Improving our biogeochemical understanding of these ecosystems is needed to improve Earth System Models, which poorly represent tropical systems. In July 2015 we sampled soils and litter from 12 of the Guyafor permanent plots in French Guiana spanning a mean annual precipitation gradient of over 2000 mm per year. We measured soil texture, pH, C, N and available P stocks in the top 30 cm, and fungal biodiversity using ITS DNA sequencing and characterized soil organic matter (SOM) C, N and P distribution among physically defined SOM fractions. We also measured litter layer standing stocks and CNP stoichiometry. We found significant stocks of SOM in the top 30 cm of the soil varying by a factor of 4 in the top 30 cm of soil with a negative correlation of arbuscular mycorrhizal fungi and soil C and N with available P. Available P was also a strong predictor of fungal community composition. Furthermore there is evidence for precipitation and mineralogical influences on leaf litter and SOM dynamics highlighting the importance of heterogeneity in tropical soil substrates and sub-climates in better understanding the biogeochemistry of tropical ecosystems.

Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs.

Science.gov (United States)

Hu, Ping; Tom, Lauren; Singh, Andrea; Thomas, Brian C; Baker, Brett J; Piceno, Yvette M; Andersen, Gary L; Banfield, Jillian F

2016-01-19

Oil reservoirs are major sites of methane production and carbon turnover, processes with significant impacts on energy resources and global biogeochemical cycles. We applied a cultivation-independent genomic approach to define microbial community membership and predict roles for specific organisms in biogeochemical transformations in Alaska North Slope oil fields. Produced water samples were collected from six locations between 1,128 m (24 to 27°C) and 2,743 m (80 to 83°C) below the surface. Microbial community complexity decreased with increasing temperature, and the potential to degrade hydrocarbon compounds was most prevalent in the lower-temperature reservoirs. Sulfate availability, rather than sulfate reduction potential, seems to be the limiting factor for sulfide production in some of the reservoirs under investigation. Most microorganisms in the intermediate- and higher-temperature samples were related to previously studied methanogenic and nonmethanogenic archaea and thermophilic bacteria, but one candidate phylum bacterium, a member of the Acetothermia (OP1), was present in Kuparuk sample K3. The greatest numbers of candidate phyla were recovered from the mesothermic reservoir samples SB1 and SB2. We reconstructed a nearly complete genome for an organism from the candidate phylum Parcubacteria (OD1) that was abundant in sample SB1. Consistent with prior findings for members of this lineage, the OD1 genome is small, and metabolic predictions support an obligately anaerobic, fermentation-based lifestyle. At moderate abundance in samples SB1 and SB2 were members of bacteria from other candidate phyla, including Microgenomates (OP11), Atribacteria (OP9), candidate phyla TA06 and WS6, and Marinimicrobia (SAR406). The results presented here elucidate potential roles of organisms in oil reservoir biological processes. The activities of microorganisms in oil reservoirs impact petroleum resource quality and the global carbon cycle. We show that bacteria

The implementation of crisis resolution home treatment teams in wales: results of the national survey 2007-2008.

Science.gov (United States)

Jones, Richard; Jordan, Sue

2010-02-18

In mental health nursing, Crisis Resolution and Home Treatment (CRHT) services are key components of the shift from in-patient to community care. CRHT has been developed mainly in urban settings, and deployment in more rural areas has not been examined. We aimed to evaluate CRHT services' progress towards policy targets. All 18 CRHT teams in Wales were surveyed. A service profile questionnaire was distributed to team leaders. Fourteen of 18 teams responded in full. All but one were led by nurses, who formed the main professional group. All teams reported providing an alternative to hospital admission and assisting early discharge. With one exception, teams were 'gatekeeping' hospital beds. There was some divergence in clients seen, perceived impact of the service, operational hours, distances travelled, team structure, input of consultant psychiatrists and caseloads. We found some differences between the 8 urban teams and the 6 teams serving rural or mixed areas: rural teams travelled more, had fewer inpatient beds, and less medical input (0.067 compared to 0.688 whole time equivalents).. Most respondents felt that resource constraints were limiting further developments. Teams met standards for CHRT services in Wales; however, these are less onerous than those in England, particularly in relation to operational hours and staffing complement. As services develop, it will be important to ensure that rural and mixed areas receive the same level of input as urban areas.

High Resolution Marine Magnetic Survey of Shallow Water Littoral Area

OpenAIRE

Weiss, Eyal; Ginzburg, Boris; Cohen, Tsuriel Ram; Zafrir, Hovav; Alimi, Roger; Salomonski, Nizan; Sharvit, Jacob

2007-01-01

The purpose of this paper is to present a system developed for detection and accurate mapping of ferro-metallic objects buried below the seabed in shallow waters. The system comprises a precise magnetic gradiometer and navigation subsystem, both installed on a non-magnetic catamaran towed by a low-magnetic interfering boat. In addition we present the results of a marine survey of a near-shore area in the vicinity of Atlit, a town situated on the Mediterranean coast of Israel, about 15 km sout...

3D seismic surveys for shallow targets

Energy Technology Data Exchange (ETDEWEB)

Lawton, D.C.; Stewart, R.R.; Bertram, M.B. [Calgary Univ., AB (Canada). Dept. of Geoscience, Consortium for Research in Elastic Wave Exploration Seismology

2008-07-01

Although 3D seismic surveys are generally used to map deep hydrocarbon plays, this study demonstrated that they can be useful for characterizing shallow targets, such as oilsands deposits. A high-resolution 3D seismic survey was undertaken to map shallow stratigraphy near Calgary, Alberta. The project demonstrated the efficacy of reflection seismic surveys for shallow targets ranging from 100 to 500 metres. The purpose of the program was to map shallow stratigraphy and structure to depths of up to 500m, and to investigate shallow aquifers in the study area. The results of the survey illustrated the opportunity that 3D seismic surveys provide for mapping shallow reflectors and the acquisition geometry needed to image them. Applications include mapping the distribution of shallow aquifers, delineating shallow coals and investigating oilsands deposits. 2 refs., 5 figs.

Nutrient removal using biosorption activated media: Preliminary biogeochemical assessment of an innovative stormwater infiltration basin

International Nuclear Information System (INIS)

O'Reilly, Andrew M.; Wanielista, Martin P.; Chang, Ni-Bin; Xuan, Zhemin; Harris, Willie G.

2012-01-01

Soil beneath a stormwater infiltration basin receiving runoff from a 23 ha predominantly residential watershed in north-central Florida, USA, was amended using biosorption activated media (BAM) to study the effectiveness of this technology in reducing inputs of nitrogen and phosphorus to groundwater. The functionalized soil amendment BAM consists of a 1.0:1.9:4.1 mixture (by volume) of tire crumb (to increase sorption capacity), silt and clay (to increase soil moisture retention), and sand (to promote sufficient infiltration), which was applied to develop an innovative stormwater infiltration basin utilizing nutrient reduction and flood control sub-basins. Comparison of nitrate/chloride (NO 3 − /Cl − ) ratios for the shallow groundwater indicates that prior to using BAM, NO 3 − concentrations were substantially influenced by nitrification or variations in NO 3 − input. In contrast, for the new basin utilizing BAM, NO 3 − /Cl − ratios indicate minor nitrification and NO 3 − losses with the exception of one summer sample that indicated a 45% loss. Biogeochemical indicators (denitrifier activity derived from real-time polymerase chain reaction and variations in major ions, nutrients, dissolved and soil gases, and stable isotopes) suggest that NO 3 − losses are primarily attributable to denitrification, whereas dissimilatory nitrate reduction to ammonium is a minor process. Denitrification was likely occurring intermittently in anoxic microsites in the unsaturated zone, which was enhanced by the increased soil moisture within the BAM layer and resultant reductions in surface/subsurface oxygen exchange that produced conditions conducive to increased denitrifier activity. Concentrations of total dissolved phosphorus and orthophosphate (PO 4 3− ) were reduced by more than 70% in unsaturated zone soil water, with the largest decreases in the BAM layer where sorption was the most likely mechanism for removal. Post-BAM PO 4 3− /Cl − ratios for shallow

VizieR Online Data Catalog: KOIs companions from high-resolution imaging (Hirsch+, 2017)

Science.gov (United States)

Hirsch, L. A.; Ciardi, D. R.; Howard, A. W.; Everett, M. E.; Furlan, E.; Saylors, M.; Horch, E. P.; Howell, S. B.; Teske, J.; Marcy, G. W.

2017-07-01

We report on 176 close (<2'') stellar companions detected with high-resolution imaging near 170 hosts of Kepler Objects of Interest (KOIs). Our sample consists of 170 stellar hosts of Kepler Objects of Interest (KOIs) observed with various high-resolution imaging campaigns. This sample was drawn from the overall sample of KOI stars observed with high-resolution imaging, described in the imaging compilation paper by Furlan et al. 2017 (Cat. J/AJ/153/71). We choose targets for this study by requiring that at least one companion was detected within 2'', and that the companion was detected in two or more filters, providing color information. We choose the 2'' separation limit to include all companions falling on the same Kepler pixel as the primary KOI host star. Furlan et al. 2017 (Cat. J/AJ/153/71) details the observations and measured differential magnitudes (Δm=m2-m1) for stars with high-resolution imaging, including our target systems. Each companion within 2'' must have at least two measured Δm values from the full set of filters used for follow-up observations, in order to be included in our sample. These filters include J-band, H-band, and K-band from adaptive optics imaging from the Keck/NIRC2, Palomar/PHARO, Lick/IRCAL, and MMT/Aries instruments; 562, 692 and 880nm filters from the Differential Speckle Survey Instrument (DSSI) at the Gemini North and WIYN telescopes; i and z bands from the AstraLux lucky imaging campaign at the Calar Alto 2.2m telescope; and LP600 and i bands from Palomar/RoboAO. We also include seeing-limited observations in the U-, B-, and V-bands from the UBV survey (Everett et al.) and "secure" detections (noise probability <10%) in the J-band from the UKIRT Kepler field survey. (3 data files).

Single base-resolution methylome of the silkworm reveals a sparse epigenomic map

DEFF Research Database (Denmark)

Xiang, Hui; Zhu, Jingde; Chen, Quan

2010-01-01

Epigenetic regulation in insects may have effects on diverse biological processes. Here we survey the methylome of a model insect, the silkworm Bombyx mori, at single-base resolution using Illumina high-throughput bisulfite sequencing (MethylC-Seq). We conservatively estimate that 0.11% of genomi...

Coastal and tidal landform detection from high resolution topobathymetric LiDAR data

DEFF Research Database (Denmark)

Andersen, Mikkel S.; Al-Hamdani, Zyad K.; Steinbacher, Frank

-resolution mapping of these land-water transition zones. We have carried out topobathymetric LiDAR surveys in the Knudedyb tidal inlet system, a coastal environment in the Danish Wadden Sea which is part of the Wadden Sea National Park and UNESCO World Heritage. Detailed digital elevation models (DEMs) with a grid...... to tides. Furthermore, we demonstrate the potential of morphometric analysis on high-resolution topobathymetric LiDAR data for automatic identification, characterisation and classification of different landforms present in coastal land-water transition zones. Acknowledgements This work was funded...

A dynamic organic soil biogeochemical model for simulating the effects of wildfire on soil environmental conditions and carbon dynamics of black spruce forests

Science.gov (United States)

Shuhua Yi; A. David McGuire; Eric Kasischke; Jennifer Harden; Kristen Manies; Michelle Mack; Merritt. Turetsky

2010-01-01

Ecosystem models have not comprehensively considered how interactions among fire disturbance, soil environmental conditions, and biogeochemical processes affect ecosystem dynamics in boreal forest ecosystems. In this study, we implemented a dynamic organic soil structure in the Terrestrial Ecosystem Model (DOS-TEM) to investigate the effects of fire on soil temperature...

Response of O2 and pH to ENSO in the California Current System in a high-resolution global climate model

Science.gov (United States)

Turi, Giuliana; Alexander, Michael; Lovenduski, Nicole S.; Capotondi, Antonietta; Scott, James; Stock, Charles; Dunne, John; John, Jasmin; Jacox, Michael

2018-02-01

Coastal upwelling systems, such as the California Current System (CalCS), naturally experience a wide range of O2 concentrations and pH values due to the seasonality of upwelling. Nonetheless, changes in the El Niño-Southern Oscillation (ENSO) have been shown to measurably affect the biogeochemical and physical properties of coastal upwelling regions. In this study, we use a novel, high-resolution global climate model (GFDL-ESM2.6) to investigate the influence of warm and cold ENSO events on variations in the O2 concentration and the pH of the CalCS coastal waters. An assessment of the CalCS response to six El Niño and seven La Niña events in ESM2.6 reveals significant variations in the response between events. However, these variations overlay a consistent physical and biogeochemical (O2 and pH) response in the composite mean. Focusing on the mean response, our results demonstrate that O2 and pH are affected rather differently in the euphotic zone above ˜ 100 m. The strongest O2 response reaches up to several hundreds of kilometers offshore, whereas the pH signal occurs only within a ˜ 100 km wide band along the coast. By splitting the changes in O2 and pH into individual physical and biogeochemical components that are affected by ENSO variability, we found that O2 variability in the surface ocean is primarily driven by changes in surface temperature that affect the O2 solubility. In contrast, surface pH changes are predominantly driven by changes in dissolved inorganic carbon (DIC), which in turn is affected by upwelling, explaining the confined nature of the pH signal close to the coast. Below ˜ 100 m, we find conditions with anomalously low O2 and pH, and by extension also anomalously low aragonite saturation, during La Niña. This result is consistent with findings from previous studies and highlights the stress that the CalCS ecosystem could periodically undergo in addition to impacts due to climate change.

Effect of External Disturbing Gravity Field on Spacecraft Guidance and Surveying Line Layout for Marine Gravity Survey

Directory of Open Access Journals (Sweden)

HUANG Motao

2016-11-01

Full Text Available Centred on the support requirement of flying track control for a long range spacecraft, a detail research is made on the computation of external disturbing gravity field, the survey accuracy of gravity anomaly on the earth' surface and the program of surveying line layout for marine gravity survey. Firstly, the solution expression of navigation error for a long range spacecraft is analyzed and modified, and the influence of the earth's gravity field on flying track of spacecraft is evaluated. Then with a given limited quota of biased error of spacecraft drop point, the accuracy requirement for calculating the external disturbing gravity field is discussed and researched. Secondly, the data truncation error and the propagated data error are studied and estimated, and the quotas of survey resolution and computation accuracy for gravity anomaly on the earth' surface are determined. Finally, based on the above quotas, a corresponding program of surveying line layout for marine gravity survey is proposed. A numerical test has been made to prove the reasonableness and validity of the suggested program.

Permafrost degradation and methane: low risk of biogeochemical climate-warming feedback

International Nuclear Information System (INIS)

Gao Xiang; Adam Schlosser, C; Sokolov, Andrei; Anthony, Katey Walter; Zhuang Qianlai; Kicklighter, David

2013-01-01

Climate change and permafrost thaw have been suggested to increase high latitude methane emissions that could potentially represent a strong feedback to the climate system. Using an integrated earth-system model framework, we examine the degradation of near-surface permafrost, temporal dynamics of inundation (lakes and wetlands) induced by hydro-climatic change, subsequent methane emission, and potential climate feedback. We find that increases in atmospheric CH 4 and its radiative forcing, which result from the thawed, inundated emission sources, are small, particularly when weighed against human emissions. The additional warming, across the range of climate policy and uncertainties in the climate-system response, would be no greater than 0.1 ° C by 2100. Further, for this temperature feedback to be doubled (to approximately 0.2 ° C) by 2100, at least a 25-fold increase in the methane emission that results from the estimated permafrost degradation would be required. Overall, this biogeochemical global climate-warming feedback is relatively small whether or not humans choose to constrain global emissions. (letter)

High-resolution subsurface imaging and neural network recognition: Non-intrusive buried substance location. Final report, January 26, 1997

International Nuclear Information System (INIS)

Sternberg, B.K.; Poulton, M.M.

1998-01-01

A high-frequency, high-resolution electromagnetic (EIVI) imaging system has been developed for environmental geophysics surveys. Some key features of this system include: (1) rapid surveying to allow dense spatial sampling over a large area, (2) high-accuracy measurements which are used to produce a high-resolution image of the subsurface, (3) measurements which have excellent signal-to-noise ratio over a wide bandwidth (31 kHz to 32 MHZ), (4) elimination of electric-field interference at high frequencies, (5) large-scale physical modeling to produce accurate theoretical responses over targets of interest in environmental geophysics surveys, (6) rapid neural network interpretation at the field site, and (7) visualization of complex structures during the survey. Four major experiments were conducted with the system: (1) Data were collected for several targets in our physical modeling facility. (2) We tested the system over targets buried in soil. (3) We conducted an extensive survey at the Idaho National Engineering Laboratory (INEL) Cold Test Pit (CTP). The location of the buried waste, category of waste, and thickness of the clay cap were successfully mapped. (4) We ran surveys over the acid pit at INEL. This was an operational survey over a hot site. The interpreted low-resistivity region correlated closely with the known extent of the acid pit

Assessing the impact of Narasin on biogeochemical N-cycling in unsaturated soil.

Science.gov (United States)

Devries, S. L.; Loving, M.; Logozzo, L. A.; Zhang, P.

2016-12-01

Agricultural soils are exposed to Narasin, an anti-coccidiodal drug, when poultry litter is applied as a nitrogen fertilizer. Though it has a relatively short half-life in soil, narasin may persist at concentrations ranging from pg·kg-1 to ng·kg-1. A recent study reported that that exposure in this range affect the composition of soil microbial communities, leading to delayed or modified rates of biogeochemical nitrogen redox reactions. The objective of this experiment was to conduct a comprehensive examination into the effects of 1-1000 ng kg-1 Narasin on the rates of nitrogen mineralization, nitrification, and denitrification as well as the associated impacts on soil N availability and N2O losses. Soils tested at 40%, 60%, and 80% WFPS showed that ultralow doses of narasin (1-1000 ng kg-1) can significantly alter one or more steps in the N cycle in ways that may impact N availability to crop plants and increase non-point source N pollution.

Biogeochemical Cycling and Environmental Stability of Pu Relevant to Long-Term Stewardship of DOE Sites

Energy Technology Data Exchange (ETDEWEB)

Francis, Arokiasamy J.; Santschi, Peter H.; Honeyman, Bruce D.

2005-06-01

The overall objective of this proposed research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Central to Pu cycling (transport initiation to immobilization) is the role of microorganisms. The hypothesis underlying this proposal is that microbial activity is the causative agent in initiating the mobilization of Pu in near-surface environments: through the transformation of Pu associated with solid phases, production of extracellular polymeric substances (EPS) carrier phases, and the creation of microenvironments. Also, microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for Pu transport retardation.

Biogeochemical Cycling and Environmental Stability of Pu Relevant to Long-Term Stewardship of DOE Sites

Energy Technology Data Exchange (ETDEWEB)

Honeyman, Bruce D.

2006-06-01

The overall objective of this proposed research is to understand the biogeochemical cycling of Pu in environments of interest to long-term DOE stewardship issues. Central to Pu cycling (transport initiation to immobilization) is the role of microorganisms. The hypothesis underlying this proposal is that microbial activity is the causative agent in initiating the mobilization of Pu in near-surface environments: through the transformation of Pu associated with solid phases, production of extracellular polymeric substances (EPS) carrier phases, and the creation of microenvironments. Also, microbial processes are central to the immobilization of Pu species, through the metabolism of organically complexed Pu species and Pu associated with extracellular carrier phases and the creation of environments favorable for Pu transport retardation.

The structure of the ISM in the Zone of Avoidance by high-resolution multi-wavelength observations

Science.gov (United States)

Tóth, L. V.; Doi, Y.; Pinter, S.; Kovács, T.; Zahorecz, S.; Bagoly, Z.; Balázs, L. G.; Horvath, I.; Racz, I. I.; Onishi, T.

2018-05-01

We estimate the column density of the Galactic foreground interstellar medium (GFISM) in the direction of extragalactic sources. All-sky AKARI FIS infrared sky survey data might be used to trace the GFISM with a resolution of 2 arcminutes. The AKARI based GFISM hydrogen column density estimates are compared with similar quantities based on HI 21cm measurements of various resolution and of Planck results. High spatial resolution observations of the GFISM may be important recalculating the physical parameters of gamma-ray burst (GRB) host galaxies using the updated foreground parameters.

Seasonal and high-resolution variability in hydrochemistry of the Andes-Amazon

Science.gov (United States)

Burt, E.; West, A. J.

2017-12-01

Stream hydrochemistry acts as a record of integrated catchment processes such as the amount of time it takes precipitation to flow through the subsurface and become streamflow (water transit times), water-rock interaction and biogeochemical cycling. Although it is understood that sampling interval affects observed patterns in hydrochemistry, most studies collect samples on a weekly, bi-weekly or monthly schedule due to lack of resources or the difficulty of maintaining automated sampling devices. Here, we attempt to combine information from two sampling time scales, comparing a year-long hydrochemical time series to data from a recent sub-daily sampling campaign. Starting in April 2016, river, soil and rain waters have been collected every two weeks at five small catchments spanning the tropical Andes and Amazon - a natural laboratory for its gradients in topography, erosion rates, precipitation, temperature and flora. Between January and March, 2017, we conducted high frequency sampling for approximately one week at each catchment, sampling at least every four hours including overnight. We will constrain young water fractions (Kirchner, 2016) and storm water fluxes for the experimental catchments using stable isotopes of water as conservative tracers. Major element data will provide the opportunity to make initial constraints on geochemical and hydrologic coupling. Preliminary results suggest that in the Amazon, hydrochemistry patterns are dependent on sampling frequency: the seasonal cycle in stable isotopes of water is highly damped, while the high resolution sampling displays large variability. This suggests that a two-week sampling interval is not frequent enough to capture rapid transport of water, perhaps through preferential flow networks. In the Andes, stable isotopes of water are highly damped in both the seasonal and high resolution cycle, suggesting that the catchment behaves as a "well-mixed" system.

Final Report DE-SC0006997; PI Sharp; Coupled Biological and Micro-XAS/XRF Analysis of In Situ Uranium Biogeochemical Processes

Energy Technology Data Exchange (ETDEWEB)

Sharp, Jonathan O. [Colorado School of Mines, Golden, CO (United States)

2016-03-30

Project Overview: The impact of the original seed award was substantially increased by leveraging a postdoctoral fellowship (Marie Curie Postdoctoral Fellowship) and parallel funds from (A) synergistic project supported by NSF and (B) with DOE collaborators (PI’s Ranville and Williams) as well as no-cost extension that greatly increased the impact and publications associated with the project. In aligning with SBR priorities, the project’s focus was extended more broadly to explore coupled biogeochemical analysis of metal (im)mobilization processes beyond uranium with a foundation in integrating microbial ecology with geochemical analyses. This included investigations of arsenic and zinc during sulfate reducing conditions in addition to direct microbial reduction of metals. Complimentary work with NSF funding and collaborative DOE interactions further increased the project scope to investigate metal (im)mobilization coupled to biogeochemical perturbations in forest ecosystems with an emphasis on coupled carbon and metal biogeochemistry. In total, the project was highly impactful and resulted in 9 publications and directly supported salary/tuition for 3 graduate students at various stages of their academic careers as well as my promotion to Associate Professor. In going forward, findings provided inspiration for a two subsequent proposals with collaborators at Lawrence Berkeley Laboratory and others that are currently in review (as of March 2016).

Light Field Photography A Survey

Directory of Open Access Journals (Sweden)

M Zulkifl Hasan

2017-01-01

Full Text Available In this survey author will be discussing about light field photography its importance techniques used in it to have an excellent output from the normal cameras. Light field photography has become an emerging area due to its refocusing of digital image and 3D reconstruction. Reconstruction of image tells us about its high resolution and refocusing is used to clear the blur image.1

Psychosocial Maturity and Conflict Resolution Management of Higher Secondary School Students

Science.gov (United States)

Jaseena M.P.M., Fathima; P., Divya

2014-01-01

The aim of the study is to find out the extent and difference in the mean scores of Psychosocial Maturity and Conflict Resolution Management of Higher secondary school students of Kerala. A survey technique was used for the study. Sample consists of 685 higher secondary students by giving due representation other criteria. Findings revealed that…

Triangulation-based 3D surveying borescope

Science.gov (United States)

Pulwer, S.; Steglich, P.; Villringer, C.; Bauer, J.; Burger, M.; Franz, M.; Grieshober, K.; Wirth, F.; Blondeau, J.; Rautenberg, J.; Mouti, S.; Schrader, S.

2016-04-01

In this work, a measurement concept based on triangulation was developed for borescopic 3D-surveying of surface defects. The integration of such measurement system into a borescope environment requires excellent space utilization. The triangulation angle, the projected pattern, the numerical apertures of the optical system, and the viewing angle were calculated using partial coherence imaging and geometric optical raytracing methods. Additionally, optical aberrations and defocus were considered by the integration of Zernike polynomial coefficients. The measurement system is able to measure objects with a size of 50 μm in all dimensions with an accuracy of +/- 5 μm. To manage the issue of a low depth of field while using an optical high resolution system, a wavelength dependent aperture was integrated. Thereby, we are able to control depth of field and resolution of the optical system and can use the borescope in measurement mode with high resolution and low depth of field or in inspection mode with low resolution and higher depth of field. First measurements of a demonstrator system are in good agreement with our simulations.

Historical storage budgets of organic carbon, nutrient and contaminant elements in saltmarsh sediments: Biogeochemical context for managed realignment, Humber Estuary, UK

International Nuclear Information System (INIS)

Andrews, J.E.; Samways, G.; Shimmield, G.B.

2008-01-01

Biogeochemical data from Welwick marsh (Humber Estuary, UK), an actively accreting saltmarsh, provides a decadal-centennial-scale natural analogue for likely future biogeochemical storage effects of managed realignment sites accreting either intertidal muds or saltmarsh. Marsh topographic profiles and progradation history from aerial photographs were combined with 137 Cs and niobium contamination history to establish and verify chronology and sediment mass accumulation. These data, combined with down-core measurements of particulate organic carbon (C org ), organic nitrogen (N org ), particle reactive phosphorus and selected contaminant metal (Zn, Pb, Cu, As and Nb) contents were then used to calculate sediment and chemical storage terms and to quantify changes in these over time. These data are used to help predict likely future biogeochemical storage changes at managed realignment sites in the estuary. The net effect of returning some 26 km 2 of reclaimed land to intertidal environments now (about 25% of the maximum possible realignment storage identified for the estuary) could result in the storage of some 40,000 tonnes a -1 of sediment which would also bury about 800 tonnes a -1 of C org and 40 tonnes a -1 of N org . Particulate contaminant P burial would be around 25 tonnes a -1 along with ∼ 6 tonnes a -1 contaminant Zn, 3 tonnes a -1 contaminant Pb, and ∼ 1 tonnes a -1 contaminant As and Cu. The study also shows that reclamation activities in the outer estuary since the mid-1700s has prevented, in total, the deposition of about 10 million tonnes of sediment, along with 320,000 tonnes of C org and 16,000 tonnes of N org . The study provides a mid-1990s baseline against which future measurements at the site can determine changes in burial fluxes and improvement or deterioration in contaminant metal contents of the sediments. The data are directly relevant for local managed realignment sites but also broadly indicative for sites generally on the European

Using Halogens (Cl, Br, F, I) and Stable Isotopes of Water (δ18O, δ2H) to Trace Hydrological and Biogeochemical Processes in Prairie Wetlands

Science.gov (United States)

Levy, Z. F.; Lu, Z.; Mills, C. T.; Goldhaber, M. B.; Rosenberry, D. O.; Mushet, D.; Siegel, D. I.; Fiorentino, A. J., II; Gade, M.; Spradlin, J.

2014-12-01

Prairie pothole wetlands are ubiquitous features of the Great Plains of North America, and important habitat for amphibians and migratory birds. The salinity of proximal wetlands varies highly due to groundwater-glacial till interactions, which influence wetland biota and associated ecosystem functions. Here we use halogens and stable isotopes of water to fingerprint hydrological and biogeochemical controls on salt cycling in a prairie wetland complex. We surveyed surface, well, and pore waters from a groundwater recharge wetland (T8) and more saline closed (P1) and open (P8) basin discharge wetlands in the Cottonwood Lake Study Area (ND) in August/October 2013 and May 2014. Halogen concentrations varied over a broad range throughout the study area (Cl = 2.2 to 170 mg/L, Br = 13 to 2000 μg/L, F = evaporation-enriched pond water (δ18O = -9.5 to -2.71 ‰) mixes with shallow groundwater in the top 0.6 m of fringing wetland soils and 1.2 m of the substrate in the center of P1. Our results suggest endogenous sources for Br and I within the prairie landscape that may be controlled by biological mechanisms or weathering of shale from glacial till.

Quantification of terrestrial ecosystem carbon dynamics in the conterminous United States combining a process-based biogeochemical model and MODIS and AmeriFlux data

Directory of Open Access Journals (Sweden)

M. Chen

2011-09-01

Full Text Available Satellite remote sensing provides continuous temporal and spatial information of terrestrial ecosystems. Using these remote sensing data and eddy flux measurements and biogeochemical models, such as the Terrestrial Ecosystem Model (TEM, should provide a more adequate quantification of carbon dynamics of terrestrial ecosystems. Here we use Moderate Resolution Imaging Spectroradiometer (MODIS Enhanced Vegetation Index (EVI, Land Surface Water Index (LSWI and carbon flux data of AmeriFlux to conduct such a study. We first modify the gross primary production (GPP modeling in TEM by incorporating EVI and LSWI to account for the effects of the changes of canopy photosynthetic capacity, phenology and water stress. Second, we parameterize and verify the new version of TEM with eddy flux data. We then apply the model to the conterminous United States over the period 2000–2005 at a 0.05° × 0.05° spatial resolution. We find that the new version of TEM made improvement over the previous version and generally captured the expected temporal and spatial patterns of regional carbon dynamics. We estimate that regional GPP is between 7.02 and 7.78 Pg C yr⁻¹ and net primary production (NPP ranges from 3.81 to 4.38 Pg C yr⁻¹ and net ecosystem production (NEP varies within 0.08–0.73 Pg C yr⁻¹ over the period 2000–2005 for the conterminous United States. The uncertainty due to parameterization is 0.34, 0.65 and 0.18 Pg C yr⁻¹ for the regional estimates of GPP, NPP and NEP, respectively. The effects of extreme climate and disturbances such as severe drought in 2002 and destructive Hurricane Katrina in 2005 were captured by the model. Our study provides a new independent and more adequate measure of carbon fluxes for the conterminous United States, which will benefit studies of carbon-climate feedback and facilitate policy-making of carbon management and climate.

Can Runoff Responses be Used to Predict Aquatic Biogeochemical Fluxes from Boreal Forest Ecosystems?

Science.gov (United States)

Prestegaard, K. L.; Ziegler, S. E.; Billings, S. A.; Edwards, K. A.

2017-12-01

Climate change has direct effects on precipitation and temperature, which contribute to indirect changes in ecosystem productivity, runoff, biogeochemical processes, and species composition. In this research, we examine water balances in boreal forest watersheds to determine spatial and inter-annual variations in their responses to changes in precipitation. Our research indicates that Central and Western N. American boreal watersheds with mean annual precipitation (MAP) of less than 1000 mm exhibit positive relationships between annual precipitation and annual evapotranspiration, suggesting an increase in forest productivity during wet years often without increased runoff. In Maritime boreal watersheds in Eastern N. America and N. Europe, runoff is a significantly larger portion of the water balance and runoff increases with precipitation This regionalism in the water balance may have significant consequences for biogeochemical fluxes; for example, where MAP >1000 mm, a future wetter climate may result in increases in the terrestrial-to-aquatic transport of solutes. To test this idea, we examined inter-annual variations in hydrologic and dissolved organic carbon fluxes in watersheds in Newfoundland and Labrador along a longitudinal transect. Mean annual temperature varies from 0-5.2oC along the transect, and MAP varies from 1050 to 1500 mm. Data indicate an increase in evapotranspiration, runoff, and soil DOC fluxes with the increasing mean annual precipitation among watersheds along the transect. During the 2011-2015 period of study there was significant overlap in annual precipitation among the sites. Although wet water years also produced higher amounts of runoff from most watersheds, the annual soil DOC flux within each region was not significantly affected by these inter-annual changes in precipitation. Stream and groundwater monitoring data from the catchments reveal seasonal variations in evapotranspiration and runoff and their role in solute fluxes, and

Multimillennium changes in dissolved oxygen under global warming: results from an AOGCM and offline ocean biogeochemical model

Science.gov (United States)

Yamamoto, A.; Abe-Ouchi, A.; Shigemitsu, M.; Oka, A.; Takahashi, K.; Ohgaito, R.; Yamanaka, Y.

2016-12-01

Long-term oceanic oxygen change due to global warming is still unclear; most future projections (such as CMIP5) are only performed until 2100. Indeed, few previous studies using conceptual models project oxygen change in the next thousands of years, showing persistent global oxygen reduction by about 30% in the next 2000 years, even after atmospheric carbon dioxide stops rising. Yet, these models cannot sufficiently represent the ocean circulation change: the key driver of oxygen change. Moreover, considering serious effect oxygen reduction has on marine life and biogeochemical cycling, long-term oxygen change should be projected for higher validity. Therefore, we used a coupled atmosphere-ocean general circulation model (AOGCM) and an offline ocean biogeochemical model, investigating realistic long-term changes in oceanic oxygen concentration and ocean circulation. We integrated these models for 2000 years under atmospheric CO2 doubling and quadrupling. After global oxygen reduction in the first 500 years, oxygen concentration in deep ocean globally recovers and overshoots, despite surface oxygen decrease and weaker Atlantic Meridional Overturning Circulation. Deep ocean convection in the Weddell Sea recovers and overshoots, after initial cessation. Thus, enhanced deep convection and associated Antarctic Bottom Water supply oxygen-rich surface waters to deep ocean, resulting global deep ocean oxygenation. We conclude that the change in ocean circulation in the Southern Ocean potentially drives millennial-scale oxygenation in the deep ocean; contrary to past reported long-term oxygen reduction and general expectation. In presentation, we will discuss the mechanism of response of deep ocean convection in the Weddell Sea and show the volume changes of hypoxic waters.

Mini-Sosie - a new concept in high-resolution seismic surveys

Energy Technology Data Exchange (ETDEWEB)

Wiles, C J

1977-12-01

Mini-Sosie is a new approach to high-resolution reflection seismics using a nondynamite source. The basic principles is to use an ordinary earth tamper to produce a long duration pseudo-random input pulse train. Returning signals from suitable geophone arrays are decoded in real time by crosscorrelation with the reference signal recorded from a source-sensor attached to the tamper plate. Relatively weak signals are stacked until sufficient amplitude is obtained; most noise is phased out during the decoding process while in-phase seismic events are added, resulting in good signal-to-noise ratios. The resulting output is the standard field seismogram. The source is relatively quiet and surface damage is insignificant thereby avoiding environmental restrictions. Mini-Sosie is especially useful for shallow investigation to one second (two-way time) and has a wide range of applications from shallow oil and gas exploration, coal, and hard mineral exploration to hydrology and engineering studies.

U.S. Geological Survey climate and land use change science strategy: a framework for understanding and responding to global change

Science.gov (United States)

Burkett, Virginia R.; Kirtland, David A.; Taylor, Ione L.; Belnap, Jayne; Cronin, Thomas M.; Dettinger, Michael D.; Frazier, Eldrich L.; Haines, John W.; Loveland, Thomas R.; Milly, Paul C.D.; ,; ,; ,; Robert, S.; Maule, Alec G.; McMahon, Gerard; Striegl, Robert G.

2013-01-01

The U.S. Geological Survey (USGS), a nonregulatory Federal science agency with national scope and responsibilities, is uniquely positioned to serve the Nation’s needs in understanding and responding to global change, including changes in climate, water availability, sea level, land use and land cover, ecosystems, and global biogeochemical cycles. Global change is among the most challenging and formidable issues confronting our Nation and society. Scientists agree that global environmental changes during this century will have far-reaching societal implications (Intergovernmental Panel on Climate Change, 2007; U.S. Global Change Research Program, 2009). In the face of these challenges, the Nation can benefit greatly by using natural science information in decisionmaking.

Comparison of infrared spectroscopy techniques: developing an efficient method for high resolution analysis of sediment properties from long records

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Hahn, Annette; Rosén, Peter; Kliem, Pierre; Ohlendorf, Christian; Persson, Per; Zolitschka, Bernd; Pasado Science Team

2010-05-01

The analysis of sediment samples in visible to mid-infrared spectra is ideal for high-resolution records. It requires only small amounts (0.01-0.1g dry weight) of sample material and facilitates rapid and cost efficient analysis of a wide variety of biogeochemical properties on minerogenic and organic substances (Kellner et al. 1998). One of these techniques, the Diffuse Reflectance Fourier Transform Infrared Spectrometry (DRIFTS), has already been successfully applied to lake sediment from very different settings and has shown to be a promising technique for high resolution analyses of long sedimentary records on glacial-interglacial timescales (Rosén et al. 2009). However, the DRIFTS technique includes a time-consuming step where sediment samples are mixed with KBr. To assess if alternative and more rapid infrared (IR) techniques can be used, four different IR spectroscopy techniques are compared for core catcher sediment samples from Laguna Potrok Aike - an ICDP site located in southernmost South America. Partial least square (PLS) calibration models were developed using the DRIFTS technique. The correlation coefficients (R) for correlations between DRIFTS-inferred and conventionally measured biogeochemical properties show values of 0.80 for biogenic silica (BSi), 0.95 for total organic carbon (TOC), 0.91 for total nitrogen (TN), and 0.92 for total inorganic carbon (TIC). Good statistical performance was also obtained by using the Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy ATR-FTIRS technique which requires less sample preparation. Two devices were used, the full-sized Bruker Equinox 252 and the smaller and less expensive Bruker Alpha. R for ATR-FTIRS-inferred and conventionally measured biogeochemical properties were 0.87 (BSi), 0.93 (TOC), 0.90 (TN), and 0.91 (TIC) for the Alpha, and 0.78 (TOC), 0.85 (TN), 0.79 (TIC) for the Equinox 252 device. As the penetration depth of the IR beam is frequency dependent, a firm surface contact of

Simulating temporal variations of nitrogen losses in river networks with a dynamic transport model unravels the coupled effects of hydrological and biogeochemical processes

Energy Technology Data Exchange (ETDEWEB)

Mulholland, Patrick J [ORNL; Alexander, Richard [U.S. Geological Survey; Bohlke, John [U.S. Geological Survey; Boyer, Elizabeth [Pennsylvania State University; Harvey, Judson [U.S. Geological Survey; Seitzinger, Sybil [Rutgers University; Tobias, Craig [University of North Carolina, Wilmington; Tonitto, Christina [Cornell University; Wollheim, Wilfred [University of New Hampshire

2009-01-01

The importance of lotic systems as sinks for nitrogen inputs is well recognized. A fraction of nitrogen in streamflow is removed to the atmosphere via denitrification with the remainder exported in streamflow as nitrogen loads. At the watershed scale, there is a keen interest in understanding the factors that control the fate of nitrogen throughout the stream channel network, with particular attention to the processes that deliver large nitrogen loads to sensitive coastal ecosystems. We use a dynamic stream transport model to assess biogeochemical (nitrate loadings, concentration, temperature) and hydrological (discharge, depth, velocity) effects on reach-scale denitrification and nitrate removal in the river networks of two watersheds having widely differing levels of nitrate enrichment but nearly identical discharges. Stream denitrification is estimated by regression as a nonlinear function of nitrate concentration, streamflow, and temperature, using more than 300 published measurements from a variety of US streams. These relations are used in the stream transport model to characterize nitrate dynamics related to denitrification at a monthly time scale in the stream reaches of the two watersheds. Results indicate that the nitrate removal efficiency of streams, as measured by the percentage of the stream nitrate flux removed via denitrification per unit length of channel, is appreciably reduced during months with high discharge and nitrate flux and increases during months of low-discharge and flux. Biogeochemical factors, including land use, nitrate inputs, and stream concentrations, are a major control on reach-scale denitrification, evidenced by the disproportionately lower nitrate removal efficiency in streams of the highly nitrate-enriched watershed as compared with that in similarly sized streams in the less nitrate-enriched watershed. Sensitivity analyses reveal that these important biogeochemical factors and physical hydrological factors contribute nearly

Large-area Soil Moisture Surveys Using a Cosmic-ray Rover: Approaches and Results from Australia

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Hawdon, A. A.; McJannet, D. L.; Renzullo, L. J.; Baker, B.; Searle, R.

2017-12-01

Recent improvements in satellite instrumentation has increased the resolution and frequency of soil moisture observations, and this in turn has supported the development of higher resolution land surface process models. Calibration and validation of these products is restricted by the mismatch of scales between remotely sensed and contemporary ground based observations. Although the cosmic ray neutron soil moisture probe can provide estimates soil moisture at a scale useful for the calibration and validation purposes, it is spatially limited to a single, fixed location. This scaling issue has been addressed with the development of mobile soil moisture monitoring systems that utilizes the cosmic ray neutron method, typically referred to as a `rover'. This manuscript describes a project designed to develop approaches for undertaking rover surveys to produce soil moisture estimates at scales comparable to satellite observations and land surface process models. A custom designed, trailer-mounted rover was used to conduct repeat surveys at two scales in the Mallee region of Victoria, Australia. A broad scale survey was conducted at 36 x 36 km covering an area of a standard SMAP pixel and an intensive scale survey was conducted over a 10 x 10 km portion of the broad scale survey, which is at a scale equivalent to that used for national water balance modelling. We will describe the design of the rover, the methods used for converting neutron counts into soil moisture and discuss factors controlling soil moisture variability. We found that the intensive scale rover surveys produced reliable soil moisture estimates at 1 km resolution and the broad scale at 9 km resolution. We conclude that these products are well suited for future analysis of satellite soil moisture retrievals and finer scale soil moisture models.

East Siberian Sea, an Arctic region of very high biogeochemical activity

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L. G. Anderson

2011-06-01

Full Text Available Shelf seas are among the most active biogeochemical marine environments and the East Siberian Sea is a prime example. This sea is supplied by seawater from both the Atlantic and Pacific Oceans and has a substantial input of river runoff. All of these waters contribute chemical constituents, dissolved and particulate, but of different signatures. Sea ice formation during the winter season and melting in the summer has a major impact on physical as well as biogeochemical conditions. The internal circulation and water mass distribution is significantly influenced by the atmospheric pressure field. The western region is dominated by input of river runoff from the Laptev Sea and an extensive input of terrestrial organic matter. The microbial decay of this organic matter produces carbon dioxide (CO₂ that oversaturates all waters from the surface to bottom relative to atmospheric level, even when primary production, inferred from low surface water nutrients, has occurred. The eastern surface waters were under-saturated with respect to CO₂ illustrating the dominance of marine primary production. The drawdown of dissolved inorganic carbon equals a primary production of ~0.8 ± 2 mol C m⁻², which when multiplied by half the area of the East Siberian Sea, ~500 000 km², results in an annual primary production of 0.4 (± 1 × 10¹² mol C or ~4 (± 10 × 10¹² gC. Microbial decay occurs through much of the water column, but dominates at the sediment interface where the majority of organic matter ends up, thus more of the decay products are recycled to the bottom water. High nutrient concentrations and fugacity of CO₂ and low oxygen and pH were observed in the bottom waters. Another signature of organic matter decomposition, methane (CH₄, was observed in very high but variable concentrations. This is due to its seabed sources of glacial origin or modern production from

High spatial resolution mapping of folds and fractures using Unmanned Aerial Vehicle (UAV) photogrammetry

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Cruden, A. R.; Vollgger, S.

2016-12-01

The emerging capability of UAV photogrammetry combines a simple and cost-effective method to acquire digital aerial images with advanced computer vision algorithms that compute spatial datasets from a sequence of overlapping digital photographs from various viewpoints. Depending on flight altitude and camera setup, sub-centimeter spatial resolution orthophotographs and textured dense point clouds can be achieved. Orientation data can be collected for detailed structural analysis by digitally mapping such high-resolution spatial datasets in a fraction of time and with higher fidelity compared to traditional mapping techniques. Here we describe a photogrammetric workflow applied to a structural study of folds and fractures within alternating layers of sandstone and mudstone at a coastal outcrop in SE Australia. We surveyed this location using a downward looking digital camera mounted on commercially available multi-rotor UAV that autonomously followed waypoints at a set altitude and speed to ensure sufficient image overlap, minimum motion blur and an appropriate resolution. The use of surveyed ground control points allowed us to produce a geo-referenced 3D point cloud and an orthophotograph from hundreds of digital images at a spatial resolution automatically extracted from these high-resolution datasets using open-source software. This resulted in an extensive and statistically relevant orientation dataset that was used to 1) interpret the progressive development of folds and faults in the region, and 2) to generate a 3D structural model that underlines the complex internal structure of the outcrop and quantifies spatial variations in fold geometries. Overall, our work highlights how UAV photogrammetry can contribute to new insights in structural analysis.

Towards an assessment of riverine dissolved organic carbon in surface waters of the western Arctic Ocean based on remote sensing and biogeochemical modeling

Science.gov (United States)

Le Fouest, Vincent; Matsuoka, Atsushi; Manizza, Manfredi; Shernetsky, Mona; Tremblay, Bruno; Babin, Marcel

2018-03-01

Future climate warming of the Arctic could potentially enhance the load of terrigenous dissolved organic carbon (tDOC) of Arctic rivers due to increased carbon mobilization within watersheds. A greater flux of tDOC might impact the biogeochemical processes of the coastal Arctic Ocean (AO) and ultimately its capacity to absorb atmospheric CO2. In this study, we show that sea-surface tDOC concentrations simulated by a physical-biogeochemical coupled model in the Canadian Beaufort Sea for 2003-2011 compare favorably with estimates retrieved by satellite imagery. Our results suggest that, over spring-summer, tDOC of riverine origin contributes to 35 % of primary production and that an equivalent of ˜ 10 % of tDOC is exported westwards with the potential of fueling the biological production of the eastern Alaskan nearshore waters. The combination of model and satellite data provides promising results to extend this work to the entire AO so as to quantify, in conjunction with in situ data, the expected changes in tDOC fluxes and their potential impact on the AO biogeochemistry at basin scale.

Environmental Assessment for Potential Impacts of Ocean CO2 Storage on Marine Biogeochemical Cycles

Science.gov (United States)

Yamada, N.; Tsurushima, N.; Suzumura, M.; Shibamoto, Y.; Harada, K.

2008-12-01

Ocean CO2 storage that actively utilizes the ocean potential to dissolve extremely large amounts of CO2 is a useful option with the intent of diminishing atmospheric CO2 concentration. CO2 storage into sub-seabed geological formations is also considered as the option which has been already put to practical reconnaissance in some projects. Direct release of CO2 in the ocean storage and potential CO2 leakage from geological formations into the bottom water can alter carbonate system as well as pH of seawater. It is essential to examine to what direction and extent chemistry change of seawater induced by CO2 can affect the marine environments. Previous studies have shown direct and acute effects by increasing CO2 concentrations on physiology of marine organisms. It is also a serious concern that chemistry change can affect the rates of chemical, biochemical and microbial processes in seawater resulting in significant influences on marine biogeochemical cycles of the bioelements including carbon, nutrients and trace metals. We, AIST, have conducted a series of basic researches to assess the potential impacts of ocean CO2 storage on marine biogeochemical processes including CaCO3 dissolution, and bacterial and enzymatic decomposition of organic matter. By laboratory experiments using a special high pressure apparatus, the improved empirical equation was obtained for CaCO3 dissolution rate in the high CO2 concentrations. Based on the experimentally obtained kinetics with a numerical simulation for a practical scenario of oceanic CO2 sequestration where 50 Mton CO2 per year is continuously injected to 1,000-2,500 m depth within 100 x 333 km area for 30 years, we could illustrate precise 3-D maps for the predicted distributions of the saturation depth of CaCO3, in situ Ω value and CaCO3 dissolution rate in the western North Pacific. The result showed no significant change in the bathypelagic CaCO3 flux due to chemistry change induced by ocean CO2 sequestration. Both

Biogeochemical protocols and diagnostics for the CMIP6 Ocean Model Intercomparison Project (OMIP

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J. C. Orr

2017-06-01

Full Text Available The Ocean Model Intercomparison Project (OMIP focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6. OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations vs. when integrated within fully coupled Earth system models (CMIP6. Here we detail simulation protocols and diagnostics for OMIP's biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948–2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF6 and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen. Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1 will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, CTabio and 14CTabio, to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation

Biogeochemical Protocols and Diagnostics for the CMIP6 Ocean Model Intercomparison Project (OMIP)

Science.gov (United States)

Orr, James C.; Najjar, Raymond G.; Aumont, Olivier; Bopp, Laurent; Bullister, John L.; Danabasoglu, Gokhan; Doney, Scott C.; Dunne, John P.; Dutay, Jean-Claude; Graven, Heather;

Biogeochemical protocols and diagnostics for the CMIP6 Ocean Model Intercomparison Project (OMIP)

Science.gov (United States)

Orr, James C.; Najjar, Raymond G.; Aumont, Olivier; Bopp, Laurent; Bullister, John L.; Danabasoglu, Gokhan; Doney, Scott C.; Dunne, John P.; Dutay, Jean-Claude; Graven, Heather; Griffies, Stephen M.; John, Jasmin G.; Joos, Fortunat; Levin, Ingeborg; Lindsay, Keith; Matear, Richard J.; McKinley, Galen A.; Mouchet, Anne; Oschlies, Andreas; Romanou, Anastasia; Schlitzer, Reiner; Tagliabue, Alessandro; Tanhua, Toste; Yool, Andrew

2017-06-01

The Ocean Model Intercomparison Project (OMIP) focuses on the physics and biogeochemistry of the ocean component of Earth system models participating in the sixth phase of the Coupled Model Intercomparison Project (CMIP6). OMIP aims to provide standard protocols and diagnostics for ocean models, while offering a forum to promote their common assessment and improvement. It also offers to compare solutions of the same ocean models when forced with reanalysis data (OMIP simulations) vs. when integrated within fully coupled Earth system models (CMIP6). Here we detail simulation protocols and diagnostics for OMIP's biogeochemical and inert chemical tracers. These passive-tracer simulations will be coupled to ocean circulation models, initialized with observational data or output from a model spin-up, and forced by repeating the 1948-2009 surface fluxes of heat, fresh water, and momentum. These so-called OMIP-BGC simulations include three inert chemical tracers (CFC-11, CFC-12, SF6) and biogeochemical tracers (e.g., dissolved inorganic carbon, carbon isotopes, alkalinity, nutrients, and oxygen). Modelers will use their preferred prognostic BGC model but should follow common guidelines for gas exchange and carbonate chemistry. Simulations include both natural and total carbon tracers. The required forced simulation (omip1) will be initialized with gridded observational climatologies. An optional forced simulation (omip1-spunup) will be initialized instead with BGC fields from a long model spin-up, preferably for 2000 years or more, and forced by repeating the same 62-year meteorological forcing. That optional run will also include abiotic tracers of total dissolved inorganic carbon and radiocarbon, CTabio and 14CTabio, to assess deep-ocean ventilation and distinguish the role of physics vs. biology. These simulations will be forced by observed atmospheric histories of the three inert gases and CO2 as well as carbon isotope ratios of CO2. OMIP-BGC simulation protocols are

Capturing optically important constituents and properties in a marine biogeochemical and ecosystem model

Science.gov (United States)

Dutkiewicz, S.; Hickman, A. E.; Jahn, O.; Gregg, W. W.; Mouw, C. B.; Follows, M. J.

2015-07-01

We present a numerical model of the ocean that couples a three-stream radiative transfer component with a marine biogeochemical-ecosystem component in a dynamic three-dimensional physical framework. The radiative transfer component resolves the penetration of spectral irradiance as it is absorbed and scattered within the water column. We explicitly include the effect of several optically important water constituents (different phytoplankton functional types; detrital particles; and coloured dissolved organic matter, CDOM). The model is evaluated against in situ-observed and satellite-derived products. In particular we compare to concurrently measured biogeochemical, ecosystem, and optical data along a meridional transect of the Atlantic Ocean. The simulation captures the patterns and magnitudes of these data, and estimates surface upwelling irradiance analogous to that observed by ocean colour satellite instruments. We find that incorporating the different optically important constituents explicitly and including spectral irradiance was crucial to capture the variability in the depth of the subsurface chlorophyll a (Chl a) maximum. We conduct a series of sensitivity experiments to demonstrate, globally, the relative importance of each of the water constituents, as well as the crucial feedbacks between the light field, the relative fitness of phytoplankton types, and the biogeochemistry of the ocean. CDOM has proportionally more importance at attenuating light at short wavelengths and in more productive waters, phytoplankton absorption is relatively more important at the subsurface Chl a maximum, and water molecules have the greatest contribution when concentrations of other constituents are low, such as in the oligotrophic gyres. Scattering had less effect on attenuation, but since it is important for the amount and type of upwelling irradiance, it is crucial for setting sea surface reflectance. Strikingly, sensitivity experiments in which absorption by any of the

Surface Induced Dissociation Coupled with High Resolution Mass Spectrometry Unveils Heterogeneity of a 211 kDa Multicopper Oxidase Protein Complex

Science.gov (United States)

Zhou, Mowei; Yan, Jing; Romano, Christine A.; Tebo, Bradley M.; Wysocki, Vicki H.; Paša-Tolić, Ljiljana

2018-01-01

Manganese oxidation is an important biogeochemical process that is largely regulated by bacteria through enzymatic reactions. However, the detailed mechanism is poorly understood due to challenges in isolating and characterizing these unknown enzymes. A manganese oxidase, Mnx, from Bacillus sp. PL-12 has been successfully overexpressed in active form as a protein complex with a molecular mass of 211 kDa. We have recently used surface induced dissociation (SID) and ion mobility-mass spectrometry (IM-MS) to release and detect folded subcomplexes for determining subunit connectivity and quaternary structure. The data from the native mass spectrometry experiments led to a plausible structural model of this multicopper oxidase, which has been difficult to study by conventional structural biology methods. It was also revealed that each Mnx subunit binds a variable number of copper ions. Becasue of the heterogeneity of the protein and limited mass resolution, ambiguities in assigning some of the observed peaks remained as a barrier to fully understanding the role of metals and potential unknown ligands in Mnx. In this study, we performed SID in a modified Fourier transform-ion cyclotron resonance (FTICR) mass spectrometer. The high mass accuracy and resolution offered by FTICR unveiled unexpected artificial modifications on the protein that had been previously thought to be iron bound species based on lower resolution spectra. Additionally, isotopically resolved spectra of the released subcomplexes revealed the metal binding stoichiometry at different structural levels. This method holds great potential for in-depth characterization of metalloproteins and protein-ligand complexes. [Figure not available: see fulltext.

Super-resolution biomolecular crystallography with low-resolution data.

Science.gov (United States)

Schröder, Gunnar F; Levitt, Michael; Brunger, Axel T

2010-04-22

X-ray diffraction plays a pivotal role in the understanding of biological systems by revealing atomic structures of proteins, nucleic acids and their complexes, with much recent interest in very large assemblies like the ribosome. As crystals of such large assemblies often diffract weakly (resolution worse than 4 A), we need methods that work at such low resolution. In macromolecular assemblies, some of the components may be known at high resolution, whereas others are unknown: current refinement methods fail as they require a high-resolution starting structure for the entire complex. Determining the structure of such complexes, which are often of key biological importance, should be possible in principle as the number of independent diffraction intensities at a resolution better than 5 A generally exceeds the number of degrees of freedom. Here we introduce a method that adds specific information from known homologous structures but allows global and local deformations of these homology models. Our approach uses the observation that local protein structure tends to be conserved as sequence and function evolve. Cross-validation with R(free) (the free R-factor) determines the optimum deformation and influence of the homology model. For test cases at 3.5-5 A resolution with known structures at high resolution, our method gives significant improvements over conventional refinement in the model as monitored by coordinate accuracy, the definition of secondary structure and the quality of electron density maps. For re-refinements of a representative set of 19 low-resolution crystal structures from the Protein Data Bank, we find similar improvements. Thus, a structure derived from low-resolution diffraction data can have quality similar to a high-resolution structure. Our method is applicable to the study of weakly diffracting crystals using X-ray micro-diffraction as well as data from new X-ray light sources. Use of homology information is not restricted to X

Influence of Conflict Resolution Training on Conflict Handling Styles of College Students

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Waithaka, Abel Gitimu; Moore-Austin, Shante'; Gitimu, Priscilla N.

2015-01-01

The purpose of this study was to investigate the influence of conflict resolution skills training on conflict handling styles, and conflict orientation of college students. Conflict handling styles was measured by the Thomas-Kilmann MODE instrument, while Conflict orientation was measured by conflict orientation survey instrument. A sample of 135…

AERIAL SURVEYING UAV BASED ON OPEN-SOURCE HARDWARE AND SOFTWARE

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J. Mészáros

2012-09-01

Full Text Available In the last years the functionality and type of UAV-systems increased fast, but unfortunately these systems are hardly available for researchers in some cases. A simple and low-cost solution was developed to build an autonomous aerial surveying airplane, which can fulfil the necessities (aerial photographs with very-high resolution of other departments at the university and very useful and practical for teaching photogrammetry.. The base was a commercial, remote controlled model airplane and an open-source GPS/IMU system (MatrixPilot was adapted to achieve the semi-automatic or automatic stabilization and navigation of the model airplane along predefined trajectory. The firmware is completely open-source and easily available on the website of the project. The first used camera system was a low-budget, low-quality video camera, which could provide only 1.2 megapixel photographs or low resolution video depending on the light conditions and the desired spatial resolution. A field measurement test was carried out with the described system: the aerial surveying of an undiscovered archaeological site, signed by a crop-mark in mountain Pilis (Hungary.

Vertical Cable Seismic Survey for Hydrothermal Deposit

Science.gov (United States)

Asakawa, E.; Murakami, F.; Sekino, Y.; Okamoto, T.; Ishikawa, K.; Tsukahara, H.; Shimura, T.

2012-04-01

The vertical cable seismic is one of the reflection seismic methods. It uses hydrophone arrays vertically moored from the seafloor to record acoustic waves generated by surface, deep-towed or ocean bottom sources. Analyzing the reflections from the sub-seabed, we could look into the subsurface structure. This type of survey is generally called VCS (Vertical Cable Seismic). Because VCS is an efficient high-resolution 3D seismic survey method for a spatially-bounded area, we proposed the method for the hydrothermal deposit survey tool development program that the Ministry of Education, Culture, Sports, Science and Technology (MEXT) started in 2009. We are now developing a VCS system, including not only data acquisition hardware but data processing and analysis technique. Our first experiment of VCS surveys has been carried out in Lake Biwa, JAPAN in November 2009 for a feasibility study. Prestack depth migration is applied to the 3D VCS data to obtain a high quality 3D depth volume. Based on the results from the feasibility study, we have developed two autonomous recording VCS systems. After we carried out a trial experiment in the actual ocean at a water depth of about 400m and we carried out the second VCS survey at Iheya Knoll with a deep-towed source. In this survey, we could establish the procedures for the deployment/recovery of the system and could examine the locations and the fluctuations of the vertical cables at a water depth of around 1000m. The acquired VCS data clearly shows the reflections from the sub-seafloor. Through the experiment, we could confirm that our VCS system works well even in the severe circumstances around the locations of seafloor hydrothermal deposits. We have, however, also confirmed that the uncertainty in the locations of the source and of the hydrophones could lower the quality of subsurface image. It is, therefore, strongly necessary to develop a total survey system that assures a accurate positioning and a deployment techniques

Biogeochemical and hydrological controls on fate and distribution of trace metals in oiled Gulf salt marshes

Science.gov (United States)

Keevan, J.; Natter, M.; Lee, M.; Keimowitz, A.; Okeke, B.; Savrda, C.; Saunders, J.

2011-12-01

On April 20, 2010, the drilling rig Deepwater Horizon exploded in the Gulf of Mexico, resulting in the release of approximately 5 million barrels of crude oil into the environment. Oil and its associated trace metals have been demonstrated to have a detrimental effect on coastal wetland ecosystems. Wetlands are particularly susceptible to oil contamination because they are composed largely of fine-grained sediments, which have a high capacity to adsorb organic matter and metals. The biogeochemical cycling of trace metals can be strongly influenced by microbial activity, specifically those of sulfate- and iron-reducing bacteria. Microbial activity may be enhanced by an increase in amounts of organic matter such as oil. This research incorporates an assessment of levels of trace metals and associated biogeochemical changes from ten coastal marshes in Alabama, Mississippi, and Louisiana. These sampling sites range in their pollution levels from pristine to highly contaminated. A total digestion analysis of wetland sediments shows higher concentrations of certain trace metals (e.g., Ni, Cu, Pb, Zn, Sr, Co, V, Ba, Hg, As) in heavily-oiled areas compared to less-affected and pristine sites. Due to chemical complexation among organic compounds and metals, crude oils often contain elevated levels (up to hundreds of mg/kg) of trace metals At the heavily-oiled Louisiana sites (e.g., Bay Jimmy, Bayou Dulac, Bay Batiste), elevated levels of metals and total organic carbon have been found in sediments down to depths of 30 cm. Clearly the contamination is not limited to shallow sediments and oil, along with various associated metals, may be invading into deeper (pre-industrial) portions of the marsh sediments. Pore-waters extracted from contaminated sediments are characterized by very high levels of reduced sulfur (up to 80 mg/kg), in contrast to fairly low ferrous iron concentrations (<0.02 mg/kg). The influx of oil into the wetlands might provide the initial substrate and

High-resolution CT with histopathological correlates of the classic metaphyseal lesion of infant abuse

Energy Technology Data Exchange (ETDEWEB)

Tsai, Andy; Kleinman, Paul K. [Boston Children' s Hospital, Department of Radiology, Boston, MA (United States); McDonald, Anna G. [Office of the Chief Medical Examiner, Boston, MA (United States); Rosenberg, Andrew E. [University of Miami Hospital, Department of Pathology, Miami, FL (United States); Gupta, Rajiv [Massachusetts General Hospital, Department of Radiology, Boston, MA (United States)

2014-02-15

The classic metaphyseal lesion (CML) is a common high specificity indicator of infant abuse and its imaging features have been correlated histopathologically in infant fatalities. High-resolution CT imaging and histologic correlates were employed to (1) characterize the normal infant anatomy surrounding the chondro-osseous junction, and (2) confirm the 3-D model of the CML previously inferred from planar radiography and histopathology. Long bone specimens from 5 fatally abused infants, whose skeletal survey showed definite or suspected CMLs, were studied postmortem. After skeletal survey, selected specimens were resected and imaged with high-resolution digital radiography. They were then scanned with micro-CT (isotropic resolution of 45 μm{sup 3}) or with high-resolution flat-panel CT (isotropic resolutions of 200 μm{sup 3}). Visualization of the bony structures was carried out using image enhancement, segmentation and isosurface extraction, together with volume rendering and multiplanar reformatting. These findings were then correlated with histopathology. Study of normal infant bone clarifies the 3-D morphology of the subperiosteal bone collar (SPBC) and the radiographic zone of provisional calcification (ZPC). Studies on specimens with CML confirm that this lesion is a fracture extending in a planar fashion through the metaphysis, separating a mineralized fragment. This disk-like mineralized fragment has two components: (1) a thick peripheral component encompassing the SPBC; and (2) a thin central component comprised predominantly of the radiologic ZPC. By manipulating the 3-D model, the varying appearances of the CML are displayed. High-resolution CT coupled with histopathology provides elucidation of the morphology of the CML, a strong indicator of infant abuse. This new information may prove useful in assessing the biomechanical factors that produce this strong indicator of abusive assaults in infants. (orig.)

High-resolution CT with histopathological correlates of the classic metaphyseal lesion of infant abuse

International Nuclear Information System (INIS)

Tsai, Andy; Kleinman, Paul K.; McDonald, Anna G.; Rosenberg, Andrew E.; Gupta, Rajiv

2014-01-01

The classic metaphyseal lesion (CML) is a common high specificity indicator of infant abuse and its imaging features have been correlated histopathologically in infant fatalities. High-resolution CT imaging and histologic correlates were employed to (1) characterize the normal infant anatomy surrounding the chondro-osseous junction, and (2) confirm the 3-D model of the CML previously inferred from planar radiography and histopathology. Long bone specimens from 5 fatally abused infants, whose skeletal survey showed definite or suspected CMLs, were studied postmortem. After skeletal survey, selected specimens were resected and imaged with high-resolution digital radiography. They were then scanned with micro-CT (isotropic resolution of 45 μm 3 ) or with high-resolution flat-panel CT (isotropic resolutions of 200 μm 3 ). Visualization of the bony structures was carried out using image enhancement, segmentation and isosurface extraction, together with volume rendering and multiplanar reformatting. These findings were then correlated with histopathology. Study of normal infant bone clarifies the 3-D morphology of the subperiosteal bone collar (SPBC) and the radiographic zone of provisional calcification (ZPC). Studies on specimens with CML confirm that this lesion is a fracture extending in a planar fashion through the metaphysis, separating a mineralized fragment. This disk-like mineralized fragment has two components: (1) a thick peripheral component encompassing the SPBC; and (2) a thin central component comprised predominantly of the radiologic ZPC. By manipulating the 3-D model, the varying appearances of the CML are displayed. High-resolution CT coupled with histopathology provides elucidation of the morphology of the CML, a strong indicator of infant abuse. This new information may prove useful in assessing the biomechanical factors that produce this strong indicator of abusive assaults in infants. (orig.)

A review of ion and metal pollutants in urban green water infrastructures.

Science.gov (United States)

Kabir, Md Imran; Daly, Edoardo; Maggi, Federico

2014-02-01

In urban environments, the breakdown of chemicals and pollutants, especially ions and metal compounds, can be favoured by green water infrastructures (GWIs). The overall aim of this review is to set the basis to model GWIs using deterministic approaches in contrast to empirical ones. If a better picture of chemicals and pollutant input and an improved understanding of hydrological and biogeochemical processes affecting these pollutants were known, GWIs could be designed to efficiently retain these pollutants for site-specific meteorological patterns and pollutant load. To this end, we surveyed the existing literature to retrieve a comprehensive dataset of anions and cations, and alkaline and transition metal pollutants incoming to urban environments. Based on this survey, we assessed the pollution load and ecological risk indexes for metals. The existing literature was then surveyed to review the metal retention efficiency of GWIs, and possible biogeochemical processes related to inorganic metal compounds were proposed that could be integrated in biogeochemical models of GWIs. © 2013.

Dust from southern Africa: rates of emission and biogeochemical properties

Science.gov (United States)

Bhattachan, A.; D'Odorico, P.; Zobeck, T. M.; Okin, G. S.; Dintwe, K.

2012-12-01

The stabilized linear dunefields in the southern Kalahari show signs of reactivation due to reduced vegetation cover owing to drought and/or overgrazing. It has been demonstrated with a laboratory dust generator that the southern Kalahari soils are good emitters of dust and that large-scale dune reactivation can potentially make the region an important dust source in the relatively low-dust Southern Hemisphere. We show that emergence of the southern Kalahari as a new dust source may affect ocean biogeochemistry as the soils are rich in soluble iron and the dust from the southern Kalahari commonly reaches the Southern Ocean. We investigate the biogeochemical properties of the fine fraction of soil from the Kalahari dunes and compare them to those of currently active dust sources such as the Makgadikgadi and the Etosha pans as well as other smaller pans in the region. Using field measurements of sediment fluxes and satellite images, we calculate the rates of dust emission from the southern Kalahari under different land cover scenarios. To assess the reversibility of dune reactivation in the southern Kalahari, we investigate the resilience of dunefield vegetation by looking at changes in soil nutrients, fine soil fractions, and seed bank in areas affected by intense denudation.

Biogeochemical processes controlling density stratification in an iron-meromictic lake

Science.gov (United States)

Nixdorf, E.; Boehrer, B.

2015-06-01

Biogeochemical processes and mixing regime of a lake can control each other mutually. The prominent case of iron meromixis is investigated in Waldsee near Doebern, a small lake that originated from surface mining of lignite. From a four years data set of monthly measured electrical conductivity profiles, we calculated summed conductivity as a quantitative variable reflecting the amount of electro-active substances in the entire lake. Seasonal variations followed changing chemocline height. Coinciding changes of electrical conductivities in the monimolimnion indicated that a considerable share of substances, precipitated by the advancing oxygenated epilimnion, re-dissolved in the remaining anoxic deep waters and contributed considerably to the density stratification. In addition, we constructed a lab experiment, in which aeration of monimolimnetic waters removed iron compounds and organic material. Precipitates could be identified by visual inspection. Introduced air bubbles ascended through the water column and formed a water mass similar to the mixolimnetic Waldsee water. The remaining less dense water remained floating on the nearly unchanged monimolimnetic water. In conclusion, iron meromixis as seen in Waldsee did not require two different sources of incoming waters, but the inflow of iron rich deep groundwater and the aeration through the lake surface were fully sufficient.

PHAT STELLAR CLUSTER SURVEY. I. YEAR 1 CATALOG AND INTEGRATED PHOTOMETRY

International Nuclear Information System (INIS)

Johnson, L. Clifton; Dalcanton, Julianne J.; Fouesneau, Morgan; Hodge, Paul W.; Weisz, Daniel R.; Williams, Benjamin F.; Beerman, Lori C.; Seth, Anil C.; Caldwell, Nelson; Gouliermis, Dimitrios A.; Larsen, Søren S.; Olsen, Knut A. G.; San Roman, Izaskun; Sarajedini, Ata; Bianchi, Luciana; Dolphin, Andrew E.; Girardi, Léo; Guhathakurta, Puragra; Kalirai, Jason; Lang, Dustin

2012-01-01

The Panchromatic Hubble Andromeda Treasury (PHAT) survey is an ongoing Hubble Space Telescope (HST) multi-cycle program to obtain high spatial resolution imaging of one-third of the M31 disk at ultraviolet through near-infrared wavelengths. In this paper, we present the first installment of the PHAT stellar cluster catalog. When completed, the PHAT cluster catalog will be among the largest and most comprehensive surveys of resolved star clusters in any galaxy. The exquisite spatial resolution achieved with HST has allowed us to identify hundreds of new clusters that were previously inaccessible with existing ground-based surveys. We identify 601 clusters in the Year 1 sample, representing more than a factor of four increase over previous catalogs within the current survey area (390 arcmin 2 ). This work presents results derived from the first ∼25% of the survey data; we estimate that the final sample will include ∼2500 clusters. For the Year 1 objects, we present a catalog with positions, radii, and six-band integrated photometry. Along with a general characterization of the cluster luminosities and colors, we discuss the cluster luminosity function, the cluster size distributions, and highlight a number of individually interesting clusters found in the Year 1 search.

PHAT STELLAR CLUSTER SURVEY. I. YEAR 1 CATALOG AND INTEGRATED PHOTOMETRY

Energy Technology Data Exchange (ETDEWEB)

Johnson, L. Clifton; Dalcanton, Julianne J.; Fouesneau, Morgan; Hodge, Paul W.; Weisz, Daniel R.; Williams, Benjamin F.; Beerman, Lori C. [Department of Astronomy, University of Washington, Box 351580, Seattle, WA 98195 (United States); Seth, Anil C. [Department of Physics and Astronomy, University of Utah, Salt Lake City, UT 84112 (United States); Caldwell, Nelson [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Gouliermis, Dimitrios A. [Institut fuer Theoretische Astrophysik, Zentrum fuer Astronomie der Universitaet Heidelberg, Albert-Ueberle-Strasse 2, D-69120 Heidelberg (Germany); Larsen, Soren S. [Department of Astrophysics, IMAPP, Radboud University Nijmegen, P.O. Box 9010, 6500 GL Nijmegen (Netherlands); Olsen, Knut A. G. [National Optical Astronomy Observatory, 950 North Cherry Avenue, Tucson, AZ 85719 (United States); San Roman, Izaskun; Sarajedini, Ata [Department of Astronomy, University of Florida, 211 Bryant Space Science Center, Gainesville, FL 32611-2055 (United States); Bianchi, Luciana [Department of Physics and Astronomy, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218 (United States); Dolphin, Andrew E. [Raytheon Company, 1151 East Hermans Road, Tucson, AZ 85756 (United States); Girardi, Leo [Osservatorio Astronomico di Padova-INAF, Vicolo dell' Osservatorio 5, I-35122 Padova (Italy); Guhathakurta, Puragra [Department of Astronomy and Astrophysics, University of California Observatories/Lick Observatory, University of California, 1156 High Street, Santa Cruz, CA 95064 (United States); Kalirai, Jason [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Lang, Dustin, E-mail: lcjohnso@astro.washington.edu [Department of Astrophysical Sciences, Princeton University, Princeton, NJ 08544 (United States); and others

2012-06-20

The Panchromatic Hubble Andromeda Treasury (PHAT) survey is an ongoing Hubble Space Telescope (HST) multi-cycle program to obtain high spatial resolution imaging of one-third of the M31 disk at ultraviolet through near-infrared wavelengths. In this paper, we present the first installment of the PHAT stellar cluster catalog. When completed, the PHAT cluster catalog will be among the largest and most comprehensive surveys of resolved star clusters in any galaxy. The exquisite spatial resolution achieved with HST has allowed us to identify hundreds of new clusters that were previously inaccessible with existing ground-based surveys. We identify 601 clusters in the Year 1 sample, representing more than a factor of four increase over previous catalogs within the current survey area (390 arcmin{sup 2}). This work presents results derived from the first {approx}25% of the survey data; we estimate that the final sample will include {approx}2500 clusters. For the Year 1 objects, we present a catalog with positions, radii, and six-band integrated photometry. Along with a general characterization of the cluster luminosities and colors, we discuss the cluster luminosity function, the cluster size distributions, and highlight a number of individually interesting clusters found in the Year 1 search.

Formaldehyde in Alcoholic Beverages: Large Chemical Survey Using Purpald Screening Followed by Chromotropic Acid Spectrophotometry with Multivariate Curve Resolution

Directory of Open Access Journals (Sweden)

Julien A. Jendral

2011-01-01

Full Text Available A strategy for analyzing formaldehyde in beer, wine, spirits, and unrecorded alcohol was developed, and 508 samples from worldwide origin were analyzed. In the first step, samples are qualitatively screened using a simple colorimetric test with the purpald reagent, which is extremely sensitive for formaldehyde (detection limit 0.1 mg/L. 210 samples (41% gave a positive purpald reaction. In the second step, formaldehyde in positive samples is confirmed by quantitative spectrophotometry of the chromotropic acid-formaldehyde derivative combined with Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS. Calculation of UV-VIS and 13C NMR spectra confirmed the monocationic dibenzoxanthylium structure as the product of the reaction and disproved the widely cited para,para-quinoidal structure. Method validation for the spectrophotometric procedure showed a detection limit of 0.09 mg/L and a precision of 4.2–8.2% CV. In total, 132 samples (26% contained formaldehyde with an average of 0.27 mg/L (range 0–14.4 mg/L. The highest incidence occurred in tequila (83%, Asian spirits (59%, grape marc (54%, and brandy (50%. Our survey showed that only 9 samples (1.8% had formaldehyde levels above the WHO IPCS tolerable concentration of 2.6 mg/L.

Formaldehyde in alcoholic beverages: large chemical survey using purpald screening followed by chromotropic Acid spectrophotometry with multivariate curve resolution.

Science.gov (United States)

Jendral, Julien A; Monakhova, Yulia B; Lachenmeier, Dirk W

2011-01-01

A strategy for analyzing formaldehyde in beer, wine, spirits, and unrecorded alcohol was developed, and 508 samples from worldwide origin were analyzed. In the first step, samples are qualitatively screened using a simple colorimetric test with the purpald reagent, which is extremely sensitive for formaldehyde (detection limit 0.1 mg/L). 210 samples (41%) gave a positive purpald reaction. In the second step, formaldehyde in positive samples is confirmed by quantitative spectrophotometry of the chromotropic acid-formaldehyde derivative combined with Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS). Calculation of UV-VIS and (13)C NMR spectra confirmed the monocationic dibenzoxanthylium structure as the product of the reaction and disproved the widely cited para,para-quinoidal structure. Method validation for the spectrophotometric procedure showed a detection limit of 0.09 mg/L and a precision of 4.2-8.2% CV. In total, 132 samples (26%) contained formaldehyde with an average of 0.27 mg/L (range 0-14.4 mg/L). The highest incidence occurred in tequila (83%), Asian spirits (59%), grape marc (54%), and brandy (50%). Our survey showed that only 9 samples (1.8%) had formaldehyde levels above the WHO IPCS tolerable concentration of 2.6 mg/L.

The RINGS Survey. III. Medium-resolution Hα Fabry–Pérot Kinematic Data Set

Science.gov (United States)

Mitchell, Carl J.; Sellwood, J. A.; Williams, T. B.; Spekkens, Kristine; Kuzio de Naray, Rachel; Bixel, Alex

2018-03-01

The distributions of stars, gas, and dark matter in disk galaxies provide important constraints on galaxy formation models, particularly on small spatial scales (spiral galaxies. For each of these galaxies, we obtain and model Hα and H I 21 cm spectroscopic data as well as multi-band photometric data. We intend to use these models to explore the underlying structure and evolution of these galaxies in a cosmological context, as well as whether the predictions of ΛCDM are consistent with the mass distributions of these galaxies. In this paper, we present spectroscopic imaging data for 14 of the RINGS galaxies observed with the medium spectral resolution Fabry–Pérot etalon on the Southern African Large Telescope. From these observations, we derive high spatial resolution line-of-sight velocity fields of the Hα line of excited hydrogen, as well as maps and azimuthally averaged profiles of the integrated Hα and [N II] emission and oxygen abundances. We then model these kinematic maps with axisymmetric models, from which we extract rotation curves and projection geometries for these galaxies. We show that our derived rotation curves agree well with other determinations, and the similarity of the projection angles with those derived from our photometric images argues against these galaxies having intrinsically oval disks.

High-resolution aeromagnetic survey in the area of Arima-Takatsuki-Rokko active fault system; Arima Takatsuki Rokko katsudanso chiiki ni okeru komitsudo kuchu jiki tansa

Energy Technology Data Exchange (ETDEWEB)

Nakatsuka, T; Okuma, S; Morijiri, R; Makino, M [Geological Survey of Japan, Tsukuba (Japan)

1996-10-01

High-resolution aeromagnetic survey was conducted in December, 1995, over the area of Arima-Takatsuki-Rokko active fault system, where the 1995 Hyogo-South (Kobe) earthquake took place. Based on the surveyed data, the magnetic anomaly distribution in the Kei-Hanshin district was illustrated. Features of magnetic anomaly observed in it were discussed. Influence of artificial structures in the coastal zone of Kobe City was tried to be removed. Distinct magnetic anomaly observed in the center of Kyoto City was located at the southern part near Shijo-Karasuma. This was mainly affected by the artificial structure. A high magnetic anomaly with a long wave length was observed in the southern part of Kyoto. There was a high magnetic anomaly in an area surrounded by central cities of Nishinomiya-Toyonaka district. At the location where positive and negative magnetic anomalies were illustrated in NEDO`s map in the coastal zone of Kobe City, the anomaly pattern was clarified. The influence of artificial structure was approximated using a point dipole. The dipole was placed in each block having a magnetic anomaly. The parameter was determined by the inverse analysis, to remove the influence. Consequently, most of magnetic anomalies due to artificial structures could be removed. 6 figs.

3D laser imaging for ODOT interstate network at true 1-mm resolution.

Science.gov (United States)

2014-12-01

With the development of 3D laser imaging technology, the latest iteration of : PaveVision3D Ultra can obtain true 1mm resolution 3D data at full-lane coverage in all : three directions at highway speed up to 60MPH. This project provides rapid survey ...

How does global biogeochemical cycle become complicated by terrestrial-aquatic interactions ?

Science.gov (United States)

Nakayama, Tadanobu; Maksyutov, Shamil

2015-04-01

Inland water such as river and lake are now known to be important and active components of global carbon cycle though its contribution has remained uncertain due to data scarcity (Battin et al., 2009; Aufdenkampe et al., 2011). The author has developed process-based National Integrated Catchment-based Eco-hydrology (NICE) model (Nakayama, 2008a-b, 2010, 2011a-b, 2012a-c, 2013; Nakayama and Fujita, 2010; Nakayama and Hashimoto, 2011; Nakayama and Shankman, 2013a-b; Nakayama and Watanabe, 2004, 2006, 2008a-b; Nakayama et al., 2006, 2007, 2010, 2012), which incorporates surface-groundwater interactions, includes up- and down-scaling processes between local-global scales, and can simulate iteratively nonlinear feedback between hydrologic, geomorphic, and ecological processes. In this study, NICE was coupled with various biogeochemical models to incorporate biogeochemical cycle including reaction between inorganic and organic carbons (DOC, POC, DIC, pCO2, etc.) in terrestrial and aquatic ecosystems including surface water and groundwater. The coupled model simulated CO2 evasion from inland water in global scale, was relatively in good agreement in that estimated by empirical regression model (Raymond et al., 2013). In particular, the simulated result implied importance of connectivity between terrestrial and aquatic ecosystems in addition to surface and groundwater, and hillslopes and stream channels, etc. The model further improved the accuracy of CH4 flux in wetland which is sensitive to fluctuations of shallow groundwater because the original NICE incorporates 3-D groundwater sub-model and simulates lateral subsurface flow more reasonably. This simulation system would play important role in integration of greenhouse gas budget of the biosphere, quantification of hot spots in boundless biogeochemical cycle, and bridging gap between top-down and bottom-up approaches (Cole et al., 2007; Frei et al., 2012; Kiel and Cardenas, 2014). References; Aufdenkampe, A.K., et al

Investigating the Role of Biogeochemical Processes in the Northern High Latitudes on Global Climate Feedbacks Using an Efficient Scalable Earth System Model

Energy Technology Data Exchange (ETDEWEB)

Jain, Atul K. [Univ. of Illinois, Urbana-Champaign, IL (United States)

2016-09-14

The overall objectives of this DOE funded project is to combine scientific and computational challenges in climate modeling by expanding our understanding of the biogeophysical-biogeochemical processes and their interactions in the northern high latitudes (NHLs) using an earth system modeling (ESM) approach, and by adopting an adaptive parallel runtime system in an ESM to achieve efficient and scalable climate simulations through improved load balancing algorithms.

EBSD spatial resolution for detecting sigma phase in steels

Energy Technology Data Exchange (ETDEWEB)

Bordín, S. Fernandez; Limandri, S. [Instituto de Física Enrique Gaviola, CONICET. M. Allende s/n, Ciudad Universitaria, 5000 Córdoba (Argentina); Ranalli, J.M. [Comisión Nacional de Energía Atómica, Av. Gral. Paz 1499, San Martín, 1650 Buenos Aires (Argentina); Castellano, G. [Instituto de Física Enrique Gaviola, CONICET. M. Allende s/n, Ciudad Universitaria, 5000 Córdoba (Argentina)

2016-12-15

The spatial resolution of the electron backscatter diffraction signal is explored by Monte Carlo simulation for the sigma phase in steel at a typical instrumental set-up. In order to estimate the active volume corresponding to the diffracted electrons, the fraction of the backscattered electrons contributing to the diffraction signal was inferred by extrapolating the Kikuchi pattern contrast measured by other authors, as a function of the diffracted electron energy. In the resulting estimation, the contribution of the intrinsic incident beam size and the software capability to deconvolve patterns were included. A strong influence of the beam size on the lateral resolution was observed, resulting in 20 nm for the aperture considered. For longitudinal and depth directions the resolutions obtained were 75 nm and 16 nm, respectively. The reliability of this last result is discussed in terms of the survey of the last large-angle deflection undergone by the backscattered electrons involved in the diffraction process. Bearing in mind the mean transversal resolution found, it was possible to detect small area grains of sigma phase by EBSD measurements, for a stabilized austenitic AISI 347 stainless steel under heat treatments, simulating post welding (40 h at 600 °C) and aging (284 h at 484 °C) effects—as usually occurring in nuclear reactor pressure vessels. - Highlights: • EBSD spatial resolution is studied by Monte Carlo simulation for σ-phase in steel. • The contribution of the intrinsic incident beam size was included. • A stabilized austenitic stainless steel under heat treatments was measured by EBSD. • With the transversal resolution found, small area σ-phase grains could be identified.

A positive and multi-element conserving time stepping scheme for biogeochemical processes in marine ecosystem models

Science.gov (United States)

Radtke, H.; Burchard, H.

2015-01-01

In this paper, an unconditionally positive and multi-element conserving time stepping scheme for systems of non-linearly coupled ODE's is presented. These systems of ODE's are used to describe biogeochemical transformation processes in marine ecosystem models. The numerical scheme is a positive-definite modification of the Runge-Kutta method, it can have arbitrarily high order of accuracy and does not require time step adaption. If the scheme is combined with a modified Patankar-Runge-Kutta method from Burchard et al. (2003), it also gets the ability to solve a certain class of stiff numerical problems, but the accuracy is restricted to second-order then. The performance of the new scheme on two test case problems is shown.

Relative Linkages of Chlorophyll-a with the Hydroclimatic and Biogeochemical Variables across the Continental U.S. (CONUS)

Science.gov (United States)

Ahmed, M. H.; Abdul-Aziz, O. I.

2017-12-01

Chlorophyll-a (Chl-a) is a key indicator for stream water quality and ecological health. The characterization of interplay between Chl-a and its numerous hydroclimatic and biogeochemical drivers is complex, and often involves multicollinear datasets. A systematic data analytics methodology was employed to determine the relative linkages of stream Chl-a with its dynamic environmental drivers at 50 stream water quality monitoring stations across the continental U.S. Multivariate statistical techniques of principal component analysis (PCA) and factor analysis (FA), in concert with Pearson correlation analysis, were applied to evaluate interrelationships among hydroclimatic, biogeochemical, and biological variables. Power-law based partial least square regression (PLSR) models were developed with a bootstrap Monte Carlo procedure (1000 iterations) to reliably estimate the comparative linkages of Chl-a by resolving multicollinearity in the data matrices (Nash-Sutcliff efficiency = 0.50-87). The data analytics suggested four environmental regimes of stream Chl-a, as dominated by nutrient, climate, redox, and hydro-atmospheric contributions, respectively. Total phosphorous (TP) was the most dominant driver of stream Chl-a in the nutrient controlled regime. Water temperature demonstrated the strongest control of Chl-a in the climate-dominated regime. Furthermore, pH and stream flow were found to be the most important drivers of Chl-a in the redox and hydro-atmospheric component dominated regimes, respectively. The research led to a significant reduction of dimensionality in the large data matrices, providing quantitative and qualitative insights on the dynamics of stream Chl-a. The findings would be useful to manage stream water quality and ecosystem health in the continental U.S. and around the world under a changing climate and environment.

A Biogeochemical Oceanographer at Sea: My Life with Nitrogen and a Nod to Silica

Science.gov (United States)

Dugdale, Richard C.

2018-01-01

My evolution from electrical engineering student to limnologist and then to oceanographer was a consequence of generous mentoring, which led to my use of the 15N tracer technique to measure nitrogen fixation in aquatic systems. The concept of new and regenerated production arose when I applied this method to measure nitrate and ammonium uptake in marine ecosystems. I then showed that enzyme kinetics could be applied to algal nitrogen uptake and used a silicate pump to explain silicate limitation of diatoms in coastal and equatorial upwelling systems. These concepts are now recognized as modern nutrient paradigms in biogeochemical oceanography. My interest in nutrients required field studies and led to my passion for the study of upwelling ecosystems and the establishment of two major international programs, with numerous advisors, collaborators, and students helping along the way.

Diazotroph-Bacterial Community Structure of Root Nodules Account for Two-Fold Differences in Plant Growth: Consequences for Global Biogeochemical Cycles

Science.gov (United States)

Williams, M. A.

2016-12-01

The bacterial communities that inhabit and function as mutualists in the nodules of soybean, a major worldwide crop, are a fundamental determinant of plant growth and global nitrogen and carbon cycles. Unfertilized soybean can derive up to 90% of its nitrogen through bacterial-driven diazotrophy. It was the goal of the research in this study to assess whether different bacterial taxa (e.g. Bradyrhizobia spp.) differ in their soybean growth supportive role, which could then feedback to alter global biogeochemical cycling. Using 16S rRNA and NifH genes, nodule bacterial communities were shown to vary across 9 different cultivars of soybean, and that the variation between cultivars were highly correlated to plant yield (97 to 188 bu/Ha) and nitrogen. The relative abundances of gene sequences associated with the closest taxonomic match (NCBI), indicated that several taxa were (r= 0.76) negatively (e.g. Bradyrhizobium sp Ec3.3) or (r= 0.84) positively (e.g. Bradyrhizobium elkanii WSM 2783) correlated with plant yield. Other non-Rhizobiaceae taxa, such as Rhodopseudomonas spp. were also prevalent and correlated with plant yield. Soybeans and other leguminous crops will become increasingly important part of world food production, soil fertility and global biogeochemical cycles with rising population and food demand. The study demonstrates the importance of plant-microbial feedbacks driving plant growth but also ramifications for global cycling of nitrogen and carbon.

High-resolution seismic survey for the characterization of planned PIER-ICDP fluid-monitoring sites in the Eger Rift zone

Science.gov (United States)

Simon, H.; Buske, S.

2017-12-01

The Eger Rift zone (Czech Republic) is a intra-continental non-volcanic region and is characterized by outstanding geodynamic activities, which result in earthquake swarms and significant CO2 emanations. Because fluid-induced stress can trigger earthquake swarms, both natural phenomena are probably related to each other. The epicentres of the earthquake swarms cluster at the northern edge of the Cheb Basin. Although the location of the cluster coincides with the major Mariánské-Lázně Fault Zone (MLFZ) the strike of the focal plane indicates another fault zone, the N-S trending Počátky-Plesná Zone (PPZ). Isotopic analysis of the CO2-rich fluids revealed a significant portion of upper mantle derived components, hence a magmatic fluid source in the upper mantle was postulated. Because of these phenomena, the Eger Rift area is a unique site for interdisciplinary drilling programs to study the fluid-earthquake interaction. The ICDP project PIER (Probing of Intra-continental magmatic activity: drilling the Eger Rift) will set up an observatory, consisting of five monitoring boreholes. In preparation for the drilling, the goal of the seismic survey is the characterization of the projected fluid-monitoring drill site at the CO2 degassing mofette field near Hartoušov. This will be achieved by a 6 km long profile with dense source and receiver spacing. The W-E trending profile will cross the proposed drill site and the surface traces of MLFZ and PPZ. The outcome of the seismic survey will be a high-resolution structural image of potential reflectors related to these fault zones. This will be achieved by the application of advanced pre-stack depth migration methods and a detailed P-wave velocity distribution of the area obtained from first arrival tomography. During interpretation of the seismic data, a geoelectrical resistivity model, acquired along the same profile line, will provide important constraints, especially with respect to fluid pathways.

Physical, biogeochemical, and fisheries data from the Association of Primary Production and Recruitment in Subarctic Ecosystems (APPRISE) project in Auke Bay, Alaska, from 1985 to 1989 (NODC Accession 9800068)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Technical data reports with tabulized sets of physical, bio-geo-chemical, and fisheries data were obtained from Dr. David Ziemann of Oceanic Institute on Oahu,...

40 CFR 22.18 - Quick resolution; settlement; alternative dispute resolution.

Science.gov (United States)

2010-07-01

...; alternative dispute resolution. 22.18 Section 22.18 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY...; alternative dispute resolution. (a) Quick resolution. (1) A respondent may resolve the proceeding at any time... complaint. (d) Alternative means of dispute resolution. (1) The parties may engage in any process within the...

Integrating stations from the North America Gravity Database into a local GPS-based land gravity survey

Science.gov (United States)

Shoberg, Thomas G.; Stoddard, Paul R.

2013-01-01

The ability to augment local gravity surveys with additional gravity stations from easily accessible national databases can greatly increase the areal coverage and spatial resolution of a survey. It is, however, necessary to integrate such data seamlessly with the local survey. One challenge to overcome in integrating data from national databases is that these data are typically of unknown quality. This study presents a procedure for the evaluation and seamless integration of gravity data of unknown quality from a national database with data from a local Global Positioning System (GPS)-based survey. The starting components include the latitude, longitude, elevation and observed gravity at each station location. Interpolated surfaces of the complete Bouguer anomaly are used as a means of quality control and comparison. The result is an integrated dataset of varying quality with many stations having GPS accuracy and other reliable stations of unknown origin, yielding a wider coverage and greater spatial resolution than either survey alone.

Alternative dispute resolution programs in health care: a study of organizational utilization.

Science.gov (United States)

Rotarius, T M; Liberman, A; Osterman, K C; Putnam, P

1999-03-01

The hyperturbulence in today's health care environment acts as a primer that escalates the frequency and severity of business conflicts. Several alternative dispute resolution (ADR) programs are described, with ADR suggested as a viable approach in assisting organizations in resolving conflicts. The data indicate that all of the health care organizations surveyed utilize some form of ADR to resolve conflict. The most common conflict resolution objective found is win/win, and respondents felt that ADR effectively met intended objectives. While the data gathered for this study are from a limited geographic region in Central Florida, the results can likely be generalized to many socially and ethnically diverse regions of the country.

Introducing mixotrophy into a biogeochemical model describing an eutrophied coastal ecosystem: The Southern North Sea

Science.gov (United States)

Ghyoot, Caroline; Lancelot, Christiane; Flynn, Kevin J.; Mitra, Aditee; Gypens, Nathalie

2017-09-01

Most biogeochemical/ecological models divide planktonic protists between phototrophs (phytoplankton) and heterotrophs (zooplankton). However, a large number of planktonic protists are able to combine several mechanisms of carbon and nutrient acquisition. Not representing these multiple mechanisms in biogeochemical/ecological models describing eutrophied coastal ecosystems can potentially lead to different conclusions regarding ecosystem functioning, especially regarding the success of harmful algae, which are often reported as mixotrophic. This modelling study investigates the implications for trophic dynamics of including 3 contrasting forms of mixotrophy, namely osmotrophy (using alkaline phosphatase activity, APA), non-constitutive mixotrophy (acquired phototrophy by microzooplankton) and also constitutive mixotrophy. The application is in the Southern North Sea, an ecosystem that faced, between 1985 and 2005, a significant increase in the nutrient supply N:P ratio (from 31 to 81 mol N:P). The comparison with a traditional model shows that, when the winter N:P ratio in the Southern North Sea is above 22 molN molP-1 (as occurred from mid-1990s), APA allows a 3-32% increase of annual gross primary production (GPP). In result of the higher GPP, the annual sedimentation increases as well as the bacterial production. By contrast, APA does not affect the export of matter to higher trophic levels because the increased GPP is mainly due to Phaeocystis colonies, which are not grazed by copepods. Under high irradiance, non-constitutive mixotrophy appreciably increases annual GPP, transfer to higher trophic levels, sedimentation, and nutrient remineralisation. In this ecosystem, non-constitutive mixotrophy is also observed to have an indirect stimulating effect on diatoms. Constitutive mixotrophy in nanoflagellates appears to have little influence on this ecosystem functioning. An important conclusion from this work is that contrasting forms of mixotrophy have different

Super-resolution

DEFF Research Database (Denmark)

Nasrollahi, Kamal; Moeslund, Thomas B.

2014-01-01

Super-resolution, the process of obtaining one or more high-resolution images from one or more low-resolution observations, has been a very attractive research topic over the last two decades. It has found practical applications in many real world problems in different fields, from satellite...

Analysis strategies for high-resolution UHF-fMRI data.

Science.gov (United States)

Polimeni, Jonathan R; Renvall, Ville; Zaretskaya, Natalia; Fischl, Bruce

2018-03-01

Functional MRI (fMRI) benefits from both increased sensitivity and specificity with increasing magnetic field strength, making it a key application for Ultra-High Field (UHF) MRI scanners. Most UHF-fMRI studies utilize the dramatic increases in sensitivity and specificity to acquire high-resolution data reaching sub-millimeter scales, which enable new classes of experiments to probe the functional organization of the human brain. This review article surveys advanced data analysis strategies developed for high-resolution fMRI at UHF. These include strategies designed to mitigate distortion and artifacts associated with higher fields in ways that attempt to preserve spatial resolution of the fMRI data, as well as recently introduced analysis techniques that are enabled by these extremely high-resolution data. Particular focus is placed on anatomically-informed analyses, including cortical surface-based analysis, which are powerful techniques that can guide each step of the analysis from preprocessing to statistical analysis to interpretation and visualization. New intracortical analysis techniques for laminar and columnar fMRI are also reviewed and discussed. Prospects for single-subject individualized analyses are also presented and discussed. Altogether, there are both specific challenges and opportunities presented by UHF-fMRI, and the use of proper analysis strategies can help these valuable data reach their full potential. Copyright © 2017 Elsevier Inc. All rights reserved.

Sea Level History in 3D: Early results of an ultra-high resolution MCS survey across IODP Expedition 313 drillsites

Science.gov (United States)

Mountain, G. S.; Kucuk, H. M.; Nedimovic, M. R.; Austin, J. A., Jr.; Fulthorpe, C.; Newton, A.; Baldwin, K.; Johnson, C.; Stanley, J. N.; Bhatnagar, T.

2015-12-01

Although globally averaged sea level is rising at roughly 3 mm/yr (and is accelerating), rates of local sea-level change measured at coastlines may differ from this number by a factor of two or more; at some locations, sea level may even be falling. This is due to local processes that can match or even reverse the global trend, making it clear that reliable predictions of future impacts of sea-level rise require a firm understanding of processes at the local level. The history of local sea-level change and shoreline response is contained in the geologic record of shallow-water sediments. We report on a continuing study of sea-level history in sediments at the New Jersey continental margin, where compaction and glacial isostatic adjustment are currently adding 2 mm/yr to the globally averaged rise. We collected 570 sq km of ultra-high resolution 3D MCS data aboard the R/V Langseth in June-July 2015; innovative recording and preliminary results are described by Nedimovic et al. in this same session. The goal was to provide regional context to coring and logging at IODP Exp 313 sites 27-29 that were drilled 750 m into the New Jersey shelf in 2009. These sites recovered a nearly continuous record of post-Eocene sediments from non-marine soils, estuaries, shoreface, delta front, pro-delta and open marine settings. Existing seismic data are good but are 2D high-resolution profiles at line spacings too wide to enable mapping of key nearshore features. The Langseth 3D survey used shallow towing of a tuned air gun array to preserve high frequencies, and twenty-four 50-m PCables each 12.5 apart provided 6.25 x 3.125 m common-midpoint bins along seventy-seven 50-km sail lines. With this especially dense spatial resolution of a pre-stack time migrated volume we expect to map rivers, incised valleys, barrier islands, inlets and bays, pro-delta clinoforms, tidal deltas, sequence boundaries, debris flow aprons, and more. Seismic attributes linked to sedimentary facies and

NERC's Biogeochemical Ocean Flux Study (North Atlantic Data Set) was collected aboard the RRS DISCOVERY and CHARLES DARWIN in the North Atlantic Ocean from 19890417 to 19910728 (NODC Accession 0000708)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Biogeochemical Ocean Flux Study (BOFS) was a Community Research Project of the Marine and Atmospheric Sciences Directorate of the Natural Environment Research...

Modeling lakes and reservoirs in the climate system

Science.gov (United States)

MacKay, M.D.; Neale, P.J.; Arp, C.D.; De Senerpont Domis, L. N.; Fang, X.; Gal, G.; Jo, K.D.; Kirillin, G.; Lenters, J.D.; Litchman, E.; MacIntyre, S.; Marsh, P.; Melack, J.; Mooij, W.M.; Peeters, F.; Quesada, A.; Schladow, S.G.; Schmid, M.; Spence, C.; Stokes, S.L.

2009-01-01

Modeling studies examining the effect of lakes on regional and global climate, as well as studies on the influence of climate variability and change on aquatic ecosystems, are surveyed. Fully coupled atmosphere-land surface-lake climate models that could be used for both of these types of study simultaneously do not presently exist, though there are many applications that would benefit from such models. It is argued here that current understanding of physical and biogeochemical processes in freshwater systems is sufficient to begin to construct such models, and a path forward is proposed. The largest impediment to fully representing lakes in the climate system lies in the handling of lakes that are too small to be explicitly resolved by the climate model, and that make up the majority of the lake-covered area at the resolutions currently used by global and regional climate models. Ongoing development within the hydrological sciences community and continual improvements in model resolution should help ameliorate this issue.

Restoration of biogeochemical function in mangrove forests

Science.gov (United States)

McKee, K.L.; Faulkner, P.L.

2000-01-01

Forest structure of mangrove restoration sites (6 and 14 years old) at two locations (Henderson Creek [HC] and Windstar [WS]) in southwest Florida differed from that of mixed-basin forests (>50 years old) with which they were once contiguous. However, the younger site (HC) was typical of natural, developing forests, whereas the older site (WS) was less well developed with low structural complexity. More stressful physicochemical conditions resulting from incomplete tidal flushing (elevated salinity) and variable topography (waterlogging) apparently affected plant survival and growth at the WS restoration site. Lower leaf fall and root production rates at the WS restoration site, compared with that at HC were partly attributable to differences in hydroedaphic conditions and structural development. However, leaf and root inputs at each restoration site were not significantly different from that in reference forests within the same physiographic setting. Macrofaunal consumption of tethered leaves also did not differ with site history, but was dramatically higher at HC compared with WS, reflecting local variation in leaf litter processing rates, primarily by snails (Melampus coffeus). Degradation of leaves and roots in mesh bags was slow overall at restoration sites, however, particularly at WS where aerobic decomposition may have been more limited. These findings indicate that local or regional factors such as salinity regime act together with site history to control primary production and turnover rates of organic matter in restoration sites. Species differences in senescent leaf nitrogen content and degradation rates further suggest that restoration sites dominated by Laguncularia racemosa and Rhizophora mangle should exhibit slower recycling of nutrients compared with natural basin forests where Avicennia germinans is more abundant. Structural development and biogeochemical functioning of restored mangrove forests thus depend on a number of factors, but site

Biogeochemical gradients above a coal tar DNAPL

Energy Technology Data Exchange (ETDEWEB)

Scherr, Kerstin E., E-mail: kerstin.brandstaetter-scherr@boku.ac.at [University of Natural Resources and Life Sciences Vienna (BOKU), Department IFA-Tulln, Institute for Environmental Biotechnology, Konrad Lorenz Strasse 20, 3430 Tulln (Austria); Backes, Diana [University of Natural Resources and Life Sciences Vienna (BOKU), Department IFA-Tulln, Institute for Environmental Biotechnology, Konrad Lorenz Strasse 20, 3430 Tulln (Austria); Scarlett, Alan G. [University of Plymouth, Petroleum and Environmental Geochemistry Group, Biogeochemistry Research Centre, Drake Circus, Plymouth, Devon PL4 8AA (United Kingdom); Lantschbauer, Wolfgang [Government of Upper Austria, Directorate for Environment and Water Management, Division for Environmental Protection, Kärntner Strasse 10-12, 4021 Linz (Austria); Nahold, Manfred [GUT Gruppe Umwelt und Technik GmbH, Ingenieurbüro für Technischen Umweltschutz, Plesching 15, 4040 Linz (Austria)

2016-09-01

absent or shrinking. - Highlights: • Redox conditions change from aerobic to methanogenic above coal tar DNAPL. • Steep vertical hydrocarbon, biogeochemical and microbial gradients observed • DNAPL impact on groundwater quality is vertically and horizontally highly confined. • Iron reducers absent despite bioavailability of Fe and Mn oxides • Oxygen and nitrate concentrations determine community composition over PAH.

Design and performance of subgrade biogeochemical reactors.

Science.gov (United States)

Gamlin, Jeff; Downey, Doug; Shearer, Brad; Favara, Paul

2017-12-15

Subgrade biogeochemical reactors (SBGRs), also commonly referred to as in situ bioreactors, are a unique technology for treatment of contaminant source areas and groundwater plume hot spots. SBGRs have most commonly been configured for enhanced reductive dechlorination (ERD) applications for chlorinated solvent treatment. However, they have also been designed for other contaminant classes using alternative treatment media. The SBGR technology typically consists of removal of contaminated soil via excavation or large-diameter augers, and backfill of the soil void with gravel and treatment amendments tailored to the target contaminant(s). In most cases SBGRs include installation of infiltration piping and a low-flow pumping system (typically solar-powered) to recirculate contaminated groundwater through the SBGR for treatment. SBGRs have been constructed in multiple configurations, including designs capable of meeting limited access restrictions at heavily industrialized sites, and at sites with restrictions on surface disturbance due to sensitive species or habitat issues. Typical performance results for ERD applications include 85 to 90 percent total molar reduction of chlorinated volatile organic compounds (CVOCs) near the SBGR and rapid clean-up of adjacent dissolved contaminant source areas. Based on a review of the literature and CH2M's field-scale results from over a dozen SBGRs with a least one year of performance data, important site-specific design considerations include: 1) hydraulic residence time should be long enough for sufficient treatment but not too long to create depressed pH and stagnant conditions (e.g., typically between 10 and 60 days), 2) reactor material should balance appropriate organic mulch as optimal bacterial growth media along with other organic additives that provide bioavailable organic carbon, 3) a variety of native bacteria are important to the treatment process, and 4) biologically mediated generation of iron sulfides along with

Unravel the submesoscale dynamics of the phytoplanktonic community in the NW Mediterranean Sea by in situ observations: the 2015 OSCAHR cruise

Science.gov (United States)

Marrec, Pierre; Doglioli, Andrea M.; Grégori, Gérald; Della Penna, Alice; Wagener, Thibaut; Rougier, Gille; Bhairy, Nagib; Dugenne, Mathilde; Lahbib, Soumaya; Thyssen, Melilotus

2017-04-01

Submesoscale phenomena have been recently recognized as a key factor in physical-biological-biogeochemical interactions, even if it remains unclear how these processes affect the global state of the ocean. Significant large-scale impacts of submesoscale structures on primary production and influence on the phytoplankton community structure and diversity have also been reported. In the past decade submesoscale dynamics have been predominately studied through the analysis of numerical simulations. Observing the coupled physical and biogeochemical variability at this scale remains challenging due to the ephemeral nature of submesoscale structures. The in-situ study of such structures necessitates multidisciplinary approaches involving in situ observations, remote sensing and modeling. Last progresses in biogeochemical sensor development and advanced methodology including Lagrangian real-time adaptative strategies represent outstanding opportunities. The OSCAHR (Observing Submesoscale Coupling At High Resolution) campaign has been conducted thanks to a multidisciplinary approach in order to improve the understanding of submesoscale processes. An ephemeral submesoscale structure was first identified in the Ligurian Sea in fall 2015 using both satellite and numerical modeling data before the campaign. Afterwards, advanced observing systems for the physical, biological and biogeochemical characterization of the sea surface layer at a high spatial and temporal frequency were deployed during a 10-days cruise. A MVP (Moving Vessel Profiler) was used to obtain high resolution CTD profiles associated to a new pumping system with 1-m vertical resolution. Moreover, along the ship track, in addition to the standard measurements of seawater surface samples (Chl-a, nutrients, O2, SST, SSS …), we deployed an automated flow cytometer for near real-time characterization of phytoplankton functional groups (from micro-phytoplankton down to cyanobacteria). The observed submesoscale

Wide-field surveys from the SNAP mission

International Nuclear Information System (INIS)

2002-01-01

The Supernova/Acceleration Probe (SNAP) is a proposed space-borne observatory that will survey the sky with a wide-field optical/NIR imager. The images produced by SNAP will have an unprecedented combination of depth, solid-angle, angular resolution, and temporal sampling. Two 7.5 square-degree fields will be observed every four days over 16 months to a magnitude depth of AB = 27.7 in each of nine filters. Co-adding images over all epochs will give an AB = 30.3 per filter. A 300 square-degree field will be surveyed with no repeat visits to AB = 28 per filter. The nine filters span 3500-17000 (angstrom). Although the survey strategy is tailored for supernova and weak gravitational lensing observations, the resulting data supports a broad range of auxiliary science programs

Hong Kong and U.S. Teachers' Perceptions of Mathematical Disagreements and Their Resolution Processes

Science.gov (United States)

Barlow, Angela T.; Huang, Rongjin; Law, Huk-Yuen; Chan, Yip Cheung; Zhang, Qiaoping; Baxter, Wesley A.; Gaddy, Angeline K.

2016-01-01

Mathematical disagreements occur when students challenge each other's ideas related to a mathematical concept. In this research, we examined Hong Kong and U.S. elementary teachers' perceptions of mathematical disagreements and their resolutions using a video-stimulated survey. Participants were directed to give particular attention to the…

The POKEMON Speckle Survey of Nearby M-Dwarfs

Science.gov (United States)

van Belle, Gerard; von Braun, Kaspar; Horch, Elliott; Clark, Catherine; DSSI Speckle Team

2018-01-01

The POKEMON (Pervasive Overview of Kompanions of Every M-dwarf in Our Neighborhood) survey of nearby M-dwarfs intends to inspect, at diffraction-limited resolution, every low-mass star out to 15pc, along with selected additional objects to 25pc. The primary emphasis of the survey is detection of low-mass companions to these M-dwarfs for refinement of the low-mass star multiplicity rate. The resultant catalog of M-dwarf companions will also guide immediate refinement of transit planet detection results from surveys such as TESS. POKEMON is using Lowell Observatory's 4.3-m Discovery Channel Telescope (DCT) with the Differential Speckle Survey Instrument (DSSI) speckle camera, along with the NN-Explore Exoplanet Stellar Speckle Imager (NESSI) speckle imager on 3.5-m WIYN; the survey takes advantage of the extremely rapid observing cadence rates possible with WIYN and (especially) DCT. The current status and preliminary results from the first 20+ nights of observing will be presented. Gotta observe them all!

Poisson traces, D-modules, and symplectic resolutions.

Science.gov (United States)

Etingof, Pavel; Schedler, Travis

2018-01-01

We survey the theory of Poisson traces (or zeroth Poisson homology) developed by the authors in a series of recent papers. The goal is to understand this subtle invariant of (singular) Poisson varieties, conditions for it to be finite-dimensional, its relationship to the geometry and topology of symplectic resolutions, and its applications to quantizations. The main technique is the study of a canonical D-module on the variety. In the case the variety has finitely many symplectic leaves (such as for symplectic singularities and Hamiltonian reductions of symplectic vector spaces by reductive groups), the D-module is holonomic, and hence, the space of Poisson traces is finite-dimensional. As an application, there are finitely many irreducible finite-dimensional representations of every quantization of the variety. Conjecturally, the D-module is the pushforward of the canonical D-module under every symplectic resolution of singularities, which implies that the space of Poisson traces is dual to the top cohomology of the resolution. We explain many examples where the conjecture is proved, such as symmetric powers of du Val singularities and symplectic surfaces and Slodowy slices in the nilpotent cone of a semisimple Lie algebra. We compute the D-module in the case of surfaces with isolated singularities and show it is not always semisimple. We also explain generalizations to arbitrary Lie algebras of vector fields, connections to the Bernstein-Sato polynomial, relations to two-variable special polynomials such as Kostka polynomials and Tutte polynomials, and a conjectural relationship with deformations of symplectic resolutions. In the appendix we give a brief recollection of the theory of D-modules on singular varieties that we require.

Poisson traces, D-modules, and symplectic resolutions

Science.gov (United States)

Etingof, Pavel; Schedler, Travis

2018-03-01

We survey the theory of Poisson traces (or zeroth Poisson homology) developed by the authors in a series of recent papers. The goal is to understand this subtle invariant of (singular) Poisson varieties, conditions for it to be finite-dimensional, its relationship to the geometry and topology of symplectic resolutions, and its applications to quantizations. The main technique is the study of a canonical D-module on the variety. In the case the variety has finitely many symplectic leaves (such as for symplectic singularities and Hamiltonian reductions of symplectic vector spaces by reductive groups), the D-module is holonomic, and hence, the space of Poisson traces is finite-dimensional. As an application, there are finitely many irreducible finite-dimensional representations of every quantization of the variety. Conjecturally, the D-module is the pushforward of the canonical D-module under every symplectic resolution of singularities, which implies that the space of Poisson traces is dual to the top cohomology of the resolution. We explain many examples where the conjecture is proved, such as symmetric powers of du Val singularities and symplectic surfaces and Slodowy slices in the nilpotent cone of a semisimple Lie algebra. We compute the D-module in the case of surfaces with isolated singularities and show it is not always semisimple. We also explain generalizations to arbitrary Lie algebras of vector fields, connections to the Bernstein-Sato polynomial, relations to two-variable special polynomials such as Kostka polynomials and Tutte polynomials, and a conjectural relationship with deformations of symplectic resolutions. In the appendix we give a brief recollection of the theory of D-modules on singular varieties that we require.

Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume.

Directory of Open Access Journals (Sweden)

Brian L Zielinski

Full Text Available The Amazon River has the largest discharge of all rivers on Earth, and its complex plume system fuels a wide array of biogeochemical processes, across a large area of the western tropical North Atlantic. The plume thus stimulates microbial processes affecting carbon sequestration and nutrient cycles at a global scale. Chromosomal gene expression patterns of the 2.0 to 156 μm size-fraction eukaryotic microbial community were investigated in the Amazon River Plume, generating a robust dataset (more than 100 million mRNA sequences that depicts the metabolic capabilities and interactions among the eukaryotic microbes. Combining classical oceanographic field measurements with metatranscriptomics yielded characterization of the hydrographic conditions simultaneous with a quantification of transcriptional activity and identity of the community. We highlight the patterns of eukaryotic gene expression for 31 biogeochemically significant gene targets hypothesized to be valuable within forecasting models. An advantage to this targeted approach is that the database of reference sequences used to identify the target genes was selectively constructed and highly curated optimizing taxonomic coverage, throughput, and the accuracy of annotations. A coastal diatom bloom highly expressed nitrate transporters and carbonic anhydrase presumably to support high growth rates and enhance uptake of low levels of dissolved nitrate and CO2. Diatom-diazotroph association (DDA: diatoms with nitrogen fixing symbionts blooms were common when surface salinity was mesohaline and dissolved nitrate concentrations were below detection, and hence did not show evidence of nitrate utilization, suggesting they relied on ammonium transporters to aquire recently fixed nitrogen. These DDA blooms in the outer plume had rapid turnover of the photosystem D1 protein presumably caused by photodegradation under increased light penetration in clearer waters, and increased expression of silicon

Hyporheic flow and transport processes: mechanisms, models, and biogeochemical implications

Science.gov (United States)

Boano, Fulvio; Harvey, Judson W.; Marion, Andrea; Packman, Aaron I.; Revelli, Roberto; Ridolfi, Luca; Anders, Wörman

2014-01-01

Fifty years of hyporheic zone research have shown the important role played by the hyporheic zone as an interface between groundwater and surface waters. However, it is only in the last two decades that what began as an empirical science has become a mechanistic science devoted to modeling studies of the complex fluid dynamical and biogeochemical mechanisms occurring in the hyporheic zone. These efforts have led to the picture of surface-subsurface water interactions as regulators of the form and function of fluvial ecosystems. Rather than being isolated systems, surface water bodies continuously interact with the subsurface. Exploration of hyporheic zone processes has led to a new appreciation of their wide reaching consequences for water quality and stream ecology. Modern research aims toward a unified approach, in which processes occurring in the hyporheic zone are key elements for the appreciation, management, and restoration of the whole river environment. In this unifying context, this review summarizes results from modeling studies and field observations about flow and transport processes in the hyporheic zone and describes the theories proposed in hydrology and fluid dynamics developed to quantitatively model and predict the hyporheic transport of water, heat, and dissolved and suspended compounds from sediment grain scale up to the watershed scale. The implications of these processes for stream biogeochemistry and ecology are also discussed."

Carbon Transfers and Emissions Following Harvest and Pile Burning in Coastal Douglas-fir Forests Determined from Analysis of High-Resolution UAV Imagery and Point Clouds and from Field Surveys.

Science.gov (United States)

Trofymow, J. A.; Gougeon, F.; Kelley, J. W.

2017-12-01

Forest carbon (C) models require knowledge on C transfers due to intense disturbances such as fire, harvest, and slash burning. In such events, live trees die and C transferred to detritus or exported as round wood. With burning, live and detrital C is lost as emissions. Burning can be incomplete, leaving wood, charred and scattered or in unburnt rings and piles. For harvests, all round wood volume is routinely measured, while dispersed and piled residue volumes are typically assessed in field surveys, scaled to a block. Recently, geospatial methods have been used to determine, for an entire block, piled residues using LiDAR or image point clouds (PC) and dispersed residues by analysis of high-resolution imagery. Second-growth Douglas-fir forests on eastern Vancouver Island were examined, 4 blocks at Oyster River (OR) and 2 at Northwest Bay (NB). OR blocks were cut winter 2011, piled spring 2011, field survey, aerial RGB imagery and LiDAR PC acquired fall 2011, piles burned, burn residues surveyed, and post-burn aerial RGB imagery acquired 2012. NB blocks were cut fall 2014, piled spring 2015, field survey, UAV RGB imagery and image PC acquired summer 2015, piles burned and burn residues surveyed spring 2016, and post-burn UAV RGB imagery and PC acquired fall 2016. Volume to biomass conversion used survey species proportions and wood density. At OR, round wood was 261.7 SE 13.1, firewood 1.7 SE 0.3, and dispersed residue by survey, 13.8 SE 3.6 tonnes dry mass (t dm) ha-1. Piled residues were 8.2 SE 0.9 from pile surveys vs. 25.0 SE 5.9 t dm ha-1 from LiDAR PC bulk pile volumes and packing ratios. Post-burn, piles lost 5.8 SE 0.5 from survey of burn residues vs. 18.2 SE 4.7 t dm ha-1 from pile volume changes using 2011 LiDAR PC and 2012 imagery. The percentage of initial merchantable biomass exported as round & fire wood, remaining as dispersed & piled residue, and lost to burning was, respectively, 92.5%, 5.5% and 2% using only field methods vs. 87%, 7% and 6% from

2500 high-quality genomes reveal that the biogeochemical cycles of C, N, S and H are cross-linked by metabolic handoffs in the terrestrial subsurface

Science.gov (United States)

Anantharaman, K.; Brown, C. T.; Hug, L. A.; Sharon, I.; Castelle, C. J.; Shelton, A.; Bonet, B.; Probst, A. J.; Thomas, B. C.; Singh, A.; Wilkins, M.; Williams, K. H.; Tringe, S. G.; Beller, H. R.; Brodie, E.; Hubbard, S. S.; Banfield, J. F.

2015-12-01

Microorganisms drive the transformations of carbon compounds in the terrestrial subsurface, a key reservoir of carbon on earth, and impact other linked biogeochemical cycles. Our current knowledge of the microbial ecology in this environment is primarily based on 16S rRNA gene sequences that paint a biased picture of microbial community composition and provide no reliable information on microbial metabolism. Consequently, little is known about the identity and metabolic roles of the uncultivated microbial majority in the subsurface. In turn, this lack of understanding of the microbial processes that impact the turnover of carbon in the subsurface has restricted the scope and ability of biogeochemical models to capture key aspects of the carbon cycle. In this study, we used a culture-independent, genome-resolved metagenomic approach to decipher the metabolic capabilities of microorganisms in an aquifer adjacent to the Colorado River, near Rifle, CO, USA. We sequenced groundwater and sediment samples collected across fifteen different geochemical regimes. Sequence assembly, binning and manual curation resulted in the recovery of 2,542 high-quality genomes, 27 of which are complete. These genomes represent 1,300 non-redundant organisms comprising both abundant and rare community members. Phylogenetic analyses involving ribosomal proteins and 16S rRNA genes revealed the presence of up to 34 new phyla that were hitherto unknown. Less than 11% of all genomes belonged to the 4 most commonly represented phyla that constitute 93% of all currently available genomes. Genome-specific analyses of metabolic potential revealed the co-occurrence of important functional traits such as carbon fixation, nitrogen fixation and use of electron donors and electron acceptors. Finally, we predict that multiple organisms are often required to complete redox pathways through a complex network of metabolic handoffs that extensively cross-link subsurface biogeochemical cycles.

Taxonomy of Conflict Detection and Resolution Approaches for Unmanned Aerial Vehicle in an Integrated Airspace

NARCIS (Netherlands)

Jenie, Y.I.; van Kampen, E.; Ellerbroek, J.; Hoekstra, J.M.

2016-01-01

This paper proposes a taxonomy of Conflict Detection and Resolution (CD&R) approaches for Unmanned Aerial Vehicles (UAV) operation in an integrated airspace. Possible approaches for UAVs are surveyed and broken down based on their types of surveillance, coordination, maneuver, and autonomy. The

Groundwater Inputs to Rivers: Hydrological, Biogeochemical and Ecological Effects Inferred by Environmental Isotopes

Energy Technology Data Exchange (ETDEWEB)

Stellato, L. [Centre for Isotopic Research on Cultural and Environmental heritage (CIRCE), Seconda Universita degli Studi di Napoli, Caserta (Italy); Newman, B. D. [Isotope Hydrology Section, International Atomic Energy Agency, Vienna (Austria)

2013-05-15

In an effort to improve river management, numerous studies over the past two decades have supported the concept that river water and groundwater need to be considered together, as part of a hydrologic continuum. In particular, studies of the interface between surface water and groundwater (the hyporheic zone) have seen the tight collaboration of catchment hydrologists and stream ecologists in order to elucidate processes affecting stream functioning. Groundwater and surface waters interact at different spatial and temporal scales depending on system hydrology and geomorphology, which in turn influence nutrient cycling and in-stream ecology in relation to climatic, geologic, biotic and anthropogenic factors. In this paper, groundwater inputs to rivers are explored from two different and complementary perspectives: the hydrogeological, describing the generally acknowledged mechanisms of streamflow generation and the main factors controlling stream-aquifer interactions, and the ecologic, describing the processes occurring at the hyporheical and the riparian zones and their possible effects on stream functioning and on nutrient cycling, also taking into consideration the impact of human activities. Groundwater inflows to rivers can be important controls on hot moment/hot spot type biogeochemical behaviors. A description of the common methods used to assess these processes is provided emphasizing tracer methods (including physical, chemical and isotopic). In particular, naturally occurring isotopes are useful tools to identify stream discharge components, biogeochemical processes involved in nutrient cycling (such as N and P dynamics), nutrient sources and transport to rivers, and subsurface storage zones and residence times of hyporheic water. Several studies which have employed isotope techniques to clarify the processes occurring when groundwater enters the river,are reported in this chapter, with a view to highlighting both the advantages and limitations of these

Atmospheric stellar parameters for large surveys using FASMA, a new spectral synthesis package

Science.gov (United States)

Tsantaki, M.; Andreasen, D. T.; Teixeira, G. D. C.; Sousa, S. G.; Santos, N. C.; Delgado-Mena, E.; Bruzual, G.

2018-02-01

In the era of vast spectroscopic surveys focusing on Galactic stellar populations, astronomers want to exploit the large quantity and good quality of data to derive their atmospheric parameters without losing precision from automatic procedures. In this work, we developed a new spectral package, FASMA, to estimate the stellar atmospheric parameters (namely effective temperature, surface gravity and metallicity) in a fast and robust way. This method is suitable for spectra of FGK-type stars in medium and high resolution. The spectroscopic analysis is based on the spectral synthesis technique using the radiative transfer code, MOOG. The line list is comprised of mainly iron lines in the optical spectrum. The atomic data are calibrated after the Sun and Arcturus. We use two comparison samples to test our method, (i) a sample of 451 FGK-type dwarfs from the high-resolution HARPS spectrograph; and (ii) the Gaia-ESO benchmark stars using both high and medium resolution spectra. We explore biases in our method from the analysis of synthetic spectra covering the parameter space of our interest. We show that our spectral package is able to provide reliable results for a wide range of stellar parameters, different rotational velocities, different instrumental resolutions and for different spectral regions of the VLT-GIRAFFE spectrographs, used amongst others for the Gaia-ESO survey. FASMA estimates stellar parameters in less than 15 m for high-resolution and 3 m for medium-resolution spectra. The complete package is publicly available to the community.